Query 048034
Match_columns 558
No_of_seqs 1051 out of 2994
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1155 Anaphase-promoting com 100.0 8.8E-73 1.9E-77 519.7 50.4 509 4-546 22-555 (559)
2 KOG4626 O-linked N-acetylgluco 100.0 4E-41 8.7E-46 320.4 31.1 421 91-542 49-501 (966)
3 KOG4626 O-linked N-acetylgluco 100.0 4.1E-38 8.9E-43 299.9 24.4 349 168-550 74-444 (966)
4 KOG1173 Anaphase-promoting com 100.0 1.3E-35 2.7E-40 281.4 40.2 470 8-540 16-531 (611)
5 KOG1126 DNA-binding cell divis 100.0 3.2E-35 6.8E-40 284.7 28.9 283 241-532 325-626 (638)
6 TIGR00990 3a0801s09 mitochondr 100.0 1.9E-30 4.2E-35 273.9 49.6 394 94-532 131-577 (615)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-30 2.9E-35 290.7 50.8 432 92-534 365-874 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-30 9.9E-35 286.4 54.3 326 157-484 174-561 (899)
9 PRK11447 cellulose synthase su 100.0 2.3E-29 5E-34 282.4 52.7 368 92-481 114-554 (1157)
10 PRK11447 cellulose synthase su 100.0 3.9E-30 8.5E-35 288.6 45.4 355 155-525 282-739 (1157)
11 PRK15174 Vi polysaccharide exp 100.0 5.2E-30 1.1E-34 269.6 40.6 325 157-531 57-386 (656)
12 TIGR00990 3a0801s09 mitochondr 100.0 5.6E-30 1.2E-34 270.4 39.1 347 176-551 127-565 (615)
13 PRK15174 Vi polysaccharide exp 100.0 5.7E-28 1.2E-32 254.2 37.2 327 175-550 41-374 (656)
14 KOG1174 Anaphase-promoting com 100.0 9.4E-26 2E-30 206.3 41.7 354 174-536 128-510 (564)
15 KOG2002 TPR-containing nuclear 100.0 1.5E-26 3.3E-31 232.5 35.3 360 153-534 353-753 (1018)
16 PF04049 APC8: Anaphase promot 100.0 2.9E-29 6.2E-34 205.9 11.9 137 3-157 5-141 (142)
17 KOG0547 Translocase of outer m 100.0 1.3E-25 2.8E-30 209.7 29.4 239 270-532 327-572 (606)
18 PRK11788 tetratricopeptide rep 100.0 7.5E-25 1.6E-29 219.9 36.4 302 174-525 33-346 (389)
19 PRK10049 pgaA outer membrane p 99.9 6.4E-24 1.4E-28 228.3 44.6 228 286-533 213-463 (765)
20 KOG2002 TPR-containing nuclear 99.9 2.4E-24 5.2E-29 216.9 38.0 391 92-526 43-481 (1018)
21 PRK09782 bacteriophage N4 rece 99.9 7.2E-24 1.6E-28 227.9 43.5 388 93-531 316-745 (987)
22 KOG1126 DNA-binding cell divis 99.9 2.6E-25 5.6E-30 216.2 27.6 278 165-484 342-619 (638)
23 PRK09782 bacteriophage N4 rece 99.9 8.2E-24 1.8E-28 227.5 39.7 369 91-513 377-760 (987)
24 PRK10049 pgaA outer membrane p 99.9 1.6E-23 3.5E-28 225.2 42.1 320 165-534 38-430 (765)
25 KOG1155 Anaphase-promoting com 99.9 4.6E-23 9.9E-28 191.7 37.2 352 91-484 165-535 (559)
26 PRK11788 tetratricopeptide rep 99.9 2.3E-23 5E-28 209.1 32.9 281 237-538 37-322 (389)
27 KOG1173 Anaphase-promoting com 99.9 7.5E-22 1.6E-26 188.2 34.3 366 92-507 143-533 (611)
28 KOG0624 dsRNA-activated protei 99.9 5.1E-22 1.1E-26 177.9 29.8 313 172-533 34-377 (504)
29 PRK14574 hmsH outer membrane p 99.9 8.3E-21 1.8E-25 200.4 40.5 353 171-533 29-520 (822)
30 KOG0547 Translocase of outer m 99.9 1.4E-21 3.1E-26 182.8 30.4 235 236-486 327-567 (606)
31 KOG2003 TPR repeat-containing 99.9 3.1E-22 6.7E-27 185.4 25.7 260 274-542 424-705 (840)
32 KOG0548 Molecular co-chaperone 99.9 1E-20 2.2E-25 179.9 31.2 327 180-541 6-470 (539)
33 KOG2076 RNA polymerase III tra 99.9 2.7E-20 5.9E-25 186.8 35.7 343 155-524 152-553 (895)
34 KOG1174 Anaphase-promoting com 99.9 5.7E-20 1.2E-24 168.7 33.6 451 11-511 3-519 (564)
35 PF13429 TPR_15: Tetratricopep 99.9 3.2E-23 6.9E-28 197.4 12.4 263 180-525 12-276 (280)
36 KOG0495 HAT repeat protein [RN 99.9 1.4E-19 2.9E-24 175.1 35.8 321 176-539 516-859 (913)
37 KOG2076 RNA polymerase III tra 99.9 4E-20 8.7E-25 185.6 33.2 317 177-527 140-513 (895)
38 PRK12370 invasion protein regu 99.9 3.5E-20 7.6E-25 192.3 32.9 266 175-526 257-535 (553)
39 TIGR00540 hemY_coli hemY prote 99.9 2E-19 4.4E-24 180.0 35.2 302 178-525 86-398 (409)
40 KOG1125 TPR repeat-containing 99.9 2.9E-21 6.3E-26 185.2 20.7 255 179-475 288-561 (579)
41 KOG0624 dsRNA-activated protei 99.9 5.1E-19 1.1E-23 158.7 31.5 314 153-503 49-381 (504)
42 KOG1129 TPR repeat-containing 99.9 1.2E-19 2.6E-24 161.8 26.9 261 245-530 189-462 (478)
43 KOG4162 Predicted calmodulin-b 99.9 8.5E-19 1.8E-23 173.3 35.0 350 173-531 320-788 (799)
44 KOG1129 TPR repeat-containing 99.9 4.3E-21 9.4E-26 170.9 17.0 251 175-465 222-472 (478)
45 KOG0495 HAT repeat protein [RN 99.9 4E-18 8.8E-23 165.0 38.6 374 96-545 522-899 (913)
46 PF13429 TPR_15: Tetratricopep 99.9 8.8E-22 1.9E-26 187.5 12.3 268 92-485 10-277 (280)
47 PRK11189 lipoprotein NlpI; Pro 99.9 2.1E-19 4.6E-24 171.2 27.5 241 248-544 39-283 (296)
48 TIGR00540 hemY_coli hemY prote 99.9 2E-18 4.3E-23 172.9 34.9 291 155-486 97-400 (409)
49 KOG0548 Molecular co-chaperone 99.9 2.9E-18 6.3E-23 163.4 33.3 400 96-525 8-488 (539)
50 KOG0550 Molecular chaperone (D 99.9 7.6E-20 1.6E-24 168.2 20.2 278 178-485 51-350 (486)
51 KOG1125 TPR repeat-containing 99.8 8.6E-20 1.9E-24 175.2 20.9 265 239-518 289-563 (579)
52 PRK12370 invasion protein regu 99.8 5E-19 1.1E-23 183.7 28.5 215 285-525 277-501 (553)
53 PRK14574 hmsH outer membrane p 99.8 2.5E-17 5.4E-22 174.2 39.5 379 91-500 35-521 (822)
54 PRK10747 putative protoheme IX 99.8 2E-17 4.4E-22 164.6 36.7 301 178-527 86-391 (398)
55 PLN03218 maturation of RBCL 1; 99.8 7E-16 1.5E-20 167.8 49.6 318 174-539 470-797 (1060)
56 PRK10747 putative protoheme IX 99.8 2.9E-17 6.4E-22 163.5 34.9 282 158-485 100-390 (398)
57 PRK11189 lipoprotein NlpI; Pro 99.8 4.1E-18 8.8E-23 162.4 26.6 231 158-468 42-283 (296)
58 COG3063 PilF Tfp pilus assembl 99.8 6.9E-18 1.5E-22 144.2 24.0 206 270-533 36-243 (250)
59 KOG1156 N-terminal acetyltrans 99.8 1.4E-16 2.9E-21 154.9 34.4 411 89-524 6-509 (700)
60 KOG2003 TPR repeat-containing 99.8 3.6E-17 7.8E-22 152.0 29.0 297 179-524 422-720 (840)
61 TIGR02521 type_IV_pilW type IV 99.8 1.5E-17 3.3E-22 154.1 26.5 199 271-484 33-231 (234)
62 COG2956 Predicted N-acetylgluc 99.8 1.8E-16 3.9E-21 141.7 31.4 262 179-484 38-310 (389)
63 TIGR02521 type_IV_pilW type IV 99.8 1.8E-17 3.9E-22 153.7 26.7 205 174-452 29-233 (234)
64 KOG1840 Kinesin light chain [C 99.8 4.8E-18 1E-22 167.8 23.9 260 231-525 195-478 (508)
65 PLN03081 pentatricopeptide (PP 99.8 1.3E-16 2.9E-21 171.3 37.2 296 175-526 258-557 (697)
66 KOG4162 Predicted calmodulin-b 99.8 1.8E-16 3.8E-21 157.1 34.2 351 92-485 324-783 (799)
67 PLN03218 maturation of RBCL 1; 99.8 5.6E-15 1.2E-19 160.9 47.4 322 174-543 435-766 (1060)
68 PLN03081 pentatricopeptide (PP 99.8 2.8E-15 6E-20 161.2 44.5 313 174-543 156-506 (697)
69 COG3063 PilF Tfp pilus assembl 99.8 5.8E-17 1.3E-21 138.6 24.7 208 176-457 35-242 (250)
70 PLN03077 Protein ECB2; Provisi 99.8 1.7E-15 3.8E-20 166.8 41.3 399 95-543 227-669 (857)
71 PLN02789 farnesyltranstransfer 99.8 8.3E-17 1.8E-21 152.7 25.1 232 245-534 47-310 (320)
72 KOG1127 TPR repeat-containing 99.8 2.8E-17 6E-22 166.2 22.4 355 159-526 475-913 (1238)
73 COG2956 Predicted N-acetylgluc 99.8 5.6E-16 1.2E-20 138.6 27.5 273 238-531 38-316 (389)
74 KOG0550 Molecular chaperone (D 99.8 3.6E-17 7.8E-22 150.7 19.9 264 241-528 55-352 (486)
75 cd05804 StaR_like StaR_like; a 99.8 1.4E-15 3E-20 150.7 32.9 319 172-526 2-336 (355)
76 KOG1156 N-terminal acetyltrans 99.8 2.5E-15 5.3E-20 146.3 30.9 327 157-532 22-440 (700)
77 KOG1840 Kinesin light chain [C 99.7 5.7E-16 1.2E-20 153.3 25.9 265 171-488 194-482 (508)
78 KOG1127 TPR repeat-containing 99.7 7.6E-16 1.7E-20 156.0 26.0 347 177-525 563-995 (1238)
79 PLN03077 Protein ECB2; Provisi 99.7 1.3E-14 2.7E-19 160.0 38.1 292 175-525 423-719 (857)
80 PLN02789 farnesyltranstransfer 99.7 3.6E-15 7.8E-20 141.6 27.9 208 185-432 46-267 (320)
81 KOG2376 Signal recognition par 99.7 4.6E-13 9.9E-18 129.4 35.7 358 154-543 24-504 (652)
82 TIGR03302 OM_YfiO outer membra 99.7 5.5E-15 1.2E-19 137.1 21.1 178 332-527 28-233 (235)
83 KOG3785 Uncharacterized conser 99.7 1.9E-13 4E-18 123.9 29.7 281 239-534 155-497 (557)
84 TIGR03302 OM_YfiO outer membra 99.7 1.4E-14 3.1E-19 134.3 22.3 192 172-417 29-234 (235)
85 KOG1915 Cell cycle control pro 99.7 7.7E-12 1.7E-16 117.8 39.6 402 95-527 78-537 (677)
86 KOG1915 Cell cycle control pro 99.7 1.1E-12 2.4E-17 123.3 33.6 344 173-526 70-500 (677)
87 PF12569 NARP1: NMDA receptor- 99.6 4.6E-13 1E-17 134.5 31.7 317 176-526 4-334 (517)
88 cd05804 StaR_like StaR_like; a 99.6 3.7E-13 8E-18 133.4 30.8 275 232-526 3-293 (355)
89 PRK10370 formate-dependent nit 99.6 3.9E-14 8.5E-19 125.8 19.7 135 399-543 52-189 (198)
90 PRK15359 type III secretion sy 99.6 1.3E-14 2.9E-19 122.0 15.7 127 357-510 13-139 (144)
91 KOG1130 Predicted G-alpha GTPa 99.6 8.1E-15 1.8E-19 135.1 15.2 286 179-525 20-343 (639)
92 PRK15359 type III secretion sy 99.6 1.2E-14 2.7E-19 122.3 14.7 126 324-469 14-139 (144)
93 KOG3785 Uncharacterized conser 99.6 2.9E-12 6.3E-17 116.3 29.1 310 176-522 57-453 (557)
94 KOG2376 Signal recognition par 99.6 7.3E-11 1.6E-15 114.4 38.6 378 92-523 48-517 (652)
95 COG5010 TadD Flp pilus assembl 99.6 5E-13 1.1E-17 117.4 20.1 179 288-484 52-230 (257)
96 PRK15179 Vi polysaccharide bio 99.6 3.6E-13 7.9E-18 140.3 22.6 137 386-531 86-222 (694)
97 KOG3060 Uncharacterized conser 99.6 1.5E-11 3.3E-16 106.9 28.3 177 241-432 58-237 (289)
98 KOG1128 Uncharacterized conser 99.6 9.4E-13 2E-17 130.3 22.6 224 230-485 393-616 (777)
99 COG5010 TadD Flp pilus assembl 99.5 2.1E-12 4.5E-17 113.5 21.9 179 322-525 52-230 (257)
100 COG3071 HemY Uncharacterized e 99.5 7.2E-11 1.6E-15 109.6 32.7 271 242-525 91-389 (400)
101 PF12569 NARP1: NMDA receptor- 99.5 4.6E-11 1E-15 120.2 34.2 289 160-489 22-338 (517)
102 PRK10370 formate-dependent nit 99.5 2.9E-12 6.3E-17 113.8 20.6 113 325-454 61-176 (198)
103 PRK14720 transcript cleavage f 99.5 6.5E-12 1.4E-16 131.8 25.7 225 204-509 25-269 (906)
104 COG3071 HemY Uncharacterized e 99.5 2.6E-10 5.6E-15 105.9 33.0 285 156-486 98-391 (400)
105 KOG1128 Uncharacterized conser 99.5 1.1E-12 2.3E-17 130.0 18.5 221 267-526 396-616 (777)
106 PRK14720 transcript cleavage f 99.5 1E-11 2.2E-16 130.3 24.9 261 171-454 26-309 (906)
107 KOG2047 mRNA splicing factor [ 99.5 1.4E-09 3.1E-14 106.4 37.3 385 95-529 253-690 (835)
108 PRK15179 Vi polysaccharide bio 99.5 1.7E-11 3.6E-16 128.0 25.0 141 328-485 77-217 (694)
109 KOG1130 Predicted G-alpha GTPa 99.5 5.7E-13 1.2E-17 123.1 11.6 245 242-526 24-304 (639)
110 KOG3060 Uncharacterized conser 99.4 2.8E-10 6.1E-15 99.2 27.2 198 250-464 27-233 (289)
111 PRK04841 transcriptional regul 99.4 2.1E-10 4.7E-15 128.1 34.3 323 174-529 407-763 (903)
112 TIGR02552 LcrH_SycD type III s 99.4 3.9E-12 8.5E-17 106.7 15.4 117 407-532 4-120 (135)
113 KOG2047 mRNA splicing factor [ 99.4 5.3E-09 1.1E-13 102.6 37.5 363 121-528 155-581 (835)
114 PRK15363 pathogenicity island 99.4 1.1E-11 2.4E-16 101.9 15.1 100 385-486 34-133 (157)
115 TIGR02552 LcrH_SycD type III s 99.4 1.2E-11 2.5E-16 103.9 15.5 110 358-484 4-113 (135)
116 PF04733 Coatomer_E: Coatomer 99.4 8.6E-12 1.9E-16 117.2 15.2 258 241-531 7-270 (290)
117 PF04733 Coatomer_E: Coatomer 99.4 1.3E-11 2.8E-16 116.0 15.9 231 91-372 36-271 (290)
118 PRK15363 pathogenicity island 99.4 2.3E-11 4.9E-16 100.1 14.6 108 330-454 27-135 (157)
119 KOG0553 TPR repeat-containing 99.4 1.1E-11 2.3E-16 111.2 13.5 129 337-482 81-212 (304)
120 KOG4340 Uncharacterized conser 99.4 2.1E-10 4.5E-15 102.1 20.9 186 187-414 21-206 (459)
121 KOG0553 TPR repeat-containing 99.3 1.9E-11 4.1E-16 109.6 13.9 119 387-514 82-200 (304)
122 KOG4340 Uncharacterized conser 99.3 4.3E-10 9.3E-15 100.1 19.3 268 245-537 20-316 (459)
123 COG4783 Putative Zn-dependent 99.3 2.8E-09 6E-14 102.0 24.8 94 242-369 313-406 (484)
124 COG4783 Putative Zn-dependent 99.3 6.2E-10 1.4E-14 106.3 19.2 146 386-541 306-451 (484)
125 PLN03088 SGT1, suppressor of 99.2 2.9E-10 6.2E-15 111.1 15.8 113 389-510 5-117 (356)
126 PRK10866 outer membrane biogen 99.2 4.2E-09 9.1E-14 96.7 22.4 188 174-412 30-238 (243)
127 PF13525 YfiO: Outer membrane 99.2 3.2E-09 6.8E-14 95.3 21.1 182 174-406 3-198 (203)
128 KOG1941 Acetylcholine receptor 99.2 1E-08 2.2E-13 93.9 24.0 320 176-526 6-360 (518)
129 PLN03088 SGT1, suppressor of 99.2 4E-10 8.6E-15 110.1 15.4 113 340-469 5-117 (356)
130 PRK04841 transcriptional regul 99.2 6E-08 1.3E-12 108.6 34.5 27 500-526 694-720 (903)
131 PRK10866 outer membrane biogen 99.2 6.5E-09 1.4E-13 95.4 21.9 171 335-523 30-238 (243)
132 PRK02603 photosystem I assembl 99.2 1.1E-09 2.3E-14 95.8 15.7 130 384-542 33-165 (172)
133 CHL00033 ycf3 photosystem I as 99.2 1.3E-09 2.8E-14 94.9 16.2 124 351-489 13-146 (168)
134 COG4235 Cytochrome c biogenesi 99.2 2.2E-09 4.8E-14 97.3 17.0 132 402-542 138-272 (287)
135 PF13525 YfiO: Outer membrane 99.1 3E-09 6.4E-14 95.4 17.3 164 268-476 4-198 (203)
136 CHL00033 ycf3 photosystem I as 99.1 3.5E-09 7.6E-14 92.2 15.1 134 401-543 14-166 (168)
137 PRK02603 photosystem I assembl 99.1 2.7E-09 5.8E-14 93.3 14.2 108 334-455 32-153 (172)
138 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.5E-09 5.4E-14 87.4 12.9 109 337-459 2-113 (119)
139 PF13414 TPR_11: TPR repeat; P 99.1 5.1E-10 1.1E-14 81.3 7.5 67 385-453 2-69 (69)
140 KOG1941 Acetylcholine receptor 99.1 1.3E-08 2.9E-13 93.2 17.9 275 241-527 12-321 (518)
141 COG4785 NlpI Lipoprotein NlpI, 99.1 2.1E-08 4.6E-13 85.4 17.7 204 174-416 63-267 (297)
142 COG4235 Cytochrome c biogenesi 99.1 9.9E-09 2.1E-13 93.1 16.9 126 155-305 135-263 (287)
143 TIGR02795 tol_pal_ybgF tol-pal 99.0 5E-09 1.1E-13 85.6 13.5 97 387-485 3-105 (119)
144 PF14938 SNAP: Soluble NSF att 99.0 4.7E-09 1E-13 99.5 14.9 180 338-529 36-228 (282)
145 PF14938 SNAP: Soluble NSF att 99.0 7.1E-08 1.5E-12 91.5 22.9 203 242-484 42-265 (282)
146 KOG1070 rRNA processing protei 99.0 1.4E-07 3E-12 100.4 25.9 221 252-527 1441-1664(1710)
147 cd00189 TPR Tetratricopeptide 99.0 4.2E-09 9.1E-14 81.9 11.6 95 388-484 2-96 (100)
148 KOG2471 TPR repeat-containing 99.0 4.4E-07 9.6E-12 86.6 26.3 144 239-382 210-380 (696)
149 PF09976 TPR_21: Tetratricopep 99.0 2.9E-08 6.3E-13 84.0 17.1 119 396-524 21-145 (145)
150 PF09976 TPR_21: Tetratricopep 99.0 3.1E-08 6.7E-13 83.8 16.7 97 338-449 49-145 (145)
151 cd00189 TPR Tetratricopeptide 99.0 7.2E-09 1.6E-13 80.5 12.0 98 422-528 2-99 (100)
152 KOG3081 Vesicle coat complex C 99.0 4.1E-07 8.8E-12 80.4 23.1 259 239-530 12-275 (299)
153 PF12895 Apc3: Anaphase-promot 99.0 1.9E-09 4.1E-14 81.6 7.3 81 399-482 2-84 (84)
154 PRK10153 DNA-binding transcrip 99.0 4.5E-08 9.8E-13 99.6 19.2 138 175-372 338-488 (517)
155 COG0457 NrfG FOG: TPR repeat [ 99.0 3E-06 6.6E-11 78.2 30.0 222 284-529 38-268 (291)
156 PF13414 TPR_11: TPR repeat; P 98.9 4.7E-09 1E-13 76.2 8.4 64 419-484 2-66 (69)
157 COG0457 NrfG FOG: TPR repeat [ 98.9 8.5E-06 1.8E-10 75.2 32.9 222 248-484 36-264 (291)
158 PRK10153 DNA-binding transcrip 98.9 5.5E-08 1.2E-12 99.0 18.9 134 389-532 342-488 (517)
159 PF12895 Apc3: Anaphase-promot 98.9 3.1E-09 6.7E-14 80.4 7.3 81 435-523 2-84 (84)
160 KOG0543 FKBP-type peptidyl-pro 98.9 1.8E-08 4E-13 94.6 13.6 130 389-527 211-356 (397)
161 KOG3617 WD40 and TPR repeat-co 98.9 2.1E-06 4.7E-11 86.9 28.7 299 186-523 738-1106(1416)
162 PRK15331 chaperone protein Sic 98.9 2.4E-08 5.3E-13 82.7 12.5 98 385-484 36-133 (165)
163 PF13432 TPR_16: Tetratricopep 98.9 5.1E-09 1.1E-13 74.9 7.6 65 390-456 1-65 (65)
164 COG4785 NlpI Lipoprotein NlpI, 98.9 1.9E-07 4.2E-12 79.7 17.8 210 239-471 69-290 (297)
165 PRK11906 transcriptional regul 98.9 1.7E-07 3.7E-12 90.5 19.7 171 341-526 259-436 (458)
166 KOG0543 FKBP-type peptidyl-pro 98.9 2.5E-08 5.4E-13 93.8 13.5 141 339-486 210-356 (397)
167 PRK11906 transcriptional regul 98.9 1.2E-07 2.6E-12 91.5 18.3 174 175-364 252-434 (458)
168 COG4105 ComL DNA uptake lipopr 98.9 7.3E-07 1.6E-11 79.3 21.7 196 174-420 32-238 (254)
169 PRK15331 chaperone protein Sic 98.9 3.3E-08 7.3E-13 81.9 12.2 107 331-455 31-137 (165)
170 PF12688 TPR_5: Tetratrico pep 98.9 1.2E-07 2.6E-12 75.7 14.4 96 387-484 2-103 (120)
171 KOG3081 Vesicle coat complex C 98.8 3.5E-06 7.6E-11 74.7 23.9 161 270-484 109-269 (299)
172 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1E-07 2.2E-12 92.6 15.8 121 342-482 174-294 (395)
173 COG3898 Uncharacterized membra 98.8 4.6E-05 9.9E-10 71.3 31.9 263 173-484 117-391 (531)
174 PRK10803 tol-pal system protei 98.8 1.2E-07 2.5E-12 87.8 15.4 109 270-421 143-252 (263)
175 PF12688 TPR_5: Tetratrico pep 98.8 1E-07 2.3E-12 76.1 13.0 100 337-450 1-103 (120)
176 KOG1070 rRNA processing protei 98.8 2.5E-06 5.3E-11 91.3 26.6 236 192-468 1440-1682(1710)
177 PRK10803 tol-pal system protei 98.8 1.2E-07 2.5E-12 87.7 15.3 105 420-530 142-250 (263)
178 KOG4648 Uncharacterized conser 98.8 4.3E-09 9.3E-14 95.6 5.5 234 179-460 100-339 (536)
179 PF13432 TPR_16: Tetratricopep 98.8 1.6E-08 3.4E-13 72.3 7.2 65 180-269 1-65 (65)
180 KOG2053 Mitochondrial inherita 98.8 4.6E-05 9.9E-10 78.6 32.0 284 155-480 22-332 (932)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 5.2E-07 1.1E-11 87.8 16.9 124 391-526 174-297 (395)
182 COG4105 ComL DNA uptake lipopr 98.7 6.8E-06 1.5E-10 73.3 21.5 198 268-532 33-238 (254)
183 KOG2053 Mitochondrial inherita 98.7 0.00011 2.3E-09 76.0 32.2 227 187-455 20-259 (932)
184 KOG4507 Uncharacterized conser 98.7 1.1E-06 2.5E-11 85.6 16.4 97 435-538 620-717 (886)
185 KOG3617 WD40 and TPR repeat-co 98.7 1.6E-05 3.4E-10 80.9 24.8 288 179-523 803-1171(1416)
186 PF14559 TPR_19: Tetratricopep 98.7 9.8E-08 2.1E-12 68.9 7.1 67 397-465 2-68 (68)
187 PF13424 TPR_12: Tetratricopep 98.6 5.8E-08 1.3E-12 72.3 5.8 73 454-526 3-75 (78)
188 COG4700 Uncharacterized protei 98.6 6.1E-06 1.3E-10 69.0 18.0 156 343-524 62-220 (251)
189 PF13371 TPR_9: Tetratricopept 98.6 2E-07 4.3E-12 68.4 8.6 70 392-463 1-70 (73)
190 COG3898 Uncharacterized membra 98.6 0.00033 7.2E-09 65.7 30.4 276 242-542 91-372 (531)
191 KOG4234 TPR repeat-containing 98.6 7.4E-07 1.6E-11 75.2 12.1 108 389-505 98-210 (271)
192 KOG4234 TPR repeat-containing 98.6 6.1E-07 1.3E-11 75.7 11.5 106 423-537 98-208 (271)
193 COG1729 Uncharacterized protei 98.6 2.6E-06 5.5E-11 76.7 14.7 111 272-425 144-254 (262)
194 COG4700 Uncharacterized protei 98.5 4E-05 8.7E-10 64.2 20.2 132 338-486 90-223 (251)
195 KOG2796 Uncharacterized conser 98.5 1.7E-05 3.6E-10 70.2 18.9 205 238-466 125-333 (366)
196 KOG4648 Uncharacterized conser 98.5 3.6E-08 7.9E-13 89.7 2.6 227 241-484 103-329 (536)
197 PF14559 TPR_19: Tetratricopep 98.5 3.2E-07 7E-12 66.2 7.3 65 435-506 4-68 (68)
198 PF13512 TPR_18: Tetratricopep 98.5 3.8E-06 8.2E-11 68.3 13.8 110 268-420 9-133 (142)
199 KOG2471 TPR repeat-containing 98.5 7.3E-06 1.6E-10 78.5 17.3 227 230-468 95-381 (696)
200 KOG1914 mRNA cleavage and poly 98.5 0.0015 3.2E-08 64.1 34.1 334 167-526 11-464 (656)
201 PF13512 TPR_18: Tetratricopep 98.5 3.7E-06 7.9E-11 68.3 12.7 111 173-305 7-135 (142)
202 KOG4555 TPR repeat-containing 98.5 1.3E-05 2.7E-10 62.9 14.8 95 388-484 45-143 (175)
203 KOG1586 Protein required for f 98.5 5.3E-06 1.2E-10 71.9 14.0 177 343-531 40-229 (288)
204 KOG1914 mRNA cleavage and poly 98.5 0.00097 2.1E-08 65.4 30.2 141 200-367 10-167 (656)
205 PF13371 TPR_9: Tetratricopept 98.5 1.1E-06 2.3E-11 64.5 8.3 71 426-505 1-71 (73)
206 COG1729 Uncharacterized protei 98.4 4E-06 8.6E-11 75.5 12.8 99 424-528 145-246 (262)
207 PF10300 DUF3808: Protein of u 98.4 0.00036 7.8E-09 70.9 27.8 168 343-526 194-376 (468)
208 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.2E-06 2.7E-11 84.6 9.4 68 383-452 72-142 (453)
209 PF13424 TPR_12: Tetratricopep 98.4 4.3E-07 9.2E-12 67.6 4.7 71 337-415 5-75 (78)
210 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2E-06 4.3E-11 83.2 9.8 69 415-485 70-141 (453)
211 KOG1586 Protein required for f 98.4 0.00024 5.3E-09 61.9 21.3 193 187-457 25-230 (288)
212 KOG4555 TPR repeat-containing 98.3 1.1E-05 2.4E-10 63.2 11.5 101 423-528 46-146 (175)
213 KOG2610 Uncharacterized conser 98.3 0.00047 1E-08 63.4 23.3 168 242-420 110-283 (491)
214 KOG4642 Chaperone-dependent E3 98.3 4.8E-06 1E-10 72.5 9.2 97 390-488 14-110 (284)
215 PF10300 DUF3808: Protein of u 98.3 0.0055 1.2E-07 62.4 32.0 193 235-451 164-376 (468)
216 KOG3616 Selective LIM binding 98.2 0.0016 3.4E-08 66.1 26.6 231 272-528 768-1026(1636)
217 PF06552 TOM20_plant: Plant sp 98.2 1E-05 2.2E-10 67.9 9.6 101 353-463 7-121 (186)
218 KOG1585 Protein required for f 98.2 0.00048 1E-08 60.5 20.0 213 175-446 30-251 (308)
219 KOG2610 Uncharacterized conser 98.2 0.00023 4.9E-09 65.4 18.8 95 275-369 109-207 (491)
220 PF06552 TOM20_plant: Plant sp 98.2 1.2E-05 2.6E-10 67.5 9.8 97 437-533 6-116 (186)
221 KOG2796 Uncharacterized conser 98.2 0.003 6.5E-08 56.4 24.9 217 241-486 75-316 (366)
222 KOG1258 mRNA processing protei 98.2 0.006 1.3E-07 61.1 29.7 122 387-517 298-420 (577)
223 KOG1585 Protein required for f 98.2 0.00038 8.2E-09 61.2 18.7 178 337-526 31-219 (308)
224 PF13428 TPR_14: Tetratricopep 98.2 6.3E-06 1.4E-10 53.2 5.6 43 176-218 1-43 (44)
225 PF13281 DUF4071: Domain of un 98.1 0.00097 2.1E-08 64.1 21.9 196 336-544 140-351 (374)
226 PF05843 Suf: Suppressor of fo 98.1 9.5E-05 2.1E-09 69.9 14.7 135 388-531 3-141 (280)
227 PF13428 TPR_14: Tetratricopep 98.1 8E-06 1.7E-10 52.7 5.1 42 387-428 2-43 (44)
228 PF07079 DUF1347: Protein of u 98.1 0.012 2.6E-07 56.8 35.1 389 97-523 13-521 (549)
229 PF04184 ST7: ST7 protein; In 98.1 0.00028 6.1E-09 68.7 17.5 196 300-531 165-380 (539)
230 KOG2300 Uncharacterized conser 98.1 0.014 3E-07 56.8 32.1 135 386-526 367-514 (629)
231 PF04184 ST7: ST7 protein; In 98.0 0.001 2.2E-08 65.0 20.4 229 274-539 173-426 (539)
232 KOG4642 Chaperone-dependent E3 98.0 1.8E-05 4E-10 69.0 6.8 93 424-525 14-106 (284)
233 KOG0985 Vesicle coat protein c 98.0 0.012 2.6E-07 62.2 27.4 252 173-477 1101-1375(1666)
234 KOG1258 mRNA processing protei 97.9 0.029 6.3E-07 56.4 34.8 364 159-541 62-485 (577)
235 PF05843 Suf: Suppressor of fo 97.9 0.00025 5.4E-09 67.1 14.3 145 178-378 3-148 (280)
236 COG2909 MalT ATP-dependent tra 97.9 0.0075 1.6E-07 63.1 25.1 304 176-523 347-685 (894)
237 KOG0545 Aryl-hydrocarbon recep 97.9 0.00029 6.4E-09 61.8 12.2 82 456-544 230-311 (329)
238 PF13281 DUF4071: Domain of un 97.8 0.011 2.3E-07 57.2 23.4 170 270-457 142-340 (374)
239 PF13431 TPR_17: Tetratricopep 97.8 1.7E-05 3.7E-10 47.6 2.9 32 409-442 2-33 (34)
240 KOG3616 Selective LIM binding 97.8 0.035 7.6E-07 56.8 27.5 168 242-445 668-847 (1636)
241 PF13431 TPR_17: Tetratricopep 97.8 1.8E-05 3.9E-10 47.5 3.0 34 444-477 1-34 (34)
242 PF03704 BTAD: Bacterial trans 97.7 0.0012 2.5E-08 55.9 13.9 104 390-495 10-135 (146)
243 KOG4507 Uncharacterized conser 97.7 0.0017 3.7E-08 64.2 16.3 111 165-275 202-323 (886)
244 PF00515 TPR_1: Tetratricopept 97.7 5.2E-05 1.1E-09 45.7 3.8 32 387-418 2-33 (34)
245 PF10345 Cohesin_load: Cohesin 97.7 0.1 2.2E-06 55.5 32.4 128 339-474 303-467 (608)
246 PRK15180 Vi polysaccharide bio 97.7 0.051 1.1E-06 52.9 25.3 123 156-303 303-425 (831)
247 PF02259 FAT: FAT domain; Int 97.7 0.025 5.5E-07 55.8 24.8 136 385-529 145-341 (352)
248 PF07719 TPR_2: Tetratricopept 97.7 9.7E-05 2.1E-09 44.5 4.6 34 176-209 1-34 (34)
249 KOG2300 Uncharacterized conser 97.7 0.066 1.4E-06 52.3 36.3 204 274-522 328-552 (629)
250 PF00515 TPR_1: Tetratricopept 97.7 7.4E-05 1.6E-09 45.0 3.9 34 176-209 1-34 (34)
251 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.067 1.5E-06 51.8 28.3 144 198-367 30-191 (660)
252 PF07719 TPR_2: Tetratricopept 97.6 9.5E-05 2.1E-09 44.5 4.2 34 337-370 1-34 (34)
253 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.07 1.5E-06 51.6 29.8 353 164-530 30-535 (660)
254 KOG0376 Serine-threonine phosp 97.6 8E-05 1.7E-09 72.1 5.6 108 391-507 9-116 (476)
255 COG0790 FOG: TPR repeat, SEL1 97.6 0.05 1.1E-06 52.1 24.8 166 338-534 74-274 (292)
256 KOG0530 Protein farnesyltransf 97.6 0.012 2.5E-07 52.7 18.0 212 245-466 53-269 (318)
257 PF10345 Cohesin_load: Cohesin 97.6 0.15 3.2E-06 54.3 32.6 282 175-521 58-428 (608)
258 KOG1550 Extracellular protein 97.5 0.037 8.1E-07 57.8 23.7 263 173-484 241-537 (552)
259 KOG0890 Protein kinase of the 97.5 0.17 3.7E-06 59.0 29.7 123 402-528 1645-1786(2382)
260 KOG0376 Serine-threonine phosp 97.5 0.00018 3.9E-09 69.7 6.0 109 342-467 9-117 (476)
261 COG3118 Thioredoxin domain-con 97.5 0.0062 1.3E-07 55.7 15.2 127 242-369 141-268 (304)
262 COG3118 Thioredoxin domain-con 97.4 0.013 2.7E-07 53.8 16.7 173 160-361 121-296 (304)
263 PF02259 FAT: FAT domain; Int 97.4 0.088 1.9E-06 51.9 24.8 124 333-469 142-305 (352)
264 KOG0545 Aryl-hydrocarbon recep 97.4 0.0014 3E-08 57.8 10.1 96 387-484 179-292 (329)
265 KOG0551 Hsp90 co-chaperone CNS 97.4 0.006 1.3E-07 56.4 14.4 105 176-301 81-185 (390)
266 PF08631 SPO22: Meiosis protei 97.4 0.052 1.1E-06 51.4 21.6 163 186-366 3-186 (278)
267 KOG0985 Vesicle coat protein c 97.4 0.22 4.8E-06 53.2 27.0 290 183-518 1055-1375(1666)
268 PF08424 NRDE-2: NRDE-2, neces 97.4 0.021 4.5E-07 55.2 18.6 163 358-527 6-184 (321)
269 KOG1550 Extracellular protein 97.4 0.069 1.5E-06 55.9 23.5 172 251-446 228-421 (552)
270 PF04910 Tcf25: Transcriptiona 97.3 0.02 4.3E-07 56.0 18.0 156 330-487 33-224 (360)
271 KOG0530 Protein farnesyltransf 97.3 0.072 1.6E-06 47.9 19.4 250 249-536 40-308 (318)
272 PF12968 DUF3856: Domain of Un 97.3 0.02 4.4E-07 44.5 13.7 104 423-526 10-129 (144)
273 COG2976 Uncharacterized protei 97.2 0.037 7.9E-07 47.5 16.1 113 405-527 71-189 (207)
274 COG2909 MalT ATP-dependent tra 97.2 0.12 2.6E-06 54.6 22.6 209 305-526 417-647 (894)
275 PF13181 TPR_8: Tetratricopept 97.2 0.00058 1.2E-08 41.0 3.7 31 387-417 2-32 (34)
276 KOG2396 HAT (Half-A-TPR) repea 97.2 0.29 6.3E-06 48.3 27.4 93 194-311 89-182 (568)
277 PF03704 BTAD: Bacterial trans 97.2 0.0062 1.3E-07 51.4 11.2 108 341-450 10-124 (146)
278 KOG1308 Hsp70-interacting prot 97.1 0.00045 9.8E-09 63.9 3.8 88 395-484 123-210 (377)
279 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0041 8.8E-08 57.5 9.8 105 337-454 81-185 (390)
280 PF13181 TPR_8: Tetratricopept 97.1 0.00074 1.6E-08 40.5 3.6 32 338-369 2-33 (34)
281 KOG1464 COP9 signalosome, subu 97.1 0.034 7.3E-07 50.0 14.9 223 248-511 40-286 (440)
282 KOG1308 Hsp70-interacting prot 97.0 0.00044 9.5E-09 64.0 2.8 87 435-528 127-213 (377)
283 COG0790 FOG: TPR repeat, SEL1 97.0 0.35 7.5E-06 46.2 24.6 182 246-484 52-265 (292)
284 COG2976 Uncharacterized protei 97.0 0.066 1.4E-06 46.0 15.0 98 238-370 92-192 (207)
285 KOG2041 WD40 repeat protein [G 97.0 0.15 3.3E-06 52.1 19.8 28 337-364 796-823 (1189)
286 KOG0890 Protein kinase of the 96.9 0.56 1.2E-05 55.1 25.5 99 421-530 1630-1735(2382)
287 KOG3783 Uncharacterized conser 96.8 0.21 4.5E-06 49.8 19.6 246 159-453 250-522 (546)
288 PF09986 DUF2225: Uncharacteri 96.8 0.026 5.7E-07 50.6 11.9 93 435-527 90-195 (214)
289 PF13174 TPR_6: Tetratricopept 96.7 0.0028 6E-08 37.6 3.8 32 178-209 2-33 (33)
290 KOG2041 WD40 repeat protein [G 96.7 1 2.2E-05 46.5 27.7 136 182-362 740-877 (1189)
291 PF12968 DUF3856: Domain of Un 96.6 0.12 2.6E-06 40.3 12.6 100 388-489 9-133 (144)
292 PRK11619 lytic murein transgly 96.6 1.3 2.9E-05 47.0 33.7 245 264-525 124-374 (644)
293 PF08424 NRDE-2: NRDE-2, neces 96.6 0.14 3E-06 49.5 16.4 157 256-416 6-184 (321)
294 PF13176 TPR_7: Tetratricopept 96.5 0.0045 9.8E-08 37.6 3.6 25 389-413 2-26 (36)
295 PF13174 TPR_6: Tetratricopept 96.4 0.0082 1.8E-07 35.5 4.5 31 271-301 2-32 (33)
296 PF04910 Tcf25: Transcriptiona 96.4 0.086 1.9E-06 51.6 13.7 174 167-369 31-225 (360)
297 PF08631 SPO22: Meiosis protei 96.4 0.94 2E-05 42.9 25.5 225 246-484 4-274 (278)
298 PF13176 TPR_7: Tetratricopept 96.3 0.0054 1.2E-07 37.3 3.4 28 499-526 1-28 (36)
299 KOG3783 Uncharacterized conser 96.3 1.4 3.1E-05 44.2 22.1 70 458-527 451-521 (546)
300 PRK13184 pknD serine/threonine 96.3 1.1 2.5E-05 49.2 22.7 113 179-314 478-597 (932)
301 PF14853 Fis1_TPR_C: Fis1 C-te 96.1 0.024 5.3E-07 37.7 5.6 39 270-308 2-40 (53)
302 KOG4014 Uncharacterized conser 96.0 0.46 9.9E-06 40.4 14.1 168 334-525 31-232 (248)
303 PRK10941 hypothetical protein; 96.0 0.085 1.8E-06 49.0 10.8 76 387-464 182-257 (269)
304 PF10602 RPN7: 26S proteasome 95.9 0.12 2.6E-06 44.9 11.0 104 420-526 36-142 (177)
305 KOG3824 Huntingtin interacting 95.9 0.033 7.2E-07 51.0 7.6 72 391-464 121-192 (472)
306 PF04781 DUF627: Protein of un 95.8 0.2 4.3E-06 38.9 10.5 95 182-298 2-107 (111)
307 PRK10941 hypothetical protein; 95.8 0.13 2.8E-06 47.9 11.2 76 421-505 182-257 (269)
308 PRK15180 Vi polysaccharide bio 95.8 0.041 8.8E-07 53.6 8.0 130 245-374 299-428 (831)
309 PF09613 HrpB1_HrpK: Bacterial 95.7 0.24 5.2E-06 41.5 11.4 84 388-473 12-95 (160)
310 smart00028 TPR Tetratricopepti 95.7 0.019 4E-07 33.3 3.8 32 177-208 2-33 (34)
311 PF09613 HrpB1_HrpK: Bacterial 95.7 0.23 5.1E-06 41.6 11.2 96 422-527 12-107 (160)
312 PF14561 TPR_20: Tetratricopep 95.6 0.16 3.6E-06 38.3 9.4 75 405-481 7-83 (90)
313 smart00028 TPR Tetratricopepti 95.6 0.022 4.7E-07 33.0 3.9 32 338-369 2-33 (34)
314 COG4649 Uncharacterized protei 95.5 1.3 2.7E-05 37.5 15.0 120 398-525 70-195 (221)
315 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.07 1.5E-06 35.5 6.0 38 389-426 4-41 (53)
316 PF07079 DUF1347: Protein of u 95.4 3.1 6.6E-05 41.0 34.2 100 435-538 311-421 (549)
317 PF14561 TPR_20: Tetratricopep 95.2 0.27 5.9E-06 37.1 9.4 49 254-302 7-55 (90)
318 KOG3824 Huntingtin interacting 95.1 0.082 1.8E-06 48.5 7.3 65 435-506 129-193 (472)
319 PF04781 DUF627: Protein of un 95.0 0.78 1.7E-05 35.7 11.2 105 393-529 3-110 (111)
320 PF10602 RPN7: 26S proteasome 95.0 0.32 6.9E-06 42.3 10.4 98 387-486 37-143 (177)
321 COG4976 Predicted methyltransf 94.8 0.055 1.2E-06 47.6 5.2 73 464-543 3-75 (287)
322 TIGR02561 HrpB1_HrpK type III 94.8 1 2.3E-05 37.1 12.0 103 243-364 18-120 (153)
323 PF09986 DUF2225: Uncharacteri 94.8 0.3 6.5E-06 43.9 9.9 91 349-453 89-196 (214)
324 KOG1464 COP9 signalosome, subu 94.7 3.3 7.2E-05 37.7 18.1 195 283-525 41-259 (440)
325 KOG2396 HAT (Half-A-TPR) repea 94.7 0.4 8.7E-06 47.4 11.0 117 403-531 88-205 (568)
326 KOG0128 RNA-binding protein SA 94.6 7.3 0.00016 41.4 22.8 231 292-533 102-348 (881)
327 KOG1538 Uncharacterized conser 94.6 6.3 0.00014 40.6 19.5 122 343-482 709-830 (1081)
328 PRK11619 lytic murein transgly 94.3 8.7 0.00019 41.0 32.0 170 343-526 247-436 (644)
329 KOG4814 Uncharacterized conser 94.3 0.57 1.2E-05 47.7 11.5 97 389-487 357-459 (872)
330 COG3914 Spy Predicted O-linked 94.3 1.5 3.4E-05 44.4 14.4 134 398-540 43-185 (620)
331 PF13374 TPR_10: Tetratricopep 94.1 0.15 3.3E-06 31.8 5.0 33 457-489 3-35 (42)
332 KOG1538 Uncharacterized conser 94.1 1.9 4E-05 44.2 14.4 183 180-412 636-830 (1081)
333 TIGR02561 HrpB1_HrpK type III 94.0 0.96 2.1E-05 37.3 10.2 80 392-473 16-95 (153)
334 KOG3364 Membrane protein invol 93.8 0.44 9.5E-06 38.4 7.8 72 238-309 35-111 (149)
335 COG4976 Predicted methyltransf 93.7 0.12 2.6E-06 45.5 4.9 61 395-457 4-64 (287)
336 KOG2422 Uncharacterized conser 93.7 2.9 6.3E-05 42.3 14.9 181 282-487 251-450 (665)
337 PRK13184 pknD serine/threonine 93.4 16 0.00034 40.7 28.9 107 95-214 480-590 (932)
338 COG3914 Spy Predicted O-linked 93.3 4.8 0.0001 41.0 15.8 136 288-432 50-188 (620)
339 COG4649 Uncharacterized protei 93.2 4.7 0.0001 34.3 14.9 33 333-365 163-195 (221)
340 KOG1839 Uncharacterized protei 93.1 0.95 2.1E-05 50.3 11.5 141 383-525 970-1127(1236)
341 PF12862 Apc5: Anaphase-promot 93.1 0.65 1.4E-05 35.5 7.7 54 435-488 11-73 (94)
342 PF10255 Paf67: RNA polymerase 93.0 2.9 6.3E-05 41.3 13.6 69 339-414 124-192 (404)
343 PF04190 DUF410: Protein of un 92.9 7.9 0.00017 36.1 16.7 138 335-511 88-242 (260)
344 PF12862 Apc5: Anaphase-promot 92.9 0.46 9.9E-06 36.4 6.7 62 466-527 8-71 (94)
345 COG5191 Uncharacterized conser 92.9 0.26 5.6E-06 45.5 5.9 78 383-462 104-182 (435)
346 PF04053 Coatomer_WDAD: Coatom 92.8 2.4 5.1E-05 42.9 13.3 101 245-363 328-428 (443)
347 KOG3364 Membrane protein invol 92.8 3.7 8.1E-05 33.2 11.5 74 455-533 31-107 (149)
348 PF13374 TPR_10: Tetratricopep 92.8 0.25 5.3E-06 30.8 4.3 29 421-451 3-31 (42)
349 PF11817 Foie-gras_1: Foie gra 92.7 5 0.00011 37.1 14.5 67 457-524 179-245 (247)
350 PF04053 Coatomer_WDAD: Coatom 92.5 12 0.00027 37.9 17.8 104 339-483 297-400 (443)
351 COG5159 RPN6 26S proteasome re 92.2 4.5 9.7E-05 37.3 12.7 99 424-526 129-235 (421)
352 TIGR03504 FimV_Cterm FimV C-te 92.2 0.25 5.5E-06 31.3 3.6 41 500-540 2-43 (44)
353 KOG4814 Uncharacterized conser 92.2 1.2 2.6E-05 45.4 10.0 99 342-451 359-457 (872)
354 KOG1310 WD40 repeat protein [G 92.2 0.54 1.2E-05 46.8 7.5 88 397-484 385-473 (758)
355 PF10579 Rapsyn_N: Rapsyn N-te 92.1 2.1 4.5E-05 31.0 8.4 62 179-262 9-70 (80)
356 COG3629 DnrI DNA-binding trans 91.8 2.6 5.5E-05 39.3 11.1 74 420-495 153-226 (280)
357 KOG0128 RNA-binding protein SA 91.8 21 0.00045 38.2 30.0 362 171-544 108-543 (881)
358 PF07721 TPR_4: Tetratricopept 91.3 0.3 6.4E-06 26.9 2.9 25 176-200 1-25 (26)
359 PF11207 DUF2989: Protein of u 91.3 1.7 3.6E-05 38.1 8.7 60 335-406 139-198 (203)
360 PF10579 Rapsyn_N: Rapsyn N-te 91.2 1.5 3.1E-05 31.8 6.9 62 341-414 10-71 (80)
361 KOG2422 Uncharacterized conser 91.0 12 0.00025 38.3 15.2 172 349-528 250-450 (665)
362 COG5191 Uncharacterized conser 90.7 0.71 1.5E-05 42.8 6.2 89 198-311 95-184 (435)
363 COG3629 DnrI DNA-binding trans 90.7 5.5 0.00012 37.2 12.1 65 385-451 152-216 (280)
364 COG2912 Uncharacterized conser 90.7 1.9 4.1E-05 39.6 9.0 74 388-463 183-256 (269)
365 PF07720 TPR_3: Tetratricopept 90.6 0.79 1.7E-05 27.7 4.4 31 388-418 3-35 (36)
366 PF11207 DUF2989: Protein of u 90.5 3.6 7.9E-05 36.0 10.1 73 401-476 121-198 (203)
367 PF07720 TPR_3: Tetratricopept 90.5 0.86 1.9E-05 27.5 4.5 33 177-209 2-36 (36)
368 PF10373 EST1_DNA_bind: Est1 D 90.3 1 2.2E-05 42.6 7.5 62 405-468 1-62 (278)
369 KOG2581 26S proteasome regulat 90.2 19 0.00042 35.1 17.5 32 387-418 248-279 (493)
370 PF15015 NYD-SP12_N: Spermatog 90.1 2.4 5.3E-05 41.1 9.4 60 388-449 230-289 (569)
371 PF07721 TPR_4: Tetratricopept 89.9 0.46 9.9E-06 26.2 2.8 24 498-521 2-25 (26)
372 KOG4014 Uncharacterized conser 89.6 12 0.00027 32.1 17.4 132 337-489 68-237 (248)
373 PF04190 DUF410: Protein of un 89.3 13 0.00028 34.7 13.6 107 398-521 2-114 (260)
374 PF15015 NYD-SP12_N: Spermatog 89.1 6.5 0.00014 38.3 11.4 61 422-484 230-290 (569)
375 KOG1310 WD40 repeat protein [G 89.0 1.4 3.1E-05 43.9 7.2 91 280-370 385-478 (758)
376 KOG3807 Predicted membrane pro 89.0 21 0.00045 33.8 17.1 192 304-531 185-396 (556)
377 KOG0529 Protein geranylgeranyl 88.8 19 0.0004 35.3 14.3 170 193-375 46-233 (421)
378 KOG2114 Vacuolar assembly/sort 88.8 13 0.00027 39.8 14.0 56 311-366 342-397 (933)
379 PF00244 14-3-3: 14-3-3 protei 88.6 16 0.00034 33.5 13.5 54 472-525 142-197 (236)
380 PF12739 TRAPPC-Trs85: ER-Golg 88.3 26 0.00057 35.3 16.1 159 340-527 211-400 (414)
381 PF10516 SHNi-TPR: SHNi-TPR; 88.3 0.83 1.8E-05 27.9 3.3 30 338-367 2-31 (38)
382 COG3947 Response regulator con 88.1 4.1 8.8E-05 37.7 8.9 70 423-494 282-351 (361)
383 COG2912 Uncharacterized conser 88.0 4.1 8.8E-05 37.5 9.0 73 421-502 182-254 (269)
384 PF04097 Nic96: Nup93/Nic96; 88.0 41 0.00089 35.9 24.4 32 505-537 513-544 (613)
385 KOG1839 Uncharacterized protei 87.8 3.4 7.3E-05 46.2 9.8 139 386-526 932-1086(1236)
386 KOG3807 Predicted membrane pro 87.4 26 0.00057 33.1 18.2 108 270-377 276-402 (556)
387 KOG0529 Protein geranylgeranyl 87.3 24 0.00052 34.6 14.0 135 352-502 90-234 (421)
388 PF00244 14-3-3: 14-3-3 protei 87.2 20 0.00043 32.9 13.2 162 239-414 5-197 (236)
389 KOG2581 26S proteasome regulat 87.1 32 0.00069 33.7 21.4 150 175-371 125-281 (493)
390 PF10373 EST1_DNA_bind: Est1 D 86.8 2.4 5.1E-05 40.1 7.4 62 441-509 1-62 (278)
391 KOG2114 Vacuolar assembly/sort 86.4 26 0.00055 37.7 14.6 29 176-204 368-396 (933)
392 smart00386 HAT HAT (Half-A-TPR 86.2 1.8 3.9E-05 24.8 4.1 28 190-217 1-28 (33)
393 PF10516 SHNi-TPR: SHNi-TPR; 85.8 1.5 3.3E-05 26.8 3.5 29 177-205 2-30 (38)
394 PF10255 Paf67: RNA polymerase 85.7 13 0.00028 36.8 11.7 69 271-365 124-192 (404)
395 cd02682 MIT_AAA_Arch MIT: doma 85.2 6.6 0.00014 28.3 7.0 45 458-502 8-52 (75)
396 COG3947 Response regulator con 83.7 9.8 0.00021 35.3 9.1 59 389-449 282-340 (361)
397 PF09670 Cas_Cas02710: CRISPR- 82.1 19 0.00042 35.7 11.6 60 239-298 135-198 (379)
398 smart00386 HAT HAT (Half-A-TPR 81.7 4 8.7E-05 23.3 4.3 28 401-428 2-29 (33)
399 COG1747 Uncharacterized N-term 81.5 65 0.0014 32.8 21.4 181 236-418 100-291 (711)
400 PF13041 PPR_2: PPR repeat fam 81.5 7.8 0.00017 25.2 6.0 30 455-484 2-31 (50)
401 PF12854 PPR_1: PPR repeat 81.5 4.3 9.3E-05 24.0 4.2 27 455-481 6-32 (34)
402 PF13041 PPR_2: PPR repeat fam 81.2 8 0.00017 25.1 6.0 29 421-451 4-32 (50)
403 TIGR03504 FimV_Cterm FimV C-te 80.7 3.5 7.6E-05 26.2 3.8 25 460-484 3-27 (44)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 80.4 30 0.00064 28.1 11.6 44 253-296 81-126 (126)
405 PF12854 PPR_1: PPR repeat 77.9 6.7 0.00014 23.2 4.3 27 419-447 6-32 (34)
406 PF09205 DUF1955: Domain of un 76.8 19 0.00041 29.3 7.5 61 307-367 90-150 (161)
407 COG5159 RPN6 26S proteasome re 76.7 66 0.0014 30.0 22.2 290 180-529 7-317 (421)
408 KOG1463 26S proteasome regulat 76.6 73 0.0016 30.5 24.2 179 273-466 132-328 (411)
409 KOG0687 26S proteasome regulat 76.3 73 0.0016 30.4 12.8 127 154-300 80-212 (393)
410 KOG4521 Nuclear pore complex, 75.7 86 0.0019 35.3 14.3 189 174-367 918-1133(1480)
411 KOG1463 26S proteasome regulat 75.5 79 0.0017 30.4 19.6 272 242-531 11-321 (411)
412 KOG4279 Serine/threonine prote 73.2 79 0.0017 33.8 12.7 102 268-370 200-320 (1226)
413 KOG0276 Vesicle coat complex C 73.2 25 0.00053 36.3 9.1 102 244-363 646-747 (794)
414 KOG1497 COP9 signalosome, subu 72.7 55 0.0012 31.0 10.5 22 388-409 105-126 (399)
415 PF09670 Cas_Cas02710: CRISPR- 72.7 69 0.0015 31.8 12.4 60 390-451 135-198 (379)
416 KOG0686 COP9 signalosome, subu 72.3 1E+02 0.0023 30.3 13.6 95 271-365 152-257 (466)
417 COG4941 Predicted RNA polymera 72.0 95 0.0021 29.8 15.7 137 399-542 269-409 (415)
418 COG4455 ImpE Protein of avirul 72.0 26 0.00056 31.2 7.9 70 242-311 8-77 (273)
419 PHA02537 M terminase endonucle 70.9 59 0.0013 29.5 10.3 31 499-529 171-210 (230)
420 PF12753 Nro1: Nuclear pore co 70.6 92 0.002 30.7 12.0 81 104-188 74-160 (404)
421 KOG2063 Vacuolar assembly/sort 70.5 1.8E+02 0.0039 32.3 18.4 90 395-484 600-712 (877)
422 KOG4521 Nuclear pore complex, 70.4 1.9E+02 0.0041 32.8 15.3 184 337-527 920-1133(1480)
423 COG4455 ImpE Protein of avirul 69.0 57 0.0012 29.2 9.3 55 317-371 15-69 (273)
424 KOG2062 26S proteasome regulat 68.7 55 0.0012 34.8 10.6 177 331-525 53-238 (929)
425 PF11817 Foie-gras_1: Foie gra 68.6 99 0.0021 28.6 17.4 59 388-448 180-244 (247)
426 PF01535 PPR: PPR repeat; Int 68.5 8.8 0.00019 21.5 3.2 28 339-366 2-29 (31)
427 PF01535 PPR: PPR repeat; Int 68.1 9.1 0.0002 21.4 3.2 13 435-447 13-25 (31)
428 COG1747 Uncharacterized N-term 67.6 1.5E+02 0.0033 30.3 22.5 143 388-543 101-251 (711)
429 KOG0546 HSP90 co-chaperone CPR 67.0 9.7 0.00021 36.4 4.7 111 392-511 228-357 (372)
430 PF09205 DUF1955: Domain of un 66.7 48 0.001 27.0 7.7 50 435-484 99-148 (161)
431 PF10952 DUF2753: Protein of u 65.9 53 0.0011 26.3 7.7 61 424-486 5-80 (140)
432 KOG0276 Vesicle coat complex C 65.7 78 0.0017 32.9 10.7 50 395-451 646-695 (794)
433 cd02682 MIT_AAA_Arch MIT: doma 65.5 49 0.0011 23.9 7.2 29 176-204 6-34 (75)
434 PF07163 Pex26: Pex26 protein; 65.2 1.2E+02 0.0026 28.3 12.4 150 391-544 40-205 (309)
435 PRK12798 chemotaxis protein; R 64.7 1.6E+02 0.0034 29.4 21.1 203 175-412 111-321 (421)
436 PF04097 Nic96: Nup93/Nic96; 64.6 17 0.00036 38.9 6.5 25 92-116 260-284 (613)
437 KOG0546 HSP90 co-chaperone CPR 64.2 9.5 0.00021 36.4 4.1 125 342-469 227-356 (372)
438 KOG2561 Adaptor protein NUB1, 63.2 1.3E+02 0.0029 29.9 11.4 106 178-297 165-295 (568)
439 PF10952 DUF2753: Protein of u 62.9 78 0.0017 25.4 8.3 66 459-524 4-77 (140)
440 smart00299 CLH Clathrin heavy 62.9 84 0.0018 25.7 14.8 120 393-539 14-133 (140)
441 TIGR00756 PPR pentatricopeptid 61.8 17 0.00036 20.8 3.7 28 339-366 2-29 (35)
442 PF14863 Alkyl_sulf_dimr: Alky 61.7 22 0.00047 29.5 5.3 42 242-283 77-118 (141)
443 TIGR00756 PPR pentatricopeptid 61.3 20 0.00043 20.5 4.0 22 425-448 5-26 (35)
444 PHA02537 M terminase endonucle 61.1 54 0.0012 29.7 8.1 35 337-371 169-212 (230)
445 PF12739 TRAPPC-Trs85: ER-Golg 59.2 2E+02 0.0044 29.0 18.8 114 90-205 208-329 (414)
446 cd02680 MIT_calpain7_2 MIT: do 58.6 25 0.00054 25.4 4.5 21 468-488 18-38 (75)
447 PF04840 Vps16_C: Vps16, C-ter 58.6 1.8E+02 0.0039 28.1 20.3 101 396-522 187-287 (319)
448 PF09797 NatB_MDM20: N-acetylt 58.4 52 0.0011 32.5 8.5 133 170-327 171-310 (365)
449 KOG0687 26S proteasome regulat 58.1 1.8E+02 0.0038 27.9 12.0 106 336-452 103-211 (393)
450 KOG0889 Histone acetyltransfer 57.3 5.6E+02 0.012 33.4 19.3 103 424-534 2740-2849(3550)
451 TIGR02710 CRISPR-associated pr 57.2 2.1E+02 0.0045 28.4 12.0 54 241-294 136-196 (380)
452 smart00299 CLH Clathrin heavy 55.8 1.1E+02 0.0024 25.0 14.2 49 244-293 16-64 (140)
453 PF06957 COPI_C: Coatomer (COP 55.6 1.5E+02 0.0033 29.7 10.8 93 95-206 123-234 (422)
454 PF14863 Alkyl_sulf_dimr: Alky 55.3 36 0.00078 28.2 5.6 50 268-317 69-118 (141)
455 COG5187 RPN7 26S proteasome re 55.3 1.9E+02 0.004 27.3 13.7 106 175-300 114-223 (412)
456 COG5187 RPN7 26S proteasome re 55.2 1.5E+02 0.0033 27.8 9.8 101 420-526 115-221 (412)
457 cd02680 MIT_calpain7_2 MIT: do 54.3 21 0.00046 25.8 3.6 18 398-415 18-35 (75)
458 PF06957 COPI_C: Coatomer (COP 52.8 1.6E+02 0.0035 29.6 10.5 38 505-542 308-347 (422)
459 cd02683 MIT_1 MIT: domain cont 51.2 93 0.002 22.6 8.3 35 461-495 11-45 (77)
460 COG4941 Predicted RNA polymera 50.6 2.4E+02 0.0052 27.2 16.9 184 250-460 211-403 (415)
461 COG5536 BET4 Protein prenyltra 50.3 2.2E+02 0.0048 26.7 10.4 132 354-503 91-233 (328)
462 PF13812 PPR_3: Pentatricopept 50.3 44 0.00095 19.0 4.2 23 424-448 5-27 (34)
463 COG5536 BET4 Protein prenyltra 50.0 2.2E+02 0.0048 26.6 13.5 166 193-375 49-231 (328)
464 PF09477 Type_III_YscG: Bacter 49.7 1.2E+02 0.0027 23.6 10.5 79 435-525 19-97 (116)
465 KOG0686 COP9 signalosome, subu 49.6 2.8E+02 0.006 27.6 15.2 100 421-524 151-256 (466)
466 KOG4279 Serine/threonine prote 49.6 1.4E+02 0.003 32.1 9.6 184 336-531 200-400 (1226)
467 smart00671 SEL1 Sel1-like repe 49.1 41 0.00088 19.5 3.9 29 338-366 2-34 (36)
468 PF04212 MIT: MIT (microtubule 49.0 91 0.002 21.9 8.0 32 459-490 8-39 (69)
469 KOG2168 Cullins [Cell cycle co 48.6 4.1E+02 0.0088 29.2 14.7 27 93-119 471-497 (835)
470 KOG2561 Adaptor protein NUB1, 48.4 1E+02 0.0023 30.6 8.1 25 501-525 271-295 (568)
471 KOG1920 IkappaB kinase complex 48.0 4.8E+02 0.01 30.0 20.1 258 249-548 771-1046(1265)
472 smart00101 14_3_3 14-3-3 homol 47.6 2.3E+02 0.005 26.1 17.2 54 472-525 144-199 (244)
473 cd00280 TRFH Telomeric Repeat 46.4 2E+02 0.0043 25.1 8.6 54 252-306 86-147 (200)
474 PRK15490 Vi polysaccharide bio 46.4 1.3E+02 0.0028 31.6 9.1 76 250-327 23-98 (578)
475 TIGR03362 VI_chp_7 type VI sec 46.4 2.7E+02 0.0059 26.6 17.4 121 398-525 111-278 (301)
476 KOG2908 26S proteasome regulat 46.3 2.8E+02 0.0061 26.8 14.1 92 435-526 88-186 (380)
477 PF11846 DUF3366: Domain of un 46.2 74 0.0016 28.0 6.7 50 158-208 127-176 (193)
478 COG4259 Uncharacterized protei 46.2 1.3E+02 0.0029 23.0 7.1 57 157-213 52-109 (121)
479 KOG3677 RNA polymerase I-assoc 45.9 2.5E+02 0.0055 27.9 10.2 133 175-364 152-299 (525)
480 PF04090 RNA_pol_I_TF: RNA pol 45.1 2.2E+02 0.0048 25.2 10.9 34 184-217 49-82 (199)
481 KOG4151 Myosin assembly protei 44.4 86 0.0019 33.6 7.5 108 343-463 59-168 (748)
482 KOG2063 Vacuolar assembly/sort 44.0 5.1E+02 0.011 29.0 17.2 163 272-450 507-712 (877)
483 PF04212 MIT: MIT (microtubule 43.9 44 0.00096 23.5 4.0 29 176-204 5-33 (69)
484 cd02679 MIT_spastin MIT: domai 43.6 96 0.0021 22.7 5.6 40 436-490 3-42 (79)
485 smart00777 Mad3_BUB1_I Mad3/BU 43.4 98 0.0021 25.1 6.2 59 453-522 66-124 (125)
486 PF11846 DUF3366: Domain of un 42.9 81 0.0018 27.7 6.4 47 404-453 129-175 (193)
487 PF13226 DUF4034: Domain of un 42.2 2.8E+02 0.0061 26.1 9.9 23 353-375 115-137 (277)
488 KOG4563 Cell cycle-regulated h 41.3 74 0.0016 30.8 5.9 62 458-519 43-105 (400)
489 PF05053 Menin: Menin; InterP 40.6 2.9E+02 0.0063 28.7 10.2 69 455-525 276-346 (618)
490 PRK15490 Vi polysaccharide bio 39.6 2.6E+02 0.0055 29.5 10.0 79 398-480 20-98 (578)
491 PF08238 Sel1: Sel1 repeat; I 39.5 66 0.0014 19.0 3.9 13 402-414 24-36 (39)
492 PF13226 DUF4034: Domain of un 39.4 3.3E+02 0.0072 25.6 11.9 36 402-439 115-150 (277)
493 smart00777 Mad3_BUB1_I Mad3/BU 39.1 2.1E+02 0.0045 23.2 8.1 74 106-201 49-124 (125)
494 KOG4151 Myosin assembly protei 39.0 96 0.0021 33.3 6.9 90 392-481 59-152 (748)
495 PF10938 YfdX: YfdX protein; 38.6 92 0.002 26.4 5.7 119 179-297 5-145 (155)
496 PF15297 CKAP2_C: Cytoskeleton 38.3 1.3E+02 0.0028 29.1 7.0 65 473-541 120-184 (353)
497 PF12753 Nro1: Nuclear pore co 38.0 45 0.00099 32.7 4.1 19 173-191 94-112 (404)
498 cd02681 MIT_calpain7_1 MIT: do 37.3 62 0.0013 23.5 3.8 31 175-205 5-35 (76)
499 PF05053 Menin: Menin; InterP 35.3 2.4E+02 0.0052 29.3 8.7 24 422-447 320-343 (618)
500 cd02683 MIT_1 MIT: domain cont 34.7 1.5E+02 0.0033 21.5 5.5 16 398-413 18-33 (77)
No 1
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-73 Score=519.65 Aligned_cols=509 Identities=52% Similarity=0.850 Sum_probs=477.1
Q ss_pred hHHHHHHHHHHHH-HHhhhchhHHhHHHHHHHcCCCCCCCCCCCCcccccCCCCccccccccCccccccccCccCCCCCC
Q 048034 4 TESCRNELRTAIS-QLNGRCLYSAAKWAAEQLVGIKQDPAKYTPSNTRFQRGSSSICRRFRTNEISSTLVAGVSYVSTPV 82 (558)
Q Consensus 4 ~~~~~~~l~~~~~-~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (558)
.+.+|.+|-..+. ++.+|||.++.||+|+.+.++|.... ++..++++.
T Consensus 22 l~~~r~ql~~~~~~~~~~rgl~~~~~w~a~~~~~~p~~~~-------------------------------~e~~~~~~~ 70 (559)
T KOG1155|consen 22 LEWIRQQLLGICFAETRERGLAHAPKWSAENLLSLPLRMI-------------------------------GEFQTRPPI 70 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCCccc-------------------------------CcccCCCCC
Confidence 4566777777777 68899999999999999999954311 111223567
Q ss_pred cccccccchhHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHH
Q 048034 83 MEEDEVVDSDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLE 162 (558)
Q Consensus 83 ~~~~~~~~~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~ 162 (558)
|++|+..+.|.|++|++||++++|+||+++|+++++....||++||+|++|+++..++..+..++.......+..+..+.
T Consensus 71 p~ed~~~~~~~y~laks~fd~kEf~Raa~fL~~~~s~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~ 150 (559)
T KOG1155|consen 71 PEEDQVLEKDIYLLAKSYFDCKEFERAAFFLQNCKSKKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELN 150 (559)
T ss_pred CCcchhhhcchhhhHhhhhhhHHHHHHHHHHHhcchHHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHh
Confidence 77777778999999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCC--CC--chHHHH
Q 048034 163 RELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSIN--LN--NHWMKD 238 (558)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~--~~--~~~~~~ 238 (558)
+.++...-.+..|++++|+.|.++...|..+.|+..|..++...|.+|++|..|+.++.+.+.+..+. .+ .+||..
T Consensus 151 ~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~ 230 (559)
T KOG1155|consen 151 KPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKK 230 (559)
T ss_pred hHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHH
Confidence 99999888888999999999999999999999999999999999999999999999999998876654 44 899999
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhh-cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGT-FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
+|++.++....+.++++.-++..... +|.+..+..+.|.+.+...|+++|+..|+.+.+.+|.+.+.++.++++++.++
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 99999999999999999999999986 99999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc---------------
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--------------- 382 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------------- 382 (558)
+..+...+++.+..+++.+|++++.+|++|...+++++|+.+|++|++++|+...+|+++||.|+
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 048034 383 ----SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 458 (558)
Q Consensus 383 ----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 458 (558)
|.|+++|++||++|..++++..|+.+|++|+...|+|+++|..||.||.+ .++.++|++||++++..+..+..+
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k--l~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK--LNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--hccHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHH
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSML 538 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll 538 (558)
+..+|.+|.++++.++|..+|++.++.....+...+....+..+||..+.+.+++++|..+..+++.. .+..++++.++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-~~e~eeak~Ll 547 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 99999999999999999999999999876666677888999999999999999999999999999998 58899999999
Q ss_pred HHHHHhcc
Q 048034 539 RGMRMAQS 546 (558)
Q Consensus 539 ~~~~~~~~ 546 (558)
|+|++.+.
T Consensus 548 Reir~~~~ 555 (559)
T KOG1155|consen 548 REIRKIQA 555 (559)
T ss_pred HHHHHhcC
Confidence 99998876
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4e-41 Score=320.36 Aligned_cols=421 Identities=16% Similarity=0.149 Sum_probs=357.4
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhc----cCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHH
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQ----TGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELS 166 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~----~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (558)
.++..||.-.|..|+|..|.+.-.-. .......+-+-+.+..+.. .+ .-.+...
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r--~d--------------------~s~a~~~ 106 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSR--LD--------------------KSSAGSL 106 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccc--hh--------------------hhhhhhh
Confidence 57999999999999999998864322 1112222111122222211 11 0011111
Q ss_pred HhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhc--------CC-CCchHHH
Q 048034 167 TLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNS--------IN-LNNHWMK 237 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~--------l~-~~~~~~~ 237 (558)
..++..|.-...+-.+|.++...|++++|+..|+.++++.|.+.++|..++.++...+.+.. +. .|+.+-.
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 12334566677788889999999999999999999999999999999988888765544322 22 3445555
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 238 DFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 238 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
.-.+|..+...|+..+|...|.++++..|..+.+|..+|.++...|+...|+..|+++++++|+..+++..+++++-..+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc---------------
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--------------- 382 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------------- 382 (558)
.++.|.....+++...|..+.++.++|.+|+.+|..+-|+..|++++.+.|+++.++.+++..+.
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ----ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 048034 383 ----SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 458 (558)
Q Consensus 383 ----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 458 (558)
|.++.+.++||.+|..+|++++|...|.++++..|..+.++.+||.+|.. +|++++|+.+|+.++.+.|...++
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq--qgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ--QGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh--cccHHHHHHHHHHHHhcCchHHHH
Confidence 88999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHH
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSML 538 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll 538 (558)
+.++|..|..+|+...|+.+|.+++. .+|...+++.+||.+|...|+..+|+..|+.++.++|+.++..-.++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~-------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ-------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh-------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 99999999999999999999999999 78999999999999999999999999999999999988887765555
Q ss_pred HHHH
Q 048034 539 RGMR 542 (558)
Q Consensus 539 ~~~~ 542 (558)
-.+.
T Consensus 498 h~lq 501 (966)
T KOG4626|consen 498 HCLQ 501 (966)
T ss_pred HHHH
Confidence 4443
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-38 Score=299.92 Aligned_cols=349 Identities=19% Similarity=0.191 Sum_probs=227.7
Q ss_pred hhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHH
Q 048034 168 LRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQE 247 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 247 (558)
.-..+|.+...+.+++.++++..+++.....-..+++..|...+++..+ |.++.+
T Consensus 74 v~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~-------------------------aN~~ke 128 (966)
T KOG4626|consen 74 VGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNL-------------------------ANILKE 128 (966)
T ss_pred hhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHH-------------------------HHHHHH
Confidence 3344566666666777777777777777777777777777777777766 666666
Q ss_pred HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
.|++++|+..|+.++++.|+..+++..+|.++...|+.+.|..+|..+++++|+...+...+++++-..|...++..-..
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-------------------ccchHH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-------------------SIDYRA 388 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------------------~~~~~~ 388 (558)
+++...|.-+.+|..+|.++...|+...|+.+|++|++++|++.++++++|.+|. |.++.+
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh
Confidence 6666666666666666666666666666666666666666666666666666554 555666
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 468 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 468 (558)
+.++|.+|..+|..+-|+..|++++++.|+.+.+++++|..+.. .|+..+|..+|.+++.+.|+.++++++||.+|.+
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd--~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD--KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh--ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666 6666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH---HHHHHHHHHhc
Q 048034 469 LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA---KSMLRGMRMAQ 545 (558)
Q Consensus 469 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~ll~~~~~~~ 545 (558)
+|++++|...|.++++ ..|....++.+||.+|.++|++++|+.+|+.++.+.|.-.+.. +..++.+++..
T Consensus 367 ~~~~e~A~~ly~~al~-------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE-------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred hccchHHHHHHHHHHh-------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 6666666666666666 4466666666666666666666666666666666665444433 23345555555
Q ss_pred cCCCC
Q 048034 546 SSFPA 550 (558)
Q Consensus 546 ~a~~~ 550 (558)
+|+.+
T Consensus 440 ~A~q~ 444 (966)
T KOG4626|consen 440 AAIQC 444 (966)
T ss_pred HHHHH
Confidence 54443
No 4
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=281.38 Aligned_cols=470 Identities=21% Similarity=0.246 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHhhhchhHHhHHHHHHHcCCCCCCCCCCCCcccccCCCCccccccccCccccccccCccCCCCCCccccc
Q 048034 8 RNELRTAISQLNGRCLYSAAKWAAEQLVGIKQDPAKYTPSNTRFQRGSSSICRRFRTNEISSTLVAGVSYVSTPVMEEDE 87 (558)
Q Consensus 8 ~~~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (558)
....|+.++++.+.+.|.+|+++||.+.++..+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d----------------------------------------------- 48 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTND----------------------------------------------- 48 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC-----------------------------------------------
Confidence 456788888999999999999999999999632
Q ss_pred ccchhHHHHHHHhhcccchHHHHHHHhhccC--ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHH-
Q 048034 88 VVDSDFYLLAKSYFDCREYRRAAHVLRDQTG--KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERE- 164 (558)
Q Consensus 88 ~~~~~~~~la~~~~~~~~~~rA~~~l~~~~~--~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~- 164 (558)
+.|.|++|++++..++|.||.+.+....- .......+++..+...+ ....+..+.+. .......+..-...
T Consensus 49 --p~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk-~~~~al~vl~~---~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 49 --PADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK-EWDQALLVLGR---GHVETNPFSYYEKDA 122 (611)
T ss_pred --hHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhcc---cchhhcchhhcchhh
Confidence 25999999999999999999999987632 22222233333333233 33444444331 11110001000000
Q ss_pred HHHhhh-------CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhh--cC---HHHhhcCCCC
Q 048034 165 LSTLRK-------NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLC--TT---IDILNSINLN 232 (558)
Q Consensus 165 l~~~~~-------~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~--~~---~~~~~~l~~~ 232 (558)
...+.. .......+++++|.+|....++++|...|.+++..++.+.++...|.... +. .+.+.+++..
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 001100 01223568999999999999999999999999999999999998886532 22 2223332211
Q ss_pred chHHHHHHHHHHHHHHh----chHHHHHHHH-HHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHH
Q 048034 233 NHWMKDFFLASTYQELR----MHNEALTKYE-YLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMD 307 (558)
Q Consensus 233 ~~~~~~~~~a~~~~~~~----~~~~A~~~~~-~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 307 (558)
...-..--.-..+++.. ..++++..-. ..+-.-.++.++....+..++..++|.+..++++.+++.+|.+...+.
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~ 282 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP 282 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence 10000000011111110 0011111000 111122356788899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-----
Q 048034 308 MYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK----- 382 (558)
Q Consensus 308 ~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----- 382 (558)
....+++.+|+..++..+.+++++..|..+..|+.+|.+|...|++.+|..+|-++..++|.++.+|...||.|.
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 283 LHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 888899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred --------------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 383 --------------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 383 --------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
|+.......+|.-|.+.++++.|..+|.+|+.+.|++|.+...+|.+.+. .+.|.+|..+|+.+
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~--~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT--YEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh--HhhhHHHHHHHHHH
Confidence 67777788899999999999999999999999999999999999999999 99999999999999
Q ss_pred HhcC----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 449 ANCN----D---SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCT 521 (558)
Q Consensus 449 l~~~----~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 521 (558)
+..- + .....+.+||.++.+++.+++|+.+|++++. ..|.++.++..+|.+|..+|+++.|+++|.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~-------l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL-------LSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 8432 1 2334789999999999999999999999999 789999999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHHH
Q 048034 522 RLLDYTGPEKETAKSMLRG 540 (558)
Q Consensus 522 ~al~~~~~~~~~~~~ll~~ 540 (558)
+++.++|.+ ..+..+|+.
T Consensus 514 KaL~l~p~n-~~~~~lL~~ 531 (611)
T KOG1173|consen 514 KALALKPDN-IFISELLKL 531 (611)
T ss_pred HHHhcCCcc-HHHHHHHHH
Confidence 999998654 455555553
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.2e-35 Score=284.68 Aligned_cols=283 Identities=28% Similarity=0.424 Sum_probs=272.8
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 320 (558)
.|......-+..+|+..|.+.....++..+++.++|.+|+.+++|++|..+|+.+.+..|..++.+..|+.++|.+.+.-
T Consensus 325 ~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 325 EGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 45555566678999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc------------------
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK------------------ 382 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------ 382 (558)
++..+++..+..+|..|++||.+|++|..+++++.|+++|++|++++|++..+++++||++.
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred -ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 048034 383 -SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 461 (558)
Q Consensus 383 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 461 (558)
|+++++||++|.+|.++++++.|..+|++|+.++|.+..+...+|.++.+ .|+.++|+..|++|+.++|.++...+.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~--~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ--LKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH--hhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHH
Q 048034 462 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 462 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 532 (558)
.|.++..++++++|+..+++..+ ..|+...+++.+|++|.+.|+.+.|+..|.-|++++|....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~-------~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKE-------LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999888 67999999999999999999999999999999999987665
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.9e-30 Score=273.90 Aligned_cols=394 Identities=11% Similarity=0.019 Sum_probs=311.0
Q ss_pred HHHHHHhhcccchHHHHHHHhhccC--ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhC
Q 048034 94 YLLAKSYFDCREYRRAAHVLRDQTG--KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKN 171 (558)
Q Consensus 94 ~~la~~~~~~~~~~rA~~~l~~~~~--~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 171 (558)
..+|..+|..|+|++|+..++++.. +...+....+.... ..++...+...+.+.+..
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~---------------------~l~~~~~Ai~~~~~al~l 189 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHN---------------------ALGDWEKVVEDTTAALEL 189 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH---------------------HhCCHHHHHHHHHHHHHc
Confidence 3679999999999999999998743 22222111111110 012234455556667777
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhh-hcCH--H----HhhcC--CCC----------
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSL-CTTI--D----ILNSI--NLN---------- 232 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~--~----~~~~l--~~~---------- 232 (558)
+|.++.+++.+|.++..+|++++|+..|..+...++.+......+... +... . .+... ..+
T Consensus 190 ~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 190 DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 899999999999999999999999999988877666544322111110 0000 0 00000 000
Q ss_pred -------------------chHHHHHHHHHHH---HHHhchHHHHHHHHHHHhh---cCCChHHHHHHHHHHHHcccHHH
Q 048034 233 -------------------NHWMKDFFLASTY---QELRMHNEALTKYEYLQGT---FGFSNYLQAQIAKAQYSLREFEQ 287 (558)
Q Consensus 233 -------------------~~~~~~~~~a~~~---~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~a~~~~~~~~~~~ 287 (558)
......+.++..+ ...+++++|+..|++++.. .|....++..+|.++...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 0000011122221 2246899999999999975 47778899999999999999999
Q ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC
Q 048034 288 VEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 288 A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 367 (558)
|+..|+++++.+|.....+..++.++...|+++++...+.+++..+|.++.+++.+|.++...|++++|+.+|++++.++
T Consensus 350 A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 350 ALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 368 KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
|++.. ++..+|.++..+|++++|+..|++++...|+++.++..+|.++.. .|++++|+..|++
T Consensus 430 P~~~~---------------~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~~~~A~~~~~~ 492 (615)
T TIGR00990 430 PDFIF---------------SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD--QNKFDEAIEKFDT 492 (615)
T ss_pred ccCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--ccCHHHHHHHHHH
Confidence 98554 688899999999999999999999999999999999999999999 9999999999999
Q ss_pred HHhcCCCcHHH------HHHHHH-HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 048034 448 AANCNDSEAIA------LNQLAK-LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYC 520 (558)
Q Consensus 448 al~~~~~~~~~------~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 520 (558)
++.+.|..... +...+. ++...|++++|+..++++++ .+|++..++..+|.++...|++++|+.+|
T Consensus 493 Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-------l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 493 AIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-------IDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99998864332 223333 34457999999999999998 67888889999999999999999999999
Q ss_pred HHHhccCCCcHH
Q 048034 521 TRLLDYTGPEKE 532 (558)
Q Consensus 521 ~~al~~~~~~~~ 532 (558)
++++++.+...+
T Consensus 566 e~A~~l~~~~~e 577 (615)
T TIGR00990 566 ERAAELARTEGE 577 (615)
T ss_pred HHHHHHhccHHH
Confidence 999998765333
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-30 Score=290.69 Aligned_cols=432 Identities=16% Similarity=0.110 Sum_probs=266.9
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccC--C-hHHHHHHHHHHHHHchhhHHHHHHhhC---CCC-CCc----------hh
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTG--K-KSVFLRCYALYLAGEKRKEEEMIELEG---PLG-KSD----------AV 154 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~--~-~~~~l~~y~~yl~~~~~~~e~~~~~~~---~~~-~~~----------~~ 154 (558)
..+.+|.+++..|++++|..++++... + ........+..... .+..++...... ... ... ..
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS-QGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 455778899999999999998887632 1 11111111111111 111121111100 000 000 11
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHh-------h
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDIL-------N 227 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-------~ 227 (558)
......+...+.......|.++..++.+|.++...|++++|+..|.+++..+|.+..++..++.+....+.. .
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 233445555566666667778888888888888888888888888888888888888888777665322211 1
Q ss_pred cC--CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcch
Q 048034 228 SI--NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVED 305 (558)
Q Consensus 228 ~l--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 305 (558)
.+ ..|.+......++.++...|++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.+...
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 11 1234444445566666667777777777777766666666666666666777777777777777766666666666
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc---
Q 048034 306 MDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--- 382 (558)
Q Consensus 306 ~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--- 382 (558)
+..++.++...|+++++...+++++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..++..+.
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 66666666666777777776666666666666666667777766777777777777776666666666655554443
Q ss_pred ----------------ccchHHHHHhHH---------------------------------HHHHcCCHHHHHHHHHHHH
Q 048034 383 ----------------SIDYRAWYGLGQ---------------------------------AYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 383 ----------------~~~~~~~~~lg~---------------------------------~~~~~~~~~~A~~~~~~a~ 413 (558)
|.+...+..+|. ++...|++++|+..+++++
T Consensus 684 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444 4444555555555555555
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 493 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 493 (558)
...|+++.++..+|.++.. .|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.+++++++ ..
T Consensus 764 ~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~-------~~ 833 (899)
T TIGR02917 764 KTHPNDAVLRTALAELYLA--QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK-------LA 833 (899)
T ss_pred HhCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh-------hC
Confidence 5555555555666666665 6666666666666666666666666666666666666 556666666655 45
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 494 PNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 494 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
|+++..+..+|.++...|++++|..+|+++++.+|.+....
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 874 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIR 874 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 66667777777788888888888888888888777655544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-30 Score=286.41 Aligned_cols=326 Identities=16% Similarity=0.128 Sum_probs=251.4
Q ss_pred hHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHh-------hcC
Q 048034 157 ELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDIL-------NSI 229 (558)
Q Consensus 157 ~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-------~~l 229 (558)
.+..+...+++....+|.++.+++.+|.++...|++++|+..|++++..+|.+..++..++.++...+.. ..+
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 253 (899)
T TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADAL 253 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666666666777888889999999999999999999999999999999998888887776432221 111
Q ss_pred --CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHH
Q 048034 230 --NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMD 307 (558)
Q Consensus 230 --~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 307 (558)
..|.+....+..|.++...|++++|+..++++++..|.....+..+|.+++..|++++|+..|.++++..|.+.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 333 (899)
T TIGR02917 254 LKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARR 333 (899)
T ss_pred HHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 134444555667788888888888888888888888877777777888888888888888888888888888777777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-----
Q 048034 308 MYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK----- 382 (558)
Q Consensus 308 ~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----- 382 (558)
.++.++...|+..++...+.+++..+|.++..+..+|.++...|++++|+.+|++++..+|++...+..+|..+.
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 413 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP 413 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh
Confidence 777777777888888888877777777777777778888888888888888888877777777777766665543
Q ss_pred ------------------------------------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 383 ------------------------------------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 383 ------------------------------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
|.+...|..+|.++...|++++|+.+|+++++
T Consensus 414 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 493 (899)
T TIGR02917 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS 493 (899)
T ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 45566777788888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.+|++..++..+|.++.. .|++++|+..|++++...|.+..++..++.++...|++++|+..++++++
T Consensus 494 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 494 IEPDFFPAAANLARIDIQ--EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred hCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888887 88888888888888877777777777777777777777777777777655
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.3e-29 Score=282.38 Aligned_cols=368 Identities=13% Similarity=0.042 Sum_probs=280.4
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccCC--hHHHHH-HHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHh
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTGK--KSVFLR-CYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTL 168 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~~--~~~~l~-~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (558)
..+.+|+.++..|+|+.|+..+++.... ...-+. .|...+... ......+...++++
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~--------------------~g~~~~A~~~L~~l 173 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKL--------------------PAQRPEAINQLQRL 173 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhC--------------------CccHHHHHHHHHHH
Confidence 3578899999999999999999987432 111111 111111111 11234556667777
Q ss_pred hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHH---HHHHHHhh-----------------hcCHH----
Q 048034 169 RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWN---SWLELQSL-----------------CTTID---- 224 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~-----------------~~~~~---- 224 (558)
....|.++.+++.+|.++...|++++|+..+++++...+.+.. .|...... +....
T Consensus 174 l~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 174 NADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 8888999999999999999999999999999999876553322 22211100 00000
Q ss_pred ---HhhcC--CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcC
Q 048034 225 ---ILNSI--NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRND 299 (558)
Q Consensus 225 ---~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 299 (558)
.+... ...+.......+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 00000 0011111122458889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcch--------------HHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 048034 300 PYRVED--------------MDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK 365 (558)
Q Consensus 300 p~~~~~--------------~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 365 (558)
|.+... ....+.++...|++++|...+++++..+|.++.++..+|.++...|++++|+.+|+++++
T Consensus 334 p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 334 PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 987542 123466778889999999999999999999999999999999999999999999999999
Q ss_pred cCcCCHHHHHHhchhccc---------------------------cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 366 LNKNYLSAWTLMGHEYKS---------------------------IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 366 ~~p~~~~~~~~~~~~~~~---------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
++|++..++..++.++.. -....+..+|.++...|++++|+..|+++++.+|+
T Consensus 414 ~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~ 493 (1157)
T PRK11447 414 MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG 493 (1157)
T ss_pred hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 999999988877765530 00224556788889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
++.++..+|.+|.. .|++++|+..|++++...|.++.+++.++..+...|++++|+..+++
T Consensus 494 ~~~~~~~LA~~~~~--~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 494 SVWLTYRLAQDLRQ--AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999 99999999999999988888877666666655555655555555443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.9e-30 Score=288.57 Aligned_cols=355 Identities=12% Similarity=0.064 Sum_probs=280.5
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHH--HHHHHHhhhcCHHHhhcCCCC
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWN--SWLELQSLCTTIDILNSINLN 232 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~l~~~ 232 (558)
...+..+...+++.+...|.++.+++.+|.++.+.|++++|+..|+++++.+|.+.. .|..+...
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~------------- 348 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV------------- 348 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh-------------
Confidence 345666777777777777888888888888888888888888888888888886643 23222100
Q ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 048034 233 NHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNV 312 (558)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (558)
..+......|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..++.+
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 01111223577888899999999999999999999999999999999999999999999999999999887665544433
Q ss_pred ------------------------------------------HHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc
Q 048034 313 ------------------------------------------LYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK 350 (558)
Q Consensus 313 ------------------------------------------l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~ 350 (558)
+...|++++|...+++++..+|+++.+++.+|.+|...
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34568889999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCcCCHHHHHHhchhcc------------------------------------------------
Q 048034 351 GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK------------------------------------------------ 382 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------------------------------------ 382 (558)
|++++|+..|+++++.+|++..++..++..+.
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 99999999999999999988877655443211
Q ss_pred -----------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048034 383 -----------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 383 -----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~ 451 (558)
|.+...++.+|.++...|++++|+..|+++++.+|+++.++..++.++.. .|++++|+..+++++..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~--~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA--QGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHhcc
Confidence 55666778888888899999999999999999999999999999999988 89999999999988888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 452 NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 452 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.|+++.++..+|.++...|++++|+.+|++++...+... .......++..+|.++...|++++|+.+|++++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~-~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP-PSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888888889988889999999999988887321100 0011334566678888899999999999988874
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.2e-30 Score=269.55 Aligned_cols=325 Identities=13% Similarity=-0.003 Sum_probs=296.5
Q ss_pred hHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHH
Q 048034 157 ELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWM 236 (558)
Q Consensus 157 ~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 236 (558)
++..+...+...+...|.++.+++.+|.+....|++++|+..|++++..+|.+..+|..+
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l-------------------- 116 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV-------------------- 116 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH--------------------
Confidence 344455556666777899999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK 316 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 316 (558)
|.++...|++++|+..|++++...|+++.++..++.++...|++++|+..+++++...|.+...+.... .+...
T Consensus 117 -----a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~ 190 (656)
T PRK15174 117 -----ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNK 190 (656)
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999888776654 47888
Q ss_pred CCHhHHHHHHHHHhhcCCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHH
Q 048034 317 ECFSALSYLAHRVFTTDKY-RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQA 395 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~ 395 (558)
|+.++|...+++++..+|. .......++.++...|++++|+..|++++..+|++. .+++.+|.+
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~ 255 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLA 255 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHH
Confidence 9999999999999988764 344556678899999999999999999999998854 468899999
Q ss_pred HHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 048034 396 YEMMHMPFY----ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 396 ~~~~~~~~~----A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 471 (558)
+...|++++ |+..|++++.++|+++.++..+|.++.. .|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~--~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR--TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 999999986 8999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
+++|+..|++++. ..|.....+..+|.++...|++++|+..|+++++.+|.+.
T Consensus 334 ~~eA~~~l~~al~-------~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 334 YTAASDEFVQLAR-------EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHH-------hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999998 5687777777789999999999999999999999887643
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.6e-30 Score=270.35 Aligned_cols=347 Identities=14% Similarity=0.066 Sum_probs=272.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
...+..+|..++..|++++|+..|.+++...|+ ...|..+ |.+|..+|++++|+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~-------------------------a~~~~~l~~~~~Ai 180 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNR-------------------------AACHNALGDWEKVV 180 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHH-------------------------HHHHHHhCCHHHHH
Confidence 345778899999999999999999999999885 4555554 88999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC------------------------------cch
Q 048034 256 TKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR------------------------------VED 305 (558)
Q Consensus 256 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------------------------------~~~ 305 (558)
..++++++.+|++..++..+|.++...|++++|+..|..+...++.+ ...
T Consensus 181 ~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 181 EDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999988776655433322 111
Q ss_pred HHHHHHHHH------------------------------------hcCCHhHHHHHHHHHhhc---CCCChhHHHHHHHH
Q 048034 306 MDMYSNVLY------------------------------------AKECFSALSYLAHRVFTT---DKYRPESCCIIGNY 346 (558)
Q Consensus 306 ~~~~~~~l~------------------------------------~~~~~~~a~~l~~~~~~~---~~~~~~~~~~lg~~ 346 (558)
...++..+. ..+.++++...+++++.. .|....++..+|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 111111110 114566777778887765 36677788888888
Q ss_pred HhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-------------------ccchHHHHHhHHHHHHcCCHHHHHH
Q 048034 347 YSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-------------------SIDYRAWYGLGQAYEMMHMPFYALH 407 (558)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------------------~~~~~~~~~lg~~~~~~~~~~~A~~ 407 (558)
+...|++++|+..|++++.++|++..+|..+|.++. |.++.+|+.+|.++...|++++|+.
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888999999898888888888888888887665 7788999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 048034 408 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 487 (558)
Q Consensus 408 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 487 (558)
+|++++.++|++...+..+|.++.. +|++++|+..|++++...|+++.++..+|.++...|++++|+..|+++++..+
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYK--EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999998432
Q ss_pred hhhhcCCChHHHHHHHHH-HHHHcCCHHHHHHHHHHHhccCCCcHHHH---HHHHHHHHHhccCCCCC
Q 048034 488 AEEREGPNMVEALIFLAT-HCRAHNRFEDAEVYCTRLLDYTGPEKETA---KSMLRGMRMAQSSFPAM 551 (558)
Q Consensus 488 ~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~ll~~~~~~~~a~~~~ 551 (558)
....... ....+...+. ++...|++++|..++++++.++|.+.... ..++...++..+|+..+
T Consensus 499 ~~~~~~~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 499 ETKPMYM-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred ccccccc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1110001 1112223333 34457999999999999999987765433 33444555555555443
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=5.7e-28 Score=254.16 Aligned_cols=327 Identities=11% Similarity=-0.009 Sum_probs=293.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
+..........+.+.|++++|...+...+...|.+..++..+ +.+....|++++|
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l-------------------------~~~~l~~g~~~~A 95 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRW-------------------------VISPLASSQPDAV 95 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHH-------------------------hhhHhhcCCHHHH
Confidence 344456677888999999999999999999999999999888 8888899999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCC
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDK 334 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~ 334 (558)
+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|+.++|...+.+++...|
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.++..+..++. +...|++++|+..+++++..+|.... .....++.++...|++++|+..|++++.
T Consensus 176 ~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~--------------~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 176 PRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQ--------------ESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred CCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcch--------------hHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99998877654 78899999999999999998764222 2345668889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEE----AIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
..|+++.++..+|.++.. .|++++ |+..|++++..+|+++.++..+|.++...|++++|+..++++++
T Consensus 241 ~~p~~~~~~~~Lg~~l~~--~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~------ 312 (656)
T PRK15174 241 RGLDGAALRRSLGLAYYQ--SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA------ 312 (656)
T ss_pred cCCCCHHHHHHHHHHHHH--cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 999999999999999999 999986 89999999999999999999999999999999999999999998
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH---HHHHHHHHHhccCCCC
Q 048034 491 REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA---KSMLRGMRMAQSSFPA 550 (558)
Q Consensus 491 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~ll~~~~~~~~a~~~ 550 (558)
..|+++.++..+|.++...|++++|+..|++++..+|.+.... ..++...++..+|...
T Consensus 313 -l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 313 -THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 6799999999999999999999999999999999887765322 2334455555555443
No 14
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.4e-26 Score=206.28 Aligned_cols=354 Identities=19% Similarity=0.157 Sum_probs=304.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcC-------CCCchHHHHHHHHHHHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSI-------NLNNHWMKDFFLASTYQ 246 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~ 246 (558)
..|.....++..+..-++..++...|...+...|--..+...+..+.....++.+. .....|...+..+.+..
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~ 207 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM 207 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence 35788888999999888888999999999999998777777776666554444333 34467777777777777
Q ss_pred HHhchHHHHH--HHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHH
Q 048034 247 ELRMHNEALT--KYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSY 324 (558)
Q Consensus 247 ~~~~~~~A~~--~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~ 324 (558)
..++...|.. ++-......|++..++..+|.+++..|++++|+..|+++...+|+....++.|+.++...|+.+....
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 7777766655 45555668999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-------------------ccc
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-------------------SID 385 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------------------~~~ 385 (558)
+....+..+.....-|+.-|...+..+++..|+.+-+++++.+|++..++...|..+. |.+
T Consensus 288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 9999999999999999999999999999999999999999999999998888887766 777
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMA-QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la-~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
.+.|.+|-.+|...|++.+|...-+.++..-|.++..+..+| .++..+ -.--++|.+.+++++.+.|....+...+|.
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d-p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD-PRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC-chhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 888888888888888888888888888888888888888886 443321 445588999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKS 536 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 536 (558)
++...|.+++++..+++.+.. .+ +...+..||+++...+.+++|.++|..++.++|.+....+.
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~-------~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII-------FP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh-------cc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 999999999999999999983 33 46788899999999999999999999999999876655443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-26 Score=232.52 Aligned_cols=360 Identities=17% Similarity=0.158 Sum_probs=290.8
Q ss_pred hhchhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcC----ChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH---
Q 048034 153 AVNRELISLERELSTLRKNGTMDPFILYLYGLVLKDKG----SENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI--- 225 (558)
Q Consensus 153 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--- 225 (558)
..+.+++.....+++..+..|++.....++|..|...+ ..+.|..+..+++...|.+.++|..++.++...+.
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH
Confidence 34667777777788888888888888999998888775 66888888889998889999999888887653322
Q ss_pred ----------hhcC--CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhh-----cCCC-----hHHHHHHHHHHHHcc
Q 048034 226 ----------LNSI--NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGT-----FGFS-----NYLQAQIAKAQYSLR 283 (558)
Q Consensus 226 ----------~~~l--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~-----~~~~~~~a~~~~~~~ 283 (558)
+.+. .+|..|. -+.|..++..|++.+|...|.+++.. +++. ....+++|.++...+
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~L--NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVL--NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHH--HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 1111 1333333 34688888888888888888888765 1111 224778888888888
Q ss_pred cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 048034 284 EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (558)
Q Consensus 284 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 363 (558)
+++.|.+.|..+++..|..++++..++.+....+...++..++..++..+..+|.++..+|++|....++..|..-|...
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 88888888888888888888888888877777788888888888888888888888888888888888888888877777
Q ss_pred HccCcCCHHHHHHhchhccccchHHHHHhHHHHH------------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048034 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE------------MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYE 431 (558)
Q Consensus 364 l~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 431 (558)
++..-... |+-+...||+++. ..+.+++|++.|.++++.+|.|..+-+.+|.|+.
T Consensus 591 ~~~~~~~~-------------D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 591 LKKTSTKT-------------DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLA 657 (1018)
T ss_pred HhhhccCC-------------chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhh
Confidence 66443322 2233444555443 3456789999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 432 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 432 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
. .|++.+|+..|.++.+...+...+|.++|.||..+|+|..|++.|+.+++.+ ...++..++..||+++...|
T Consensus 658 ~--kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf-----~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 658 E--KGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF-----YKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred h--ccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCHHHHHHHHHHHHHhh
Confidence 9 9999999999999998877788999999999999999999999999999965 44677899999999999999
Q ss_pred CHHHHHHHHHHHhccCCCcHHHH
Q 048034 512 RFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 512 ~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
.+.+|.+++.+++.+.|.+....
T Consensus 731 ~~~eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred hHHHHHHHHHHHHHhCCccchHH
Confidence 99999999999999998877654
No 16
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=99.96 E-value=2.9e-29 Score=205.87 Aligned_cols=137 Identities=48% Similarity=0.678 Sum_probs=105.7
Q ss_pred ChHHHHHHHHHHHHHHhhhchhHHhHHHHHHHcCCCCCCCCCCCCcccccCCCCccccccccCccccccccCccCCCCCC
Q 048034 3 LTESCRNELRTAISQLNGRCLYSAAKWAAEQLVGIKQDPAKYTPSNTRFQRGSSSICRRFRTNEISSTLVAGVSYVSTPV 82 (558)
Q Consensus 3 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (558)
+++++|.+||+++++|++|||++||||+||+|+||++.+...++.... ..+......++.+.
T Consensus 5 ~~~~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 66 (142)
T PF04049_consen 5 DLKEIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPS------------------SSPSSSQLSPSSPS 66 (142)
T ss_pred hHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccc------------------cCCCccccCCCChh
Confidence 578999999999999999999999999999999999876542211100 00000011111112
Q ss_pred cccccccchhHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchh
Q 048034 83 MEEDEVVDSDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRE 157 (558)
Q Consensus 83 ~~~~~~~~~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~ 157 (558)
.+..+..|.|.|+||++||++|||+||+++|+++.+++..||++|++||+|+|++.|+..++.++......+|++
T Consensus 67 ~~~~~~~e~d~yllAksyFD~kEy~RaA~~L~~~~s~~~~FL~lYs~YLa~EKr~~Ee~~~~~~~~~~~~~~n~~ 141 (142)
T PF04049_consen 67 EDQLESKEYDKYLLAKSYFDCKEYDRAAHVLKDCKSPKALFLRLYSRYLAGEKRKEEEMEESLGPGDSGQSVNKE 141 (142)
T ss_pred hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHhhhhHhhcCccccchhhhcc
Confidence 222223578999999999999999999999999999999999999999999999999999988877666666654
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-25 Score=209.71 Aligned_cols=239 Identities=16% Similarity=0.098 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 048034 270 YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL 349 (558)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~ 349 (558)
.++...|..++-.|++-.|...|+.++.++|.+...+..++.++...++..+....+..+..++|.++.+|+..|.+++.
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 45566777888889999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048034 350 KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQC 429 (558)
Q Consensus 350 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 429 (558)
.+++++|+.-|++++.++|.+.. ++..++.+.++++++++++..|+.+....|+.++++...|.+
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~---------------~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAei 471 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAY---------------AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEI 471 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 99999999999999999999654 577888899999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHH
Q 048034 430 YETEQLHMLEEAIKCYRRAANCNDS------EAIALNQLAKLHH-ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 502 (558)
Q Consensus 430 ~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 502 (558)
+.. ++++++|++.|.+|+.+.|. ++..+...|.+.. -.+++..|+.+++++++ .+|..-.++..
T Consensus 472 LtD--qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e-------~Dpkce~A~~t 542 (606)
T KOG0547|consen 472 LTD--QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE-------LDPKCEQAYET 542 (606)
T ss_pred Hhh--HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc-------cCchHHHHHHH
Confidence 999 99999999999999999998 5555555554443 24889999999999998 89999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcHH
Q 048034 503 LATHCRAHNRFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 503 la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 532 (558)
||.+..++|+.++|+++|+++..+.....+
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999987543333
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=7.5e-25 Score=219.92 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=261.8
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
......|.+|..+...|++++|+..|.+++..+|.++.++..+ |.++...|++++
T Consensus 33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~g~~~~ 87 (389)
T PRK11788 33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLAL-------------------------GNLFRRRGEVDR 87 (389)
T ss_pred hhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHH-------------------------HHHHHHcCcHHH
Confidence 3455688889999999999999999999999999999888887 999999999999
Q ss_pred HHHHHHHHHhhcCCC----hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHH
Q 048034 254 ALTKYEYLQGTFGFS----NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRV 329 (558)
Q Consensus 254 A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~ 329 (558)
|+..+++++...+.. ..++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|...+.++
T Consensus 88 A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 88 AIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 999999998853332 2567889999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCh-----hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHH
Q 048034 330 FTTDKYRP-----ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFY 404 (558)
Q Consensus 330 ~~~~~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 404 (558)
+...|... ..++.+|..+...|++++|+.+|+++++.+|+.. .+++.+|.++...|++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV---------------RASILLGDLALAQGDYAA 232 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH---------------HHHHHHHHHHHHCCCHHH
Confidence 98887653 3567889999999999999999999999988744 468889999999999999
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048034 405 ALHYFRKSVFLQPND-SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL 483 (558)
Q Consensus 405 A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 483 (558)
|+.+|++++..+|.+ ...+..++.+|.. .|++++|+..++++++..|+.... ..++.++.+.|++++|+..+++++
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l 309 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQA--LGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQL 309 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999988876 4667889999999 999999999999999999977554 889999999999999999999999
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHH--cCCHHHHHHHHHHHhc
Q 048034 484 ERMEAEEREGPNMVEALIFLATHCRA--HNRFEDAEVYCTRLLD 525 (558)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 525 (558)
+ ..|++......++..... .|+.++|+..+++.++
T Consensus 310 ~-------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 310 R-------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred H-------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8 568777665555544422 4588888888877664
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=6.4e-24 Score=228.31 Aligned_cols=228 Identities=13% Similarity=-0.003 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHcCCCCcchHHHH-------HHHHHhcCCHhHHHHHHHHHhhcCCCCh-hHHHHHHHHHhhcCChHHHH
Q 048034 286 EQVEVVFEELLRNDPYRVEDMDMY-------SNVLYAKECFSALSYLAHRVFTTDKYRP-ESCCIIGNYYSLKGQHEKSV 357 (558)
Q Consensus 286 ~~A~~~~~~~l~~~p~~~~~~~~~-------~~~l~~~~~~~~a~~l~~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~A~ 357 (558)
++|+..++.+++..|.+++....+ ...++..++.++|...+++++...+..| .+...+|.+|...|++++|+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 567777777776655444332111 2235677899999999999988865433 24444799999999999999
Q ss_pred HHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC-------------C--HHH
Q 048034 358 VYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN-------------D--SRL 422 (558)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~-------------~--~~~ 422 (558)
.+|++++..+|..... .......++.++...|++++|+..++++....|. + ..+
T Consensus 293 ~~l~~~l~~~p~~~~~-----------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 293 SILTELFYHPETIADL-----------SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHHHHHhhcCCCCCCC-----------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 9999999888764210 1234667788889999999999999999988763 2 356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHH
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 502 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 502 (558)
+..+|.++.. .|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++ ..|++..+++.
T Consensus 362 ~~~~a~~l~~--~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~-------l~Pd~~~l~~~ 432 (765)
T PRK10049 362 QSLLSQVAKY--SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV-------LEPRNINLEVE 432 (765)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCChHHHHH
Confidence 7889999999 99999999999999999999999999999999999999999999999999 67999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcHHH
Q 048034 503 LATHCRAHNRFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 503 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 533 (558)
+|.++...|++++|...++++++..|.+...
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999999998777644
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.4e-24 Score=216.90 Aligned_cols=391 Identities=16% Similarity=0.152 Sum_probs=319.2
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhcc--------CChHH---HHHHHHHHHHHc----hhhHH--HHH-Hh---hCC---
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQT--------GKKSV---FLRCYALYLAGE----KRKEE--EMI-EL---EGP--- 147 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~--------~~~~~---~l~~y~~yl~~~----~~~~e--~~~-~~---~~~--- 147 (558)
-....|..||..|+.+..+.+|+... +.... -+..++.|.+-. +.+.+ +.. .. ...
T Consensus 43 ~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~k 122 (1018)
T KOG2002|consen 43 AWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADK 122 (1018)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHH
Confidence 44467999999999999999999875 22222 223334444221 11111 110 00 000
Q ss_pred ---CCCCc----------hhchhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHH-H
Q 048034 148 ---LGKSD----------AVNRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNS-W 213 (558)
Q Consensus 148 ---~~~~~----------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~ 213 (558)
..... .....+..+.+.+....+..|.+...++.+|.+.+..|+|..|+.+|++++..+|....- .
T Consensus 123 i~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r 202 (1018)
T KOG2002|consen 123 IDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR 202 (1018)
T ss_pred hhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc
Confidence 00000 011225677788888888999999999999999999999999999999999999865322 2
Q ss_pred HHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc---cHHHHHH
Q 048034 214 LELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR---EFEQVEV 290 (558)
Q Consensus 214 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~ 290 (558)
.. .|.|+.++|+.+.|+..|.++++++|.+..++..+|.+-.... .+..+..
T Consensus 203 Ig-------------------------ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 203 IG-------------------------IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ch-------------------------hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 22 2899999999999999999999999999999888888776654 4788999
Q ss_pred HHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCC---CChhHHHHHHHHHhhcCChHHHHHHHHHHHccC
Q 048034 291 VFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDK---YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 291 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 367 (558)
.+.++...+|.++.++..+++.++..+++..+..++..++...- ..++.++.+|..|..+|+|++|..+|.++++.+
T Consensus 258 ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 258 LLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999887663 345679999999999999999999999999999
Q ss_pred cCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC----CHHHHHH
Q 048034 368 KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH----MLEEAIK 443 (558)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~----~~~~A~~ 443 (558)
+++. .-.++++|++|...|+++.|..+|++.+...|++......+|.+|.. .+ ..+.|..
T Consensus 338 ~d~~--------------~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~--~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 338 NDNF--------------VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH--SAKKQEKRDKASN 401 (1018)
T ss_pred CCCc--------------cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh--hhhhhHHHHHHHH
Confidence 9862 23688999999999999999999999999999999999999999998 65 6789999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 444 CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRL 523 (558)
Q Consensus 444 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 523 (558)
+..+++...|.+..+|..+|.++....-+ .++.+|.+++..+...... --+..+.++|..++..|++++|...|.++
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999866554 4499999999877665544 34789999999999999999999999999
Q ss_pred hcc
Q 048034 524 LDY 526 (558)
Q Consensus 524 l~~ 526 (558)
+..
T Consensus 479 ~~~ 481 (1018)
T KOG2002|consen 479 LGK 481 (1018)
T ss_pred hhh
Confidence 875
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=7.2e-24 Score=227.90 Aligned_cols=388 Identities=13% Similarity=0.067 Sum_probs=279.4
Q ss_pred HHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCC
Q 048034 93 FYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNG 172 (558)
Q Consensus 93 ~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 172 (558)
++.++.-+.+.++|+-+..+ +.|.......+..+ .++.+.++ ......++.......
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~-~~~~~~~~---------------------~~~~~~~~~~~y~~~ 372 (987)
T PRK09782 316 VGATLPVLLKEGQYDAAQKL-LATLPANEMLEERY-AVSVATRN---------------------KAEALRLARLLYQQE 372 (987)
T ss_pred HHHHHHHHHhccHHHHHHHH-hcCCCcchHHHHHH-hhccccCc---------------------hhHHHHHHHHHHhcC
Confidence 33447888888888855544 55543333222111 11111122 222333344456667
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCC---HHHHHHHHhhhcCHHH------h-----------------
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWN---WNSWLELQSLCTTIDI------L----------------- 226 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~------~----------------- 226 (558)
|.++..+...+....+.|++++|..+|+++....++- ......|+.++..... +
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 452 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQS 452 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHh
Confidence 8999999999999999999999999999999863321 2233355555432110 0
Q ss_pred -------------hcCC-CCc--hHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHH
Q 048034 227 -------------NSIN-LNN--HWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEV 290 (558)
Q Consensus 227 -------------~~l~-~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 290 (558)
..+. .|. +....+.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+.
T Consensus 453 ~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 453 QLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHH
Confidence 0001 233 55556677877776 778888888888888777643 35556777778888888888
Q ss_pred HHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCC
Q 048034 291 VFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNY 370 (558)
Q Consensus 291 ~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (558)
.|+++....|.. .....++.++...|+..+|...+++++..+|........++......|++++|+..|+++++++|+
T Consensus 531 ~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~- 608 (987)
T PRK09782 531 AWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS- 608 (987)
T ss_pred HHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-
Confidence 888877665543 445667777888888888888888888888777777666666666678888888888888888875
Q ss_pred HHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 371 LSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
.. ++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++.. .|++++|+..|+++++
T Consensus 609 ~~---------------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~--~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 609 AN---------------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD--SGDIAQSREMLERAHK 671 (987)
T ss_pred HH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 33 577788888888888888888888888888888888888888888 8888888888888888
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 048034 451 CNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 451 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
.+|+++.+++++|.++..+|++++|+..|+++++ ..|+...+....|.+.....+++.|.+.+.+...++|..
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-------l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID-------DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 8888888888888888888888888888888887 678888888888888888888888888888888877655
Q ss_pred H
Q 048034 531 K 531 (558)
Q Consensus 531 ~ 531 (558)
.
T Consensus 745 ~ 745 (987)
T PRK09782 745 S 745 (987)
T ss_pred h
Confidence 4
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.6e-25 Score=216.16 Aligned_cols=278 Identities=14% Similarity=0.104 Sum_probs=251.0
Q ss_pred HHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHH
Q 048034 165 LSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLAST 244 (558)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (558)
+.++-...++.++++..+|..|+.+++|++|..+|..+-+..|...+...-. ..+
T Consensus 342 ~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy-------------------------ST~ 396 (638)
T KOG1126|consen 342 FEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY-------------------------STT 396 (638)
T ss_pred HHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH-------------------------HHH
Confidence 3333334566779999999999999999999999999999999765544333 445
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHH
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSY 324 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~ 324 (558)
++.+++.-+---+.+.+++.+|+.|..|..+|.||-.+++++.|+++|+++++++|...-++..++.-+...+.++.|..
T Consensus 397 LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 397 LWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred HHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHH
Confidence 55555554444566678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHH
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFY 404 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 404 (558)
.++.++..+|.+-.+|+.+|.+|.++++++.|.-+|++|+.++|.+. .....+|.++.+.|+.++
T Consensus 477 ~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------------vi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 477 SFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------------VILCHIGRIQHQLKRKDK 541 (638)
T ss_pred HHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------------hHHhhhhHHHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999955 467889999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 405 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 405 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
|+.+|++|+.++|.++...+..|.+++. ++++++|+..+++..++.|++..+++.+|.+|.++|+.+.|+..|.-+.+
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~il~~--~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRASILFS--LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHh--hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999999999988
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=8.2e-24 Score=227.47 Aligned_cols=369 Identities=11% Similarity=-0.009 Sum_probs=293.9
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhccC-ChH-----HHH-HHHHHHHHHch-hhHHHHHHhhCCCCCCchh--ch---h
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQTG-KKS-----VFL-RCYALYLAGEK-RKEEEMIELEGPLGKSDAV--NR---E 157 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~~-~~~-----~~l-~~y~~yl~~~~-~~~e~~~~~~~~~~~~~~~--~~---~ 157 (558)
.....++-...+.|++++|...|+.... +.. ..+ ++-..|..-.. -....+..+..++.....+ .. +
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 3566778888999999999999998743 211 122 22222221111 0011222221112111110 11 1
Q ss_pred HHHHHHHHHHhhhCCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchH
Q 048034 158 LISLERELSTLRKNGTM--DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHW 235 (558)
Q Consensus 158 l~~~~~~l~~~~~~~~~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 235 (558)
...+...+...+...|. ++.+++.+|.++.. |+..+|+..|.+++...|.++. ...
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~-------------------- 514 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRA-------------------- 514 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHH--------------------
Confidence 22344445555666677 89999999999987 8999999999999999997653 333
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 236 MKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
+|.++...|++++|+..|+++....|.+ ..+..+|.++...|++++|+.+|+++++.+|........++..+..
T Consensus 515 -----lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 515 -----VAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI 588 (987)
T ss_pred -----HHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 3777789999999999999988775554 4567889999999999999999999999998886665555555666
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQA 395 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~ 395 (558)
.|++++|...+++++..+|. +..+..+|.++...|++++|+..|++++.++|++. .++..+|.+
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~a 652 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYA 652 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHH
Confidence 69999999999999999996 99999999999999999999999999999999955 468899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
+...|++++|+..|+++++.+|+++.++.++|.++.. .|++++|+.+|++++.+.|++..+....|.+.....+++.|
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~--lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR--LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRF 513 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 513 (558)
.+.+.+... ..+... +....|.++...+++
T Consensus 731 ~~~~~r~~~-------~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 731 HEEVGRRWT-------FSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHhh-------cCccch-hccccchHhhhcccc
Confidence 999999887 556655 667777777777664
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.6e-23 Score=225.24 Aligned_cols=320 Identities=11% Similarity=-0.033 Sum_probs=248.6
Q ss_pred HHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHH
Q 048034 165 LSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLAST 244 (558)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (558)
..+.....|..+.++..+|.++...|++++|+..|++++..+|.+..++..+ +.+
T Consensus 38 ~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l-------------------------a~~ 92 (765)
T PRK10049 38 YNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL-------------------------ILT 92 (765)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHH
Confidence 3444444577788899999999999999999999999999999998888877 777
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH-
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS- 323 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~- 323 (558)
+...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++++..|++......++.++...+..++|.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 77777777777777777777777777 7777777777777777777777777777777777777777666555544433
Q ss_pred ---------------------------------------------HHHHHHhhcCCCChhHH-------HH-HHHHHhhc
Q 048034 324 ---------------------------------------------YLAHRVFTTDKYRPESC-------CI-IGNYYSLK 350 (558)
Q Consensus 324 ---------------------------------------------~l~~~~~~~~~~~~~~~-------~~-lg~~~~~~ 350 (558)
..++.++...|.+|... .. +|. +...
T Consensus 172 ~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~ 250 (765)
T PRK10049 172 AIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLAR 250 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHh
Confidence 33334443323332221 11 333 3566
Q ss_pred CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 048034 351 GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND----SRLWIAM 426 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l 426 (558)
|++++|+..|+++++..+..+. + +...+|.+|...|++++|+..|++++..+|.+ ......+
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~------------~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPP------------W--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCH------------H--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 8888888888888877543221 2 22336889999999999999999999988876 3567778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 048034 427 AQCYETEQLHMLEEAIKCYRRAANCNDS---------------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 491 (558)
Q Consensus 427 a~~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 491 (558)
+.++.. .|++++|+..++++....|. ...++..+|.++...|++++|+..+++++.
T Consensus 317 ~~a~~~--~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~------- 387 (765)
T PRK10049 317 FYSLLE--SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY------- 387 (765)
T ss_pred HHHHHh--cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence 888888 99999999999999988763 234778899999999999999999999998
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 492 EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 492 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
..|.+..++..+|.++...|++++|+..+++++.++|.+....
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence 6799999999999999999999999999999999998875543
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.6e-23 Score=191.67 Aligned_cols=352 Identities=16% Similarity=0.155 Sum_probs=270.9
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCc--------hhchhHHHH-
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSD--------AVNRELISL- 161 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~--------~~~~~l~~~- 161 (558)
.-.|+.|.++-+.|.-..|+..+.++....+.|...|...............-+.+...+.. .+..++.+.
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999999876666655543333222222111111111111110 111222222
Q ss_pred --HHHHHHhhhC-CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHH
Q 048034 162 --ERELSTLRKN-GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKD 238 (558)
Q Consensus 162 --~~~l~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 238 (558)
.+........ -|.++.+-...|.+...+.++++|+..|+...+.+|...+-....
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly---------------------- 302 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY---------------------- 302 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH----------------------
Confidence 2222223333 477888899999999999999999999999999999776655444
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
..++.-..+-.+-.-+-+.+..++.--++....+|..|...++.++|+.+|+++++++|....++..+|.-+..+++
T Consensus 303 ---SN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 303 ---SNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred ---hHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc
Confidence 33333333333333344455556666667777778888888888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH
Q 048034 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM 398 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 398 (558)
...|..-.+++++++|.+-.+|+.+|+.|..++.+.=|+-+|++|++..|+ |.+.|..||.+|.+
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn---------------DsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN---------------DSRLWVALGECYEK 444 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC---------------chHHHHHHHHHHHH
Confidence 888888888888888888999999999999999999999999999999988 66789999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCC
Q 048034 399 MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-------CNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 399 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~-------~~~~~~~~~~~la~~~~~~g~ 471 (558)
+++.++|+++|.+++.....+..++..+|.+|.+ +++.++|..+|++.++ ..|....+...|+.-+.+.++
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~--l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE--LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998899999999999999 9999999999999988 345566678889999999999
Q ss_pred HHHHHHHHHHHHH
Q 048034 472 DEEAAFYYKKDLE 484 (558)
Q Consensus 472 ~~~A~~~~~~al~ 484 (558)
+++|..+..+++.
T Consensus 523 ~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 523 FDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHhc
Confidence 9999999988887
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=2.3e-23 Score=209.15 Aligned_cols=281 Identities=15% Similarity=0.102 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC----cchHHHHHHH
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR----VEDMDMYSNV 312 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~ 312 (558)
..|+.|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ...+..++.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 345568899999999999999999999999999999999999999999999999999998853322 2456778999
Q ss_pred HHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHh
Q 048034 313 LYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 313 l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
+...|++++|...+.+++..+|.+..++..++.++...|++++|+..++++++..|...... ....+..+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------~~~~~~~l 186 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------IAHFYCEL 186 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887643210 12356789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCC
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-AIALNQLAKLHHALGR 471 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~ 471 (558)
|.++...|++++|+.+|+++++..|++...+..+|.++.. .|++++|+..+++++..+|.+ ..++..++.+|...|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999 999999999999999988876 4578899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHH
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSML 538 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll 538 (558)
+++|+..++++++ ..|+.. ....+|.++.+.|++++|...++++++..|.+. .+..++
T Consensus 265 ~~~A~~~l~~~~~-------~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 265 EAEGLEFLRRALE-------EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred HHHHHHHHHHHHH-------hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 9999999999998 456554 448899999999999999999999999986554 444333
No 27
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.5e-22 Score=188.21 Aligned_cols=366 Identities=14% Similarity=0.063 Sum_probs=289.1
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhH-HHHHHhhCCCCCCchhchhHHHHHHHHH----
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKE-EEMIELEGPLGKSDAVNRELISLERELS---- 166 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~-e~~~~~~~~~~~~~~~~~~l~~~~~~l~---- 166 (558)
..|+-|++|+..+++++|...++++.-....-....-.+.+...-.. |+.. +...+.-......+.+.+....+
T Consensus 143 ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~-ll~~l~~a~~~~ed~e~l~~lyel~~~ 221 (611)
T KOG1173|consen 143 ICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFE-LLESLDLAMLTKEDVERLEILYELKLC 221 (611)
T ss_pred eeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHH-HHhcccHHhhhhhHHHHHHHHHHhhhh
Confidence 45666999999999999999999874211110011112233322222 2222 22221111111111111111111
Q ss_pred -------------HhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCc
Q 048034 167 -------------TLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNN 233 (558)
Q Consensus 167 -------------~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~ 233 (558)
..+.....++.+..-.+..++..+++.+-.+.+...+..+|.+..++..-
T Consensus 222 k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~----------------- 284 (611)
T KOG1173|consen 222 KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLH----------------- 284 (611)
T ss_pred hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHH-----------------
Confidence 00111235678899999999999999999999999999999998877543
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Q 048034 234 HWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVL 313 (558)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l 313 (558)
..++.++|+..+-..+-.++.+.+|..+..|+..|..|+..|++.+|..+|.++..++|....++..+|..+
T Consensus 285 --------ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 285 --------IACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred --------HHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 338888998888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhH
Q 048034 314 YAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLG 393 (558)
Q Consensus 314 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg 393 (558)
...+..+++......+.+.-|..-.....+|.-|.+.++++.|..+|.+|+.+.|.+ +-+...+|
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D---------------plv~~Elg 421 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD---------------PLVLHELG 421 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc---------------chhhhhhh
Confidence 999999999999999999999998999999999999999999999999999999984 45788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 394 QAYEMMHMPFYALHYFRKSVFLQ----PN---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 394 ~~~~~~~~~~~A~~~~~~a~~~~----p~---~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
.+.+..+.|.+|..+|+.++..- +. -..++.++|.++.+ ++++++|+.+|++++.+.|.++.++..+|.+|
T Consensus 422 vvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk--l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 422 VVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK--LNKYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred heeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH--HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 99999999999999999998432 22 34568999999999 99999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 467 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 467 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
..+|+++.|+..|.+++. ..|++..+--.|+.+.
T Consensus 500 ~llgnld~Aid~fhKaL~-------l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALA-------LKPDNIFISELLKLAI 533 (611)
T ss_pred HHhcChHHHHHHHHHHHh-------cCCccHHHHHHHHHHH
Confidence 999999999999999998 6788766666666544
No 28
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=5.1e-22 Score=177.86 Aligned_cols=313 Identities=16% Similarity=0.125 Sum_probs=274.6
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
+|.+..-++-+|..++..|++..|+..|..++..+|.+..+++.. |.+|+..|+-
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrR-------------------------aT~yLAmGks 88 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRR-------------------------ATVYLAMGKS 88 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHH-------------------------HHHHhhhcCC
Confidence 345667789999999999999999999999999999998888775 9999999999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHH---------------HHhc
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNV---------------LYAK 316 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~---------------l~~~ 316 (558)
..|+..+.+++++.|+..-+..+.|.++.++|.+++|+.-|+.+++.+|.+.......+.+ .+..
T Consensus 89 k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~ 168 (504)
T KOG0624|consen 89 KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGS 168 (504)
T ss_pred ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999765444333222 2334
Q ss_pred CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 317 ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
|+...+...+..++++.|.++..+...+.+|...|+..+||.-++.+-++..++.+ .++.++.++
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe---------------~~ykis~L~ 233 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE---------------GHYKISQLL 233 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH---------------HHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999888554 688899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH----HHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAM------------AQCYETEQLHMLEEAIKCYRRAANCNDSEAI----ALN 460 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l------------a~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~ 460 (558)
+..|+.+.++...+.+++++|+....+-.. +.-... .++|.++++..++.++.+|..+. ...
T Consensus 234 Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie--~~~~t~cle~ge~vlk~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE--EKHWTECLEAGEKVLKNEPEETMIRYNGFR 311 (504)
T ss_pred HhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence 999999999999999999999976543211 223345 78999999999999999998554 445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHH
Q 048034 461 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 461 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 533 (558)
.+..|+..-|++.+|+....++++ ..|+++.++...|..|.-...|+.|+.-|+++.+.++++...
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~-------~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLD-------IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 577888999999999999999998 789999999999999999999999999999999998766544
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=8.3e-21 Score=200.38 Aligned_cols=353 Identities=12% Similarity=-0.061 Sum_probs=200.7
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhc---CH----HHhhcCCC--CchHHHHHHH
Q 048034 171 NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCT---TI----DILNSINL--NNHWMKDFFL 241 (558)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~----~~~~~l~~--~~~~~~~~~~ 241 (558)
..|..+...|..+.+..+.|+++.|+..|.++++.+|.+..+...++.+.. .. ..+..... +........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 357788899999999999999999999999999999998644334422211 10 01111111 2222222223
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhH
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSA 321 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~ 321 (558)
|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 5566666666666666666666666666666666666666666666666666666666654333 333444434455545
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHH----------------------------------------
Q 048034 322 LSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFR---------------------------------------- 361 (558)
Q Consensus 322 a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~---------------------------------------- 361 (558)
+...+++++..+|.+.+++..+.......|-...|.+..+
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 6666666666666666666665555555554433333322
Q ss_pred --------HHHccCcCCH---HHHHHh-chhcc-----------------------ccchHHH-----------------
Q 048034 362 --------RALKLNKNYL---SAWTLM-GHEYK-----------------------SIDYRAW----------------- 389 (558)
Q Consensus 362 --------~al~~~p~~~---~~~~~~-~~~~~-----------------------~~~~~~~----------------- 389 (558)
..+...+..+ ..+... ..-+. +--..+.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 1111111111 000000 00000 0011122
Q ss_pred -----------------------HHhHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHHH
Q 048034 390 -----------------------YGLGQAYEMMHMPFYALHYFRKSVFLQP---------------NDSRLWIAMAQCYE 431 (558)
Q Consensus 390 -----------------------~~lg~~~~~~~~~~~A~~~~~~a~~~~p---------------~~~~~~~~la~~~~ 431 (558)
..|..+|...+++++|..++++.....| +.......++.++.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 3344455555555555555555544322 11234455566666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 432 TEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 432 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
. .|++.+|.+.+++.+...|.++.++..+|.++...|.+.+|...++.+.. ..|.+..+...+|.++..+|
T Consensus 428 ~--~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~-------l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 428 A--LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES-------LAPRSLILERAQAETAMALQ 498 (822)
T ss_pred H--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------hCCccHHHHHHHHHHHHhhh
Confidence 6 67777777777777777777777777777777777777777777766555 55666777777777777777
Q ss_pred CHHHHHHHHHHHhccCCCcHHH
Q 048034 512 RFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 512 ~~~~A~~~~~~al~~~~~~~~~ 533 (558)
++.+|.....++++..|++...
T Consensus 499 e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 499 EWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hHHHHHHHHHHHHhhCCCchhH
Confidence 7777777777777766665543
No 30
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-21 Score=182.84 Aligned_cols=235 Identities=13% Similarity=0.008 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 236 MKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
....+.|..++-.|+...|...++.++.++|.....+..+|.+|....+-++....|.++..++|.+++.++..+.+.+.
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 34455777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQA 395 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~ 395 (558)
++++++|..-+++++.++|.+...+..++...++.++++++...|+.+.+..|+.++ .+...|.+
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---------------vy~~fAei 471 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---------------VYNLFAEI 471 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---------------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999665 67788899
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPN------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
+..+++|+.|++.|.+|+.+.|. ++..+...|.+..+ -.+++..|+..+++|++++|....++..+|.+..++
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQR 550 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 66666666655543 268999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 048034 470 GRDEEAAFYYKKDLERM 486 (558)
Q Consensus 470 g~~~~A~~~~~~al~~~ 486 (558)
|+.++|+++|++++.+.
T Consensus 551 ~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 551 GKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999999853
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=185.40 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=216.4
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCCCCc-chHHHHHHHHHhc--CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc
Q 048034 274 QIAKAQYSLREFEQVEVVFEELLRNDPYRV-EDMDMYSNVLYAK--ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK 350 (558)
Q Consensus 274 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~l~~~--~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~ 350 (558)
..|-.+.+.|+++.|+++++-.-+.+.... .+-..+..+.+.+ .++..+..++..++.++..++.+..+.|++-+..
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN 503 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec
Confidence 345667888999999998876655544332 2334455555553 5688999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCcCCHHHHHHhchhcc-------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 351 GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
|++++|...|+.++.-+..+..+.+.+|..+. .++..+++.++.+|..+.+..+|++++.+
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999999999998888888876554 56777888888888888888888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 491 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 491 (558)
+..+-|++|.++..+|.+|-+ .|+-.+|..|+-......|.+....-.||..|....-+++|+.+|+++.-
T Consensus 584 ~~slip~dp~ilskl~dlydq--egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal------- 654 (840)
T KOG2003|consen 584 ANSLIPNDPAILSKLADLYDQ--EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL------- 654 (840)
T ss_pred hcccCCCCHHHHHHHHHHhhc--ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-------
Confidence 888888888888888888887 88888888888888888888888888888888888888889998888876
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 048034 492 EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMR 542 (558)
Q Consensus 492 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~ 542 (558)
..|+.......+|.|+.+.|+|.+|.+.|+......|.+.+-.+-+++.++
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 679989999999999999999999999999999888888877776666544
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-20 Score=179.95 Aligned_cols=327 Identities=17% Similarity=0.133 Sum_probs=246.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHH
Q 048034 180 YLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYE 259 (558)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 259 (558)
-..|+..+..|+++.|+..|..++.++|.|.-.+.+- ..+|..+|+|++|++.-.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnr-------------------------saa~a~~~~~~~al~da~ 60 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNR-------------------------SAAYASLGSYEKALKDAT 60 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcch-------------------------HHHHHHHhhHHHHHHHHH
Confidence 3467788888888888888888888888765555443 667777888888888888
Q ss_pred HHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC----------------------
Q 048034 260 YLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE---------------------- 317 (558)
Q Consensus 260 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~---------------------- 317 (558)
+..++.|.-+..|..+|..+.-.|+|++|+..|.+.++.+|++......+..+.....
T Consensus 61 k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~ 140 (539)
T KOG0548|consen 61 KTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN 140 (539)
T ss_pred HHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh
Confidence 8888888878888888888888888888888888888888877666655554431110
Q ss_pred ------CHhH--------------------HHHHHHHHh-----------------hcCCC-------------------
Q 048034 318 ------CFSA--------------------LSYLAHRVF-----------------TTDKY------------------- 335 (558)
Q Consensus 318 ------~~~~--------------------a~~l~~~~~-----------------~~~~~------------------- 335 (558)
.+.. .....-... ...|.
T Consensus 141 ~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~ 220 (539)
T KOG0548|consen 141 YSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV 220 (539)
T ss_pred hhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH
Confidence 0000 000000000 00110
Q ss_pred --ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc--------------------------ccchH
Q 048034 336 --RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--------------------------SIDYR 387 (558)
Q Consensus 336 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------------------------~~~~~ 387 (558)
-....-.+|+..+...+++.|+++|..++.++ ....-+...+..+. ..-..
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak 299 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAK 299 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHH
Confidence 01234578999999999999999999999999 76666677776665 11123
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC--------------------------CHHHHHHHHHHHHHHhcCCHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPN--------------------------DSRLWIAMAQCYETEQLHMLEEA 441 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~--------------------------~~~~~~~la~~~~~~~~~~~~~A 441 (558)
+...+|..|...++++.|+.+|++++.-... -..--..-|..++. .|+|..|
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk--~gdy~~A 377 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK--KGDYPEA 377 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh--ccCHHHH
Confidence 3445788899999999999999998864322 12223455888999 9999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 442 IKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCT 521 (558)
Q Consensus 442 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 521 (558)
+..|.+|+..+|+++..+.+.|.+|.++|.+..|+...+++++ .+|....+|+.-|.++..+.+|++|.+.|.
T Consensus 378 v~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------L~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 378 VKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE-------LDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 789999999999999999999999999999
Q ss_pred HHhccCCCcHHHHHHHHHHH
Q 048034 522 RLLDYTGPEKETAKSMLRGM 541 (558)
Q Consensus 522 ~al~~~~~~~~~~~~ll~~~ 541 (558)
++++.+|.+.+....+-+..
T Consensus 451 eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHhcCchhHHHHHHHHHHH
Confidence 99999977766654444433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=2.7e-20 Score=186.81 Aligned_cols=343 Identities=17% Similarity=0.143 Sum_probs=266.8
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCch
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNH 234 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~ 234 (558)
.++++.+...+.+.++.+|.++..|+.+|.+|..+|+.+++...+-.|-.++|.+++-|..+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l------------------ 213 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL------------------ 213 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH------------------
Confidence 35566777777888888888889999999999999999999998888888999988888887
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC-----cchHHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR-----VEDMDMY 309 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~ 309 (558)
+....++|++..|.-+|.++++..|.+.......+.+|.+.|++..|...|.+++..+|.. .+.....
T Consensus 214 -------adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 214 -------ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred -------HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 8888889999999999999999999998888899999999999999999999999988821 1222333
Q ss_pred HHHHHhcCCHhHHHHHHHHHhh--cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc--cCcCC---------------
Q 048034 310 SNVLYAKECFSALSYLAHRVFT--TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK--LNKNY--------------- 370 (558)
Q Consensus 310 ~~~l~~~~~~~~a~~l~~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~--------------- 370 (558)
+..+...++.+.|...+..++. .+...-+.+..++.++....+++.|......-.. ..++.
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 4555666777888888888777 3344556778888999999999998887765544 11110
Q ss_pred -----------HHH-HHHhchhcc--------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 371 -----------LSA-WTLMGHEYK--------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 371 -----------~~~-~~~~~~~~~--------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
..+ ...++.... ..+...++.++.+|...|++.+|+.+|..++...+.
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 111 111121111 456778999999999999999999999999877654
Q ss_pred -CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhhhhcCCC
Q 048034 419 -DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM--EAEEREGPN 495 (558)
Q Consensus 419 -~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~ 495 (558)
+..+|..+|.||.. +|.+++|+.+|++++...|++.++...|+.++.++|+.++|.+.++....-- .......+.
T Consensus 447 ~~~~vw~~~a~c~~~--l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 447 QNAFVWYKLARCYME--LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred cchhhhHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 46799999999999 9999999999999999999999999999999999999999999888754200 000011233
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 496 MVEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 496 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
..........++.+.|+.++=+......+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45667788999999999988555544444
No 34
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.7e-20 Score=168.68 Aligned_cols=451 Identities=14% Similarity=0.080 Sum_probs=304.8
Q ss_pred HHHHHHHHhhhchhHHhHHHHHHHcCCCCCCCCCCCCccccc-------------------------CCCCccccccccC
Q 048034 11 LRTAISQLNGRCLYSAAKWAAEQLVGIKQDPAKYTPSNTRFQ-------------------------RGSSSICRRFRTN 65 (558)
Q Consensus 11 l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 65 (558)
+...++++...||++....++.+|.++..+++...+.....+ ..-...++|++.+
T Consensus 3 ~ia~~~~~~~~~l~e~v~~~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~ 82 (564)
T KOG1174|consen 3 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNA 82 (564)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhcccccc
Confidence 556789999999999999999999999887654222111000 0011222334444
Q ss_pred ccccccccCccCCCCCCcccccccchhHHHHHHHhhcccchHHHHHHHhhccC----ChHHHHHHHHHHHHHchhhHHHH
Q 048034 66 EISSTLVAGVSYVSTPVMEEDEVVDSDFYLLAKSYFDCREYRRAAHVLRDQTG----KKSVFLRCYALYLAGEKRKEEEM 141 (558)
Q Consensus 66 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~rA~~~l~~~~~----~~~~~l~~y~~yl~~~~~~~e~~ 141 (558)
.+.++|++.+ .+. .++.++..|.+|-..++-+.|+..+....+ +.... -+--.+-.|..+. +++
T Consensus 83 ~~~s~~~S~~------~~~----~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inl-Mla~l~~~g~r~~-~~v 150 (564)
T KOG1174|consen 83 VLVAIESSYP------EFG----DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINL-MLARLQHHGSRHK-EAV 150 (564)
T ss_pred ccccccccCC------Ccc----cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHH-HHHHHHhcccccc-HHH
Confidence 4444554443 222 246889999999999999999999988743 22221 1112333443332 332
Q ss_pred HHhhCCCCCCchhchhHHHHHHHHHH-------------hhhCCCCchHHHH---HHHHHHHhcCChHHHHHHHHHHhhh
Q 048034 142 IELEGPLGKSDAVNRELISLERELST-------------LRKNGTMDPFILY---LYGLVLKDKGSENLARTVLVESVNS 205 (558)
Q Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~l~~-------------~~~~~~~~~~~~~---~~g~~~~~~g~~~~A~~~~~~al~~ 205 (558)
..-...+. .+.-.|..+..-++- .....+.+++.+. ..+.++.....+.-+..++-.-...
T Consensus 151 l~ykevvr---ecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~ 227 (564)
T KOG1174|consen 151 LAYKEVIR---ECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT 227 (564)
T ss_pred HhhhHHHH---hcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc
Confidence 21111100 111111111111111 1123444555432 2233333333344444555555666
Q ss_pred CCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccH
Q 048034 206 YPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREF 285 (558)
Q Consensus 206 ~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 285 (558)
.|+|......+ |.+++..|++.+|+..|+++...+|......-..|..+...|++
T Consensus 228 lr~NvhLl~~l-------------------------ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 228 LRCNEHLMMAL-------------------------GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred CCccHHHHHHH-------------------------hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 67776666665 77777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 048034 286 EQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK 365 (558)
Q Consensus 286 ~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 365 (558)
+.-..+-..++..+.....-+..-+.++|..+++..|..+..++++.+|.+...+...|+.+...|++++|+-.|+.|..
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 77777777777777666666777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCcCCHHHHHHhchhcc-------------------ccchHHHHHhH-HH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 048034 366 LNKNYLSAWTLMGHEYK-------------------SIDYRAWYGLG-QA-YEMMHMPFYALHYFRKSVFLQPNDSRLWI 424 (558)
Q Consensus 366 ~~p~~~~~~~~~~~~~~-------------------~~~~~~~~~lg-~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 424 (558)
+.|.....+..+.|+|. |.+++++..+| .+ ...-..-++|.+++++++.++|....+-.
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 77777777777777776 45555555554 22 23344568999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 048034 425 AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 504 (558)
Q Consensus 425 ~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 504 (558)
.++.++.. .|+++++++.+++++...|+ ...+..+|.++...+.+++|..+|..++. .+|.+..+.-.+-
T Consensus 443 ~~AEL~~~--Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-------~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 443 LIAELCQV--EGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR-------QDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHh--hCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCccchHHHHHHH
Confidence 99999999 99999999999999998876 46788999999999999999999999999 7898888877766
Q ss_pred HHHHHcC
Q 048034 505 THCRAHN 511 (558)
Q Consensus 505 ~~~~~~g 511 (558)
..-....
T Consensus 513 ~lEK~~~ 519 (564)
T KOG1174|consen 513 LLEKSDD 519 (564)
T ss_pred HHHhccC
Confidence 6554443
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=3.2e-23 Score=197.38 Aligned_cols=263 Identities=22% Similarity=0.193 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhh--CCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHH
Q 048034 180 YLYGLVLKDKGSENLARTVLVESVNS--YPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTK 257 (558)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 257 (558)
+.+|.++...|++++|.+++.+.+.. .|.+...|..+ |.+....++++.|+..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~-------------------------a~La~~~~~~~~A~~a 66 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLL-------------------------ADLAWSLGDYDEAIEA 66 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-------------------------cccccccccccccccc
Confidence 35588888888888888888665544 36777777665 7777788888888888
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCCh
Q 048034 258 YEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRP 337 (558)
Q Consensus 258 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~ 337 (558)
|++++...+.++..+..++.+ ...+++++|+.++++..+..++ +
T Consensus 67 y~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-----------------------------------~ 110 (280)
T PF13429_consen 67 YEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD-----------------------------------P 110 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccc-----------------------------------c
Confidence 888888777777777777776 6788888888888777765432 2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
..+.....++...++++++...++++....+. +.++..|..+|.++.+.|++++|+..|+++++.+|
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P 177 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAA-------------PDSARFWLALAEIYEQLGDPDKALRDYRKALELDP 177 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33344445555666666666666665543321 12344566666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH
Q 048034 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 497 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 497 (558)
+++.++..++.++.. .|+++++...+.......|+++..+..+|.++..+|++++|+.+|+++++ ..|+++
T Consensus 178 ~~~~~~~~l~~~li~--~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-------~~p~d~ 248 (280)
T PF13429_consen 178 DDPDARNALAWLLID--MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK-------LNPDDP 248 (280)
T ss_dssp T-HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-------HSTT-H
T ss_pred CCHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc-------cccccc
Confidence 666666666666666 66666666666655555555555666666666666666666666666665 456666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 498 EALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 498 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.++..+|.++...|+.++|..++++++.
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666666666666666666666666554
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.4e-19 Score=175.11 Aligned_cols=321 Identities=15% Similarity=0.143 Sum_probs=277.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
-..|..-+..+.+.+-++-|+.+|..+++.+|.....|... +..-..-|..++-.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra-------------------------~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRA-------------------------AMFEKSHGTRESLE 570 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHH-------------------------HHHHHhcCcHHHHH
Confidence 34677778888899999999999999999999999999886 55555667777778
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCC
Q 048034 256 TKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKY 335 (558)
Q Consensus 256 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~ 335 (558)
.++++++...|....+|...+..+...|+...|..++.++++.+|++.+.+..-..+.+....++.+..++.++....|.
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 88999999999988899999999999999999999999999999998888888888888889999999999888776554
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
..+|+.-+.+...+++.++|+.+++++++..|.+. ..|..+|+++.++++.+.|...|...++.
T Consensus 651 -eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~---------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 651 -ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH---------------KLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred -chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH---------------HHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 57788888888889999999999999999998855 46888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-----
Q 048034 416 QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE----- 490 (558)
Q Consensus 416 ~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----- 490 (558)
.|+.+..|..++.+-.+ .|..-.|...++++.-.+|.+...|.....+-.+.|+.+.|...+.++++.++..+
T Consensus 715 cP~~ipLWllLakleEk--~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEK--DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred CCCCchHHHHHHHHHHH--hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 99999999999999988 89999999999999999999999999999999999999999999999988665432
Q ss_pred ------------------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 048034 491 ------------------REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLR 539 (558)
Q Consensus 491 ------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~ 539 (558)
.....++.++...|..+....++++|.++|.+++..+|...+.+...++
T Consensus 793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 2234567788899999999999999999999999999888887755554
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=4e-20 Score=185.60 Aligned_cols=317 Identities=18% Similarity=0.153 Sum_probs=262.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHH
Q 048034 177 FILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALT 256 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 256 (558)
..++..|+.++..|++++|..++.++++.+|.+..+|..| |.+|..+|+.++++.
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL-------------------------~~IyEqrGd~eK~l~ 194 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTL-------------------------GEIYEQRGDIEKALN 194 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHH-------------------------HHHHHHcccHHHHHH
Confidence 3466667888899999999999999999999999999998 999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC
Q 048034 257 KYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYR 336 (558)
Q Consensus 257 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~ 336 (558)
..-.+-.++|.+...|..++....++|++.+|.-+|.++++.+|.+.......+.++.++|+...|..-+.+++...|..
T Consensus 195 ~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 195 FWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999932
Q ss_pred h-----hHHHHHHHHHhhcCChHHHHHHHHHHHccCc--CCHHHHHHhchhcc---------------------------
Q 048034 337 P-----ESCCIIGNYYSLKGQHEKSVVYFRRALKLNK--NYLSAWTLMGHEYK--------------------------- 382 (558)
Q Consensus 337 ~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~--------------------------- 382 (558)
. ......+.++...++.+.|++.+..++.... ...+....++..++
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 1 2233557788888888999999999988322 11122222222222
Q ss_pred --------------------ccchHH-HHHhHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCHHH
Q 048034 383 --------------------SIDYRA-WYGLGQAYEMMHMPFYALHYFRKSVFLQP-NDSRLWIAMAQCYETEQLHMLEE 440 (558)
Q Consensus 383 --------------------~~~~~~-~~~lg~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~~~~~~~~~ 440 (558)
+.+..+ ...++.+....++..+++..+..--...| +++..+..++..+.. .|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~--~~~~~~ 432 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTN--IGKYKE 432 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHh--cccHHH
Confidence 222333 44555555566666666665544333223 457789999999999 999999
Q ss_pred HHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 048034 441 AIKCYRRAANCNDS-EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVY 519 (558)
Q Consensus 441 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 519 (558)
|+.+|..+....+. +..+|+.+|.||..+|.+++|+.+|++++. ..|++..+...|+.++.++|+.++|.+.
T Consensus 433 Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 433 ALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred HHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 99999999887543 456999999999999999999999999999 7899999999999999999999999999
Q ss_pred HHHHhccC
Q 048034 520 CTRLLDYT 527 (558)
Q Consensus 520 ~~~al~~~ 527 (558)
+.....-+
T Consensus 506 L~~~~~~D 513 (895)
T KOG2076|consen 506 LEQIINPD 513 (895)
T ss_pred HhcccCCC
Confidence 99877444
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=3.5e-20 Score=192.31 Aligned_cols=266 Identities=16% Similarity=0.015 Sum_probs=220.2
Q ss_pred chHHHHHHHHHHHhc---CChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHH----
Q 048034 175 DPFILYLYGLVLKDK---GSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQE---- 247 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---- 247 (558)
+...+|+.|...... +.+++|+..|++++..+|.+..+|..+ |.++..
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~L-------------------------a~~~~~~~~~ 311 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCAL-------------------------AECYLSMAQM 311 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHH-------------------------HHHHHHHHHc
Confidence 456789999866543 457899999999999999999999887 444443
Q ss_pred -----HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHH
Q 048034 248 -----LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSAL 322 (558)
Q Consensus 248 -----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a 322 (558)
.+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 312 g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-------------------- 371 (553)
T PRK12370 312 GIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS-------------------- 371 (553)
T ss_pred CCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------------------
Confidence 3457899999999999999999999999999999999999999999999888776
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCH
Q 048034 323 SYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402 (558)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 402 (558)
+.+++.+|.++...|++++|+..++++++++|.+.. .++.++.++...|++
T Consensus 372 --------------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~---------------~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 372 --------------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA---------------AGITKLWITYYHTGI 422 (553)
T ss_pred --------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHhccCH
Confidence 667888999999999999999999999999999654 344455567778999
Q ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 403 FYALHYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 403 ~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
++|+..+++++... |+++..+..+|.++.. .|++++|+..+.+.....|....++..++..|...| ++|...+++
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~--~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSL--KGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHh--CCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 99999999999775 7889999999999999 999999999999998888888889999999999888 488888888
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 482 DLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 482 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.++... ..+. -...++.++.-.|+.+.|..+ +++.+.
T Consensus 499 ll~~~~----~~~~---~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 499 FLESEQ----RIDN---NPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhh----Hhhc---CchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 776432 1122 222377888888998888887 777664
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.88 E-value=2e-19 Score=179.97 Aligned_cols=302 Identities=12% Similarity=0.011 Sum_probs=242.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHH
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTK 257 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 257 (558)
-....|.+....|+++.|.+.+.++.+..|.....+... |.+....|+++.|...
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~lla-------------------------A~aa~~~g~~~~A~~~ 140 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKA-------------------------AEAAQQRGDEARANQH 140 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHH-------------------------HHHHHHCCCHHHHHHH
Confidence 346678888889999999999988888777655444433 8888888999999999
Q ss_pred HHHHHhhcCCCh-HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC
Q 048034 258 YEYLQGTFGFSN-YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYR 336 (558)
Q Consensus 258 ~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~ 336 (558)
+.++.+..|++. .+....+.++...|+++.|...++++++..|+++.++..++.++...|+++++..++....+....+
T Consensus 141 l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 141 LEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 999888888775 4666678888999999999999999999999999888889999999999998888888888775544
Q ss_pred hhHHH----HHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 337 PESCC----IIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 337 ~~~~~----~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
+.... ....-....+..+++...+.++....|... ++++..+..++..+...|++++|+..++++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~-----------~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHR-----------RHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHH-----------hCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 44332 222222444555666778888888777421 236678999999999999999999999999
Q ss_pred HhcCCCCHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHHH
Q 048034 413 VFLQPNDSRLW--IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA--IALNQLAKLHHALGRDEEAAFYYKK--DLERM 486 (558)
Q Consensus 413 ~~~~p~~~~~~--~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~--al~~~ 486 (558)
++..|++.... ......... .++.+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++|++ +++
T Consensus 290 l~~~pd~~~~~~~~l~~~~~l~--~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-- 365 (409)
T TIGR00540 290 LKKLGDDRAISLPLCLPIPRLK--PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-- 365 (409)
T ss_pred HhhCCCcccchhHHHHHhhhcC--CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh--
Confidence 99999987542 333444445 6889999999999999999999 8899999999999999999999994 655
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 487 EAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 487 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
..|+... +..+|.++.+.|+.++|.++|++++.
T Consensus 366 -----~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 366 -----EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -----cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566544 66999999999999999999999865
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=2.9e-21 Score=185.17 Aligned_cols=255 Identities=18% Similarity=0.194 Sum_probs=208.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
=|..|..+++.|+..+|+-+|+.+++.+|.+.++|..| |.+..+.++-..|+..+
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~L-------------------------G~~qaENE~E~~ai~AL 342 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKL-------------------------GITQAENENEQNAISAL 342 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHh-------------------------hhHhhhccchHHHHHHH
Confidence 47889999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHH-------HHHhcCCHhHHHHHHHHHhh
Q 048034 259 EYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSN-------VLYAKECFSALSYLAHRVFT 331 (558)
Q Consensus 259 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~-------~l~~~~~~~~a~~l~~~~~~ 331 (558)
+++++++|++..++..+|..|...|.-.+|..++.+-+...|........--. .............++-.+..
T Consensus 343 ~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 343 RRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAAR 422 (579)
T ss_pred HHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877653211100000 00011122344455556666
Q ss_pred cCC--CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHH
Q 048034 332 TDK--YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYF 409 (558)
Q Consensus 332 ~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 409 (558)
..| .++++...||.+|...|+|++|+.+|+.||..+|+ |+..|..||-++....+..+|+..|
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn---------------d~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---------------DYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc---------------hHHHHHHhhHHhcCCcccHHHHHHH
Confidence 677 78899999999999999999999999999999988 5567889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHcCCHHHH
Q 048034 410 RKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE----------AIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 410 ~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~----------~~~~~~la~~~~~~g~~~~A 475 (558)
++|+++.|...++++++|.+++. +|.|++|+++|-.||.+.+.. ..+|..|=.++..+++.+-+
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mN--lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMN--LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhh--hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 99999999999999999999999 999999999999999875441 23555555555556665533
No 41
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=5.1e-19 Score=158.74 Aligned_cols=314 Identities=12% Similarity=0.040 Sum_probs=265.6
Q ss_pred hhchhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCC
Q 048034 153 AVNRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLN 232 (558)
Q Consensus 153 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~ 232 (558)
-.+..+..++...-..+..+|.+..++|.+|.+|...|+-.-|+.-+.+++++-|+...+....
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR---------------- 112 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR---------------- 112 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh----------------
Confidence 4566777888888888888999999999999999999999999999999999999998888775
Q ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChH---------------HHHHHHHHHHHcccHHHHHHHHHHHHH
Q 048034 233 NHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNY---------------LQAQIAKAQYSLREFEQVEVVFEELLR 297 (558)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------~~~~~a~~~~~~~~~~~A~~~~~~~l~ 297 (558)
|.+++++|.+++|...|+.++...|.+.. .+......++..|++..|+.....+++
T Consensus 113 ---------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 113 ---------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred ---------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 99999999999999999999998885422 233345566778999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHh
Q 048034 298 NDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLM 377 (558)
Q Consensus 298 ~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 377 (558)
+.|.+.......+.++...|+...|..-+..+.++..++.+.++.++.+++..|+.+.++...+.+++++|++..-+...
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975432211
Q ss_pred chhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 378 GHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 378 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
-.. +...-...-+......++|.+++...++.++.+|..+. ....+..|+.. -+++.+|+..+.+++.++|
T Consensus 264 Kkl---kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~--d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 264 KKL---KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE--DEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHH---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc--cCCHHHHHHHHHHHHhcCc
Confidence 100 00000111233446778999999999999999998543 34556788888 9999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 048034 454 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 503 (558)
Q Consensus 454 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 503 (558)
++..++...|..|.-...|+.|+..|+++.+ .++++..+.-.+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e-------~n~sn~~~reGl 381 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALE-------LNESNTRAREGL 381 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCcccHHHHHHH
Confidence 9999999999999999999999999999998 455555554433
No 42
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=161.79 Aligned_cols=261 Identities=14% Similarity=0.098 Sum_probs=229.8
Q ss_pred HHHHhchHHHHHHHHHHHhhc---C-------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 245 YQELRMHNEALTKYEYLQGTF---G-------FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~---p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
+....+...|-......++.. | .+-+...++|.||+..|-+.+|.+.++..++..|. ++.+..++.+|.
T Consensus 189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ 267 (478)
T KOG1129|consen 189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ 267 (478)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH
Confidence 344555555554444444321 1 12345578999999999999999999999997764 688899999999
Q ss_pred hcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHH
Q 048034 315 AKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQ 394 (558)
Q Consensus 315 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~ 394 (558)
..++...|..++.+.++..|.+....+.++.++..++++++|+++|+.+++.+|.+.++ .-.+|.
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa---------------iAcia~ 332 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA---------------IACIAV 332 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee---------------eeeeee
Confidence 99999999999999999999999999999999999999999999999999999997764 456778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCC
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAIALNQLAKLHHALGR 471 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~ 471 (558)
.|+..++++-|+.+|++.+++.-.+++.++++|.|++. .++++-++.+|++|+....+ -.++|+++|.+....|+
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y--aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY--AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh--hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 88899999999999999999999999999999999999 99999999999999987542 35699999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
+.-|..+|+-++. .++++..++.+||.+-.+.|+.++|..++..+-...|.-
T Consensus 411 ~nlA~rcfrlaL~-------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 411 FNLAKRCFRLALT-------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hHHHHHHHHHHhc-------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9999999999998 789999999999999999999999999999999887643
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=8.5e-19 Score=173.32 Aligned_cols=350 Identities=12% Similarity=0.043 Sum_probs=286.1
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH----h---h-cC---CCCchHHHHHH-
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI----L---N-SI---NLNNHWMKDFF- 240 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----~---~-~l---~~~~~~~~~~~- 240 (558)
.+++.+|-.+...+...|+++.+.+.|++++...-...+.|..++.++...+. + . .. +.|++....++
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 46899999999999999999999999999998888888889888877643221 1 0 01 12333333333
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHHcCCCCcc
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFG-----FSNYLQAQIAKAQYSL-----------REFEQVEVVFEELLRNDPYRVE 304 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~~l~~~p~~~~ 304 (558)
-..+..+.+..++++.+..+++.... -.+..+..+|.+|-.+ ....+++..++++++.+|+|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 34455678889999999999887321 1244566667766543 2357889999999999999999
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhc-CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-
Q 048034 305 DMDMYSNVLYAKECFSALSYLAHRVFTT-DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK- 382 (558)
Q Consensus 305 ~~~~~~~~l~~~~~~~~a~~l~~~~~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~- 382 (558)
+++.++.-+...++...|...+++++.. ..+++..|..++.++...+++..|+.....++...|+|........|+-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 9999999999999999999999999999 66788999999999999999999999999998877774322111111100
Q ss_pred --------------------------------------------------------------------------------
Q 048034 383 -------------------------------------------------------------------------------- 382 (558)
Q Consensus 383 -------------------------------------------------------------------------------- 382 (558)
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence
Q ss_pred ccc-------hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 048034 383 SID-------YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 383 ~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~ 455 (558)
|.. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++.. .|+..+|..+|..|+.++|++
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~--~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEV--KGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHH--HHhhHHHHHHHHHHHhcCCCC
Confidence 111 34677889999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 456 AIALNQLAKLHHALGRDEEAAF--YYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
+.+...+|.++.+.|+..-|.. .+..+++ .+|.++++|+.+|.++.+.|+.++|.++|..++++.+.++
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr-------~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALR-------LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-------hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999888877 8999998 7899999999999999999999999999999999876554
No 44
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=4.3e-21 Score=170.85 Aligned_cols=251 Identities=18% Similarity=0.146 Sum_probs=226.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
|-+--..+|.||.+.|-+.+|.+.++.++...|. ++.+.. ++.+|.+..+...|
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfll-------------------------LskvY~ridQP~~A 275 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLL-------------------------LSKVYQRIDQPERA 275 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHH-------------------------HHHHHHHhccHHHH
Confidence 3444567899999999999999999999998874 333333 39999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCC
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDK 334 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~ 334 (558)
+..+...++.+|.+...+..+|+++..++++++|.++|+.+++.+|.+++++...+.-++.-++.+-|....+++++..-
T Consensus 276 L~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~ 355 (478)
T KOG1129|consen 276 LLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA 355 (478)
T ss_pred HHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.+|+.++++|.|.+..++++-++..|++|+....+... -.++||++|.+....|++.-|..+|+-++.
T Consensus 356 ~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 356 QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 99999999999999999999999999999987654322 347899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
.++++..+++++|.+-.+ .|+.++|..++..|-...|+-.+..++++.+
T Consensus 424 ~d~~h~ealnNLavL~~r--~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAAR--SGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred cCcchHHHHHhHHHHHhh--cCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 999999999999999999 9999999999999999999877777666544
No 45
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=4e-18 Score=165.03 Aligned_cols=374 Identities=16% Similarity=0.079 Sum_probs=298.8
Q ss_pred HHHHhhcccchHHHHHHHhhcc----CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhC
Q 048034 96 LAKSYFDCREYRRAAHVLRDQT----GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKN 171 (558)
Q Consensus 96 la~~~~~~~~~~rA~~~l~~~~----~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 171 (558)
-|.++-..+.++=|..++..+. ..++..++. .++.-.- ...+++...|.++...
T Consensus 522 da~~~~k~~~~~carAVya~alqvfp~k~slWlra--~~~ek~h--------------------gt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRA--AMFEKSH--------------------GTRESLEALLQKAVEQ 579 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHH--HHHHHhc--------------------CcHHHHHHHHHHHHHh
Confidence 3777777777777777766653 233333332 3331111 1234445556677777
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
.|..+.+|.+.+..+...|+...|...+.++++.+|.+.+.|+.- ..+.....++
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa-------------------------vKle~en~e~ 634 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA-------------------------VKLEFENDEL 634 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH-------------------------HHHhhccccH
Confidence 899999999999999999999999999999999999999999875 5566677777
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFT 331 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~ 331 (558)
+.|..+|.++....| ...+|+.-+.....+++.++|+.+++++++..|.....+..++.++..+++.+.+...+...+.
T Consensus 635 eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 635 ERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 888888888777554 4567777777777788888888888888888888888888888888888888888888888888
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
.-|..+..|..++.+-...|..-+|...++++.-.+|++.. .|.....+-.+.|+.+.|.....+
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~---------------lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL---------------LWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch---------------hHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888889999999999999999999999999999988554 677778888899999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 491 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 491 (558)
|++-+|++...|..-....-. -++-..++. |++....++.++..+|.++....++++|...|.++++
T Consensus 779 ALQecp~sg~LWaEaI~le~~--~~rkTks~D----ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk------- 845 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPR--PQRKTKSID----ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK------- 845 (913)
T ss_pred HHHhCCccchhHHHHHHhccC--cccchHHHH----HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 999999999999877766666 666555544 4445677888999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhc
Q 048034 492 EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMAQ 545 (558)
Q Consensus 492 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~~ 545 (558)
.+|++..+|.++-..+...|.-++-.+.+.++..-.|...+.+..+-+.+.+.+
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~n~~ 899 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIKNWR 899 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHHhcc
Confidence 789999999999999999999999999999999999988888877766665443
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=8.8e-22 Score=187.45 Aligned_cols=268 Identities=21% Similarity=0.195 Sum_probs=119.4
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhC
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKN 171 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 171 (558)
..+.+|+.++..|+|+.|..+|++.... ..
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~--------------------------------------------------~~ 39 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQK--------------------------------------------------IA 39 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc--------------------------------------------------cc
Confidence 5667899999999999999998643100 00
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
+|.++..|..+|.+....|++++|+..|++++..++.+...+..+ +.+ ...+++
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l-------------------------~~l-~~~~~~ 93 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL-------------------------IQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-------------------------ccc-cccccc
Confidence 256678889999999999999999999999999999888877766 555 689999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFT 331 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~ 331 (558)
++|+..+.+..+..+ ++..+.....++...++++++...++++....+
T Consensus 94 ~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~------------------------------- 141 (280)
T PF13429_consen 94 EEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA------------------------------- 141 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T--------------------------------
T ss_pred ccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-------------------------------
Confidence 999999999887664 566677788889999999999999999875332
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
.+.++..|..+|.++...|+.++|+.+|+++++++|++.. ++..++.++...|+++++...+..
T Consensus 142 -~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------------~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 142 -APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------------ARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCChHHHHHHHHH
Confidence 1244788999999999999999999999999999999554 677888899999999998888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
.....|.++..|..+|.++.. +|++++|+.+|++++..+|+++..+..+|.++...|+.++|..++.++++.
T Consensus 206 ~~~~~~~~~~~~~~la~~~~~--lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 206 LLKAAPDDPDLWDALAAAYLQ--LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHH-HTSCCHCHHHHHHHHH--HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHCcCHHHHHHHHHHHhcc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888899999999999999 999999999999999999999999999999999999999999999998874
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=2.1e-19 Score=171.23 Aligned_cols=241 Identities=14% Similarity=0.064 Sum_probs=185.5
Q ss_pred HhchHHHHHHHHHHHhhcC----CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 248 LRMHNEALTKYEYLQGTFG----FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
.+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--------------------- 97 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--------------------- 97 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------------
Confidence 3566778888888886433 235678888888889999999998888888877765
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHH
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPF 403 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 403 (558)
+.+|+.+|.++...|++++|+..|+++++++|++.. +|.++|.++...|+++
T Consensus 98 -------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 98 -------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------------AYLNRGIALYYGGRYE 149 (296)
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHH
Confidence 678899999999999999999999999999999654 6889999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL 483 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 483 (558)
+|+..|+++++.+|+++.... ...+... .+++++|+..+.++....+... |. .+.+....|+..++ ..++.+.
T Consensus 150 eA~~~~~~al~~~P~~~~~~~-~~~l~~~--~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 150 LAQDDLLAFYQDDPNDPYRAL-WLYLAES--KLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHH-HHHHHHc--cCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHH
Confidence 999999999999999984222 1223445 7899999999988775543222 22 45666667777554 3455554
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 048034 484 ERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMA 544 (558)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~ 544 (558)
+.++......|....+|+++|.++.+.|++++|+.+|+++++.+|++.-+.+..+-++...
T Consensus 223 ~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 223 AGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 4322222244667889999999999999999999999999999987777776655544444
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.86 E-value=2e-18 Score=172.86 Aligned_cols=291 Identities=10% Similarity=-0.032 Sum_probs=234.8
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCH-HHHHHHHhhhcCHHHhhcCCCCc
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNW-NSWLELQSLCTTIDILNSINLNN 233 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~l~~~~ 233 (558)
.++...+.+.+.+..+..|.....+.+.|.++..+|+++.|..+|.++.+..|.+. .+....
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~----------------- 159 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR----------------- 159 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH-----------------
Confidence 44566677777776666677677778889999999999999999999999888875 343333
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHH-HH
Q 048034 234 HWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYS-NV 312 (558)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~-~~ 312 (558)
+.++...|+++.|+..++++.+..|+++.++..++.++...|++++|.+.+.+..+....+......+. ..
T Consensus 160 --------a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (409)
T TIGR00540 160 --------TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA 231 (409)
T ss_pred --------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999987554444332111 11
Q ss_pred ---HHhcCCHhHHHHHHHHHhhcCC----CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccc
Q 048034 313 ---LYAKECFSALSYLAHRVFTTDK----YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSID 385 (558)
Q Consensus 313 ---l~~~~~~~~a~~l~~~~~~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 385 (558)
+...+..++....+..+....| .++..+..+|..+...|++++|...++++++..|++...
T Consensus 232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~------------ 299 (409)
T TIGR00540 232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI------------ 299 (409)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc------------
Confidence 1222333333445555566566 689999999999999999999999999999999986531
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCcHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYR--RAANCNDSEAIALNQ 461 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~~~~~~~~A~~~~~--~al~~~~~~~~~~~~ 461 (558)
.............++.+.++..++++++..|+++ .....+|.++.. .|++++|.++|+ .+++..|+... +..
T Consensus 300 -~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~--~~~~~~A~~~le~a~a~~~~p~~~~-~~~ 375 (409)
T TIGR00540 300 -SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK--HGEFIEAADAFKNVAACKEQLDAND-LAM 375 (409)
T ss_pred -hhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH--cccHHHHHHHHHHhHHhhcCCCHHH-HHH
Confidence 0012223333446788999999999999999999 889999999999 999999999999 57788887666 559
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 462 LAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 462 la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
+|.++.+.|+.++|..+|++++...
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-18 Score=163.38 Aligned_cols=400 Identities=15% Similarity=0.091 Sum_probs=283.9
Q ss_pred HHHHhhcccchHHHHHHHhhccC--ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCC
Q 048034 96 LAKSYFDCREYRRAAHVLRDQTG--KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGT 173 (558)
Q Consensus 96 la~~~~~~~~~~rA~~~l~~~~~--~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 173 (558)
-|.+.|..|+|+.|+.++.++.. +.... +|+.-.+.. ..-..+..++++-.+....+|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv--lySnrsaa~------------------a~~~~~~~al~da~k~~~l~p 67 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHV--LYSNRSAAY------------------ASLGSYEKALKDATKTRRLNP 67 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccc--hhcchHHHH------------------HHHhhHHHHHHHHHHHHhcCC
Confidence 47888999999999999998743 22221 111100000 011234444555556667789
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH-hhcCCCCchHHHHHH-------H----
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI-LNSINLNNHWMKDFF-------L---- 241 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~-------~---- 241 (558)
.-+..|..+|..+...|+|++|+..|.+.|..+|.|......|+........ .+....|.-|+..-. +
T Consensus 68 ~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 68 DWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred chhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 9999999999999999999999999999999999999998888766511100 000111111111000 0
Q ss_pred -HHH-------------HHHHhchHHHHHHHHHH---------H-----hhcCC---------------------ChHHH
Q 048034 242 -AST-------------YQELRMHNEALTKYEYL---------Q-----GTFGF---------------------SNYLQ 272 (558)
Q Consensus 242 -a~~-------------~~~~~~~~~A~~~~~~~---------~-----~~~p~---------------------~~~~~ 272 (558)
... ++.......|.-.+..+ . ...|. -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 000 00000001111110000 0 00110 01234
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC-------hhHHHHHHH
Q 048034 273 AQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYR-------PESCCIIGN 345 (558)
Q Consensus 273 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~-------~~~~~~lg~ 345 (558)
..+|...+...++..|++.|..++.++ .+...+...+.+++..+.+.........+++..... ......+|.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999999 888888999999999999988888877766554432 223345777
Q ss_pred HHhhcCChHHHHHHHHHHHccCcC--CHHHHHHhc--------hhcc-ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 346 YYSLKGQHEKSVVYFRRALKLNKN--YLSAWTLMG--------HEYK-SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~--------~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.|...++++.|+.+|++++....+ ........- ..++ |.-..--..-|..++..|+|..|+..|.+|+.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 888999999999999999876544 211111100 0111 44445556679999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
.+|+++..|.+.|.||.+ +|.+..|++..+++++++|+...+|...|.++..+.+|++|.+.|+++++ .+|
T Consensus 387 r~P~Da~lYsNRAac~~k--L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale-------~dp 457 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLK--LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE-------LDP 457 (539)
T ss_pred cCCchhHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999 789
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 495 NMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.+..+.-.+.+|...+.......+..++++.
T Consensus 458 ~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~ 488 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVEAQRGDETPEETKRRAMA 488 (539)
T ss_pred hhHHHHHHHHHHHHHhhcCCCHHHHHHhhcc
Confidence 9999999999998876555666666666543
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.6e-20 Score=168.16 Aligned_cols=278 Identities=17% Similarity=0.074 Sum_probs=243.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHH
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTK 257 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 257 (558)
-..-.|..+++..+|.+|+..|..++..+|++...|..- +.+++..|++++|...
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nR-------------------------Aa~~m~~~~~~~a~~d 105 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNR-------------------------AATLMMLGRFEEALGD 105 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchh-------------------------HHHHHHHHhHhhcccc
Confidence 345567788899999999999999999999998888765 8899999999999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHH------------HcC------CCCcchHHHHHHHHHhcCCH
Q 048034 258 YEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELL------------RND------PYRVEDMDMYSNVLYAKECF 319 (558)
Q Consensus 258 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l------------~~~------p~~~~~~~~~~~~l~~~~~~ 319 (558)
.++.+++.|.........+.++...++..+|...++..- .+- |.-..+...-+.++...++.
T Consensus 106 ar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~ 185 (486)
T KOG0550|consen 106 ARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDY 185 (486)
T ss_pred hhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccc
Confidence 999999999999899999999999999888886665221 111 22334556678889999999
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 399 (558)
+++......+++.++.+.++.+..|.+++..++.+.|+.+|++++.++|++..+-...-. ++....|..-|.-.++.
T Consensus 186 ~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~---~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM---PKKLEVKKERGNDAFKN 262 (486)
T ss_pred hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh---HHHHHHHHhhhhhHhhc
Confidence 999999999999999999999999999999999999999999999999997765332211 55567888899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 400 HMPFYALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
|++..|.+.|..++.++|++ +..|.+++.+... +|+..+|+...+.++.+++....++...|.++..++++++|
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r--Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~A 340 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR--LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEA 340 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc--cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 4678899999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 048034 476 AFYYKKDLER 485 (558)
Q Consensus 476 ~~~~~~al~~ 485 (558)
++.|+++++.
T Consensus 341 V~d~~~a~q~ 350 (486)
T KOG0550|consen 341 VEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHhh
Confidence 9999999984
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=8.6e-20 Score=175.15 Aligned_cols=265 Identities=15% Similarity=0.058 Sum_probs=212.1
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
|-.|..+++.|+..+|.-.|+.++..+|.+.++|..+|.+....++-..|+..++++++++|++.+++..++..+...+.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhHHHHHHHHHhhcCCCChhHHH-------HHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHH
Q 048034 319 FSALSYLAHRVFTTDKYRPESCC-------IIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYG 391 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~~~~~~~-------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 391 (558)
-..|...+.+-+...|.....-. ....-......+..-.+.|-.+....|. ..++++...
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-------------~~DpdvQ~~ 435 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-------------KIDPDVQSG 435 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-------------CCChhHHhh
Confidence 88888888887766653211100 0000111112233445566666666664 236788999
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 471 (558)
||.+|...|+|++|+.+|+.|+..+|+|..+|+.||..+.. ..+.++|+..|++|+++.|....+++++|..++.+|.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN--~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN--GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC--CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC---CChHHHHHHHHHHHHHcCCHHHHHH
Q 048034 472 DEEAAFYYKKDLERMEAEEREG---PNMVEALIFLATHCRAHNRFEDAEV 518 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~ 518 (558)
|++|+.+|-.++...+...... ..+..+|-.|=.++...++.+-+..
T Consensus 514 ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999999999655422111 1123456655566666666654443
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=5e-19 Score=183.71 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc---------CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHH
Q 048034 285 FEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK---------ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEK 355 (558)
Q Consensus 285 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~---------~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 355 (558)
+++|+.+|+++++.+|++..++..++.++... ++..+|...+++++..+|.++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 44555555555555555555444444443322 234566666666666677778899999999999999999
Q ss_pred HHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 048034 356 SVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL 435 (558)
Q Consensus 356 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 435 (558)
|+.+|+++++++|++.. +++.+|.++...|++++|+..++++++++|.++..+..++.++.. .
T Consensus 357 A~~~~~~Al~l~P~~~~---------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~--~ 419 (553)
T PRK12370 357 GSLLFKQANLLSPISAD---------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY--H 419 (553)
T ss_pred HHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh--c
Confidence 99999999999999554 688899999999999999999999999999998887777878888 9
Q ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHH
Q 048034 436 HMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFE 514 (558)
Q Consensus 436 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 514 (558)
|++++|+..+++++... |+++.++..+|.++..+|++++|...+.+... ..|....+...++..|...|+
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~-- 490 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-------QEITGLIAVNLLYAEYCQNSE-- 490 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-------ccchhHHHHHHHHHHHhccHH--
Confidence 99999999999999875 77888999999999999999999999998776 567778888889999988884
Q ss_pred HHHHHHHHHhc
Q 048034 515 DAEVYCTRLLD 525 (558)
Q Consensus 515 ~A~~~~~~al~ 525 (558)
+|...+++.++
T Consensus 491 ~a~~~l~~ll~ 501 (553)
T PRK12370 491 RALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=2.5e-17 Score=174.21 Aligned_cols=379 Identities=10% Similarity=-0.078 Sum_probs=254.5
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhccCChHH---HHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHH
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGKKSV---FLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELST 167 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~---~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 167 (558)
...|..|-..+..|+|+.|+..|+++....+. .+.-+..++.. .+ ....+...+++
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~G--------------------~~~~A~~~~ek 93 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-AG--------------------RDQEVIDVYER 93 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH-cC--------------------CcHHHHHHHHH
Confidence 47889999999999999999999998532221 11122222211 11 22334444555
Q ss_pred hhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH-------hhcCC--CCchHHHH
Q 048034 168 LRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI-------LNSIN--LNNHWMKD 238 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------~~~l~--~~~~~~~~ 238 (558)
.....+........+|.++...|++++|++.|+++++.+|.+..++..++.+....+. +..+. .|.....
T Consensus 94 a~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 94 YQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 5543455555666668899999999999999999999999999999887554432211 11111 2222221
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------------------
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRND------------------- 299 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------- 299 (558)
..++.++...++..+|+..++++++.+|++..++..+..++...|-...|.++..+--...
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~ 252 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRM 252 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhh
Confidence 2234444445555557777777777777777777777777777777777776666321000
Q ss_pred -----------------------------CCCcch-------HHHHHHHHHhcCCHhHHHHHHHHHhhcC-CCChhHHHH
Q 048034 300 -----------------------------PYRVED-------MDMYSNVLYAKECFSALSYLAHRVFTTD-KYRPESCCI 342 (558)
Q Consensus 300 -----------------------------p~~~~~-------~~~~~~~l~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~ 342 (558)
+..++. ..-...++...++..++...++.+.... +-.+.+...
T Consensus 253 a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 253 AVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 000100 0001112223344444444444443333 234456667
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcC------CHHHHHHhchhcc----------------------------------
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKN------YLSAWTLMGHEYK---------------------------------- 382 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~---------------------------------- 382 (558)
+|..|...++.++|+..|+.++.-.|. .......+...++
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 888888888888888888888775421 1111122222222
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 462 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 462 (558)
|+-..+...++.++...|++.+|+..+++.+...|.|+.++..+|.++.. .|.+.+|...++.+..++|++..+...+
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~--Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA--RDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 33345677789999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHH
Q 048034 463 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL 500 (558)
Q Consensus 463 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 500 (558)
|.++..+|++.+|.....++++ ..|++..+.
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~-------~~Pe~~~~~ 521 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVIS-------RSPEDIPSQ 521 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-------hCCCchhHH
Confidence 9999999999999999999998 557666443
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.84 E-value=2e-17 Score=164.62 Aligned_cols=301 Identities=13% Similarity=0.051 Sum_probs=213.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHH
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTK 257 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 257 (558)
-.+..|......|++++|.+...+.-...+ ++.....+ .+.+....|+++.|...
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~ll------------------------aA~aA~~~g~~~~A~~~ 140 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLL------------------------AAEAAQQRGDEARANQH 140 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHH------------------------HHHHHHHCCCHHHHHHH
Confidence 355667777777777777766665444221 22222222 25555777777777777
Q ss_pred HHHHHhhcCCChHH-HHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC
Q 048034 258 YEYLQGTFGFSNYL-QAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYR 336 (558)
Q Consensus 258 ~~~~~~~~p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~ 336 (558)
+.++.+..|++... ....+.++...|++++|+..++++.+.+|+++.++..++.++...|+++++..++..+.+..+.+
T Consensus 141 l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~ 220 (398)
T PRK10747 141 LERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD 220 (398)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Confidence 77777777766433 23347777777777777777777777777777777777777777777777777777776666554
Q ss_pred hhHHH-HHHHHH---hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 337 PESCC-IIGNYY---SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 337 ~~~~~-~lg~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
+.... ..+..+ ............+.+.++..|... |+++.+...++..+...|+.++|...++++
T Consensus 221 ~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-----------~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 221 EEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-----------RHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-----------hCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44222 111111 111111122333444443333311 336668889999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhc
Q 048034 413 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 492 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 492 (558)
++ .|.++......+.+ . .++.+++++..++.++..|+++..+..+|.++...|++++|..+|+++++ .
T Consensus 290 l~-~~~~~~l~~l~~~l--~--~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-------~ 357 (398)
T PRK10747 290 LK-RQYDERLVLLIPRL--K--TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-------Q 357 (398)
T ss_pred Hh-cCCCHHHHHHHhhc--c--CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------c
Confidence 99 45566555555544 4 69999999999999999999999999999999999999999999999998 5
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 493 GPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 493 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.|+. ..+..++.++.+.|+.++|..+|++++.+.
T Consensus 358 ~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 358 RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6764 456789999999999999999999998753
No 55
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.84 E-value=7e-16 Score=167.79 Aligned_cols=318 Identities=11% Similarity=0.012 Sum_probs=247.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCC-CHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPW-NWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
.|...|..+-..|.+.|+.++|..+|.++.+.... +...|..+ ...|.+.|+++
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL-------------------------I~gy~k~G~~e 524 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL-------------------------IDGCARAGQVA 524 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------HHHHHHCcCHH
Confidence 35556666666666666666666666666554321 34444443 77889999999
Q ss_pred HHHHHHHHHHhh-cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 253 EALTKYEYLQGT-FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN----DPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 253 ~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
+|+..|+.+... ...+...+..+...+.+.|++++|.++|.++... .|+ ...+..+...+...|+.++|..+++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999998763 2235678888999999999999999999999763 343 4566677778889999999999999
Q ss_pred HHhhcC-CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHH
Q 048034 328 RVFTTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 328 ~~~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
.+.+.+ +.++.+|..+...|.+.|++++|+..|++..+..-. .+...|..+...|.+.|++++|.
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~--------------PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK--------------PDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 988876 457789999999999999999999999998875311 12346888899999999999999
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 407 HYFRKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 407 ~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.+++++.+.. +.+...+..+...|.+ .|++++|...|+++.... ..+...|..+...|.+.|++++|.++|+++.+
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k--~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSN--AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998764 4567889999999999 999999999999886542 33567899999999999999999999999876
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcHHHHHHHHH
Q 048034 485 RMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT-GPEKETAKSMLR 539 (558)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ll~ 539 (558)
. +..|+ ...+..+...+.+.|++++|..++.++.+.. .++......++.
T Consensus 748 ~-----Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 748 L-----GLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred c-----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2 13344 5677777789999999999999999998743 234444555543
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=2.9e-17 Score=163.48 Aligned_cols=282 Identities=12% Similarity=0.032 Sum_probs=226.8
Q ss_pred HHHHHHHHHHhhhCCCCchHHHHHH-HHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHH
Q 048034 158 LISLERELSTLRKNGTMDPFILYLY-GLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWM 236 (558)
Q Consensus 158 l~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 236 (558)
...+.+.+.+.... ...|.+++++ +....+.|+++.|..+|.++.+.+|++..+...+
T Consensus 100 ~~~A~k~l~~~~~~-~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~-------------------- 158 (398)
T PRK10747 100 YQQVEKLMTRNADH-AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEIT-------------------- 158 (398)
T ss_pred HHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHH--------------------
Confidence 33444444443322 2346666666 5555999999999999999999999875443222
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH-------
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY------- 309 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~------- 309 (558)
.+.++...|+++.|+..++++.+..|+++.++..++.+|...|++++|+..+.++.+..+.+......+
T Consensus 159 ----~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 159 ----RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred ----HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 288999999999999999999999999999999999999999999999999999998877654433311
Q ss_pred -HHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHH
Q 048034 310 -SNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRA 388 (558)
Q Consensus 310 -~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 388 (558)
........+.+......+......|.++.+...++..+...|+.++|...++++++..++ .. .
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~-~~---------------l 298 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD-ER---------------L 298 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HH---------------H
Confidence 111122244556666666666677889999999999999999999999999999995443 22 2
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 468 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 468 (558)
....+. ...+++++++...++.++..|+++..+..+|.++.. .+++++|.+.|+++++..|++.. +..++.++.+
T Consensus 299 ~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~--~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~ 373 (398)
T PRK10747 299 VLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK--HGEWQEASLAFRAALKQRPDAYD-YAWLADALDR 373 (398)
T ss_pred HHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH
Confidence 222222 245999999999999999999999999999999999 99999999999999999998654 5689999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 048034 469 LGRDEEAAFYYKKDLER 485 (558)
Q Consensus 469 ~g~~~~A~~~~~~al~~ 485 (558)
+|+.++|..+|++++..
T Consensus 374 ~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 374 LHKPEEAAAMRRDGLML 390 (398)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999999874
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=4.1e-18 Score=162.44 Aligned_cols=231 Identities=13% Similarity=0.062 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhhhCC----CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCc
Q 048034 158 LISLERELSTLRKNG----TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNN 233 (558)
Q Consensus 158 l~~~~~~l~~~~~~~----~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~ 233 (558)
.+.....+.+.+... +..+..|+.+|.++...|++++|+..|.++++.+|.+..+|..+
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l----------------- 104 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYL----------------- 104 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH-----------------
Confidence 333444444444322 33467899999999999999999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Q 048034 234 HWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVL 313 (558)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l 313 (558)
|.++...|++++|+..|+++++++|++..++..+|.+++..|++++|+..|+++++.+|+++..
T Consensus 105 --------g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-------- 168 (296)
T PRK11189 105 --------GIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-------- 168 (296)
T ss_pred --------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--------
Confidence 9999999999999999999999999999999999999999999999999999999999986410
Q ss_pred HhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhH
Q 048034 314 YAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLG 393 (558)
Q Consensus 314 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg 393 (558)
..| ..+....+++++|+..|.++....+.. .|. .+
T Consensus 169 ------------------------~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~-----------------~~~-~~ 203 (296)
T PRK11189 169 ------------------------ALW---LYLAESKLDPKQAKENLKQRYEKLDKE-----------------QWG-WN 203 (296)
T ss_pred ------------------------HHH---HHHHHccCCHHHHHHHHHHHHhhCCcc-----------------ccH-HH
Confidence 111 122345678888888887766443221 121 23
Q ss_pred HHHHHcCCHHHH--HHHHH----HHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHH
Q 048034 394 QAYEMMHMPFYA--LHYFR----KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-SEAIALNQLAKLH 466 (558)
Q Consensus 394 ~~~~~~~~~~~A--~~~~~----~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~ 466 (558)
.++..+|+...+ +..+. ...++.|..+.+|+++|.++.. .|++++|+.+|++++..+| +.....+.+..+.
T Consensus 204 ~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~--~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 204 IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLS--LGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 444455555433 22222 2234556667788889999988 8999999999999988886 5555555444444
Q ss_pred HH
Q 048034 467 HA 468 (558)
Q Consensus 467 ~~ 468 (558)
..
T Consensus 282 ~~ 283 (296)
T PRK11189 282 LL 283 (296)
T ss_pred HH
Confidence 43
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.82 E-value=6.9e-18 Score=144.17 Aligned_cols=206 Identities=19% Similarity=0.205 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 048034 270 YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL 349 (558)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~ 349 (558)
.+...+|.-|+..|++..|...++++++.+|+. ..+|..++.+|..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~----------------------------------~~a~~~~A~~Yq~ 81 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSY----------------------------------YLAHLVRAHYYQK 81 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----------------------------------HHHHHHHHHHHHH
Confidence 467788999999999999999999999888876 5688889999999
Q ss_pred cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Q 048034 350 KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL--QPNDSRLWIAMA 427 (558)
Q Consensus 350 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la 427 (558)
.|+.+.|-+.|++|+.++|++.+ ++++.|..++.+|++++|..+|++|+.. .+..+..|.++|
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~~Gd---------------VLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G 146 (250)
T COG3063 82 LGENDLADESYRKALSLAPNNGD---------------VLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLG 146 (250)
T ss_pred cCChhhHHHHHHHHHhcCCCccc---------------hhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhH
Confidence 99999999999999999998554 6888889999999999999999999874 355678899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 428 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 428 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
.|..+ .|+++.|...|+++++.+|+.+.....++..+++.|++-.|..++++... ..+.....+....++-
T Consensus 147 ~Cal~--~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~-------~~~~~A~sL~L~iria 217 (250)
T COG3063 147 LCALK--AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ-------RGGAQAESLLLGIRIA 217 (250)
T ss_pred HHHhh--cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh-------cccccHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999998887 3445677777778888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCcHHH
Q 048034 508 RAHNRFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 508 ~~~g~~~~A~~~~~~al~~~~~~~~~ 533 (558)
...|+-+.|.+|=.+.....|...+.
T Consensus 218 k~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 218 KRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88999999998888888877665543
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.82 E-value=1.4e-16 Score=154.93 Aligned_cols=411 Identities=12% Similarity=0.031 Sum_probs=272.6
Q ss_pred cchhHHHHHHHhhcccchHHHHHHHhhccC-----ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHH
Q 048034 89 VDSDFYLLAKSYFDCREYRRAAHVLRDQTG-----KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLER 163 (558)
Q Consensus 89 ~~~~~~~la~~~~~~~~~~rA~~~l~~~~~-----~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~ 163 (558)
.|.+.|.-+--.|..|+|...+.+.+.... +.+.-+.....+-.|++ .++..
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-----------------------~ea~~ 62 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-----------------------EEAYE 62 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-----------------------HHHHH
Confidence 356777778889999999999988776521 22222222111111211 12222
Q ss_pred HHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcC---------CCCch
Q 048034 164 ELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSI---------NLNNH 234 (558)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l---------~~~~~ 234 (558)
.....+..++.++..|..+|.++....+|++|+++|+.|+...|+|...|..|+-+-.....+... ..|..
T Consensus 63 ~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 63 LVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 233334567889999999999999999999999999999999999999999986654433332221 12333
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhc---CCC-----hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTF---GFS-----NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDM 306 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 306 (558)
-..++-.+..+...|++..|+..++...+.. |.. .........++...|.+++|.+.+...-...-+.....
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~ 222 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHh
Confidence 3334445777777777777777777666533 221 22444556666677777777766655544444445555
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHH-HHHHHHHccCcCCHH-----HHHHhchh
Q 048034 307 DMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSV-VYFRRALKLNKNYLS-----AWTLMGHE 380 (558)
Q Consensus 307 ~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~p~~~~-----~~~~~~~~ 380 (558)
..-+.++..+++.++|..++...+..+|++...+..+-.++..-.+--+++ ..|...-+..|.... ....-+..
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 666777777788888888888888888887777766666664222223333 344433332222110 00000000
Q ss_pred cc-------------------------------------------------------------ccc--hHHHHHhHHHHH
Q 048034 381 YK-------------------------------------------------------------SID--YRAWYGLGQAYE 397 (558)
Q Consensus 381 ~~-------------------------------------------------------------~~~--~~~~~~lg~~~~ 397 (558)
+. |.. .+.++.+++-+.
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 00 222 345567899999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 477 (558)
..|+++.|..+.+.|+...|.-++.+...|.++.. .|.+++|...+..+.+++..+..+-...|....+.++.++|.+
T Consensus 383 ~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH--~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKH--AGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHh--cCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 99999999999999999999999999999999999 9999999999999999998887777789999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHh
Q 048034 478 YYKKDLERMEAEEREGPNMVEALIF--LATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 478 ~~~~al~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al 524 (558)
...+.-+.-......-.+.--.|+. -|..|.++|++..|++-|..+-
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 8877655210000000111223443 3888999999988887666554
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=3.6e-17 Score=152.05 Aligned_cols=297 Identities=16% Similarity=0.071 Sum_probs=251.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHH-HHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH-hchHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSW-LELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL-RMHNEALT 256 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~ 256 (558)
-...+..+.++|+++.|+++++-.-+.+....++- ..| .+..+++- .++..|.+
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl------------------------~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNL------------------------CALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhh------------------------HHHHHHhcccchhHHHH
Confidence 34567778889999999988876655544333322 111 02223332 36788899
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC
Q 048034 257 KYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYR 336 (558)
Q Consensus 257 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~ 336 (558)
+.+.++.++..++.++...|.+.+..|++++|.+.|++++..+....+++...+..+-.+|+.+++...+-++-.+--++
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998888999999999999999999999998888888889
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
.++++.++++|..+.+..+|++++-++..+-|+ ++.++..||.+|-+.|+-.+|.+++-...+..
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~---------------dp~ilskl~dlydqegdksqafq~~ydsyryf 622 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPN---------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYF 622 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC---------------CHHHHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 999999999999999999999999999999888 45578899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCCh
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 496 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 496 (558)
|-+......+|..|.. ..-+++|+.+|+++--+.|+.......++.|+.+.|+|++|...|+..-. .-|.+
T Consensus 623 p~nie~iewl~ayyid--tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-------kfped 693 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYID--TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-------KFPED 693 (840)
T ss_pred CcchHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-------hCccc
Confidence 9999999999999999 89999999999999999999888888999999999999999999999887 45888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 497 VEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 497 ~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
..++-.|.++.-.+|- .+|.++-.+.-
T Consensus 694 ldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 694 LDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred hHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 8888888888777764 45566555543
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.5e-17 Score=154.09 Aligned_cols=199 Identities=15% Similarity=0.107 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc
Q 048034 271 LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK 350 (558)
Q Consensus 271 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~ 350 (558)
.+..+|.++...|++++|+..++++++.+|.+...+..++.++...|+++++...+++++...|.++..+..+|.++...
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 33344444444444444444444444444444444444444444444444444444444444455567888899999999
Q ss_pred CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048034 351 GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCY 430 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 430 (558)
|++++|+..|++++...+. +.....+..+|.++...|++++|..+|.+++...|+++..+..+|.++
T Consensus 113 g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred ccHHHHHHHHHHHHhcccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 9999999999999975432 224457888999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 431 ETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 431 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.. .|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 180 ~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YL--RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99 99999999999999999888888999999999999999999998877665
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.8e-16 Score=141.67 Aligned_cols=262 Identities=17% Similarity=0.192 Sum_probs=213.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
-|..|.-+.-.++.++|++.|..+++.+|...++...| |..+...|..+.|+.+-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL-------------------------GnLfRsRGEvDRAIRiH 92 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL-------------------------GNLFRSRGEVDRAIRIH 92 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH-------------------------HHHHHhcchHHHHHHHH
Confidence 46678888889999999999999999999999998888 99999999999999998
Q ss_pred HHHHhhcCCC-----hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC
Q 048034 259 EYLQGTFGFS-----NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD 333 (558)
Q Consensus 259 ~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 333 (558)
+.+++. |+. ..+...+|.-|...|-++.|...|..+.+.......++..+..+|....++.+|...+++.....
T Consensus 93 Q~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 93 QTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 888763 332 34778899999999999999999999998777777888888888888888888888888888777
Q ss_pred CCC-----hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHH
Q 048034 334 KYR-----PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHY 408 (558)
Q Consensus 334 ~~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 408 (558)
+.. +..+|.++..+....++++|+..+.+|++.+|++. ++-..+|.++...|+|..|++.
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv---------------RAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV---------------RASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce---------------ehhhhhhHHHHhccchHHHHHH
Confidence 653 45678888888888888888888888888888844 4566788888888888888888
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 409 FRKSVFLQPND-SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 409 ~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
++.+++.+|.. +.+...+..||.. +|+.++.+..+.++.+..+. +.+...++.+-....-.+.|..++.+-+.
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~--lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQ--LGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 88888888775 4567778888888 88888888888888887665 34455566666666666777777777666
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.8e-17 Score=153.66 Aligned_cols=205 Identities=16% Similarity=0.106 Sum_probs=183.4
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
..+..++.+|.++...|++++|+..+.+++..+|.+..++..+ |.++...|++++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------a~~~~~~~~~~~ 83 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL-------------------------ALYYQQLGELEK 83 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH-------------------------HHHHHHcCCHHH
Confidence 4577899999999999999999999999999999998888776 999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC
Q 048034 254 ALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD 333 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 333 (558)
|+..++++++..|.+..++..+|.++...|++++|+..|++++...+.
T Consensus 84 A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------------------------------- 131 (234)
T TIGR02521 84 AEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY-------------------------------- 131 (234)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc--------------------------------
Confidence 999999999999999999999999999999999999999999874321
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
+.....+..+|.++...|++++|..+|.+++..+|++. .++..+|.++...|++++|+.++++++
T Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~ 196 (234)
T TIGR02521 132 PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP---------------ESLLELAELYYLRGQYKDARAYLERYQ 196 (234)
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh---------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22356777899999999999999999999999988844 467889999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 452 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~ 452 (558)
...|.++..+..++.++.. .|+.++|..+.+.+....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 197 QTYNQTAESLWLGIRIARA--LGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HhCCCCHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhhC
Confidence 9988899999999999999 999999999888776554
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.81 E-value=4.8e-18 Score=167.82 Aligned_cols=260 Identities=18% Similarity=0.158 Sum_probs=210.5
Q ss_pred CCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhh--------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Q 048034 231 LNNHWMKDFFLASTYQELRMHNEALTKYEYLQGT--------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR 302 (558)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 302 (558)
.|..+....+++..|...|++++|+..++.+++. .|.-......+|.+|...+++.+|+.+|++++.+-...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3444555555799999999999999999999987 44334445568999999999999999999998753211
Q ss_pred cchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc
Q 048034 303 VEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK 382 (558)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 382 (558)
.. ..+|..+.++.+||..|...|++++|..++++|+++......+ ..
T Consensus 275 ~G--------------------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~---~~---- 321 (508)
T KOG1840|consen 275 FG--------------------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA---SH---- 321 (508)
T ss_pred cC--------------------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc---Ch----
Confidence 00 2233446788999999999999999999999999875431000 00
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ--------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-- 452 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-- 452 (558)
+.-...+..++.++...+++++|..++++++++. +.-+..+.++|.+|.. +|++++|.+.|++|+.+.
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~--~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK--MGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHh
Confidence 2234567789999999999999999999998752 2336788999999999 999999999999999763
Q ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 453 ------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 453 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
+.....++++|..|.+.+++.+|...|..+..++...+...|+....+.+||.+|..+|++++|.++..+++.
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2335688999999999999999999999999999666677788899999999999999999999999999984
No 65
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.81 E-value=1.3e-16 Score=171.33 Aligned_cols=296 Identities=15% Similarity=0.107 Sum_probs=242.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
|..++..+...|.+.|++++|..+|.+... .+..+|..+ ...|.+.|++++|
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~l-------------------------i~~y~~~g~~~eA 309 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSM-------------------------LAGYALHGYSEEA 309 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHH-------------------------HHHHHhCCCHHHH
Confidence 445556666677777777777777766533 244445444 8889999999999
Q ss_pred HHHHHHHHhh-cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhc
Q 048034 255 LTKYEYLQGT-FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRND-PYRVEDMDMYSNVLYAKECFSALSYLAHRVFTT 332 (558)
Q Consensus 255 ~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~ 332 (558)
+..|+++.+. ...+...+..+..++...|++++|.+++..+++.. +.+......+...|...|+.++|..++.+...
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~- 388 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR- 388 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-
Confidence 9999999763 23356788889999999999999999999999876 56777888899999999999999999998754
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
.+..+|..+...|...|+.++|+..|++..+.... .+..++..+...+...|..++|..+|+..
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~--------------Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA--------------PNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------CCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 35678999999999999999999999998765422 12346788888999999999999999999
Q ss_pred HhcCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 413 VFLQP--NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 413 ~~~~p--~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
.+..+ .+...|..+..+|.+ .|++++|.+.++++- ..| +..+|..+...+...|+.+.|...+++.++
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r--~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~------ 522 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGR--EGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYG------ 522 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHh--cCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhC------
Confidence 76432 244678899999999 999999999998752 333 466799999999999999999999999887
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 491 REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 491 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
..|.+...|..++.+|.+.|++++|.+.++.+.+.
T Consensus 523 -~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 523 -MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 67887888999999999999999999999987653
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=1.8e-16 Score=157.13 Aligned_cols=351 Identities=15% Similarity=0.052 Sum_probs=254.1
Q ss_pred hHH-HHHHHhhcccchHHHHHHHhhccC---ChHHHHHHHHHHHHHchhhHHHHHHhh-CCCCCC--c-----------h
Q 048034 92 DFY-LLAKSYFDCREYRRAAHVLRDQTG---KKSVFLRCYALYLAGEKRKEEEMIELE-GPLGKS--D-----------A 153 (558)
Q Consensus 92 ~~~-~la~~~~~~~~~~rA~~~l~~~~~---~~~~~l~~y~~yl~~~~~~~e~~~~~~-~~~~~~--~-----------~ 153 (558)
.+| .|.-++-.+|+|..+++.|++... ....-++.++..+++-...... +.+. ...... + .
T Consensus 324 ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~A-v~ll~~~~~~~~~ps~~s~~Lmaskl 402 (799)
T KOG4162|consen 324 AIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKA-VNLLRESLKKSEQPSDISVLLMASKL 402 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHH-HHHHHhhcccccCCCcchHHHHHHHH
Confidence 344 668888899999999999998742 1122223333434332221111 1111 111111 1 1
Q ss_pred hch---hHHHHHHHHHHhhh-----CCCCchHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhhCCCCHHHHH
Q 048034 154 VNR---ELISLERELSTLRK-----NGTMDPFILYLYGLVLKDK-----------GSENLARTVLVESVNSYPWNWNSWL 214 (558)
Q Consensus 154 ~~~---~l~~~~~~l~~~~~-----~~~~~~~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~ 214 (558)
+.. ..+.......+.++ .+...|..+..+|.+|..+ -...++++.++++++.+|.|+.+.+
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if 482 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF 482 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 111 12222222222222 2344678899999998543 2357899999999999999998887
Q ss_pred HHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhh-cCCChHHHHHHHHHHHHcccHHHHHHHHH
Q 048034 215 ELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGT-FGFSNYLQAQIAKAQYSLREFEQVEVVFE 293 (558)
Q Consensus 215 ~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 293 (558)
.+ +.-|...++.+.|++...++++. ..+++..|..+|.++...+++.+|+.+.+
T Consensus 483 ~l-------------------------alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 483 YL-------------------------ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HH-------------------------HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 76 88888889999999999999988 55677888889999999999999999999
Q ss_pred HHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC----------------------------------------
Q 048034 294 ELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD---------------------------------------- 333 (558)
Q Consensus 294 ~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~---------------------------------------- 333 (558)
.++...|+|...++....+-...++.+++...+...+..-
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 9988888865554444444333444443333322211110
Q ss_pred ----------------------CCC-------hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcccc
Q 048034 334 ----------------------KYR-------PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSI 384 (558)
Q Consensus 334 ----------------------~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 384 (558)
|.. -..|...+..+...+..++|..++.++-+++|-
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l--------------- 682 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL--------------- 682 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---------------
Confidence 111 135667788888888888888888888888876
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCcHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK--CYRRAANCNDSEAIALNQL 462 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~~~l 462 (558)
.+..|+..|..+...|++.+|...|..|+.++|+++.+...+|.++.. .|+..-|.. .+..+++++|.++.+|+.+
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle--~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE--LGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 445789999999999999999999999999999999999999999999 998888888 9999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 048034 463 AKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 463 a~~~~~~g~~~~A~~~~~~al~~ 485 (558)
|.++.++|+.++|.++|..++++
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHhh
Confidence 99999999999999999999984
No 67
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=5.6e-15 Score=160.86 Aligned_cols=322 Identities=9% Similarity=-0.033 Sum_probs=262.5
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCC-CHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPW-NWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
.+...|..+-..+.+.|++++|..+|.++.+.... +...|..| ...|.+.|+.+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL-------------------------I~~y~k~G~vd 489 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL-------------------------ISTCAKSGKVD 489 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------HHHHHhCcCHH
Confidence 46677777777888999999999999998875432 34444444 77889999999
Q ss_pred HHHHHHHHHHhhcC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CCcchHHHHHHHHHhcCCHhHHHHHHHHHh
Q 048034 253 EALTKYEYLQGTFG-FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDP-YRVEDMDMYSNVLYAKECFSALSYLAHRVF 330 (558)
Q Consensus 253 ~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~ 330 (558)
+|.+.|+++.+... .+...+..+...|.+.|++++|+.+|+++....- .+...+..+...+...|+.++|..++.++.
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999987532 3678889999999999999999999999976532 235567778888999999999999999987
Q ss_pred hcC---CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHH
Q 048034 331 TTD---KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALH 407 (558)
Q Consensus 331 ~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 407 (558)
... ..+..++..+...|.+.|++++|.+.|+++.+.+.. .+...|..+...|.+.|++++|+.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~--------------p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK--------------GTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--------------CChHHHHHHHHHHHhcCCHHHHHH
Confidence 531 224678899999999999999999999999887532 134578899999999999999999
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 408 YFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 408 ~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.|.++... .| +...|..+...|.+ .|++++|...++++.+.. +.+...+..+...|.+.|++++|..+|+++.+
T Consensus 636 lf~eM~~~Gv~P-D~~TynsLI~a~~k--~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 636 IYDDMKKKGVKP-DEVFFSALVDVAGH--AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999875 44 46789999999999 999999999999999865 45677999999999999999999999998875
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHH
Q 048034 485 RMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT-GPEKETAKSMLRGMRM 543 (558)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ll~~~~~ 543 (558)
. +..| +...|..+...|.+.|++++|.++|+++.... .|+......++..+.+
T Consensus 713 ~-----g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 713 I-----KLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred c-----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 2 1234 46789999999999999999999999887532 3566666666655443
No 68
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.80 E-value=2.8e-15 Score=161.21 Aligned_cols=313 Identities=12% Similarity=0.073 Sum_probs=195.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
.++..+..+...|.+.|++++|..+|.+.... +...|..+ ...|.+.|++++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---~~~t~n~l-------------------------i~~~~~~g~~~~ 207 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPER---NLASWGTI-------------------------IGGLVDAGNYRE 207 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC---CeeeHHHH-------------------------HHHHHHCcCHHH
Confidence 46777778888888888888888888887653 23334443 445555666666
Q ss_pred HHHHHHHHHhhcC------------------------------------CChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 048034 254 ALTKYEYLQGTFG------------------------------------FSNYLQAQIAKAQYSLREFEQVEVVFEELLR 297 (558)
Q Consensus 254 A~~~~~~~~~~~p------------------------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 297 (558)
|+..|+++.+..+ .+..++..+...|.+.|++++|...|++..
T Consensus 208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 286 (697)
T PLN03081 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP- 286 (697)
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 6666666554221 223334444555555555555555555442
Q ss_pred cCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC-CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHH
Q 048034 298 NDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTL 376 (558)
Q Consensus 298 ~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 376 (558)
+.+...+..+...+...|+.++|..++.+..... ..+..++..+...+...|++++|.+.+..+++...
T Consensus 287 --~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-------- 356 (697)
T PLN03081 287 --EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-------- 356 (697)
T ss_pred --CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC--------
Confidence 2344445555555555555555555555554322 22344555555555555666665555555554431
Q ss_pred hchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCc
Q 048034 377 MGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSE 455 (558)
Q Consensus 377 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~~ 455 (558)
+.+..++..+...|.+.|++++|...|++..+ .+...|+.+...|.+ .|+.++|++.|+++.... ..+
T Consensus 357 ------~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~--~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 357 ------PLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGN--HGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred ------CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCC
Confidence 22445677788888888888888888887653 356678888888888 888888888888877643 223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAK 535 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 535 (558)
...+..+...+.+.|..++|..+|+.+.+.. +..| +...|..+...+.+.|++++|.+.+++.- . .++...+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~-~p~~~~~~ 498 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RIKP-RAMHYACMIELLGREGLLDEAYAMIRRAP-F-KPTVNMWA 498 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCC-C-CCCHHHHH
Confidence 5567777777888888888888888776521 1223 34566667777777888888877777643 2 24555666
Q ss_pred HHHHHHHH
Q 048034 536 SMLRGMRM 543 (558)
Q Consensus 536 ~ll~~~~~ 543 (558)
.++..+..
T Consensus 499 ~Ll~a~~~ 506 (697)
T PLN03081 499 ALLTACRI 506 (697)
T ss_pred HHHHHHHH
Confidence 66665543
No 69
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=5.8e-17 Score=138.58 Aligned_cols=208 Identities=15% Similarity=0.056 Sum_probs=175.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
..+...+|.-|+..|++..|...++++|+.+|.+..+|..+ +.+|...|+.+.|-
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~-------------------------A~~Yq~~Ge~~~A~ 89 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVR-------------------------AHYYQKLGENDLAD 89 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH-------------------------HHHHHHcCChhhHH
Confidence 34677889999999999999999999999999999999887 99999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCC
Q 048034 256 TKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKY 335 (558)
Q Consensus 256 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~ 335 (558)
+.|++++++.|++.+++.+.|..++.+|++++|...|++++. +|.. +.
T Consensus 90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y-------------------------------~~ 137 (250)
T COG3063 90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAY-------------------------------GE 137 (250)
T ss_pred HHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCC-------------------------------CC
Confidence 999999999999999999999999999999999999999987 4543 33
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
.+.++-++|.|..+.|+++.|..+|+++++++|+++. ....++...+..|++..|..++++....
T Consensus 138 ~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~---------------~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 138 PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP---------------ALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh---------------HHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 4677888888888889999999999999988888665 4667788888888888888888888877
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 048034 416 QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 416 ~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 457 (558)
.+.....+.....+-.. .|+-+.|-++=.+.....|....
T Consensus 203 ~~~~A~sL~L~iriak~--~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 203 GGAQAESLLLGIRIAKR--LGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred ccccHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCcHH
Confidence 77777777777777777 88888887777777777777654
No 70
>PLN03077 Protein ECB2; Provisional
Probab=99.79 E-value=1.7e-15 Score=166.75 Aligned_cols=399 Identities=15% Similarity=0.120 Sum_probs=272.8
Q ss_pred HHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHH--chhhHHHHHHhhCCC---CCCch------------hchh
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAG--EKRKEEEMIELEGPL---GKSDA------------VNRE 157 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~--~~~~~e~~~~~~~~~---~~~~~------------~~~~ 157 (558)
.|-..|.+.|+++.|..+|++...+... .|...+.+ ..+..++..++...+ +-.+. ....
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~---s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCI---SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcc---hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 5668889999999999999987543221 12222222 222233333222111 10000 0111
Q ss_pred HHHHHHHHHHhhh-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHH
Q 048034 158 LISLERELSTLRK-NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWM 236 (558)
Q Consensus 158 l~~~~~~l~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 236 (558)
+....+-.....+ .-..|...+..+...|.+.|++++|..+|.++...+ ...|..+
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d---~~s~n~l-------------------- 360 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD---AVSWTAM-------------------- 360 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---eeeHHHH--------------------
Confidence 1122222222222 224577788888888889999999999988875433 3344444
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhh--cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CCcchHHHHHHHH
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGT--FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDP-YRVEDMDMYSNVL 313 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~l 313 (558)
...|.+.|++++|+..|+++... .|+. ..+..+-..+...|+++.|.+++..+.+... .+......+...+
T Consensus 361 -----i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 361 -----ISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred -----HHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 67788889999999999887653 3443 3444455577888899999999988887643 2345566677788
Q ss_pred HhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHcc-CcCCHHHHHHhchhcc----------
Q 048034 314 YAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL-NKNYLSAWTLMGHEYK---------- 382 (558)
Q Consensus 314 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~---------- 382 (558)
...|+.++|..++++... .+..+|..+...|...|+.++|+..|++.... .|+.. .+..+-..+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~-t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV-TLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHh-HHHHHHHHHhhhchHHHhHH
Confidence 888999999888887643 34668888888888999999999999888753 33322 2221111110
Q ss_pred ----------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 048034 383 ----------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC- 451 (558)
Q Consensus 383 ----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~- 451 (558)
..+......+...|.+.|+.++|...|+.. +.+...|+.+...|.. .|+.++|+..|+++.+.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~--~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA--HGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH--cCCHHHHHHHHHHHHHcC
Confidence 223344566778999999999999999886 5678899999999999 99999999999998875
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 048034 452 -NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 452 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
.|+ ...+..+...+.+.|+.++|..+|+.+.+.. +..| +...|..+...+.+.|++++|.+.+++.- .. |+
T Consensus 585 ~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~-pd 656 (857)
T PLN03077 585 VNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY----SITP-NLKHYACVVDLLGRAGKLTEAYNFINKMP-IT-PD 656 (857)
T ss_pred CCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC-CC
Confidence 343 4566677778899999999999999988532 1334 35788889999999999999999998863 43 56
Q ss_pred HHHHHHHHHHHHH
Q 048034 531 KETAKSMLRGMRM 543 (558)
Q Consensus 531 ~~~~~~ll~~~~~ 543 (558)
...+..++..++.
T Consensus 657 ~~~~~aLl~ac~~ 669 (857)
T PLN03077 657 PAVWGALLNACRI 669 (857)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888887654
No 71
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=8.3e-17 Score=152.71 Aligned_cols=232 Identities=15% Similarity=0.030 Sum_probs=164.4
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR-EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
+...++.++|+..+.+++..+|.+..+|...+.++...| ++++++..++++++.+|.+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn--------------------- 105 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN--------------------- 105 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------------------
Confidence 445556667777777777777777777766666666666 4566666666666666655
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCCh--HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQH--EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
..+|...+.++...|+. ++++.++.++++.+|++. .+|...|.++...|+
T Consensus 106 -------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy---------------~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 106 -------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY---------------HAWSHRQWVLRTLGG 157 (320)
T ss_pred -------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHhhh
Confidence 56666677666666653 667888888888887744 467777777778888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cC
Q 048034 402 PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL---HML----EEAIKCYRRAANCNDSEAIALNQLAKLHHA----LG 470 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~---~~~----~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g 470 (558)
+++|+.++.++++.+|.+..+|+.++.+... . |.+ ++++.+..+++..+|++..+|..++.++.. ++
T Consensus 158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~--~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITR--SPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHHh--ccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 8888888888888888888888888887766 5 222 467777778888888888888888888877 34
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHhccCCCcHH
Q 048034 471 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN------------------RFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~~~~~~ 532 (558)
+..+|+..+.+++. ..+.++.++..|+.+|.... ..++|..++...-+.||-...
T Consensus 236 ~~~~~~~~~~~~~~-------~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~ 308 (320)
T PLN02789 236 SDPEVSSVCLEVLS-------KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRN 308 (320)
T ss_pred cchhHHHHHHHhhc-------ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHH
Confidence 55667777777666 56777788888888886532 236677777777666654444
Q ss_pred HH
Q 048034 533 TA 534 (558)
Q Consensus 533 ~~ 534 (558)
-+
T Consensus 309 yw 310 (320)
T PLN02789 309 YW 310 (320)
T ss_pred HH
Confidence 44
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.78 E-value=2.8e-17 Score=166.20 Aligned_cols=355 Identities=13% Similarity=0.077 Sum_probs=288.1
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH---hhcC-----C
Q 048034 159 ISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI---LNSI-----N 230 (558)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~l-----~ 230 (558)
......+-+.+..++.-+-++-.+|.+|....+...|.++|.+|.+++|.+.+++...+..+.+... ...+ .
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3444444445556777777899999999999999999999999999999999999998887654332 1111 0
Q ss_pred ------CCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcc
Q 048034 231 ------LNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVE 304 (558)
Q Consensus 231 ------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 304 (558)
-..+|.. +|..|.+.++...|+..|+.++..+|.+...|..+|.+|...|.+..|++.|.++..++|.+.-
T Consensus 555 ka~a~~~k~nW~~---rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 555 KAPAFACKENWVQ---RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hchHHHHHhhhhh---ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 1234443 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc-------CChHHHHHHHHHHH-------ccC-cC
Q 048034 305 DMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK-------GQHEKSVVYFRRAL-------KLN-KN 369 (558)
Q Consensus 305 ~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~-------~~~~~A~~~~~~al-------~~~-p~ 369 (558)
+.+..+.+....|++.++...+..++............+|.++.+. |=..+|..++++++ ... -+
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998887776666677777776643 33344444444443 333 34
Q ss_pred CHHHHHHhchhcc-----------------------------------------------ccchHHHHHhHHHHHH----
Q 048034 370 YLSAWTLMGHEYK-----------------------------------------------SIDYRAWYGLGQAYEM---- 398 (558)
Q Consensus 370 ~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~lg~~~~~---- 398 (558)
+...|...|.... -.++..|+++|..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 4445555553322 3346689999988876
Q ss_pred ----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 399 ----MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 399 ----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
+.+-..|+.++.+++++..++...|+.||.+ .. .|.+.-|..||-+.+...|.....|.++|.++.+..+++-
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg--~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG--IGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc--cchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 2233579999999999999999999999999 44 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 475 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 475 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
|...|.++.. .+|.+...|...+.+....|+.-++...|....++
T Consensus 869 A~~af~~~qS-------LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el 913 (1238)
T KOG1127|consen 869 AEPAFSSVQS-------LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDEL 913 (1238)
T ss_pred hhHHHHhhhh-------cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHh
Confidence 9999999988 78999999999999999999999999998874443
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=5.6e-16 Score=138.60 Aligned_cols=273 Identities=14% Similarity=0.112 Sum_probs=237.0
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC-----cchHHHHHHH
Q 048034 238 DFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR-----VEDMDMYSNV 312 (558)
Q Consensus 238 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~~~~ 312 (558)
.|+.|.-++-..+.++|++.|..+++.+|...++...+|..+...|..+.|+.+-+.+++ .|+- .-++..++.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 456688888899999999999999999999999999999999999999999999888776 4443 3455667777
Q ss_pred HHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHh
Q 048034 313 LYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 313 l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
+...|-++.|+.++...++.......+.-.+..+|....++++|++.-++..++.+..... .-+..++.+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----------eIAqfyCEL 186 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----------EIAQFYCEL 186 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----------HHHHHHHHH
Confidence 8888999999999999999888999999999999999999999999999999998875432 123568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCC
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-AIALNQLAKLHHALGR 471 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~ 471 (558)
++.+....+.+.|...+.+|++.+|++.++-..+|.++.. .|+|+.|++.++.+++.+|.. +.+...|..+|.++|+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~--~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA--KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh--ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999 999999999999999999986 4588899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
.++.+..+.++.+. .+ .+.+-..+++.-....=.+.|..++.+-+...|.-.
T Consensus 265 ~~~~~~fL~~~~~~-------~~-g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 265 PAEGLNFLRRAMET-------NT-GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred HHHHHHHHHHHHHc-------cC-CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 99999999999983 23 345666677777777777888888888777766443
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.6e-17 Score=150.71 Aligned_cols=264 Identities=15% Similarity=0.078 Sum_probs=228.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 320 (558)
.|..+....+|.+|+..+..+++.+|++...|...+.++...|+|++|.-..++.++++|.........+.+...+++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 37788899999999999999999999999999999999999999999999999999999998887777777777776666
Q ss_pred HHHHHHHHH---------------hhcC---CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc
Q 048034 321 ALSYLAHRV---------------FTTD---KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK 382 (558)
Q Consensus 321 ~a~~l~~~~---------------~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 382 (558)
++...++.. +..+ |....+-...+.++...|++++|+..--..+++++.+.+
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~---------- 204 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE---------- 204 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH----------
Confidence 665444321 1111 222344556788999999999999999999999999665
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS------------RLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~------------~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
+.+..|.++...++.+.|+..|++++.++|+.. ..|..-|.-.++ .|++.+|.++|..+|.
T Consensus 205 -----al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk--~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 205 -----ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK--NGNYRKAYECYTEALN 277 (486)
T ss_pred -----HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh--ccchhHHHHHHHHhhc
Confidence 566777888899999999999999999999864 356777888889 9999999999999999
Q ss_pred cCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 451 CNDSEA----IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 451 ~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
++|++. ..+.++|.+..++|+..+|+...+.+++ .++....++...|.++..++++++|.+.|+++++.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~-------iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK-------IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999864 4789999999999999999999999999 78999999999999999999999999999999987
Q ss_pred CC
Q 048034 527 TG 528 (558)
Q Consensus 527 ~~ 528 (558)
..
T Consensus 351 ~~ 352 (486)
T KOG0550|consen 351 EK 352 (486)
T ss_pred cc
Confidence 53
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.77 E-value=1.4e-15 Score=150.75 Aligned_cols=319 Identities=11% Similarity=-0.020 Sum_probs=235.5
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
+|+.+..+..+|.++...|+.+.|...+.++....|.+.+.... .+..+.++...|++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------------------~~~~a~~~~~~g~~ 59 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER----------------------AHVEALSAWIAGDL 59 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH----------------------HHHHHHHHHHcCCH
Confidence 58889999999999999999999999999999988866443322 23458889999999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHH----HcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELL----RNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l----~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
++|...++++++.+|.+..++.. +..+...|++..+.....+++ ..+|........++.++...|++.++...++
T Consensus 60 ~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 60 PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999877665 556655555444444444444 4555555666777889999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALH 407 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 407 (558)
+++..+|.++..+..+|.++...|++++|+.++++++...|..... ....|..+|.++...|++++|+.
T Consensus 139 ~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~-----------~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 139 RALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML-----------RGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch-----------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999988753221 12457789999999999999999
Q ss_pred HHHHHHhcCCC--CHHHHHHH---HHHHHHHhcCCHHHHHHH---HHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHH
Q 048034 408 YFRKSVFLQPN--DSRLWIAM---AQCYETEQLHMLEEAIKC---YRRAANCND--SEAIALNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 408 ~~~~a~~~~p~--~~~~~~~l---a~~~~~~~~~~~~~A~~~---~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~ 477 (558)
.|++++...|. ........ ...+.. .|....+... ........+ .........+.++...|+.++|..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLEL--AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHh--cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99999877662 22211122 222222 3432222222 111111111 122333468888899999999999
Q ss_pred HHHHHHHHHHhh--hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 478 YYKKDLERMEAE--EREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 478 ~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.++......... .........+....|.++...|++++|.+.+..++.+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998887644320 1112234566777899999999999999999999875
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.76 E-value=2.5e-15 Score=146.31 Aligned_cols=327 Identities=13% Similarity=0.086 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHH
Q 048034 157 ELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWM 236 (558)
Q Consensus 157 ~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 236 (558)
+...-++.++.+++..|..+..+-++|..+...|+.++|......+++.++.+.-+|..+
T Consensus 22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~-------------------- 81 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL-------------------- 81 (700)
T ss_pred HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH--------------------
Confidence 344445555666667888899999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK 316 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 316 (558)
|.++....+|++|+.+|..++.+.|++..++.-++....++++++.....-.+.++..|.+...+..++......
T Consensus 82 -----gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 82 -----GLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred -----HHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHhhcCC---C-----ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHH
Q 048034 317 ECFSALSYLAHRVFTTDK---Y-----RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRA 388 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~---~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 388 (558)
|++..+..+++...+... . ..+.......+....|.+++|++.+..- .+...+ ....
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~---e~~i~D------------kla~ 221 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN---EKQIVD------------KLAF 221 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh---hhHHHH------------HHHH
Confidence 999999988888776552 2 1233445556666777777777665432 222111 1223
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcC---------------
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI-KCYRRAANCN--------------- 452 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~-~~~~~al~~~--------------- 452 (558)
.-..|.++.+++++++|...|...+..+|++...+..+-.++.. -.+--+++ ..|...-+..
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk--~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGK--IKDMLEALKALYAILSEKYPRHECPRRLPLSVLN 299 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHhhcCcccccchhccHHHhC
Confidence 45678899999999999999999999999998776665555531 11111111 1111110000
Q ss_pred ------------------------------------------------------------------CCcH--HHHHHHHH
Q 048034 453 ------------------------------------------------------------------DSEA--IALNQLAK 464 (558)
Q Consensus 453 ------------------------------------------------------------------~~~~--~~~~~la~ 464 (558)
|..+ ..++.++.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 1111 24567888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 532 (558)
-+...|+++.|..+++.++. ..|..++.+...|+++...|++++|..++..+-++|-+|.-
T Consensus 380 h~D~~g~~~~A~~yId~AId-------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAID-------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred HHHHcccHHHHHHHHHHHhc-------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 89999999999999999998 77999999999999999999999999999999999866553
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=5.7e-16 Score=153.26 Aligned_cols=265 Identities=17% Similarity=0.074 Sum_probs=200.9
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhc
Q 048034 171 NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRM 250 (558)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (558)
..|.-......+|..|..+|++++|+..|+.+++.--..+. ...+.--...-..|.+|..+++
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-----------------~~hl~va~~l~~~a~~y~~~~k 256 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-----------------LKHLVVASMLNILALVYRSLGK 256 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-----------------ccCHHHHHHHHHHHHHHHHhcc
Confidence 34545556777999999999999999999999986111100 0000000111125999999999
Q ss_pred hHHHHHHHHHHHhh--------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHH
Q 048034 251 HNEALTKYEYLQGT--------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSAL 322 (558)
Q Consensus 251 ~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a 322 (558)
+.+|+.+|++++.+ +|.-..++..+|.+|+..|+|++|..++++++++.....
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------------------- 317 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------------------- 317 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh-------------------
Confidence 99999999999984 333455788899999999999999999999988643310
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH-HHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 323 SYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL-SAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
....|.-+..+..++.++...+++++|+.++++++++.-+.. ... +.-+..+.+||.+|..+|+
T Consensus 318 -------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~--------~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 318 -------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN--------VNLAKIYANLAELYLKMGK 382 (508)
T ss_pred -------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc--------hHHHHHHHHHHHHHHHhcc
Confidence 012223345677899999999999999999999988643111 000 1124578899999999999
Q ss_pred HHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHH
Q 048034 402 PFYALHYFRKSVFLQ--------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLH 466 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~ 466 (558)
+++|.++|++|+.+. +.....+..+|..|.. .+++.+|...|.++..+ .|+....+.+||.+|
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~--~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE--LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 999999999999864 2335678899999998 99999999999988765 244455899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHh
Q 048034 467 HALGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 467 ~~~g~~~~A~~~~~~al~~~~~ 488 (558)
..+|++++|+++.++++..-++
T Consensus 461 ~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974433
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.74 E-value=7.6e-16 Score=155.99 Aligned_cols=347 Identities=15% Similarity=0.056 Sum_probs=226.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH-------h--hcCCCCchHHHHHHHHHHHHH
Q 048034 177 FILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI-------L--NSINLNNHWMKDFFLASTYQE 247 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------~--~~l~~~~~~~~~~~~a~~~~~ 247 (558)
+.|..+|..|...++...|+..|+.+++.+|.+..+|..|+..+...+. + .++-.|.+|...|+.+.....
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 4566699999999999999999999999999999999999665533221 1 111245666666666666667
Q ss_pred HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHcC--------CCCcchHHHHHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL-------REFEQVEVVFEELLRND--------PYRVEDMDMYSNV 312 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-------~~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~ 312 (558)
.|.|.+|+..+...+............+|.++.+. |-+.+|...+++.++.. -.+.-.+..++..
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 77777777766666665554445555556555442 44555666666655421 0111111111111
Q ss_pred -------------------HHh----cCCH--hHHHHHHHHHhhc---CCCChhHHHHHHHHHhh--------cCChHHH
Q 048034 313 -------------------LYA----KECF--SALSYLAHRVFTT---DKYRPESCCIIGNYYSL--------KGQHEKS 356 (558)
Q Consensus 313 -------------------l~~----~~~~--~~a~~l~~~~~~~---~~~~~~~~~~lg~~~~~--------~~~~~~A 356 (558)
+.. ++.. .+...+.-+..-. --..+..|+++|..|++ ..+-..|
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 111 0000 0111111111000 01236789999988876 2334589
Q ss_pred HHHHHHHHccCcCCHHHHHHhchhcc------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 357 VVYFRRALKLNKNYLSAWTLMGHEYK------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~~~~~~~------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
+.++++++++..++...|..+|..-. |.....|.++|.++....+++.|...|.++..++|.
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 99999999999999888888875432 777778888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHhhh
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-----AIALNQLAKLHHALGRDEEAAFYYKKDLER---MEAEE 490 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~ 490 (558)
+...|...+.+... .|+.-++...|.....+.... ...|..--.+....|++++-+...+++-.. ++.--
T Consensus 883 nl~~WlG~Ali~ea--vG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEA--VGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred hhHHHHHHHHhHHH--HHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 88888888888888 888888888887744433221 224455555666777777666555443221 11112
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 491 REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 491 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
...|+...++...|.....++.+..|.+.+.+++.
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999999988764
No 79
>PLN03077 Protein ECB2; Provisional
Probab=99.74 E-value=1.3e-14 Score=159.96 Aligned_cols=292 Identities=12% Similarity=0.032 Sum_probs=228.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
+..++..+...|.+.|++++|.++|.+..+.+ ...|..+ ...|...|+.++|
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d---~vs~~~m-------------------------i~~~~~~g~~~eA 474 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKD---VISWTSI-------------------------IAGLRLNNRCFEA 474 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---eeeHHHH-------------------------HHHHHHCCCHHHH
Confidence 44555566666666666666666666654322 2233333 6677888899999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDP-YRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD 333 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 333 (558)
+..|+++....+.+...+..+-.++...|+.+.+.+++..+++..- .+......+...+...|+.++|...+...
T Consensus 475 ~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---- 550 (857)
T PLN03077 475 LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----
Confidence 9999998875555666666777778888999999998888887542 23344556777888899999999988875
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHcc--CcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL--NKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
+.+..+|..+...|...|+.++|+..|++..+. .|+ ..++..+-..+...|+.++|..+|+.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----------------~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD----------------EVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------cccHHHHHHHHhhcChHHHHHHHHHH
Confidence 567889999999999999999999999998874 344 23466677789999999999999999
Q ss_pred HHhcCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 412 SVFLQP--NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 412 a~~~~p--~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
..+..+ .+...|..+..++.+ .|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|....++.++
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r--~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~----- 685 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGR--AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFE----- 685 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHh--CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----
Confidence 884332 245788999999999 99999999999986 34454 67788888888889999999999988888
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 490 EREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 490 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
..|++...+..++.+|...|++++|.+..+...+
T Consensus 686 --l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 686 --LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred --hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 6788999999999999999999999999988754
No 80
>PLN02789 farnesyltranstransferase
Probab=99.73 E-value=3.6e-15 Score=141.61 Aligned_cols=208 Identities=12% Similarity=-0.011 Sum_probs=140.2
Q ss_pred HHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHh-chHHHHHHHHHHHh
Q 048034 185 VLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELR-MHNEALTKYEYLQG 263 (558)
Q Consensus 185 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~ 263 (558)
++...++.++|+..+.+++..+|.+..+|... +.++..+| .+++++..+++++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R-------------------------~~iL~~L~~~l~eeL~~~~~~i~ 100 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFR-------------------------RLCLEALDADLEEELDFAEDVAE 100 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHH-------------------------HHHHHHcchhHHHHHHHHHHHHH
Confidence 35678899999999999999999999999776 77777777 67999999999999
Q ss_pred hcCCChHHHHHHHHHHHHcccH--HHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHH
Q 048034 264 TFGFSNYLQAQIAKAQYSLREF--EQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCC 341 (558)
Q Consensus 264 ~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 341 (558)
.+|++..+|..++.++...|+. ++++.+++++++.+|.+..++...+.++...+.++++...+.++++.+|.+..+|+
T Consensus 101 ~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 101 DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence 9999999999999999888874 67788888888888887666555555555555555555555555555555555555
Q ss_pred HHHHHHhhc---CCh----HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH----cCCHHHHHHHHH
Q 048034 342 IIGNYYSLK---GQH----EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM----MHMPFYALHYFR 410 (558)
Q Consensus 342 ~lg~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~ 410 (558)
..|.+.... |.+ ++++.+..+++.++|++.. +|+.++.++.. +++..+|+..+.
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S---------------aW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES---------------PWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC---------------HHHHHHHHHhcCCcccccchhHHHHHH
Confidence 555554433 112 3455555555555555333 33344444433 233344555555
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH
Q 048034 411 KSVFLQPNDSRLWIAMAQCYET 432 (558)
Q Consensus 411 ~a~~~~p~~~~~~~~la~~~~~ 432 (558)
+++...|.++.++..++.+|..
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHh
Confidence 5555555555555555555543
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.6e-13 Score=129.39 Aligned_cols=358 Identities=11% Similarity=0.035 Sum_probs=233.7
Q ss_pred hchhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCc
Q 048034 154 VNRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNN 233 (558)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~ 233 (558)
.+.+++++.+...+++...|.++.+++-.-.++.+.++|++|....+.-......+.-
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~---------------------- 81 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF---------------------- 81 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh----------------------
Confidence 4556666666677777777777777777777777888888777433322111111100
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------------
Q 048034 234 HWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPY------------ 301 (558)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------ 301 (558)
.|-.+.|.++++..++|+..++ ..++.+..++...|.++|++|+|++|...|+.+.+.+.+
T Consensus 82 ----~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a 154 (652)
T KOG2376|consen 82 ----FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLA 154 (652)
T ss_pred ----hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 0235777777777777777777 334455556667777777788888877777777543321
Q ss_pred -------------------CcchHHHHHHHHHhcCCHhHHHHHHHHHhhc--------CCC-------ChhHHHHHHHHH
Q 048034 302 -------------------RVEDMDMYSNVLYAKECFSALSYLAHRVFTT--------DKY-------RPESCCIIGNYY 347 (558)
Q Consensus 302 -------------------~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~--------~~~-------~~~~~~~lg~~~ 347 (558)
..+..+..+.++...|++.+|..++..+..+ +.. -..+...++.++
T Consensus 155 ~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 155 VAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred HHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 2233445566677778888888888877321 111 112455778888
Q ss_pred hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc---------------------------------------------
Q 048034 348 SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--------------------------------------------- 382 (558)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------------------------------------------- 382 (558)
...|+.++|...|...++.+|.+........+-+.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877665533222221111
Q ss_pred -------------------c----cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCCH
Q 048034 383 -------------------S----IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND-SRLWIAMAQCYETEQLHML 438 (558)
Q Consensus 383 -------------------~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~ 438 (558)
| ...-.-........+...+..|..++....+..|.+ ..+...++.+... +|++
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is--~gn~ 392 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS--QGNP 392 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh--cCCH
Confidence 1 111111122222233335777888888888888877 5677888888988 9999
Q ss_pred HHHHHHHHHH--------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc
Q 048034 439 EEAIKCYRRA--------ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH 510 (558)
Q Consensus 439 ~~A~~~~~~a--------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 510 (558)
+.|++.+... .+.. ..|.+...+-.++.+.++.+.|...+..++..........+.....+..++.+..+.
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999833 3322 234455556667788888888888888888866554433344444555578888888
Q ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 048034 511 NRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRM 543 (558)
Q Consensus 511 g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~ 543 (558)
|+-++|...+++.++.+|++.+....++.....
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 999999999999999999998887666554443
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.68 E-value=5.5e-15 Score=137.05 Aligned_cols=178 Identities=15% Similarity=0.029 Sum_probs=150.9
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
.++..+..++.+|..+...|++++|+..|++++..+|+++. ...+++.+|.++...|++++|+..|++
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34556788999999999999999999999999999987643 235788999999999999999999999
Q ss_pred HHhcCCCCHH---HHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCcHHHH-----------------HHHH
Q 048034 412 SVFLQPNDSR---LWIAMAQCYETEQL--------HMLEEAIKCYRRAANCNDSEAIAL-----------------NQLA 463 (558)
Q Consensus 412 a~~~~p~~~~---~~~~la~~~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~-----------------~~la 463 (558)
+++..|+++. +++.+|.++.. . |++++|+..|++++..+|++..++ ..+|
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~--~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYN--QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHH--hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776 68888999887 6 789999999999999998875432 4678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.++...|++.+|+..|+++++..+ ..|..+.+++.+|.++...|++++|..+++.+....
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYP----DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCC----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 899999999999999999998542 246678999999999999999999999988876643
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.9e-13 Score=123.90 Aligned_cols=281 Identities=16% Similarity=0.108 Sum_probs=201.8
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc--
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK-- 316 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~-- 316 (558)
+.++.++...-.|++|++.|.+++..+|+...+-..+|.||+++.-|+-+.+.+.--++..|+..-+....+..++++
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhc
Confidence 335777888888999999999999999988888899999999999999999999999999999999988888887766
Q ss_pred CCHh----------------HHHHHHHH----------HhhcCC----CChhHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 048034 317 ECFS----------------ALSYLAHR----------VFTTDK----YRPESCCIIGNYYSLKGQHEKSVVYFRRALKL 366 (558)
Q Consensus 317 ~~~~----------------~a~~l~~~----------~~~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 366 (558)
|+.. .+..+++. +++.-| .-|++..++..+|..+++..+|+...+ .+
T Consensus 235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl 311 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DL 311 (557)
T ss_pred cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hc
Confidence 2221 12222221 112222 356788899999999999999998765 46
Q ss_pred CcCCHHHHHHhchhcc----------------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 367 NKNYLSAWTLMGHEYK----------------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 367 ~p~~~~~~~~~~~~~~----------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
+|..+.-+...|..+. .+.......++..++...++++.+.++...-...-+
T Consensus 312 ~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N 391 (557)
T KOG3785|consen 312 DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN 391 (557)
T ss_pred CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8887777766665443 111122334555666666777777777777666677
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC-h
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-M 496 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~ 496 (558)
+....++++.++.. .|.+.+|.+.|-+.-... .+.......+|+||...|+.+-|-..+-+. ..|. .
T Consensus 392 dD~Fn~N~AQAk~a--tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---------~t~~e~ 460 (557)
T KOG3785|consen 392 DDDFNLNLAQAKLA--TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---------NTPSER 460 (557)
T ss_pred cchhhhHHHHHHHH--hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---------CCchhH
Confidence 77778888888888 888888888887765443 233345567888888888888887766442 2232 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 497 VEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 497 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
...+..+|....+.+++--|.+.|...-.++| .++.|
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 33444467888888888888888887777764 44433
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.67 E-value=1.4e-14 Score=134.26 Aligned_cols=192 Identities=16% Similarity=0.075 Sum_probs=151.9
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCH---HHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNW---NSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL 248 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (558)
.+..+..++.+|..+...|++++|+..|++++..+|.+. .++..+ |.++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l-------------------------a~~~~~~ 83 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDL-------------------------AYAYYKS 83 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHH-------------------------HHHHHhc
Confidence 456788999999999999999999999999999999875 344554 9999999
Q ss_pred hchHHHHHHHHHHHhhcCCChH---HHHHHHHHHHHc--------ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 249 RMHNEALTKYEYLQGTFGFSNY---LQAQIAKAQYSL--------REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
|++++|+..++++++.+|+++. +++.+|.+++.. |++++|+..|++++..+|.+......+..+....+
T Consensus 84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~ 163 (235)
T TIGR03302 84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN 163 (235)
T ss_pred CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 9999999999999999998776 688899999886 89999999999999999998665544333222111
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
. .......+|.+|...|++.+|+..|++++...|+.+. ...+++.+|.++.
T Consensus 164 ~-----------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------------~~~a~~~l~~~~~ 214 (235)
T TIGR03302 164 R-----------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA------------TEEALARLVEAYL 214 (235)
T ss_pred H-----------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc------------hHHHHHHHHHHHH
Confidence 0 0123356788888888888888888888888776422 3467888888888
Q ss_pred HcCCHHHHHHHHHHHHhcCC
Q 048034 398 MMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p 417 (558)
.+|++++|..+++......|
T Consensus 215 ~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 215 KLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 88888888888777665554
No 85
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=7.7e-12 Score=117.77 Aligned_cols=402 Identities=15% Similarity=0.092 Sum_probs=254.6
Q ss_pred HHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCC
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTM 174 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 174 (558)
-+|+=--.++++.||-.+++.+......+..++.+|.-.+.+ |+.+..+..-.+.....-|.
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk------------------nk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK------------------NKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh------------------hhhHhHHHHHHHHHHHhcch
Confidence 346666678999999999999876666666666666644322 22222333333444444466
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcC-----------CCCchHHHHHHHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSI-----------NLNNHWMKDFFLAS 243 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l-----------~~~~~~~~~~~~a~ 243 (558)
--.+||..-.+-...||...|.++|.+-+...|+ ..+|...+..-....+++.. +.-.+|+.. +.
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wiky---ar 215 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKY---AR 215 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHH---HH
Confidence 7778998888888999999999999999998884 46666655443222222211 122455555 77
Q ss_pred HHHHHhchHHHHHHHHHHHhhcCCChH---HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc--chHHHHHHHHHhcCC
Q 048034 244 TYQELRMHNEALTKYEYLQGTFGFSNY---LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV--EDMDMYSNVLYAKEC 318 (558)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~l~~~~~ 318 (558)
.-.+.|+..-|...|+++++...++.. +....|..-..+..++.|.-+|+-++..-|.+- +....+...--+-|+
T Consensus 216 FE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 216 FEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 788888889999999999886554332 344455555667788889999999988888762 222222222223355
Q ss_pred HhHHHH--------HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc--------
Q 048034 319 FSALSY--------LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-------- 382 (558)
Q Consensus 319 ~~~a~~--------l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------- 382 (558)
...... -.+..+..+|.+-++|+..-.+-...|+.+.-.+.|++|+.--|....-....-.+|.
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 443333 2455678888888999888888888889998899999988876653322111111111
Q ss_pred -------------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 048034 383 -------------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 437 (558)
Q Consensus 383 -------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 437 (558)
-..+.+|...++...++.+...|.+.+-.|+..+|.+.. .-....+-.+ +++
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElq--L~e 452 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQ--LRE 452 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHH--Hhh
Confidence 122345555566666666666666666666666665432 2222233334 677
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHH-HHHHHHHHHHcCCHHHH
Q 048034 438 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA-LIFLATHCRAHNRFEDA 516 (558)
Q Consensus 438 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A 516 (558)
++...+.|++-+...|.+..+|...|.+-..+|+.+.|...|+-++.. ..-+.+.. |-...+.-...|.+++|
T Consensus 453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q------p~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ------PALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC------cccccHHHHHHHhhhhhhhcchHHHH
Confidence 777777777777777777777777777777777777777777777762 11222222 22234445566777777
Q ss_pred HHHHHHHhccC
Q 048034 517 EVYCTRLLDYT 527 (558)
Q Consensus 517 ~~~~~~al~~~ 527 (558)
...|++.++..
T Consensus 527 R~LYerlL~rt 537 (677)
T KOG1915|consen 527 RALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHhc
Confidence 77777777654
No 86
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.1e-12 Score=123.29 Aligned_cols=344 Identities=13% Similarity=0.082 Sum_probs=208.4
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcC---------CCCchHHHHHHHHH
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSI---------NLNNHWMKDFFLAS 243 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l---------~~~~~~~~~~~~a~ 243 (558)
..+...|...|.--..++++..|..+|++||..+..+...|...+.+-.....++.. .+|..--..+-...
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 445566777777777788888888888888888877777777764432211111110 01111001111133
Q ss_pred HHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 244 TYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
.--.+|+..-|.++|++-++..|+ ..+|......-...+..+.|..+|++.+-..|. +..+..++..-...|...-+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHH
Confidence 344566666666666666666653 344545555555566666666677666665553 455555666666666666666
Q ss_pred HHHHHHhhcCCCCh---hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHH--HHHHhch---hcc-------------
Q 048034 324 YLAHRVFTTDKYRP---ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS--AWTLMGH---EYK------------- 382 (558)
Q Consensus 324 ~l~~~~~~~~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~---~~~------------- 382 (558)
..+.++++.-.++- ..+...|..-..++.++.|...|+-|+..-|.+.. .+..+.. -|.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 66666665544422 23344455555666777777777777776666521 1111100 000
Q ss_pred -----------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHHhcCCHHHHH
Q 048034 383 -----------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS---------RLWIAMAQCYETEQLHMLEEAI 442 (558)
Q Consensus 383 -----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~la~~~~~~~~~~~~~A~ 442 (558)
|.++++|+..-.+-...|+.+.-.+.|++|+...|.-. ..|.+.+..-. -...+.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE-le~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE-LEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHH
Confidence 88899999988888888999999999999988766521 12222221111 0144555555
Q ss_pred HHHHHHHhcCCCc-------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 443 KCYRRAANCNDSE-------------------------------------AIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 443 ~~~~~al~~~~~~-------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
..|+.++++-|.. ...+-....+-.++++++.+..+|++.++
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle- 465 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE- 465 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 5555555554432 12233334444556666677777777776
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 486 MEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 486 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.+|.+..+|...|.+-..+|+.+.|...|.-|++.
T Consensus 466 ------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 466 ------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred ------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999875
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.65 E-value=4.6e-13 Score=134.49 Aligned_cols=317 Identities=16% Similarity=0.055 Sum_probs=216.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
..++.....++...|++++|++.+.+....-++....... +|.++..+|++++|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~-------------------------rA~ll~kLg~~~eA~ 58 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEK-------------------------RAELLLKLGRKEEAE 58 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHH-------------------------HHHHHHHcCCHHHHH
Confidence 3456667788888999999999998876655554444433 388999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH-hHHHHHHHHH
Q 048034 256 TKYEYLQGTFGFSNYLQAQIAKAQYSL-----REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF-SALSYLAHRV 329 (558)
Q Consensus 256 ~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~-~~a~~l~~~~ 329 (558)
..|..++..+|++...+..+..+.... .+.+.-..+|++.....|........--..+ .-..+ ..+..++...
T Consensus 59 ~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~ 137 (517)
T PF12569_consen 59 KIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFL-EGDEFKERLDEYLRPQ 137 (517)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccC-CHHHHHHHHHHHHHHH
Confidence 999999999999888887777776333 2567777888888887776433322211111 10111 1222333332
Q ss_pred hhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc---cCcCCHHHHHHhchhcccc--chHHHHHhHHHHHHcCCHHH
Q 048034 330 FTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK---LNKNYLSAWTLMGHEYKSI--DYRAWYGLGQAYEMMHMPFY 404 (558)
Q Consensus 330 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~~~~~~ 404 (558)
+ ...-|.++..+-.+|....+..-....+..... ........- ...-.+. -.++++.+++.|...|++++
T Consensus 138 l--~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 138 L--RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred H--hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 2 334566666666666644443333333333221 111000000 0000001 12467899999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 405 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 405 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
|+.+.++|+...|..+..+...|.++.+ .|++.+|..+++.|..+++.+..+-...+..+.+.|+.++|...+.....
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh--~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKH--AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999998887765
Q ss_pred HHHhhhhcCCCh-HHHHH--HHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 485 RMEAEEREGPNM-VEALI--FLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 485 ~~~~~~~~~~~~-~~~~~--~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.-. ....+-.+ --.|+ .-|.+|.+.|++..|+..|..+.+.
T Consensus 291 ~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 291 EDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 110 00000001 12333 3599999999999999999988763
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=3.7e-13 Score=133.35 Aligned_cols=275 Identities=12% Similarity=-0.012 Sum_probs=200.0
Q ss_pred CchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHH
Q 048034 232 NNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFS---NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDM 308 (558)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 308 (558)
|+..+.++.+|.++...|+.+.+...+.++....|.+ .......+.++...|++++|...++++++.+|.+...+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3444555556999999999999999999888876644 4567778999999999999999999999999998866654
Q ss_pred HHHHHHhc----CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcccc
Q 048034 309 YSNVLYAK----ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSI 384 (558)
Q Consensus 309 ~~~~l~~~----~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 384 (558)
+..++.. +....+...+......+|........+|.++...|++++|+..++++++++|++.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~------------- 148 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA------------- 148 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-------------
Confidence 3344333 4455555555544466777778888999999999999999999999999999854
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIA 458 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~ 458 (558)
.++..+|.++...|++++|+.++++++...|.++ ..|..+|.++.. .|++++|+..|++++...|. ....
T Consensus 149 --~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~--~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 149 --WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE--RGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH--CCCHHHHHHHHHHHhccccCCChHHH
Confidence 4688899999999999999999999999887543 346689999999 99999999999999876652 2221
Q ss_pred HH---HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 459 LN---QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 459 ~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.. .+...+...|....+... +.+........ ..+.........+.++...|+.++|...+..+...
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11 223333444543333332 22222111110 11222233345788889999999999999887653
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=3.9e-14 Score=125.76 Aligned_cols=135 Identities=20% Similarity=0.301 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCC--HHHH
Q 048034 399 MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH-HALGR--DEEA 475 (558)
Q Consensus 399 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~--~~~A 475 (558)
.++.++++..+++++..+|+++..|..+|.+|.. .|++++|+.+|++++.++|+++.++..+|.++ ...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~--~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW--RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5677899999999999999999999999999999 99999999999999999999999999999975 67787 5999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRM 543 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~ 543 (558)
...++++++ .+|+++.+++.+|..+...|++++|+.+|+++++++|++......+ +.|..
T Consensus 130 ~~~l~~al~-------~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~~ 189 (198)
T PRK10370 130 REMIDKALA-------LDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV-ESINM 189 (198)
T ss_pred HHHHHHHHH-------hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH-HHHHH
Confidence 999999999 7899999999999999999999999999999999999888665444 55543
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.63 E-value=1.3e-14 Score=122.02 Aligned_cols=127 Identities=17% Similarity=0.055 Sum_probs=117.8
Q ss_pred HHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 048034 357 VVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 436 (558)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 436 (558)
..+|+++++++|+ .++.+|.++...|++++|+.+|++++..+|.+..+|..+|.++.. .|
T Consensus 13 ~~~~~~al~~~p~------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~g 72 (144)
T PRK15359 13 EDILKQLLSVDPE------------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM--LK 72 (144)
T ss_pred HHHHHHHHHcCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--Hh
Confidence 3578899999987 255789999999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc
Q 048034 437 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH 510 (558)
Q Consensus 437 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 510 (558)
++++|+.+|++++.++|+++.+++++|.++...|++++|+..|+++++ ..|+++..+..+|.+....
T Consensus 73 ~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~-------~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 73 EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK-------MSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 6799999998888776543
No 91
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.63 E-value=8.1e-15 Score=135.09 Aligned_cols=286 Identities=18% Similarity=0.155 Sum_probs=209.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
+-+-|.-+++.|++...+.+|+.+++....+...+..+ +.-+|.+|+.+++|++|+++-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAI---------------------YsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAI---------------------YSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHH---------------------HHHhcchhhhHhhHHHHHhhh
Confidence 44568888999999999999999999888776655443 122489999999999999854
Q ss_pred HHHHh------hcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhc
Q 048034 259 EYLQG------TFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTT 332 (558)
Q Consensus 259 ~~~~~------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~ 332 (558)
..=+. ..-..+..-..+|.++--.|.|++|+.+..+-+.+... +-.++
T Consensus 79 ~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are-----------------------LgDrv--- 132 (639)
T KOG1130|consen 79 THDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE-----------------------LGDRV--- 132 (639)
T ss_pred hhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHH-----------------------HhHHH---
Confidence 33221 11122334456888889999999999888777653211 00000
Q ss_pred CCCChhHHHHHHHHHhhcCCh--------------------HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHh
Q 048034 333 DKYRPESCCIIGNYYSLKGQH--------------------EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
....+++++|++|...|+. +.|+++|..-+++.....+. .. ..+++-+|
T Consensus 133 --~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr-~a--------qGRa~GnL 201 (639)
T KOG1130|consen 133 --LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR-LA--------QGRAYGNL 201 (639)
T ss_pred --hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH-Hh--------hcchhccc
Confidence 1145777888888877653 44555555555544332221 11 33678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--cHHHHH
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPN------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALN 460 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~----~~~--~~~~~~ 460 (558)
|..|+-+|+|+.|+..-+.-+.+... ..+++.++|.|+.- +|+++.|+++|++.+.+ ... .....+
T Consensus 202 GNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif--lg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 202 GNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF--LGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred CceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh--hcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 99999999999999988877665433 24688999999999 99999999999987654 333 345788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 461 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 461 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.+|..|.-..++++|+.++.+-+.+..+.. .......+++.||..+-..|..++|+.+..+.++
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999988655443 3455578899999999999999999999888765
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=1.2e-14 Score=122.25 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=111.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHH
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPF 403 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 403 (558)
.++++++..+|.+ +..+|..+...|++++|+.+|++++.++|.+. .+|+.+|.++...|+++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---------------RAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHH
Confidence 4555666666553 55689999999999999999999999999854 57889999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
+|+..|++++.++|+++.+++++|.++.. .|++++|+..|++++...|+++..+..++.+....
T Consensus 76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~--~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 76 TAINFYGHALMLDASHPEPVYQTGVCLKM--MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999998888776543
No 93
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2.9e-12 Score=116.28 Aligned_cols=310 Identities=13% Similarity=-0.018 Sum_probs=213.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
..+-..+|.|+++.|+|++|...|.-+.+.+.-+.+.|..| +.+++-+|.|.+|.
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnL-------------------------Acc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNL-------------------------ACCKFYLGQYIEAK 111 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhH-------------------------HHHHHHHHHHHHHH
Confidence 34566789999999999999999999999887788888888 44445555555544
Q ss_pred HHHHHHHhh--------------------------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH
Q 048034 256 TKYEYLQGT--------------------------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY 309 (558)
Q Consensus 256 ~~~~~~~~~--------------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 309 (558)
..-.++.+. -.+..+-...+|.+++....|++|++.|++++..+|........+
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ 191 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYM 191 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHH
Confidence 433332110 012234455688899999999999999999999999988888888
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHH-ccCcCCHHHHHHhchhcc------
Q 048034 310 SNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRAL-KLNKNYLSAWTLMGHEYK------ 382 (558)
Q Consensus 310 ~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~------ 382 (558)
+.+++.+.-++-+..++.-.+...|+++.+....+...++.=+-..|..-.+... ..+..++.+-.++-|-++
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 9999999999999999999999999999999888887776533333333333222 233344444444444333
Q ss_pred ----------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCH--------------
Q 048034 383 ----------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML-------------- 438 (558)
Q Consensus 383 ----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~-------------- 438 (558)
.--+.+..+|...|..+++..+|+...+ .++|..|.-+...|.+... .|+-
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aa--lGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAA--LGQETGSREHLKIAQQFF 346 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHH--hhhhcCcHHHHHHHHHHH
Confidence 2345677788888888888888877665 3567777666666666665 5543
Q ss_pred -----------------------------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 439 -----------------------------EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 439 -----------------------------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
++.+.++...-...-++....+++|..+...|++.+|.+.|-+.-.
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~----- 421 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISG----- 421 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-----
Confidence 3333333333333334455667788888888888888887766443
Q ss_pred hhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 490 EREG-PNMVEALIFLATHCRAHNRFEDAEVYCTR 522 (558)
Q Consensus 490 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 522 (558)
.. .+......+||+||...|..+-|...+-+
T Consensus 422 --~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 422 --PEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred --hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 11 23344455688888888888888777654
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=7.3e-11 Score=114.44 Aligned_cols=378 Identities=15% Similarity=0.105 Sum_probs=247.1
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccC----ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHH
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTG----KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELST 167 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~----~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 167 (558)
+.+----++++...|+.|+.+.+.... ..-.|-+.||.|-.+.. ++++. .
T Consensus 48 a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~---Dealk-----------------------~ 101 (652)
T KOG2376|consen 48 AIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL---DEALK-----------------------T 101 (652)
T ss_pred hHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH---HHHHH-----------------------H
Confidence 334445677888999999987776532 22235677887774422 22221 1
Q ss_pred hhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhh--hc--CHHHhhcC--CCCchHHHHHHH
Q 048034 168 LRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSL--CT--TIDILNSI--NLNNHWMKDFFL 241 (558)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~--~~~~~~~l--~~~~~~~~~~~~ 241 (558)
+...++.+..+..+.|.+++++|+|++|.++|+..++.+..+.+.-.....+ .. ....+... ...+.+-..|+.
T Consensus 102 ~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~ 181 (652)
T KOG2376|consen 102 LKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNT 181 (652)
T ss_pred HhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHH
Confidence 1123566788999999999999999999999999998877766654433211 11 11112222 234577788999
Q ss_pred HHHHHHHhchHHHHHHHHHHHhh--------cCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchH
Q 048034 242 ASTYQELRMHNEALTKYEYLQGT--------FGFS-------NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDM 306 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~--------~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 306 (558)
+.++...|+|.+|++.+++++.+ +.+. ..+..+++.++..+|+..+|...|..+++.+|.+....
T Consensus 182 Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~ 261 (652)
T KOG2376|consen 182 ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSL 261 (652)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHH
Confidence 99999999999999999999442 1111 23678899999999999999999999999988776544
Q ss_pred HHHHHHHHhcCC-------------------------------------------------HhHHHHHHHHHhhcCCCCh
Q 048034 307 DMYSNVLYAKEC-------------------------------------------------FSALSYLAHRVFTTDKYRP 337 (558)
Q Consensus 307 ~~~~~~l~~~~~-------------------------------------------------~~~a~~l~~~~~~~~~~~~ 337 (558)
....+-+..... ...+..+.. .+.+..|
T Consensus 262 Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a---~lp~~~p 338 (652)
T KOG2376|consen 262 AVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA---SLPGMSP 338 (652)
T ss_pred HHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---hCCccCc
Confidence 443333222210 001111111 1111122
Q ss_pred hH---HHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHH----
Q 048034 338 ES---CCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFR---- 410 (558)
Q Consensus 338 ~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~---- 410 (558)
+. .........+...+.+|+.++....+..|... ..+...++++....|+++.|+..+.
T Consensus 339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s--------------~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 339 ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS--------------KVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 21 12222333333356667777766666666642 3467788999999999999999998
Q ss_pred ----HHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 048034 411 ----KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYY 479 (558)
Q Consensus 411 ----~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 479 (558)
...+.. ..|.+-..+-..+.+ .+..+.|...+..|+.- .+.....+...+..-.+.|+-++|...+
T Consensus 405 ~~~ss~~~~~-~~P~~V~aiv~l~~~--~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILEAK-HLPGTVGAIVALYYK--IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhc-cChhHHHHHHHHHHh--ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 333322 334455555556666 66655566666655543 3333446777788888889999999999
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 480 KKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRL 523 (558)
Q Consensus 480 ~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 523 (558)
++.++ ..|++..++..+...|... +.++|..+-++.
T Consensus 482 eel~k-------~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVK-------FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHH-------hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99998 6788899998888777665 677777766554
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=5e-13 Score=117.38 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=148.1
Q ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC
Q 048034 288 VEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 288 A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 367 (558)
+...+-+....+|.+.+. ..+...++..|+.+.............|.+.......|......|++..|+..++++..+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 333444444455555555 5555555555555555555555555666667777779999999999999999999999999
Q ss_pred cCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 368 KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 368 p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
|++ .++|..+|.+|.+.|+++.|...|.+++++.|+++.+.+++|..+.- .|+++.|..++..
T Consensus 131 p~d---------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L--~gd~~~A~~lll~ 193 (257)
T COG5010 131 PTD---------------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL--RGDLEDAETLLLP 193 (257)
T ss_pred CCC---------------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH--cCCHHHHHHHHHH
Confidence 984 45789999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 448 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 448 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+....+.+..+..+++.+...+|++++|.....+-+.
T Consensus 194 a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 194 AYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 9999998999999999999999999999987665443
No 96
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.57 E-value=3.6e-13 Score=140.30 Aligned_cols=137 Identities=17% Similarity=0.069 Sum_probs=80.3
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
..+++.||.+....|.+++|...++.++++.|++..++..++.++.+ .+++++|+..+++++..+|++..+++.+|.+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~--~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR--QQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 34555555555566666666666666666666666666666666655 5666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
+.++|++++|+..|++++. ..|+...++..+|.++...|+.++|...|+++++...+..
T Consensus 164 l~~~g~~~~A~~~y~~~~~-------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 164 WDEIGQSEQADACFERLSR-------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHhcchHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 6666666666666666555 3455555555666666666666666666666655544444
No 97
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=1.5e-11 Score=106.92 Aligned_cols=177 Identities=14% Similarity=0.088 Sum_probs=157.2
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 320 (558)
...+.+..|+.+-|..+++++...+|++..+....|..+...|++++|+++|+.+++.+|.+......-..++-.+|+..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 36677889999999999999999999999999999999999999999999999999999999888887777888889999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcC
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMH 400 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 400 (558)
++...+...++..+.+.++|..++.+|...|+|++|.-++++.+-+.|.++.. +..+|.+++.+|
T Consensus 138 ~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~---------------f~rlae~~Yt~g 202 (289)
T KOG3060|consen 138 EAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLY---------------FQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHH---------------HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999996654 444555554444
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 048034 401 ---MPFYALHYFRKSVFLQPNDSRLWIAMAQCYET 432 (558)
Q Consensus 401 ---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 432 (558)
+..-|.++|.++++++|.+.+.++.+-.|...
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 67789999999999999888888877666544
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=9.4e-13 Score=130.35 Aligned_cols=224 Identities=18% Similarity=0.249 Sum_probs=196.7
Q ss_pred CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH
Q 048034 230 NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY 309 (558)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 309 (558)
..|..|..+-.++..+...|-..+|+..+++.- .|.....||...|+..+|..+..+-++ .|.++..+..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 478899999999999999999999999999864 555688899999999999999999998 55566666666
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHH
Q 048034 310 SNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAW 389 (558)
Q Consensus 310 ~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 389 (558)
+.+.....-++++..+.+.. +..+...+|......++|+++.++++..++++|-.. ..|
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---------------~~w 522 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQL---------------GTW 522 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccch---------------hHH
Confidence 66666655566665555442 344677788888889999999999999999998854 479
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
+++|.+..+.+++..|..+|..++.+.|++..+|++++..|.. .++-.+|...+++|++.+-++..+|.+...+..+.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~--~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR--LKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH--HhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 9999999999999999999999999999999999999999999 99999999999999999988899999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 048034 470 GRDEEAAFYYKKDLER 485 (558)
Q Consensus 470 g~~~~A~~~~~~al~~ 485 (558)
|.+++|+..|.+.+..
T Consensus 601 ge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDL 616 (777)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998874
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=2.1e-12 Score=113.51 Aligned_cols=179 Identities=16% Similarity=0.095 Sum_probs=161.8
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 322 LSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 322 a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
+...+-.....+|.+..+ ..++..+...|+-+.+..+..++...+|.+.. ....+|......|+
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---------------ll~~~gk~~~~~g~ 115 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---------------LLAAQGKNQIRNGN 115 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH---------------HHHHHHHHHHHhcc
Confidence 444445556788988889 99999999999999999999998888887543 55668999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 402 PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
+.+|+..++++..+.|+++++|..+|.+|.+ .|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..
T Consensus 116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq--~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQ--LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred hHHHHHHHHHHhccCCCChhhhhHHHHHHHH--ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 482 DLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 482 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
+.. ..+.+..+..+++.+....|++++|.....+-+.
T Consensus 194 a~l-------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 194 AYL-------SPAADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHh-------CCCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 987 6677899999999999999999999987766544
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=7.2e-11 Score=109.58 Aligned_cols=271 Identities=12% Similarity=-0.033 Sum_probs=202.7
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-CcchHHHHHHHHHhcCCHh
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPY-RVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~ 320 (558)
|..-+..|+|.+|.....+.-+..+.....+..-+.+.-.+|+++.|-.++.++-+..++ ........+.++...++++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 556666778888888877777666666666666677777788888888888887776333 3344555667777778888
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH--------HHHHHhchhcc----------
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL--------SAWTLMGHEYK---------- 382 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~~~~~~~~~~---------- 382 (558)
.|..-+..+....|.++++......+|...|++........+.-+..--.. .+|..+-....
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 888888888888888888888888888888888777777665544321111 11111100000
Q ss_pred ---------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 383 ---------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 383 ---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
..++..-..++.-+...|.+++|.+....+++..-+. .....++.+ . .++...=++..++.++..|
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~L~~~~~~l--~--~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-RLCRLIPRL--R--PGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-hHHHHHhhc--C--CCCchHHHHHHHHHHHhCC
Confidence 4557777888889999999999999999999865433 322222222 3 7889999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 454 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 454 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
+++..+..+|.++.+.+.+.+|..+|+.+++ ..| +...+..+|.++.+.|+..+|...++.++.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-------~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK-------LRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-------cCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 334 477888999999999999999999999884
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.54 E-value=4.6e-11 Score=120.22 Aligned_cols=289 Identities=13% Similarity=0.045 Sum_probs=201.9
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHH
Q 048034 160 SLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDF 239 (558)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 239 (558)
.++..|.+..+.-.+...++-.+|.++.++|++++|...|...+..+|+|+..+..|..+.
T Consensus 22 ~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~------------------- 82 (517)
T PF12569_consen 22 EALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL------------------- 82 (517)
T ss_pred HHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH-------------------
Confidence 3334444444444566778899999999999999999999999999999999998884333
Q ss_pred HHHHHH-HHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHH-HHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 240 FLASTY-QELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVE-VVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 240 ~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
+... ....+.+.-..+|+++...+|.+..+.. +...+..-..|.... .++...+.. .-+.....+-.++....
T Consensus 83 --g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 83 --GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPE 157 (517)
T ss_pred --hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChh
Confidence 1110 1112345667788888888877554432 222222223343333 344444432 22233333333333233
Q ss_pred CHhHHHHHHHHHhhc---------------CCCCh--hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchh
Q 048034 318 CFSALSYLAHRVFTT---------------DKYRP--ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHE 380 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~---------------~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 380 (558)
+..-...++...... .|... .+++.++..|...|++++|+.+.++|+...|+.++
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e-------- 229 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE-------- 229 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--------
Confidence 333334444443211 11122 35578899999999999999999999999999554
Q ss_pred ccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c---
Q 048034 381 YKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--E--- 455 (558)
Q Consensus 381 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~--~--- 455 (558)
.++..|.++...|++.+|..+++.|..+++.|-.+....+..+.+ .|+.++|.+.+..-...+.+ .
T Consensus 230 -------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR--a~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 230 -------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR--AGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred -------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH--CCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 688999999999999999999999999999999998999999999 99999999999877655421 1
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 456 ----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 456 ----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
.......|.+|.+.|++..|+..|..+.+.+...
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1233456999999999999999999999877654
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.51 E-value=2.9e-12 Score=113.83 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=59.0
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH-HHcCC--
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY-EMMHM-- 401 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~~~-- 401 (558)
.+++.+..+|.+++.|..+|.+|...|++++|+..|+++++++|++.. ++..+|.++ ...|+
T Consensus 61 ~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------------~~~~lA~aL~~~~g~~~ 125 (198)
T PRK10370 61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------------LYAALATVLYYQAGQHM 125 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhcCCCC
Confidence 333333344444555555555555555555555555555555555332 344455442 34444
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048034 402 PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 454 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~ 454 (558)
+++|...++++++.+|+++.++..+|.++.. .|++++|+.+++++++..|.
T Consensus 126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~--~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 126 TPQTREMIDKALALDANEVTALMLLASDAFM--QADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred cHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCC
Confidence 3555555555555555555555555555555 55555555555555555444
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.51 E-value=6.5e-12 Score=131.79 Aligned_cols=225 Identities=14% Similarity=0.090 Sum_probs=187.1
Q ss_pred hhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc
Q 048034 204 NSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR 283 (558)
Q Consensus 204 ~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~ 283 (558)
...|.+..+|..| +..+...+++++|+..++..++.+|+...+++..|.++++.+
T Consensus 25 ~~~p~n~~a~~~L-------------------------i~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~ 79 (906)
T PRK14720 25 NYSLSKFKELDDL-------------------------IDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRR 79 (906)
T ss_pred cCCcchHHHHHHH-------------------------HHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc
Confidence 4568888888887 888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 048034 284 EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (558)
Q Consensus 284 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 363 (558)
++.++... .++...+.+.. + .+...+...+...+.+..+++.+|.||-..|+.++|...|+++
T Consensus 80 ~~~~~~lv--~~l~~~~~~~~--------------~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 80 PLNDSNLL--NLIDSFSQNLK--------------W-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred chhhhhhh--hhhhhcccccc--------------h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99888877 77766555432 2 2333344444556777789999999999999999999999999
Q ss_pred HccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Q 048034 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 443 (558)
Q Consensus 364 l~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~ 443 (558)
++.+|+++ .+..++|..|... +.++|+.++.+|+.. +.. .+++.++..
T Consensus 143 L~~D~~n~---------------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~--~kq~~~~~e 190 (906)
T PRK14720 143 VKADRDNP---------------EIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIK--KKQYVGIEE 190 (906)
T ss_pred HhcCcccH---------------HHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHh--hhcchHHHH
Confidence 99999855 4688888999888 999999999999876 566 778888999
Q ss_pred HHHHHHhcCCCcHHHH--------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 048034 444 CYRRAANCNDSEAIAL--------------------NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 503 (558)
Q Consensus 444 ~~~~al~~~~~~~~~~--------------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 503 (558)
...+.+..+|++...+ .-+=..|...+++++++.+++.+++ .++.+..+...+
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~-------~~~~n~~a~~~l 263 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE-------HDNKNNKAREEL 263 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh-------cCCcchhhHHHH
Confidence 8999888888765532 2223778888999999999999999 788899999999
Q ss_pred HHHHHH
Q 048034 504 ATHCRA 509 (558)
Q Consensus 504 a~~~~~ 509 (558)
+.+|..
T Consensus 264 ~~~y~~ 269 (906)
T PRK14720 264 IRFYKE 269 (906)
T ss_pred HHHHHH
Confidence 999973
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.6e-10 Score=105.95 Aligned_cols=285 Identities=16% Similarity=0.077 Sum_probs=218.2
Q ss_pred hhHHHHHHHHHHhhhCCCCchHHH-HHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCch
Q 048034 156 RELISLERELSTLRKNGTMDPFIL-YLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNH 234 (558)
Q Consensus 156 ~~l~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~ 234 (558)
+.+..+++.+.+..+..+ .|.+. ..-+....+.|+++.|-.++.++-+..+++.-.
T Consensus 98 G~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~---------------------- 154 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA---------------------- 154 (400)
T ss_pred CcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH----------------------
Confidence 345556666655444334 45544 445667788999999999999998874433222
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHH----
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYS---- 310 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~---- 310 (558)
..+..+......|++..|.....++++..|.++.++.....+|...|++.+...+..++-+..--+.+-...+-
T Consensus 155 --v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 155 --VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred --HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 22235889999999999999999999999999999999999999999999999999998876544333222221
Q ss_pred -HHHHhcCC---HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccch
Q 048034 311 -NVLYAKEC---FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDY 386 (558)
Q Consensus 311 -~~l~~~~~---~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 386 (558)
.++-...+ .+......+..-..-..+|.....++.-+...|++++|.+..+.+++..-+.
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---------------- 296 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---------------- 296 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh----------------
Confidence 12222222 2233334444445556678888999999999999999999999999876541
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
+....++ ....+++..=++..++.+...|+++..+..+|..+.+ .+.|.+|..+|+.+++..|+ ...+..+|.++
T Consensus 297 ~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k--~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~ 371 (400)
T COG3071 297 RLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK--NKLWGKASEALEAALKLRPS-ASDYAELADAL 371 (400)
T ss_pred hHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH--hhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHH
Confidence 1122222 2367888889999999999999999999999999999 99999999999999998875 56688999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 048034 467 HALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 467 ~~~g~~~~A~~~~~~al~~~ 486 (558)
.++|+..+|...++.++...
T Consensus 372 ~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 372 DQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999643
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.50 E-value=1.1e-12 Score=130.00 Aligned_cols=221 Identities=19% Similarity=0.106 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 048034 267 FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNY 346 (558)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~ 346 (558)
........+|..+...|-...|+..|++.-. +.....+|...|+..+|..+..+.++ .|.++..|+.+|++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erlem--------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLEM--------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHHH--------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 3345667799999999999999999998744 45567788888999999999999888 77788999999998
Q ss_pred HhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048034 347 YSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAM 426 (558)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 426 (558)
.....=|++|.++++.. +.++...+|......++|+++...++..++++|-....|+.+
T Consensus 467 ~~d~s~yEkawElsn~~---------------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~ 525 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYI---------------------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGL 525 (777)
T ss_pred ccChHHHHHHHHHhhhh---------------------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhc
Confidence 88777677777666543 234566777777788999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 427 AQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 427 a~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
|.+..+ .++++.|.++|.+++.++|++..+|++++..|.+.|+..+|...+.++++ -+..+..+|.+.-.+
T Consensus 526 G~~ALq--lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-------cn~~~w~iWENymlv 596 (777)
T KOG1128|consen 526 GCAALQ--LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-------CNYQHWQIWENYMLV 596 (777)
T ss_pred cHHHHH--HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-------cCCCCCeeeechhhh
Confidence 999999 99999999999999999999999999999999999999999999999999 557778899999999
Q ss_pred HHHcCCHHHHHHHHHHHhcc
Q 048034 507 CRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 507 ~~~~g~~~~A~~~~~~al~~ 526 (558)
....|.+++|++.|.+.+.+
T Consensus 597 svdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhcccHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.48 E-value=1e-11 Score=130.31 Aligned_cols=261 Identities=10% Similarity=0.018 Sum_probs=198.1
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhc
Q 048034 171 NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRM 250 (558)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (558)
-.|.+..++..+...+...|++++|+..+...+..+|.....++.++.++...+..+... ....+.......+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~-------lv~~l~~~~~~~~ 98 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSN-------LLNLIDSFSQNLK 98 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhh-------hhhhhhhcccccc
Confidence 357788899999999999999999999999999999999999988855433322211100 0011222222223
Q ss_pred hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHh
Q 048034 251 HNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVF 330 (558)
Q Consensus 251 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~ 330 (558)
+ .+++.+...+...+.+..+++.+|.||-++|+.++|...++++++.+|+++.++..+|..+... +.++|..++.+++
T Consensus 99 ~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 99 W-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 3 4444444444445666689999999999999999999999999999999999999999999999 9999999998866
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-----ccchHHHHHhHHHHHHcCCHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-----SIDYRAWYGLGQAYEMMHMPFYA 405 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----~~~~~~~~~lg~~~~~~~~~~~A 405 (558)
.. +...+++..+..+..+.+..+|.+.+....+-.... ..-...+.-+-..|...++|+++
T Consensus 177 ~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 177 YR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 55 677789999999999999999987765333221111 22334556666889999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH-----------------Hhc-CCHHHHHHHHHHHHhcCCC
Q 048034 406 LHYFRKSVFLQPNDSRLWIAMAQCYET-----------------EQL-HMLEEAIKCYRRAANCNDS 454 (558)
Q Consensus 406 ~~~~~~a~~~~p~~~~~~~~la~~~~~-----------------~~~-~~~~~A~~~~~~al~~~~~ 454 (558)
+.+++.+++.+|.|..+...++.||.. .+. ..+..|+..|++-+..++.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G 309 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTG 309 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCC
Confidence 999999999999999999999999975 001 3457788888887766554
No 107
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=1.4e-09 Score=106.42 Aligned_cols=385 Identities=14% Similarity=0.115 Sum_probs=255.7
Q ss_pred HHHHHhhcccchHHHHHHHhhccC---ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHH----
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTG---KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELST---- 167 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~---~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~---- 167 (558)
-||.-|+..|.|++|-.+++++.. ....|-..|-.|..-+........++....+........++--...++.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 679999999999999999999843 3344555565666554433333333211111111222233333333333
Q ss_pred --------hhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhh-hCCCCH-----HHHHHHHhhhcCHHHhhcCCCCc
Q 048034 168 --------LRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVN-SYPWNW-----NSWLELQSLCTTIDILNSINLNN 233 (558)
Q Consensus 168 --------~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~-----~~~~~l~~~~~~~~~~~~l~~~~ 233 (558)
++.++|.+..-|..+-.+ ..|+..+-+..|.++++ .+|.-. ..|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~f----------------- 393 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEF----------------- 393 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHH-----------------
Confidence 233456666666655444 46778888888888874 455332 334443
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHhhc-CCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--------
Q 048034 234 HWMKDFFLASTYQELRMHNEALTKYEYLQGTF-GFS---NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPY-------- 301 (558)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-------- 301 (558)
|..|...|+.+.|..+|+++.... +.- ..+|..-|..-....+++.|..+.+++...-..
T Consensus 394 --------aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 394 --------AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred --------HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 889999999999999999998743 322 567888888888889999999999988754221
Q ss_pred ----------CcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH
Q 048034 302 ----------RVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 302 ----------~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
....+..|+...-..|-++....+..+++++.--.|....+.|..+....-+++|.+.|++.+.+.+-
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~-- 543 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW-- 543 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC--
Confidence 11233445555556688888888999999998889999999999999999999999999999988754
Q ss_pred HHHHHhchhccccchHHHHH---hHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048034 372 SAWTLMGHEYKSIDYRAWYG---LGQAYEMMHMPFYALHYFRKSVFLQPND--SRLWIAMAQCYETEQLHMLEEAIKCYR 446 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~---lg~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~~~A~~~~~ 446 (558)
|..+.+|.. ....-....+.+.|...|++|++.+|.. ..++...+..-.. -|-...|+..|+
T Consensus 544 -----------p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe--~GLar~amsiye 610 (835)
T KOG2047|consen 544 -----------PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE--HGLARHAMSIYE 610 (835)
T ss_pred -----------ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hhHHHHHHHHHH
Confidence 333444443 2222233447889999999999988743 2345566666667 899999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 447 RAANCNDSEAIALNQLAKLHHA-----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCT 521 (558)
Q Consensus 447 ~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 521 (558)
+|-..-+... .+.+=++|.+ .| ...-...|+++++.+ .+..........|..-.+.|..+.|...|.
T Consensus 611 rat~~v~~a~--~l~myni~I~kaae~yG-v~~TR~iYekaIe~L-----p~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 611 RATSAVKEAQ--RLDMYNIYIKKAAEIYG-VPRTREIYEKAIESL-----PDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHhcCCHHH--HHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhC-----ChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 9866543221 2222222222 12 234567888888854 223334555667889999999999999998
Q ss_pred HHhccCCC
Q 048034 522 RLLDYTGP 529 (558)
Q Consensus 522 ~al~~~~~ 529 (558)
-+.++.+|
T Consensus 683 ~~sq~~dP 690 (835)
T KOG2047|consen 683 HGSQICDP 690 (835)
T ss_pred hhhhcCCC
Confidence 88776544
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=1.7e-11 Score=128.04 Aligned_cols=141 Identities=9% Similarity=-0.030 Sum_probs=130.3
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALH 407 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 407 (558)
......|.+++++..+|.+....|.+++|...++.++++.|++.. ++..++.++.+.+++++|+.
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------------a~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------------AFILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------------HHHHHHHHHHHhccHHHHHH
Confidence 334556777899999999999999999999999999999999655 67888999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 408 YFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 408 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
.+++++...|+++..++.+|.++.. .|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++.
T Consensus 142 ~~~~~l~~~p~~~~~~~~~a~~l~~--~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 142 EIELYFSGGSSSAREILLEAKSWDE--IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHH--hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999985
No 109
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.45 E-value=5.7e-13 Score=123.11 Aligned_cols=245 Identities=17% Similarity=0.171 Sum_probs=182.9
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCC----hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFS----NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
|.-+++.|++...+..|+.+++...++ ..++.++|.+|+..++|++|+++-..=+.+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla------------------ 85 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA------------------ 85 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH------------------
Confidence 888999999999999999999876554 3477889999999999999988654322211
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
+.+...-..+...-++|+.+...|.|++|+.+..+-+.+...-.+- -...+++|++|.+|.
T Consensus 86 ----------r~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDr---------v~e~RAlYNlgnvYh 146 (639)
T KOG1130|consen 86 ----------RLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDR---------VLESRALYNLGNVYH 146 (639)
T ss_pred ----------HHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHH---------HhhhHHHhhhhhhhh
Confidence 0011111224566779999999999999999999887765432221 013578999999998
Q ss_pred HcCCH--------------------HHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048034 398 MMHMP--------------------FYALHYFRKSVFLQPN------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 398 ~~~~~--------------------~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~ 451 (558)
..|+. +.|.++|..-+++... ..+++-++|..|+- +|+|+.|+...+.-+.+
T Consensus 147 akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl--LGdf~~ai~~H~~RL~i 224 (639)
T KOG1130|consen 147 AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL--LGDFDQAIHFHKLRLEI 224 (639)
T ss_pred hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee--eccHHHHHHHHHHHHHH
Confidence 77642 3455566555544322 24577889999999 99999999998887766
Q ss_pred CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 452 NDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 452 ~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.... ..++.++|.++.-+|+++.|+++|++.+.+..+.+ .........+.||..|.-..++++|+.|+.+-+.
T Consensus 225 a~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg-~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 225 AQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG-NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred HHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4332 34899999999999999999999999887554333 3345577888999999999999999999998876
Q ss_pred c
Q 048034 526 Y 526 (558)
Q Consensus 526 ~ 526 (558)
+
T Consensus 304 I 304 (639)
T KOG1130|consen 304 I 304 (639)
T ss_pred H
Confidence 5
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.8e-10 Score=99.18 Aligned_cols=198 Identities=16% Similarity=0.031 Sum_probs=121.9
Q ss_pred chHHHHHHHHHHHhh------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 250 MHNEALTKYEYLQGT------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 250 ~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
+.++-+++....+.. .++--.++-+...+....|+.+-|..+++++....|.........+..+-..|.+++|.
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 445555555555542 22233455567777888899999999999988888887766666666666666666666
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHH
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPF 403 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 403 (558)
.++...+..+|.+..++-..--+...+|+.-+|++.+..-++..+.+ ..+|..++.+|...|+|+
T Consensus 107 e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D---------------~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 107 EYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND---------------QEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc---------------HHHHHHHHHHHHhHhHHH
Confidence 66666666666666555555555555666666666666666555553 334555666666666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---MLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
+|..+|++.+-+.|.++..+..+|.+++. +| ++.-|.++|.++++++|.+..+++.+-.
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt--~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYT--QGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 66666666666666666666666666554 43 3444566666666666655555544433
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.45 E-value=2.1e-10 Score=128.12 Aligned_cols=323 Identities=13% Similarity=0.038 Sum_probs=231.6
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCC----HHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHh
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWN----WNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELR 249 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 249 (558)
.++.+....+.++...|++++|...+..+....+.. .... ........+.++...|
T Consensus 407 ~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~--------------------~~~~~~~~a~~~~~~g 466 (903)
T PRK04841 407 ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL--------------------QAEFNALRAQVAINDG 466 (903)
T ss_pred cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH--------------------HHHHHHHHHHHHHhCC
Confidence 345566677777788888888888887776542211 0000 0111223578888999
Q ss_pred chHHHHHHHHHHHhhcCCCh-----HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC------cchHHHHHHHHHhcCC
Q 048034 250 MHNEALTKYEYLQGTFGFSN-----YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR------VEDMDMYSNVLYAKEC 318 (558)
Q Consensus 250 ~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~~~~l~~~~~ 318 (558)
++++|...+++++...+... .+...+|.++...|++++|...+.+++...... ......++.+++..|+
T Consensus 467 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~ 546 (903)
T PRK04841 467 DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF 546 (903)
T ss_pred CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC
Confidence 99999999999988544432 245668889999999999999999998754322 1234556788899999
Q ss_pred HhHHHHHHHHHhhcCCC--------ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 319 FSALSYLAHRVFTTDKY--------RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
...+...+.+++..... ....+..+|.++...|++++|...+.+++......... .....+.
T Consensus 547 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----------~~~~~~~ 616 (903)
T PRK04841 547 LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ----------QQLQCLA 616 (903)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch----------HHHHHHH
Confidence 99999998887764221 22345678999999999999999999998865432111 0123566
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH----HH
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPND---SRLWI----AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI----AL 459 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~----~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~ 459 (558)
.+|.++...|+++.|...+.++..+.+.. ..... .....+.. .|+.+.|...+.......+.... .+
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM--TGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH--CCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 78999999999999999999997653321 11111 12344556 89999999998776653322222 25
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 048034 460 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 460 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 529 (558)
..++.++...|++++|...+++++......+ .......++..+|.++...|+.++|...+.+++++..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 6789999999999999999999998654332 23455678888999999999999999999999986533
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.44 E-value=3.9e-12 Score=106.74 Aligned_cols=117 Identities=18% Similarity=0.065 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 407 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 407 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
..|++++..+|++......+|.++.. .|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-- 79 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ--QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-- 79 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH--cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 46889999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHH
Q 048034 487 EAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 487 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 532 (558)
..|.++..++.+|.++...|++++|+.+|+++++++|.+..
T Consensus 80 -----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 -----LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -----cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 67889999999999999999999999999999999876554
No 113
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=5.3e-09 Score=102.58 Aligned_cols=363 Identities=17% Similarity=0.174 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChH---HHHH
Q 048034 121 SVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSEN---LART 197 (558)
Q Consensus 121 ~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~---~A~~ 197 (558)
..-++.|-+||.-..+..++.++.+...++.+.....+..+..+-....+.++.+..+|..+-....+.-+.- .-..
T Consensus 155 ets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda 234 (835)
T KOG2047|consen 155 ETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA 234 (835)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH
Confidence 3456788888888777777777765444433333333333332222223334444445554444443322211 1122
Q ss_pred HHHHHhhhCCCCHHH-HHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcC---CChH---
Q 048034 198 VLVESVNSYPWNWNS-WLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFG---FSNY--- 270 (558)
Q Consensus 198 ~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~--- 270 (558)
+++..+..+|+.+.- |.. +|..|.+.|.+++|...|++++..-- +...
T Consensus 235 iiR~gi~rftDq~g~Lw~S-------------------------LAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd 289 (835)
T KOG2047|consen 235 IIRGGIRRFTDQLGFLWCS-------------------------LADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFD 289 (835)
T ss_pred HHHhhcccCcHHHHHHHHH-------------------------HHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHH
Confidence 344444444433321 222 36666666666666666666655211 1111
Q ss_pred --HHHHHHHHHHHcc-------------cHHHHHHHHHHHH------------HcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 271 --LQAQIAKAQYSLR-------------EFEQVEVVFEELL------------RNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 271 --~~~~~a~~~~~~~-------------~~~~A~~~~~~~l------------~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
+.+.-..+...++ +.+-....|+.++ ..+|++++.+.. .+-...++..+-.
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i 367 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHH
Confidence 1111111111111 1222333333333 344555444333 2223345454444
Q ss_pred HHHHHHh-hcCCCC-----hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 324 YLAHRVF-TTDKYR-----PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 324 ~l~~~~~-~~~~~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
....+++ ..+|.. ...|+..|..|...|+.+.|...|+++.+..-...+- -..+|..-|..-.
T Consensus 368 ~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d-----------La~vw~~waemEl 436 (835)
T KOG2047|consen 368 NTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED-----------LAEVWCAWAEMEL 436 (835)
T ss_pred HHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH-----------HHHHHHHHHHHHH
Confidence 4444433 345543 2467778888888888888888888887765443321 2346666677667
Q ss_pred HcCCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPN------------------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 459 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~------------------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 459 (558)
+..+++.|+...++|...... +..+|..++..... .|-++.....|++.+.+.--.|.+.
T Consensus 437 rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs--~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 437 RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES--LGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHhcCCHHHH
Confidence 777777777777776644211 23456666666666 7777777777777777766666777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH-HHHHHH--cCCHHHHHHHHHHHhccCC
Q 048034 460 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL-ATHCRA--HNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 460 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l-a~~~~~--~g~~~~A~~~~~~al~~~~ 528 (558)
.+.|..+....-+++|.+.|++.+.++ .-|...++|... -..-.+ --..+.|...|++|++..|
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LF-----k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLF-----KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccC-----CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 777777777777777777777777654 335545555432 222112 2356677777777777655
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.41 E-value=1.1e-11 Score=101.94 Aligned_cols=100 Identities=17% Similarity=0.082 Sum_probs=96.4
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
+....|.+|..+...|++++|...|+-++.++|.+...|++||.|+.. +|++++|+.+|.+++.++|+++..+++.|.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~--~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA--QKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 445788999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~ 486 (558)
++...|+.+.|...|+.++..+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999965
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.40 E-value=1.2e-11 Score=103.87 Aligned_cols=110 Identities=26% Similarity=0.319 Sum_probs=104.1
Q ss_pred HHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 048034 358 VYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 437 (558)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 437 (558)
..|++++..+|++. .+.+.+|..+...|++++|+..|++++..+|.++.+|..+|.++.. .|+
T Consensus 4 ~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~--~~~ 66 (135)
T TIGR02552 4 ATLKDLLGLDSEQL---------------EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM--LKE 66 (135)
T ss_pred hhHHHHHcCChhhH---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--HHH
Confidence 46788999998854 4678899999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 438 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 438 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+++|+.++++++..+|.++..++.+|.++...|++++|+..|+++++
T Consensus 67 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 67 YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.39 E-value=8.6e-12 Score=117.17 Aligned_cols=258 Identities=14% Similarity=0.067 Sum_probs=187.6
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFG-FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF 319 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 319 (558)
-.+-++-.|+|..++..++ .....+ ........+.+++..+|+++..+.-... ..+....++..++..+...++.
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccch
Confidence 3666778899999998777 222222 2344667789999999998876544432 3344456666666655554555
Q ss_pred hHHHHHHHHHhhcC-C-CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 320 SALSYLAHRVFTTD-K-YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 320 ~~a~~l~~~~~~~~-~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
+....-+...+... + .++.+....|.++...|++++|++.+.+. . +.+......++|.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~---------------~lE~~al~Vqi~L 142 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----G---------------SLELLALAVQILL 142 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T---------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C---------------cccHHHHHHHHHH
Confidence 55555555544332 2 34566677788899999999998877653 2 2234556778999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH--MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
.+++++.|.+.++.+.+.+.+........+++... .| .+.+|...|+......+.++..+..++.++..+|++++|
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~--~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA--TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH--HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999887776666666666666 55 699999999998888888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCcH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRF-EDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~ 531 (558)
...++++++ .+|.++.++.+++.+....|+. +.+.+++.++...+|.++
T Consensus 221 e~~L~~al~-------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 221 EELLEEALE-------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCC-------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHH-------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 999999987 7899999999999999999998 667788888888877655
No 117
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.38 E-value=1.3e-11 Score=115.97 Aligned_cols=231 Identities=15% Similarity=0.121 Sum_probs=176.8
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhh
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRK 170 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (558)
...++++|+|+-+|+|+..+.-+.+..++...-++.++.|+.....+.... ..+.....
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l---------------------~~l~~~~~ 94 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL---------------------EELKELLA 94 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH---------------------HHHHHCCC
T ss_pred HHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH---------------------HHHHHHHH
Confidence 455678999999999999888887777777777788889886643332222 22333222
Q ss_pred C--CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH
Q 048034 171 N--GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL 248 (558)
Q Consensus 171 ~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (558)
. ++.++.+....|.++...|++++|++.+.+. .+.++... ...+++..
T Consensus 95 ~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al-------------------------~Vqi~L~~ 144 (290)
T PF04733_consen 95 DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLAL-------------------------AVQILLKM 144 (290)
T ss_dssp TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHH-------------------------HHHHHHHT
T ss_pred hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHH-------------------------HHHHHHHc
Confidence 1 2356778888899999999999999888764 34444433 37889999
Q ss_pred hchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 048034 249 RMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR--EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLA 326 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~ 326 (558)
++++.|.+.++.+.+.+.++.-+....|++.+..| .+.+|...|+++.+..+.++..+..++.+...+|++++|..++
T Consensus 145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998888777666666677777766 5999999999998888888888899999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHhhcCCh-HHHHHHHHHHHccCcCCHH
Q 048034 327 HRVFTTDKYRPESCCIIGNYYSLKGQH-EKSVVYFRRALKLNKNYLS 372 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~ 372 (558)
.+++..+|.+++++.+++.+....|+. +.+.+++.+....+|+++.
T Consensus 225 ~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 225 EEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999998 6677788888888888654
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=2.3e-11 Score=100.09 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=98.7
Q ss_pred hhcC-CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHH
Q 048034 330 FTTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHY 408 (558)
Q Consensus 330 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 408 (558)
..+. ++.-+..+.+|..+...|++++|...|+-+..++|.+. +.|++||.++..+|++.+|+..
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~---------------~y~~gLG~~~Q~~g~~~~AI~a 91 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF---------------DYWFRLGECCQAQKHWGEAIYA 91 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHHhhHHHHHHH
Confidence 3455 66678889999999999999999999999999999844 5799999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048034 409 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 454 (558)
Q Consensus 409 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~ 454 (558)
|.+++.++|++++.+.++|.|+.. .|+.+.|+++|+.++.....
T Consensus 92 Y~~A~~L~~ddp~~~~~ag~c~L~--lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 92 YGRAAQIKIDAPQAPWAAAECYLA--CDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 99999999999999988633
No 119
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=111.21 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
++.+-.-|+-.+..++|.+|+..|.+|++++|++ +..|.+.+.+|.++|+++.|++-++.++.++
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------AVyycNRAAAy~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------AVYYCNRAAAYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------------chHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 3456667999999999999999999999999994 4578899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHH
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE---EAAFYYKKD 482 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~a 482 (558)
|...++|..||.+|.. +|++++|+..|+++++++|++...+.+|..+-.+++... .+...++-+
T Consensus 146 p~yskay~RLG~A~~~--~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~ 212 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLA--LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMA 212 (304)
T ss_pred hHHHHHHHHHHHHHHc--cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhh
Confidence 9999999999999999 999999999999999999999999999888888777766 444444433
No 120
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.1e-10 Score=102.06 Aligned_cols=186 Identities=17% Similarity=0.085 Sum_probs=120.0
Q ss_pred HhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcC
Q 048034 187 KDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFG 266 (558)
Q Consensus 187 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p 266 (558)
.+..+|..|++++..-.+..|.+..+...| |.||....++..|..+|+++-..+|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlL-------------------------gyCYY~~Q~f~~AA~CYeQL~ql~P 75 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLL-------------------------GYCYYRLQEFALAAECYEQLGQLHP 75 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 445567777777777777777666666555 7777777777777777777777777
Q ss_pred CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 048034 267 FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNY 346 (558)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~ 346 (558)
......+..|..+++.+.+..|+.....+...+.-....+..-+.+.+..++...+..++++.- ..+.+.+....|.+
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchhe
Confidence 7766667777777777777777776666554322223344455566666666666666655421 12445566667777
Q ss_pred HhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 347 YSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.++.|+++.|++-|+.|++...-.+ -.-++++.++++.|++..|+++....++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp---------------llAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP---------------LLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc---------------hhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7777777777777777776654422 2455666777777777777766665554
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.9e-11 Score=109.60 Aligned_cols=119 Identities=23% Similarity=0.184 Sum_probs=110.7
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
.-+-.-|.-....++|.+|+..|.+|+.++|.++..|.+.+.+|.+ +|.++.|++.++.++.++|....+|..||.+|
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~--Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK--LGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH--hcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4466778889999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHH
Q 048034 467 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFE 514 (558)
Q Consensus 467 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 514 (558)
..+|++++|++.|+++++ .+|++......|..+-.+.++..
T Consensus 160 ~~~gk~~~A~~aykKaLe-------ldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALE-------LDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HccCcHHHHHHHHHhhhc-------cCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 78999988888877777766655
No 122
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=4.3e-10 Score=100.13 Aligned_cols=268 Identities=13% Similarity=-0.007 Sum_probs=203.1
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHH
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSY 324 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~ 324 (558)
+.+..+|..|++++..-.+..|.+...+..+|.||+...+|..|..+|+++-...|.........+..++..+.+..|..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999988888889999999999999988
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHH
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFY 404 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 404 (558)
.+..+...+.-..+..-.-+-+.+..+++..+....++. |. .++.....+.|.+.++.|+++.
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~-------------en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PS-------------ENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cC-------------CCccchhccchheeeccccHHH
Confidence 887766554334455555666777778877776655543 32 1244577889999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC----------------c---------
Q 048034 405 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS----------------E--------- 455 (558)
Q Consensus 405 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~----~~~----------------~--------- 455 (558)
|++-|+.|++....++..-++++.+++. .|++..|+++..+.++. .|. +
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy~--~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHYS--SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHh--hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999999999999999999999999 99999999988877654 232 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAK 535 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 535 (558)
..+++..+.++++.|+++.|.+.+... +... ...-++..+.++|..- ..|++.+..+-+.=.++++|--.+...
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDm----PPRa-E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFA 314 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDM----PPRA-EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFA 314 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcC----CCcc-cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHH
Confidence 235667788899999999887755432 1110 1122344555555432 235555666666666666664445444
Q ss_pred HH
Q 048034 536 SM 537 (558)
Q Consensus 536 ~l 537 (558)
.+
T Consensus 315 Nl 316 (459)
T KOG4340|consen 315 NL 316 (459)
T ss_pred HH
Confidence 43
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=2.8e-09 Score=101.96 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=64.4
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhH
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSA 321 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~ 321 (558)
+..++..|++++|...++.++...|++++.+...+.++...++..+|.+.+++++..+|+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------------------- 373 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS------------------- 373 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------------------
Confidence 6667777777777777777777777777777777777777777777777777777777665
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcC
Q 048034 322 LSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKN 369 (558)
Q Consensus 322 a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 369 (558)
+..+.++|+.+...|++.+|+..+++.+..+|+
T Consensus 374 ---------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 374 ---------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred ---------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 445555566666666666666666666555555
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=6.2e-10 Score=106.29 Aligned_cols=146 Identities=16% Similarity=0.076 Sum_probs=131.0
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
..++|+.+..++..|+++.|+..++..+...|+|+..+...+.++.. .++..+|.+.+++++..+|..+..+.++|..
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~--~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE--ANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGM 541 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~ 541 (558)
+.+.|++.+|+..++..+. ..|+++..|..||+.|..+|+..+|...+.....+. ...+.+...+...
T Consensus 384 ll~~g~~~eai~~L~~~~~-------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~-G~~~~A~~~l~~A 451 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLF-------NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA-GRLEQAIIFLMRA 451 (484)
T ss_pred HHhcCChHHHHHHHHHHhh-------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 9999999999999999998 789999999999999999888888888887777765 4555554444433
No 125
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.22 E-value=2.9e-10 Score=111.06 Aligned_cols=113 Identities=16% Similarity=0.065 Sum_probs=107.2
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 468 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 468 (558)
+...|..++..|++++|+..|+++++++|+++.++..+|.++.. +|++++|+..+++++.++|.++.+++.+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~--~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK--LGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc
Q 048034 469 LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH 510 (558)
Q Consensus 469 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 510 (558)
+|++++|+..|+++++ ..|.+..+..+++.+..+.
T Consensus 83 lg~~~eA~~~~~~al~-------l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 83 LEEYQTAKAALEKGAS-------LAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999 6799999999998886665
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.22 E-value=4.2e-09 Score=96.66 Aligned_cols=188 Identities=15% Similarity=0.069 Sum_probs=147.5
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
.++..+|..|..+...|++++|+..|++++..+|....+.... +.+|.++.+.+++++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~----------------------l~la~ayy~~~~y~~ 87 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQ----------------------LDLIYAYYKNADLPL 87 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH----------------------HHHHHHHHhcCCHHH
Confidence 4677899999999999999999999999999999886554322 345999999999999
Q ss_pred HHHHHHHHHhhcCCCh---HHHHHHHHHHHHcc------------------cHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 048034 254 ALTKYEYLQGTFGFSN---YLQAQIAKAQYSLR------------------EFEQVEVVFEELLRNDPYRVEDMDMYSNV 312 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~------------------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (558)
|+..+++.++.+|+++ .+++.+|.++...+ ...+|+..|+++++..|+..-+-...-.+
T Consensus 88 A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 88 AQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 9999999999888764 57888888765443 13578899999999999874332221111
Q ss_pred HHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHh
Q 048034 313 LYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 313 l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
.. +...-..--+.+|..|.+.|.|..|+.-|+.+++..|+... ...+.+.+
T Consensus 168 ~~-----------------l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~------------~~eal~~l 218 (243)
T PRK10866 168 VF-----------------LKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA------------TRDALPLM 218 (243)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch------------HHHHHHHH
Confidence 11 11111233457899999999999999999999999998755 46788999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 048034 393 GQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a 412 (558)
+.+|..+|..++|..+....
T Consensus 219 ~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 219 ENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCChHHHHHHHHHH
Confidence 99999999999998876543
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=3.2e-09 Score=95.26 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=134.9
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
.++..+|..|..++..|++.+|+..|++++..+|...-+-.. .+.+|.++...|++.+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A----------------------~l~la~a~y~~~~y~~ 60 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQA----------------------QLMLAYAYYKQGDYEE 60 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHH----------------------HHHHHHHHHHTT-HHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHH----------------------HHHHHHHHHHcCCHHH
Confidence 457789999999999999999999999999999976543322 2445999999999999
Q ss_pred HHHHHHHHHhhcCCCh---HHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH
Q 048034 254 ALTKYEYLQGTFGFSN---YLQAQIAKAQYSLR-----------EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF 319 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 319 (558)
|+..+++.+..+|+++ .+++.+|.+++... ...+|+..|+.++...|+..-+-...-.+-.
T Consensus 61 A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~----- 135 (203)
T PF13525_consen 61 AIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE----- 135 (203)
T ss_dssp HHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH-----
Confidence 9999999999999875 57888888877653 3458999999999999997654322111110
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 399 (558)
+...-..--+.+|..|...|.+..|+..|+.+++..|+...+ ..++..++.+|..+
T Consensus 136 ------------l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~------------~~al~~l~~~y~~l 191 (203)
T PF13525_consen 136 ------------LRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA------------EEALARLAEAYYKL 191 (203)
T ss_dssp ------------HHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH------------HHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH------------HHHHHHHHHHHHHh
Confidence 000112344568999999999999999999999999997663 46788999999999
Q ss_pred CCHHHHH
Q 048034 400 HMPFYAL 406 (558)
Q Consensus 400 ~~~~~A~ 406 (558)
|..+.|.
T Consensus 192 ~~~~~a~ 198 (203)
T PF13525_consen 192 GLKQAAD 198 (203)
T ss_dssp T-HHHHH
T ss_pred CChHHHH
Confidence 9988543
No 128
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.21 E-value=1e-08 Score=93.89 Aligned_cols=320 Identities=16% Similarity=0.119 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
+.-....|.-++...++++|+..+.+.+..-.+...-+..++. +..+..+.|.+++++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~----------------------l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGC----------------------LVTAHSEMGRYKEML 63 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------chhhhhhhHHHHHHH
Confidence 3346677888888899999999998888754433333333322 233344444444443
Q ss_pred HHHHHHHhhcCC------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc-----chHHHHHHHHHhcCCHhHHHH
Q 048034 256 TKYEYLQGTFGF------SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV-----EDMDMYSNVLYAKECFSALSY 324 (558)
Q Consensus 256 ~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~~~~~l~~~~~~~~a~~ 324 (558)
..--..+....+ .-+++..++..+....++.+++.+-+..+..-..++ .....+++...-++.++++..
T Consensus 64 ~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le 143 (518)
T KOG1941|consen 64 KFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE 143 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence 322222211100 012334445555555555555555444443321111 223334444444445555555
Q ss_pred HHHHHhhcCCC------ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH-HHHHHhchhccccchHHHHHhHHHHH
Q 048034 325 LAHRVFTTDKY------RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL-SAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 325 l~~~~~~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
.++.++..... .-.++..+|..|....++++|.-+..+|..+-.... .-|... ....+.+.++..+.
T Consensus 144 sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k------yr~~~lyhmaValR 217 (518)
T KOG1941|consen 144 SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK------YRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH------HHHHHHHHHHHHHH
Confidence 55554443222 236889999999999999999999999988754432 111111 12346888999999
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C--cHHHHHHHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQ------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND----S--EAIALNQLAKL 465 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~----~--~~~~~~~la~~ 465 (558)
.+|..-.|.++.+++.++. +...+....+|.+|.. .|+.+.|..-|+.|..... . ...++...|++
T Consensus 218 ~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~--~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc 295 (518)
T KOG1941|consen 218 LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS--RGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKC 295 (518)
T ss_pred HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh--cccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999987752 3345677889999999 9999999999999986532 2 23366677777
Q ss_pred HHHcCCHHH-----HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 466 HHALGRDEE-----AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 466 ~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
+....-..+ |++.-+++++...+.+ ..-.....+..++.+|..+|.-++=...+.++-+.
T Consensus 296 ~~~~r~~~k~~~Crale~n~r~levA~~IG-~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 296 LETLRLQNKICNCRALEFNTRLLEVASSIG-AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 766555555 8888889888665443 22334577888999999999888877777766543
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.20 E-value=4e-10 Score=110.06 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=105.1
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 048034 340 CCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND 419 (558)
Q Consensus 340 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~ 419 (558)
+...|...+..|++++|+.+|++++.++|++. .+|+.+|.+|..+|++++|+..+++++.++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---------------ELYADRAQANIKLGNFTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 45578889999999999999999999999855 468899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
+.+++.+|.++.. +|++++|+..|++++.++|++..+...++.+..++
T Consensus 70 ~~a~~~lg~~~~~--lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 70 AKAYLRKGTACMK--LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999988888886665
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=6e-08 Score=108.57 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 500 LIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 500 ~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
+..+|.++...|++++|...+.+++..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999874
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.18 E-value=6.5e-09 Score=95.44 Aligned_cols=171 Identities=10% Similarity=-0.007 Sum_probs=138.5
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.++..++..|..+...|++++|+..|++++...|....+ ..+.+.+|.+|.+.+++++|+..|++.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a------------~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYS------------QQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 356678888899999999999999999999998886542 34578899999999999999999999999
Q ss_pred cCCCC---HHHHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHhcCCCcHH----------------
Q 048034 415 LQPND---SRLWIAMAQCYETEQLH------------------MLEEAIKCYRRAANCNDSEAI---------------- 457 (558)
Q Consensus 415 ~~p~~---~~~~~~la~~~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~---------------- 457 (558)
..|++ +.+++.+|.++.. .+ ...+|+..|++.++..|+...
T Consensus 98 ~~P~~~~~~~a~Y~~g~~~~~--~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 98 LNPTHPNIDYVLYMRGLTNMA--LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred hCcCCCchHHHHHHHHHhhhh--cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 88876 4567788877644 33 135788889999998887532
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 458 -ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRL 523 (558)
Q Consensus 458 -~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 523 (558)
--+.+|..|.+.|.+..|+.-++.+++.++ ..+...+++..++..|...|..++|..+....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYP----DTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCC----CCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 123568889999999999999999999765 55778899999999999999999999877654
No 132
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.18 E-value=1.1e-09 Score=95.82 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=108.8
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALN 460 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 460 (558)
.....++.+|..+...|++++|+.+|++++...|+. ..++..+|.++.. .|++++|+..+++++...|.+...+.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS--NGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 355678999999999999999999999999887653 4689999999999 99999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 048034 461 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRG 540 (558)
Q Consensus 461 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~ 540 (558)
.+|.++...|+...+...++.++. .+++|.+++++++..+|++...+...++.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~---------------------------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA---------------------------LFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH---------------------------HHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 999999999998887766655543 26778888888888887776555555554
Q ss_pred HH
Q 048034 541 MR 542 (558)
Q Consensus 541 ~~ 542 (558)
++
T Consensus 164 ~~ 165 (172)
T PRK02603 164 TG 165 (172)
T ss_pred cC
Confidence 44
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=1.3e-09 Score=94.93 Aligned_cols=124 Identities=17% Similarity=0.126 Sum_probs=95.7
Q ss_pred CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 048034 351 GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND---SRLWIAMA 427 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la 427 (558)
+.+..+...+...++..+... ....|+.+|.++...|++++|+..|++++.+.|+. +.++.++|
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~-------------~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg 79 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEK-------------EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIG 79 (168)
T ss_pred cccccchhhhhHhccCCchhH-------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 345555555655555554432 24578999999999999999999999999887663 45899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHhh
Q 048034 428 QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH-------ALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 428 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~ 489 (558)
.++.. .|++++|+.+|++++.+.|.....+..+|.++. ..|++++|+..+.+++..++..
T Consensus 80 ~~~~~--~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 80 LIHTS--NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999988 5555555555555554444333
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.2e-09 Score=97.27 Aligned_cols=132 Identities=18% Similarity=0.207 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHH
Q 048034 402 PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG---RDEEAAFY 478 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~ 478 (558)
.+.-+.-++.-+..+|+|+.-|..||.+|.. +|++..|...|.+|+++.|+++..+..+|.++..+. ...++...
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~--~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMA--LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4556667788888999999999999999999 999999999999999999999999999999887654 35789999
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 048034 479 YKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMR 542 (558)
Q Consensus 479 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~ 542 (558)
+++++. .+|.+..+.+.||..++..|+|.+|...+++.++..|++......+-+.+.
T Consensus 216 l~~al~-------~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 216 LRQALA-------LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHHh-------cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 999999 889999999999999999999999999999999998887655443433333
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.14 E-value=3e-09 Score=95.44 Aligned_cols=164 Identities=21% Similarity=0.227 Sum_probs=120.9
Q ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 048034 268 SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYY 347 (558)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~ 347 (558)
++..++..|..++..|+|.+|+..|++++...|.... .+.+.+.+|.++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-------------------------------a~~A~l~la~a~ 52 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-------------------------------APQAQLMLAYAY 52 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-------------------------------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-------------------------------HHHHHHHHHHHH
Confidence 4556777888888888888888888888888777533 256777888888
Q ss_pred hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc-----------CCHHHHHHHHHHHHhcC
Q 048034 348 SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM-----------HMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~a~~~~ 416 (558)
+..|++++|+..|++.++..|++.. ...+++.+|.++... +...+|+..|+..+...
T Consensus 53 y~~~~y~~A~~~~~~fi~~yP~~~~------------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 53 YKQGDYEEAIAAYERFIKLYPNSPK------------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHTT-HHHHHHHHHHHHHH-TT-TT------------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCcc------------hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 8888888888888888888887643 234566666665443 33458999999999999
Q ss_pred CCCHHH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHH
Q 048034 417 PNDSRL-----------------WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI---ALNQLAKLHHALGRDEEAA 476 (558)
Q Consensus 417 p~~~~~-----------------~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~g~~~~A~ 476 (558)
|++..+ -..+|..|.+ .|.+..|+..++.+++..|+.+. ++..++..|.++|..+.|.
T Consensus 121 P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~--~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 121 PNSEYAEEAKKRLAELRNRLAEHELYIARFYYK--RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 986422 2456888888 99999999999999999998754 8899999999999988554
No 136
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=3.5e-09 Score=92.23 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHH
Q 048034 401 MPFYALHYFRKSVFLQPND--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 401 ~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A 475 (558)
.+..+...+...++..+.+ ...|+.+|.++.. .|++++|+..|++++.+.|+. +.++.++|.++...|++++|
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~--~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS--EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 3455555555554455544 5678999999999 999999999999999887653 45899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHhccCCCcHHHHHHHHHHH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCR-------AHNRFE-------DAEVYCTRLLDYTGPEKETAKSMLRGM 541 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~~~~~~~~~~ll~~~ 541 (558)
+.++++++. ..|.....+..+|.++. ..|+++ +|..+|++++..+|++.......+..+
T Consensus 92 ~~~~~~Al~-------~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (168)
T CHL00033 92 LEYYFQALE-------RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKIT 164 (168)
T ss_pred HHHHHHHHH-------hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHh
Confidence 999999998 56777788888888887 777766 667777778888888777776666666
Q ss_pred HH
Q 048034 542 RM 543 (558)
Q Consensus 542 ~~ 543 (558)
++
T Consensus 165 ~~ 166 (168)
T CHL00033 165 GR 166 (168)
T ss_pred cC
Confidence 54
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.09 E-value=2.7e-09 Score=93.27 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=89.4
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
+..+..++.+|..+...|++++|+.+|+++++..|+... ...++..+|.++...|++++|+.+|++++
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999998776332 23578999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCH--------------HHHHHHHHHHHhcCCCc
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHML--------------EEAIKCYRRAANCNDSE 455 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~--------------~~A~~~~~~al~~~~~~ 455 (558)
...|.++..+..+|.++.. .|+. ++|++++++++..+|++
T Consensus 100 ~~~p~~~~~~~~lg~~~~~--~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHK--RGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HhCcccHHHHHHHHHHHHH--cCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999999998 8884 44555555555555543
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.08 E-value=2.5e-09 Score=87.38 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
+.+++.+|..+...|++++|+..|.+++..+|++.. ...+++.+|.++...|+++.|+.+|++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 456778888888888888888888888888776432 23467788888888888888888888888877
Q ss_pred CCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 048034 417 PND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 459 (558)
Q Consensus 417 p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 459 (558)
|++ +.++..+|.++.. .|++++|+..+++++...|++..+.
T Consensus 70 p~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQE--LGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred CCCCcccHHHHHHHHHHHH--hCChHHHHHHHHHHHHHCcCChhHH
Confidence 774 5678888888888 8888888888888888888776543
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=5.1e-10 Score=81.31 Aligned_cols=67 Identities=31% Similarity=0.504 Sum_probs=54.7
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH-MLEEAIKCYRRAANCND 453 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~-~~~~A~~~~~~al~~~~ 453 (558)
++.+|..+|.++...|++++|+.+|+++++++|+++.+|+++|.++.. +| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~--~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK--LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH--TTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHcCc
Confidence 456788888888888888888888888888888888888888888888 88 68888888888888776
No 140
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.07 E-value=1.3e-08 Score=93.21 Aligned_cols=275 Identities=17% Similarity=0.101 Sum_probs=199.3
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------CcchHHHHHH
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFS---NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPY------RVEDMDMYSN 311 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~ 311 (558)
.|.-++...++.+|+..+.+.+..-.+. ...+-.++.++..+|.|++++..--..+..... ..++...++.
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777888899998888887743322 224445678888899998887765444432221 1234445555
Q ss_pred HHHhcCCHhHHHHHHHHHhhcCCCCh-----hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccch
Q 048034 312 VLYAKECFSALSYLAHRVFTTDKYRP-----ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDY 386 (558)
Q Consensus 312 ~l~~~~~~~~a~~l~~~~~~~~~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 386 (558)
......++.+...+....+.....++ .....+|+.+...+.+++++++|++|++...++.+... ..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L---------El 162 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML---------EL 162 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee---------ee
Confidence 55566667777777666665544433 56778999999999999999999999998665444322 23
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN----D------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN---- 452 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~----~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~---- 452 (558)
.++..||..+-.+.++++|+.+..+|.++... + .-+++.++..+.. +|+..+|.++.+++.++.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~--~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRL--LGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHH--hcccccHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999876432 2 2356788999999 999999999999987763
Q ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHH-----HHHHHHHHhc
Q 048034 453 --DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFED-----AEVYCTRLLD 525 (558)
Q Consensus 453 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~ 525 (558)
+-....+.-+|.+|...|+.+.|..-|+.+...+...+ ..-....++...|+++....-..+ |++.-+++++
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g-drmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~le 319 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG-DRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLE 319 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 22345777899999999999999999999998765443 233446677777777765544444 8888888877
Q ss_pred cC
Q 048034 526 YT 527 (558)
Q Consensus 526 ~~ 527 (558)
+.
T Consensus 320 vA 321 (518)
T KOG1941|consen 320 VA 321 (518)
T ss_pred HH
Confidence 63
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=2.1e-08 Score=85.44 Aligned_cols=204 Identities=15% Similarity=0.070 Sum_probs=141.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
.-+.++|-+|..|-..|-+.-|.--|.+++.+.|.-++++.-| |..+...|+++.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyL-------------------------G~Yl~~a~~fda 117 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL-------------------------GIYLTQAGNFDA 117 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHH-------------------------HHHHHhcccchH
Confidence 3467899999999999999999999999999999999998776 999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH-HHHHHHhhc
Q 048034 254 ALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS-YLAHRVFTT 332 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~-~l~~~~~~~ 332 (558)
|.+.|+..++.+|....+..+.|..++.-|++.-|.+-+.+-.+.||+++--...+ .+--..-+..+|. .+.+++...
T Consensus 118 a~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL-Yl~E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL-YLNEQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred HHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHH-HHHHhhCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999876322111 1111122333333 344444444
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
+... ..|+..+..+ |+..+ ...++++..-..++...-.. -..+++.+|..|...|+.++|...|+-+
T Consensus 197 d~e~-WG~~iV~~yL---gkiS~-e~l~~~~~a~a~~n~~~Ae~--------LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 197 DKEQ-WGWNIVEFYL---GKISE-ETLMERLKADATDNTSLAEH--------LTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred cHhh-hhHHHHHHHH---hhccH-HHHHHHHHhhccchHHHHHH--------HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3322 2222222221 22111 12333433333332221111 2256777777777788888887777777
Q ss_pred HhcC
Q 048034 413 VFLQ 416 (558)
Q Consensus 413 ~~~~ 416 (558)
+..+
T Consensus 264 iann 267 (297)
T COG4785 264 VANN 267 (297)
T ss_pred HHHh
Confidence 7654
No 142
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.9e-09 Score=93.14 Aligned_cols=126 Identities=16% Similarity=0.022 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCch
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNH 234 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~ 234 (558)
..+.+.+...++..+..+|+|+..|.++|.+|..+|++..|...|.+++++.|+|++.+..+
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~------------------ 196 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL------------------ 196 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHH------------------
Confidence 44577888888888899999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHh---chHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcch
Q 048034 235 WMKDFFLASTYQELR---MHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVED 305 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 305 (558)
|.++.... ...++...+++++..+|.+..+...+|..++..|+|.+|+..++.+++..|.+..-
T Consensus 197 -------aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 197 -------AEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred -------HHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 55544433 35688899999999999999999999999999999999999999999998887543
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=5e-09 Score=85.58 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=90.2
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALN 460 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~ 460 (558)
.+++.+|..+...|++++|+..|.+++...|++ +.+++.+|.++.. .|++++|+..|++++...|++ +.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA--QGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 578999999999999999999999999998876 5788999999999 999999999999999998875 57899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 461 QLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 461 ~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
.+|.++...|++++|+.+++++++.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999999999999993
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.05 E-value=4.7e-09 Score=99.51 Aligned_cols=180 Identities=19% Similarity=0.176 Sum_probs=131.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
+.+...|+.|...|++++|..+|.++..........+. -...+...+.+|... ++++|+.+|++|+.+.-
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~---------Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFE---------AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHH---------HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHH---------HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH
Confidence 34555899999999999999999999876543222111 234667777777666 99999999999998632
Q ss_pred --CC----HHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 418 --ND----SRLWIAMAQCYETEQL-HMLEEAIKCYRRAANCND--SE----AIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 418 --~~----~~~~~~la~~~~~~~~-~~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
++ ...+..+|.+|.. . |++++|+.+|++|+.+.. +. ..++..+|.++.+.|+|++|+..|+++..
T Consensus 106 ~~G~~~~aA~~~~~lA~~ye~--~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELAEIYEE--QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HCT-HHHHHHHHHHHHHHHCC--TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22 4578899999998 8 999999999999998732 11 23788999999999999999999999987
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 048034 485 RMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 529 (558)
...+...........++..+.+++..|+...|...+++....+|.
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 432111111222345566788999999999999999999988763
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.04 E-value=7.1e-08 Score=91.46 Aligned_cols=203 Identities=14% Similarity=0.109 Sum_probs=130.6
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcC--CC----hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFG--FS----NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p--~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
|..|...|++++|...|.++....- ++ ...+...+.++... ++++|+.+|++++.+ +..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~--------------y~~ 106 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI--------------YRE 106 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH--------------HHh
Confidence 4555555555555555555544211 11 12333344454444 888999999888753 334
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc-CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK-GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQ 394 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~ 394 (558)
.|+...+. ..+..+|.+|... |++++|+.+|++|+.+......... ....+..+|.
T Consensus 107 ~G~~~~aA--------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~---------a~~~~~~~A~ 163 (282)
T PF14938_consen 107 AGRFSQAA--------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS---------AAECLLKAAD 163 (282)
T ss_dssp CT-HHHHH--------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH---------HHHHHHHHHH
T ss_pred cCcHHHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh---------HHHHHHHHHH
Confidence 45555554 4556699999999 9999999999999987543332111 2346778999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC------H-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHH
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPND------S-RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-----AIALNQL 462 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~------~-~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~l 462 (558)
++...|+|++|+..|++.....-++ . ..+...+.|+.. .|++..|...+++....+|.. ......+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~--~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA--MGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 9999999999999999988753221 1 345677889999 999999999999999888743 3355555
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHH
Q 048034 463 AKLHHA--LGRDEEAAFYYKKDLE 484 (558)
Q Consensus 463 a~~~~~--~g~~~~A~~~~~~al~ 484 (558)
...+.. ...+.+|+..|+...+
T Consensus 242 ~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHhCCHHHHHHHHHHHcccCc
Confidence 555543 3446677766665443
No 146
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=1.4e-07 Score=100.40 Aligned_cols=221 Identities=17% Similarity=0.129 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCCcchHHHHHHHHHhcCCHhHHHHHHHHHh
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRND-PYRVEDMDMYSNVLYAKECFSALSYLAHRVF 330 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~ 330 (558)
.+..+.|++.+..+|++...|...-..+.+.++.++|.+.+++++..- +...+
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee-------------------------- 1494 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE-------------------------- 1494 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH--------------------------
Confidence 345567778888888888888888888888888888888888888643 22111
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFR 410 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 410 (558)
..-.+|..+-++...-|.-+.-.+.|++|.+.... +.++..|..+|...+++++|.++|+
T Consensus 1495 ----EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~----------------~~V~~~L~~iy~k~ek~~~A~ell~ 1554 (1710)
T KOG1070|consen 1495 ----EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA----------------YTVHLKLLGIYEKSEKNDEADELLR 1554 (1710)
T ss_pred ----HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch----------------HHHHHHHHHHHHHhhcchhHHHHHH
Confidence 11235666666666667677777788888775422 2467778888888888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 048034 411 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 411 ~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 488 (558)
..++...+...+|..+|..++. .++-+.|...+.+|++.-|. +.......|.+-++.|+.+.+...|+..+.
T Consensus 1555 ~m~KKF~q~~~vW~~y~~fLl~--~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~---- 1628 (1710)
T KOG1070|consen 1555 LMLKKFGQTRKVWIMYADFLLR--QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS---- 1628 (1710)
T ss_pred HHHHHhcchhhHHHHHHHHHhc--ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh----
Confidence 8888777778888888888888 88888888888888888877 566777888888888888888888888887
Q ss_pred hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 489 EEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 489 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
..|...+.|.-+.+.-.+.|+.+.+...|++++.+.
T Consensus 1629 ---ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1629 ---AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ---hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 567778888888888888888888888888888764
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.03 E-value=4.2e-09 Score=81.89 Aligned_cols=95 Identities=32% Similarity=0.399 Sum_probs=91.4
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++.. .|++++|+.++++++...|.+..++..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK--LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHH
Q 048034 468 ALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 468 ~~g~~~~A~~~~~~al~ 484 (558)
..|++++|...+.++++
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999999887
No 148
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=4.4e-07 Score=86.59 Aligned_cols=144 Identities=11% Similarity=0.066 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCCC--------CcchHHHH
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELL-RNDPY--------RVEDMDMY 309 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p~--------~~~~~~~~ 309 (558)
.+....++...+...+......+..+..+++......+..+|..|++.+|.+.+...- ...|. .--.+..+
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 3445556677777777777777777777888899999999999999999998876542 22222 11233567
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhc---------C---------CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH
Q 048034 310 SNVLYAKECFSALSYLAHRVFTT---------D---------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 310 ~~~l~~~~~~~~a~~l~~~~~~~---------~---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
+.|.+.++.+.....++.++++. . ..+-++.++.|..|...|+.-.|.++|.++......++
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 77888888888888888887741 1 12457889999999999999999999999999999999
Q ss_pred HHHHHhchhcc
Q 048034 372 SAWTLMGHEYK 382 (558)
Q Consensus 372 ~~~~~~~~~~~ 382 (558)
..|..++.+.+
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998776
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.02 E-value=2.9e-08 Score=83.96 Aligned_cols=119 Identities=15% Similarity=0.046 Sum_probs=103.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHc
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHAL 469 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~ 469 (558)
....++...+...+++.+...|+. ..+...+|.++.. .|++++|+..|+.++...|+. +.+.+.+|.++...
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~--~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE--QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 335788889988999999999988 5667889999999 999999999999999987655 34888999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 470 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 470 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
|++++|+..++... ..+-.+.++..+|.++...|++++|+..|++++
T Consensus 99 ~~~d~Al~~L~~~~--------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQIP--------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999996632 345567788889999999999999999999875
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.00 E-value=3.1e-08 Score=83.80 Aligned_cols=97 Identities=12% Similarity=-0.003 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
.+.+.+|.++...|++++|+..|+.++...|+... ...+.+.++.++...|++++|+..++. +.-.+
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~ 115 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------KPLARLRLARILLQQGQYDEALATLQQ-IPDEA 115 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH------------HHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcc
Confidence 44555666666666666666666666665543221 123455666666666666666666644 22333
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048034 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 449 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al 449 (558)
..+.++..+|.++.. .|++++|+..|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~--~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLA--QGDYDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHH--CCCHHHHHHHHHHhC
Confidence 345556666666666 666666666666553
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.00 E-value=7.2e-09 Score=80.52 Aligned_cols=98 Identities=26% Similarity=0.291 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 501 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 501 (558)
++..+|.++.. .|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++. ..|....++.
T Consensus 2 ~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~ 72 (100)
T cd00189 2 ALLNLGNLYYK--LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE-------LDPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHH--HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCcchhHHH
Confidence 57889999999 99999999999999999999999999999999999999999999999998 5677778999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 502 FLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 502 ~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
.+|.++...|++++|..++.+++..+|
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 999999999999999999999998875
No 152
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=4.1e-07 Score=80.45 Aligned_cols=259 Identities=15% Similarity=0.094 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
+|-..-++-.|+|..++....+..... ........+++.|...|.+...+......- .....+...++..+..-+.
T Consensus 12 LF~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 12 LFNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcch
Confidence 344667778899999888777765543 667777888999999998766554433221 1222344444444444444
Q ss_pred HhHH-HHHHHHHhhcCC-CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 319 FSAL-SYLAHRVFTTDK-YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 319 ~~~a-~~l~~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
.+.. ..+.+.+..... .+......-|.+|...|++++|.+...+...+ .+.-.-.+++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------------E~~Al~VqI~ 147 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------------EAAALNVQIL 147 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------------HHHHHHHHHH
Confidence 3333 333333333333 33345556677888999999999887763222 2333445778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYET--EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
.++.+.+-|....+++.+++.+ ..+..||..+.. ...+++.+|.-+|+..-+..|..+..+...+.++..+|++++
T Consensus 148 lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHH
Confidence 8888999999999999887644 344455555543 114568899999999888788888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHH-HHHHHhccCCCc
Q 048034 475 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEV-YCTRLLDYTGPE 530 (558)
Q Consensus 475 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~ 530 (558)
|...++.++. .++.++..+.++-.+-...|.-.++.+ +..+....+|..
T Consensus 226 Ae~lL~eaL~-------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 226 AESLLEEALD-------KDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHh-------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999999998 678889999999888888888766655 445555555443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=1.9e-09 Score=81.65 Aligned_cols=81 Identities=28% Similarity=0.295 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 048034 399 MHMPFYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 476 (558)
Q Consensus 399 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 476 (558)
.|+++.|+.+|+++++..|. +...+..+|.|++. .|++++|+..+++ ...++.+....+.+|.++.++|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~--~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ--QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH--TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH--CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999999995 56678889999999 9999999999999 8888888888999999999999999999
Q ss_pred HHHHHH
Q 048034 477 FYYKKD 482 (558)
Q Consensus 477 ~~~~~a 482 (558)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=4.5e-08 Score=99.61 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=111.0
Q ss_pred chHHHHHHHHHHHhcCC---hHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH---
Q 048034 175 DPFILYLYGLVLKDKGS---ENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL--- 248 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 248 (558)
+++-+|+.|..+...++ ...|+.+|+++++.+|++..++-.++ .++...
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la-------------------------~~~~~~~~~ 392 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKA-------------------------LADIVRHSQ 392 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHH-------------------------HHHHHHHhc
Confidence 46678999999887665 78999999999999999999998873 222221
Q ss_pred -----hchHHHHHHHHHHHh--hcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhH
Q 048034 249 -----RMHNEALTKYEYLQG--TFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSA 321 (558)
Q Consensus 249 -----~~~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~ 321 (558)
.+...+.....+++. ..|.++.++..+|..+...|++++|...+++++.++|+
T Consensus 393 ~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-------------------- 452 (517)
T PRK10153 393 QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-------------------- 452 (517)
T ss_pred CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------
Confidence 234455566666555 36677788888888888899999999999999988874
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHH
Q 048034 322 LSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS 372 (558)
Q Consensus 322 a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (558)
..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 453 ---------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 453 ---------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 467888999999999999999999999999998764
No 155
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.95 E-value=3e-06 Score=78.21 Aligned_cols=222 Identities=25% Similarity=0.211 Sum_probs=142.2
Q ss_pred cHHHHHHHHHHHHHcCCCC--cchHHHHHHHHHhcCCHhHHHHHHHHHhh--cCCCChhHHHHHHHHHhhcCChHHHHHH
Q 048034 284 EFEQVEVVFEELLRNDPYR--VEDMDMYSNVLYAKECFSALSYLAHRVFT--TDKYRPESCCIIGNYYSLKGQHEKSVVY 359 (558)
Q Consensus 284 ~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~l~~~~~~~~a~~l~~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 359 (558)
.+..+...+...+...+.. .......+..+...+....+......... ..+.....+...|..+...+++..++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3333444444444433331 23333334444444444444444444443 4455566777777777777788888888
Q ss_pred HHHHHccCcCCHHHHHHhchhccccchHHHHHhHH-HHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhc
Q 048034 360 FRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQ-AYEMMHMPFYALHYFRKSVFLQP---NDSRLWIAMAQCYETEQL 435 (558)
Q Consensus 360 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~ 435 (558)
+..++...+.... .....+. ++...|+++.|...|.+++...| .........+..+.. .
T Consensus 118 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 180 (291)
T COG0457 118 LEKALALDPDPDL---------------AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA--L 180 (291)
T ss_pred HHHHHcCCCCcch---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH--h
Confidence 8888777666422 2223333 77778888888888888777665 344555556666666 7
Q ss_pred CCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHH
Q 048034 436 HMLEEAIKCYRRAANCNDS-EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFE 514 (558)
Q Consensus 436 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 514 (558)
++++.|+..+.+++...+. ....+..++..+...++++.|...+..++. ..+.....+..++..+...|.++
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE-------LDPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh-------hCcccHHHHhhHHHHHHHcCCHH
Confidence 7888888888888888777 577778888888888888888888888777 34444556666666666667788
Q ss_pred HHHHHHHHHhccCCC
Q 048034 515 DAEVYCTRLLDYTGP 529 (558)
Q Consensus 515 ~A~~~~~~al~~~~~ 529 (558)
++...+.+++...|.
T Consensus 254 ~~~~~~~~~~~~~~~ 268 (291)
T COG0457 254 EALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhCcc
Confidence 888888888877654
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.95 E-value=4.7e-09 Score=76.18 Aligned_cols=64 Identities=28% Similarity=0.355 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG-RDEEAAFYYKKDLE 484 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 484 (558)
++..|..+|.++.. .|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++
T Consensus 2 ~a~~~~~~g~~~~~--~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ--QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 67899999999999 999999999999999999999999999999999999 79999999999998
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.95 E-value=8.5e-06 Score=75.15 Aligned_cols=222 Identities=25% Similarity=0.207 Sum_probs=175.7
Q ss_pred HhchHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHcccHHHHHHHHHHHHH--cCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGF--SNYLQAQIAKAQYSLREFEQVEVVFEELLR--NDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
.+.+..+...+.......+. ........+..+...+++..+...+...+. ..+.........+......+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666665554 356666777777777777777777777776 56666666666777777777777777
Q ss_pred HHHHHHhhcCCCChhHHHHHHH-HHhhcCChHHHHHHHHHHHccCcC-CHHHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 324 YLAHRVFTTDKYRPESCCIIGN-YYSLKGQHEKSVVYFRRALKLNKN-YLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~-~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
..+.......+.........+. ++...|+++.|...|.+++...|. .. ........+..+...++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 182 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE-------------LAEALLALGALLEALGR 182 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-------------hHHHHHHhhhHHHHhcC
Confidence 7777777776666555666666 899999999999999999887663 11 12345566666888999
Q ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 402 PFYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 480 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 480 (558)
++.|+..+.+++...+. ....+..++.++.. .+++.+|+..+.+++...|.....+..++..+...+.++++...+.
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLK--LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHH--cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999 79999999999999 9999999999999999999877788888888888888999999999
Q ss_pred HHHH
Q 048034 481 KDLE 484 (558)
Q Consensus 481 ~al~ 484 (558)
+.+.
T Consensus 261 ~~~~ 264 (291)
T COG0457 261 KALE 264 (291)
T ss_pred HHHH
Confidence 9998
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.94 E-value=5.5e-08 Score=99.01 Aligned_cols=134 Identities=11% Similarity=-0.043 Sum_probs=112.4
Q ss_pred HHHhHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhc--CCCc
Q 048034 389 WYGLGQAYEMMHM---PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH--------MLEEAIKCYRRAANC--NDSE 455 (558)
Q Consensus 389 ~~~lg~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~--------~~~~A~~~~~~al~~--~~~~ 455 (558)
.+..|..|...+. ...|+.+|++|++++|+++.++..++.++.. .. +...+....++++.+ +|.+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~--~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIV--RHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--HHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 4455666655544 7799999999999999999999999888865 32 345666777776664 7777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 532 (558)
+.++..+|..+...|++++|...+++++. ..| +..+|..+|.++...|++++|.+.|++++.++|.++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~-------L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID-------LEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 88999999999999999999999999999 667 4789999999999999999999999999999987663
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=3.1e-09 Score=80.44 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=70.7
Q ss_pred cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCC
Q 048034 435 LHMLEEAIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNR 512 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 512 (558)
.|++++|+..|++++...|. +...++.+|.++.+.|++++|+.++++ .+ .++.+....+.+|.++.++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-------~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-------LDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-------HHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-------CCCCCHHHHHHHHHHHHHhCC
Confidence 79999999999999999995 566888899999999999999999999 44 346678888899999999999
Q ss_pred HHHHHHHHHHH
Q 048034 513 FEDAEVYCTRL 523 (558)
Q Consensus 513 ~~~A~~~~~~a 523 (558)
+++|++.++++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 160
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.8e-08 Score=94.61 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=114.1
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPND---------------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
...-|..|++.|+|..|...|++|+..-... ..++.+++.|+.+ +++|.+|+....++|.++|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK--l~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK--LKEYKEAIESCNKVLELDP 288 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh--hhhHHHHHHHHHHHHhcCC
Confidence 4456889999999999999999998754321 2468999999999 9999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccC
Q 048034 454 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDA-EVYCTRLLDYT 527 (558)
Q Consensus 454 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 527 (558)
++..+++..|.++..+|+++.|+..|+++++ ..|.+..+...+..+..+..++.+. .+.|.+++..-
T Consensus 289 ~N~KALyRrG~A~l~~~e~~~A~~df~ka~k-------~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 289 NNVKALYRRGQALLALGEYDLARDDFQKALK-------LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred CchhHHHHHHHHHHhhccHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999 7899999999999988887766544 78888888753
No 161
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=2.1e-06 Score=86.90 Aligned_cols=299 Identities=16% Similarity=0.153 Sum_probs=200.3
Q ss_pred HHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhc
Q 048034 186 LKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTF 265 (558)
Q Consensus 186 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 265 (558)
|...|+.+.|.+..+-. .+...|..+++.|.....++- +.+++-.=........++++.+.
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDV-------------AkVClGhm~~aRgaRAlR~a~q~- 798 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDV-------------AKVCLGHMKNARGARALRRAQQN- 798 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccH-------------HHHhhhhhhhhhhHHHHHHHHhC-
Confidence 45678999888766543 245789999888876666554 44443222233334556666553
Q ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 048034 266 GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGN 345 (558)
Q Consensus 266 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~ 345 (558)
|+ +.-...|.....+|-.++|..+|.+.-. ++.+-.+|...|.+.+|..+++.--.+ .-..+++..+.
T Consensus 799 ~~--e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE--EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAK 866 (1416)
T ss_pred Cc--chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHH
Confidence 22 2233457777889999999999999865 345667777889999999888762222 22357889999
Q ss_pred HHhhcCChHHHHHHHHHHH----------ccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 346 YYSLKGQHEKSVVYFRRAL----------KLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al----------~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
.+...++.+.|+++|+++- .-+|....-+... ..+...|.--|+.+...|+.+.|+.+|..|-..
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~-----~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR-----KRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh-----ccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 9999999999999999862 2334333333222 346677888899999999999999999988543
Q ss_pred C---------------------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCc-------------
Q 048034 416 Q---------------------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC------NDSE------------- 455 (558)
Q Consensus 416 ~---------------------p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~------~~~~------------- 455 (558)
. ..|..+.+.+|..|.. .|++.+|+..|.+|-.. ...+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn--~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN--DGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 2 2355677889999999 99999999999887432 1111
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHH------H------------HHHHhhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 048034 456 -AIALNQLAKLHHALG-RDEEAAFYYKKD------L------------ERMEAEEREGPNMVEALIFLATHCRAHNRFED 515 (558)
Q Consensus 456 -~~~~~~la~~~~~~g-~~~~A~~~~~~a------l------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 515 (558)
+.-....|..|...| +...|+..|.++ + +++.+.. ....++..+..-++.+....+|++
T Consensus 1020 ~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL-d~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL-DAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred CchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc-CCCCCHHHHHHHHHHHHhHHHHHH
Confidence 111223345555555 666666666543 2 2222221 223457777778899999999999
Q ss_pred HHHHHHHH
Q 048034 516 AEVYCTRL 523 (558)
Q Consensus 516 A~~~~~~a 523 (558)
|...+-.+
T Consensus 1099 AV~lL~~a 1106 (1416)
T KOG3617|consen 1099 AVNLLCLA 1106 (1416)
T ss_pred HHHHHHHH
Confidence 98766443
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=98.92 E-value=2.4e-08 Score=82.67 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=93.8
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
.....|..|.-++..|++++|...|+-....+|.+++.|..||.|+.. +++|++|+..|..+..++++++...+..|.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~--~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL--KKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 345678899999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~ 484 (558)
|+..+|+.+.|..+|+.+++
T Consensus 114 C~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999997
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.92 E-value=5.1e-09 Score=74.90 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=54.7
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 456 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 456 (558)
+.+|..+...|++++|+..|+++++..|+++.+|..+|.++.. +|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ--QGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCCC
Confidence 3578888888889999999999988888888888899999888 8999999988888888888764
No 164
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=1.9e-07 Score=79.68 Aligned_cols=210 Identities=14% Similarity=0.066 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
|-+|..|-..|-..-|.-.|.+++.+.|+-+.+...+|..+...|+|+.|.+.|+.++++||...-+....+..++.-|+
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 148 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCc
Confidence 33588888899999999999999999999999999999999999999999999999999999988888777777888888
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHH-HHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVV-YFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
+.-|..-+.+.-+.+|.+|---..+-.. ...-+..+|.. ..+++.+.+... +.|+..+.
T Consensus 149 ~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~----------------WG~~iV~~--- 208 (297)
T COG4785 149 YKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQ----------------WGWNIVEF--- 208 (297)
T ss_pred hHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhh----------------hhHHHHHH---
Confidence 8888888888888888877432222111 12234445543 334555444331 12222221
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPND-------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE----AIALNQLAKLH 466 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~ 466 (558)
.+|+..+ ...++++..-..++ .+.++.+|..+.. .|+.++|...|+-++..+--+ ..+++.++.+.
T Consensus 209 yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~--~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~ 285 (297)
T COG4785 209 YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLS--LGDLDEATALFKLAVANNVYNFVEHRYALLELSLLG 285 (297)
T ss_pred HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 1222211 12333333333332 3567888888888 888888888888887654322 22555555555
Q ss_pred HHcCC
Q 048034 467 HALGR 471 (558)
Q Consensus 467 ~~~g~ 471 (558)
....+
T Consensus 286 q~~~~ 290 (297)
T COG4785 286 QDQDD 290 (297)
T ss_pred cccch
Confidence 44433
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.91 E-value=1.7e-07 Score=90.47 Aligned_cols=171 Identities=12% Similarity=0.037 Sum_probs=131.3
Q ss_pred HHHHHHHhhcC---ChHHHHHHHHHHH---ccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 341 CIIGNYYSLKG---QHEKSVVYFRRAL---KLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 341 ~~lg~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
+..|......+ ..+.|+.+|.+|+ .++|.+..++..++.++. ....+|..- ......+|....++|++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~-----~~~~~g~~~-~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHM-----SLALHGKSE-LELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHH-----HHHHhcCCC-chHHHHHHHHHHHHHHh
Confidence 55666655444 3567899999999 999998887666552211 000111111 33456688999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
++|.|+.++..+|.+... .++++.|...|++|+.++|+.+.+++..|.+....|+.++|...++++++ .+|
T Consensus 333 ld~~Da~a~~~~g~~~~~--~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-------LsP 403 (458)
T PRK11906 333 ITTVDGKILAIMGLITGL--SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ-------LEP 403 (458)
T ss_pred cCCCCHHHHHHHHHHHHh--hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cCc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999 667
Q ss_pred ChHHHHHHHHHH-HHHcCCHHHHHHHHHHHhcc
Q 048034 495 NMVEALIFLATH-CRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 495 ~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~ 526 (558)
....+-...-.+ .+-....++|+..|-+-.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 404 RRRKAVVIKECVDMYVPNPLKNNIKLYYKETES 436 (458)
T ss_pred hhhHHHHHHHHHHHHcCCchhhhHHHHhhcccc
Confidence 655544332222 33455688999988776554
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.5e-08 Score=93.76 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=115.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcC----CHH-HHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKN----YLS-AWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
.....|+.|++.|+|..|...|++|+..-.. +.. ...... .-..++.+++.++.++++|..|+....+++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~-----~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEA-----LKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH-----HHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3445799999999999999999998875321 111 000000 012368899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA-AFYYKKDLERM 486 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 486 (558)
.++|+|..+++..|.++.. +|+++.|+..|++++++.|.|-.+...+..+-.+...+.+. .+.|.++....
T Consensus 285 e~~~~N~KALyRrG~A~l~--~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLA--LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred hcCCCchhHHHHHHHHHHh--hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999 99999999999999999999999999999998887776655 77888877743
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.90 E-value=1.2e-07 Score=91.54 Aligned_cols=174 Identities=9% Similarity=-0.016 Sum_probs=135.9
Q ss_pred chH--HHHHHHHHHHhcCC---hHHHHHHHHHHh---hhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHH
Q 048034 175 DPF--ILYLYGLVLKDKGS---ENLARTVLVESV---NSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQ 246 (558)
Q Consensus 175 ~~~--~~~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 246 (558)
+++ -+|++|......+. .+.|..+|.+++ ..+|....++..++.|.. ...+.|..-
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~---------------~~~~~g~~~- 315 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHM---------------SLALHGKSE- 315 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHH---------------HHHHhcCCC-
Confidence 555 67999999877665 468899999999 999999999988854431 111112111
Q ss_pred HHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 048034 247 ELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLA 326 (558)
Q Consensus 247 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~ 326 (558)
......+|....+++++++|.++.++..+|.++...++++.|...|++++.++|+...++...+.++...|+.+++...+
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999888888888888888888888888
Q ss_pred HHHhhcCCCChhHHHHHHHH-HhhcCChHHHHHHHHHHH
Q 048034 327 HRVFTTDKYRPESCCIIGNY-YSLKGQHEKSVVYFRRAL 364 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al 364 (558)
+++++.+|....+-...-.+ .+.....+.|+..|-+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 88888888876655444444 445566677777766543
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.90 E-value=7.3e-07 Score=79.35 Aligned_cols=196 Identities=16% Similarity=0.080 Sum_probs=147.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
..+..+|..|....+.|++++|+..|+.+...+|..+-+-..+ +.++.++.+.++++.
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~----------------------l~l~yA~Yk~~~y~~ 89 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQ----------------------LDLAYAYYKNGEYDL 89 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHH----------------------HHHHHHHHhcccHHH
Confidence 3567899999999999999999999999999999776553332 345899999999999
Q ss_pred HHHHHHHHHhhcCCCh---HHHHHHHHHHHHcc--------cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHH
Q 048034 254 ALTKYEYLQGTFGFSN---YLQAQIAKAQYSLR--------EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSAL 322 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a 322 (558)
|+..+++-+..+|.++ .+++..|.+++..- -..+|+..|+.++...|+..-+-+....+-+....
T Consensus 90 A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~---- 165 (254)
T COG4105 90 ALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA---- 165 (254)
T ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH----
Confidence 9999999999888765 46777888876532 25678888999999999876544433322211111
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCH
Q 048034 323 SYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402 (558)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 402 (558)
-+.--..+|..|...|.+..|+..++.+++..|+... ...++..+..+|..+|..
T Consensus 166 -------------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~------------~~eaL~~l~eaY~~lgl~ 220 (254)
T COG4105 166 -------------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA------------VREALARLEEAYYALGLT 220 (254)
T ss_pred -------------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc------------hHHHHHHHHHHHHHhCCh
Confidence 1233456899999999999999999999988776543 345777888999999999
Q ss_pred HHHHHHHHHHHhcCCCCH
Q 048034 403 FYALHYFRKSVFLQPNDS 420 (558)
Q Consensus 403 ~~A~~~~~~a~~~~p~~~ 420 (558)
++|...-.-.-...|+++
T Consensus 221 ~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 221 DEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhcCCCCc
Confidence 988776554444445543
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=98.89 E-value=3.3e-08 Score=81.86 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=94.6
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFR 410 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 410 (558)
.+.+..-+..+..|.-++..|++++|...|+-....+|.+ ++.|.+||-++..+++|++|+..|.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---------------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---------------PDYTMGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778889999999999999999999999988884 4578999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 048034 411 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 411 ~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~ 455 (558)
.+..+++++++..+..|.|+.. +|+.+.|+.+|+.++. .|.+
T Consensus 96 ~A~~l~~~dp~p~f~agqC~l~--l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 96 VAFTLLKNDYRPVFFTGQCQLL--MRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHcccCCCCccchHHHHHHH--hCCHHHHHHHHHHHHh-Ccch
Confidence 9999999999999999999999 9999999999999998 3443
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.87 E-value=1.2e-07 Score=75.75 Aligned_cols=96 Identities=24% Similarity=0.206 Sum_probs=77.5
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS---EAIALN 460 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~ 460 (558)
.+++.+|.++...|+.++|+.+|++++...... ..++..+|.++.. +|++++|+..+++++...|+ +..+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~--LG~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN--LGRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 467888888888888888888888888865443 4678888888888 88888888888888887777 666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 461 QLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 461 ~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.++.++...|+.++|+..+-.++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888888877665
No 171
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=3.5e-06 Score=74.67 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 048034 270 YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL 349 (558)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~ 349 (558)
.....-|.++.+.|++++|+........ .++...-..++.+
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~---------------------------------------lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN---------------------------------------LEAAALNVQILLK 149 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch---------------------------------------HHHHHHHHHHHHH
Confidence 4555567788888888888887766322 2344445677788
Q ss_pred cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048034 350 KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQC 429 (558)
Q Consensus 350 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 429 (558)
..+++-|....+++.+++.+.. .+.++ .+|..++. ..+++.+|..+|+..-+..|..+...+..+.|
T Consensus 150 ~~r~d~A~~~lk~mq~ided~t--LtQLA--------~awv~la~---ggek~qdAfyifeE~s~k~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDAT--LTQLA--------QAWVKLAT---GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHH--HHHHH--------HHHHHHhc---cchhhhhHHHHHHHHhcccCCChHHHccHHHH
Confidence 8899999999999988876522 11111 33443332 23468899999999999888899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 430 YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 430 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
... +|+|++|...++.++..+++++.++.++..+-...|...++..-+-.-+.
T Consensus 217 ~l~--~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 217 HLQ--LGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHH--hcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999998887765544444
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.84 E-value=1e-07 Score=92.64 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=110.9
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 048034 342 IIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 342 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
.+-.++...++++.|+..|++..+.+|. +...++.++...++..+|+..+.+++...|.+..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~ 235 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE 235 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 3455666778999999999999998876 4567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 482 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 482 (558)
.+...+..+.. .++++.|+.+.++++...|.+-..|+.|+.+|...|++++|+..++.+
T Consensus 236 LL~~Qa~fLl~--k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLS--KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999 999999999999999999999999999999999999999999887653
No 173
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.84 E-value=4.6e-05 Score=71.30 Aligned_cols=263 Identities=14% Similarity=0.041 Sum_probs=202.6
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHH-HHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWN-SWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
...|.++.+-+....-.|+++.|.+-|+.++. +|..-. .+..| -..-...|..
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgL-------------------------yleAqr~Gar 170 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGL-------------------------YLEAQRLGAR 170 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHH-------------------------HHHHHhcccH
Confidence 45688999999999999999999999998876 332111 11111 1123468899
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCCcc---hHHHHHHHHH-hcCCHhHHHH
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN---DPYRVE---DMDMYSNVLY-AKECFSALSY 324 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~---~~~~~~~~l~-~~~~~~~a~~ 324 (558)
+.|..+-+.+-...|.-++.+...-...+..|+++.|+++.+..... .++..+ +...-+.... ..-+...+..
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99999999999999999999988888899999999999999877653 222111 1111112211 2256778889
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHH
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFY 404 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 404 (558)
...++.++.|+-.-.-..-+..++..|+..++-..++.+.+..|.- .++..|....--+.
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--------------------~ia~lY~~ar~gdt 310 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--------------------DIALLYVRARSGDT 310 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--------------------HHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999861 23344444444445
Q ss_pred HHHHHHH---HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 048034 405 ALHYFRK---SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL-GRDEEAAFYYK 480 (558)
Q Consensus 405 A~~~~~~---a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 480 (558)
++.-+++ ...+.|++.......+..-.. .|++..|..--+.+....|.. .++..++.+-... |+-.++...+-
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAld--a~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALD--AGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHh--ccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHH
Confidence 5555544 456789999999999999999 999999999999999999874 4567788887765 99999999999
Q ss_pred HHHH
Q 048034 481 KDLE 484 (558)
Q Consensus 481 ~al~ 484 (558)
++++
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 9987
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.84 E-value=1.2e-07 Score=87.77 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHHHHHH-HHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 048034 270 YLQAQIAKAQ-YSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYS 348 (558)
Q Consensus 270 ~~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~ 348 (558)
...+..|..+ ...|+|++|+..|+..++..|+.. ..+.+++.+|.+|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-------------------------------~a~~A~y~LG~~y~ 191 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-------------------------------YQPNANYWLGQLNY 191 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------------------------------chHHHHHHHHHHHH
Confidence 4444555544 445667777777777766666542 22456666777777
Q ss_pred hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 048034 349 LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
..|++++|+..|+++++..|++.. .+.+++.+|.++..+|++++|..+|+++++..|+...
T Consensus 192 ~~g~~~~A~~~f~~vv~~yP~s~~------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNYPKSPK------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcc------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777777777777777766666432 3456666677777777777777777777776666553
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.83 E-value=1e-07 Score=76.13 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
|.+++.+|.++-..|+.++|+.+|++++........ ..+++..+|.++..+|++++|+..+++++...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~------------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD------------RRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357889999999999999999999999997655332 34688999999999999999999999999998
Q ss_pred CC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 417 PN---DSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 417 p~---~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
|+ +..+...++.++.. .|+.++|+..+-.++.
T Consensus 69 p~~~~~~~l~~f~Al~L~~--~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYN--LGRPKEALEWLLEALA 103 (120)
T ss_pred CCccccHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 88 78888889999999 9999999999988775
No 176
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=2.5e-06 Score=91.30 Aligned_cols=236 Identities=11% Similarity=-0.042 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHh-hcCCCh-
Q 048034 192 ENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQG-TFGFSN- 269 (558)
Q Consensus 192 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~- 269 (558)
-.+..+-|.+.+..+|+..-.|... -..+++.++.++|.+..++++. +++...
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~Y-------------------------Maf~LelsEiekAR~iaerAL~tIN~REee 1494 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRY-------------------------MAFHLELSEIEKARKIAERALKTINFREEE 1494 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHH-------------------------HHHHhhhhhhHHHHHHHHHHhhhCCcchhH
Confidence 3445677888888888888888775 5567889999999999999998 444432
Q ss_pred ---HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 048034 270 ---YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNY 346 (558)
Q Consensus 270 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~ 346 (558)
.+|..+-.....-|.-+...+.|+++.+.. +....+..+..+|...++.++|.++++..++.......+|...|..
T Consensus 1495 EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 255555555555677777888999998754 2345677788899999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048034 347 YSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAM 426 (558)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 426 (558)
++.+++-+.|...+.+|++--|.. .+......-+++-++.|+.+.+...|+-.+...|.....|..+
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~-------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQ-------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchh-------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH
Confidence 999999999999999999999882 2445666788999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Q 048034 427 AQCYETEQLHMLEEAIKCYRRAANCN--DSEAIALNQLAKLHHA 468 (558)
Q Consensus 427 a~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~ 468 (558)
...-.+ .|..+.+...|++++.+. +.....++..=.-|.+
T Consensus 1641 id~eik--~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1641 IDMEIK--HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHc--cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 999999 999999999999998875 4444444444444443
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.83 E-value=1.2e-07 Score=87.71 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=68.8
Q ss_pred HHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 420 SRLWIAMAQCY-ETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 420 ~~~~~~la~~~-~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
...++..|..+ .. .|+|++|+..|++.+...|++ +.+++.+|.+|...|++++|+..|+++++.++ .++.
T Consensus 142 e~~~Y~~A~~l~~~--~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP----~s~~ 215 (263)
T PRK10803 142 ANTDYNAAIALVQD--KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP----KSPK 215 (263)
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----CCcc
Confidence 34455555544 44 567777777777777777665 35677777777777777777777777776432 3455
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 048034 496 MVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 496 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
.+.+++.+|.++...|++++|...|+++++..|..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 66677777777777777777777777777665443
No 178
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.83 E-value=4.3e-09 Score=95.61 Aligned_cols=234 Identities=12% Similarity=-0.013 Sum_probs=171.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
+--.|+-|+++|+|++|+++|.+++..+|.|+-.+... +.+|++...+..|...+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NR-------------------------A~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINR-------------------------ALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhH-------------------------HHHHHHHHHHHHHHHhH
Confidence 45578999999999999999999999999988777654 99999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhc-CCCC-
Q 048034 259 EYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTT-DKYR- 336 (558)
Q Consensus 259 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~-~~~~- 336 (558)
..++.++.....++...+.+-..+|...+|.+-++.++++.|.+.+....++.+-.- .+. .++.+.... -|-.
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl----~E~-~I~~KsT~G~~~A~Q 229 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL----RER-KIATKSTPGFTPARQ 229 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch----Hhh-hHHhhcCCCCCcccc
Confidence 999999888888999999999999999999999999999999987766555544221 111 111111100 0000
Q ss_pred ----hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 337 ----PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 337 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
....-.-|..++..|.++.++.++-+-+..+..+.. .-.+ +..|.+..+++.++.-..++
T Consensus 230 ~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~---------------L~~~-~~~~~KI~~~~~~~~~~~~~ 293 (536)
T KOG4648|consen 230 GMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQ---------------LRIS-DEDIDKIFNSNCGIIEEVKK 293 (536)
T ss_pred chhhhccccCcchhhhhhhccccceeEeeccccccCcccc---------------Cccc-HHHHHHHhhcchhHHHHHHh
Confidence 001123477788888888888888776655433221 1111 55667777888898888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 048034 413 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALN 460 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 460 (558)
+..+|.........+.+-.- .|...++...++.++.+.|.+.....
T Consensus 294 ~~~~~s~~~~~s~~~~A~T~--~~~~~E~K~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 294 TNPKPTPMPDTSGPPKAETI--AKTSKEVKPTKQTAVKVAPAVETPKE 339 (536)
T ss_pred cCCCCCcCcccCCCchhHHH--HhhhhhcCcchhheeeeccccccchh
Confidence 88877766555556666666 78888888889998888876644333
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.82 E-value=1.6e-08 Score=72.31 Aligned_cols=65 Identities=20% Similarity=0.173 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHH
Q 048034 180 YLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYE 259 (558)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 259 (558)
|.+|..+...|++++|+..|++++..+|.+..+|..+ |.++...|++++|+..|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~l-------------------------g~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLL-------------------------GRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHH-------------------------HHHHHHTT-HHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH-------------------------HHHHHHcCCHHHHHHHHH
Confidence 5689999999999999999999999999999999988 999999999999999999
Q ss_pred HHHhhcCCCh
Q 048034 260 YLQGTFGFSN 269 (558)
Q Consensus 260 ~~~~~~p~~~ 269 (558)
++++..|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 9999999875
No 180
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.76 E-value=4.6e-05 Score=78.63 Aligned_cols=284 Identities=14% Similarity=0.087 Sum_probs=191.8
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCch
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNH 234 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~ 234 (558)
..++..+.+.+.++.+..|+.+.+..+.|..+.++|+.++|..+++..-...+.+......+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l------------------ 83 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL------------------ 83 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH------------------
Confidence 45678888999999999999999999999999999999999977776666666655555554
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
-.+|.++++.++|..+|+++...+|. .+..+.+-.+|.+.+.|.+-.+.--++.+..|.++........+..
T Consensus 84 -------~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 84 -------QNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred -------HHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 88999999999999999999999998 8888888899999999888777777777788888765555444444
Q ss_pred hc-CCHh---------HHHHHHHHHhhcC-CCChhH-HHHHHHHHhhcCChHHHHHHHHHHH-ccCcCCHHHHHHhchhc
Q 048034 315 AK-ECFS---------ALSYLAHRVFTTD-KYRPES-CCIIGNYYSLKGQHEKSVVYFRRAL-KLNKNYLSAWTLMGHEY 381 (558)
Q Consensus 315 ~~-~~~~---------~a~~l~~~~~~~~-~~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~ 381 (558)
+. ...+ -|...++..+... +..... ....-.+....|++++|.+.+..-+ ...+...
T Consensus 156 qs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~---------- 225 (932)
T KOG2053|consen 156 QSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSAN---------- 225 (932)
T ss_pred HhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccc----------
Confidence 33 2221 2333444445444 222111 1223345567899999999984332 3333221
Q ss_pred cccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-------------HHHHHHHHhcCCHHHHHHHHHHH
Q 048034 382 KSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIA-------------MAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 382 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-------------la~~~~~~~~~~~~~A~~~~~~a 448 (558)
...-...+..+...++|.+-.+...+++...+++...+.. .+..+.. .+..+..++..++.
T Consensus 226 ----~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~--~~~l~~~~ek~~~~ 299 (932)
T KOG2053|consen 226 ----LYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSL--SKSLDECIEKAQKN 299 (932)
T ss_pred ----hHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhh--hhhHHHHHHHHHHh
Confidence 2233455677788889999989889999888887222111 1111222 34455555555665
Q ss_pred HhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 048034 449 ANCNDSEAI-ALNQLAKLHHALGRDEEAAFYYK 480 (558)
Q Consensus 449 l~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~ 480 (558)
+......+. ++..+-.-+...|+.+++...|-
T Consensus 300 i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 300 IGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred hcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 555334443 44455444556788888765543
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=5.2e-07 Score=87.79 Aligned_cols=124 Identities=21% Similarity=0.113 Sum_probs=112.2
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 470 (558)
.|-..+...++++.|+..|++..+.+|+ +...++.++.. .++-.+|++.+.+++...|.+...+...+..+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~--~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLL--MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh--cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 4455666778999999999999888765 66779999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 471 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
+++.|+.+.+++++ ..|.....|+.||.+|...|+++.|+..++.+--.
T Consensus 249 ~~~lAL~iAk~av~-------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE-------LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999 78999999999999999999999999888866543
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.71 E-value=6.8e-06 Score=73.27 Aligned_cols=198 Identities=19% Similarity=0.173 Sum_probs=140.3
Q ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 048034 268 SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYY 347 (558)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~ 347 (558)
.+..++..|...++.|++++|+..|+.+....|..+ ....+...++..+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~-------------------------------~~~qa~l~l~yA~ 81 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP-------------------------------YSEQAQLDLAYAY 81 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-------------------------------ccHHHHHHHHHHH
Confidence 466788889999999999999999999998888753 3467888899999
Q ss_pred hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcC--------CHHHHHHHHHHHHhcCCCC
Q 048034 348 SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMH--------MPFYALHYFRKSVFLQPND 419 (558)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~a~~~~p~~ 419 (558)
++.++++.|+...++-+.+.|+++.+ .-+++..|.+++..= -..+|+..|+..+...|++
T Consensus 82 Yk~~~y~~A~~~~drFi~lyP~~~n~------------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 82 YKNGEYDLALAYIDRFIRLYPTHPNA------------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HhcccHHHHHHHHHHHHHhCCCCCCh------------hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999987653 335666777654321 2335777777788888876
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHH
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 499 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 499 (558)
.-+--....+-.- ..++ ..--..+|..|.+.|.+..|+..++.+++..+ ..+....+
T Consensus 150 ~Ya~dA~~~i~~~------~d~L-------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~----~t~~~~ea 206 (254)
T COG4105 150 RYAPDAKARIVKL------NDAL-------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYP----DTSAVREA 206 (254)
T ss_pred cchhhHHHHHHHH------HHHH-------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccc----cccchHHH
Confidence 4332221111111 1111 11224577888888899889888888888543 34555678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHH
Q 048034 500 LIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 500 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 532 (558)
+..+...|..+|-.++|...- +++..+.++.+
T Consensus 207 L~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s~ 238 (254)
T COG4105 207 LARLEEAYYALGLTDEAKKTA-KVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHhCChHHHHHHH-HHHHhcCCCCc
Confidence 888888888888888887654 45555666554
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.00011 Score=76.03 Aligned_cols=227 Identities=13% Similarity=0.018 Sum_probs=172.5
Q ss_pred HhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcC
Q 048034 187 KDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFG 266 (558)
Q Consensus 187 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p 266 (558)
...+++.+|..-..+.++..|+..-+... .|..+.++|+.++|..+++..-...+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vL-------------------------kaLsl~r~gk~~ea~~~Le~~~~~~~ 74 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVL-------------------------KALSLFRLGKGDEALKLLEALYGLKG 74 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHH-------------------------HHHHHHHhcCchhHHHHHhhhccCCC
Confidence 34678899999999999999977665543 38899999999999988888777788
Q ss_pred CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHH-HHHH
Q 048034 267 FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCC-IIGN 345 (558)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~-~lg~ 345 (558)
++...+-.+-.+|..++++++|..+|++++..+|. .+.+..+-.++.+-+.+.+-....-+..+..|.++..+. .+..
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 88888888999999999999999999999999999 888888888899989998888888888888888876544 4444
Q ss_pred HHhhcCChH---------HHHHHHHHHHccC-cCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH--HH
Q 048034 346 YYSLKGQHE---------KSVVYFRRALKLN-KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK--SV 413 (558)
Q Consensus 346 ~~~~~~~~~---------~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~--a~ 413 (558)
+.......+ -|...+++.++.. +-... .++. ..-.++..+|++++|...+.. +-
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~-------------aE~~-Lyl~iL~~~~k~~eal~~l~~~la~ 219 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE-------------AEII-LYLLILELQGKYQEALEFLAITLAE 219 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchH-------------HHHH-HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 443333332 3455566666655 22111 1111 222456788999999999943 33
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~ 455 (558)
...+.+...-+.....+.. .+++.+-.+...+++..++++
T Consensus 220 ~l~~~~~~l~~~~~dllk~--l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 220 KLTSANLYLENKKLDLLKL--LNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hccccchHHHHHHHHHHHH--hcChHHHHHHHHHHHHhCCcc
Confidence 3445555555666777778 999999999999999999887
No 184
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.66 E-value=1.1e-06 Score=85.62 Aligned_cols=97 Identities=21% Similarity=0.117 Sum_probs=84.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAI-ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRF 513 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 513 (558)
.|+...|++|+..|+...|.... .+.++|.++.+.|-..+|-..+.+++.+ ....+..++.+|+.+..+.+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-------~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-------NSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-------cccCchHHHhcchhHHHHhhh
Confidence 89999999999999999886554 6789999999999999999999999984 355577888999999999999
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHH
Q 048034 514 EDAEVYCTRLLDYTGPEKETAKSML 538 (558)
Q Consensus 514 ~~A~~~~~~al~~~~~~~~~~~~ll 538 (558)
+.|++.|+.+++++|.+.+.-..++
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHH
Confidence 9999999999999988776554443
No 185
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1.6e-05 Score=80.92 Aligned_cols=288 Identities=19% Similarity=0.161 Sum_probs=172.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
-...+.....+|..++|..+|++.-+.+ | +-..|...|.+++|+++-
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------L------------------------lNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------L------------------------LNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------H------------------------HHHHHHhcccHHHHHHHH
Confidence 3445566677888888988888875421 1 255677788888888776
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChh
Q 048034 259 EYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPE 338 (558)
Q Consensus 259 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~ 338 (558)
+.--.++- ...+++.|..+...+|.+.|+++|+++-. ...+....+ .+.......+.++ ..++.
T Consensus 850 E~~DRiHL--r~Tyy~yA~~Lear~Di~~AleyyEK~~~---hafev~rmL------~e~p~~~e~Yv~~-----~~d~~ 913 (1416)
T KOG3617|consen 850 ETKDRIHL--RNTYYNYAKYLEARRDIEAALEYYEKAGV---HAFEVFRML------KEYPKQIEQYVRR-----KRDES 913 (1416)
T ss_pred hhccceeh--hhhHHHHHHHHHhhccHHHHHHHHHhcCC---hHHHHHHHH------HhChHHHHHHHHh-----ccchH
Confidence 55333322 23566778888888888888888887521 111111110 1111122222221 22346
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc------------ccchHHHHHhHHHHHHcCCHHHHH
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK------------SIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
.|..-|.+....|+.+.|+.+|..|-....- ...+++. ..+..+.|.||..|...|+..+|+
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~------VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKDYFSM------VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhhhhh------eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHH
Confidence 6677777788888888888887776432100 0000111 345667888889999999999998
Q ss_pred HHHHHHHhc------CCCC---HHH-----------HHHHHHHHHHHhcC-CHHHHHHHHHHH------H----------
Q 048034 407 HYFRKSVFL------QPND---SRL-----------WIAMAQCYETEQLH-MLEEAIKCYRRA------A---------- 449 (558)
Q Consensus 407 ~~~~~a~~~------~p~~---~~~-----------~~~la~~~~~~~~~-~~~~A~~~~~~a------l---------- 449 (558)
.+|.+|... ...+ .+. ....+..|.. .| ....|...|.+| +
T Consensus 988 ~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe--~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 988 KFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE--LGGYAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH--cchhhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 888776432 2111 111 1122333433 44 555555555443 1
Q ss_pred -------hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHhhh---------------hcC---CChH
Q 048034 450 -------NCN-DSEAIALNQLAKLHHALGRDEEAAFYYK------KDLERMEAEE---------------REG---PNMV 497 (558)
Q Consensus 450 -------~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~~---------------~~~---~~~~ 497 (558)
.++ ..++..+..-+..+....+|++|+..+- .++.++...+ ... ....
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHH
Confidence 122 2467788888999999999999988754 4444443211 011 1234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 498 EALIFLATHCRAHNRFEDAEVYCTRL 523 (558)
Q Consensus 498 ~~~~~la~~~~~~g~~~~A~~~~~~a 523 (558)
.++..+|.++.++|.|..|-+-|.++
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhh
Confidence 57778999999999999999888875
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.65 E-value=9.8e-08 Score=68.93 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=60.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
...|++++|+..|++++..+|++..++..+|.+|.. .|++++|...+++++..+|+++.++..++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK--QGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH--TT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 578999999999999999999999999999999999 9999999999999999999988887777654
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.64 E-value=5.8e-08 Score=72.33 Aligned_cols=73 Identities=32% Similarity=0.402 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 454 SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 454 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
+...++.++|.+|..+|++++|+.+|+++++.....+...+....++.++|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456899999999999999999999999999854444344556788999999999999999999999999875
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.64 E-value=6.1e-06 Score=68.98 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=127.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh-cCCCCHH
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF-LQPNDSR 421 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~-~~p~~~~ 421 (558)
++......=+.+....-..+.+...|... -.+.||......|++.+|...|++++. +..+++.
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq----------------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a 125 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQ----------------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA 125 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHH----------------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH
Confidence 34444455566666666666677777643 367899999999999999999999985 6778999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 499 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 499 (558)
++..++...+. .+++..|...+++..+.+|. .+.....+|..+...|++.+|...|+.++.. .| .+.+
T Consensus 126 ~lLglA~Aqfa--~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-------yp-g~~a 195 (251)
T COG4700 126 MLLGLAQAQFA--IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY-------YP-GPQA 195 (251)
T ss_pred HHHHHHHHHHh--hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh-------CC-CHHH
Confidence 99999999999 99999999999999998874 4667888999999999999999999999983 33 4778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 500 LIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 500 ~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
....+..+.++|+.++|..-+..+.
T Consensus 196 r~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 196 RIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8889999999998888776655443
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.64 E-value=2e-07 Score=68.38 Aligned_cols=70 Identities=29% Similarity=0.342 Sum_probs=63.6
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
|..+|...+++++|+.++++++.++|+++..|..+|.++.. .|++.+|+..|+++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~--~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ--LGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH--hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45788999999999999999999999999999999999999 99999999999999999998887665544
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.62 E-value=0.00033 Score=65.74 Aligned_cols=276 Identities=14% Similarity=-0.001 Sum_probs=197.5
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGF--SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF 319 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 319 (558)
|.+-.--|+-..|.+.-.+.-..-.. .+.++..-++.-.-.|+++.|.+-|+.++..-....-.+..+-.--...|+.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccH
Confidence 66666778888888877776653322 3456667788889999999999999998863333333333333334456999
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHcc---CcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL---NKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
+.+..+..++....|.-+-++...-......|+++.|++..+..... .++-.+ ..++-..-+...
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae------------R~rAvLLtAkA~ 238 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE------------RSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH------------HHHHHHHHHHHH
Confidence 99999999999999999999988888899999999999998866542 233221 111111112221
Q ss_pred -HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 397 -EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 397 -~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
...-+...|...-.++.++.|+....-..-+..++. .|+..++-..++.+.+..|. +. ++.+|....--+.+
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~--d~~~rKg~~ilE~aWK~ePH-P~----ia~lY~~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFR--DGNLRKGSKILETAWKAEPH-PD----IALLYVRARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh--ccchhhhhhHHHHHHhcCCC-hH----HHHHHHHhcCCCcH
Confidence 223467888999999999999999888889999999 99999999999999998875 32 34445444444455
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMR 542 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~ 542 (558)
+.-++++-.+. ...|++.+..+..+..-+.-|++..|..-.+.+....|... +..++..+.
T Consensus 312 ~dRlkRa~~L~----slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres--~~lLlAdIe 372 (531)
T COG3898 312 LDRLKRAKKLE----SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES--AYLLLADIE 372 (531)
T ss_pred HHHHHHHHHHH----hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh--HHHHHHHHH
Confidence 55555554432 26788888888899999999999999988888888765433 333444444
No 191
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=7.4e-07 Score=75.18 Aligned_cols=108 Identities=25% Similarity=0.131 Sum_probs=95.0
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS-----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
.-.-|.-++..|+|++|..-|..|+.+.|..+ ..+.+.|.+..+ ++.++.|+..+.++++++|.+..++...|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK--l~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK--LRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH--hhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 44568888999999999999999999999754 467889999999 99999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT 505 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 505 (558)
.+|.++..+++|+..|.+.++ .+|....+.-..++
T Consensus 176 eayek~ek~eealeDyKki~E-------~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILE-------SDPSRREAREAIAR 210 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHH-------hCcchHHHHHHHHh
Confidence 999999999999999999999 66765555444443
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=6.1e-07 Score=75.69 Aligned_cols=106 Identities=19% Similarity=0.107 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI-----ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 497 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 497 (558)
+-.-|.-++. .|+|++|..-|..|+.+.|..+. .+.+.|.+..+++.++.|+....++++ ..|...
T Consensus 98 lK~EGN~~F~--ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-------l~pty~ 168 (271)
T KOG4234|consen 98 LKKEGNELFK--NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-------LNPTYE 168 (271)
T ss_pred HHHHHHHhhh--cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-------cCchhH
Confidence 3455788888 99999999999999999987643 788899999999999999999999999 789999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHH
Q 048034 498 EALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSM 537 (558)
Q Consensus 498 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 537 (558)
.++...|.+|.++..+++|++-|+++++.+|...+....+
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999999999999999999999998776554443
No 193
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.56 E-value=2.6e-06 Score=76.73 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcC
Q 048034 272 QAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKG 351 (558)
Q Consensus 272 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~ 351 (558)
.+..|.-++..|+|..|...|..-++..|+.. ..+.+++.||.+++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-------------------------------~~~nA~yWLGe~~y~qg 192 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-------------------------------YTPNAYYWLGESLYAQG 192 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-------------------------------ccchhHHHHHHHHHhcc
Confidence 66788888999999999999999999999853 44789999999999999
Q ss_pred ChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 048034 352 QHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIA 425 (558)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 425 (558)
+++.|...|..+.+-.|+.+ .-+++++.||.+...+|+.++|...|+++++..|+...+...
T Consensus 193 ~y~~Aa~~f~~~~k~~P~s~------------KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 193 DYEDAAYIFARVVKDYPKSP------------KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred cchHHHHHHHHHHHhCCCCC------------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999888864 457889999999999999999999999999999988766543
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.55 E-value=4e-05 Score=64.22 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=112.8
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
.-.+.+|+.....|++.+|..+|++++.---. .+.....++++..+..+++..|...+++..+.+|
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA--------------~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFA--------------HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccC--------------CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 45678999999999999999999999863211 2456788999999999999999999999999887
Q ss_pred C--CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 418 N--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 418 ~--~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
. .+.....+|.++.. .|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+..
T Consensus 156 a~r~pd~~Ll~aR~laa--~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 156 AFRSPDGHLLFARTLAA--QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred ccCCCCchHHHHHHHHh--cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 5 46678889999999 99999999999999999886 6777888999999999999888777766643
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.7e-05 Score=70.18 Aligned_cols=205 Identities=15% Similarity=0.075 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 238 DFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 238 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
.+..|.+....|+..+.+.-+..+...-. .+..........+..++.+++-+. ..+..+..++.-.+
T Consensus 125 R~lhAe~~~~lgnpqesLdRl~~L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~k 191 (366)
T KOG2796|consen 125 RILHAELQQYLGNPQESLDRLHKLKTVVS-------KILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMK 191 (366)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHH-------HHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcch
Confidence 34456677777777777766655543211 111111112222344444444332 23444555555555
Q ss_pred CHhHHHHHHHHHhhcC-CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 318 CFSALSYLAHRVFTTD-KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
.+.-...+++++++.+ |..|.....+|.+.++.|+.+.|..+|++.-+....-... .....+..+.+.+|
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~---------q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL---------QGKIMVLMNSAFLH 262 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc---------chhHHHHhhhhhhe
Confidence 5555555566655555 4567888889999999999999999999665433221111 11223566778888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLH 466 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~ 466 (558)
...+++..|...|.+++..+|.++.+.++.|.|... .|+..+|++..+.++...|... ...+++..+|
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 889999999999999999999999999999999999 9999999999999999998743 2445555444
No 196
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.54 E-value=3.6e-08 Score=89.72 Aligned_cols=227 Identities=12% Similarity=-0.003 Sum_probs=150.4
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 320 (558)
.|.-|+++|.|++|+.+|.+.+..+|.++..+...|.+|++...|..|..-+..++.++.....++...+..-..+|...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 48889999999999999999999999999999999999999999999999999998888776666666666666667777
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcC
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMH 400 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 400 (558)
+|..-++.++.+.|.+.+..-.++.+-. ..++ +-+.+..|....+...+... ...-.-|..+...|
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~------l~~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQI------LPIKKPGYKFSKKA 248 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhh------ccccCcchhhhhhh
Confidence 7777777777777766555444443332 1111 11122222222221111100 00122356667778
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 401 MPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYK 480 (558)
Q Consensus 401 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 480 (558)
+++.++.+|.+-+.....+...-.+ +..|.+ ..+++.++...-+++..+|........-+..---.|...++...++
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~K--I~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~ 325 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDK--IFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQ 325 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHH--HhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchh
Confidence 8888888887766555444443334 667777 7888888888888887777655545455555555566667777777
Q ss_pred HHHH
Q 048034 481 KDLE 484 (558)
Q Consensus 481 ~al~ 484 (558)
.++.
T Consensus 326 T~~~ 329 (536)
T KOG4648|consen 326 TAVK 329 (536)
T ss_pred heee
Confidence 6665
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.54 E-value=3.2e-07 Score=66.17 Aligned_cols=65 Identities=25% Similarity=0.177 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
.|++++|+..|++++..+|++..+++.+|.++.+.|++++|...+++++. ..|+++.++..++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-------~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK-------QDPDNPEYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG-------GGTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCcCHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999998 678888887777753
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.54 E-value=3.8e-06 Score=68.27 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 048034 268 SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYY 347 (558)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~ 347 (558)
++..++..|...+..|+|++|++.|+.+....|... ....+...+|.+|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-------------------------------ya~qAqL~l~yay 57 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-------------------------------YAEQAQLDLAYAY 57 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-------------------------------ccHHHHHHHHHHH
Confidence 456777888888899999999999999888888743 3467788899999
Q ss_pred hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC---------------HHHHHHHHHHH
Q 048034 348 SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM---------------PFYALHYFRKS 412 (558)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~---------------~~~A~~~~~~a 412 (558)
+..+++++|+..+++-++++|+++. -.-+++..|.++..+.. ...|...|++.
T Consensus 58 y~~~~y~~A~a~~~rFirLhP~hp~------------vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l 125 (142)
T PF13512_consen 58 YKQGDYEEAIAAYDRFIRLHPTHPN------------VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL 125 (142)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCCC------------ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence 9999999999999999999988754 34577788887777654 44556666666
Q ss_pred HhcCCCCH
Q 048034 413 VFLQPNDS 420 (558)
Q Consensus 413 ~~~~p~~~ 420 (558)
+...|++.
T Consensus 126 v~~yP~S~ 133 (142)
T PF13512_consen 126 VRRYPNSE 133 (142)
T ss_pred HHHCcCCh
Confidence 66655554
No 199
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=7.3e-06 Score=78.52 Aligned_cols=227 Identities=11% Similarity=0.008 Sum_probs=154.4
Q ss_pred CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcC----CC-hHHHHHHHHHHHHcccHHHHHHHHHHH---HHc---
Q 048034 230 NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFG----FS-NYLQAQIAKAQYSLREFEQVEVVFEEL---LRN--- 298 (558)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~---l~~--- 298 (558)
.....-+..++.|.++.....+.+|++........-. .. ..+-+..-..+....+.++|+.++.-+ +..
T Consensus 95 d~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~ 174 (696)
T KOG2471|consen 95 SLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM 174 (696)
T ss_pred hhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344466677889999999999999887776655211 11 112233344455556666666554332 211
Q ss_pred CC--CCc-------------------------chHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcC
Q 048034 299 DP--YRV-------------------------EDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKG 351 (558)
Q Consensus 299 ~p--~~~-------------------------~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~ 351 (558)
.+ ++. .....-...+.++.....+..-...++.+..+.+.+....++.++..|
T Consensus 175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~g 254 (696)
T KOG2471|consen 175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHG 254 (696)
T ss_pred cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhc
Confidence 11 000 111111223444455555555566677777889999999999999999
Q ss_pred ChHHHHHHHHHHH-ccCcC---CHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc---------CC-
Q 048034 352 QHEKSVVYFRRAL-KLNKN---YLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL---------QP- 417 (558)
Q Consensus 352 ~~~~A~~~~~~al-~~~p~---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~---------~p- 417 (558)
+|.+|.+.+...- ...|. .+.. .....|.++|.+++++|.|.-+..+|.+|++. .|
T Consensus 255 n~~kA~KlL~~sni~~~~g~~~T~q~----------~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~ 324 (696)
T KOG2471|consen 255 NHPKAMKLLLVSNIHKEAGGTITPQL----------SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA 324 (696)
T ss_pred chHHHHHHHHhcccccccCccccchh----------hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999876531 11122 0110 02235899999999999999999999999961 11
Q ss_pred --------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048034 418 --------NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 468 (558)
Q Consensus 418 --------~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 468 (558)
..-.+.++.|..|.. .|++-.|.+||.++......+|..|..+|.++..
T Consensus 325 ~~~tls~nks~eilYNcG~~~Lh--~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 325 KTFTLSQNKSMEILYNCGLLYLH--SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cceehhcccchhhHHhhhHHHHh--cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 234678999999999 9999999999999999999999999999998765
No 200
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.0015 Score=64.10 Aligned_cols=334 Identities=12% Similarity=0.076 Sum_probs=189.6
Q ss_pred HhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCC----------C-CchH
Q 048034 167 TLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSIN----------L-NNHW 235 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~----------~-~~~~ 235 (558)
+.++.+|.|...|+.+-.-+..+ .+++....|++.+..+|..+.+|...+.-........++. + -+-|
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW 89 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLW 89 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHH
Confidence 34556899999999998887776 9999999999999999999999987755433222222110 1 1222
Q ss_pred HHHHHHHHHHHHHhchHHH----HHHHHHHHh---hcCCChHHHHHHHHHHH---------HcccHHHHHHHHHHHHHcC
Q 048034 236 MKDFFLASTYQELRMHNEA----LTKYEYLQG---TFGFSNYLQAQIAKAQY---------SLREFEQVEVVFEELLRND 299 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A----~~~~~~~~~---~~p~~~~~~~~~a~~~~---------~~~~~~~A~~~~~~~l~~~ 299 (558)
+ .++..+-...|+...+ .+.|+-++. .++.+..+|...+..+. ...+.+.-.+.|++++..-
T Consensus 90 ~--lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 90 K--LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred H--HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 2 1122222333333332 344554444 24555556666655443 2335566677888888643
Q ss_pred CCCcchHHH-H------HHHH-------HhcCCHhHH-------------------------------------------
Q 048034 300 PYRVEDMDM-Y------SNVL-------YAKECFSAL------------------------------------------- 322 (558)
Q Consensus 300 p~~~~~~~~-~------~~~l-------~~~~~~~~a------------------------------------------- 322 (558)
-.+.+-+.. + .+.. -....+..|
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 333221100 0 0000 000011111
Q ss_pred -----------------HHHHHHHhhcCCCChhHHHHHHHHHhhcCC--------------hHHHHHHHHHHHccCcCCH
Q 048034 323 -----------------SYLAHRVFTTDKYRPESCCIIGNYYSLKGQ--------------HEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 323 -----------------~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~~ 371 (558)
....++++..-+..+++|+..+.++...++ .+++..+|++++...-..
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~- 326 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE- 326 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-
Confidence 112223333445566666665555555555 566666777666532211
Q ss_pred HHHHHhchhccccchHHHHHhHHHHHHcC---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 372 SAWTLMGHEYKSIDYRAWYGLGQAYEMMH---MPFYALHYFRKSVFLQPNDS-RLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
+...++.++..-...- .++....++++++.+...++ -+|+.+-..-.+ ..-...|...|.+
T Consensus 327 -------------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR--~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 327 -------------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR--AEGLKAARKIFKK 391 (656)
T ss_pred -------------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH--hhhHHHHHHHHHH
Confidence 1223444444333222 26666677777776544333 345555555555 6667788888888
Q ss_pred HHhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 448 AANCNDSEAIALNQLAKL-HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 448 al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
|-+..-....++..-|.+ |...++.+-|...|+-.++. .++.+..-......+...|+-..|...|++++..
T Consensus 392 aR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkk-------f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 392 AREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKK-------FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 876543322333333332 44578888888888888883 4566666666777778888888888888888865
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.49 E-value=3.7e-06 Score=68.34 Aligned_cols=111 Identities=22% Similarity=0.150 Sum_probs=92.5
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
...+..+|..|...++.|+|.+|++.|+.+....|...-+-.. .+.++.+|+..++++
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qA----------------------qL~l~yayy~~~~y~ 64 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQA----------------------QLDLAYAYYKQGDYE 64 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHH----------------------HHHHHHHHHHccCHH
Confidence 3467789999999999999999999999999999976433322 233499999999999
Q ss_pred HHHHHHHHHHhhcCCCh---HHHHHHHHHHHHccc---------------HHHHHHHHHHHHHcCCCCcch
Q 048034 253 EALTKYEYLQGTFGFSN---YLQAQIAKAQYSLRE---------------FEQVEVVFEELLRNDPYRVED 305 (558)
Q Consensus 253 ~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~~ 305 (558)
+|+..+++.++++|.++ .+++..|.+++.... ...|...|+++++..|++..+
T Consensus 65 ~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 65 EAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 99999999999988775 588889999998876 778888888888888876543
No 202
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.48 E-value=1.3e-05 Score=62.87 Aligned_cols=95 Identities=20% Similarity=0.117 Sum_probs=86.3
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA----IALNQLA 463 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la 463 (558)
.+-..|.+....|+.+.|++.|.+++.+.|..+.+|++.+..+.- +|+.++|+..+++++++..+.. .++...|
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL--q~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL--QGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH--cCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 344567888899999999999999999999999999999999999 9999999999999999864433 3888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 048034 464 KLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~ 484 (558)
.+|..+|+.+.|...|+.+.+
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHH
Confidence 999999999999999999987
No 203
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.3e-06 Score=71.94 Aligned_cols=177 Identities=18% Similarity=0.147 Sum_probs=119.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccc-hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSID-YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
-|+.|...+++..|=..|.++-...-...+ ..+ ...|...+.+|. .+++.+|+.++++++++..+-.+
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~~s----------khDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKAGS----------KHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcCC----------chhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhH
Confidence 667777777777777777777554321111 011 233444455554 45999999999999988665443
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 422 ------LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 422 ------~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
.+..+|.+|.. .+.++++|+.+|+++-+....+ ..++...+..-..+++|.+|+..|++.....-..
T Consensus 109 f~~aAk~~~~iaEiyEs-dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYES-DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHhhhhhHHHHHhh-hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34588999986 2589999999999997664332 2377788888889999999999999988732111
Q ss_pred hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 490 EREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 490 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
.-..-.-...++.-|.|++-..+.-.+...+++..+++|.-.
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 001111122344457778877898889999999999988643
No 204
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.00097 Score=65.36 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=97.9
Q ss_pred HHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 048034 200 VESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQ 279 (558)
Q Consensus 200 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~ 279 (558)
++-++.+|.+.++|..| ..-+ +...+++....|++....+|.++.+|.......
T Consensus 10 ~~rie~nP~di~sw~~l-------------------------ire~-qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~E 63 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQL-------------------------IREA-QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERE 63 (656)
T ss_pred HHHHhcCCccHHHHHHH-------------------------HHHH-ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 67788999999999987 3333 334889999999999999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc-CCHh-------HHHHHHHHHhhcCCCChhHHHHHHHHHh---
Q 048034 280 YSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK-ECFS-------ALSYLAHRVFTTDKYRPESCCIIGNYYS--- 348 (558)
Q Consensus 280 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~-~~~~-------~a~~l~~~~~~~~~~~~~~~~~lg~~~~--- 348 (558)
+...+|+....+|.+++..-- +.+.+..|....... ++.. +|..++..-+..++.+...|...++...
T Consensus 64 l~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ve 142 (656)
T KOG1914|consen 64 LASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVE 142 (656)
T ss_pred HHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccc
Confidence 999999999999999987432 345554443332222 2222 3333444434456666667766665543
Q ss_pred ------hcCChHHHHHHHHHHHccC
Q 048034 349 ------LKGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 349 ------~~~~~~~A~~~~~~al~~~ 367 (558)
...+.+.-...|++|+..-
T Consensus 143 a~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 143 AVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCc
Confidence 2234555667788887653
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.46 E-value=1.1e-06 Score=64.47 Aligned_cols=71 Identities=28% Similarity=0.260 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 048034 426 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT 505 (558)
Q Consensus 426 la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 505 (558)
|..+|.. .+++++|++++++++.++|+++..+..+|.++..+|++++|+..|+++++ ..|+++.+....+.
T Consensus 1 l~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~-------~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQ--QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE-------LSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHh--CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH-------HCCCcHHHHHHHHh
Confidence 3567888 99999999999999999999999999999999999999999999999998 56777776655543
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.44 E-value=4e-06 Score=75.52 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHH
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL 500 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 500 (558)
+..|.-++. .|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++.++ ..|.-++++
T Consensus 145 Y~~A~~~~k--sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P----~s~KApdal 218 (262)
T COG1729 145 YNAALDLYK--SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP----KSPKAPDAL 218 (262)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC----CCCCChHHH
Confidence 344444444 555555555555555555543 23555555555555555555555555555332 334445555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 501 IFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 501 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
+.+|.+...+|+.++|...|+++++..|
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 5555555555555555555555555443
No 207
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.41 E-value=0.00036 Score=70.92 Aligned_cols=168 Identities=17% Similarity=0.071 Sum_probs=123.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH----HcCCHHHHHHHHHHHHhcCCC
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE----MMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~----~~~~~~~A~~~~~~a~~~~p~ 418 (558)
+-.+.--.|+-+.++..+.++.+ .++-......+.. -.|+.....+. .....+.|...+.......|+
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~L-------L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~ 265 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVL-------LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN 265 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHH-------HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC
Confidence 33344456899999999999987 3332222111110 01222111111 245678899999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
.+-.....|.++.. .|+.++|+..|++++...... ...++.+|.++..++++++|..+|.+..+. ..-
T Consensus 266 s~lfl~~~gR~~~~--~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------s~W 337 (468)
T PF10300_consen 266 SALFLFFEGRLERL--KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------SKW 337 (468)
T ss_pred cHHHHHHHHHHHHH--hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------ccc
Confidence 99999999999999 999999999999998643332 237899999999999999999999999983 223
Q ss_pred ChHHHHHHHHHHHHHcCCH-------HHHHHHHHHHhcc
Q 048034 495 NMVEALIFLATHCRAHNRF-------EDAEVYCTRLLDY 526 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 526 (558)
......+..|-++...|+. ++|.+++.++-.+
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 3344555579999999999 9999999988654
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.41 E-value=1.2e-06 Score=84.57 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=64.2
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRL---WIAMAQCYETEQLHMLEEAIKCYRRAANCN 452 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~~~~~~~~A~~~~~~al~~~ 452 (558)
|+++.+|+++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|.. +|++++|+.++++|+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~--LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY--REEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhc
Confidence 6678899999999999999999999999999999999855 9999999999 999999999999999973
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.39 E-value=4.3e-07 Score=67.61 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
+.++..+|.+|...|++++|+.+|++++++......... ....++.++|.++...|++++|+.++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHP--------DTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHH--------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 568899999999999999999999999987322222211 12467899999999999999999999999875
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.37 E-value=2e-06 Score=83.17 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=65.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI---ALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
.+|+++..|+++|.+|.. +|++++|+.+|+++++++|++.. +|+++|.+|..+|++++|+.+++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~--lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS--KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478899999999999999 99999999999999999999985 4999999999999999999999999984
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00024 Score=61.94 Aligned_cols=193 Identities=11% Similarity=0.040 Sum_probs=126.2
Q ss_pred HhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhc-
Q 048034 187 KDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTF- 265 (558)
Q Consensus 187 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 265 (558)
...+++++|.++|.++ +..|.-..+++.|-..|.++-+..
T Consensus 25 gg~~k~eeAadl~~~A---------------------------------------an~yklaK~w~~AG~aflkaA~~h~ 65 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA---------------------------------------ANMYKLAKNWSAAGDAFLKAADLHL 65 (288)
T ss_pred CCCcchHHHHHHHHHH---------------------------------------HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3456899999999998 444444555555555555544321
Q ss_pred ----CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHH
Q 048034 266 ----GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCC 341 (558)
Q Consensus 266 ----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 341 (558)
..+.-..+.-|.-.++..+.++|+.++++++++..+ +|++..+ +..+.
T Consensus 66 k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~--------------~Grf~~a--------------Ak~~~ 117 (288)
T KOG1586|consen 66 KAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTD--------------MGRFTMA--------------AKHHI 117 (288)
T ss_pred hcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHh--------------hhHHHHH--------------Hhhhh
Confidence 111222222333345556889999999888875443 2333322 24556
Q ss_pred HHHHHHhhc-CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 048034 342 IIGNYYSLK-GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS 420 (558)
Q Consensus 342 ~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~ 420 (558)
.+|.+|... .++++|+.+|+++-+........ ...-..+...++.-..+++|.+|+..|++.....-+++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~---------ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV---------SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 788888765 89999999999997754332211 00113455667777889999999999999887655554
Q ss_pred H-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 048034 421 R-------LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 421 ~-------~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 457 (558)
. .+..-|.|++- ..+.-.+...+++-.+++|....
T Consensus 189 LLKys~KdyflkAgLChl~--~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 189 LLKYSAKDYFLKAGLCHLC--KADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHhHHHHHHHHHHHHhHh--cccHHHHHHHHHHHHhcCCcccc
Confidence 3 34556778877 78888888888888888887543
No 212
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.35 E-value=1.1e-05 Score=63.20 Aligned_cols=101 Identities=19% Similarity=0.081 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHH
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 502 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 502 (558)
+..-|..... .|+.+.|++.|.+++.+.|..+.++++.+..+.-+|+.++|+..+++++++.. +....-..++..
T Consensus 46 LEl~~valaE--~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag---~~trtacqa~vQ 120 (175)
T KOG4555|consen 46 LELKAIALAE--AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG---DQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHh--ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC---ccchHHHHHHHH
Confidence 4456778888 99999999999999999999999999999999999999999999999999631 112233567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 503 LATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 503 la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
.|.+|..+|+-+.|..-|..+.++..
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 99999999999999999999988753
No 213
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00047 Score=63.43 Aligned_cols=168 Identities=12% Similarity=0.117 Sum_probs=135.0
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCCC---cchHHHHHHHHHhcC
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN-DPYR---VEDMDMYSNVLYAKE 317 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~---~~~~~~~~~~l~~~~ 317 (558)
+.+....|++.+|....+++++.+|.+..++..--.+++..|+.+.-...+++++.. +|+- ....-.|+-.+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 566778899999999999999999999888888888999999999999999999876 5544 334455677788889
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
-+.+|...+.+++++++++.-+...++.++...|++.++.++..+.-..-. ..|.+.. ..|..-+..+.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr---~s~mlas--------HNyWH~Al~~i 258 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR---QSWMLAS--------HNYWHTALFHI 258 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh---hhhHHHh--------hhhHHHHHhhh
Confidence 999999999999999999999999999999999999999998876543222 2333333 23556778888
Q ss_pred HcCCHHHHHHHHHHHH--hcCCCCH
Q 048034 398 MMHMPFYALHYFRKSV--FLQPNDS 420 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~--~~~p~~~ 420 (558)
..+.|+.|+..|.+-+ ++..++.
T Consensus 259 E~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 259 EGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred cccchhHHHHHHHHHHHHHhhccch
Confidence 8899999999998754 3344444
No 214
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.8e-06 Score=72.46 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=90.5
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
..-|..++...+|..|+..|.+++.++|..+..|.+.+.|+++ .++++.+.....+++++.|+....++.+|......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 3456777888899999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 048034 470 GRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 470 g~~~~A~~~~~~al~~~~~ 488 (558)
..+++|+..+.++......
T Consensus 92 ~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred ccccHHHHHHHHHHHHHhc
Confidence 9999999999999876544
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.25 E-value=0.0055 Score=62.42 Aligned_cols=193 Identities=13% Similarity=0.095 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
.+..++.+-+++-.| .|.-+++.-|.. ...+..+.--.||-+.++..+.++.+. ++-...+-.+..+.+
T Consensus 164 ~~d~~~~sgv~~G~G-------~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y 232 (468)
T PF10300_consen 164 PIDEFFESGVYFGFG-------LFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWY 232 (468)
T ss_pred hhHHHHHHhHHHHHH-------HHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHH
Confidence 444445555555555 444455554422 222333334458889999999888762 222111111111111
Q ss_pred ------------hcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc
Q 048034 315 ------------AKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK 382 (558)
Q Consensus 315 ------------~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 382 (558)
.......+..++.......|+.+-..+..|.++...|+.++|+..|++++........ +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l----- 303 (468)
T PF10300_consen 233 HLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----L----- 303 (468)
T ss_pred HHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----H-----
Confidence 1245677889999999999999999999999999999999999999998854333222 1
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhc
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR-LWIAMAQCYETEQLHML-------EEAIKCYRRAANC 451 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~~~~~~-------~~A~~~~~~al~~ 451 (558)
..-.++.+|.++..+.+|++|..+|.+..+.+.-+.. ..+..|.|+.. .|+. ++|...|.++-..
T Consensus 304 --~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~--l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 304 --HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM--LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred --HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--hccchhhhhhHHHHHHHHHHHHHH
Confidence 2246788999999999999999999999887655433 34566788888 8888 7888888776543
No 216
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.24 E-value=0.0016 Score=66.07 Aligned_cols=231 Identities=13% Similarity=0.024 Sum_probs=110.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcC
Q 048034 272 QAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKG 351 (558)
Q Consensus 272 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~ 351 (558)
+-.+|.-|...|+|+.|.++|.++-. ...-..+|-+.|++..+..+..++..... ....+...+.-.-..|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~~e~-t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHGPEA-TISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcCchh-HHHHHHHhHHhHHhhc
Confidence 44567777778888888877766521 11122344556777777777776543221 2334555566666777
Q ss_pred ChHHHHHHHHHHHccCcCCHHHHHHhchhcc-----------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 048034 352 QHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-----------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS 420 (558)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~ 420 (558)
+|.+|.+.|-..- .|+-.-..+..-..+. .........+|.-|...|+...|...|-++-..
T Consensus 839 kf~eaeqlyiti~--~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~----- 911 (1636)
T KOG3616|consen 839 KFAEAEQLYITIG--EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF----- 911 (1636)
T ss_pred chhhhhheeEEcc--CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH-----
Confidence 7777766553221 1221111110000000 011223334455555555555555555444321
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH--HHHH---------HHHHHHHcCCHHHHHHH------HHHHH
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI--ALNQ---------LAKLHHALGRDEEAAFY------YKKDL 483 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~---------la~~~~~~g~~~~A~~~------~~~al 483 (558)
..-.+.|.. .+-+++|....+. ....+.. +.+. -..++-+.|-.+.|+.. |+-+.
T Consensus 912 ---kaavnmyk~--s~lw~dayriakt---egg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~af 983 (1636)
T KOG3616|consen 912 ---KAAVNMYKA--SELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAF 983 (1636)
T ss_pred ---HHHHHHhhh--hhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHH
Confidence 111222333 3333333322211 0111110 1111 01223334444444432 11111
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 484 ERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
++.. .......+.++..+|..+...|++++|-+.|-.+++++.
T Consensus 984 dlar--i~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 984 DLAR--IAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHH--HhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 1110 012245577888899999999999999999999988764
No 217
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.23 E-value=1e-05 Score=67.91 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH---HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048034 353 HEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE---MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQC 429 (558)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 429 (558)
|+.|.+.++.....+|.+.++++.-| .++..|++.-. ....+++|+.-|++|+.++|+...++..+|.+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG--------~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWG--------GALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH--------HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHH--------HHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 67888999999999999888777666 35555655422 33578899999999999999999999999999
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 430 YETEQLH-----------MLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 430 ~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
|.. .+ .|++|..+|++|...+|++......|.
T Consensus 79 ~ts--~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 79 YTS--LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHH--HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHH--HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 986 44 388999999999999999876544443
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00048 Score=60.55 Aligned_cols=213 Identities=12% Similarity=0.036 Sum_probs=133.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
-...+..-+.+|...+++++|..++.++++-...|...|..- ... . -.+....+...+.++
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA-Kay---------------E---qaamLake~~klsEv 90 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA-KAY---------------E---QAAMLAKELSKLSEV 90 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH-HHH---------------H---HHHHHHHHHHHhHHH
Confidence 355777788889999999999999999997766665555432 000 0 025556677788899
Q ss_pred HHHHHHHHhh-----cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHH
Q 048034 255 LTKYEYLQGT-----FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRV 329 (558)
Q Consensus 255 ~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~ 329 (558)
..+++++... .|+....-...|--....-+.++|+.+|++++..-... ++...+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--------------dr~~ma------- 149 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--------------DRDQMA------- 149 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--------------chHHHH-------
Confidence 9999888763 34444444455555566677788888888776643222 111111
Q ss_pred hhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHH
Q 048034 330 FTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYF 409 (558)
Q Consensus 330 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 409 (558)
.+.+-..++++.+..++++|-..+.+-....-..... +...+.+.....+|....+|..|..+|
T Consensus 150 -------~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y---------~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 150 -------FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY---------NSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred -------HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc---------ccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 2344457778888888888877777644332111000 122344555556666677888888888
Q ss_pred HHHHhc----CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048034 410 RKSVFL----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 446 (558)
Q Consensus 410 ~~a~~~----~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~ 446 (558)
+...++ .+++.++..+|-..|- .|+.++..+.+.
T Consensus 214 r~~~qip~f~~sed~r~lenLL~ayd---~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 214 RDCSQIPAFLKSEDSRSLENLLTAYD---EGDIEEIKKVLS 251 (308)
T ss_pred cchhcCccccChHHHHHHHHHHHHhc---cCCHHHHHHHHc
Confidence 876664 3456667777766664 477776665543
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00023 Score=65.41 Aligned_cols=95 Identities=11% Similarity=0.100 Sum_probs=48.6
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhc-CCCChh---HHHHHHHHHhhc
Q 048034 275 IAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTT-DKYRPE---SCCIIGNYYSLK 350 (558)
Q Consensus 275 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~-~~~~~~---~~~~lg~~~~~~ 350 (558)
.+.+....|++.+|-...+++++..|.+.-++..--..++.+|....-...+++++.. +++-|- +.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 4455666777777777788888877777655544444444444444444444444433 333321 112223333344
Q ss_pred CChHHHHHHHHHHHccCcC
Q 048034 351 GQHEKSVVYFRRALKLNKN 369 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~ 369 (558)
|-|++|.+.-+++++++|.
T Consensus 189 g~y~dAEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRF 207 (491)
T ss_pred ccchhHHHHHHhhccCCCc
Confidence 4444444444444444444
No 220
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.21 E-value=1.2e-05 Score=67.48 Aligned_cols=97 Identities=21% Similarity=0.164 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCC-
Q 048034 437 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD---EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNR- 512 (558)
Q Consensus 437 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 512 (558)
-++.|.+.++.....+|.+++.+++.|.++..+.++ .++...++.++..++.....+|+...+++.+|.+|..++.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 367788888888888999999888888888776544 5677778877777777777899999999999999977653
Q ss_pred ----------HHHHHHHHHHHhccCCCcHHH
Q 048034 513 ----------FEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 513 ----------~~~A~~~~~~al~~~~~~~~~ 533 (558)
|++|..+|+++...+|.+...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 789999999999998765433
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.003 Score=56.35 Aligned_cols=217 Identities=14% Similarity=0.017 Sum_probs=151.5
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCC------------------hH-HHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFS------------------NY-LQAQIAKAQYSLREFEQVEVVFEELLRNDPY 301 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------------~~-~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 301 (558)
.-.++.++..+++|...+...-+.+..+ |. .....|.+....|+..+.+.-+..+...-.
T Consensus 75 r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V~- 153 (366)
T KOG2796|consen 75 RLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTVVS- 153 (366)
T ss_pred HHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-
Confidence 3566777777888877666554432111 11 223346666677777766655544432110
Q ss_pred CcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhc
Q 048034 302 RVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEY 381 (558)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 381 (558)
...+........+....+.++-+ ..+.+.+..++...|+|.-++..+.+.++.+|..
T Consensus 154 ------~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~----------- 210 (366)
T KOG2796|consen 154 ------KILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ----------- 210 (366)
T ss_pred ------HHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-----------
Confidence 01111111111122222222211 2456778889999999999999999999987542
Q ss_pred cccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 048034 382 KSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL----Q--PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 382 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~----~--p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~ 455 (558)
++.....||.+-++.|+.+.|..+|++.-+. + ..+..+..+.+.++.. .+++.+|...|.+.+..+|.+
T Consensus 211 ---~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg--~nn~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 211 ---EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG--QNNFAEAHRFFTEILRMDPRN 285 (366)
T ss_pred ---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec--ccchHHHHHHHhhccccCCCc
Confidence 4457788999999999999999999955432 2 2344566778888888 999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
+.+.++.|.|..-.|+..+|++.++.+++..
T Consensus 286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 286 AVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999843
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.20 E-value=0.006 Score=61.11 Aligned_cols=122 Identities=17% Similarity=0.158 Sum_probs=67.1
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-NDSEAIALNQLAKL 465 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~ 465 (558)
..|......-...|+++...-.|++++--.......|...+..... .|+.+-|...+.++.++ .|+.+.+...-+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~--~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES--SGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH--cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3444444444555556666666666555555555566666665555 56555555555555544 24444455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHH
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAE 517 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 517 (558)
-...|++..|...++++.+ .-|+...+-...+.+....|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~-------e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIES-------EYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHh-------hCCchhhhHHHHHhHHHHhcchhhhh
Confidence 5555666666666666555 22555555555555555555555555
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00038 Score=61.19 Aligned_cols=178 Identities=13% Similarity=0.045 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc-
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL- 415 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~- 415 (558)
...+..-+..|...++|++|..++.+|.+-..++...|. -..++-..|.+...+..+.++..+|++|..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh---------AAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH---------AAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345566788899999999999999999976655444322 2246667778888889999999999999875
Q ss_pred ----CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 416 ----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 416 ----~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
.|+...+-...+-=... ..++++|+..|++++.+...+ ...+-..+.++.+..++.+|...+.+-...
T Consensus 102 ~E~GspdtAAmaleKAak~le--nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALE--NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 34444444444444455 789999999999998764332 235667788999999999998888775543
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 486 MEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 486 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
..... ..+.....+.....++....+|..|..+++...++
T Consensus 180 ~~~~~-~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 180 ADKCD-AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHh-hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 32221 23444555666666777778999999999998775
No 224
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.15 E-value=6.3e-06 Score=53.17 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHh
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQS 218 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 218 (558)
|.+++.+|..+...|++++|+++|+++++.+|++..+|..|+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999999998853
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.12 E-value=0.00097 Score=64.14 Aligned_cols=196 Identities=14% Similarity=0.037 Sum_probs=135.5
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH---cCCHHHHHHHHHH-
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM---MHMPFYALHYFRK- 411 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~- 411 (558)
++++...+-..|....+|+.-+...+..-.+ |+... +....+.+..|.++.+ .|+.++|+..+..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~----------~~~~~i~~~yafALnRrn~~gdre~Al~il~~~ 208 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDV----------ANQHNIKFQYAFALNRRNKPGDREKALQILLPV 208 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccch----------hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 3566667777888999999998888776554 33221 2344567778888888 9999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 412 SVFLQPNDSRLWIAMAQCYETE-------QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~-------~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.....+.++.++..+|.+|... .....++|+..|.++.+.+|+ ...-.+++.++...|...+...-.++..-
T Consensus 209 l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 209 LESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred HhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 4556678899999999999750 023488999999999999964 44556777777777765444443444331
Q ss_pred HHH----hhh-hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 048034 485 RME----AEE-REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMA 544 (558)
Q Consensus 485 ~~~----~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~ 544 (558)
.+. +.+ .....+...+..++.+..-.|++++|..++++++.+.|+.-+ ....++.+.-+
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~-l~St~~ni~Li 351 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE-LESTLENIKLI 351 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh-HHHHHHHHHHH
Confidence 111 111 112233344455778888899999999999999999866554 44555554443
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=9.5e-05 Score=69.87 Aligned_cols=135 Identities=10% Similarity=0.029 Sum_probs=111.3
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM-LEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
+|..+.....+.+..+.|...|.+|....+....+|...|.+... .++ .+.|.+.|+.+++..|.+...|......+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~--~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY--CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH--TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 577777888888889999999999997777778999999999665 554 55599999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhhcCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 467 HALGRDEEAAFYYKKDLERMEAEEREGPNM---VEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 467 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
...|+.+.|..+|++++..+ +.. ..+|......-.+.|+.+......+++.+..|.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999842 222 46777888999999999999999999999876644
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.09 E-value=8e-06 Score=52.68 Aligned_cols=42 Identities=36% Similarity=0.663 Sum_probs=29.2
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQ 428 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 428 (558)
.+|+.+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356667777777777777777777777777777777766654
No 228
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.09 E-value=0.012 Score=56.85 Aligned_cols=389 Identities=13% Similarity=0.101 Sum_probs=206.7
Q ss_pred HHHhhcccchHHHHHHHhhccC---ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCC
Q 048034 97 AKSYFDCREYRRAAHVLRDQTG---KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGT 173 (558)
Q Consensus 97 a~~~~~~~~~~rA~~~l~~~~~---~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 173 (558)
|-++-.+|+|..|..+|.+... ..+.+++. ..+.| +..... -..+++.....+..+....|
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lke--Evl~g--rilnAf------------fl~nld~Me~~l~~l~~~~~ 76 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKE--EVLGG--RILNAF------------FLNNLDLMEKQLMELRQQFG 76 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHH--HHHhh--HHHHHH------------HHhhHHHHHHHHHHHHHhcC
Confidence 7888899999999999988732 22222221 11111 000111 11234444455555666678
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
..+++..-.|.+.++.|.+.+|++.+..--..-..+...|..+- .. ..-..+......++++.+.|.+.+
T Consensus 77 ~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-----i~-----~l~~df~l~~i~a~sLIe~g~f~E 146 (549)
T PF07079_consen 77 KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-----IQ-----QLFSDFFLDEIEAHSLIETGRFSE 146 (549)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-----HH-----HHhhHHHHHHHHHHHHHhcCCcch
Confidence 89999999999999999999999998876655334444443320 00 011233334457899999999999
Q ss_pred HHHHHHHHHh-hcC----CChHHH----HHHHHHHHHc----cc-------HHHHHHHHHHHHHcC--------------
Q 048034 254 ALTKYEYLQG-TFG----FSNYLQ----AQIAKAQYSL----RE-------FEQVEVVFEELLRND-------------- 299 (558)
Q Consensus 254 A~~~~~~~~~-~~p----~~~~~~----~~~a~~~~~~----~~-------~~~A~~~~~~~l~~~-------------- 299 (558)
+...+++.+. ..| -+.+.+ ..+|+.|+-. .. |+-+.-+.+++-..+
T Consensus 147 gR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~ 226 (549)
T PF07079_consen 147 GRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELF 226 (549)
T ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHH
Confidence 9999998876 333 122222 2345544321 11 222222222222111
Q ss_pred ----------CCC-----cchHHHHHHHHH--------------hcCCHhHHHHHHHHHhhcC--CCChh---HHHHHHH
Q 048034 300 ----------PYR-----VEDMDMYSNVLY--------------AKECFSALSYLAHRVFTTD--KYRPE---SCCIIGN 345 (558)
Q Consensus 300 ----------p~~-----~~~~~~~~~~l~--------------~~~~~~~a~~l~~~~~~~~--~~~~~---~~~~lg~ 345 (558)
|.. ...+....+.+. ...+.+++..+++.+.... +-.-. .+-.+-.
T Consensus 227 s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls 306 (549)
T PF07079_consen 227 STIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLS 306 (549)
T ss_pred HHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 110 000000000000 0022233333333322211 00011 1111222
Q ss_pred HHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc--------------------------------ccchHHHHHhH
Q 048034 346 YYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--------------------------------SIDYRAWYGLG 393 (558)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------------------------------~~~~~~~~~lg 393 (558)
.....++..+|..++.-...++|+..-....+...-. ..-..-...-+
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 2335677788888877777778775422111110000 00111222334
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHh---------cCC---CcHHH
Q 048034 394 QAYEMMHM-PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK--CYRRAAN---------CND---SEAIA 458 (558)
Q Consensus 394 ~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~--~~~~al~---------~~~---~~~~~ 458 (558)
.-+.+.|. -++|+..++.+++..|.+...-+..-. .. ...|.+|+. .+-+.+. +.| .+...
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~-fv---Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL-FV---KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH-HH---HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 45556665 778999999999988888754332211 11 123333322 1111111 122 22333
Q ss_pred HHHH--HHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 459 LNQL--AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRL 523 (558)
Q Consensus 459 ~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 523 (558)
-+.+ |..++..|++.++.-+-.=..+ ..| ++.++..+|.++...++|++|..++...
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~-------iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTK-------IAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH-------hCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3333 4557789999999877666665 567 7999999999999999999999999864
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.08 E-value=0.00028 Score=68.67 Aligned_cols=196 Identities=12% Similarity=0.012 Sum_probs=116.6
Q ss_pred CCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhch
Q 048034 300 PYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGH 379 (558)
Q Consensus 300 p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 379 (558)
.+....-..+..-.+...+..+-..+++++++++|+.+.++..++.- ...-..+|..+|+++++......
T Consensus 165 ~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l-------- 234 (539)
T PF04184_consen 165 TDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL-------- 234 (539)
T ss_pred CCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh--------
Confidence 33333334444445555666666667777777777766666666542 12234566666666665433210
Q ss_pred hccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--c
Q 048034 380 EYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--E 455 (558)
Q Consensus 380 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~--~ 455 (558)
.........|.. -......+.+ ..+...+|.|..+ +|+.++|++.++..++..|. +
T Consensus 235 -----------g~s~~~~~~g~~-------~e~~~~Rdt~~~~y~KrRLAmCark--lGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 235 -----------GKSQFLQHHGHF-------WEAWHRRDTNVLVYAKRRLAMCARK--LGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred -----------chhhhhhcccch-------hhhhhccccchhhhhHHHHHHHHHH--hCChHHHHHHHHHHHhhCCccch
Confidence 000000111111 0111111122 3345678999999 99999999999999987765 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH-cCC---------------HHHHHHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA-HNR---------------FEDAEVY 519 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~ 519 (558)
..+..++..++..++.+.++...+.+.-+. .-|......+.-|.+..+ .|+ -..|.+.
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi------~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveA 368 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDI------SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEA 368 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccc------cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHH
Confidence 458899999999999999999888886431 235556666655544322 121 2357789
Q ss_pred HHHHhccCCCcH
Q 048034 520 CTRLLDYTGPEK 531 (558)
Q Consensus 520 ~~~al~~~~~~~ 531 (558)
+.+|++.||.-+
T Consensus 369 i~RAvefNPHVp 380 (539)
T PF04184_consen 369 IHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHhCCCCc
Confidence 999999886544
No 230
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.014 Score=56.75 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=92.6
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN-D--SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------- 455 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~-~--~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------- 455 (558)
+.+.+.+|......+.++.|...|..|.+.-.. + ...-.++|.+|.. .|+-+.-.+.++. +.|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~--~~~~ed~y~~ld~---i~p~nt~s~ssq 441 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR--IGDAEDLYKALDL---IGPLNTNSLSSQ 441 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH--hccHHHHHHHHHh---cCCCCCCcchHH
Confidence 445666777777778888888888888765432 2 2234567888888 7776554444443 23332
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 456 ---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 456 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
..+++..|...+.++++.||...+.+.++.. +..+...-....+..|+.+....|+..++.+..+-++++
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 2367778888889999999999999999853 222222333445667899999999999999888777654
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.04 E-value=0.001 Score=64.98 Aligned_cols=229 Identities=14% Similarity=0.073 Sum_probs=137.2
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCCh
Q 048034 274 QIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQH 353 (558)
Q Consensus 274 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 353 (558)
.+..-..+..+.+.-++...++++++|+..+++..++.-- .....++..+++++++.... .......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~-----------~lg~s~~ 239 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEA-----------SLGKSQF 239 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHH-----------hhchhhh
Confidence 4455566788999999999999999999988887765411 12234444455444332211 1111111
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 048034 354 EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN--DSRLWIAMAQCYE 431 (558)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~ 431 (558)
.+....+-..+.....++ ...+...+|.+..++|+.++|++.|+..++..|. +..+..++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~-------------~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL 306 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNV-------------LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL 306 (539)
T ss_pred hhcccchhhhhhccccch-------------hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence 111001111111111111 1235678999999999999999999999988775 4568899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHHHHhhhhcCC
Q 048034 432 TEQLHMLEEAIKCYRRAANC-NDSEAIALNQLAKLHHA-LGR---------------DEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 432 ~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
. ++.|.++...+.+--++ -|+.....+.-|.+-.+ .++ -..|++.+.++++ .+|
T Consensus 307 e--lq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve-------fNP 377 (539)
T PF04184_consen 307 E--LQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE-------FNP 377 (539)
T ss_pred h--cCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH-------hCC
Confidence 9 99999999999986444 25556655555554333 222 1346677888887 455
Q ss_pred ChHHHHHHH------HHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 048034 495 NMVEALIFL------ATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLR 539 (558)
Q Consensus 495 ~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~ 539 (558)
..+..+..+ =....+.|+ .+|+.|.--.+..= ...+.+-.+|.
T Consensus 378 HVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hW-k~veGAL~lL~ 426 (539)
T PF04184_consen 378 HVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHW-KRVEGALNLLH 426 (539)
T ss_pred CCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHH-hcCHhHHHHHH
Confidence 555444332 223455565 66766665555432 33344444443
No 232
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.8e-05 Score=68.97 Aligned_cols=93 Identities=23% Similarity=0.223 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 503 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 503 (558)
..-|..++. ..+|..|+.+|.+++.++|..+..+.+.+.++.++++++.+.....++++ ..|+....++.+
T Consensus 14 kE~gnk~f~--~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-------l~~N~vk~h~fl 84 (284)
T KOG4642|consen 14 KEQGNKCFI--PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-------LDPNLVKAHYFL 84 (284)
T ss_pred Hhccccccc--hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-------cChHHHHHHHHH
Confidence 344667777 88999999999999999999999999999999999999999999999999 789999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q 048034 504 ATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 504 a~~~~~~g~~~~A~~~~~~al~ 525 (558)
|.+......|++|+..+.++..
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999954
No 233
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.012 Score=62.21 Aligned_cols=252 Identities=12% Similarity=0.096 Sum_probs=140.5
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
-+.|.+|-.+|....+.|...+|++.|-++ ++++.+.+. ..+..+.|.|+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eV-------------------------i~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEV-------------------------IDVASRTGKYE 1150 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHH-------------------------HHHHHhcCcHH
Confidence 456889999999999999999999999887 344555554 33444455555
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhc
Q 048034 253 EALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTT 332 (558)
Q Consensus 253 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~ 332 (558)
+-+.++..+-+.. ..+.+-..+..+|.+.++..+-.+.. ..|+ ...+...+.-++..+.++.|.-++..
T Consensus 1151 dLv~yL~MaRkk~-~E~~id~eLi~AyAkt~rl~elE~fi-----~gpN-~A~i~~vGdrcf~~~~y~aAkl~y~~---- 1219 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKV-REPYIDSELIFAYAKTNRLTELEEFI-----AGPN-VANIQQVGDRCFEEKMYEAAKLLYSN---- 1219 (1666)
T ss_pred HHHHHHHHHHHhh-cCccchHHHHHHHHHhchHHHHHHHh-----cCCC-chhHHHHhHHHhhhhhhHHHHHHHHH----
Confidence 5555554443321 11222223333334444433322221 1222 22233334444444444444433333
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc---------------ccchHHHHHhHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK---------------SIDYRAWYGLGQAYE 397 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------~~~~~~~~~lg~~~~ 397 (558)
..-|..++..+...|+|..|+..-++|- ....|...+...+ --++.-+-.+...|.
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence 2234444555555555555555544442 1222322222221 123344567788899
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-C------CcHHHHHHHHHHHHHc
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-N-D------SEAIALNQLAKLHHAL 469 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-~-~------~~~~~~~~la~~~~~~ 469 (558)
..|-+++-+..++.++.+..-.-.++..+|.+|.+ -++++-.+.++--... + | +....|..+..+|.+-
T Consensus 1291 ~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk---ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERAHMGMFTELAILYSK---YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred hcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988888889999999876 4445444444322211 0 1 2234677777777777
Q ss_pred CCHHHHHH
Q 048034 470 GRDEEAAF 477 (558)
Q Consensus 470 g~~~~A~~ 477 (558)
..|+.|.-
T Consensus 1368 ~eyDNAa~ 1375 (1666)
T KOG0985|consen 1368 EEYDNAAL 1375 (1666)
T ss_pred hhhhHHHH
Confidence 77766543
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.94 E-value=0.029 Score=56.37 Aligned_cols=364 Identities=10% Similarity=0.038 Sum_probs=216.6
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcC----HHHhh-------
Q 048034 159 ISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTT----IDILN------- 227 (558)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~------- 227 (558)
..+.......+..-|.--..|-..|..-.+.|..+.+..+|++++...|.....|......+.. .+.+.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4445555666666788888888999999999999999999999999999999999887554421 11111
Q ss_pred ---cCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHH------cccHHHHHHHHHHHHHc
Q 048034 228 ---SINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYS------LREFEQVEVVFEELLRN 298 (558)
Q Consensus 228 ---~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~------~~~~~~A~~~~~~~l~~ 298 (558)
.+..-.+..-..+ ......++++..-..+|++.++.--.....++..=.-+.+ ....+++...-......
T Consensus 142 ~~vG~dF~S~~lWdky-ie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKY-IEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER 220 (577)
T ss_pred HhcccchhccHHHHHH-HHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence 1111111110101 1111344556666677777766422111111111111111 22334444333333210
Q ss_pred --CCCCcchHHHHHHHHH----hcCCHhHHHHHHHHH------------------------h-----hcCC---CChhHH
Q 048034 299 --DPYRVEDMDMYSNVLY----AKECFSALSYLAHRV------------------------F-----TTDK---YRPESC 340 (558)
Q Consensus 299 --~p~~~~~~~~~~~~l~----~~~~~~~a~~l~~~~------------------------~-----~~~~---~~~~~~ 340 (558)
.+..-.....+..-.- ..+..++......+. + ...| ..-..|
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw 300 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNW 300 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHH
Confidence 0100000000000000 001111111111111 1 1112 233567
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Q 048034 341 CIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL-QPND 419 (558)
Q Consensus 341 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-~p~~ 419 (558)
......-...|+++.....|++++---..+.. .|...+......|+.+-|-..+.++.++ .|..
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e---------------fWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDE---------------FWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH---------------HHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 77777778899999999999998876655554 5666666666779999999888888876 4666
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHH
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 499 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 499 (558)
+.+...-+..-.. .|++..|...+++...-.|+...+-...+....+.|+.+.+.. +...............-....
T Consensus 366 ~~i~L~~a~f~e~--~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~~~~i~~~l 442 (577)
T KOG1258|consen 366 PIIHLLEARFEES--NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKENNGILEKL 442 (577)
T ss_pred cHHHHHHHHHHHh--hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhcccccCcchhHHH
Confidence 7777777888777 9999999999999998889988888888888889999998884 222222211111111222334
Q ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 048034 500 LIFLATH-CRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGM 541 (558)
Q Consensus 500 ~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~ 541 (558)
+...++. +.-.++.+.|...+.++++..|++...+-.+++-.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 4445554 34468899999999999999998887776655543
No 235
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.94 E-value=0.00025 Score=67.06 Aligned_cols=145 Identities=13% Similarity=0.049 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHH-HhchHHHHH
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQE-LRMHNEALT 256 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~ 256 (558)
+|..+.....+.+..+.|..+|.++.+..+.++..|... |.+... .++.+.|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~-------------------------A~~E~~~~~d~~~A~~ 57 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAY-------------------------ALMEYYCNKDPKRARK 57 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHH-------------------------HHHHHHTCS-HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHH-------------------------HHHHHHhCCCHHHHHH
Confidence 455555666666667777777777776555666666654 555444 334444777
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC
Q 048034 257 KYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYR 336 (558)
Q Consensus 257 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~ 336 (558)
+|+.+++.+|.+..+|......+...++.+.|..+|++++..-|.... .
T Consensus 58 Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~-------------------------------~ 106 (280)
T PF05843_consen 58 IFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQ-------------------------------S 106 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHH-------------------------------C
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhH-------------------------------H
Confidence 777777777777777777777777777777777777777665444320 1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhc
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMG 378 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 378 (558)
...|......-...|+.+....+.+++.+..|..........
T Consensus 107 ~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 107 KKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 246666667777778888888888787777776555444333
No 236
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.91 E-value=0.0075 Score=63.13 Aligned_cols=304 Identities=14% Similarity=-0.016 Sum_probs=165.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHH-HHHhhhcCHHH-------hhcCC---CCchHHHHHHHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWL-ELQSLCTTIDI-------LNSIN---LNNHWMKDFFLAST 244 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~-------~~~l~---~~~~~~~~~~~a~~ 244 (558)
+.++..-+.-+...|...+|+..--.+ .+|.-..... ..+.-+..... ++.++ ...+....+..+..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 567777777788888888888765544 2221111110 00000000000 01111 11122222334555
Q ss_pred HHHHhchHHHHHHHHHHHhhcCC---------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 245 YQELRMHNEALTKYEYLQGTFGF---------SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
....+++.+|..++.++...-+. ........|.+....|++++|+++.+.++..-|.+...
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~---------- 494 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR---------- 494 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------
Confidence 55566666666666665543222 01233334556666666666666666666655543221
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQA 395 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~ 395 (558)
........+|.+....|++++|..+.+.+.+....+...+. ...+.+..+.+
T Consensus 495 -------------------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l---------~~~~~~~~s~i 546 (894)
T COG2909 495 -------------------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL---------ALWSLLQQSEI 546 (894)
T ss_pred -------------------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH---------HHHHHHHHHHH
Confidence 23456778999999999999999999999887544332221 11244556778
Q ss_pred HHHcCC--HHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCc--HH-HHHHH
Q 048034 396 YEMMHM--PFYALHYFRKSV----FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN----DSE--AI-ALNQL 462 (558)
Q Consensus 396 ~~~~~~--~~~A~~~~~~a~----~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~----~~~--~~-~~~~l 462 (558)
+..+|+ +.+....|...- ...|-........+.++.. --+++.+..-..+.++.. |.. .. +++.+
T Consensus 547 l~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~--~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 547 LEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRA--WLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH--HHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 888883 333333333222 2233333333334444433 333566655555555442 222 22 34589
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 463 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA--LIFLATHCRAHNRFEDAEVYCTRL 523 (558)
Q Consensus 463 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~a 523 (558)
+.++...|+.++|...+......+.+.. . +.+..+ +.....+...+|+.++|.....+.
T Consensus 625 A~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~-~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 625 AELEFLRGDLDKALAQLDELERLLLNGQ-Y-HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCC-C-CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 9999999999999999999888664322 1 111222 222334456679999998888873
No 237
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00029 Score=61.83 Aligned_cols=82 Identities=15% Similarity=-0.010 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAK 535 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 535 (558)
...+.+++.|+...|++-++++.....+. ..|.+..+++..|.++...=+.++|..-|.++++++|.-.....
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~-------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILR-------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHh-------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 34788999999999999999999999998 78999999999999999999999999999999999987665555
Q ss_pred HHHHHHHHh
Q 048034 536 SMLRGMRMA 544 (558)
Q Consensus 536 ~ll~~~~~~ 544 (558)
.-++.+...
T Consensus 303 rElr~le~r 311 (329)
T KOG0545|consen 303 RELRLLENR 311 (329)
T ss_pred HHHHHHHHH
Confidence 555544443
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.84 E-value=0.011 Score=57.18 Aligned_cols=170 Identities=11% Similarity=0.086 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCCcchHHHHHHHHHh---cCCHhHHHHHHHH-HhhcCCCChhHHH
Q 048034 270 YLQAQIAKAQYSLREFEQVEVVFEELLRN----DPYRVEDMDMYSNVLYA---KECFSALSYLAHR-VFTTDKYRPESCC 341 (558)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~~---~~~~~~a~~l~~~-~~~~~~~~~~~~~ 341 (558)
.+...+-.+|....+|+.-+.+.+.+-.. -+........|+-.+.. .|+.++|..++.. +....+.++++++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444444455555555555555554443 23333444445555555 4555555555555 3344455677888
Q ss_pred HHHHHHhh---------cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 342 IIGNYYSL---------KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 342 ~lg~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
.+|.+|-. ....++|+..|.++..++|+.-. =.+++.++...|...+...-.++.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~----------------GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS----------------GINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc----------------hHHHHHHHHHcCCcccchHHHHHH
Confidence 88877753 22478999999999999976432 123444455555433322222221
Q ss_pred H--------h----cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 048034 413 V--------F----LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 413 ~--------~----~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 457 (558)
. + -.-.+......++.+..- .|++++|+..+++++.+.|....
T Consensus 286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL--~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVL--AGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHH--cCCHHHHHHHHHHHhhcCCcchh
Confidence 1 1 112234445667788888 99999999999999999877554
No 239
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=1.7e-05 Score=47.59 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=17.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHH
Q 048034 409 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 442 (558)
Q Consensus 409 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~ 442 (558)
|+++++++|+++.+|+++|.+|.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~--~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN--QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH--CcCHHhhc
Confidence 445555555555555555555555 55555543
No 240
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.83 E-value=0.035 Score=56.76 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=99.5
Q ss_pred HHHHHHHhchHHHHHHHHHH------Hhh----cCCChH-HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHH
Q 048034 242 ASTYQELRMHNEALTKYEYL------QGT----FGFSNY-LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYS 310 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~------~~~----~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (558)
|.++.+..++++|+++|.+- +++ +|.... +--.-|.-+...|+++.|+..|-++-.. ..-.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kai 739 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAI 739 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHH
Confidence 55566666777777776642 221 332211 2223467777889999999888665321 1112
Q ss_pred HHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 311 NVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 311 ~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
........+.++..++..+.... .....+-.++..|...|+|+.|.+.|.++-. ..
T Consensus 740 eaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----------------------~~ 795 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADL-----------------------FK 795 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcch-----------------------hH
Confidence 22334456777777766543332 3345566789999999999999999887622 11
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHH
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPND-SRLWIAMAQCYETEQLHMLEEAIKCY 445 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~~~~~~A~~~~ 445 (558)
.-..+|-+.|+|..|.+.-.+... |.. ...|...+.-+.. .|+|.+|...|
T Consensus 796 dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedlde--hgkf~eaeqly 847 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDE--HGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHh--hcchhhhhhee
Confidence 223566677888888776666542 332 2334444555555 66666665544
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.83 E-value=1.8e-05 Score=47.47 Aligned_cols=34 Identities=41% Similarity=0.514 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048034 444 CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 444 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 477 (558)
+|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.74 E-value=0.0012 Score=55.89 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=80.1
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPND----------------------SRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
...|......++...++..+++++.+...+ ..+...++..+.. .|++++|+..+++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE--AGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHH
Confidence 344566667889999999999999875321 1245567777888 9999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 448 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 448 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
++..+|.+..++..+..+|...|+..+|+..|+++...+.+..+..|.
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 999999999999999999999999999999999999988877666665
No 243
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.73 E-value=0.0017 Score=64.20 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=72.1
Q ss_pred HHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCH--HHHHHHHhhhcCHHHhhcC--------CCCch
Q 048034 165 LSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNW--NSWLELQSLCTTIDILNSI--------NLNNH 234 (558)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~l--------~~~~~ 234 (558)
+.......+.+..++.+-+.....+|+..+|..++..++...|... .+...|+.++...+..... ...+.
T Consensus 202 ~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~ 281 (886)
T KOG4507|consen 202 IHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADF 281 (886)
T ss_pred HHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence 3334445566777777777777889999999999999998877644 3345555554333221110 11111
Q ss_pred HH-HHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHH
Q 048034 235 WM-KDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQI 275 (558)
Q Consensus 235 ~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 275 (558)
+. ..+-++.++..++.+...+..|..+.+..|......-+.
T Consensus 282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~ 323 (886)
T KOG4507|consen 282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQR 323 (886)
T ss_pred ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHH
Confidence 11 134478999999999999999999988888665544443
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.71 E-value=5.2e-05 Score=45.71 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34556666666666666666666666666554
No 245
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.71 E-value=0.1 Score=55.54 Aligned_cols=128 Identities=17% Similarity=0.080 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH-----------------HHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL-----------------SAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
++..-|......+..++|.+++.++++.-.+.. ..|...- .....+.++......++
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l------~~~~~~y~~~~~~~~~~ 376 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYL------QCYLLFYQIWCNFIRGD 376 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHH------HHHHHHHHHHHHHHCcC
Confidence 344556667777888899999998876432211 1111111 12345567788888999
Q ss_pred HHHHHHHHHHHHhcC---CC------CHHHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCcHH---HHHH
Q 048034 402 PFYALHYFRKSVFLQ---PN------DSRLWIAMAQCYETEQLHMLEEAIKCYR--------RAANCNDSEAI---ALNQ 461 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~---p~------~~~~~~~la~~~~~~~~~~~~~A~~~~~--------~al~~~~~~~~---~~~~ 461 (558)
+..|....+.+.... |. .+.+++..|..+.. .|+.+.|...|. .+....+.... +..+
T Consensus 377 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~--~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LN 454 (608)
T PF10345_consen 377 WSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS--TGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALN 454 (608)
T ss_pred HHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH--cCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHH
Confidence 999999988777543 22 46778899999999 999999999998 44444443322 5566
Q ss_pred HHHHHHHcCCHHH
Q 048034 462 LAKLHHALGRDEE 474 (558)
Q Consensus 462 la~~~~~~g~~~~ 474 (558)
+..++...+....
T Consensus 455 l~~I~~~~~~~~~ 467 (608)
T PF10345_consen 455 LAIILQYESSRDD 467 (608)
T ss_pred HHHHhHhhcccch
Confidence 7777776665443
No 246
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.71 E-value=0.051 Score=52.91 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchH
Q 048034 156 RELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHW 235 (558)
Q Consensus 156 ~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 235 (558)
+++..+.+.+...+...|.+|....+.+.+....|.|+.|...+.-+-..-..-..+...+
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~------------------- 363 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCR------------------- 363 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHH-------------------
Confidence 4556666777777778899999999999999999999999988876644333222333222
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc
Q 048034 236 MKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV 303 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 303 (558)
-.....+|++++|...-..++...-.++++...-|......|-++++.-.+++++.++|...
T Consensus 364 ------~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 364 ------LRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred ------HHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 44567789999999999988887767788777777777788999999999999999887643
No 247
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.69 E-value=0.025 Score=55.75 Aligned_cols=136 Identities=21% Similarity=0.167 Sum_probs=104.4
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC-C----
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP----NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-ND-S---- 454 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-~~-~---- 454 (558)
....|...+.+..+.|+++.|...+.++...++ ..+.+....+.+... .|+..+|+..++..+.. .. .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~--~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA--QGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH--cCCHHHHHHHHHHHHHHHhhhccccc
Confidence 456799999999999999999999999988652 257788888999999 99999999999888771 10 0
Q ss_pred ----------------------------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhhhhcCCChHHHH
Q 048034 455 ----------------------------EAIALNQLAKLHHAL------GRDEEAAFYYKKDLERMEAEEREGPNMVEAL 500 (558)
Q Consensus 455 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 500 (558)
...++..+|...... +..+++...|.++++ ..|....++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~k~~ 295 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK-------LDPSWEKAW 295 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-------hChhHHHHH
Confidence 122566667766666 778888888888888 678888899
Q ss_pred HHHHHHHHHcCC-----------------HHHHHHHHHHHhccCCC
Q 048034 501 IFLATHCRAHNR-----------------FEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 501 ~~la~~~~~~g~-----------------~~~A~~~~~~al~~~~~ 529 (558)
+.+|..+...-+ ...|+..|-+++...+.
T Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 296 HSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 988887755421 13477788888877654
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.67 E-value=9.7e-05 Score=44.48 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCC
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWN 209 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (558)
|.+++.+|.++...|++++|+..|+++++++|.|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999975
No 249
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.066 Score=52.30 Aligned_cols=204 Identities=13% Similarity=0.071 Sum_probs=140.2
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCCh
Q 048034 274 QIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQH 353 (558)
Q Consensus 274 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 353 (558)
.++.|-.-.|++.+|++....+.+.....+.-... ....+..++.+|.+....+.+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Ll------------------------r~~~~~ih~LlGlys~sv~~~ 383 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLL------------------------RAHEAQIHMLLGLYSHSVNCY 383 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHH------------------------HHhHHHHHHHHhhHhhhcchH
Confidence 35666777899999998888777643332221100 112367889999999999999
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC----------HHHH
Q 048034 354 EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND----------SRLW 423 (558)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~----------~~~~ 423 (558)
+.|...|..|.++.....- | .-...+++.+|.+.|+-+.-.+.++. +.|.+ ..++
T Consensus 384 enAe~hf~~a~k~t~~~dl-~-----------a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~ 448 (629)
T KOG2300|consen 384 ENAEFHFIEATKLTESIDL-Q-----------AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASIL 448 (629)
T ss_pred HHHHHHHHHHHHhhhHHHH-H-----------HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHH
Confidence 9999999999987543211 1 12456789999998875554444443 34442 2356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 497 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 497 (558)
+..|...+. ++++.||...+.+.++..... ...+..++.+....|+..++.+...-++...++ .|+.+
T Consensus 449 ~v~glfaf~--qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK----i~Di~ 522 (629)
T KOG2300|consen 449 YVYGLFAFK--QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK----IPDIP 522 (629)
T ss_pred HHHHHHHHH--hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc----CCCch
Confidence 667777778 999999999999999876321 236777899999999999999998888886542 34443
Q ss_pred HHH---HHHHHHHHHcCC--HHHHHHHHHH
Q 048034 498 EAL---IFLATHCRAHNR--FEDAEVYCTR 522 (558)
Q Consensus 498 ~~~---~~la~~~~~~g~--~~~A~~~~~~ 522 (558)
..+ ..+-.++...|+ .+...+.|.+
T Consensus 523 vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 523 VQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 333 335677888888 5555555543
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.66 E-value=7.4e-05 Score=45.04 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCC
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWN 209 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (558)
+.+|+.+|.++..+|++++|+..|+++++++|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999964
No 251
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.65 E-value=0.067 Score=51.76 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=89.7
Q ss_pred HHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHH
Q 048034 198 VLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAK 277 (558)
Q Consensus 198 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~ 277 (558)
-++.-++-+|.|...|+.| ...+-.+|.+++-.+.|+++..-+|--+.+|...-.
T Consensus 30 rLRerIkdNPtnI~S~fqL-------------------------iq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s 84 (660)
T COG5107 30 RLRERIKDNPTNILSYFQL-------------------------IQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMS 84 (660)
T ss_pred HHHHHhhcCchhHHHHHHH-------------------------HHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhc
Confidence 4566778889999999888 666777788888888888888888877777766555
Q ss_pred HHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC---------CHhHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 048034 278 AQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE---------CFSALSYLAHRVFTTDKYRPESCCIIGNYYS 348 (558)
Q Consensus 278 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~---------~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~ 348 (558)
.-....+|.....+|.+++...- +.+.+..+.......+ ..-+|..+.-.+.-.+|.....|...+....
T Consensus 85 ~ELA~~df~svE~lf~rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle 163 (660)
T COG5107 85 GELARKDFRSVESLFGRCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE 163 (660)
T ss_pred chhhhhhHHHHHHHHHHHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 55556778888888888776432 2444433333222221 1223333444455566776667766666544
Q ss_pred h---------cCChHHHHHHHHHHHccC
Q 048034 349 L---------KGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 349 ~---------~~~~~~A~~~~~~al~~~ 367 (558)
. +.+.+.-...|.+|+..-
T Consensus 164 ~~~~~~kwEeQqrid~iR~~Y~ral~tP 191 (660)
T COG5107 164 YIEELGKWEEQQRIDKIRNGYMRALQTP 191 (660)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHcCc
Confidence 2 233344555666666543
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.64 E-value=9.5e-05 Score=44.53 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNY 370 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (558)
+.+|+.+|.++...|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4688999999999999999999999999999974
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.64 E-value=0.07 Score=51.64 Aligned_cols=353 Identities=12% Similarity=0.068 Sum_probs=210.0
Q ss_pred HHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH---hhcC-------CC-C
Q 048034 164 ELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI---LNSI-------NL-N 232 (558)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~l-------~~-~ 232 (558)
.|...++.+|.|...||.+-..+..+|.+++-.+.|++...-+|.-..+|....+--...++ ++.+ .+ -
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 46666777899999999999999999999999999999999999999999765432111111 1111 01 2
Q ss_pred chHHHHHHHHHHHHHHhc------h-HHHHHHHHHHHh---hcCCChHHHHHHHHHHHH---------cccHHHHHHHHH
Q 048034 233 NHWMKDFFLASTYQELRM------H-NEALTKYEYLQG---TFGFSNYLQAQIAKAQYS---------LREFEQVEVVFE 293 (558)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~------~-~~A~~~~~~~~~---~~p~~~~~~~~~a~~~~~---------~~~~~~A~~~~~ 293 (558)
+-|+..+ -|.+.-+ - ..-.+.|+-.+. ..|.+...|...+..+.. +.+.+.-...|.
T Consensus 110 dLW~lYl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 110 DLWMLYL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hHHHHHH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 3343221 1222211 1 111123333333 567777788777766543 345666777888
Q ss_pred HHHHcCCCCcchHH-HH-------------------------HHHH----------------------------------
Q 048034 294 ELLRNDPYRVEDMD-MY-------------------------SNVL---------------------------------- 313 (558)
Q Consensus 294 ~~l~~~p~~~~~~~-~~-------------------------~~~l---------------------------------- 313 (558)
+++..--++.+-+. .+ +...
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 88864333321110 00 0000
Q ss_pred ----Hhc-------CC--HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchh
Q 048034 314 ----YAK-------EC--FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHE 380 (558)
Q Consensus 314 ----~~~-------~~--~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 380 (558)
+.+ ++ ..........++.--+..++.|+....+....++-++|+...++++...|.- ...++..
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL---~~~lse~ 342 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL---TMFLSEY 342 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch---heeHHHH
Confidence 000 00 0122223344555567778888888888888899999999888888777761 1111111
Q ss_pred cc-------------------------------------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 381 YK-------------------------------------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 381 ~~-------------------------------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
+. ..-.-+|+.+-..-.+..-.+.|...|.+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11 00111222222233333344556666666
Q ss_pred HHhcCCCCHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 412 SVFLQPNDSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
+-+..-....++..-|.+ +.. .|++.-|...|+-.+...|+++......-..+...++-+.|...|++++..+..
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~--~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~-- 498 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYA--TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK-- 498 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHh--cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH--
Confidence 544331222222222222 223 688888888888888888888887777778888889999999999988886532
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 048034 491 REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 491 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
.....+|-.+-..-..-|+...+...=++..+.-|..
T Consensus 499 ---~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 499 ---TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred ---hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 2334566666777777788888887777777766543
No 254
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.63 E-value=8e-05 Score=72.06 Aligned_cols=108 Identities=16% Similarity=0.046 Sum_probs=99.3
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 470 (558)
.-+...+.-+.++.|+..|.+|++++|+++..+.+.+..+.+ .+.+..|+..+.+|++.+|....+++..|......+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK--~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK--VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee--echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 456667788999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 471 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
.+.+|...|++... ..|+.+.+...+..|-
T Consensus 87 ~~~~A~~~l~~~~~-------l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK-------LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhh-------cCcCcHHHHHHHHHHH
Confidence 99999999999988 6788888877776654
No 255
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.61 E-value=0.05 Score=52.09 Aligned_cols=166 Identities=19% Similarity=0.168 Sum_probs=120.0
Q ss_pred hHHHHHHHHHhh----cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH----cCCHHHHHHHH
Q 048034 338 ESCCIIGNYYSL----KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM----MHMPFYALHYF 409 (558)
Q Consensus 338 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~ 409 (558)
.....++..|.. ..+..+|+.+|+.+... . ++.+.+.||.+|.. ..+..+|..+|
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--g---------------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~ 136 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--G---------------LAEALFNLGLMYANGRGVPLDLVKALKYY 136 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--c---------------cHHHHHhHHHHHhcCCCcccCHHHHHHHH
Confidence 455666666653 34578899988855443 2 33456677777766 44889999999
Q ss_pred HHHHhcCCCC-HHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 048034 410 RKSVFLQPND-SRLWIAMAQCYETEQLH-------MLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEAAF 477 (558)
Q Consensus 410 ~~a~~~~p~~-~~~~~~la~~~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 477 (558)
++|....... ..+...+|.+|.. -. +...|...|.++-... ++.+.+.+|.+|.. ..++.+|..
T Consensus 137 ~~Aa~~g~~~a~~~~~~l~~~~~~--g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~ 212 (292)
T COG0790 137 EKAAKLGNVEAALAMYRLGLAYLS--GLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFR 212 (292)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHc--ChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 9998875444 3457888888876 31 3347888888887766 67788889988865 347899999
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhccCCCcHHHH
Q 048034 478 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHN---------------RFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 478 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
+|.++.+ ... ..+.+.++ ++...| +...|..++.++....++.....
T Consensus 213 wy~~Aa~-------~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 274 (292)
T COG0790 213 WYKKAAE-------QGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEA 274 (292)
T ss_pred HHHHHHH-------CCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHH
Confidence 9999998 233 78888888 776666 88899999999988765554444
No 256
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.012 Score=52.72 Aligned_cols=212 Identities=12% Similarity=0.027 Sum_probs=156.2
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh-HH
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL-REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS-AL 322 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~-~a 322 (558)
+.+...-..|+++...++..+|.+-.+|...-.++..+ .+..+-++++.++++.+|.+-..+...-.+.-..|+.. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 44556778999999999999999988887776666665 46788889999999999999999998888888888777 67
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCH
Q 048034 323 SYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402 (558)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 402 (558)
......++..+..+-.+|...-.+...-+.++.-+.+..+.++.+-.+.++|...-.... ...|.+ ..-..
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~-------~~~~~~--~~~~l 203 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVIT-------NTKGVI--SKAEL 203 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEE-------eccCCc--cHHHH
Confidence 778888999999999999999999999999999999999999999887777754321111 001100 11123
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHH-hcCCCcHHHHHHHHHHH
Q 048034 403 FYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH--MLEEAIKCYRRAA-NCNDSEAIALNQLAKLH 466 (558)
Q Consensus 403 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~--~~~~A~~~~~~al-~~~~~~~~~~~~la~~~ 466 (558)
+.-+.+..+.+.+.|++..+|+.|..++..+ .| .+.+-.......+ ......|..+-.+..+|
T Consensus 204 e~El~yt~~~I~~vP~NeSaWnYL~G~l~~d-~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 204 ERELNYTKDKILLVPNNESAWNYLKGLLELD-SGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhc-cCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 4557788889999999999999998888740 23 2333344443333 33344555555555555
No 257
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.60 E-value=0.15 Score=54.31 Aligned_cols=282 Identities=10% Similarity=0.001 Sum_probs=173.4
Q ss_pred chHHHHHHHHHHH-hcCChHHHHHHHHHHhhhCCC--CHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 175 DPFILYLYGLVLK-DKGSENLARTVLVESVNSYPW--NWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 175 ~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
+..+.+.+|.++. ...++++|..++.+++.+... ..+..+. ..+.++.++.+.+..
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~---------------------~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR---------------------CQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH---------------------HHHHHHHHHHhcCHH
Confidence 4568899999987 789999999999999876643 2222222 234568888888777
Q ss_pred HHHHHHHHHHHhhcCC---ChHHH-HHH--HHHHHHcccHHHHHHHHHHHHHcCC--CCcchHHHHHHHHHhcCCHhHHH
Q 048034 252 NEALTKYEYLQGTFGF---SNYLQ-AQI--AKAQYSLREFEQVEVVFEELLRNDP--YRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~---~~~~~-~~~--a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
. |+..+++.++.... ..+.+ +.+ +......+++..|++.++.+..... .+....
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~----------------- 178 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF----------------- 178 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH-----------------
Confidence 7 99999998885433 33322 222 3333334799999999998887542 221111
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHcc------CcCCHHHHHHhchhccccchHHHHHhHH--H
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL------NKNYLSAWTLMGHEYKSIDYRAWYGLGQ--A 395 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~lg~--~ 395 (558)
.......+.+....+..+++++..+++... +|+. . +....+|..+-+ +
T Consensus 179 -------------v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~----------~~qL~~~~lll~l~~ 234 (608)
T PF10345_consen 179 -------------VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV-H----------IPQLKALFLLLDLCC 234 (608)
T ss_pred -------------HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-C----------cHHHHHHHHHHHHHH
Confidence 122334466666777777788877777432 2221 0 111223444333 3
Q ss_pred HHHcCCHHHHHHHHHHH---Hh---cCC---C---C-----------------H-------------HHHHHHHHHHHHH
Q 048034 396 YEMMHMPFYALHYFRKS---VF---LQP---N---D-----------------S-------------RLWIAMAQCYETE 433 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a---~~---~~p---~---~-----------------~-------------~~~~~la~~~~~~ 433 (558)
+...|+++.+...+++. +. ..+ . + + -++..-|.+...
T Consensus 235 ~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~- 313 (608)
T PF10345_consen 235 SLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLY- 313 (608)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhh-
Confidence 44566666555544332 21 111 0 0 0 122333555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCC----------c----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 048034 434 QLHMLEEAIKCYRRAANCNDS----------E----------------AIALNQLAKLHHALGRDEEAAFYYKKDLERME 487 (558)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~~~----------~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 487 (558)
.+..++|.+++.++++.-.+ . ....+..+.+..-.+++..|....+.+.....
T Consensus 314 -~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~ 392 (608)
T PF10345_consen 314 -KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQ 392 (608)
T ss_pred -ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 67777888888887654111 0 01445567777889999999999988887543
Q ss_pred hhhh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 488 AEER--EGPNMVEALIFLATHCRAHNRFEDAEVYCT 521 (558)
Q Consensus 488 ~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 521 (558)
+... .....+..++..|..+...|+.+.|..+|.
T Consensus 393 ~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 393 RSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred cCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 2211 122357788889999999999999999998
No 258
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.50 E-value=0.037 Score=57.82 Aligned_cols=263 Identities=12% Similarity=0.053 Sum_probs=175.7
Q ss_pred CCchHHHHHHHHHHHhc-----CChHHHHHHHHHHhhh-----CCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHH
Q 048034 173 TMDPFILYLYGLVLKDK-----GSENLARTVLVESVNS-----YPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLA 242 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (558)
..+....+.+|.++..- .|.+.|+.+|+.+... .-.+..+...+ |
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l-------------------------g 295 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL-------------------------G 295 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH-------------------------H
Confidence 45677788888888654 6899999999999772 00012222233 6
Q ss_pred HHHHHHh-----chHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc---cHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 243 STYQELR-----MHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR---EFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 243 ~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
.+|.+.. +...|+..|.++.+. .++...+.+|.++..-. ++..|..+|..+... .+..++..++.++.
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE 371 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence 6666643 677899999998876 45677778888888765 678999999999764 45667777777765
Q ss_pred hc----CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc-CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHH
Q 048034 315 AK----ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK-GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAW 389 (558)
Q Consensus 315 ~~----~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 389 (558)
.- .+...+..++.++.... ++.+...++.++..- +.++.+...+.....+.-..... +....
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~-----------~a~~l 438 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS-----------NAAYL 438 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh-----------HHHHH
Confidence 43 56778888888887777 556666666655433 77777666655544433221110 00011
Q ss_pred HHhHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCcHHHHHH
Q 048034 390 YGLGQAYEM----MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL----HMLEEAIKCYRRAANCNDSEAIALNQ 461 (558)
Q Consensus 390 ~~lg~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~ 461 (558)
......... ..+...+...+.++.. ..++.+...+|.+|.. . .+++.|...|.++.... ....++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~--g~g~~~d~~~a~~~y~~a~~~~---~~~~~n 511 (552)
T KOG1550|consen 439 LDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYY--GLGTGRDPEKAAAQYARASEQG---AQALFN 511 (552)
T ss_pred HHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeee--cCCCCCChHHHHHHHHHHHHhh---hHHHhh
Confidence 111111111 2255667777776654 4577788899999886 3 35999999999998876 889999
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHH
Q 048034 462 LAKLHHAL---GRDEEAAFYYKKDLE 484 (558)
Q Consensus 462 la~~~~~~---g~~~~A~~~~~~al~ 484 (558)
+|.++..- .....|..+|.++.+
T Consensus 512 lg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 512 LGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred hhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 99998752 126888888888876
No 259
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.17 Score=59.00 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHh---cC----CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 402 PFYALHYFRKSVF---LQ----PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 402 ~~~A~~~~~~a~~---~~----p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
..+-+-.+++++- .+ ..-.+.|...|.+... .|+++.|....-+|.+.. -+.+....|..+...|+...
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~--aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL--AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh--cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHH
Confidence 4444555555432 23 3346889999999999 999999999999998876 56789999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcC----CC------hHHHHHHHHHHHHHcCCH--HHHHHHHHHHhccCC
Q 048034 475 AAFYYKKDLERMEAEEREG----PN------MVEALIFLATHCRAHNRF--EDAEVYCTRLLDYTG 528 (558)
Q Consensus 475 A~~~~~~al~~~~~~~~~~----~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~ 528 (558)
|+.++++.++......... |. ...+.+.++......|++ .+-+++|+.+.+..|
T Consensus 1721 Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred HHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 9999999997543221000 11 123455566666667765 356778888888876
No 260
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.49 E-value=0.00018 Score=69.68 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=97.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 048034 342 IIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 342 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
.-++-.+.-++|+.|+..|.+|++++|++.. .+-..+.++.+.+++..|+.-+.+|++.+|....
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~---------------~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K 73 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAI---------------YFANRALAHLKVESFGGALHDALKAIELDPTYIK 73 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCccee---------------eechhhhhheeechhhhHHHHHHhhhhcCchhhh
Confidence 4567778889999999999999999998653 4556678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
.|+..|.+... .+++.+|...|++...+.|+++.+...+..+-.
T Consensus 74 ~Y~rrg~a~m~--l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 74 AYVRRGTAVMA--LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred eeeeccHHHHh--HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999998877766643
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0062 Score=55.75 Aligned_cols=127 Identities=12% Similarity=0.109 Sum_probs=96.4
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc-chHHHHHHHHHhcCCHh
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV-EDMDMYSNVLYAKECFS 320 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~l~~~~~~~ 320 (558)
+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+..+-....... ..+......+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 66778899999999999999999999999999999999999999999888776533222211 11111112333333333
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcC
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKN 369 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 369 (558)
+... +++.+..+|++.+.-+.++..+...|+.+.|.+.+-..++.+..
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3322 34456789999999999999999999999999999999888765
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.013 Score=53.77 Aligned_cols=173 Identities=14% Similarity=-0.003 Sum_probs=111.8
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHH
Q 048034 160 SLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDF 239 (558)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 239 (558)
.+.+.|++... ..-..-+..|.-....|++.+|...|..++...|.+.++...+
T Consensus 121 qlr~~ld~~~~---~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~l----------------------- 174 (304)
T COG3118 121 QLRQFLDKVLP---AEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLL----------------------- 174 (304)
T ss_pred HHHHHHHHhcC---hHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHH-----------------------
Confidence 34444444432 2344566677888899999999999999999999998888887
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHhhcCCChHHH-HHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 240 FLASTYQELRMHNEALTKYEYLQGTFGFSNYLQ-AQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 240 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
+.++...|+.+.|...+..+-.......... ......+.+.....+. ..+++.+..+|++.+....++..+...|+
T Consensus 175 --a~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~ 251 (304)
T COG3118 175 --AECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR 251 (304)
T ss_pred --HHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888887776544333322222 1111233333333322 23455566788888888888888888888
Q ss_pred HhHHHHHHHHHhhcCCC--ChhHHHHHHHHHhhcCChHHHHHHHH
Q 048034 319 FSALSYLAHRVFTTDKY--RPESCCIIGNYYSLKGQHEKSVVYFR 361 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~ 361 (558)
.+.|...+-..+..+.. +..+...+-.++...|.-+.+...++
T Consensus 252 ~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 252 NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88888777776665543 45555555555555554444444333
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.44 E-value=0.088 Score=51.91 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=94.5
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
.......|...+.+....|.++.|...+.++...++.... ..+.+.+..+......|+..+|+..++..
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-----------~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-----------LLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-----------CCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445678889999999999999999999999887643211 13346677788888999999999988877
Q ss_pred HhcC-C-C--------------------------------CHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcC
Q 048034 413 VFLQ-P-N--------------------------------DSRLWIAMAQCYETEQL------HMLEEAIKCYRRAANCN 452 (558)
Q Consensus 413 ~~~~-p-~--------------------------------~~~~~~~la~~~~~~~~------~~~~~A~~~~~~al~~~ 452 (558)
+... . . .+.++..+|..... . +..++++..|.++++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~--~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE--LYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh--hccccccccHHHHHHHHHHHHHhC
Confidence 7611 0 0 12345566666666 6 88999999999999999
Q ss_pred CCcHHHHHHHHHHHHHc
Q 048034 453 DSEAIALNQLAKLHHAL 469 (558)
Q Consensus 453 ~~~~~~~~~la~~~~~~ 469 (558)
|....+|+.+|..+...
T Consensus 289 ~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 289 PSWEKAWHSWALFNDKL 305 (352)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999999887764
No 264
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0014 Score=57.76 Aligned_cols=96 Identities=19% Similarity=0.156 Sum_probs=86.0
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFL--------QPNDS----------RLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~p~~~----------~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
.+...-|+-++..|+|.+|...|+.|+.. .|.++ ..+.+++.|+.. .|+|-++++.....
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~--~~e~yevleh~sei 256 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK--KEEYYEVLEHCSEI 256 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh--HHHHHHHHHHHHHH
Confidence 35667889999999999999999998743 45443 467889999999 99999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 449 ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 449 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+...|.+..+++..|......=+..+|...|.++++
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998
No 265
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.006 Score=56.41 Aligned_cols=105 Identities=15% Similarity=-0.137 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
+.-+---|+-|++.++|..|+..|.+.|...-.+.+....| +.+++-+.+..|+|..|+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavL---------------------Y~NRAAa~~~l~NyRs~l 139 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVL---------------------YTNRAAAQLYLGNYRSAL 139 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHH---------------------HhhHHHHHHHHHHHHHHH
Confidence 44566679999999999999999999998776666555444 456799999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Q 048034 256 TKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPY 301 (558)
Q Consensus 256 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 301 (558)
.-+.+++...|.+..+++.-|.|++.+.++.+|..+.+..+.++-.
T Consensus 140 ~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 140 NDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999999999999999999999999999876644
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.42 E-value=0.052 Score=51.38 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=112.2
Q ss_pred HHhcCChHHHHHHHHHHhhhC-CCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHh-chHHHHHHHHHHHh
Q 048034 186 LKDKGSENLARTVLVESVNSY-PWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELR-MHNEALTKYEYLQG 263 (558)
Q Consensus 186 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~ 263 (558)
..++|+.+.|..++.++-... ..++.....|+..+ |+.|......+ +++.|...++++.+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~------------------yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC------------------YNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH------------------HHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 357899999999999997766 55556666665444 55688888888 99999999999887
Q ss_pred hc----C---CC-------hHHHHHHHHHHHHcccHH---HHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 048034 264 TF----G---FS-------NYLQAQIAKAQYSLREFE---QVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLA 326 (558)
Q Consensus 264 ~~----p---~~-------~~~~~~~a~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~ 326 (558)
.. + .. ..++..++.++...+.++ +|....+.+-...|+.+......-.++...++.+.+...+
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L 144 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEIL 144 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHH
Confidence 62 1 11 125667888888877654 5666666776777888877767777777788899999999
Q ss_pred HHHhhcCCCChhHHHHHHHHH--hhcCChHHHHHHHHHHHcc
Q 048034 327 HRVFTTDKYRPESCCIIGNYY--SLKGQHEKSVVYFRRALKL 366 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~ 366 (558)
.+++..-+.....+..+...+ ........|...+...+..
T Consensus 145 ~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 145 MRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 888877653222222222222 2234456677777776653
No 267
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.22 Score=53.21 Aligned_cols=290 Identities=10% Similarity=0.002 Sum_probs=174.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH----hhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 183 GLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI----LNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 183 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
|.+....+-+++|...|++- ..+..+..-|..-+...+. ....+.|.-|... |.+.++.|...+|++.|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf----~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsql---akAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF----DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQL---AKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh----cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHH---HHHHHhcCchHHHHHHH
Confidence 44555556667777666542 3345555555433332222 2333445555433 77777788888888777
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChh
Q 048034 259 EYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPE 338 (558)
Q Consensus 259 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~ 338 (558)
-++ +++..+.....+..+.|.|++-+.++.-+.+.-.. +..-..+...+...++..+....+. .|+.+
T Consensus 1128 ika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi~-----gpN~A- 1195 (1666)
T KOG0985|consen 1128 IKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFIA-----GPNVA- 1195 (1666)
T ss_pred Hhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHhc-----CCCch-
Confidence 665 45666667777777888888888877776654221 1222233344455555555544332 23322
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC-
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP- 417 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p- 417 (558)
-.-.+|+-.+..|.|+.|.-.|... .-|-.|+..+..+|+|.-|...-++|-...-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~v-----------------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNV-----------------------SNFAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHh-----------------------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 2345777778888888887766543 2467888888999999999888877643211
Q ss_pred ----------C--------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 048034 418 ----------N--------------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDE 473 (558)
Q Consensus 418 ----------~--------------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 473 (558)
. .+.-+-.+...|.. .|-+++-+..++.++.+...+-..+..+|.+|.+- +++
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~--rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~ 1329 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQD--RGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPE 1329 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHh--cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHH
Confidence 0 12234455666777 89999999999999988777777788888888764 344
Q ss_pred HHHHHHHHHHHHH--HhhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 048034 474 EAAFYYKKDLERM--EAEEREGPNMVEALIFLATHCRAHNRFEDAEV 518 (558)
Q Consensus 474 ~A~~~~~~al~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 518 (558)
+-.+.++-.-... ++.. ...+....|..+..+|.+-..|+.|.-
T Consensus 1330 km~EHl~LFwsRvNipKvi-RA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1330 KMMEHLKLFWSRVNIPKVI-RAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4444443322211 0000 011224455667777777777776653
No 268
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.37 E-value=0.021 Score=55.24 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=118.7
Q ss_pred HHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHH--HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 048034 358 VYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQ--AYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL 435 (558)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~--~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 435 (558)
.-|.+.++.+|.+..+|..+..... .....+. .-....-.+.-+.+|++|++.+|++...+..+-.+..+ .
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd-----~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~--~ 78 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQD-----ELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK--V 78 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHH-----HhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--h
Confidence 4567888889998887765552110 0000000 11112234567889999999999999999999999988 9
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhhhhcC-----------CChHHHHH
Q 048034 436 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA---LGRDEEAAFYYKKDLERMEAEEREG-----------PNMVEALI 501 (558)
Q Consensus 436 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~ 501 (558)
...++..+-+++++..+|++...|...-..... .-.+......|.+++..+....... .....++.
T Consensus 79 ~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 999999999999999999999888766555443 3358899999999998776543221 12344556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 502 FLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 502 ~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.+.....+.|-.+.|+..++-.++++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 67888899999999999999999865
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.35 E-value=0.069 Score=55.87 Aligned_cols=172 Identities=14% Similarity=0.115 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHc-----CCCCcchHHHHHHHHHhcC---
Q 048034 251 HNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL-----REFEQVEVVFEELLRN-----DPYRVEDMDMYSNVLYAKE--- 317 (558)
Q Consensus 251 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~--- 317 (558)
...|...++.+... .+......+|.+++.- .|.+.|+.+|+.+.+. ....+.+...++.++....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45667777776654 4566667777777654 5788888888888661 1114456667777777642
Q ss_pred --CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcC---ChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHh
Q 048034 318 --CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKG---QHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 318 --~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
+...+..++.++... .++...+.+|.++..-. +...|..+|..|.+.. +..+.+.+
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-----------------~~~A~~~l 366 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-----------------HILAIYRL 366 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----------------ChHHHHHH
Confidence 455566666665444 34567777888877655 5678888888887643 33456666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048034 393 GQAYEM----MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 446 (558)
Q Consensus 393 g~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~ 446 (558)
+.+|.. ..+...|..+|.++.+.. .+.+...++..+... .++++.+...+.
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g-~~~~~~~~~~~~ 421 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYG-VGRYDTALALYL 421 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHc-cccccHHHHHHH
Confidence 666653 346778888888888776 444445555554430 244444444443
No 270
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.33 E-value=0.02 Score=56.00 Aligned_cols=156 Identities=14% Similarity=0.049 Sum_probs=109.1
Q ss_pred hhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHH-------Hhchhcc-------ccchHHHHHhHHH
Q 048034 330 FTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWT-------LMGHEYK-------SIDYRAWYGLGQA 395 (558)
Q Consensus 330 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------~~~~~~~-------~~~~~~~~~lg~~ 395 (558)
+..+|...+++..++.++..+|+++.|.+..++|+-.........+ .-|.+.. ..-+.+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4678888888888999999999988888888888643221111111 1111211 2234566677888
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHH
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPN-DSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCND-----SEAIALNQLAKLHHA 468 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~-~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~ 468 (558)
+.+.|-+..|+++.+-.+.++|. ||-........ ..+ .++++--+..++....... .-|..-+..+.++..
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr--s~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR--SRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh--cCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 89999999999999999999999 77654444444 445 7888877777776555211 123567778888888
Q ss_pred cCCH---------------HHHHHHHHHHHHHHH
Q 048034 469 LGRD---------------EEAAFYYKKDLERME 487 (558)
Q Consensus 469 ~g~~---------------~~A~~~~~~al~~~~ 487 (558)
.++. ++|...+.+++..++
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 8888 899999999887554
No 271
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.072 Score=47.87 Aligned_cols=250 Identities=11% Similarity=0.039 Sum_probs=170.9
Q ss_pred hchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc-CCHhHHHHHHH
Q 048034 249 RMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK-ECFSALSYLAH 327 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~-~~~~~a~~l~~ 327 (558)
.+|.++..+|+.++..+.. -..|+.+-..++..+|.+-..+...-.++..+ .+..+-...+.
T Consensus 40 e~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456666666665554443 45567788889999999998888888887776 44667778889
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChH-HHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHE-KSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
+++..+|.+-.+|...-.+....|++. .-+++.+.++..+.+ ++.+|...-.+....+.++.-+
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaK---------------NYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAK---------------NYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhcccc---------------chhhhHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999888 888899999998877 4456666667777788899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC--CHHHHHHHH
Q 048034 407 HYFRKSVFLQPNDSRLWIAMAQCYETE----QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA-LG--RDEEAAFYY 479 (558)
Q Consensus 407 ~~~~~a~~~~p~~~~~~~~la~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~ 479 (558)
.+..+.++.+-.+-.+|+..--+.... ..-..+.-+.+..+.+.+.|++..+|..|.-++.. .| ...+-....
T Consensus 168 ~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~ 247 (318)
T KOG0530|consen 168 AYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFV 247 (318)
T ss_pred HHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHH
Confidence 999999988776666665432221110 01223455677788899999999999999888886 44 122333333
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHHHHHH------HcCCHH---HHHHHHHHHh-ccCCCcHHHHHH
Q 048034 480 KKDLERMEAEEREGPNMVEALIFLATHCR------AHNRFE---DAEVYCTRLL-DYTGPEKETAKS 536 (558)
Q Consensus 480 ~~al~~~~~~~~~~~~~~~~~~~la~~~~------~~g~~~---~A~~~~~~al-~~~~~~~~~~~~ 536 (558)
...+. ......+..+..+...|. +.+.-+ +|...|+..- +.+|....-+.-
T Consensus 248 ~~l~~------~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 248 ENLYL------QLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred HHHhh------ccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 33221 133444555555666552 223333 5666676655 677665555533
No 272
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.30 E-value=0.02 Score=44.48 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
|..|+..-.+.+-|-|++|...++++...... +..++-.|+..+..+|+|++++..-++++..+...+
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence 44444333322268899999999988876322 234777899999999999999999999999998888
Q ss_pred hcCCChHHHHH----HHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 491 REGPNMVEALI----FLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 491 ~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
..+.+....|. ..|..+...|+.++|+..|+++-+.
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 77777766654 4688889999999999999998753
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.037 Score=47.53 Aligned_cols=113 Identities=14% Similarity=0.037 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCCCHH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHH
Q 048034 405 ALHYFRKSVFLQPNDSR---LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFY 478 (558)
Q Consensus 405 A~~~~~~a~~~~p~~~~---~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~ 478 (558)
.....++....++.+.. .-..++..+.. .|++++|+..++.++....+. ..+-.++|.+...+|.+++|+..
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve--~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVE--ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33344444444444332 34567788888 999999999999998654333 23678899999999999999998
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 479 YKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 479 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
++.... ..-.+..-...|+++...|+.++|+..|+++++.+
T Consensus 149 L~t~~~--------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 149 LDTIKE--------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred Hhcccc--------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 876544 11123344557999999999999999999999975
No 274
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.21 E-value=0.12 Score=54.59 Aligned_cols=209 Identities=16% Similarity=0.014 Sum_probs=127.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhcCCC---------ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHH
Q 048034 305 DMDMYSNVLYAKECFSALSYLAHRVFTTDKY---------RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWT 375 (558)
Q Consensus 305 ~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 375 (558)
.....+..+....++.++..++.++...-+. .++..-..|.+....|++++|+++.+.++..-|.....
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~-- 494 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR-- 494 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch--
Confidence 3344444444445555555555444332222 12444567888889999999999999999988775442
Q ss_pred HhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHH--HHHHHHHHHHHhcCC--HHHHHHHHHH
Q 048034 376 LMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP----NDSRL--WIAMAQCYETEQLHM--LEEAIKCYRR 447 (558)
Q Consensus 376 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~--~~~la~~~~~~~~~~--~~~A~~~~~~ 447 (558)
....+...+|.+....|++++|..+.+++.+... ..-.+ ....+.++.. +|+ +.+....|..
T Consensus 495 --------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~--qGq~~~a~~~~~~~~ 564 (894)
T COG2909 495 --------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA--QGQVARAEQEKAFNL 564 (894)
T ss_pred --------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHH
Confidence 2334677899999999999999999999887632 22223 3445777777 883 3333333433
Q ss_pred HH----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 448 AA----NCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV-EALIFLATHCRAHNRFEDAEVYCTR 522 (558)
Q Consensus 448 al----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 522 (558)
.- ...|.........+.++...-+++.+..-..+.++...... ..+... .+++.||.+++..|++++|......
T Consensus 565 ~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 565 IREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22 22344333333344444333336666666666665332221 122222 2335799999999999999999888
Q ss_pred Hhcc
Q 048034 523 LLDY 526 (558)
Q Consensus 523 al~~ 526 (558)
+..+
T Consensus 644 ~~~l 647 (894)
T COG2909 644 LERL 647 (894)
T ss_pred HHHH
Confidence 7653
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.18 E-value=0.00058 Score=41.03 Aligned_cols=31 Identities=42% Similarity=0.667 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
.+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566666666666666666666666666655
No 276
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.29 Score=48.31 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHH
Q 048034 194 LARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQA 273 (558)
Q Consensus 194 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 273 (558)
.-...|+.++..++.+...|... .....+.+.+.+--..|.+++..+|+++.+|.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~y-------------------------i~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI 143 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSY-------------------------IAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWI 143 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHH-------------------------HHHHHHhcchhHHHHHHHHHHHhCCCCchhHH
Confidence 34577889999999998888775 44445555588889999999999999999999
Q ss_pred HHHHHHHHccc-HHHHHHHHHHHHHcCCCCcchHHHHHH
Q 048034 274 QIAKAQYSLRE-FEQVEVVFEELLRNDPYRVEDMDMYSN 311 (558)
Q Consensus 274 ~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (558)
.-|.-.+..+. .+.|..+|.+.++.+|+.+..+..+-.
T Consensus 144 ~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 144 YAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 99988888776 999999999999999999887765543
No 277
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.0062 Score=51.42 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=76.9
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHccCcCCHH------HHHHhchhcc-ccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 341 CIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS------AWTLMGHEYK-SIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 341 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
...|......++.+.++..+++++.+.....- .|..-..... .....+...++..+...|++++|+..+++++
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 89 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL 89 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34455666778899999999999987533210 1111110000 1223456678888999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
..+|.+-.+|..+..+|.. .|+..+|+..|++...
T Consensus 90 ~~dP~~E~~~~~lm~~~~~--~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAA--QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999998754
No 278
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.11 E-value=0.00045 Score=63.92 Aligned_cols=88 Identities=20% Similarity=0.077 Sum_probs=81.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
-....|.++.|+..|..++.++|....++...+.++.+ +++...|++.+..++.++|+...-+-..+.....+|++++
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk--l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK--LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeee--ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34456889999999999999999999999999999999 9999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHH
Q 048034 475 AAFYYKKDLE 484 (558)
Q Consensus 475 A~~~~~~al~ 484 (558)
|...+..+.+
T Consensus 201 aa~dl~~a~k 210 (377)
T KOG1308|consen 201 AAHDLALACK 210 (377)
T ss_pred HHHHHHHHHh
Confidence 9999999988
No 279
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0041 Score=57.47 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
+..+-.-|+-|+..++|..|+.+|.+.++..-.+... +...|.+.+-+....|+|..|+.-..+++.++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-----------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-----------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556667899999999999999999999876555443 44567888888888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 454 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~ 454 (558)
|.+..+++.-|.|+.. +.++.+|..+++..+.++..
T Consensus 150 P~h~Ka~~R~Akc~~e--Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLE--LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred cchhhhhhhhhHHHHH--HHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999998 99988888888887766543
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.11 E-value=0.00074 Score=40.52 Aligned_cols=32 Identities=34% Similarity=0.633 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKN 369 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 369 (558)
.+|+.+|.+|...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999985
No 281
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.07 E-value=0.034 Score=50.03 Aligned_cols=223 Identities=14% Similarity=0.108 Sum_probs=126.0
Q ss_pred HhchHHHHHHHHHHHhhcCCChH----HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGFSNY----LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
....++|+..|+++++..+...+ ++-++..+.+.+++|++-...|.+++..-..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS---------------------- 97 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS---------------------- 97 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----------------------
Confidence 34789999999999998776543 5667888999999999999999988752111
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC--cCCHHHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN--KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
++..+ .+......+-.+-....+.+--..+|+..+..- ..+...|+ ..-..||.+|+..+.
T Consensus 98 -----AVTrN-ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF-----------KTNtKLgkl~fd~~e 160 (440)
T KOG1464|consen 98 -----AVTRN-YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF-----------KTNTKLGKLYFDRGE 160 (440)
T ss_pred -----HHhcc-ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee-----------eccchHhhhheeHHH
Confidence 00000 001111112222222333333334444333221 11111111 122358888888888
Q ss_pred HHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHH----HHHHH
Q 048034 402 PFYALHYFRKSVFLQPN------------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIA----LNQLA 463 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~----~~~la 463 (558)
|..-.+.+++.-..+.. -..++..-...|.. +++..+-...|++++.+...- |.+ .-.=|
T Consensus 161 ~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~--qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGG 238 (440)
T KOG1464|consen 161 YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTE--QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGG 238 (440)
T ss_pred HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhh--hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCC
Confidence 87777666665443221 12344444566777 777777778888888764322 222 22235
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
..+.+.|++++|-..|=.+.+.+.+.+........-|.-||..+.+.|
T Consensus 239 KMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 239 KMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 667788899998887777776554443222222233344566655543
No 282
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.01 E-value=0.00044 Score=64.00 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFE 514 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 514 (558)
.|.++.|+..|..++.++|.....+...+.++.++++...|+..+..+++ .+++...-+-+.+.....+|+++
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e-------in~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE-------INPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc-------cCcccccccchhhHHHHHhhchH
Confidence 79999999999999999999999999999999999999999999999999 78998999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 048034 515 DAEVYCTRLLDYTG 528 (558)
Q Consensus 515 ~A~~~~~~al~~~~ 528 (558)
+|...+..+++++-
T Consensus 200 ~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 200 EAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999863
No 283
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.00 E-value=0.35 Score=46.24 Aligned_cols=182 Identities=22% Similarity=0.173 Sum_probs=119.8
Q ss_pred HHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc----ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhH
Q 048034 246 QELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL----REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSA 321 (558)
Q Consensus 246 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~ 321 (558)
...+.+..+...+..+... ........++.++..- .+..+|..+|..+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~-------------------------- 103 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA-------------------------- 103 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--------------------------
Confidence 3455666666666666552 1224444555555442 3455555555533
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 322 LSYLAHRVFTTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 322 a~~l~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
.....+...+.+|..|.. ..+..+|..+|+++....-... ..+.+.+|..|.
T Consensus 104 ----------a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~ 159 (292)
T COG0790 104 ----------AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYL 159 (292)
T ss_pred ----------hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHH
Confidence 233446677888888876 5589999999999988753321 012555666665
Q ss_pred Hc-----C--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048034 398 MM-----H--MPFYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 468 (558)
Q Consensus 398 ~~-----~--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 468 (558)
.- - ....|...|.++.... ++.+...+|.+|..- -..++.+|..+|.++-+... ....+.++ ++..
T Consensus 160 ~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~ 234 (292)
T COG0790 160 SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL 234 (292)
T ss_pred cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh
Confidence 53 1 2347999999988776 788889999888750 02378999999999999877 78888888 6666
Q ss_pred cC---------------CHHHHHHHHHHHHH
Q 048034 469 LG---------------RDEEAAFYYKKDLE 484 (558)
Q Consensus 469 ~g---------------~~~~A~~~~~~al~ 484 (558)
.| +...|...+.++..
T Consensus 235 ~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~ 265 (292)
T COG0790 235 NGEGVKKAAFLTAAKEEDKKQALEWLQKACE 265 (292)
T ss_pred cCCCchhhhhcccccCCCHHHHHHHHHHHHH
Confidence 66 55555666655554
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.95 E-value=0.066 Score=46.01 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 238 DFFLASTYQELRMHNEALTKYEYLQGTFGFS---NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 238 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
.+.++..+.+.+++++|+..++.++....+. ..+-.++|.+....|.+++|+..++.....
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~---------------- 155 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE---------------- 155 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc----------------
Confidence 3446777778888888888887777543222 234556788888888888887777654321
Q ss_pred hcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCC
Q 048034 315 AKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNY 370 (558)
Q Consensus 315 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (558)
...+......|.++...|+-++|...|.+++..+++.
T Consensus 156 -------------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 -------------------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred -------------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 1113345568999999999999999999999987553
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.15 Score=52.09 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRAL 364 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al 364 (558)
-.++..+|..+..+..+++|.++|.+.-
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888888888999988887653
No 286
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.56 Score=55.06 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANC---N----DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 493 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~---~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 493 (558)
.-|.+....-.. ..+..+-+-.+++++-. + ...+.+|...|++....|.++.|..++-++.+
T Consensus 1630 d~W~~Rl~~tq~--s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e--------- 1698 (2382)
T KOG0890|consen 1630 DNWKNRLERTQP--SFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE--------- 1698 (2382)
T ss_pred hhHHHHHHHhch--hHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh---------
Confidence 445555544444 45566666666665422 2 34467999999999999999999999988887
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 048034 494 PNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 494 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
..-+.++...|+.+...|+-..|+..+++.++.+-++
T Consensus 1699 ~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1699 SRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 2357899999999999999999999999999654333
No 287
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.21 Score=49.85 Aligned_cols=246 Identities=14% Similarity=0.050 Sum_probs=135.8
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHH
Q 048034 159 ISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKD 238 (558)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 238 (558)
....+.|......-|.++...+..+..+...|+.+.|+..+..++. ..|..+. .+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~------~~~kQ~~-----------------~l~~ 306 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP------IRMKQVK-----------------SLMV 306 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc------HHHHHHH-----------------HHHH
Confidence 4555556666667788888888888888888888888898888877 2333321 1223
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHH-HHHHH--------cccHHHHHHHHHHH---HHcCCCCcchH
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIA-KAQYS--------LREFEQVEVVFEEL---LRNDPYRVEDM 306 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a-~~~~~--------~~~~~~A~~~~~~~---l~~~p~~~~~~ 306 (558)
|-+|.++.-+.+|..|...+..+.+...-+.-.+..++ -|+.. .|+-+.|..+++.. +...|.+...-
T Consensus 307 fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E 386 (546)
T KOG3783|consen 307 FERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE 386 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh
Confidence 44688888899999999999999887655554554444 33332 23444444443332 23333322211
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhcCC---CChh--HHHHHHHHHhh--cCChHHHHHHHHHHHccCcCCHHHHHHhch
Q 048034 307 DMYSNVLYAKECFSALSYLAHRVFTTDK---YRPE--SCCIIGNYYSL--KGQHEKSVVYFRRALKLNKNYLSAWTLMGH 379 (558)
Q Consensus 307 ~~~~~~l~~~~~~~~a~~l~~~~~~~~~---~~~~--~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 379 (558)
.. ...-+++.....| ..+. .++.++.++.. ....++.. -++..+. .|...+.
T Consensus 387 ~f-------------~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~------ 445 (546)
T KOG3783|consen 387 KF-------------IVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELE-NPKIDDS------ 445 (546)
T ss_pred HH-------------HHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHh-ccCCCCc------
Confidence 11 0111122222222 1111 12333333221 11222222 1111111 1211000
Q ss_pred hccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhc
Q 048034 380 EYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL---QPN----DSRLWIAMAQCYETEQLHM-LEEAIKCYRRAANC 451 (558)
Q Consensus 380 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~---~p~----~~~~~~~la~~~~~~~~~~-~~~A~~~~~~al~~ 451 (558)
....--++.+|.++..+|+...|..+|..+++. ... -|.+++.+|..|.. +|. ..++..++.+|-..
T Consensus 446 ---Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~--~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 446 ---DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD--LGGGLKEARALLLKAREY 520 (546)
T ss_pred ---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh--cccChHHHHHHHHHHHhh
Confidence 001124566788888888888888888877632 111 25677888888887 777 88888888888766
Q ss_pred CC
Q 048034 452 ND 453 (558)
Q Consensus 452 ~~ 453 (558)
..
T Consensus 521 ~~ 522 (546)
T KOG3783|consen 521 AS 522 (546)
T ss_pred cc
Confidence 53
No 288
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.75 E-value=0.026 Score=50.61 Aligned_cols=93 Identities=27% Similarity=0.384 Sum_probs=67.8
Q ss_pred cCCHHHHHHHHHHHHhc----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh------cCCChHHHHH
Q 048034 435 LHMLEEAIKCYRRAANC----NDS---EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER------EGPNMVEALI 501 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~ 501 (558)
...+++|+..|.-|+-. ..+ -+..+..+|++|...|+.+....++++|++.+.+... ..-+...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 44566677666665532 111 2457888999999999988777777777776655431 1234467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 502 FLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 502 ~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.+|.+..+.|++++|..+|.+++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 89999999999999999999999853
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.70 E-value=0.0028 Score=37.60 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhCCCC
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVNSYPWN 209 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (558)
+++.+|.++...|++++|+..|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 68999999999999999999999999999964
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=1 Score=46.46 Aligned_cols=136 Identities=14% Similarity=0.068 Sum_probs=95.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHH
Q 048034 182 YGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYL 261 (558)
Q Consensus 182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 261 (558)
++.+-.--|++++|.+.|..+-+.+ | ....+.+.|++-...++++.-
T Consensus 740 ~aei~~~~g~feeaek~yld~drrD---------L------------------------Aielr~klgDwfrV~qL~r~g 786 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRRD---------L------------------------AIELRKKLGDWFRVYQLIRNG 786 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchhh---------h------------------------hHHHHHhhhhHHHHHHHHHcc
Confidence 3445555689999999987764421 1 144567788887777776654
Q ss_pred HhhcC--CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhH
Q 048034 262 QGTFG--FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPES 339 (558)
Q Consensus 262 ~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~ 339 (558)
-.... .-..++..+|..+..+..+++|.++|.+.- ....+..+++..+.++++..++.. -|.+...
T Consensus 787 ~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~LE~la~~----Lpe~s~l 854 (1189)
T KOG2041|consen 787 GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGELEVLART----LPEDSEL 854 (1189)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhHHHHHHh----cCcccch
Confidence 33221 123578889999999999999999998763 234567888888888888877766 4555666
Q ss_pred HHHHHHHHhhcCChHHHHHHHHH
Q 048034 340 CCIIGNYYSLKGQHEKSVVYFRR 362 (558)
Q Consensus 340 ~~~lg~~~~~~~~~~~A~~~~~~ 362 (558)
.-.+|..+...|.-++|++.|-+
T Consensus 855 lp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 855 LPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHhhchHHHHHHHHHh
Confidence 66778888888888888877754
No 291
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.59 E-value=0.12 Score=40.30 Aligned_cols=100 Identities=20% Similarity=0.140 Sum_probs=73.3
Q ss_pred HHHHhH--HHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 048034 388 AWYGLG--QAYEMMHMPFYALHYFRKSVFLQPN------------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN--- 450 (558)
Q Consensus 388 ~~~~lg--~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~--- 450 (558)
+|..|+ .-...-|.|++|...+++|++.... +...+..|+..+.. +|+|++++..-.+++.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~--Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG--LGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHh
Confidence 344443 4445678999999999999876432 34567888999999 9999998887777764
Q ss_pred ----cCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 451 ----CNDSEAI----ALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 451 ----~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
++.+... +.+..|..+...|+.++|+..|+.+.+.+.+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 4455544 55678899999999999999999999876543
No 292
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.58 E-value=1.3 Score=47.03 Aligned_cols=245 Identities=11% Similarity=-0.015 Sum_probs=130.0
Q ss_pred hcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHH
Q 048034 264 TFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCII 343 (558)
Q Consensus 264 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~l 343 (558)
..|.+....+..+.+....|+-++|.....++.......++....+-..+...|.........+--......+...-..+
T Consensus 124 ~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l 203 (644)
T PRK11619 124 EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYL 203 (644)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34778888888888899999988888888888766655555555554444433333332222222222222222222222
Q ss_pred HHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccch--HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH-
Q 048034 344 GNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDY--RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS- 420 (558)
Q Consensus 344 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~- 420 (558)
..... .+. ++..-...++..+|.......... +.+. .....++..-....+.+.|...+.+......-+.
T Consensus 204 ~~~l~--~~~-~~~a~a~~al~~~p~~~~~~~~~~----~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~ 276 (644)
T PRK11619 204 AKQLP--ADY-QTIASALIKLQNDPNTVETFARTT----GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNED 276 (644)
T ss_pred HHhcC--hhH-HHHHHHHHHHHHCHHHHHHHhhcc----CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHH
Confidence 22110 000 100000111111222111100000 0000 1122334444456677888888887644443322
Q ss_pred ---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH
Q 048034 421 ---RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 497 (558)
Q Consensus 421 ---~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 497 (558)
.++..+|.-... .+...+|...+..+..... +...+.....+....++++.+...+...-. ......
T Consensus 277 ~~~~~~~~lA~~~a~--~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~-------~~~~~~ 346 (644)
T PRK11619 277 QRQELRDIVAWRLMG--NDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPM-------EAKEKD 346 (644)
T ss_pred HHHHHHHHHHHHHHh--ccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCH-------hhccCH
Confidence 334455544444 3336677777776554332 233344444455588899887777766433 223467
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 498 EALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 498 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
...+++|+.+...|+.++|..+|+++..
T Consensus 347 rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 347 EWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8999999999999999999999999854
No 293
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.55 E-value=0.14 Score=49.51 Aligned_cols=157 Identities=9% Similarity=-0.057 Sum_probs=114.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHccc------------HHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 256 TKYEYLQGTFGFSNYLQAQIAKAQYSLRE------------FEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 256 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
..+++.+..+|.+...|..++...-..-. .+.-+.+|++|++.+|++...+..+..+.......++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677788899999988887765544322 567788999999999999998888888888888999999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhh---cCChHHHHHHHHHHHccCcCCHHHH-------HHhchhccccchHHHHHhH
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSL---KGQHEKSVVYFRRALKLNKNYLSAW-------TLMGHEYKSIDYRAWYGLG 393 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~-------~~~~~~~~~~~~~~~~~lg 393 (558)
...++++..+|.++..|...-..... .-.++.....|.+++..-..-.... ..+- .....++..+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e----~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELE----EFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHH----HHHHHHHHHHH
Confidence 99999999999999998766555443 3457788888887776422111000 0000 01123566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Q 048034 394 QAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 394 ~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
......|..+.|+..++..++++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHH
Confidence 77888999999999999998875
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.48 E-value=0.0045 Score=37.63 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=13.2
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
|..||.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 295
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.40 E-value=0.0082 Score=35.48 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Q 048034 271 LQAQIAKAQYSLREFEQVEVVFEELLRNDPY 301 (558)
Q Consensus 271 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 301 (558)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566677777777777777777777776665
No 296
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.37 E-value=0.086 Score=51.59 Aligned_cols=174 Identities=12% Similarity=-0.006 Sum_probs=97.2
Q ss_pred HhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHH--hhhcCHHHhhcC--CCCchHHHHHHHH
Q 048034 167 TLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQ--SLCTTIDILNSI--NLNNHWMKDFFLA 242 (558)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~--~~~~~~~~~~~l--~~~~~~~~~~~~a 242 (558)
.++...|-....+..++.++..+|+.+.|.++.++|+-.....+...+... ..-.....++-. ....-+...+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 344567999999999999999999999999999999865433222222100 000000000000 0011223333344
Q ss_pred HHHHHHhchHHHHHHHHHHHhhcCC-ChHH-HHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh
Q 048034 243 STYQELRMHNEALTKYEYLQGTFGF-SNYL-QAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 243 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~-~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 320 (558)
....+.|-+..|++..+-++.++|. ++.. .+.+=....+.++|+=-+..++........+
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~------------------ 172 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN------------------ 172 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh------------------
Confidence 5555666666666666666666665 4432 2223333344455544444444333210000
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCCh---------------HHHHHHHHHHHccCcC
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQH---------------EKSVVYFRRALKLNKN 369 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~---------------~~A~~~~~~al~~~p~ 369 (558)
....-|...+.++.++...++- ++|...+++|+...|.
T Consensus 173 -----------~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 173 -----------WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred -----------hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 0001245667777777777777 8999999999998876
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.37 E-value=0.94 Score=42.86 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=136.1
Q ss_pred HHHhchHHHHHHHHHHHhhc-CCCh-------HHHHHHHHHHHHcc-cHHHHHHHHHHHHHc----C---CCCc------
Q 048034 246 QELRMHNEALTKYEYLQGTF-GFSN-------YLQAQIAKAQYSLR-EFEQVEVVFEELLRN----D---PYRV------ 303 (558)
Q Consensus 246 ~~~~~~~~A~~~~~~~~~~~-p~~~-------~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~----~---p~~~------ 303 (558)
.+.|+++.|...+.++-... ..++ .+.+..|...+..+ +++.|..+++++.+. . ...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56889999999999987644 2232 35667788888888 999999999999886 2 2222
Q ss_pred -chHHHHHHHHHhcCCH---hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhch
Q 048034 304 -EDMDMYSNVLYAKECF---SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGH 379 (558)
Q Consensus 304 -~~~~~~~~~l~~~~~~---~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 379 (558)
..+..++.++...+.. .++..++..+....|+.+..+...-.+....++.+.+.+.+.+++..-+-...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~------- 156 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES------- 156 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc-------
Confidence 2345566666666554 45666666777777888888877777777789999999999998875431111
Q ss_pred hccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH---HHHhcCC------HHHHHHHHHHH
Q 048034 380 EYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL--QPNDSRLWIAMAQCY---ETEQLHM------LEEAIKCYRRA 448 (558)
Q Consensus 380 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~la~~~---~~~~~~~------~~~A~~~~~~a 448 (558)
+.........- ........|...+...+.. .|.... |.....+. ...+.++ .+.....+...
T Consensus 157 -----~~~~~l~~i~~-l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 157 -----NFDSILHHIKQ-LAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred -----hHHHHHHHHHH-HHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 01111111111 1223445677777666543 333222 43333222 2200111 33333333322
Q ss_pred Hhc--CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 449 ANC--NDSEA-------IALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 449 l~~--~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.+. .|-.. ..+++.|.-.++.++|++|+..|+-++.
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 211 12221 2667789999999999999999998775
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.35 E-value=0.0054 Score=37.27 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 499 ALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 499 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
++..||.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999997654
No 299
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=1.4 Score=44.19 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccC
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNR-FEDAEVYCTRLLDYT 527 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 527 (558)
-++.+|.++..+|+...|..+|..+++.........--.|.+++.+|..+..+|. ..++..++.+|-+..
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 5667899999999999999999999975333222334457899999999999999 999999999999875
No 300
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.29 E-value=1.1 Score=49.19 Aligned_cols=113 Identities=17% Similarity=0.083 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH-------hch
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL-------RMH 251 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~ 251 (558)
+.....++...+.|+.|+..|++....+|...+.+... |-.|...+++ ..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 535 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQ----------------------FRLGITLLEKASEQGDPRDF 535 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHH----------------------HHhhHHHHHHHHhcCChHHH
Confidence 44556677788899999999999999999877665543 2224443332 246
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
++|+..|+++-. .|..|--+...|.+|...|+|++-+++|.-+++..|+++..-...-.+.+
T Consensus 536 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (932)
T PRK13184 536 TQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVY 597 (932)
T ss_pred HHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 777777777543 45566777889999999999999999999999999998876555444433
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.06 E-value=0.024 Score=37.68 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHH
Q 048034 270 YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDM 308 (558)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 308 (558)
+.++.+|..+++.|+|++|..+.+.+++.+|++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 346677888888888888888888888888887665544
No 302
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=96.02 E-value=0.46 Score=40.37 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHHHh-hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYS-LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
..+|+.+..||.++. .+.+|++|...|+.--.-+ .++..-+.+| .++..|.. -..++...|+++|..+
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG---------~y~~~GKg-G~~~~l~~a~r~~~~a 99 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYG---------MYMLAGKG-GDDASLSKAIRPMKIA 99 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhh---------hhhhcccC-CCccCHHHHHHHHHHH
Confidence 345777777877765 4567777777777654432 1222222222 12222222 2334677777787777
Q ss_pred HhcCCCCHHHHHHHHHHHHHH---hcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------------------
Q 048034 413 VFLQPNDSRLWIAMAQCYETE---QLH--MLEEAIKCYRRAANCNDSEAIALNQLAKLHHA------------------- 468 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~---~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~------------------- 468 (558)
.. .+++.+...+|.++..- ..+ +.++|.+++.++-.+. +..+.+.|...|..
T Consensus 100 C~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~ 175 (248)
T KOG4014|consen 100 CD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRA 175 (248)
T ss_pred hc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchh
Confidence 65 34566666666666530 012 2567777777776554 33444455444433
Q ss_pred -----cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHhc
Q 048034 469 -----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH----NRFEDAEVYCTRLLD 525 (558)
Q Consensus 469 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~ 525 (558)
..+.+.|.++--++.+ -.++.+..++.+.|..- ++.++|..+-+++.+
T Consensus 176 ~~~~~~kDMdka~qfa~kACe---------l~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 176 ELGSLSKDMDKALQFAIKACE---------LDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred hhhhhhHhHHHHHHHHHHHHh---------cCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 2344555555555444 33455555555555321 244555555555544
No 303
>PRK10941 hypothetical protein; Provisional
Probab=95.95 E-value=0.085 Score=49.03 Aligned_cols=76 Identities=14% Similarity=-0.015 Sum_probs=63.9
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
+...++-.+|...++++.|+.+.+..+.+.|+++.-+.-.|.+|.+ +|.+..|...++..++..|+++.+-.-...
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q--L~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ--LDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4566777888899999999999999999999999989999999988 999999999999999998888875544333
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.91 E-value=0.12 Score=44.95 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCCh
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 496 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 496 (558)
...+..+|..|.+ .|+.++|+++|.++....... ...++.+..+....|++.....+..++-......+. ....
T Consensus 36 r~~~~~l~~~~~~--~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d-~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCK--IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD-WERR 112 (177)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch-HHHH
Confidence 3567889999999 999999999999988765433 347788888888999999999999988876543211 1111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 497 VEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 497 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
......-|..+...|+|.+|.+.|-.+..-
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 223444577778889999999999887653
No 305
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.90 E-value=0.033 Score=51.00 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=64.2
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
..+.-..+.|+.++|...|+.|+.+.|.++.++..+|..... .++.-+|-.||-+|+.++|.+..++.+.+.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~--~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM--HNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh--hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334445678999999999999999999999999999999999 899999999999999999999988877654
No 306
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.84 E-value=0.2 Score=38.95 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhc-----------
Q 048034 182 YGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRM----------- 250 (558)
Q Consensus 182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------- 250 (558)
++.-+++.||+-+|+++.+.++...+.+..+|.. +...|.++..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~l----------------------h~~QG~if~~lA~~ten~d~k~~y 59 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLL----------------------HRLQGTIFYKLAKKTENPDVKFRY 59 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHH----------------------HHHHhHHHHHHHHhccCchHHHHH
Confidence 4677899999999999999999998887766522 2223555544332
Q ss_pred hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc
Q 048034 251 HNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN 298 (558)
Q Consensus 251 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~ 298 (558)
.-.+++.+.++....|..+..++.+|.-+-....|+++..-.++++..
T Consensus 60 Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 245778888888888988888888887777777788888777777754
No 307
>PRK10941 hypothetical protein; Provisional
Probab=95.79 E-value=0.13 Score=47.88 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHH
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL 500 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 500 (558)
++..++-.+|.. .++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++ ..|+++.+-
T Consensus 182 Rml~nLK~~~~~--~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~-------~~P~dp~a~ 252 (269)
T PRK10941 182 KLLDTLKAALME--EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE-------QCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHH--cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------hCCCchhHH
Confidence 566788889999 99999999999999999999999999999999999999999999999999 456666655
Q ss_pred HHHHH
Q 048034 501 IFLAT 505 (558)
Q Consensus 501 ~~la~ 505 (558)
.....
T Consensus 253 ~ik~q 257 (269)
T PRK10941 253 MIRAQ 257 (269)
T ss_pred HHHHH
Confidence 44333
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.78 E-value=0.041 Score=53.57 Aligned_cols=130 Identities=13% Similarity=-0.011 Sum_probs=112.2
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHH
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSY 324 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~ 324 (558)
....|+.-.|-+.+..++...|..+......+.+....|+|+.+...+..+-..-.....+...+...++.++++.+|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 35568888888888889999999999999999999999999999999887776666666777788888999999999999
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHH
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAW 374 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (558)
++.-.+...-.++++....+......|-+++|..++++.+.++|.....|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 99999999889999888888888888999999999999999987654444
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.73 E-value=0.24 Score=41.52 Aligned_cols=84 Identities=15% Similarity=-0.023 Sum_probs=75.4
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
.+..+..+-...++.+++...+...--+.|..+..-..-|.++.. .|++.+|+..++.+....|..+.+--.++.|+.
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~--r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV--RGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH--hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 455566666788899999999999999999999999999999999 999999999999999999999998899999999
Q ss_pred HcCCHH
Q 048034 468 ALGRDE 473 (558)
Q Consensus 468 ~~g~~~ 473 (558)
.+|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888864
No 310
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.70 E-value=0.019 Score=33.29 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhhCCC
Q 048034 177 FILYLYGLVLKDKGSENLARTVLVESVNSYPW 208 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 208 (558)
..++.+|.++...|++++|+..|.++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46889999999999999999999999998875
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.69 E-value=0.23 Score=41.57 Aligned_cols=96 Identities=16% Similarity=-0.035 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALI 501 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 501 (558)
.+..+..+-.. .++.+++...+.-.--+.|..+..-..-|.++...|++.+|+.+++.+.+ ..+..+.+.-
T Consensus 12 gLie~~~~al~--~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-------~~~~~p~~kA 82 (160)
T PF09613_consen 12 GLIEVLSVALR--LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE-------RAPGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHc--cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-------cCCCChHHHH
Confidence 44555666667 89999999999999999999999999999999999999999999999877 6788888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 502 FLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 502 ~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.++.|+..+|+.+ =..+...+++..
T Consensus 83 LlA~CL~~~~D~~-Wr~~A~evle~~ 107 (160)
T PF09613_consen 83 LLALCLYALGDPS-WRRYADEVLESG 107 (160)
T ss_pred HHHHHHHHcCChH-HHHHHHHHHhcC
Confidence 9999999999863 223345566653
No 312
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.63 E-value=0.16 Score=38.34 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 405 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 405 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
.+..+++.+..+|++..+.+.+|..+.. .|++++|++.+-.+++.+++. ..+.-.+-.++..+|.-+.-..-|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~--~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA--AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3567888999999999999999999999 999999999999999988765 44556666666666664444433333
No 313
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.62 E-value=0.022 Score=32.97 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKN 369 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 369 (558)
.++..+|.++...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46788999999999999999999999998875
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.55 E-value=1.3 Score=37.53 Aligned_cols=120 Identities=13% Similarity=-0.016 Sum_probs=87.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cH--HHHHHHHHHHHHcCC
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDS--RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EA--IALNQLAKLHHALGR 471 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~--~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~--~~--~~~~~la~~~~~~g~ 471 (558)
..+..++|+..|...-+..-... .+....|.+... .|+...|+..|..+-...+. -. .+...-+.++...|.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~--kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQ--KGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh--cccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45677888888887766544332 345666778878 99999999999987665432 11 255666777888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
|++-....+..-. ..+|-...+.-.||..-.+.|++.+|..+|.++..
T Consensus 148 y~dV~srvepLa~------d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAG------DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccC------CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8876665544332 24566677778899999999999999999999887
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.47 E-value=0.07 Score=35.52 Aligned_cols=38 Identities=13% Similarity=0.025 Sum_probs=22.0
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAM 426 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 426 (558)
.|.++..+.++|+|++|..+.+.++++.|++..+....
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 45566666666666666666666666666665554433
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.40 E-value=3.1 Score=40.98 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC---hHHHHHHHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQL-------AKLHHALGRDEEAAFYYKKDLERMEAEEREGPN---MVEALIFLA 504 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~la 504 (558)
.++...|..++.-...++|+... ...+ -.+.. + -+.-..-++..+.........+.+ -+.-+..-|
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~sv-s~Kllls~~~lq~Iv~--~-DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISV-SEKLLLSPKVLQDIVC--E-DDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchh-hhhhhcCHHHHHHHHh--c-chHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 78888888888877778887652 1111 11111 1 111111222222221111112222 233344457
Q ss_pred HHHHHcCC-HHHHHHHHHHHhccCCCcHHHHHHHH
Q 048034 505 THCRAHNR-FEDAEVYCTRLLDYTGPEKETAKSML 538 (558)
Q Consensus 505 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~ll 538 (558)
.-+.+.|. -++|+..++.+++..+.+.+--..+.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~ 421 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF 421 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 88888887 88999999999998877775443333
No 317
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.22 E-value=0.27 Score=37.13 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Q 048034 254 ALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR 302 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 302 (558)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567888889999999999999999999999999999999999988765
No 318
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.13 E-value=0.082 Score=48.52 Aligned_cols=65 Identities=23% Similarity=0.212 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
.|+.++|...|+.|+.+.|+++.++..+|......++.-+|-.+|-+++. .+|.+.+++.+.++.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt-------isP~nseALvnR~RT 193 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT-------ISPGNSEALVNRART 193 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee-------eCCCchHHHhhhhcc
Confidence 89999999999999999999999999999999999999999999999998 678888887766543
No 319
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.99 E-value=0.78 Score=35.73 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=64.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPNDSRLW---IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~---~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
+..++..|++-+|++..+..+...+++...| ..-|.++.. .+......+....+.+|
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~--------------lA~~ten~d~k~~yLl~------ 62 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK--------------LAKKTENPDVKFRYLLG------ 62 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH--------------HHHhccCchHHHHHHHH------
Confidence 4456666666666666666666665554333 222333222 23333333333333333
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 048034 470 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 470 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 529 (558)
+++.|.++.. ..|..+..++.+|.-+-....|+++..-.++++.+..|
T Consensus 63 -----sve~~s~a~~-------Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 63 -----SVECFSRAVE-------LSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred -----hHHHHHHHhc-------cChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 4566666666 77888888888998887778889999988888876533
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.98 E-value=0.32 Score=42.32 Aligned_cols=98 Identities=12% Similarity=-0.025 Sum_probs=76.0
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHH----
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS--EAI---- 457 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~---- 457 (558)
.++..+|..|.+.|+.+.|++.|.++....... ..++..+..+... .+++........++-..-.. +..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~--~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF--FGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 468899999999999999999999988765433 4567788888888 99999999999998765322 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
....-|..+...++|.+|...|-.+...+
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 33344666777899999999888776543
No 321
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.84 E-value=0.055 Score=47.57 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=63.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRM 543 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~ 543 (558)
....+.++.+.|.+.|.++++ ..|.....|+.+|....+.|+++.|...|++.++++|++...+.--|..+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~-------lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~lg~ 75 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALE-------LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAVLGR 75 (287)
T ss_pred chhcccCChHHHHHHHHHHhh-------cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHhhcC
Confidence 345678899999999999999 7799999999999999999999999999999999999887766555555554
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.78 E-value=1 Score=37.11 Aligned_cols=103 Identities=12% Similarity=-0.017 Sum_probs=79.1
Q ss_pred HHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHH
Q 048034 243 STYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSAL 322 (558)
Q Consensus 243 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a 322 (558)
..-...++.+++...+..+--..|+.+.+...-|.++...|++.+|+.+|+.+.+..+..+-..-.++.+++.+++.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp--- 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA--- 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh---
Confidence 33445788899999998888899999999999999999999999999999999988877777777888888877764
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 048034 323 SYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRAL 364 (558)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 364 (558)
.|...+.-....+...+|+...+...
T Consensus 95 ----------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 ----------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ----------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 34444444445555555555554443
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.75 E-value=0.3 Score=43.87 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=59.1
Q ss_pred hcCChHHHHHHHHHHHccC----cCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHH-------HHHHHHHHHhcCC
Q 048034 349 LKGQHEKSVVYFRRALKLN----KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFY-------ALHYFRKSVFLQP 417 (558)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-------A~~~~~~a~~~~p 417 (558)
....+++|+..|.-|+-.. .+.. . -+..+..+|++|...|+.+. |+..|.+++....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s----~--------~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPS----K--------KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED 156 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHH----H--------HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4456778888887776421 1111 1 23567888999998888554 5555555554322
Q ss_pred ------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 418 ------NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 418 ------~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
+...+.+.+|.+..+ .|++++|++.|.+++....
T Consensus 157 ~~~~~~~~~~l~YLigeL~rr--lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRR--LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHcCCC
Confidence 124567778888888 8888888888888877643
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.70 E-value=3.3 Score=37.74 Aligned_cols=195 Identities=10% Similarity=0.047 Sum_probs=114.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHH
Q 048034 283 REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362 (558)
Q Consensus 283 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 362 (558)
.+.++|+.-|++++++.+...+-- ..++-.+..+++.+|++++-...|++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWG------------------------------FKALKQmiKI~f~l~~~~eMm~~Y~q 90 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWG------------------------------FKALKQMIKINFRLGNYKEMMERYKQ 90 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhH------------------------------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 468889999999998877643211 12444566777888888888888777
Q ss_pred HHccC-----cCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHH----HHHHHHHH
Q 048034 363 ALKLN-----KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL--QPNDSRLW----IAMAQCYE 431 (558)
Q Consensus 363 al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~----~~la~~~~ 431 (558)
.+..- .++.+ .....+-..-....+.+--..+|+..+.. +..+.+.| ..+|.+|+
T Consensus 91 lLTYIkSAVTrNySE--------------KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~f 156 (440)
T KOG1464|consen 91 LLTYIKSAVTRNYSE--------------KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYF 156 (440)
T ss_pred HHHHHHHHHhccccH--------------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhhe
Confidence 66421 12211 11111111111223333333444433321 22344444 46899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCCh-HH
Q 048034 432 TEQLHMLEEAIKCYRRAANCND-----S-------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM-VE 498 (558)
Q Consensus 432 ~~~~~~~~~A~~~~~~al~~~~-----~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~ 498 (558)
. .+.|.+-.+.+++.-.... + -..++..-..+|..+++-..-...|++++..- ... ..|.. ..
T Consensus 157 d--~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK-SAI-PHPlImGv 232 (440)
T KOG1464|consen 157 D--RGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK-SAI-PHPLIMGV 232 (440)
T ss_pred e--HHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh-ccC-CchHHHhH
Confidence 8 8888887777776543321 1 12245555677888888888888999988732 111 11211 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 499 ALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 499 ~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
+.-.=|..+.+.|++++|-.-|-.+++
T Consensus 233 IRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 233 IRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred HHHcCCccccccchHHHHHhHHHHHHh
Confidence 222347788899999999988888875
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.68 E-value=0.4 Score=47.39 Aligned_cols=117 Identities=12% Similarity=0.085 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 048034 403 FYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR-DEEAAFYYKK 481 (558)
Q Consensus 403 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~ 481 (558)
..-...|+.|+...+.|+..|........+ .+.+.+--..|.+++...|+++..|..-|.-.+..+. .+.|...|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk--~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKK--KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 455789999999999999999998888887 7889999999999999999999999999987777666 9999999999
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 482 DLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 482 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
+++ .+|+.+..|...-+.-.. +-+=...-++.+..+..+.
T Consensus 166 gLR-------~npdsp~Lw~eyfrmEL~---~~~Kl~~rr~~~g~~~~~~ 205 (568)
T KOG2396|consen 166 GLR-------FNPDSPKLWKEYFRMELM---YAEKLRNRREELGLDSSDK 205 (568)
T ss_pred Hhh-------cCCCChHHHHHHHHHHHH---HHHHHHHHHHHhccccchh
Confidence 999 678888877654443321 2222233345555543333
No 326
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.65 E-value=7.3 Score=41.44 Aligned_cols=231 Identities=12% Similarity=0.041 Sum_probs=125.6
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHh---hcCChHHHHHHHHHHHccCc
Q 048034 292 FEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYS---LKGQHEKSVVYFRRALKLNK 368 (558)
Q Consensus 292 ~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~p 368 (558)
++.-+.+++.+......|..+++..|+..+....-..+..+.|..+..|..-..-.. ..+.-.++...|++++. +-
T Consensus 102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy 180 (881)
T KOG0128|consen 102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DY 180 (881)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-cc
Confidence 333344444444444444444455555555444444445555555555543322211 23566777778888875 33
Q ss_pred CCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhcCCHHHH
Q 048034 369 NYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN-------DSRLWIAMAQCYETEQLHMLEEA 441 (558)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~~~~~la~~~~~~~~~~~~~A 441 (558)
+....|.-.+ ...+..+..+...+.++.-...|.+++..-.. ...++..+-..|.. .-+.++-
T Consensus 181 ~~v~iw~e~~--------~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~--n~~~~qv 250 (881)
T KOG0128|consen 181 NSVPIWEEVV--------NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLC--NVEQRQV 250 (881)
T ss_pred ccchHHHHHH--------HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 4444444333 12233334455667778888888888764321 24455666666666 6666777
Q ss_pred HHHHHHHHhcCCCcH---HHHHHHH--HH-HHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 048034 442 IKCYRRAANCNDSEA---IALNQLA--KL-HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFED 515 (558)
Q Consensus 442 ~~~~~~al~~~~~~~---~~~~~la--~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 515 (558)
+.++.+.+...-+.. ..|.... .+ .....+++.|..-..+.+..+.......+.....+..+-+.....|+.-.
T Consensus 251 ~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 251 IALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 888888776542211 1222222 11 22345666676666665554444433445555566666777777788777
Q ss_pred HHHHHHHHhccCCCcHHH
Q 048034 516 AEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 516 A~~~~~~al~~~~~~~~~ 533 (558)
-...+++++.-.+-+.+.
T Consensus 331 i~l~~eR~~~E~~~~~~~ 348 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRAL 348 (881)
T ss_pred HHHHHHHHHHhccccHHH
Confidence 777777777554444433
No 327
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.61 E-value=6.3 Score=40.59 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=57.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRL 422 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 422 (558)
.+..+...|+.++|+...- +....+..+.+++-+...+.+....++..+.....+.-|.+.|++.-..
T Consensus 709 AAEmLiSaGe~~KAi~i~~-----d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICG-----DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred HHHHhhcccchhhhhhhhh-----cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 3455566677666665321 1111122222221111112334445555555566666666666554221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 482 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 482 (558)
-.+...+.. .+++.+|....++.-+.-| .+++..|.-+.+..++++|.+.|-++
T Consensus 777 -ksiVqlHve--~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 777 -KSLVQLHVE--TQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred -HHHhhheee--cccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 123344555 6777777666655433322 24455555555555555555555443
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.34 E-value=8.7 Score=41.05 Aligned_cols=170 Identities=8% Similarity=-0.092 Sum_probs=92.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRL 422 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 422 (558)
++..-....+.+.|...+.+......-.... ...++..+|.-....+...+|..++..+.... .+...
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~ 314 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQ-----------RQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSL 314 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHH-----------HHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHH
Confidence 3333445666777777777654433322221 11234444444444333556677776654332 23333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------Hhhh---h
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM--------EAEE---R 491 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~---~ 491 (558)
+.....+... .++++.+...+...-..........+.+|..+...|+.++|...|+++.... +..+ .
T Consensus 315 ~e~r~r~Al~--~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~ 392 (644)
T PRK11619 315 LERRVRMALG--TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYP 392 (644)
T ss_pred HHHHHHHHHH--ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCC
Confidence 3333334446 7777776666666433333455677778888777888888888877764310 0000 0
Q ss_pred c----CCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 492 E----GPNM-----VEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 492 ~----~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
. .|.. .......+..+...|+...|...+..++..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 393 LKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred CCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 0 0000 012234567778888888888888877764
No 329
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.57 Score=47.65 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=83.8
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 462 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 462 (558)
+.+-+.-.++..+|..++++|...+..-|.| .....+++.||.. +.+.+.|.+++++|-+.+|.++.....+
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~--L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK--LEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 4455667788899999999999999876654 4567889999999 9999999999999999999999988888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q 048034 463 AKLHHALGRDEEAAFYYKKDLERME 487 (558)
Q Consensus 463 a~~~~~~g~~~~A~~~~~~al~~~~ 487 (558)
-.+....|+.++|+.+..+....+.
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhhc
Confidence 8888999999999999888776543
No 330
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=1.5 Score=44.38 Aligned_cols=134 Identities=16% Similarity=0.061 Sum_probs=102.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIA--MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~--la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
..+...-++..+...+.++|.++..+.. +...+.. .+....+.-....++..+|.+..+..+++......|....+
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAP--LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccc--cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 3444445677777777788888877543 3666666 88888999999999999999999999999999888888777
Q ss_pred HHHHHH-HHHHHHhhhhcCCChHHHHHHH------HHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 048034 476 AFYYKK-DLERMEAEEREGPNMVEALIFL------ATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRG 540 (558)
Q Consensus 476 ~~~~~~-al~~~~~~~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~ 540 (558)
...+.. +.. ..|.+......+ ++.....|+..++.....++.++.|...+....++..
T Consensus 121 ~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 121 LADISEIAEW-------LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHh-------cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777666 444 445555554444 8888889999999999999999988887766655544
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.13 E-value=0.15 Score=31.78 Aligned_cols=33 Identities=42% Similarity=0.336 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 457 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 457 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
.++.++|.+|...|++++|..++++++......
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 456777888888888888888888877755443
No 332
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.10 E-value=1.9 Score=44.22 Aligned_cols=183 Identities=10% Similarity=-0.031 Sum_probs=97.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHH
Q 048034 180 YLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYE 259 (558)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 259 (558)
.+++.++.-.|++.+|.+.|.+.=..+. ..+.+.. +..|-.++-++..|..++-..+.+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enR-AlEmyTD--------------------lRMFD~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENR-ALEMYTD--------------------LRMFDYAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhh-HHHHHHH--------------------HHHHHHHHHHhhcCChHHHHHHHH
Confidence 4567788888999999999987532111 0011111 122334666666666666555555
Q ss_pred HHHhh--cCCChHHHHHHHHHHHHcccHHHHHHHH----------HHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 260 YLQGT--FGFSNYLQAQIAKAQYSLREFEQVEVVF----------EELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 260 ~~~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~----------~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
+-.+. +-+.+. ..|..+...|+.++|+.+. +-..+++....+.+...+..+..+....-|..++.
T Consensus 695 KRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 695 KRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 44331 112222 2355666777777776542 22223344444445555555555555555554444
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALH 407 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 407 (558)
++- -.-.+...+...+++.+|...-++--+.-|+ +++-.|+.+....++++|.+
T Consensus 772 k~g--------D~ksiVqlHve~~~W~eAFalAe~hPe~~~d------------------Vy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 772 KMG--------DLKSLVQLHVETQRWDEAFALAEKHPEFKDD------------------VYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred Hhc--------cHHHHhhheeecccchHhHhhhhhCcccccc------------------ccchHHHHhhhhhhHHHHHH
Confidence 421 1123445555667777776655544333332 56666677777777777777
Q ss_pred HHHHH
Q 048034 408 YFRKS 412 (558)
Q Consensus 408 ~~~~a 412 (558)
.|.+|
T Consensus 826 AfhkA 830 (1081)
T KOG1538|consen 826 AFHKA 830 (1081)
T ss_pred HHHHh
Confidence 66655
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.01 E-value=0.96 Score=37.32 Aligned_cols=80 Identities=18% Similarity=0.039 Sum_probs=69.0
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 471 (558)
+...-...++++++...+...--+.|+.+.+-..-|.++.. .|++.+|+..++....-.+..+...-.++.|+.-+|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~--rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA--RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH--cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33444558899999999999888999999999999999999 9999999999999988888888888888888888887
Q ss_pred HH
Q 048034 472 DE 473 (558)
Q Consensus 472 ~~ 473 (558)
.+
T Consensus 94 p~ 95 (153)
T TIGR02561 94 AE 95 (153)
T ss_pred hH
Confidence 53
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.83 E-value=0.44 Score=38.37 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHh---chHHHHHHHHHHHh-hcCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH
Q 048034 238 DFFLASTYQELR---MHNEALTKYEYLQG-TFGF-SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY 309 (558)
Q Consensus 238 ~~~~a~~~~~~~---~~~~A~~~~~~~~~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 309 (558)
.|.++.++.... +..+.+.+++.+++ ..|. .-+..+.+|..+++.++|+.++.+.+.+++..|++..+...-
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 445576666544 55678889999886 4444 345778899999999999999999999999999997765543
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.71 E-value=0.12 Score=45.48 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=55.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 457 (558)
.....++.+.|.+.|.+++.+.|.....|+.+|....+ .|+++.|.+.|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek--ag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK--AGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh--cccHHHHHHHHHHHHcCCccccc
Confidence 44567899999999999999999999999999999999 99999999999999999987643
No 336
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=2.9 Score=42.34 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=112.4
Q ss_pred cccHHHHHHHHHHHHHcC-CCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHH
Q 048034 282 LREFEQVEVVFEELLRND-PYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYF 360 (558)
Q Consensus 282 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 360 (558)
..-|++|...|.-+.... |+++.. .+...|++......++.+...+|+.+-|....
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~-----------------------lL~ssPYHvdsLLqva~~~r~qgD~e~aadLi 307 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLI-----------------------LLISSPYHVDSLLQVADIFRFQGDREMAADLI 307 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceee-----------------------eeccCCcchhHHHHHHHHHHHhcchhhHHHHH
Confidence 455788888888777654 443221 23456888999999999999999998887777
Q ss_pred HHHHc-----cCcCCHHHHHHhchhcc-cc---chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 048034 361 RRALK-----LNKNYLSAWTLMGHEYK-SI---DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN-DSRLWIAMAQCY 430 (558)
Q Consensus 361 ~~al~-----~~p~~~~~~~~~~~~~~-~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~ 430 (558)
++++- ..|.+.......-.-|. |. .+.+.+..-+.+.+.|-+..|.++.+-.+.++|. ||.....+..+|
T Consensus 308 eR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 308 ERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred HHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 77652 12222111000000000 11 2234444556667889999999999999999998 887766666665
Q ss_pred HHHhcCCHHHHHHHHHHHH-----hcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Q 048034 431 ETEQLHMLEEAIKCYRRAA-----NCNDSEAIALNQLAKLHHALGR---DEEAAFYYKKDLERME 487 (558)
Q Consensus 431 ~~~~~~~~~~A~~~~~~al-----~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 487 (558)
.- ...+|.=-+..++..- ..-|+.+ .-..+|..|..... -+.|...+.+|+..++
T Consensus 388 AL-rareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 388 AL-RAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HH-HHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 53 1555655555555542 2234332 22345556655554 5678888888887654
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.41 E-value=16 Score=40.74 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=71.3
Q ss_pred HHHHHhhcccchHHHHHHHhhccC----ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhh
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTG----KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRK 170 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~----~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (558)
-.-.++..-|.|++|+.++++... .+.-+ =+.+-+|-.- .|.+.+ ......+.+++.+.+.+..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~ 547 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY---EAQFRLGITL-LEKASE--------QGDPRDFTQALSEFSYLHG 547 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch---HHHHHhhHHH-HHHHHh--------cCChHHHHHHHHHHHHhcC
Confidence 345677788999999999998731 11100 0122222110 011110 0112567777777776554
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHH
Q 048034 171 NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWL 214 (558)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 214 (558)
.+..|.-|.-+|.+|.++|++++-+++|.-+++.+|.++..-.
T Consensus 548 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 548 -GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred -CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 5778889999999999999999999999999999998876543
No 338
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=4.8 Score=41.04 Aligned_cols=136 Identities=12% Similarity=-0.000 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCCCcchHHHH--HHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHH-HH
Q 048034 288 VEVVFEELLRNDPYRVEDMDMY--SNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR-AL 364 (558)
Q Consensus 288 A~~~~~~~l~~~p~~~~~~~~~--~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al 364 (558)
++..+...+.++|.+++.+... +..+...+....+.......+..+|.......++|......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444555555666665553332 44444456666667777777788888888888888888777776666555554 88
Q ss_pred ccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 048034 365 KLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYET 432 (558)
Q Consensus 365 ~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 432 (558)
...|++......+ ..++.+|.....+|+..++.....++..+.|.++++...+......
T Consensus 130 ~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 130 WLSPDNAEFLGHL---------IRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred hcCcchHHHHhhH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 8888877654322 2355589999999999999999999999999998776666555444
No 339
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=4.7 Score=34.27 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=18.7
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK 365 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 365 (558)
+|.+..+.-.||..-++.|++.+|...|.+...
T Consensus 163 n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 163 NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344444555566666666666666666665544
No 340
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.13 E-value=0.95 Score=50.28 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=109.0
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ--------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--- 451 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~--- 451 (558)
|.....+..++.++..++++++|+..-.++.-+. |+....+.+++...+. .++...|...+.++..+
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~--~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA--VKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh--ccCccchhhhHHHHHHhhcc
Confidence 3455678899999999999999999988886542 4556778888888888 88999999999988765
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 452 -----NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER-EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 452 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.|.......+++.++...++++.|+.+.+.++........ ..-.....+..+++.+...|++..|....+....
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 3444557788999999999999999999999985444332 2234456667788888888888887776665543
No 341
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.09 E-value=0.65 Score=35.51 Aligned_cols=54 Identities=26% Similarity=0.247 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 048034 435 LHMLEEAIKCYRRAANCNDS---------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 488 (558)
.|++.+|++.+.+.+..... ...++.++|.++...|++++|+..++++++..++
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 68888887777777654211 1346788899999999999999999999986654
No 342
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.96 E-value=2.9 Score=41.27 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
+...+.+++...|+|..|++.++.. .++.. ..+.... +.+...+|.+|-+|..+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~--~l~~~V~----~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKK--GLYTKVP----ACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Ccccc--hhhccCc----chheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888999999999987643 33322 1222111 23556899999999999999999999998763
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.95 E-value=7.9 Score=36.10 Aligned_cols=138 Identities=20% Similarity=0.113 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.+|+.+..+|..|...|++.+|..+|-.. ++..+ .+...+ .+.....
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~-------------~~~~~l---------------l~~~~~~ 134 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSA-------------FAYVML---------------LEEWSTK 134 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHH-------------HHHHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhH-------------HHHHHH---------------HHHHHHh
Confidence 46889999999999999999988877543 11110 011001 1112223
Q ss_pred cCCCCHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhc----CC-----------CcHHH-HHHHHHHHHHcCCHHHHHH
Q 048034 415 LQPNDSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANC----ND-----------SEAIA-LNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 415 ~~p~~~~~~~~la~~-~~~~~~~~~~~A~~~~~~al~~----~~-----------~~~~~-~~~la~~~~~~g~~~~A~~ 477 (558)
-.|.....+...+.+ |.. .++...|...+..-.+. .| ..|.. +..+-..-.+.+ +..
T Consensus 135 ~~~~e~dlfi~RaVL~yL~--l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~----~~~ 208 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLC--LGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERD----NLP 208 (260)
T ss_dssp TSS--HHHHHHHHHHHHHH--TTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-----HH
T ss_pred cCCcchhHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcC----cHH
Confidence 345555555555443 445 78888888877665544 22 22221 111111122333 245
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 478 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 478 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
.|....+.+......+|.....+..+|..|+...
T Consensus 209 ~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 209 LFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence 6666666554443344555666677888887643
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.93 E-value=0.46 Score=36.37 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEEREG--PNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
..+.|++.+|++.+.+..+......... .....+...+|.++...|++++|...+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4578999999999999988654433211 1345677889999999999999999999999763
No 345
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.90 E-value=0.26 Score=45.52 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=65.6
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIA-MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 461 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 461 (558)
+.|+..|...+......|.+.+--..|.++++..|.+...|.. -+.-+.. .++++.+...|.+++.++|++|..|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~--~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE--IANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh--hccHHHHHHHHHhhhccCCCCchHHHH
Confidence 4466677777777777888999999999999999999999976 4555666 899999999999999999999987765
Q ss_pred H
Q 048034 462 L 462 (558)
Q Consensus 462 l 462 (558)
.
T Consensus 182 y 182 (435)
T COG5191 182 Y 182 (435)
T ss_pred H
Confidence 4
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.82 E-value=2.4 Score=42.89 Aligned_cols=101 Identities=16% Similarity=-0.011 Sum_probs=69.5
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHH
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSY 324 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~ 324 (558)
..+.|+.+.|.+...+ .+++..|.++|......|+++-|..+|+++- .+..+.-++...|+.+....
T Consensus 328 Al~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHH
T ss_pred HHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHH
Confidence 5678888888776543 2467899999999999999999999998863 34566667777888888888
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 363 (558)
++..+......+ ..-.++...|+.++.++.+.++
T Consensus 395 l~~~a~~~~~~n-----~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERGDIN-----IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-HH-----HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHccCHH-----HHHHHHHHcCCHHHHHHHHHHc
Confidence 877755544322 2334455667777777666553
No 347
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.82 E-value=3.7 Score=33.24 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 455 EAIALNQLAKLHHALGR---DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 455 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
.....+++|+++....+ ..+.+.+++..++. ......-+..+.||..+.+.|+|++++.+.+..++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 35577888888877655 45666777776641 12234456777888889999999999999999999886655
Q ss_pred HH
Q 048034 532 ET 533 (558)
Q Consensus 532 ~~ 533 (558)
+.
T Consensus 106 Qa 107 (149)
T KOG3364|consen 106 QA 107 (149)
T ss_pred HH
Confidence 43
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.80 E-value=0.25 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~ 451 (558)
.++.++|.+|.. .|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA--QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH--CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hhhcchhhHHHHHHHHH
Confidence 456777888877 78888888888777764
No 349
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.72 E-value=5 Score=37.13 Aligned_cols=67 Identities=18% Similarity=0.061 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 457 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 457 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
.+...+|.-|...|++++|+.+|+.+...+.+.+ -..-...++..+..|+...|+.+..+.+.-+++
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3667889999999999999999999977554332 223345667778889999999888877665544
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.50 E-value=12 Score=37.87 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
-...++.++..+|-++.|+.+. .+| +..+.| ..+.|+.+.|.+..+ ..+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~-----~D~------------------~~rFeL---Al~lg~L~~A~~~a~-----~~~ 345 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFV-----TDP------------------DHRFEL---ALQLGNLDIALEIAK-----ELD 345 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-----S-H------------------HHHHHH---HHHCT-HHHHHHHCC-----CCS
T ss_pred HHHHHHHHHHHCCCHHHHHhhc-----CCh------------------HHHhHH---HHhcCCHHHHHHHHH-----hcC
Confidence 3456777777888888777642 222 233333 357888888876543 234
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL 483 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 483 (558)
++..|..||..... .|+++-|..+|+++-. +..+..+|.-.|+.+.=.+..+.+.
T Consensus 346 ~~~~W~~Lg~~AL~--~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALR--QGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHH--TTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 77889999999998 9999999998887532 4456666667777655444444443
No 351
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=4.5 Score=37.27 Aligned_cols=99 Identities=8% Similarity=-0.027 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANC------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 497 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 497 (558)
..+..++.+ .|+|.+|+......+.- .+.-..++..-..+|....+..++...+..+-...... -.|...
T Consensus 129 ~Kli~l~y~--~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~--YCPpql 204 (421)
T COG5159 129 CKLIYLLYK--TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSA--YCPPQL 204 (421)
T ss_pred HHHHHHHHh--cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhcc--CCCHHH
Confidence 456777888 99999999887765532 23344577777888999888888888777665432211 224333
Q ss_pred HHHHH--HHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 498 EALIF--LATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 498 ~~~~~--la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.+... -|..+....+|..|..||-.+++-
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 33333 366677778999999999988873
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.23 E-value=0.25 Score=31.33 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcHHHHHHHHHH
Q 048034 500 LIFLATHCRAHNRFEDAEVYCTRLLDYTG-PEKETAKSMLRG 540 (558)
Q Consensus 500 ~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~ll~~ 540 (558)
.+.||..|...|+.+.|.+.++.++...+ +....++.++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 35799999999999999999999996421 223445666543
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=1.2 Score=45.43 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=82.6
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 048034 342 IIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 342 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
+-|.-.++..+|..+++.|...+..-|.+.... ........+..+|..+.+.+.|.+++++|-+.+|.++-
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~---------~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD---------RFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh---------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 345566788999999999999998777654421 12456788999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~ 451 (558)
....+..+... .|.-++|+.+..+....
T Consensus 430 ~q~~~~~~~~~--E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 430 CQLLMLQSFLA--EDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHH--hcchHHHHHHHHHHHhh
Confidence 88888888888 89999999999887654
No 354
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.22 E-value=0.54 Score=46.77 Aligned_cols=88 Identities=17% Similarity=-0.047 Sum_probs=59.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETE-QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
+..+....|+..|.+++...|.....+.+.+.++++. =.|+.-.|+.....|++++|....+++.|+.++..++++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3344556677777777777777777777777777651 123445566666677777777777777777777777777777
Q ss_pred HHHHHHHHH
Q 048034 476 AFYYKKDLE 484 (558)
Q Consensus 476 ~~~~~~al~ 484 (558)
+.+...+..
T Consensus 465 l~~~~alq~ 473 (758)
T KOG1310|consen 465 LSCHWALQM 473 (758)
T ss_pred hhhHHHHhh
Confidence 776655544
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.07 E-value=2.1 Score=30.98 Aligned_cols=62 Identities=15% Similarity=-0.000 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
....|.-++...+.++|+..++++++..+...+.|..|+ ++..+|.+.|++.+.+.+-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG----------------------~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLG----------------------YLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 455688888999999999999999999998888777763 3477889999999988765
Q ss_pred HHHH
Q 048034 259 EYLQ 262 (558)
Q Consensus 259 ~~~~ 262 (558)
.+=+
T Consensus 67 ~~Q~ 70 (80)
T PF10579_consen 67 LQQL 70 (80)
T ss_pred HHHH
Confidence 5443
No 356
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.83 E-value=2.6 Score=39.33 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
..++..++..+.. .|+++.++..+++.+..+|-+...|..+-..|.+.|+...|+..|++.-+......+..|.
T Consensus 153 ~~~l~~lae~~~~--~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 153 IKALTKLAEALIA--CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 3456677777877 8888888888888888888888888888888888888888888888877755444444443
No 357
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.76 E-value=21 Score=38.21 Aligned_cols=362 Identities=12% Similarity=0.035 Sum_probs=180.3
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhc------CHHH--------hhcCCCCchHH
Q 048034 171 NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCT------TIDI--------LNSINLNNHWM 236 (558)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------~~~~--------~~~l~~~~~~~ 236 (558)
.++.+...+..+-.++...|++++-...=.++..+.|.++..|.....-.. .... +.....+..|.
T Consensus 108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~ 187 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWE 187 (881)
T ss_pred ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHH
Confidence 344455556666667788888877777767777777777776665432111 0000 11111223332
Q ss_pred HH--HHH--HHHHHHHhchHHHHHHHHHHHhhcCC----C---hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcch
Q 048034 237 KD--FFL--ASTYQELRMHNEALTKYEYLQGTFGF----S---NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVED 305 (558)
Q Consensus 237 ~~--~~~--a~~~~~~~~~~~A~~~~~~~~~~~p~----~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 305 (558)
.. |+. +..+...++++.-...|.+++..--. - ...+...-..+...-..++-+.+|...+... .+.+.
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~ 266 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDT 266 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhh
Confidence 22 222 22234556677777788887763111 1 1223334444444444566677777766643 22221
Q ss_pred HH-HHHHH------HHhcCCH-------hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH
Q 048034 306 MD-MYSNV------LYAKECF-------SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 306 ~~-~~~~~------l~~~~~~-------~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
.. .+... .....+. .+....+.+.++..+..-..|...-+.-...|++..-...+++++.-.+...
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~ 346 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDR 346 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccH
Confidence 11 01111 0111222 2223334445555666666777777778888998888888999988888878
Q ss_pred HHHHHhchhcc--------------------ccchHHHHHhHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048034 372 SAWTLMGHEYK--------------------SIDYRAWYGLGQAYEMMHMP-FYALHYFRKSVFLQPNDSRLWIAMAQCY 430 (558)
Q Consensus 372 ~~~~~~~~~~~--------------------~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~ 430 (558)
..|+..|.... |.....|-.--..+.+.+.. ..-...+.+++.. ...+.+....|
T Consensus 347 ~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~~~~~~~ 422 (881)
T KOG0128|consen 347 ALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELHNDYLAY 422 (881)
T ss_pred HHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 88887775443 11111111111111111111 1111122222211 00111111222
Q ss_pred HH------------HhcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhhhcCCCh
Q 048034 431 ET------------EQLHMLEEAIKCYRRAANC-NDSEAIALNQLAKLHH-ALGRDEEAAFYYKKDLERMEAEEREGPNM 496 (558)
Q Consensus 431 ~~------------~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 496 (558)
.. .-...+..|...|...... .......+...|.++. .+++.+.|..+++..+.. .....
T Consensus 423 rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty------~~~~i 496 (881)
T KOG0128|consen 423 RRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY------GGGSI 496 (881)
T ss_pred HHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC------CcchH
Confidence 11 0012233444444443333 1222335555566554 357788888888776651 12222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHh
Q 048034 497 VEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMA 544 (558)
Q Consensus 497 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~ 544 (558)
...|+....+-...|+...+..++++|+.. +.+.+.+..++....++
T Consensus 497 ag~Wle~~~lE~~~g~~~~~R~~~R~ay~~-~~~~~~~~ev~~~~~r~ 543 (881)
T KOG0128|consen 497 AGKWLEAINLEREYGDGPSARKVLRKAYSQ-VVDPEDALEVLEFFRRF 543 (881)
T ss_pred HHHHHHHHhHHHHhCCchhHHHHHHHHHhc-CcCchhHHHHHHHHHHH
Confidence 236677777777889999999988888863 44554444444444333
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.32 E-value=0.3 Score=26.94 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLV 200 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~ 200 (558)
|.+.+.+|.++...|++++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4578899999999999999999876
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.27 E-value=1.7 Score=38.08 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHH
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
++++..+.+|.+|. ..+.++|+..+.+++.+.+.... -++.++..|+.+|..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-----------~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-----------FNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHHHhcchhhhh
Confidence 56888888998887 67889999999999998766432 26778999999999999998874
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.22 E-value=1.5 Score=31.77 Aligned_cols=62 Identities=15% Similarity=0.044 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 341 CIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 341 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
..-|.-++...+.++|+..++++++..++....+..+| .+..+|...|+|.+.+.+-.+=+.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG------------~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLG------------YLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567889999999999999999888776555444 678899999999998887655443
No 361
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.04 E-value=12 Score=38.28 Aligned_cols=172 Identities=11% Similarity=0.074 Sum_probs=109.1
Q ss_pred hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc-------------
Q 048034 349 LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL------------- 415 (558)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------------- 415 (558)
....|++|...|.-+....+.+.....+..+ |.+......++.+...+|+.+.|....++++-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ss---PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISS---PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccC---CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 3456788998888887765443222111111 778889999999999999988776666655421
Q ss_pred --------CCCCHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 048034 416 --------QPNDSRLWIA---MAQCYETEQLHMLEEAIKCYRRAANCNDS-EAIALNQLAKLHH-ALGRDEEAAFYYKKD 482 (558)
Q Consensus 416 --------~p~~~~~~~~---la~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a 482 (558)
.|.|...+.. .-..+.+ .|-+.-|.++++-.++++|. +|.+...+..+|. +..+|+=-+..++..
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~--RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQ--RGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1223333322 2333445 79999999999999999998 8887766666664 445565555555443
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCC
Q 048034 483 LERMEAEEREGPNMVEALIFLATHCRAHNR---FEDAEVYCTRLLDYTG 528 (558)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 528 (558)
-. +... ..-|+. ..-..+|..|..... -+.|...+.+|+...|
T Consensus 405 e~-~n~l-~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 405 EN-MNKL-SQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred Hh-hccH-hhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 22 1100 022432 223346777776665 6788999999998875
No 362
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.74 E-value=0.71 Score=42.77 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=71.7
Q ss_pred HHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHH-HH
Q 048034 198 VLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQ-IA 276 (558)
Q Consensus 198 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~a 276 (558)
.|.++-...|.++..|... +..-.+.|.+.+--..|.+++..+|.+.++|.. -+
T Consensus 95 ~~~R~tnkff~D~k~w~~y-------------------------~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~ 149 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQY-------------------------AAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCA 149 (435)
T ss_pred eeehhhhcCCCCcHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeecc
Confidence 4556666777787777665 555566778888889999999999999998876 56
Q ss_pred HHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHH
Q 048034 277 KAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSN 311 (558)
Q Consensus 277 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (558)
.-+...++++.+...|.+.+..+|.++..+..+-.
T Consensus 150 ~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 150 FELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred chhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 67788899999999999999999999887766543
No 363
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.68 E-value=5.5 Score=37.20 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=59.8
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~ 451 (558)
...++..++..+...|+++.+...+++.+..+|.+-.+|..+-..|.. .|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~--~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV--NGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH--cCCchHHHHHHHHHHHH
Confidence 345778899999999999999999999999999999999999999999 99999999999987664
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=1.9 Score=39.61 Aligned_cols=74 Identities=18% Similarity=-0.006 Sum_probs=62.9
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
...++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+ +|-+.-|+..++..+...|+++.+-...+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q--l~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ--LGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh--cCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 445566778888999999999999999999999999999999999 99999999999999999998877554433
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.61 E-value=0.79 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHhHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 048034 388 AWYGLGQAYEMMHMPFYALHY--FRKSVFLQPN 418 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~--~~~a~~~~p~ 418 (558)
.|+.+|..+...|++++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 466667777777777777777 3355555543
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.49 E-value=3.6 Score=36.04 Aligned_cols=73 Identities=23% Similarity=0.169 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHH
Q 048034 401 MPFYALHYFRKSVFL-QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS----EAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 401 ~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A 475 (558)
.-+.|...|-++-.. .-+++.+...+|..|.+ .+.++|+..+.+++++.+. ++.++..|+.++.++|+++.|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k---rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTK---RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345677777665432 22578999999998875 8999999999999998543 588999999999999999988
Q ss_pred H
Q 048034 476 A 476 (558)
Q Consensus 476 ~ 476 (558)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.47 E-value=0.86 Score=27.49 Aligned_cols=33 Identities=18% Similarity=0.048 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHH--HHHHhhhCCCC
Q 048034 177 FILYLYGLVLKDKGSENLARTV--LVESVNSYPWN 209 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~--~~~al~~~p~~ 209 (558)
..++-+|-.+..+|++++|+.. |.-+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4578889999999999999999 54777777654
No 368
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.32 E-value=1 Score=42.58 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048034 405 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 468 (558)
Q Consensus 405 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 468 (558)
|..+|.+|..+.|.+...++.+|.++.. .|+.-+|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~--~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY--QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH--TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc--ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999 9999999999999998766668888888888887
No 369
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=19 Score=35.11 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
+..|.+|.+...+++|..|.++|-+|+...|+
T Consensus 248 RY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 248 RYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 44455555555555555555555555555554
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.12 E-value=2.4 Score=41.13 Aligned_cols=60 Identities=25% Similarity=0.196 Sum_probs=53.8
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 449 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al 449 (558)
+--.|..+|.++++++.|+....+.+.++|....-+...|.|+.. +.+|.+|.+.+--+.
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~--LeRy~eAarSamia~ 289 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRR--LERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999 999999988776553
No 371
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.86 E-value=0.46 Score=26.18 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 498 EALIFLATHCRAHNRFEDAEVYCT 521 (558)
Q Consensus 498 ~~~~~la~~~~~~g~~~~A~~~~~ 521 (558)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 372
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.63 E-value=12 Score=32.07 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHh-----hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc-----C--CHHH
Q 048034 337 PESCCIIGNYYS-----LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM-----H--MPFY 404 (558)
Q Consensus 337 ~~~~~~lg~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----~--~~~~ 404 (558)
+..++.+|..+. ..++...|++.|..+-..+ . +.+...+|.++..- + +..+
T Consensus 68 ~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n--~---------------~~aC~~~gLl~~~g~~~r~~dpd~~K 130 (248)
T KOG4014|consen 68 PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN--I---------------PQACRYLGLLHWNGEKDRKADPDSEK 130 (248)
T ss_pred cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC--C---------------HHHHhhhhhhhccCcCCccCCCCcHH
Confidence 455666666554 2345667777777766533 1 12334444443321 1 2456
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH----------------------HhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 048034 405 ALHYFRKSVFLQPNDSRLWIAMAQCYET----------------------EQLHMLEEAIKCYRRAANCNDSEAIALNQL 462 (558)
Q Consensus 405 A~~~~~~a~~~~p~~~~~~~~la~~~~~----------------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 462 (558)
|..++.++..+. +..+.++|...|.. .-..+.+.|.++--+|-+++ ++.+.-++
T Consensus 131 a~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~ 206 (248)
T KOG4014|consen 131 AERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANV 206 (248)
T ss_pred HHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhH
Confidence 777777776554 33344444444432 00355677777777776654 56667777
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHHHHHhh
Q 048034 463 AKLHHAL----GRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 463 a~~~~~~----g~~~~A~~~~~~al~~~~~~ 489 (558)
.+.|..- ++.++|..+-+++.++.+..
T Consensus 207 SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 207 SRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred HHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 7776542 35678888888888865543
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.25 E-value=13 Score=34.72 Aligned_cols=107 Identities=11% Similarity=-0.024 Sum_probs=63.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEAIALNQLAKLHHALGRD 472 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g~~ 472 (558)
..++|++|+..+... +..+.+ .|++.-|.....-.++. .+.+.....+++.+....+.-
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~--~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLK--HGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHH--TT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHH--------------HHHHHH--CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 456777777766543 334444 55555554444333322 234445556777777777654
Q ss_pred H-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 473 E-EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCT 521 (558)
Q Consensus 473 ~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 521 (558)
+ +-....+++++.. +.+.....++..+..+|..+.+.|++.+|..+|-
T Consensus 66 ~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 66 EPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4 4566777777766 4444556789999999999999999999998885
No 374
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.12 E-value=6.5 Score=38.35 Aligned_cols=61 Identities=21% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+-..+..||.. +++.+-|+..--+.+.++|....-+...|.++..+.+|.+|...+--+.=
T Consensus 230 Ietklv~CYL~--~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 230 IETKLVTCYLR--MRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHHhhhh--cCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999 99999999999999999999999999999999999999999887665544
No 375
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=89.02 E-value=1.4 Score=43.94 Aligned_cols=91 Identities=3% Similarity=-0.138 Sum_probs=70.2
Q ss_pred HHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc---CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHH
Q 048034 280 YSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK---ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKS 356 (558)
Q Consensus 280 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~---~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 356 (558)
+..+....|+..|.+++...|.....+...+.++... ++.-.|..-.+.++.++|....+|+.|+.++...+++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3445566777888888888887777777777766654 5555666677778888888888999999999999999999
Q ss_pred HHHHHHHHccCcCC
Q 048034 357 VVYFRRALKLNKNY 370 (558)
Q Consensus 357 ~~~~~~al~~~p~~ 370 (558)
+.+...+....|.+
T Consensus 465 l~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 465 LSCHWALQMSFPTD 478 (758)
T ss_pred hhhHHHHhhcCchh
Confidence 99888777777754
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.98 E-value=21 Score=33.79 Aligned_cols=192 Identities=13% Similarity=0.020 Sum_probs=95.7
Q ss_pred chHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccc
Q 048034 304 EDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKS 383 (558)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 383 (558)
..-+......+...+..+-...++.+++++|..+.++..++.-- .--..+|.+.|++|++....
T Consensus 185 r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~-------------- 248 (556)
T KOG3807|consen 185 RPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET-------------- 248 (556)
T ss_pred ChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH--------------
Confidence 33344444455555556666666667777776666666655422 22344566666666654322
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH--HHH
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRL--WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA--IAL 459 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~--~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~ 459 (558)
.+...+.....|...+| ......+..+ -..++.|..+ +|+..+|++.++...+-.|-.. .+.
T Consensus 249 -----~yr~sqq~qh~~~~~da-------~~rRDtnvl~YIKRRLAMCARk--lGrlrEA~K~~RDL~ke~pl~t~lnih 314 (556)
T KOG3807|consen 249 -----IYRQSQQCQHQSPQHEA-------QLRRDTNVLVYIKRRLAMCARK--LGRLREAVKIMRDLMKEFPLLTMLNIH 314 (556)
T ss_pred -----HHhhHHHHhhhccchhh-------hhhcccchhhHHHHHHHHHHHH--hhhHHHHHHHHHHHhhhccHHHHHHHH
Confidence 11111111112211111 1112223333 3467888888 9999999999988777666322 244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH-------------HHHcCC---HHHHHHHHHHH
Q 048034 460 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH-------------CRAHNR---FEDAEVYCTRL 523 (558)
Q Consensus 460 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-------------~~~~g~---~~~A~~~~~~a 523 (558)
-++...+..+.-|.+....+-+.-++ .-|......+.-|.+ -.+.|- -..|++...++
T Consensus 315 eNLiEalLE~QAYADvqavLakYDdi------slPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRA 388 (556)
T KOG3807|consen 315 ENLLEALLELQAYADVQAVLAKYDDI------SLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRA 388 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc------cCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHH
Confidence 45555555554444433333332221 123333332221111 112221 24688889999
Q ss_pred hccCCCcH
Q 048034 524 LDYTGPEK 531 (558)
Q Consensus 524 l~~~~~~~ 531 (558)
++.+|.-+
T Consensus 389 vEFNPHVP 396 (556)
T KOG3807|consen 389 VEFNPHVP 396 (556)
T ss_pred hhcCCCCc
Confidence 99887544
No 377
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=19 Score=35.31 Aligned_cols=170 Identities=10% Similarity=0.004 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHH
Q 048034 193 NLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQ 272 (558)
Q Consensus 193 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 272 (558)
.++++.=.+.+..+|....+|.---.++.....-. ...-.......++-+.....++..+|++-.+|
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~-------------~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW 112 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA-------------QLEPLEKQALLDEELKYVESALKVNPKSYGAW 112 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh-------------cCCHHHHHHhhHHHHHHHHHHHHhCchhHHHH
Confidence 45666667777778877766643211111000000 01122333456777888999999999999999
Q ss_pred HHHHHHHHHcc--cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc----CCHhHHHHHHHHHhhcCCCChhHHHHHHHH
Q 048034 273 AQIAKAQYSLR--EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK----ECFSALSYLAHRVFTTDKYRPESCCIIGNY 346 (558)
Q Consensus 273 ~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~----~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~ 346 (558)
.....++.+.+ ++..-+.+.+++++.+|.+..++...--+.-.. ....+-.....+++..++.+-.+|.....+
T Consensus 113 ~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 113 HHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHH
Confidence 99999998766 468889999999999999999887655554433 224555667777888888888888877766
Q ss_pred Hhh------cCC------hHHHHHHHHHHHccCcCCHHHHH
Q 048034 347 YSL------KGQ------HEKSVVYFRRALKLNKNYLSAWT 375 (558)
Q Consensus 347 ~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~ 375 (558)
... .|. ...-+.....|+-.+|++..+|+
T Consensus 193 L~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 193 LSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred HHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 652 231 23456667778888999887764
No 378
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.77 E-value=13 Score=39.80 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=37.4
Q ss_pred HHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 048034 311 NVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKL 366 (558)
Q Consensus 311 ~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 366 (558)
.++.++..+.-|..+++.--.-.....+.+...|..++.+|++++|...|-+++..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 44444555555555554422222223567778899999999999999999998864
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.62 E-value=16 Score=33.54 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHH-HHcCCHHHHHHHHHHHhc
Q 048034 472 DEEAAFYYKKDLERMEAE-EREGPNMVEALIFLATHC-RAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~ 525 (558)
.+.|...|++|++..... ...+|-.....++.+..| ...|+.++|++..+++++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 378899999999977653 222333333444445444 568999999998888864
No 380
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.32 E-value=26 Score=35.30 Aligned_cols=159 Identities=16% Similarity=0.025 Sum_probs=91.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC--------------HHHH
Q 048034 340 CCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM--------------PFYA 405 (558)
Q Consensus 340 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~--------------~~~A 405 (558)
...+|++++..++|+-|...|+.+.+-. .+..+|..++ .+.-..|.+....+. ++.|
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df-~~Dkaw~~~A--------~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A 281 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDF-KNDKAWKYLA--------GAQEMAALSLLMQGQSISAKIRKDEIEPYLENA 281 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHH-hhchhHHHHH--------hHHHHHHHHHHhcCCCCccccccccHHHHHHHH
Confidence 4579999999999999999999877633 2334454444 233444445444442 2334
Q ss_pred HHHHHHH----HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC-----cHHHHHHHHHHHHHcCCHHH
Q 048034 406 LHYFRKS----VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--NDS-----EAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 406 ~~~~~~a----~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~--~~~-----~~~~~~~la~~~~~~g~~~~ 474 (558)
...|.++ ......-.++....+.++.. .|.+.+|...+-++... ..+ ....+-..|.++
T Consensus 282 ~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~--~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~-------- 351 (414)
T PF12739_consen 282 YYTYLKSALPRCSLPYYALRCALLLAELLKS--RGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY-------- 351 (414)
T ss_pred HHHHHhhhccccccccchHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------
Confidence 4444442 11112334566667777777 88888877777666544 211 222333444444
Q ss_pred HHHHHHHHHHHHHhhhhcCCC-----hHHHHH-HHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 475 AAFYYKKDLERMEAEEREGPN-----MVEALI-FLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 475 A~~~~~~al~~~~~~~~~~~~-----~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
..+. .....+. -...+. .-|.-|.+.|+...|..+|.+++..-
T Consensus 352 ------~~~~----~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 352 ------ASLR----SNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred ------cccc----cCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 0000 0000011 111222 23788999999999999999998754
No 381
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.31 E-value=0.83 Score=27.92 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 367 (558)
+++..+|.+....++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999864
No 382
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.12 E-value=4.1 Score=37.70 Aligned_cols=70 Identities=23% Similarity=0.131 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
+...+..|.. .|.+.+|+.+.++++.++|-+...+..+-.++..+|+--.|...|++.-+.+....+.+-
T Consensus 282 lgkva~~yle--~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 282 LGKVARAYLE--AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHH--cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 3455677778 899999999999999999988889999999999999988899888888776665554443
No 383
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.99 E-value=4.1 Score=37.54 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHH
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEAL 500 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 500 (558)
++..++=..+.. .++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|+..++..++. .|+.+.+-
T Consensus 182 rll~~lk~~~~~--e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~-------~P~~~~a~ 252 (269)
T COG2912 182 RLLRNLKAALLR--ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH-------CPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHH--hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh-------CCCchHHH
Confidence 445566677888 999999999999999999999999999999999999999999999999984 46555554
Q ss_pred HH
Q 048034 501 IF 502 (558)
Q Consensus 501 ~~ 502 (558)
..
T Consensus 253 ~i 254 (269)
T COG2912 253 MI 254 (269)
T ss_pred HH
Confidence 43
No 384
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.96 E-value=41 Score=35.94 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=19.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHH
Q 048034 505 THCRAHNRFEDAEVYCTRLLDYTGPEKETAKSM 537 (558)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 537 (558)
.-++..|++++|++.+++.- +-|.+.......
T Consensus 513 f~~~~~g~~~~AL~~i~~L~-liP~~~~~V~~~ 544 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKLD-LIPLDPSEVRRC 544 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHTT--S-S-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCC-CCCCCHHHHHHH
Confidence 34577899999999998765 446666554433
No 385
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.81 E-value=3.4 Score=46.19 Aligned_cols=139 Identities=17% Similarity=0.074 Sum_probs=108.4
Q ss_pred hHHHHHhHHHHHHcCCHHHHHH------HHHH-HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------
Q 048034 386 YRAWYGLGQAYEMMHMPFYALH------YFRK-SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN------ 452 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~------~~~~-a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~------ 452 (558)
..-...-|+.....|.+.+|.+ .+.. .-.+.|.....+..++.++.. .|++++|+..-.++.-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~--~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR--LGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh--hcchHHHHHhcccceeeechhccC
Confidence 3445566777777788887777 5552 334567888999999999999 999999999888876542
Q ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 453 --DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE-REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 453 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
|+....+.+++......++...|...+.++.....-.. ...|.......+++.++...++++.|+.+.+.|+..
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455888899888999999999999999888543222 236777777788999999999999999999999874
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.44 E-value=26 Score=33.14 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC--cchHHHHHHHHHhcCCHhHHHHHHHHHhhcC-CCChhHHHHHHHH
Q 048034 270 YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR--VEDMDMYSNVLYAKECFSALSYLAHRVFTTD-KYRPESCCIIGNY 346 (558)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~-~~~~~~~~~lg~~ 346 (558)
.+...+|.|..++|+..+|++.++.+.+..|-. ......+...+.....+.....++.+.-++. |.++..++.-+..
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALL 355 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALL 355 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHH
Confidence 355668888899999999999999888766621 1122333344444455555544444433332 3444444432221
Q ss_pred H-------------hhcCC---hHHHHHHHHHHHccCcCCHHHHHHh
Q 048034 347 Y-------------SLKGQ---HEKSVVYFRRALKLNKNYLSAWTLM 377 (558)
Q Consensus 347 ~-------------~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~ 377 (558)
- .+.|- -..|++...+|++.+|.-+.....+
T Consensus 356 K~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 356 KTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 1 12221 1358888999999998866544433
No 387
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=24 Score=34.62 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048034 352 QHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM--PFYALHYFRKSVFLQPNDSRLWIAMAQC 429 (558)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~ 429 (558)
-.++-+.+...+++.+|+ ++.+|+....++.+.+. +..=+...+++++.+|.+-..|...=.+
T Consensus 90 ~ld~eL~~~~~~L~~npk---------------sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPK---------------SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred hhHHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 456677888888999988 55678888888887664 5788999999999999999888776555
Q ss_pred HHHH--hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhhhhcCCChHHHHH
Q 048034 430 YETE--QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL------GRDEEAAFYYKKDLERMEAEEREGPNMVEALI 501 (558)
Q Consensus 430 ~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 501 (558)
.... ......+=+.+..+++.-++.+..+|.....++..+ |+ .-....+.+-++...+....+|++..+|+
T Consensus 155 ~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~-~~~~~~l~sEle~v~saiFTdp~DqS~Wf 233 (421)
T KOG0529|consen 155 VEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN-FMPKELLQSELEMVHSAIFTDPEDQSCWF 233 (421)
T ss_pred HHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc-cCCHHHHHHHHHHHHHHHhcCccccceee
Confidence 5440 022256677888899999999999999888777632 31 01133333334333333346788888877
Q ss_pred H
Q 048034 502 F 502 (558)
Q Consensus 502 ~ 502 (558)
+
T Consensus 234 Y 234 (421)
T KOG0529|consen 234 Y 234 (421)
T ss_pred e
Confidence 6
No 388
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.23 E-value=20 Score=32.88 Aligned_cols=162 Identities=13% Similarity=0.141 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCC-hHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCC--cchHHHHHHHHH
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFS-NYLQAQIAKAQY-SLREFEQVEVVFEELLRNDPYR--VEDMDMYSNVLY 314 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~-~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~l~ 314 (558)
.++|.+....|+|++.+..+.+++..++.- ..=...+..+|- ..|....+...+.......... ......+. -+
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~--~y 82 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK--DY 82 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH--HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH--HH
Confidence 456999999999999999999999986643 333334444442 3455666666666655544332 11111111 11
Q ss_pred hcCCH-------hHHHHHHHHHhhcCCCChh----HHHHHHHHHhhc-----C-----ChHHHHHHHHHHHcc-----Cc
Q 048034 315 AKECF-------SALSYLAHRVFTTDKYRPE----SCCIIGNYYSLK-----G-----QHEKSVVYFRRALKL-----NK 368 (558)
Q Consensus 315 ~~~~~-------~~a~~l~~~~~~~~~~~~~----~~~~lg~~~~~~-----~-----~~~~A~~~~~~al~~-----~p 368 (558)
...-. .+...++...+-....+++ .+-..|.+|... | -.++|...|++|+.+ .|
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~ 162 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP 162 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Confidence 11111 2233333332222222222 223456655422 1 136788889888764 45
Q ss_pred CCHHHHHHhchhccccchHHHHHhH-HHHHHcCCHHHHHHHHHHHHh
Q 048034 369 NYLSAWTLMGHEYKSIDYRAWYGLG-QAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~lg-~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.++-- . ....+.+ ..|..+|+.++|+...++|+.
T Consensus 163 ~~p~r-L-----------gl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 163 THPLR-L-----------GLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp TSHHH-H-----------HHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCcHH-H-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44431 1 1222223 344668999999888877764
No 389
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=32 Score=33.70 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=95.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhh-hCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVN-SYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
+.+.+.+....+..++++.+|..+-...+. +.-.|...+-.++ -...||+..++...|+...
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~-----------------ak~~fy~~l~~E~~~~l~~ 187 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIA-----------------AKLYFYLYLSYELEGRLAD 187 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHH-----------------HHHHHHHHHHHHhhcchHH
Confidence 345555666666778899999888777654 2222322222221 1124556777777777655
Q ss_pred HHHHHHHHHhh-----cCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 254 ALTKYEYLQGT-----FGF-SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 254 A~~~~~~~~~~-----~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
-...+...+.. +.. ...+...+-+.|...+.|+.|.....+.. .|.....
T Consensus 188 ~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~sn---------------------- 243 (493)
T KOG2581|consen 188 IRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASN---------------------- 243 (493)
T ss_pred HHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccccccc----------------------
Confidence 55555544432 111 23345567788888899999988776653 3433211
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
...+...+.+|.+...+++|..|.++|-+|+...|...
T Consensus 244 ------ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 244 ------NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred ------HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 12255778899999999999999999999999999843
No 390
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.77 E-value=2.4 Score=40.07 Aligned_cols=62 Identities=29% Similarity=0.290 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 048034 441 AIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 509 (558)
Q Consensus 441 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 509 (558)
|..+|.+|..+.|.++..++.+|.++...|+.=.|+-+|-+++- .....+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~-------~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLA-------VRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHS-------SSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999986 344457788888888877
No 391
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.35 E-value=26 Score=37.67 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVN 204 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (558)
..++..+|..+++.|++++|...|.+.+.
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 34678889999999999999999999986
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.16 E-value=1.8 Score=24.82 Aligned_cols=28 Identities=21% Similarity=0.493 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHhhhCCCCHHHHHHHH
Q 048034 190 GSENLARTVLVESVNSYPWNWNSWLELQ 217 (558)
Q Consensus 190 g~~~~A~~~~~~al~~~p~~~~~~~~l~ 217 (558)
|+.+.|..+|++++...|.+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 5678999999999999999999998764
No 393
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.79 E-value=1.5 Score=26.75 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 048034 177 FILYLYGLVLKDKGSENLARTVLVESVNS 205 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 205 (558)
.++..+|.+-...++|++|+.-|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46889999999999999999999999874
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.69 E-value=13 Score=36.85 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc
Q 048034 271 LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK 350 (558)
Q Consensus 271 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~ 350 (558)
....+.+++.-.|||..|++.++.+ +.+... +. ....+-...+++.+|-+|...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i---dl~~~~-l~----------------------~~V~~~~is~~YyvGFaylMl 177 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI---DLNKKG-LY----------------------TKVPACHISTYYYVGFAYLML 177 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc---Ccccch-hh----------------------ccCcchheehHHHHHHHHHHH
Confidence 4455778888999999999887654 221111 00 022333467889999999999
Q ss_pred CChHHHHHHHHHHHc
Q 048034 351 GQHEKSVVYFRRALK 365 (558)
Q Consensus 351 ~~~~~A~~~~~~al~ 365 (558)
++|.+|++.|...+-
T Consensus 178 rRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 178 RRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 395
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.20 E-value=6.6 Score=28.32 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHH
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 502 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 502 (558)
.+...|.-+-+.|++++|+.+|+++++.+-+.....|+.+.-...
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~y 52 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIY 52 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 344555666678999999999999998877776666776654443
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.65 E-value=9.8 Score=35.32 Aligned_cols=59 Identities=24% Similarity=0.203 Sum_probs=51.9
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 449 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al 449 (558)
....+..|...|.+.+|+.+.++++.++|-+...+..+-.++.. .|+--.|++.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~--~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT--LGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH--hccchhhhhHHHHHH
Confidence 44567788899999999999999999999999999999999999 999888888887653
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.15 E-value=19 Score=35.70 Aligned_cols=60 Identities=12% Similarity=-0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChH--HHH--HHHHHHHHcccHHHHHHHHHHHHHc
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNY--LQA--QIAKAQYSLREFEQVEVVFEELLRN 298 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~--~~a~~~~~~~~~~~A~~~~~~~l~~ 298 (558)
+..+...+..++|..|.+.++.+...-|.... .+. ..|..+...-++.+|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44677888999999999999999986444433 222 3455566788999999999998875
No 398
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.66 E-value=4 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048034 401 MPFYALHYFRKSVFLQPNDSRLWIAMAQ 428 (558)
Q Consensus 401 ~~~~A~~~~~~a~~~~p~~~~~~~~la~ 428 (558)
+++.|...|++++...|.++.+|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455566666666666666666655443
No 399
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.55 E-value=65 Score=32.75 Aligned_cols=181 Identities=13% Similarity=0.077 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCC-cchH-HHHHHH
Q 048034 236 MKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRND-PYR-VEDM-DMYSNV 312 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~-~~~~-~~~~~~ 312 (558)
|..+-++.+|.+. ..+.-...++++.+.+-++...-..++..|.. ++-..+..+|.+++... |.. ..+. .....+
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL 177 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKL 177 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHH
Confidence 3344457888777 56667778888888777777766677776665 88888888888887532 211 1111 111221
Q ss_pred HH-hcCCHhHHHHHHHHHhhcCCC-ChhHHH-HHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-----cc
Q 048034 313 LY-AKECFSALSYLAHRVFTTDKY-RPESCC-IIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-----SI 384 (558)
Q Consensus 313 l~-~~~~~~~a~~l~~~~~~~~~~-~~~~~~-~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-----~~ 384 (558)
-. .-.+.+....+..++...... ...+.+ .+-..|....++.+|+......++.+..+.-+...+...+. ..
T Consensus 178 ~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~ 257 (711)
T COG1747 178 PELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHS 257 (711)
T ss_pred HHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccch
Confidence 11 124455555555554433322 233332 33466778899999999999999999887665444332221 11
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN 418 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~ 418 (558)
+..-|.....+-..-.++.+++.-|++.+.....
T Consensus 258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred hHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 2223333444444455778888888888766544
No 400
>PF13041 PPR_2: PPR repeat family
Probab=81.50 E-value=7.8 Score=25.18 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 455 EAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 455 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+...|..+-..+.+.|++++|.++|++..+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345677788888888888888888888876
No 401
>PF12854 PPR_1: PPR repeat
Probab=81.49 E-value=4.3 Score=24.00 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 455 EAIALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 455 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
+...|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345566666666666666666666654
No 402
>PF13041 PPR_2: PPR repeat family
Probab=81.24 E-value=8 Score=25.12 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~ 451 (558)
..|+.+-..+.+ .|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~--~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCK--AGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHH--CcCHHHHHHHHHHHHHc
Confidence 345555555555 55555555555555543
No 403
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.70 E-value=3.5 Score=26.18 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 460 NQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 460 ~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+.+|..|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999999986
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.40 E-value=30 Score=28.10 Aligned_cols=44 Identities=7% Similarity=0.087 Sum_probs=35.7
Q ss_pred HHHHHHHHHHh--hcCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 048034 253 EALTKYEYLQG--TFGFSNYLQAQIAKAQYSLREFEQVEVVFEELL 296 (558)
Q Consensus 253 ~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 296 (558)
.+.++|..+.. +....+..+...|..+...|++++|.++|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 77778877766 566678888889999999999999999998764
No 405
>PF12854 PPR_1: PPR repeat
Probab=77.93 E-value=6.7 Score=23.16 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
|...|..+-..|.+ .|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck--~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCK--AGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHH--CCCHHHHHHHHHh
Confidence 45567777777777 7777777777765
No 406
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=76.78 E-value=19 Score=29.28 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC
Q 048034 307 DMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 307 ~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 367 (558)
+.--.++...++.+++..+...+...+..+|+....+|.+|...|+..+|-+.+++|-+..
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3334556677888888888888888778889999999999999999999999999987643
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=76.67 E-value=66 Score=30.03 Aligned_cols=290 Identities=12% Similarity=0.013 Sum_probs=147.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHH
Q 048034 180 YLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYE 259 (558)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 259 (558)
.-+++-..+.+++++|+..|.+.+.....-.+...+ ..-.....++.+|...|++..--+...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n-----------------EqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN-----------------EQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh-----------------HHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345666778889999999999998763322111110 111112234777777777654433332
Q ss_pred HHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh--HHHHHHHHHhhcCCCCh
Q 048034 260 YLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS--ALSYLAHRVFTTDKYRP 337 (558)
Q Consensus 260 ~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~--~a~~l~~~~~~~~~~~~ 337 (558)
..-+ ++...+ -.+..+..+.+++..|...+.+.....++...-.+. +-...++ -
T Consensus 70 ~sre-------~m~~ft--------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr---------~ 125 (421)
T COG5159 70 SSRE-------AMEDFT--------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLR---------L 125 (421)
T ss_pred hhHH-------HHHHhc--------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 2211 111100 012223445555555554444332222211110000 0000111 2
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc--
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL-- 415 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-- 415 (558)
..-+.+...++..|+|.+|+....-.+.--....+- +.-...+..-..+|....+..++...+..|-..
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK---------~~Li~vhllESKvyh~irnv~KskaSLTaArt~An 196 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK---------INLITVHLLESKVYHEIRNVSKSKASLTAARTLAN 196 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc---------cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhh
Confidence 344567888999999999998877655321111100 112345666677788888777777776655432
Q ss_pred ---CCCCHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcHHHHH-----HHHHHHHHcCCHHHHHHHHH--
Q 048034 416 ---QPNDSRLW--IAMAQCYETEQLHMLEEAIKCYRRAANCND---SEAIALN-----QLAKLHHALGRDEEAAFYYK-- 480 (558)
Q Consensus 416 ---~p~~~~~~--~~la~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~-----~la~~~~~~g~~~~A~~~~~-- 480 (558)
+|....+- ..-|..... -.+|.-|..+|-++++-.. .+..+.. .+..+. .+..++-...++
T Consensus 197 s~YCPpqlqa~lDL~sGIlhcd--d~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K 272 (421)
T COG5159 197 SAYCPPQLQAQLDLLSGILHCD--DRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVKAVLRNK 272 (421)
T ss_pred ccCCCHHHHHHHHHhccceeec--cccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHHHHHccc
Confidence 23222211 222455556 7789999999999887532 2333322 223332 233333332222
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCCC
Q 048034 481 KDLERMEAEEREGPNMVEALIFLATHCRA--HNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 481 ~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~ 529 (558)
..++. .......+....+..+-. ..+|.+|..-|..-+..+|-
T Consensus 273 ~t~~~------y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 273 NTLKH------YDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred hhHhh------hhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 22221 223445666666666633 46788898888887776643
No 408
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=76.57 E-value=73 Score=30.54 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=112.1
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHc----CC--CCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC--CCC-----hhH
Q 048034 273 AQIAKAQYSLREFEQVEVVFEELLRN----DP--YRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD--KYR-----PES 339 (558)
Q Consensus 273 ~~~a~~~~~~~~~~~A~~~~~~~l~~----~p--~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~--~~~-----~~~ 339 (558)
..+...|+..++|.+|+.....++.. +. .-++....-+.+++...+..++...+..+-... -+. +..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 45788899999999999988777642 22 223445556777888877777766554433221 111 122
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHccCcC---CHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHH--HHHHHh
Q 048034 340 CCIIGNYYSLKGQHEKSVVYFRRALKLNKN---YLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHY--FRKSVF 414 (558)
Q Consensus 340 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~--~~~a~~ 414 (558)
-..-|.++....+|.-|..||-.|++-... ...+.+ ++-.+-.+-...+..++--.. -+.+++
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~------------sLKYMlLcKIMln~~ddv~~lls~K~~l~ 279 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALT------------SLKYMLLCKIMLNLPDDVAALLSAKLALK 279 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHH------------HHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence 334467777779999999999999875322 122222 122222333455666654333 345666
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
....+..+...++..+.+..+.+|+.|+..|..-+..+|- +...+..+|
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i---vr~Hl~~Ly 328 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI---VRSHLQSLY 328 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH---HHHHHHHHH
Confidence 6777788888888888764467889999999888776653 334444443
No 409
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.34 E-value=73 Score=30.38 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=79.5
Q ss_pred hchhHHHHHHHHHHhhhCC--CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCC
Q 048034 154 VNRELISLERELSTLRKNG--TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINL 231 (558)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~~--~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~ 231 (558)
.+..++++.+.+++..++. ..-..++..+|..|.+.|+.+.|.+.+.+.....-. ++.
T Consensus 80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs--------------------~g~ 139 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS--------------------LGH 139 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh--------------------ccc
Confidence 3455666666666665542 223568999999999999999999999988763321 011
Q ss_pred Cch-HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC
Q 048034 232 NNH-WMKDFFLASTYQELRMHNEALTKYEYLQGTFGF---SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDP 300 (558)
Q Consensus 232 ~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 300 (558)
.-+ .....-+|..|....-..+.++....+++...+ -.......|.......+|.+|-.+|-..+....
T Consensus 140 kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 140 KIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred chhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 111 111122466666555555555555555543222 123455677888888999999999988876543
No 410
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.74 E-value=86 Score=35.32 Aligned_cols=189 Identities=10% Similarity=0.131 Sum_probs=112.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcC--HHHhhcCCCCchHH-HHHH-HH-HHHHHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTT--IDILNSINLNNHWM-KDFF-LA-STYQEL 248 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~l~~~~~~~-~~~~-~a-~~~~~~ 248 (558)
.++..-+.+|.+|...|...+|+.+|.++..-... +++...+.....- ....+.-.....|. .+|+ .+ .++.+-
T Consensus 918 lk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge-~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~h 996 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGE-GNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEH 996 (1480)
T ss_pred hHHHHHHhhheeeecCCchHHHHHHHHHHhhcccc-HHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999876543 3466655433211 11111111223332 3444 33 344455
Q ss_pred hchHHHHHHHHHHHhhcCCC----hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC---cchHHHHHHHHHhcCCHhH
Q 048034 249 RMHNEALTKYEYLQGTFGFS----NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR---VEDMDMYSNVLYAKECFSA 321 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~l~~~~~~~~ 321 (558)
+-.+.+.+.-.++++.-|++ +.+...+-.-+...|.+-+|...+ -.+|+. .+.+..+..+++..|..+.
T Consensus 997 n~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 997 NHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred ccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 56678888888888854432 334445556666778888776543 334542 2445556666776655543
Q ss_pred ------------HHH-HHHHHhhcCCC-ChhHHHHHHHHHhhcCChHHHHH-HHHHHHccC
Q 048034 322 ------------LSY-LAHRVFTTDKY-RPESCCIIGNYYSLKGQHEKSVV-YFRRALKLN 367 (558)
Q Consensus 322 ------------a~~-l~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~ 367 (558)
... +...+....|. .+..+..+--.+..++++.+|-. .|+.+..+.
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 333 44444444443 44555566666778888887654 466665543
No 411
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=75.50 E-value=79 Score=30.36 Aligned_cols=272 Identities=11% Similarity=0.009 Sum_probs=153.3
Q ss_pred HHHHHHHhchHHHHHHHHHHHhh--cCCC--------hHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCCc--chH
Q 048034 242 ASTYQELRMHNEALTKYEYLQGT--FGFS--------NYLQAQIAKAQYSLREFEQVEVVFEELLRN---DPYRV--EDM 306 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~--~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~--~~~ 306 (558)
+.......++++++..+.+++.. .|.+ ......++..+...|+.++-.......... -+..- ...
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 55556666778888888888873 2222 235567888999988877655544433221 11100 000
Q ss_pred HHHHHH-HHhcCCHhHHHHHHHHHhhcCCC------ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhch
Q 048034 307 DMYSNV-LYAKECFSALSYLAHRVFTTDKY------RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGH 379 (558)
Q Consensus 307 ~~~~~~-l~~~~~~~~a~~l~~~~~~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 379 (558)
..+... +..-+..+.-..++..+++-... +-..-..+...|...++|.+|+......+.--....+-
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK------ 164 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDK------ 164 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc------
Confidence 011111 11112222333333333322111 11234568889999999999998877665422111000
Q ss_pred hccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC-----CCCH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048034 380 EYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ-----PNDS--RLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 452 (558)
Q Consensus 380 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----p~~~--~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~ 452 (558)
+.-..++..-..+|..+.+..+|...+..|-... |... ..=..-|..+.. ..+|.-|..+|-+|++-.
T Consensus 165 ---~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~--ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 165 ---ILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAA--EKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred ---cceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeec--ccccchHHHHHHHHHccc
Confidence 1122355566778888888888888877665431 2111 112233566666 789999999999998753
Q ss_pred C---CcHH---HHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHhhhhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 048034 453 D---SEAI---ALNQLAKLHHALGRDEEAAFYYK--KDLERMEAEEREGPNMVEALIFLATHCRAH--NRFEDAEVYCTR 522 (558)
Q Consensus 453 ~---~~~~---~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~ 522 (558)
. ++.. ++-.+-.+-...+..++--..+. .+++ ....+..+....|..+.+. .+|+.|..-|+.
T Consensus 240 ~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~-------y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~ 312 (411)
T KOG1463|consen 240 DSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK-------YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKK 312 (411)
T ss_pred cccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh-------ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence 2 2233 33333344445666665444433 3343 3345577888888887554 689999999998
Q ss_pred HhccCCCcH
Q 048034 523 LLDYTGPEK 531 (558)
Q Consensus 523 al~~~~~~~ 531 (558)
=+..+|--.
T Consensus 313 eL~~D~ivr 321 (411)
T KOG1463|consen 313 ELAEDPIVR 321 (411)
T ss_pred HHhcChHHH
Confidence 888775433
No 412
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.17 E-value=79 Score=33.76 Aligned_cols=102 Identities=12% Similarity=0.192 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcch------HHHHHHHHHhc---CCHhHHHHHHHHHhhc-CCCCh
Q 048034 268 SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVED------MDMYSNVLYAK---ECFSALSYLAHRVFTT-DKYRP 337 (558)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~~~~~~l~~~---~~~~~a~~l~~~~~~~-~~~~~ 337 (558)
.+++...+-..|....+|+.-+++.+.+-. -|+..+. ...|+-.+-.. |+.++|....-.+++. .+-.|
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 456666777778888888888887776544 3322111 11223333332 7777777766666654 45578
Q ss_pred hHHHHHHHHHhh---------cCChHHHHHHHHHHHccCcCC
Q 048034 338 ESCCIIGNYYSL---------KGQHEKSVVYFRRALKLNKNY 370 (558)
Q Consensus 338 ~~~~~lg~~~~~---------~~~~~~A~~~~~~al~~~p~~ 370 (558)
+.+|..|.+|-. .+..+.|+.+|++|++..|..
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 889999998863 355688999999999999874
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.16 E-value=25 Score=36.29 Aligned_cols=102 Identities=16% Similarity=-0.015 Sum_probs=68.8
Q ss_pred HHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 244 TYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
+.++.|+++.|.++..++ ++..-|..+|.+....+++..|.++|.++.... .+-.++...|+.+...
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHH
Confidence 456788888888876654 466778899999999999999999999885421 1222233345555555
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 363 (558)
.+...+-+....+. --.+|...|+++++++.+...
T Consensus 713 ~la~~~~~~g~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 55555444444332 224577889999888877654
No 414
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.69 E-value=55 Score=31.04 Aligned_cols=22 Identities=18% Similarity=-0.007 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHcCCHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYF 409 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~ 409 (558)
....|+.+|...++|..|-..+
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L 126 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVL 126 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 3445566666666666655544
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.67 E-value=69 Score=31.84 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=43.6
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHH--HHHhcCCHHHHHHHHHHHHhc
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR--LWIAMAQCY--ETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~--~~~~la~~~--~~~~~~~~~~A~~~~~~al~~ 451 (558)
...+...+..++|..|...+......-|.+.. .+..+..+| .. .-++.+|.+.+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD--~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD--RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHH
Confidence 34566777899999999999999875343333 444454444 45 78899999999998765
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.32 E-value=1e+02 Score=30.35 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH---HHHHHhcCCHhHHHHHHHHHhhcC--------CCChhH
Q 048034 271 LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY---SNVLYAKECFSALSYLAHRVFTTD--------KYRPES 339 (558)
Q Consensus 271 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~---~~~l~~~~~~~~a~~l~~~~~~~~--------~~~~~~ 339 (558)
++..+|..|...|+++.|++.|.++.............. ..+-..++++........++...- .-.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 556688888889999999999988766554444333333 333445577777766666655441 113446
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHc
Q 048034 340 CCIIGNYYSLKGQHEKSVVYFRRALK 365 (558)
Q Consensus 340 ~~~lg~~~~~~~~~~~A~~~~~~al~ 365 (558)
.|.-|.+....++|..|..+|-.+..
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77888888888899999999877644
No 417
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.03 E-value=95 Score=29.77 Aligned_cols=137 Identities=10% Similarity=-0.051 Sum_probs=86.0
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 399 MHMPFYALHYFRKSVFLQP-NDSRLWIAMAQCYET---EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 399 ~~~~~~A~~~~~~a~~~~p-~~~~~~~~la~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
.+..+++...+.+++.... .-....-.++.++.. -..-+|..-..+|.-...+.|+ +.+-.|.+....+..-.+.
T Consensus 269 r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 269 RALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHh
Confidence 3456778888888887653 333333444445443 0123566666666666666654 5566667777766666777
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 048034 475 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMR 542 (558)
Q Consensus 475 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~ 542 (558)
++...+.....- .-......+...|..+.+.|+.++|...|++++.+.+ +..+...+...+.
T Consensus 348 gLa~ve~L~~~~-----~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~-~~aer~~l~~r~~ 409 (415)
T COG4941 348 GLAMVEALLARP-----RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR-NAAERAFLRQRLD 409 (415)
T ss_pred HHHHHHHhhccc-----ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Confidence 777766655410 0122334555689999999999999999999999974 4444444544444
No 418
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.01 E-value=26 Score=31.23 Aligned_cols=70 Identities=7% Similarity=-0.052 Sum_probs=56.6
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHH
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSN 311 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (558)
...+++.+...+++...+.-++..|.+......+-..+.-.|+|++|...++-+-++.|........|.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 3456777888899999988888899888888888888899999999999999888888887655444443
No 419
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=70.88 E-value=59 Score=29.54 Aligned_cols=31 Identities=6% Similarity=-0.104 Sum_probs=23.1
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHhccCCC
Q 048034 499 ALIFLATHCR---------AHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 499 ~~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~ 529 (558)
.+-..|..+. ..++...|..+++++++++|.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 3444566663 446788999999999999864
No 420
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=70.62 E-value=92 Score=30.66 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=45.0
Q ss_pred cchHHHHHHHhhcc------CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCCchH
Q 048034 104 REYRRAAHVLRDQT------GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTMDPF 177 (558)
Q Consensus 104 ~~~~rA~~~l~~~~------~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 177 (558)
|=..+|=++|+... .-...|-..|+..|+.-..-...-.. -.....+..-+..++..++.-....|.+..
T Consensus 74 GiIHECDRLLR~~e~~~~~~~Lp~~FhaIYalALsELa~f~~~~~~----~~~~~~v~efFdaAlER~e~Gl~~~p~s~~ 149 (404)
T PF12753_consen 74 GIIHECDRLLRNSEEEEKKKELPDRFHAIYALALSELAIFKAEEEE----EKKREKVSEFFDAALERVELGLEKFPDSIL 149 (404)
T ss_dssp HHHHHHHHHHHHSS-GG---GS-HHHHHHHHHHHHHHHHTHHHHGG----GS-TT--HHHHHHHHHHHHHGGSSS--H-H
T ss_pred cchHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHhhcchhh----hhhhhhHHHHHHHHHHHHHhhhhcCCCchh
Confidence 44677778888764 24567888888777653222221111 011123455566777777777777888877
Q ss_pred HHHHHHHHHHh
Q 048034 178 ILYLYGLVLKD 188 (558)
Q Consensus 178 ~~~~~g~~~~~ 188 (558)
+.+.++.+++.
T Consensus 150 L~l~~skIll~ 160 (404)
T PF12753_consen 150 LLLAKSKILLQ 160 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766644
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.51 E-value=1.8e+02 Score=32.31 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=57.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh------cCCHHHHHHH--HHHHHhc-------CCC----
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPN-DSRLWIAMAQCYETEQ------LHMLEEAIKC--YRRAANC-------NDS---- 454 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~~------~~~~~~A~~~--~~~al~~-------~~~---- 454 (558)
-|......+-++.|++.++..+.. +...+..++..|...- .++-+++.+. .++.... +|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 345677888899999999877655 5556666666665410 1222344444 2222211 121
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 455 ---EAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 455 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
....+...+.++.++|+.++|+..|-..+.
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 134677888888899999999998877765
No 422
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.42 E-value=1.9e+02 Score=32.83 Aligned_cols=184 Identities=16% Similarity=0.046 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-------------ccc--hHHHHHhHHHHHHcCC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-------------SID--YRAWYGLGQAYEMMHM 401 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------------~~~--~~~~~~lg~~~~~~~~ 401 (558)
+...+.+|.+|...|+..+|+.+|.+|..-..... +...+..... +.. ...|...-+++.+.+.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 44557889999999999999999999976443322 2222111111 111 1233445667778888
Q ss_pred HHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHH
Q 048034 402 PFYALHYFRKSVFLQPNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA---IALNQLAKLHHALGRDEE 474 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~ 474 (558)
.+.+.+.-.+|++.-|++. .....+-.-+.. +|.+-+|.... -.+|+.. ..+..+..++.+.|+.+.
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhld--lgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLD--LGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhc--hhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 9999999999988655543 333444444555 78888886544 3355532 377778888888887653
Q ss_pred HHH-----HHHHHHH-HHHhhhhcCC-ChHHHHHHHHHHHHHcCCHHHHHH-HHHHHhccC
Q 048034 475 AAF-----YYKKDLE-RMEAEEREGP-NMVEALIFLATHCRAHNRFEDAEV-YCTRLLDYT 527 (558)
Q Consensus 475 A~~-----~~~~al~-~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~ 527 (558)
=.. .-++... +........+ .....|..|--.+...+++.+|-. .|+-+..+.
T Consensus 1073 L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1073 LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 221 0111111 1111111222 223444455566778888887765 566666653
No 423
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.96 E-value=57 Score=29.19 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=29.7
Q ss_pred CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH
Q 048034 317 ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
+...++..+++.-++..|.+......+-..+...|++++|...++-+-.+.|++.
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3334444444444444444444555555566666666666666666666666543
No 424
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.67 E-value=55 Score=34.79 Aligned_cols=177 Identities=14% Similarity=0.017 Sum_probs=0.0
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH---HccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC-----H
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA---LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM-----P 402 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---l~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~-----~ 402 (558)
...|.+..+-.....+|+.+|+|++|+.+--++ +..+++.....+..++ ....+...+.-...... -
T Consensus 53 ~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak-----~id~yi~~~~~~~~~~~~~~~iD 127 (929)
T KOG2062|consen 53 ETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAK-----CIDMYIETASETYKNPEQKSPID 127 (929)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHH-----HHHHHHHHHHHHhcCccccCCCC
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 048034 403 FYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR-DEEAAFYYKK 481 (558)
Q Consensus 403 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~ 481 (558)
+.-....++.++.+-.+...|..+|..+.. ..+..+++|+-...+.......+-.+.....+ -+--.+.+..
T Consensus 128 ~rL~~iv~rmi~kcl~d~e~~~aiGia~E~-------~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~ 200 (929)
T KOG2062|consen 128 QRLRDIVERMIQKCLDDNEYKQAIGIAFET-------RRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRL 200 (929)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHHhhh-------hhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 482 DLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 482 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.++. ..+.-..-++.+.+|+..+.+.+.+...+++..+
T Consensus 201 lv~~------y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 201 LVKT------YLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHH------HccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHh
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.64 E-value=99 Score=28.57 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=36.9
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPN------DSRLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
....+|..|+..|++++|+.+|+.+...... ...+...+..|+.. .|+.++.+.+.-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~--~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR--LGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHH
Confidence 4456777788888888888888777544322 12344556666666 77766666555443
No 426
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.45 E-value=8.8 Score=21.47 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKL 366 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 366 (558)
+|..+-..|...|++++|...|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4677888999999999999999887653
No 427
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=68.08 E-value=9.1 Score=21.40 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHH
Q 048034 435 LHMLEEAIKCYRR 447 (558)
Q Consensus 435 ~~~~~~A~~~~~~ 447 (558)
.|++++|.+.|++
T Consensus 13 ~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 13 MGQFEEALEVFDE 25 (31)
T ss_pred cchHHHHHHHHHH
Confidence 4444444444443
No 428
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.55 E-value=1.5e+02 Score=30.30 Aligned_cols=143 Identities=16% Similarity=0.108 Sum_probs=79.6
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CC--cH---HHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DS--EA---IALNQ 461 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~--~~---~~~~~ 461 (558)
+++.++++|... ..++-...+++.++.+-++...-..++..|.+ ++.+.+..+|.+++... |. +. ..|..
T Consensus 101 al~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk---ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeK 176 (711)
T COG1747 101 ALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK---IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEK 176 (711)
T ss_pred HHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH---hchhhHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 566777777766 44555666777777777776666667766654 66677777777776432 21 11 12322
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHHHhhhhcCCChHHHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 048034 462 LAKLHHALG-RDEEAAFYYKKDLERMEAEEREGPNMVEALI-FLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLR 539 (558)
Q Consensus 462 la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~ 539 (558)
+-. -.| +.+.-.....+.-.. .+.....+.+ .+-..|....++.+|++.+...++.+..+....+.++.
T Consensus 177 L~~---~i~dD~D~fl~l~~kiqt~------lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 177 LPE---LIGDDKDFFLRLQKKIQTK------LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHH---hccccHHHHHHHHHHHHHh------hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 221 112 222222222222221 1222222222 23355666778888888888888887666666666666
Q ss_pred HHHH
Q 048034 540 GMRM 543 (558)
Q Consensus 540 ~~~~ 543 (558)
.++.
T Consensus 248 ~lRd 251 (711)
T COG1747 248 NLRD 251 (711)
T ss_pred HHHH
Confidence 6554
No 429
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.02 E-value=9.7 Score=36.38 Aligned_cols=111 Identities=17% Similarity=-0.008 Sum_probs=82.4
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCC-----------C--------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFLQP-----------N--------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 452 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~~p-----------~--------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~ 452 (558)
.|...++.++++.|..-|.++..... + -.....+++.+-.+ .+.+..|+..-..++..+
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk--~~~~~~a~~~~~~~~~~~ 305 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLK--VKGRGGARFRTNEALRDE 305 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccc--ccCCCcceeccccccccC
Confidence 45556677777777777776654211 1 11245567888888 899999988888888888
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 453 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 453 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
+....+++..+..+....++++|++.++.+.. ..|.+..+...+...-....
T Consensus 306 ~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~-------~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 306 RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ-------KAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc-------cCcchHHHHHHHHHhhhHHH
Confidence 88888999999999999999999999999987 66777766655555444333
No 430
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=66.71 E-value=48 Score=27.03 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.|+-++--+.+....+....+|..+..+|..|.+.|+..+|-+.+.++.+
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45555555555555544455566666666666666666666666666655
No 431
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=65.86 E-value=53 Score=26.30 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANCNDS---------------EAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
..+|....+ .+++-.++-+|++|+.+..+ ......++|..+..+|+.+-.++|++-+-+..
T Consensus 5 tllAd~a~~--~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~V 80 (140)
T PF10952_consen 5 TLLADQAFK--EADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKV 80 (140)
T ss_pred HHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 344444445 55555555555555443111 12356789999999999999999998877644
No 432
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.68 E-value=78 Score=32.92 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=37.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~ 451 (558)
+..+.|+++.|.....++ ++..-|-.||..... .+++..|.+||.++...
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~--~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS--AGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh--cccchhHHHHHHhhcch
Confidence 345778888877665543 456778889999888 89999999999887543
No 433
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.50 E-value=49 Score=23.92 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVN 204 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (558)
+..+...|.-+-+.|++.+|+.+|++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44556667777777777777777777654
No 434
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.21 E-value=1.2e+02 Score=28.34 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=92.5
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCC-------C---HHH---HHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCc-
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPN-------D---SRL---WIAMA-QCYETEQLHMLEEAIKCYRRAANCNDSE- 455 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~-------~---~~~---~~~la-~~~~~~~~~~~~~A~~~~~~al~~~~~~- 455 (558)
.-+..+....+|..|+..++++++.-.. . .+. +..+| .++.. ++++.+++...-+-.+.-.+-
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAE--mnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAE--MNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHH--HhhHHHHHHHHHHHhcCcccCC
Confidence 3456667778999999999998864311 1 122 22222 45566 999999999888877754444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN-MVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
+.++-.-..+|.+.|++....+.-..-+..- .. ..-|+ ...+-.++-.++.=.|.+++|.+.......+.......+
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p-~N-q~lp~y~~vaELyLl~VLlPLG~~~eAeelv~gs~af~EeQr~~a 195 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDP-SN-QSLPEYGTVAELYLLHVLLPLGHFSEAEELVVGSAAFTEEQRQEA 195 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc-cc-CCchhhHHHHHHHHHHHHhccccHHHHHHHHhcCCCCCHHHHHHH
Confidence 3466666778889999998888777777621 00 00111 112223344455557999999999965555543344444
Q ss_pred HHHHHHHHHh
Q 048034 535 KSMLRGMRMA 544 (558)
Q Consensus 535 ~~ll~~~~~~ 544 (558)
-.++..-++.
T Consensus 196 L~~v~~~~qq 205 (309)
T PF07163_consen 196 LQAVEEARQQ 205 (309)
T ss_pred HHHHHHHHHh
Confidence 4455444443
No 435
>PRK12798 chemotaxis protein; Reviewed
Probab=64.67 E-value=1.6e+02 Score=29.41 Aligned_cols=203 Identities=15% Similarity=-0.003 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhh-hCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVN-SYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
+...-...|...+-.|+-.+|.+.+..+-. .-|.....+..|+ .-......+..+
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv------------------------~a~l~~~~dP~~ 166 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALV------------------------QGNLMVATDPAT 166 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHH------------------------HHHHhcccCHHH
Confidence 444566678888889999999988876542 2233333343331 223445568899
Q ss_pred HHHHHHHHHhhcCCChH---HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcch---HHHHHHHHHhcCCHhHHHHHHH
Q 048034 254 ALTKYEYLQGTFGFSNY---LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVED---MDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
|+..|+.+--..|.... ++..-..+....|+.++...+-.+-+....+.+.+ ...++..+....+......+..
T Consensus 167 Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~ 246 (421)
T PRK12798 167 ALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVE 246 (421)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHH
Confidence 99999999888887532 33344455678899999888888887766655443 3444455555554444444444
Q ss_pred HHhhcCCC-ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHH
Q 048034 328 RVFTTDKY-RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 328 ~~~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
-....+|. ....|..++..-...|+.+-|...-.+++.+...... ...++.+.-|..-.-..+++.|+
T Consensus 247 ~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~-----------~~~ra~LY~aaa~v~s~~~~~al 315 (421)
T PRK12798 247 ILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSA-----------DAARARLYRGAALVASDDAESAL 315 (421)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCc-----------chHHHHHHHHHHccCcccHHHHH
Confidence 44444554 4678889999999999999999999999988643221 23344444455555566777777
Q ss_pred HHHHHH
Q 048034 407 HYFRKS 412 (558)
Q Consensus 407 ~~~~~a 412 (558)
..+.+.
T Consensus 316 ~~L~~I 321 (421)
T PRK12798 316 EELSQI 321 (421)
T ss_pred HHHhcC
Confidence 766654
No 436
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=64.57 E-value=17 Score=38.86 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=16.9
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhc
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQ 116 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~ 116 (558)
+.+++-++++-+|+|++|+.+|-..
T Consensus 260 ~p~~Yf~~LlLtgqFE~AI~~L~~~ 284 (613)
T PF04097_consen 260 NPLLYFQVLLLTGQFEAAIEFLYRN 284 (613)
T ss_dssp ----HHHHHHHTT-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 3455667888889999999999984
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=64.17 E-value=9.5 Score=36.42 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=87.1
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHccCc---CCHHHHHHhc--hhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 342 IIGNYYSLKGQHEKSVVYFRRALKLNK---NYLSAWTLMG--HEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 342 ~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~--~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
..|+-.+..++++.|..-+.+++..-. .... +...- ..+...-.....+++.+-...+.+..|+..-..+++.+
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~-~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~ 305 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDRE-KEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDE 305 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccc-cccccccccccccccccccchHHhcccccCCCcceeccccccccC
Confidence 356667778888888877777765321 1000 00000 00001122344557778888899999998888888888
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
+....+++..+..+.. ..++++|+..++.+....|.+..+...+..+-...
T Consensus 306 ~s~tka~~Rr~~~~~~--~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 306 RSKTKAHYRRGQAYKL--LKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred hhhCcHHHHHHhHHHh--hhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 8899999999999999 99999999999999999999887666655544443
No 438
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.20 E-value=1.3e+02 Score=29.94 Aligned_cols=106 Identities=17% Similarity=0.056 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch---HHH
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH---NEA 254 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~A 254 (558)
.++-.|.++.....|++|+.++-.|-+.+..+..-...+.. + ..+..+-...||+.+.+. ..|
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VD---------N-----yallnLDIVWCYfrLknitcL~DA 230 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVD---------N-----YALLNLDIVWCYFRLKNITCLPDA 230 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhc---------c-----hhhhhcchhheehhhcccccCChH
Confidence 56777888888999999999888876654433333322211 1 011111123344444332 122
Q ss_pred H-------HH--------HHHHHhh-cCCChH------HHHHHHHHHHHcccHHHHHHHHHHHHH
Q 048034 255 L-------TK--------YEYLQGT-FGFSNY------LQAQIAKAQYSLREFEQVEVVFEELLR 297 (558)
Q Consensus 255 ~-------~~--------~~~~~~~-~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~l~ 297 (558)
. +. +.++..+ .+.+++ +....|.+.++.|+-++|.+.++.+..
T Consensus 231 e~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 231 EVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2 11 2222221 223332 344569999999999999999998865
No 439
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=62.93 E-value=78 Score=25.38 Aligned_cols=66 Identities=15% Similarity=0.039 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP--------NMVEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
+..+|....+.+++-.++-.|++++...++...... -......+||..+..+|+.+-.++|++-|-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 457888899999999999999999987665531111 113345679999999999999999997654
No 440
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.92 E-value=84 Score=25.74 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=75.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 472 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 472 (558)
-..+...+.+...+.+++..+..++.++..+..+..+|.+ . +..+.+..++.- . +..-.-..+.++.+.+-+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~--~-~~~~ll~~l~~~----~-~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK--Y-DPQKEIERLDNK----S-NHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH--H-CHHHHHHHHHhc----c-ccCCHHHHHHHHHHcCcH
Confidence 3445567889999999999999888888899999999987 4 455666666631 1 111123455566677777
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 048034 473 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLR 539 (558)
Q Consensus 473 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~ 539 (558)
++++..+.+.-. ...+... +....++++.|++++.+. .+++.|..++.
T Consensus 86 ~~~~~l~~k~~~-----------~~~Al~~---~l~~~~d~~~a~~~~~~~-----~~~~lw~~~~~ 133 (140)
T smart00299 86 EEAVELYKKDGN-----------FKDAIVT---LIEHLGNYEKAIEYFVKQ-----NNPELWAEVLK 133 (140)
T ss_pred HHHHHHHHhhcC-----------HHHHHHH---HHHcccCHHHHHHHHHhC-----CCHHHHHHHHH
Confidence 777777765321 1112111 112237888888888762 34555555544
No 441
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=61.82 E-value=17 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHcc
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKL 366 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 366 (558)
+|..+-..|.+.|++++|...|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4667888899999999999999987654
No 442
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.74 E-value=22 Score=29.51 Aligned_cols=42 Identities=14% Similarity=-0.196 Sum_probs=21.4
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR 283 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~ 283 (558)
+...+..|++.-|..+.+.++..+|++..+...++.++..+|
T Consensus 77 A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 77 AQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555554444
No 443
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=61.27 E-value=20 Score=20.45 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 425 AMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 425 ~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
.+-..|.+ .|++++|.+.|.+.
T Consensus 5 ~li~~~~~--~~~~~~a~~~~~~M 26 (35)
T TIGR00756 5 TLIDGLCK--AGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHH--CCCHHHHHHHHHHH
Confidence 33344444 44444444444443
No 444
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.13 E-value=54 Score=29.74 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHh---------hcCChHHHHHHHHHHHccCcCCH
Q 048034 337 PESCCIIGNYYS---------LKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 337 ~~~~~~lg~~~~---------~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
+..+-..|..+. ..++...|+.++++|+.++|+..
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 445666777773 45678899999999999999854
No 445
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=59.24 E-value=2e+02 Score=28.98 Aligned_cols=114 Identities=18% Similarity=0.094 Sum_probs=61.2
Q ss_pred chhHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCC-C---CCchhchhHHHHHHHH
Q 048034 90 DSDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPL-G---KSDAVNRELISLEREL 165 (558)
Q Consensus 90 ~~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~-~---~~~~~~~~l~~~~~~l 165 (558)
|-..=.||...|-.|+|+-|...++-+..+-..- + .-.|++|-.....-+.-+.+.. . .......-++.+....
T Consensus 208 E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-k-aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y 285 (414)
T PF12739_consen 208 EAQMRRLADLAFMLRDYELAYSTYRLLKKDFKND-K-AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTY 285 (414)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-h-hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHH
Confidence 4455589999999999999999998774311100 0 0134444322222121111111 0 1112233344433333
Q ss_pred HHh----hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 048034 166 STL----RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNS 205 (558)
Q Consensus 166 ~~~----~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 205 (558)
.+. ............+.+.++...|.+.+|...+.+....
T Consensus 286 ~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 286 LKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 331 1111233446777888888899988888877777654
No 446
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.57 E-value=25 Score=25.44 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=15.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHh
Q 048034 468 ALGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 468 ~~g~~~~A~~~~~~al~~~~~ 488 (558)
..|++++|+.+|..+++.+-.
T Consensus 18 ~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 467788888888888876543
No 447
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=58.56 E-value=1.8e+02 Score=28.12 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=71.1
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
+...|+...|...-.+ ..+ .+.+.|...-.++.. .++|++=..... . ...|..+.-...++.+.|+..+|
T Consensus 187 li~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~--~~~w~eL~~fa~-s----kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAE--NKDWDELEKFAK-S----KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHh--cCCHHHHHHHHh-C----CCCCCChHHHHHHHHHCCCHHHH
Confidence 3567777777665333 333 467888899999999 999987665433 1 33456677778888899999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTR 522 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 522 (558)
..+..+ +. + ......|.+.|++.+|.+...+
T Consensus 257 ~~yI~k-~~---------~------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPK-IP---------D------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHh-CC---------h------HHHHHHHHHCCCHHHHHHHHHH
Confidence 988877 21 1 2355677889999999876543
No 448
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.45 E-value=52 Score=32.54 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred hCCCCchHHHHHHHHHHH------hcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHH
Q 048034 170 KNGTMDPFILYLYGLVLK------DKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLAS 243 (558)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (558)
...|.|.+++...-..+. ..+..-+|+.+++.++...|.|......| ..
T Consensus 171 e~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlL-------------------------vr 225 (365)
T PF09797_consen 171 ESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLL-------------------------VR 225 (365)
T ss_pred ccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHH-------------------------HH
Q ss_pred HHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHH-HHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHH
Q 048034 244 TYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVE-VVFEELLRNDPYRVEDMDMYSNVLYAKECFSAL 322 (558)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a 322 (558)
+|..+|-...|...|..+--..-....+-..+..-....|.+..+. ..+..++.....+..........-+..|.+.+.
T Consensus 226 lY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af~~gsysKi 305 (365)
T PF09797_consen 226 LYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAFENGSYSKI 305 (365)
T ss_pred HHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhH
Q ss_pred HHHHH
Q 048034 323 SYLAH 327 (558)
Q Consensus 323 ~~l~~ 327 (558)
....+
T Consensus 306 ~ef~~ 310 (365)
T PF09797_consen 306 EEFIE 310 (365)
T ss_pred HHHHH
No 449
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.14 E-value=1.8e+02 Score=27.93 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
-.+++..+|.+|.+.|+.+.|.+.+++.....-.-+.- -+-.-....+|..|....-..+.++..+..++.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~k---------iDVvf~~iRlglfy~D~~lV~~~iekak~liE~ 173 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHK---------IDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE 173 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccc---------hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998876643221100 000112334566665444333333333333333
Q ss_pred CCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048034 416 QPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 452 (558)
Q Consensus 416 ~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~ 452 (558)
..+- -+.-...|.-... ..++.+|-..|-.++...
T Consensus 174 GgDWeRrNRlKvY~Gly~ms--vR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 174 GGDWERRNRLKVYQGLYCMS--VRNFKEAADLFLDSVSTF 211 (393)
T ss_pred CCChhhhhhHHHHHHHHHHH--HHhHHHHHHHHHHHcccc
Confidence 2221 1233344555666 788889988888877654
No 450
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.26 E-value=5.6e+02 Score=33.45 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHhhh---hcCCCh
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA-IALNQL---AKLHHALGRDEEAAFYYKKDLERMEAEE---REGPNM 496 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~ 496 (558)
+..|.+..+ .|-++.++..+.+...+..-.. ++...+ +.+|.... ..+..+++.+++.. -.+...
T Consensus 2740 n~fakvArk--h~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sTNl~yF~~~q~ 2811 (3550)
T KOG0889|consen 2740 NRFAKVARK--HGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIESTNLMYFSDRQK 2811 (3550)
T ss_pred HHHHHHHHh--cCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhcccHHHHhhHHH
Confidence 444555555 6777777777666665432221 233222 23333322 22233333222211 112233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 497 VEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 497 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
...+...|....+.|+.++|-..|..|++++-.-...|
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW 2849 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAW 2849 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHH
Confidence 45566679999999999999999999999864444444
No 451
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=57.18 E-value=2.1e+02 Score=28.39 Aligned_cols=54 Identities=13% Similarity=-0.092 Sum_probs=40.1
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCC-----hHH--HHHHHHHHHHcccHHHHHHHHHH
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFS-----NYL--QAQIAKAQYSLREFEQVEVVFEE 294 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~--~~~~a~~~~~~~~~~~A~~~~~~ 294 (558)
.+..+++.++|..|...|+.+....+.. ... ....|..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4667889999999999999999864321 112 23345556678899999999986
No 452
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=55.81 E-value=1.1e+02 Score=24.95 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=35.6
Q ss_pred HHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHH
Q 048034 244 TYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFE 293 (558)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 293 (558)
.+...+.....+..++.++..++.++.+...+..+|... +..+.+..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344557788999999999988777788888888888754 3445555555
No 453
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.59 E-value=1.5e+02 Score=29.74 Aligned_cols=93 Identities=24% Similarity=0.234 Sum_probs=50.2
Q ss_pred HHHHHhhcccchHHHHHHHhhccC------ChHHHHHHHHHH---HHHchhhHHHHHHhhCCCCC----------Cchhc
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTG------KKSVFLRCYALY---LAGEKRKEEEMIELEGPLGK----------SDAVN 155 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~------~~~~~l~~y~~y---l~~~~~~~e~~~~~~~~~~~----------~~~~~ 155 (558)
-++--|...|.|+-|..+|.+..+ -+..|+..|..- +.+.... ..+...+.+ .+..-
T Consensus 123 ~laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~----p~l~~~~~r~~~~~~~~~~lP~i~ 198 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSL----PPLPSYIRRNWDESNPKNGLPAIP 198 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTT----S-EEEEEBCTTTTSSSCCG-BB--
T ss_pred CcHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCC----CCccccccCCccccccccCCCcCc
Confidence 458889999999999999998743 567787765311 1110000 000000000 01111
Q ss_pred hhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhC
Q 048034 156 RELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSY 206 (558)
Q Consensus 156 ~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 206 (558)
..+..+... ...|.-+...|++.+|+..|+.+|..-
T Consensus 199 ~~l~~L~~~---------------Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 199 LSLSSLEER---------------LKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp --HHHHHHH---------------HHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH---------------HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 223333332 234677789999999999999998743
No 454
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.34 E-value=36 Score=28.21 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 268 SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
........|...+..|++.-|..+.+.++..+|++..+....+.++..++
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34556677888888999999999999999999999888777777665543
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.26 E-value=1.9e+02 Score=27.27 Aligned_cols=106 Identities=9% Similarity=-0.004 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCC-chHHHHHHHHHHHHHHhchHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLN-NHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~ 253 (558)
-..++-.+|..|.+.++.+.+.++..+.++..-.. +.. +-+....-+|.+|....-..+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--------------------g~KiDv~l~kiRlg~~y~d~~vV~e 173 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--------------------GLKIDVFLCKIRLGLIYGDRKVVEE 173 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--------------------ccchhhHHHHHHHHHhhccHHHHHH
Confidence 36689999999999999999999999887632210 111 111222235667766666677
Q ss_pred HHHHHHHHHhhcCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC
Q 048034 254 ALTKYEYLQGTFGFS---NYLQAQIAKAQYSLREFEQVEVVFEELLRNDP 300 (558)
Q Consensus 254 A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 300 (558)
.++..+.+++...+- .......|.......+|.+|-.++..++....
T Consensus 174 ~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 174 SLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 777777776643321 22445567777888889999888888876443
No 456
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=1.5e+02 Score=27.82 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AI---ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 493 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 493 (558)
..+|.++|..|.+ .++.+.+.+.+.+.+...-.. .+ ....+|.+|..+.-.++.++..+..++. .+ .-
T Consensus 115 ~ea~~n~aeyY~q--i~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk---Gg-DW 188 (412)
T COG5187 115 SEADRNIAEYYCQ--IMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK---GG-DW 188 (412)
T ss_pred HHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh---CC-CH
Confidence 5789999999999 999999998888776543211 12 3445666665555455555555555541 11 11
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 494 PNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 494 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
..........|.......++.+|...+..++..
T Consensus 189 eRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 189 ERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 112233344566777778899999888888754
No 457
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.33 E-value=21 Score=25.77 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=14.2
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 048034 398 MMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~ 415 (558)
..|++++|+.+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 457888888888888764
No 458
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=52.83 E-value=1.6e+02 Score=29.59 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=26.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcH--HHHHHHHHHHH
Q 048034 505 THCRAHNRFEDAEVYCTRLLDYTGPEK--ETAKSMLRGMR 542 (558)
Q Consensus 505 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~ll~~~~ 542 (558)
...++.++|..|....++.+++.|+.. +.++.++..+.
T Consensus 308 ~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e 347 (422)
T PF06957_consen 308 SQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACE 347 (422)
T ss_dssp HHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 345788999999999999999987654 23455555544
No 459
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=51.19 E-value=93 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 461 QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 461 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
..|.-.-..|++++|+.+|.++++.+-......|+
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d 45 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKD 45 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33444556788888888888888866554433443
No 460
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=50.65 E-value=2.4e+02 Score=27.22 Aligned_cols=184 Identities=13% Similarity=-0.017 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHhcCCHhHHHHHHHH
Q 048034 250 MHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR-VEDMDMYSNVLYAKECFSALSYLAHR 328 (558)
Q Consensus 250 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~l~~~~~~~~a~~l~~~ 328 (558)
-.++|+.+-.-+..+.|..++++-..+...++..+... ..+++- +-.+..--..+|..+-..+...++.+
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchhhhhHHHHHHHHHHHHH
Confidence 35788888888888999999988877776665432110 111110 00000001122333334444555555
Q ss_pred HhhcCC-CChhHHHHHHHHHh-----hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCH
Q 048034 329 VFTTDK-YRPESCCIIGNYYS-----LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402 (558)
Q Consensus 329 ~~~~~~-~~~~~~~~lg~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 402 (558)
++.... ..-...-.++-++. ..-++..-..+|.-...+.|+- .+-.+.+....+..-+
T Consensus 282 A~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP----------------vV~LNRAVAla~~~Gp 345 (415)
T COG4941 282 ALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP----------------VVTLNRAVALAMREGP 345 (415)
T ss_pred HHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC----------------eEeehHHHHHHHhhhH
Confidence 443332 11111122222222 1223444444454444444441 1223334444444445
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 048034 403 FYALHYFRKSVFL--QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALN 460 (558)
Q Consensus 403 ~~A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 460 (558)
..++...+....- -......+...|..+.+ +|+.++|...|++++.+.++.....+
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r--Lgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLAR--LGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHH--hCChHHHHHHHHHHHHhcCChHHHHH
Confidence 5555555544432 12233456667777777 88888888888888877766655433
No 461
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.34 E-value=2.2e+02 Score=26.68 Aligned_cols=132 Identities=15% Similarity=0.161 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-
Q 048034 354 EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM--HMPFYALHYFRKSVFLQPNDSRLWIAMAQCY- 430 (558)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~- 430 (558)
+.-+.++..+++-+|+ ++.+|...-.++... ..+..-+...++.++.++.|-..|...-.+.
T Consensus 91 dneld~~~~~lk~~PK---------------~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~ 155 (328)
T COG5536 91 DNELDFLDEALKDNPK---------------NYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLR 155 (328)
T ss_pred hcHHHHHHHHHhcCCc---------------hhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeee
Confidence 4455667777777777 445565555555443 5577778888999999999888776554444
Q ss_pred --HHHhcCCHH---HHHHHHHHHHhcCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHH
Q 048034 431 --ETEQLHMLE---EAIKCYRRAANCNDSEAIALNQL---AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF 502 (558)
Q Consensus 431 --~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 502 (558)
.. .+++. .-.++-..++..++.+..+|... -......|++-.-. ++++-++..-+....+|++..++..
T Consensus 156 ~ie~--~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk-~l~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 156 TIED--LFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQK-YLEKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred cchh--hccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHH-HHHHHHHHHHhhhhcCccccchhhH
Confidence 12 33333 33444556677788888888876 33334455543322 4555555544444467777777665
Q ss_pred H
Q 048034 503 L 503 (558)
Q Consensus 503 l 503 (558)
+
T Consensus 233 ~ 233 (328)
T COG5536 233 L 233 (328)
T ss_pred H
Confidence 4
No 462
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=50.30 E-value=44 Score=18.97 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
..+..++.+ .|+++.|...|+..
T Consensus 5 ~~ll~a~~~--~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAK--AGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHH
Confidence 333344444 44444444444433
No 463
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.98 E-value=2.2e+02 Score=26.64 Aligned_cols=166 Identities=12% Similarity=0.056 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHH
Q 048034 193 NLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQ 272 (558)
Q Consensus 193 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 272 (558)
..|++.=...+..+|.....|.---+++.... ...-.+..-.+.-+..+..++..+|.+-.+|
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~-----------------~~sedk~~~ldneld~~~~~lk~~PK~YqiW 111 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQ-----------------MVSEDKEHLLDNELDFLDEALKDNPKNYQIW 111 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhh-----------------hhcccchhhhhcHHHHHHHHHhcCCchhhhh
Confidence 46777777777777776666643311111100 0000011223455677888899999998888
Q ss_pred HHHHHHHHHc--ccHHHHHHHHHHHHHcCCCCcchHHHHHHHH------HhcCCHhHHHHHHHHHhhcCCCChhHHHHH-
Q 048034 273 AQIAKAQYSL--REFEQVEVVFEELLRNDPYRVEDMDMYSNVL------YAKECFSALSYLAHRVFTTDKYRPESCCII- 343 (558)
Q Consensus 273 ~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l------~~~~~~~~a~~l~~~~~~~~~~~~~~~~~l- 343 (558)
...-.++-.. ..+..-..+.+++++.|+.|...+...-.++ ........-......++..++.+..+|...
T Consensus 112 ~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~ 191 (328)
T COG5536 112 HHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRY 191 (328)
T ss_pred HHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHH
Confidence 7776666554 6688888889999999999877665433333 333444555677777889999999988766
Q ss_pred --HHHHhhcCC------hHHHHHHHHHHHccCcCCHHHHH
Q 048034 344 --GNYYSLKGQ------HEKSVVYFRRALKLNKNYLSAWT 375 (558)
Q Consensus 344 --g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~ 375 (558)
-......|+ +++-+.+...++-.+|++.++|.
T Consensus 192 ~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~ 231 (328)
T COG5536 192 IWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWG 231 (328)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhh
Confidence 333333444 45556667777778888777654
No 464
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=49.66 E-value=1.2e+02 Score=23.64 Aligned_cols=79 Identities=15% Similarity=-0.047 Sum_probs=43.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFE 514 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 514 (558)
....++|..+++-.-........+..-....+...|+|++|+ ... .....+..--+++.+-.+.|--+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~~---------~~~~~pdL~p~~AL~a~klGL~~ 86 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LLP---------QCHCYPDLEPWAALCAWKLGLAS 86 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HHH---------TTS--GGGHHHHHHHHHHCT-HH
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---Hhc---------ccCCCccHHHHHHHHHHhhccHH
Confidence 455666665555443333333334455566677788888882 111 22333445556677777888888
Q ss_pred HHHHHHHHHhc
Q 048034 515 DAEVYCTRLLD 525 (558)
Q Consensus 515 ~A~~~~~~al~ 525 (558)
++...+.+.-.
T Consensus 87 ~~e~~l~rla~ 97 (116)
T PF09477_consen 87 ALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHHh
Confidence 88888775543
No 465
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.59 E-value=2.8e+02 Score=27.60 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhhhhcCC
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQLAKLHHALGRDEEAAFYYKKDLERM---EAEEREGP 494 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~ 494 (558)
.++..+|.-|.. .|+++.|+++|-++-...... ...+.++..+-..+|+|..-..+-.++.... .+....-|
T Consensus 151 ra~~Dl~dhy~~--cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLD--CGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHH--hccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 467778888988 999999999998876654332 3467777778888888887777777766531 11111112
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 495 NMVEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
. .+...-|.+.+..++|..|..+|-.+-
T Consensus 229 ~--kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 A--KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 233334555566668999988887664
No 466
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.58 E-value=1.4e+02 Score=32.11 Aligned_cols=184 Identities=15% Similarity=0.088 Sum_probs=108.4
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH---HcCCHHHHHHHHHHH
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE---MMHMPFYALHYFRKS 412 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~---~~~~~~~A~~~~~~a 412 (558)
.+++-.++-..|....+|+.-++..+..-++ |+....- ....+.+..+-++. +-|+-++|+...-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vv---------e~~nv~f~YaFALNRRNr~GDRakAL~~~l~l 269 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVV---------ETHNVRFHYAFALNRRNRPGDRAKALNTVLPL 269 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhh---------ccCceEEEeeehhcccCCCccHHHHHHHHHHH
Confidence 4677777778888888998888777664443 4321110 00111112222222 346778888888777
Q ss_pred HhcC-CCCHHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 048034 413 VFLQ-PNDSRLWIAMAQCYET-------EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR-DEEAAFYYKKDL 483 (558)
Q Consensus 413 ~~~~-p~~~~~~~~la~~~~~-------~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al 483 (558)
++.. |-.+.+++..|.+|.. ...+..+.|+++|++|++..|... .-.+++.++...|+ ++...+.-.-.+
T Consensus 270 ve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~Igm 348 (1226)
T KOG4279|consen 270 VEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGM 348 (1226)
T ss_pred HHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHH
Confidence 7654 4567788888888764 014567889999999999998643 33466666666665 333333322222
Q ss_pred HHHHhhhhcC--CChHHHHHHHHHHH---HHcCCHHHHHHHHHHHhccCCCcH
Q 048034 484 ERMEAEEREG--PNMVEALIFLATHC---RAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 484 ~~~~~~~~~~--~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
.+ ....+.. -.....|...|..+ ...+++.+|+...++..+++||..
T Consensus 349 kL-n~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 349 KL-NSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HH-HHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 21 1111111 11122233334333 335899999999999999987753
No 467
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=49.08 E-value=41 Score=19.50 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhh----cCChHHHHHHHHHHHcc
Q 048034 338 ESCCIIGNYYSL----KGQHEKSVVYFRRALKL 366 (558)
Q Consensus 338 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~ 366 (558)
.+++.+|.+|.. ..+..+|+.+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 456778887764 24889999999988654
No 468
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.98 E-value=91 Score=21.87 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
+...|.-.-..|++++|+.+|.++++.+....
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~ 39 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQAL 39 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 33445555668888888888888888665444
No 469
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=48.56 E-value=4.1e+02 Score=29.25 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=20.5
Q ss_pred HHHHHHHhhcccchHHHHHHHhhccCC
Q 048034 93 FYLLAKSYFDCREYRRAAHVLRDQTGK 119 (558)
Q Consensus 93 ~~~la~~~~~~~~~~rA~~~l~~~~~~ 119 (558)
.+++=.+++-+|+|++|+.+|-.+...
T Consensus 471 p~~Yf~~LlLsgqfe~AI~fL~~~~~~ 497 (835)
T KOG2168|consen 471 PLLYFQVLLLSGQFERAIEFLHREEPN 497 (835)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHhhcCC
Confidence 334455667778999999999988665
No 470
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.42 E-value=1e+02 Score=30.62 Aligned_cols=25 Identities=4% Similarity=-0.060 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 501 IFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 501 ~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
..-|.+.+.+|+-++|.++++.+..
T Consensus 271 LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 271 LLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3358899999999999999998753
No 471
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=48.01 E-value=4.8e+02 Score=29.96 Aligned_cols=258 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 048034 249 RMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR--EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLA 326 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~ 326 (558)
...+.-.+....++...+.+ .....+-..|...+ ..+.|+....+... .+....+-..+-.+++
T Consensus 771 ~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~-~~~~~~ad~al~hll~------------ 836 (1265)
T KOG1920|consen 771 NKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL-AQVAVSADEALKHLLF------------ 836 (1265)
T ss_pred hHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh-cccchhHHHHHHHHHh------------
Q ss_pred HHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHH
Q 048034 327 HRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
..--..+-+.....-+++-|....++.-+-...+.+....+- .....+..-.+-..+++|+.|+
T Consensus 837 ----------Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~------~m~~~~rkF~ID~~L~ry~~AL 900 (1265)
T KOG1920|consen 837 ----------LVDVNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELK------KMETLLRKFKIDDYLKRYEDAL 900 (1265)
T ss_pred ----------hccHHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHh------hchhhhhheeHHHHHHHHHHHH
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH----------HHHHHHcCCHHHHH
Q 048034 407 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL----------AKLHHALGRDEEAA 476 (558)
Q Consensus 407 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------a~~~~~~g~~~~A~ 476 (558)
..+.++- ...+-..-..-.+ .|-|.+|+.+|.--.+....-..+|... |..|...|+.++|+
T Consensus 901 ~hLs~~~------~~~~~e~~n~I~k--h~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl 972 (1265)
T KOG1920|consen 901 SHLSECG------ETYFPECKNYIKK--HGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKAL 972 (1265)
T ss_pred HHHHHcC------ccccHHHHHHHHh--cccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHH
Q ss_pred HHHHHHHH---HHHhhhhcCCChHHHH---HHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhccCC
Q 048034 477 FYYKKDLE---RMEAEEREGPNMVEAL---IFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMAQSSF 548 (558)
Q Consensus 477 ~~~~~al~---~~~~~~~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~~~a~ 548 (558)
..|+.+.. .+.-.....+...... ..|+.-+..++++-+|.+.....+. +++.+-.++-.-..+.+|+
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----DPEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CHHHHHHHHhhHhHHHHHH
No 472
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=47.58 E-value=2.3e+02 Score=26.11 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHh-hhhcCCChHHHHHHHH-HHHHHcCCHHHHHHHHHHHhc
Q 048034 472 DEEAAFYYKKDLERMEA-EEREGPNMVEALIFLA-THCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~ 525 (558)
.+.|...|+.+.+.... ....+|-.....++.+ ..|.-+++.++|.+..++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999886543 1122232222333333 345567999999988877764
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.42 E-value=2e+02 Score=25.10 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhcCCCh--------HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchH
Q 048034 252 NEALTKYEYLQGTFGFSN--------YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDM 306 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 306 (558)
+.|+..++.+.+..+... .+..+...++...|.|++|.+.+++... +|+.....
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r 147 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLR 147 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHH
Confidence 556667766666544321 1334456788999999999999999998 77664443
No 474
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.39 E-value=1.3e+02 Score=31.60 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 250 MHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 250 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
..+.+....+.-+.....+....+..|..+...+..++|-.+|++++..+|+ .....++.-++..|-...|...++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3444444544444433344445555666666777777777777777776666 456666666666666666666555
No 475
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=46.37 E-value=2.7e+02 Score=26.61 Aligned_cols=121 Identities=20% Similarity=0.025 Sum_probs=77.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---------------cHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN----CNDS---------------EAIA 458 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~----~~~~---------------~~~~ 458 (558)
..+++.+.++..++.+..+|--.+.....+.++.+ +|. +.+.......+. .-|. ....
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~--lG~-~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~ 187 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALER--LGY-AAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRA 187 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH--CCC-HHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHH
Confidence 56778899999999998888888888889999998 884 454444433321 1111 0111
Q ss_pred HH----------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc
Q 048034 459 LN----------------------------QLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH 510 (558)
Q Consensus 459 ~~----------------------------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 510 (558)
|. .-+......|..++|+..++..+... ....+.....+.+++++...
T Consensus 188 WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~----~s~R~rf~~rL~~A~l~~~~ 263 (301)
T TIGR03362 188 WLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQA----REPRERFHWRLLLARLLEQA 263 (301)
T ss_pred HHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC----CChHHHHHHHHHHHHHHHHc
Confidence 21 11344455666677777666544311 01123344555679999999
Q ss_pred CCHHHHHHHHHHHhc
Q 048034 511 NRFEDAEVYCTRLLD 525 (558)
Q Consensus 511 g~~~~A~~~~~~al~ 525 (558)
|.++-|...|..+.+
T Consensus 264 g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 264 GKAELAQQLYAALDQ 278 (301)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998765
No 476
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=46.32 E-value=2.8e+02 Score=26.78 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHhc----CCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH-HHHH
Q 048034 435 LHMLEEAIKCYRRAANC----NDSEAI--ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL-ATHC 507 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~----~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l-a~~~ 507 (558)
.++.++|++.+++.... +..++. ....+|.++...|+..++.+.+...-+.+.......+.....++.+ .+.|
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYy 167 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYY 167 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHH
Confidence 78999999999988754 221233 5567788999999999999999888776665555555444445555 5566
Q ss_pred HHcCCHHHHHHHHHHHhcc
Q 048034 508 RAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 508 ~~~g~~~~A~~~~~~al~~ 526 (558)
...|++..+....-+.+..
T Consensus 168 k~~~d~a~yYr~~L~YL~~ 186 (380)
T KOG2908|consen 168 KKIGDFASYYRHALLYLGC 186 (380)
T ss_pred HHHHhHHHHHHHHHHHhcc
Confidence 7778888776666555543
No 477
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.23 E-value=74 Score=27.97 Aligned_cols=50 Identities=26% Similarity=0.249 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCC
Q 048034 158 LISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPW 208 (558)
Q Consensus 158 l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 208 (558)
+....+..++..... .++.++..++.++...|+.++|.....++...+|.
T Consensus 127 l~~~~~~a~~~l~~~-P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRR-PDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 333334444444433 48889999999999999999999999999999993
No 478
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.18 E-value=1.3e+02 Score=23.01 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhhh-CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHH
Q 048034 157 ELISLERELSTLRK-NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSW 213 (558)
Q Consensus 157 ~l~~~~~~l~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 213 (558)
+...+.+.+++... ..+.-|-.+-.+|..|...|+-+.|..-|+.--.++|.+....
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 34455555666543 3456688999999999999999999999999888899765443
No 479
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=45.88 E-value=2.5e+02 Score=27.88 Aligned_cols=133 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
| +++......+++.+--++-.+..+........+|..+.-| -..+.-..+..-.
T Consensus 152 D-Fvyqfq~f~~yr~n~~krn~deie~l~si~sn~wniy~iL-------------------------nil~slv~ksqi~ 205 (525)
T KOG3677|consen 152 D-FVYQFQEFKQYRANAEKRNKDEIENLQSIFSNNWNIYWIL-------------------------NILHSLVDKSQIS 205 (525)
T ss_pred H-HHHHHHHHHHHhcChhhcCHHHHHHHHhcccccchHHHHH-------------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcCCC---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH
Q 048034 255 LTKYEYLQGTFGFS---------------NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF 319 (558)
Q Consensus 255 ~~~~~~~~~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 319 (558)
+..=......+|.. ...+..+-+.+.-+|| .+| -.+.++++|....
T Consensus 206 ~ql~~~~s~~dp~~va~~~g~s~~y~~LgyfsL~GLlR~H~lLgD-hQa---t~q~idi~pk~iy--------------- 266 (525)
T KOG3677|consen 206 IQLTASVSNKDPALVALIFGASQPYANLGYFSLLGLLRMHILLGD-HQA---TSQILDIMPKEIY--------------- 266 (525)
T ss_pred HHHHHHhcCCChhhhhhhhccccHHHhhhHHHHHHHHHHHHHhhh-hHh---hhhhhhcCchhhc---------------
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHH
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRAL 364 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 364 (558)
...|..-.+ +.+|-+|...++|.+|++.|-..+
T Consensus 267 -----------~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 267 -----------GTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred -----------CcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.10 E-value=2.2e+02 Score=25.22 Aligned_cols=34 Identities=9% Similarity=-0.077 Sum_probs=26.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHH
Q 048034 184 LVLKDKGSENLARTVLVESVNSYPWNWNSWLELQ 217 (558)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 217 (558)
......|+++.|-.+|.-.++..+-++.....+|
T Consensus 49 h~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG 82 (199)
T PF04090_consen 49 HLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIG 82 (199)
T ss_pred HHHHHhccHHHHHHHHHHHHcCCCCChHhcchHH
Confidence 4446789999999999999998877776655553
No 481
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.43 E-value=86 Score=33.64 Aligned_cols=108 Identities=19% Similarity=0.108 Sum_probs=82.3
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH--HcCCHHHHHHHHHHHHhcCCCCH
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE--MMHMPFYALHYFRKSVFLQPNDS 420 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~--~~~~~~~A~~~~~~a~~~~p~~~ 420 (558)
=|+..+..+++..|.--|..++.+-|..... ......+.+.+|. ..|+|..++.-..-++...|...
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~ 127 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAIPECELALESQPRIS 127 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHH
Confidence 4677888889999988888888888853321 2223444555554 45688889988899999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
.++...+.+|.. .++++-|++...-.....|.+..+.....
T Consensus 128 ~~Ll~r~~~y~a--l~k~d~a~rdl~i~~~~~p~~~~~~eif~ 168 (748)
T KOG4151|consen 128 KALLKRARKYEA--LNKLDLAVRDLRIVEKMDPSNVSASEIFE 168 (748)
T ss_pred HHHhhhhhHHHH--HHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 999999999999 99999999998888888888855444333
No 482
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.96 E-value=5.1e+02 Score=29.02 Aligned_cols=163 Identities=13% Similarity=0.040 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHc----CCCCcchHHHHHHHHHhcCCH--hHHHHHHHHHhhcCCCChhH------
Q 048034 272 QAQIAKAQYSLREFEQVEVVFEELLRN----DPYRVEDMDMYSNVLYAKECF--SALSYLAHRVFTTDKYRPES------ 339 (558)
Q Consensus 272 ~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~~~~~~--~~a~~l~~~~~~~~~~~~~~------ 339 (558)
+..++..|...|+.++|++++.+.... ++...+.+...-..+-..+.. +-...+..-.+..+|....-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 345666777777777777777777652 222223333322222223322 33444444444444432110
Q ss_pred -------HHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH--------cCCHHH
Q 048034 340 -------CCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM--------MHMPFY 404 (558)
Q Consensus 340 -------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~ 404 (558)
-.....-|......+-++.|++.++..+...... .+..+...|.. .++-++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~--------------lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTL--------------LHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchH--------------HHHHHHHHHHHHHhhccCchhcccc
Confidence 0112233556677888999999988766543221 11222222211 111223
Q ss_pred HHHH--HHHHHh-------cCCC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 405 ALHY--FRKSVF-------LQPN-------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 405 A~~~--~~~a~~-------~~p~-------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
+.+. .++... ..|+ ....|...+.++.+ +|+.++|+..|-..+.
T Consensus 653 ~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~r--l~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 653 APETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGR--LGKHEEALHIYVHELD 712 (877)
T ss_pred chhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhh--hhhHHHHHHHHHHHhc
Confidence 3333 222221 1222 24567888999998 9999999999887665
No 483
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.85 E-value=44 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVN 204 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (558)
+.-+...|.-.-..|++++|+.+|.+++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34466678888899999999999999976
No 484
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.57 E-value=96 Score=22.71 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 436 HMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 436 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
+.|+.|..+..+++..+ ..|+.++|+.+|++++..+.+..
T Consensus 3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHHHHHHc
Confidence 34555655555555543 45888999999999998776554
No 485
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.42 E-value=98 Score=25.06 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 453 DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTR 522 (558)
Q Consensus 453 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 522 (558)
|....+|...+... +++.++|.-.... +.....+..|...|..+...|++.+|.+.|+.
T Consensus 66 ~RyLkiWi~ya~~~------~dp~~if~~L~~~-----~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 66 PRYLKIWLKYADNC------DEPRELFQFLYSK-----GIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33344555555442 2345555555441 13344555666678888888888888887763
No 486
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.94 E-value=81 Score=27.73 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
..++..++.+...| ++.++..++.++.. .|+.++|.....++....|
T Consensus 129 ~~~~~a~~~l~~~P-~~~~~~~~a~~l~~--~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRRP-DPNVYQRYALALAL--LGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Confidence 34455566666666 67788888888888 9999999999998888888
No 487
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=42.19 E-value=2.8e+02 Score=26.09 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHccCcCCHHHHH
Q 048034 353 HEKSVVYFRRALKLNKNYLSAWT 375 (558)
Q Consensus 353 ~~~A~~~~~~al~~~p~~~~~~~ 375 (558)
.+.|...+.+|+.++|+...+..
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~ 137 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAI 137 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH
Confidence 37899999999999999766533
No 488
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.28 E-value=74 Score=30.80 Aligned_cols=62 Identities=13% Similarity=-0.016 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE-REGPNMVEALIFLATHCRAHNRFEDAEVY 519 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 519 (558)
-+...|+-.+.++++++|...|..+..+..... ........+++.+|..++..++++.+.-.
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456678888888999999999988888766554 33456678888889988888877665543
No 489
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=40.56 E-value=2.9e+02 Score=28.75 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 455 EAIALNQLAKLHHA--LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 455 ~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
.|.++.+||.+-.- ...-..++.+|.+++...+... +.....-|..+|-.+.+.+++.+|+.++-.+-.
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y--~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYY--NNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHC--TT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHh--cCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555432 2335667888888887544332 244456778899999999999999999988753
No 490
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.58 E-value=2.6e+02 Score=29.51 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=57.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 477 (558)
+....+.+....+.-+.-...........+..+-. .+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD--VNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh--hhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 44455556656555554444555666677777777 88888888888888888877 667778888888888888877
Q ss_pred HHH
Q 048034 478 YYK 480 (558)
Q Consensus 478 ~~~ 480 (558)
.+.
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 776
No 491
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=39.53 E-value=66 Score=19.02 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 048034 402 PFYALHYFRKSVF 414 (558)
Q Consensus 402 ~~~A~~~~~~a~~ 414 (558)
+++|+.+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4556666655544
No 492
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=39.38 E-value=3.3e+02 Score=25.63 Aligned_cols=36 Identities=17% Similarity=0.030 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHH
Q 048034 402 PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLE 439 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~ 439 (558)
.+.|...+.+|+.++|....+...+-.+-.. .|..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~--fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAY--FGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhh--cCCch
Confidence 4678888999999999988888877777666 66654
No 493
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.06 E-value=2.1e+02 Score=23.19 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=46.5
Q ss_pred hHHHHHHHhhcc--CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCCchHHHHHHH
Q 048034 106 YRRAAHVLRDQT--GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTMDPFILYLYG 183 (558)
Q Consensus 106 ~~rA~~~l~~~~--~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g 183 (558)
.+||+..+.+.. .+...||+.+..|.-.-.. ..+ +...|.. ...+..-+..|-..|
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~~d-p~~--------------------if~~L~~-~~IG~~~AlfYe~~A 106 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNCDE-PRE--------------------LFQFLYS-KGIGTKLALFYEEWA 106 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC-HHH--------------------HHHHHHH-CCcchhhHHHHHHHH
Confidence 566777766653 3667788887777633211 111 1222211 122345566777889
Q ss_pred HHHHhcCChHHHHHHHHH
Q 048034 184 LVLKDKGSENLARTVLVE 201 (558)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~ 201 (558)
..+...|++.+|..+|+.
T Consensus 107 ~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 107 QLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 999999999999999874
No 494
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.02 E-value=96 Score=33.30 Aligned_cols=90 Identities=20% Similarity=0.081 Sum_probs=72.2
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFLQPN----DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
-|...+..+++..|..-|..++.+-|. ......+.+.|+..-..|++.+++.-..-++...|....++...+.+|.
T Consensus 59 E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 59 EGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 356677778888888888888888774 3455677788877644789999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHH
Q 048034 468 ALGRDEEAAFYYKK 481 (558)
Q Consensus 468 ~~g~~~~A~~~~~~ 481 (558)
..+..+-|++...-
T Consensus 139 al~k~d~a~rdl~i 152 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRI 152 (748)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888877433
No 495
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=38.62 E-value=92 Score=26.35 Aligned_cols=119 Identities=8% Similarity=-0.020 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhh--------------hcCHHHhhcCCCCchHHHHHHHHHH
Q 048034 179 LYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSL--------------CTTIDILNSINLNNHWMKDFFLAST 244 (558)
Q Consensus 179 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--------------~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (558)
....++.....|+.++|+..+.++....-.....|-.+... ..+....+.......--...-.+.-
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~ 84 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANE 84 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHH
Confidence 34567778889999999999999876544333333322100 0000000000112223333446888
Q ss_pred HHHHhchHHHHHHHHHHHhh-------cCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 048034 245 YQELRMHNEALTKYEYLQGT-------FGF-SNYLQAQIAKAQYSLREFEQVEVVFEELLR 297 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~-------~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 297 (558)
.++.|+...|.+.++.+-.. -|- ........|..+...|++.+|...+..++.
T Consensus 85 ~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 85 LLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 89999999999999887541 111 123445678889999999999999998875
No 496
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.25 E-value=1.3e+02 Score=29.14 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 048034 473 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGM 541 (558)
Q Consensus 473 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~ 541 (558)
++....+...+..++ .....+..|..+|.+....|.+++.+..|++|+.....-.++.+..+..+
T Consensus 120 eei~~~L~~li~~IP----~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKNIP----DAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 456666666666432 12345678888999999999999999999999987665566665544433
No 497
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=38.04 E-value=45 Score=32.67 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=10.8
Q ss_pred CCchHHHHHHHHHHHhcCC
Q 048034 173 TMDPFILYLYGLVLKDKGS 191 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~ 191 (558)
+.++..|..+|.++...+.
T Consensus 94 ~Lp~~FhaIYalALsELa~ 112 (404)
T PF12753_consen 94 ELPDRFHAIYALALSELAI 112 (404)
T ss_dssp GS-HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 3455667677776655443
No 498
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.31 E-value=62 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhh
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNS 205 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 205 (558)
.+.-+...|.-+-..|++++|+.+|..++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 499
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=35.28 E-value=2.4e+02 Score=29.34 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
-|..+|..+.+ .+++.+|+..+-.
T Consensus 320 PYty~gg~~yR--~~~~~eA~~~Wa~ 343 (618)
T PF05053_consen 320 PYTYLGGYYYR--HKRYREALRSWAE 343 (618)
T ss_dssp HHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred cceehhhHHHH--HHHHHHHHHHHHH
Confidence 34445555555 5555555544443
No 500
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=34.71 E-value=1.5e+02 Score=21.53 Aligned_cols=16 Identities=13% Similarity=0.003 Sum_probs=7.6
Q ss_pred HcCCHHHHHHHHHHHH
Q 048034 398 MMHMPFYALHYFRKSV 413 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~ 413 (558)
..|++++|+.+|.+++
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3445555554444443
Done!