Query 048034
Match_columns 558
No_of_seqs 1051 out of 2994
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 09:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-38 5E-43 318.3 46.1 373 95-537 4-379 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-36 7.4E-41 302.6 43.4 332 156-536 13-344 (388)
3 2xpi_A Anaphase-promoting comp 100.0 6.4E-35 2.2E-39 309.0 48.3 416 91-535 118-588 (597)
4 3ieg_A DNAJ homolog subfamily 100.0 1.4E-33 4.8E-38 278.2 42.6 314 175-537 2-346 (359)
5 2y4t_A DNAJ homolog subfamily 100.0 2.1E-33 7.2E-38 286.5 39.4 321 165-534 15-366 (450)
6 2gw1_A Mitochondrial precursor 100.0 1.5E-33 5.1E-38 292.5 36.3 398 91-534 7-486 (514)
7 2y4t_A DNAJ homolog subfamily 100.0 3.6E-32 1.2E-36 277.4 39.4 350 91-529 27-413 (450)
8 3fp2_A TPR repeat-containing p 100.0 1.2E-31 4.3E-36 279.8 37.7 396 92-534 27-499 (537)
9 2xpi_A Anaphase-promoting comp 100.0 2E-31 6.8E-36 282.1 39.2 367 92-508 202-595 (597)
10 3ieg_A DNAJ homolog subfamily 100.0 4.7E-31 1.6E-35 260.1 38.3 318 157-511 18-354 (359)
11 3hym_B Cell division cycle pro 100.0 1.8E-31 6.1E-36 260.1 32.4 297 169-514 15-322 (330)
12 2gw1_A Mitochondrial precursor 100.0 3.3E-31 1.1E-35 274.9 34.2 246 270-534 187-452 (514)
13 3fp2_A TPR repeat-containing p 100.0 9.1E-31 3.1E-35 273.3 34.4 330 175-534 24-465 (537)
14 3hym_B Cell division cycle pro 100.0 1.6E-30 5.4E-35 253.4 33.8 281 241-545 28-318 (330)
15 4g1t_A Interferon-induced prot 100.0 3.9E-30 1.3E-34 264.1 30.2 371 92-532 52-465 (472)
16 1fch_A Peroxisomal targeting s 100.0 1.8E-30 6.3E-35 257.3 25.4 291 177-526 65-359 (368)
17 1fch_A Peroxisomal targeting s 100.0 2.2E-29 7.5E-34 249.5 29.1 260 155-489 77-363 (368)
18 4g1t_A Interferon-induced prot 100.0 3.7E-28 1.3E-32 249.3 38.0 327 158-531 31-406 (472)
19 4eqf_A PEX5-related protein; a 100.0 1.1E-29 3.9E-34 251.5 24.7 270 175-486 64-357 (365)
20 3cv0_A Peroxisome targeting si 100.0 1.3E-28 4.3E-33 239.5 28.2 273 175-489 20-319 (327)
21 4eqf_A PEX5-related protein; a 100.0 9.4E-29 3.2E-33 244.9 25.3 270 241-525 71-355 (365)
22 2h6f_A Protein farnesyltransfe 100.0 2.8E-28 9.6E-33 240.2 25.6 258 169-510 90-366 (382)
23 2h6f_A Protein farnesyltransfe 100.0 3.4E-28 1.2E-32 239.6 24.2 259 201-543 88-365 (382)
24 3cv0_A Peroxisome targeting si 100.0 1.5E-27 5.2E-32 231.9 28.5 265 239-527 25-316 (327)
25 2xm6_A Protein corresponding t 100.0 8.8E-24 3E-28 217.7 47.4 353 91-528 40-434 (490)
26 3u4t_A TPR repeat-containing p 100.0 5.7E-26 1.9E-30 214.9 27.6 247 240-534 8-258 (272)
27 3sf4_A G-protein-signaling mod 99.9 1.1E-26 3.6E-31 233.2 21.2 311 173-516 6-366 (406)
28 3uq3_A Heat shock protein STI1 99.9 1.1E-25 3.8E-30 210.7 25.4 241 174-465 3-256 (258)
29 2pl2_A Hypothetical conserved 99.9 5.3E-26 1.8E-30 207.3 22.2 201 266-525 2-213 (217)
30 2pl2_A Hypothetical conserved 99.9 1.1E-25 3.7E-30 205.2 23.5 210 173-482 2-211 (217)
31 3u4t_A TPR repeat-containing p 99.9 9E-26 3.1E-30 213.4 23.4 252 175-469 2-268 (272)
32 4a1s_A PINS, partner of inscut 99.9 4.3E-26 1.5E-30 229.5 20.4 295 174-529 46-375 (411)
33 3uq3_A Heat shock protein STI1 99.9 9.7E-25 3.3E-29 204.3 26.2 233 235-527 5-237 (258)
34 3mkr_A Coatomer subunit epsilo 99.9 2E-24 6.7E-29 205.9 27.8 278 184-520 7-288 (291)
35 3ro2_A PINS homolog, G-protein 99.9 1.8E-25 6E-30 217.7 20.4 293 175-528 4-334 (338)
36 3mkr_A Coatomer subunit epsilo 99.9 2.1E-24 7.1E-29 205.7 26.8 272 241-545 5-282 (291)
37 2xm6_A Protein corresponding t 99.9 2.4E-22 8.2E-27 207.0 42.4 249 241-527 117-397 (490)
38 2ooe_A Cleavage stimulation fa 99.9 1.1E-22 3.7E-27 211.7 38.7 346 158-531 28-459 (530)
39 3sf4_A G-protein-signaling mod 99.9 2.1E-24 7.1E-29 216.4 20.0 279 236-526 10-336 (406)
40 2ooe_A Cleavage stimulation fa 99.9 8.6E-22 2.9E-26 204.9 38.5 393 92-529 15-495 (530)
41 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.1E-24 1.1E-28 203.0 18.0 254 242-551 12-269 (275)
42 2q7f_A YRRB protein; TPR, prot 99.9 1.5E-23 5.2E-28 194.4 21.7 221 174-470 21-241 (243)
43 3vtx_A MAMA; tetratricopeptide 99.9 3.6E-23 1.2E-27 183.3 22.1 172 335-530 3-174 (184)
44 2q7f_A YRRB protein; TPR, prot 99.9 5.5E-23 1.9E-27 190.6 20.5 217 237-511 25-241 (243)
45 3e4b_A ALGK; tetratricopeptide 99.9 4.5E-22 1.5E-26 202.0 28.9 347 94-527 7-388 (452)
46 2ho1_A Type 4 fimbrial biogene 99.9 6.3E-22 2.2E-26 184.7 26.8 215 173-461 33-248 (252)
47 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.3E-22 1.8E-26 187.6 25.0 249 154-445 17-269 (275)
48 4abn_A Tetratricopeptide repea 99.9 2.3E-22 7.8E-27 205.5 24.1 216 155-447 81-317 (474)
49 2vq2_A PILW, putative fimbrial 99.9 1.5E-21 5.1E-26 178.4 27.2 217 172-462 4-222 (225)
50 3vtx_A MAMA; tetratricopeptide 99.9 4.4E-22 1.5E-26 176.3 22.1 172 268-456 4-175 (184)
51 3ulq_A Response regulator aspa 99.9 4E-22 1.4E-26 198.6 24.1 245 237-527 105-369 (383)
52 1ouv_A Conserved hypothetical 99.9 4.2E-21 1.4E-25 181.6 29.7 229 235-531 6-256 (273)
53 4abn_A Tetratricopeptide repea 99.9 1.6E-22 5.4E-27 206.6 21.0 217 248-482 81-318 (474)
54 1ouv_A Conserved hypothetical 99.9 7.5E-21 2.6E-25 179.8 30.8 227 172-484 2-250 (273)
55 2ho1_A Type 4 fimbrial biogene 99.9 1.5E-21 5.2E-26 182.1 25.5 210 235-502 37-248 (252)
56 2vq2_A PILW, putative fimbrial 99.9 3.4E-21 1.2E-25 176.0 27.1 215 233-503 6-222 (225)
57 2ond_A Cleavage stimulation fa 99.9 4.6E-21 1.6E-25 184.6 27.1 225 193-486 33-271 (308)
58 4a1s_A PINS, partner of inscut 99.9 3.4E-22 1.2E-26 200.9 17.9 258 165-486 71-373 (411)
59 2ond_A Cleavage stimulation fa 99.9 9.8E-21 3.3E-25 182.4 27.0 227 252-531 33-275 (308)
60 4gyw_A UDP-N-acetylglucosamine 99.9 4.6E-22 1.6E-26 210.9 18.7 172 332-527 4-175 (723)
61 4i17_A Hypothetical protein; T 99.9 4.9E-21 1.7E-25 175.9 21.6 184 334-542 4-224 (228)
62 4i17_A Hypothetical protein; T 99.9 7.3E-21 2.5E-25 174.7 22.5 197 238-485 10-209 (228)
63 3ro2_A PINS homolog, G-protein 99.9 1.1E-21 3.9E-26 190.7 18.0 270 159-486 22-333 (338)
64 3ulq_A Response regulator aspa 99.9 1E-20 3.4E-25 188.4 25.1 250 176-487 103-370 (383)
65 4gyw_A UDP-N-acetylglucosamine 99.9 5.3E-21 1.8E-25 202.8 21.8 174 264-488 4-177 (723)
66 3e4b_A ALGK; tetratricopeptide 99.9 5.8E-21 2E-25 193.8 21.3 308 155-530 16-355 (452)
67 3q15_A PSP28, response regulat 99.9 1.2E-20 4.2E-25 187.4 22.4 244 237-526 103-365 (378)
68 3nf1_A KLC 1, kinesin light ch 99.9 2.4E-21 8.4E-26 186.4 13.7 251 231-528 23-309 (311)
69 1xi4_A Clathrin heavy chain; a 99.9 2.7E-18 9.4E-23 185.1 37.4 347 95-522 1054-1441(1630)
70 3qky_A Outer membrane assembly 99.9 5.8E-20 2E-24 172.4 21.8 214 172-441 11-251 (261)
71 3dra_A Protein farnesyltransfe 99.8 3.6E-19 1.2E-23 168.3 26.0 242 242-538 39-300 (306)
72 3qky_A Outer membrane assembly 99.8 5E-20 1.7E-24 172.9 19.8 205 239-476 19-252 (261)
73 3q15_A PSP28, response regulat 99.8 2.2E-19 7.6E-24 178.3 25.4 324 95-488 15-368 (378)
74 1qqe_A Vesicular transport pro 99.8 3.3E-20 1.1E-24 177.1 18.4 232 250-541 32-284 (292)
75 1hz4_A MALT regulatory protein 99.8 1.4E-18 4.9E-23 172.1 30.0 308 176-529 14-352 (373)
76 3nf1_A KLC 1, kinesin light ch 99.8 8E-21 2.7E-25 182.8 13.0 247 172-454 23-310 (311)
77 3urz_A Uncharacterized protein 99.8 9.3E-20 3.2E-24 164.6 18.6 199 336-546 3-204 (208)
78 2pzi_A Probable serine/threoni 99.8 2.2E-19 7.6E-24 191.5 23.1 212 263-495 388-608 (681)
79 1hz4_A MALT regulatory protein 99.8 2.8E-18 9.7E-23 169.9 28.3 276 239-527 18-323 (373)
80 1xi4_A Clathrin heavy chain; a 99.8 1.9E-17 6.4E-22 178.7 36.2 347 91-527 986-1346(1630)
81 1qqe_A Vesicular transport pro 99.8 1.6E-19 5.6E-24 172.3 17.5 220 242-507 44-284 (292)
82 4ga2_A E3 SUMO-protein ligase 99.8 4.7E-20 1.6E-24 157.0 11.8 147 342-512 2-149 (150)
83 3as5_A MAMA; tetratricopeptide 99.8 6E-19 2.1E-23 155.6 19.1 172 336-531 7-178 (186)
84 2pzi_A Probable serine/threoni 99.8 2.5E-19 8.6E-24 191.1 19.5 200 297-524 388-603 (681)
85 3dra_A Protein farnesyltransfe 99.8 8.9E-18 3E-22 158.7 27.4 233 190-464 47-301 (306)
86 3edt_B KLC 2, kinesin light ch 99.8 6.5E-19 2.2E-23 166.7 15.6 240 246-526 12-281 (283)
87 4ga2_A E3 SUMO-protein ligase 99.8 2.1E-19 7.3E-24 152.9 10.3 146 275-471 3-149 (150)
88 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.3E-17 7.7E-22 150.9 23.0 191 175-419 3-217 (225)
89 3urz_A Uncharacterized protein 99.8 6.8E-18 2.3E-22 152.3 17.9 186 175-370 3-190 (208)
90 3as5_A MAMA; tetratricopeptide 99.8 1.4E-17 4.8E-22 146.7 19.6 174 174-372 6-179 (186)
91 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.7E-17 9.3E-22 150.4 21.7 198 238-453 7-215 (225)
92 3dss_A Geranylgeranyl transfer 99.8 7.4E-16 2.5E-20 146.2 30.8 238 187-507 40-319 (331)
93 3edt_B KLC 2, kinesin light ch 99.8 3.3E-18 1.1E-22 161.8 14.6 233 187-484 12-280 (283)
94 3dss_A Geranylgeranyl transfer 99.8 4.6E-16 1.6E-20 147.7 29.1 236 246-539 40-317 (331)
95 4gco_A Protein STI-1; structur 99.8 6E-18 2E-22 139.0 13.6 121 329-466 5-125 (126)
96 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.3E-23 169.5 8.9 305 174-524 30-353 (449)
97 2r5s_A Uncharacterized protein 99.7 9.1E-18 3.1E-22 147.2 13.4 168 334-525 3-172 (176)
98 3q7a_A Farnesyltransferase alp 99.7 2.5E-16 8.6E-21 150.0 22.9 242 248-540 67-346 (349)
99 4gco_A Protein STI-1; structur 99.7 5.6E-17 1.9E-21 133.2 14.8 114 385-507 12-125 (126)
100 1b89_A Protein (clathrin heavy 99.7 6.5E-18 2.2E-22 164.5 10.5 260 184-526 11-272 (449)
101 3q7a_A Farnesyltransferase alp 99.7 1.4E-15 4.9E-20 144.8 26.2 243 182-506 60-346 (349)
102 3qou_A Protein YBBN; thioredox 99.7 9.8E-17 3.4E-21 152.4 17.9 168 334-525 114-283 (287)
103 3gyz_A Chaperone protein IPGC; 99.7 1.4E-17 4.7E-22 140.9 10.2 119 404-531 20-138 (151)
104 3qou_A Protein YBBN; thioredox 99.7 3E-16 1E-20 149.0 18.9 169 265-484 113-283 (287)
105 2r5s_A Uncharacterized protein 99.7 1.4E-16 4.7E-21 139.6 14.9 161 306-484 9-172 (176)
106 2ifu_A Gamma-SNAP; membrane fu 99.7 2.5E-16 8.5E-21 151.3 17.2 232 247-518 3-253 (307)
107 3gyz_A Chaperone protein IPGC; 99.7 6.2E-17 2.1E-21 136.9 11.3 111 358-485 23-133 (151)
108 2ifu_A Gamma-SNAP; membrane fu 99.7 2E-16 6.8E-21 152.0 15.7 212 281-530 3-227 (307)
109 2vsy_A XCC0866; transferase, g 99.7 4.1E-16 1.4E-20 163.4 19.2 157 350-530 2-161 (568)
110 4f3v_A ESX-1 secretion system 99.7 2.4E-16 8.2E-21 145.2 14.9 213 281-538 18-247 (282)
111 2vsy_A XCC0866; transferase, g 99.7 7.1E-16 2.4E-20 161.6 18.0 158 323-504 9-169 (568)
112 4e6h_A MRNA 3'-END-processing 99.7 1.8E-13 6.1E-18 143.5 35.4 336 165-528 55-535 (679)
113 4f3v_A ESX-1 secretion system 99.7 5.9E-16 2E-20 142.6 14.3 207 239-463 11-248 (282)
114 3rjv_A Putative SEL1 repeat pr 99.7 5.8E-15 2E-19 133.4 19.2 165 335-527 16-198 (212)
115 2qfc_A PLCR protein; TPR, HTH, 99.7 1.9E-14 6.4E-19 137.2 23.7 179 336-526 74-266 (293)
116 2fo7_A Synthetic consensus TPR 99.7 5.3E-15 1.8E-19 122.4 17.3 134 387-529 2-135 (136)
117 1p5q_A FKBP52, FK506-binding p 99.6 3.3E-17 1.1E-21 159.3 3.8 161 321-487 131-296 (336)
118 1p5q_A FKBP52, FK506-binding p 99.6 4.5E-16 1.5E-20 151.3 11.0 134 383-525 144-293 (336)
119 3rjv_A Putative SEL1 repeat pr 99.6 3.7E-14 1.3E-18 128.0 22.6 178 194-453 4-199 (212)
120 4e6h_A MRNA 3'-END-processing 99.6 1E-12 3.4E-17 137.8 36.7 412 93-532 69-576 (679)
121 2c2l_A CHIP, carboxy terminus 99.6 1.9E-15 6.4E-20 143.0 14.6 106 173-303 1-106 (281)
122 2vgx_A Chaperone SYCD; alterna 99.6 6.2E-16 2.1E-20 130.9 9.8 113 357-486 7-119 (148)
123 2vgx_A Chaperone SYCD; alterna 99.6 1.4E-15 4.7E-20 128.8 10.7 117 406-531 7-123 (148)
124 2qfc_A PLCR protein; TPR, HTH, 99.6 2.8E-14 9.7E-19 136.0 20.3 179 270-487 76-268 (293)
125 3upv_A Heat shock protein STI1 99.6 1.6E-14 5.4E-19 118.6 15.8 123 384-509 2-124 (126)
126 2c2l_A CHIP, carboxy terminus 99.6 3.9E-15 1.3E-19 140.8 13.8 197 266-525 1-198 (281)
127 2fo7_A Synthetic consensus TPR 99.6 2.5E-14 8.5E-19 118.3 17.0 130 338-484 2-131 (136)
128 2xcb_A PCRH, regulatory protei 99.6 2.1E-15 7.3E-20 126.8 9.8 116 326-458 7-122 (142)
129 3upv_A Heat shock protein STI1 99.6 1.5E-14 5.3E-19 118.7 14.5 118 335-469 2-125 (126)
130 2xcb_A PCRH, regulatory protei 99.6 3.3E-15 1.1E-19 125.6 10.5 112 358-486 5-116 (142)
131 3u3w_A Transcriptional activat 99.6 8E-14 2.7E-18 132.8 21.1 175 340-526 78-266 (293)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.6 2.5E-14 8.4E-19 129.3 16.7 127 338-484 7-149 (213)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.6 7.3E-14 2.5E-18 126.1 19.7 141 386-531 6-155 (213)
134 1a17_A Serine/threonine protei 99.6 6.3E-14 2.1E-18 120.9 17.5 135 337-488 13-149 (166)
135 3u3w_A Transcriptional activat 99.6 4.9E-14 1.7E-18 134.3 18.2 176 274-488 80-269 (293)
136 1a17_A Serine/threonine protei 99.6 5.4E-14 1.8E-18 121.3 16.6 133 385-526 12-146 (166)
137 3mv2_B Coatomer subunit epsilo 99.6 1E-13 3.6E-18 129.3 19.5 256 242-533 20-289 (310)
138 2e2e_A Formate-dependent nitri 99.6 1.4E-14 4.8E-19 126.8 12.8 127 396-531 20-149 (177)
139 1dce_A Protein (RAB geranylger 99.6 8E-15 2.7E-19 151.7 13.0 185 321-529 47-270 (567)
140 2lni_A Stress-induced-phosphop 99.6 5.4E-14 1.8E-18 116.2 14.9 121 383-512 13-133 (133)
141 2fbn_A 70 kDa peptidylprolyl i 99.6 4.8E-15 1.6E-19 132.4 8.6 161 341-525 8-185 (198)
142 2lni_A Stress-induced-phosphop 99.6 5.7E-14 1.9E-18 116.1 14.5 123 332-471 11-133 (133)
143 2vyi_A SGTA protein; chaperone 99.6 9E-14 3.1E-18 114.3 15.0 121 384-513 10-130 (131)
144 2vyi_A SGTA protein; chaperone 99.5 5.4E-14 1.8E-18 115.7 13.3 123 333-472 8-130 (131)
145 4gcn_A Protein STI-1; structur 99.5 1.1E-13 3.6E-18 113.7 14.6 112 420-534 8-119 (127)
146 3sz7_A HSC70 cochaperone (SGT) 99.5 5.6E-14 1.9E-18 121.2 13.2 116 333-465 7-122 (164)
147 1dce_A Protein (RAB geranylger 99.5 1.2E-13 4.1E-18 143.0 18.0 178 246-474 39-244 (567)
148 2e2e_A Formate-dependent nitri 99.5 3.2E-14 1.1E-18 124.5 11.7 121 347-484 20-143 (177)
149 2hr2_A Hypothetical protein; a 99.5 3.2E-14 1.1E-18 118.6 10.3 117 337-458 11-138 (159)
150 2fbn_A 70 kDa peptidylprolyl i 99.5 1.2E-14 4.1E-19 129.8 8.5 146 336-483 37-184 (198)
151 3sz7_A HSC70 cochaperone (SGT) 99.5 9.3E-14 3.2E-18 119.8 13.7 113 385-506 10-122 (164)
152 4gcn_A Protein STI-1; structur 99.5 1.5E-13 5E-18 112.9 13.7 98 385-484 7-111 (127)
153 3mv2_B Coatomer subunit epsilo 99.5 5.8E-13 2E-17 124.3 18.8 183 163-373 87-289 (310)
154 2hr2_A Hypothetical protein; a 99.5 4.1E-13 1.4E-17 111.8 15.9 108 386-495 11-141 (159)
155 1na0_A Designed protein CTPR3; 99.5 7E-13 2.4E-17 107.9 16.2 121 333-470 4-125 (125)
156 3gw4_A Uncharacterized protein 99.5 4E-13 1.4E-17 120.1 15.9 161 348-526 3-176 (203)
157 3q49_B STIP1 homology and U bo 99.5 1.9E-13 6.6E-18 113.8 12.7 119 332-467 4-127 (137)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.9E-14 6.6E-19 145.9 7.6 152 349-524 246-413 (457)
159 1na0_A Designed protein CTPR3; 99.5 1.2E-12 4.3E-17 106.4 16.6 117 386-511 9-125 (125)
160 3q49_B STIP1 homology and U bo 99.5 3.4E-13 1.2E-17 112.2 13.3 123 384-510 7-129 (137)
161 4b4t_Q 26S proteasome regulato 99.5 2E-13 6.8E-18 137.8 13.5 229 269-525 4-244 (434)
162 1hxi_A PEX5, peroxisome target 99.5 2.9E-13 9.9E-18 110.0 11.8 102 338-456 18-119 (121)
163 3rkv_A Putative peptidylprolyl 99.5 2.9E-13 9.9E-18 116.5 12.4 128 337-471 11-147 (162)
164 1elw_A TPR1-domain of HOP; HOP 99.5 1.3E-12 4.3E-17 105.2 15.5 114 385-507 3-116 (118)
165 1elw_A TPR1-domain of HOP; HOP 99.5 1.2E-12 4E-17 105.4 15.2 113 337-466 4-116 (118)
166 1hxi_A PEX5, peroxisome target 99.5 3E-13 1E-17 109.9 11.4 95 388-484 19-113 (121)
167 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.6E-14 1.6E-18 143.1 8.1 148 331-484 262-414 (457)
168 3gw4_A Uncharacterized protein 99.5 2.6E-13 8.9E-18 121.3 11.7 143 335-488 24-179 (203)
169 3rkv_A Putative peptidylprolyl 99.5 3.7E-13 1.3E-17 115.8 12.2 119 386-513 11-148 (162)
170 2uy1_A Cleavage stimulation fa 99.5 1.9E-10 6.5E-15 117.1 33.8 328 177-525 15-412 (493)
171 2dba_A Smooth muscle cell asso 99.5 1.7E-12 5.9E-17 109.3 15.2 124 331-468 22-145 (148)
172 2dba_A Smooth muscle cell asso 99.4 2.6E-12 8.9E-17 108.2 14.7 118 383-509 25-145 (148)
173 1wao_1 Serine/threonine protei 99.4 5.8E-14 2E-18 142.9 4.9 135 386-529 6-153 (477)
174 2xev_A YBGF; tetratricopeptide 99.4 5E-12 1.7E-16 103.8 15.0 120 338-471 3-125 (129)
175 4b4t_Q 26S proteasome regulato 99.4 6.4E-12 2.2E-16 126.7 18.9 210 241-489 10-249 (434)
176 2kck_A TPR repeat; tetratricop 99.4 1.6E-12 5.5E-17 103.5 11.6 106 333-455 2-110 (112)
177 2xev_A YBGF; tetratricopeptide 99.4 4.4E-12 1.5E-16 104.1 14.5 116 388-512 4-125 (129)
178 2if4_A ATFKBP42; FKBP-like, al 99.4 1.7E-13 6E-18 133.0 6.5 138 386-532 179-334 (338)
179 1elr_A TPR2A-domain of HOP; HO 99.4 2E-12 6.8E-17 106.2 12.1 117 385-511 3-126 (131)
180 2kck_A TPR repeat; tetratricop 99.4 1.6E-12 5.3E-17 103.6 11.0 105 416-529 2-109 (112)
181 3ro3_A PINS homolog, G-protein 99.4 2.2E-12 7.4E-17 110.3 12.0 139 386-527 9-159 (164)
182 1elr_A TPR2A-domain of HOP; HO 99.4 2.3E-12 7.8E-17 105.8 11.3 117 336-470 3-126 (131)
183 1ihg_A Cyclophilin 40; ppiase 99.4 5.2E-12 1.8E-16 123.9 14.7 135 337-477 223-362 (370)
184 2if4_A ATFKBP42; FKBP-like, al 99.4 1.2E-12 4E-17 127.1 9.5 146 337-485 179-328 (338)
185 1ihg_A Cyclophilin 40; ppiase 99.4 5.1E-12 1.8E-16 123.9 14.0 124 387-519 224-363 (370)
186 1wao_1 Serine/threonine protei 99.4 3E-13 1E-17 137.6 4.7 127 337-480 6-134 (477)
187 3ro3_A PINS homolog, G-protein 99.4 5.1E-12 1.7E-16 107.9 11.7 139 337-486 9-159 (164)
188 3k9i_A BH0479 protein; putativ 99.3 2E-12 7E-17 104.3 8.1 99 349-461 2-100 (117)
189 3k9i_A BH0479 protein; putativ 99.3 2.3E-12 7.9E-17 104.0 6.7 95 398-501 2-99 (117)
190 1zu2_A Mitochondrial import re 99.3 4.5E-12 1.5E-16 105.3 8.5 92 348-456 13-125 (158)
191 2uy1_A Cleavage stimulation fa 99.3 1.2E-08 4.2E-13 103.7 35.3 348 92-487 16-415 (493)
192 1zu2_A Mitochondrial import re 99.3 7.1E-12 2.4E-16 104.1 9.0 92 397-497 13-125 (158)
193 2l6j_A TPR repeat-containing p 99.2 1.8E-11 6.1E-16 97.4 5.9 95 385-481 3-103 (111)
194 1na3_A Designed protein CTPR2; 99.2 3.4E-10 1.2E-14 86.2 11.4 84 385-470 8-91 (91)
195 2kat_A Uncharacterized protein 99.1 6.9E-10 2.4E-14 88.9 11.9 81 404-486 3-83 (115)
196 2kat_A Uncharacterized protein 99.1 3.8E-10 1.3E-14 90.4 10.0 84 354-454 2-85 (115)
197 2l6j_A TPR repeat-containing p 99.1 1.2E-10 4.1E-15 92.5 5.1 95 419-522 3-103 (111)
198 1na3_A Designed protein CTPR2; 99.0 2.1E-09 7.1E-14 81.7 10.8 85 418-511 7-91 (91)
199 3n71_A Histone lysine methyltr 99.0 2.4E-09 8.1E-14 108.1 13.2 134 390-525 313-463 (490)
200 1klx_A Cysteine rich protein B 99.0 5.2E-09 1.8E-13 86.8 13.1 111 400-527 9-127 (138)
201 3ma5_A Tetratricopeptide repea 99.0 2.4E-09 8.1E-14 83.3 9.3 69 383-453 4-72 (100)
202 3ma5_A Tetratricopeptide repea 99.0 2.9E-09 9.9E-14 82.8 9.8 70 415-486 2-71 (100)
203 1klx_A Cysteine rich protein B 98.9 2.6E-08 8.7E-13 82.5 13.7 122 351-504 9-136 (138)
204 3ly7_A Transcriptional activat 98.9 8.7E-08 3E-12 91.0 17.8 147 175-371 195-344 (372)
205 2kc7_A BFR218_protein; tetratr 98.9 5.8E-09 2E-13 80.8 8.0 87 389-485 3-90 (99)
206 2kc7_A BFR218_protein; tetratr 98.9 7.1E-09 2.4E-13 80.3 8.1 91 180-303 4-95 (99)
207 3n71_A Histone lysine methyltr 98.8 2.2E-08 7.6E-13 101.0 13.8 130 343-486 315-465 (490)
208 3ly7_A Transcriptional activat 98.8 9.4E-08 3.2E-12 90.8 16.9 69 414-485 271-339 (372)
209 3u64_A Protein TP_0956; tetrat 98.8 1.6E-07 5.5E-12 85.3 17.5 110 413-529 145-272 (301)
210 3u64_A Protein TP_0956; tetrat 98.8 1.9E-07 6.5E-12 84.8 17.1 178 252-455 49-273 (301)
211 3bee_A Putative YFRE protein; 98.6 3E-07 1E-11 69.7 10.2 83 452-542 2-87 (93)
212 3bee_A Putative YFRE protein; 98.5 6.4E-07 2.2E-11 67.9 9.7 70 384-455 4-76 (93)
213 3qwp_A SET and MYND domain-con 98.5 6.9E-07 2.4E-11 88.8 12.3 115 393-509 294-425 (429)
214 3qww_A SET and MYND domain-con 98.5 9.2E-07 3.1E-11 87.7 13.1 92 435-526 311-411 (433)
215 1pc2_A Mitochondria fission pr 98.5 1.8E-06 6.1E-11 70.8 12.3 90 437-533 13-107 (152)
216 2v5f_A Prolyl 4-hydroxylase su 98.5 2.1E-06 7.1E-11 66.9 11.6 80 455-534 4-83 (104)
217 2v5f_A Prolyl 4-hydroxylase su 98.4 1.7E-06 5.7E-11 67.4 10.6 77 385-463 4-87 (104)
218 3qww_A SET and MYND domain-con 98.4 6.9E-07 2.4E-11 88.6 10.0 92 397-490 309-416 (433)
219 1pc2_A Mitochondria fission pr 98.4 2.8E-06 9.7E-11 69.6 11.4 96 402-506 14-114 (152)
220 4g26_A Pentatricopeptide repea 98.4 5.7E-05 1.9E-09 76.7 23.3 180 339-540 28-219 (501)
221 4g26_A Pentatricopeptide repea 98.4 0.00012 4E-09 74.4 25.3 182 271-507 28-220 (501)
222 3ffl_A Anaphase-promoting comp 98.4 2.2E-07 7.4E-12 76.5 3.8 140 10-217 22-162 (167)
223 3qwp_A SET and MYND domain-con 98.3 5.9E-06 2E-10 82.1 14.4 94 430-525 297-399 (429)
224 4h7y_A Dual specificity protei 98.2 2.9E-05 9.8E-10 62.3 12.3 122 415-546 8-143 (161)
225 1nzn_A CGI-135 protein, fissio 97.9 0.00017 6E-09 56.7 11.2 92 435-533 14-110 (126)
226 4h7y_A Dual specificity protei 97.8 0.00041 1.4E-08 55.7 11.7 117 331-458 7-130 (161)
227 1nzn_A CGI-135 protein, fissio 97.7 0.0005 1.7E-08 54.1 11.6 97 401-506 16-117 (126)
228 3kae_A CDC27, possible protein 97.6 0.018 6.2E-07 47.0 19.9 200 92-301 35-240 (242)
229 3ffl_A Anaphase-promoting comp 97.6 0.00015 5E-09 59.8 7.6 112 387-508 21-166 (167)
230 1qsa_A Protein (soluble lytic 97.3 0.15 5E-06 52.7 26.9 245 248-525 85-347 (618)
231 1qsa_A Protein (soluble lytic 97.2 0.24 8.1E-06 51.1 27.1 358 91-526 7-410 (618)
232 1y8m_A FIS1; mitochondria, unk 97.1 0.026 8.7E-07 45.1 14.4 75 453-534 36-114 (144)
233 3txn_A 26S proteasome regulato 97.0 0.013 4.3E-07 56.7 14.5 175 338-525 20-209 (394)
234 4gns_B Protein CSD3, chitin bi 97.0 0.13 4.6E-06 53.9 22.8 115 248-363 261-397 (754)
235 3o48_A Mitochondria fission 1 96.9 0.015 5.3E-07 45.8 11.7 95 155-275 20-118 (134)
236 3o48_A Mitochondria fission 1 96.9 0.018 6.3E-07 45.3 12.0 75 453-534 37-115 (134)
237 1y8m_A FIS1; mitochondria, unk 96.7 0.02 6.7E-07 45.8 10.6 77 266-375 36-115 (144)
238 3kae_A CDC27, possible protein 96.5 0.26 9.1E-06 40.3 16.7 181 241-454 39-240 (242)
239 3txn_A 26S proteasome regulato 96.4 0.052 1.8E-06 52.4 14.1 180 177-415 20-210 (394)
240 3mkq_A Coatomer beta'-subunit; 96.4 0.37 1.3E-05 51.9 22.9 100 243-363 607-707 (814)
241 4gns_B Protein CSD3, chitin bi 96.4 0.029 9.9E-07 58.9 12.8 116 281-412 260-397 (754)
242 2ff4_A Probable regulatory pro 96.3 0.4 1.4E-05 46.5 20.0 101 393-495 122-244 (388)
243 3mkq_B Coatomer subunit alpha; 95.9 0.15 5E-06 42.8 12.6 101 245-363 15-115 (177)
244 4b4t_P 26S proteasome regulato 95.9 1.5 5.1E-05 43.3 21.9 196 282-486 29-248 (445)
245 3mkq_B Coatomer subunit alpha; 95.7 0.27 9.3E-06 41.2 13.1 80 385-482 7-86 (177)
246 3mkq_A Coatomer beta'-subunit; 95.6 0.91 3.1E-05 48.8 20.9 105 396-522 662-774 (814)
247 4b4t_P 26S proteasome regulato 95.4 0.33 1.1E-05 48.1 15.3 104 421-526 138-247 (445)
248 1ya0_A SMG-7 transcript varian 95.3 0.094 3.2E-06 52.4 10.8 80 387-468 153-232 (497)
249 1zbp_A Hypothetical protein VP 95.1 0.29 1E-05 43.8 12.3 113 155-267 10-132 (273)
250 3spa_A Mtrpol, DNA-directed RN 95.1 0.29 1E-05 52.7 14.1 97 387-485 128-230 (1134)
251 3spa_A Mtrpol, DNA-directed RN 94.9 0.27 9.1E-06 53.0 13.2 119 420-546 127-260 (1134)
252 4fhn_B Nucleoporin NUP120; pro 94.4 2.4 8.3E-05 47.6 20.5 211 308-526 817-1050(1139)
253 4b4t_S RPN3, 26S proteasome re 94.3 0.14 4.6E-06 50.9 8.7 66 386-455 231-303 (523)
254 1ya0_A SMG-7 transcript varian 94.1 0.26 8.9E-06 49.3 10.5 61 422-484 154-214 (497)
255 1zbp_A Hypothetical protein VP 94.0 0.54 1.8E-05 42.1 11.2 57 316-372 10-66 (273)
256 4ady_A RPN2, 26S proteasome re 93.3 10 0.00036 40.8 22.8 266 246-544 385-674 (963)
257 4b4t_S RPN3, 26S proteasome re 92.8 0.14 4.8E-06 50.7 6.1 132 395-530 145-303 (523)
258 2ff4_A Probable regulatory pro 92.8 0.79 2.7E-05 44.4 11.4 105 344-450 122-233 (388)
259 4b4t_R RPN7, 26S proteasome re 92.1 0.4 1.4E-05 47.3 8.4 95 388-484 133-236 (429)
260 4fhn_B Nucleoporin NUP120; pro 91.2 3.2 0.00011 46.6 15.5 122 391-524 817-965 (1139)
261 4b4t_R RPN7, 26S proteasome re 91.0 0.9 3.1E-05 44.7 9.6 103 336-452 130-238 (429)
262 2wpv_A GET4, UPF0363 protein Y 88.9 12 0.00042 34.5 14.7 116 390-521 37-158 (312)
263 4ady_A RPN2, 26S proteasome re 88.4 21 0.00072 38.5 17.8 218 249-484 425-657 (963)
264 3lvg_A Clathrin heavy chain 1; 82.5 0.0059 2E-07 59.4 -11.2 241 172-478 50-326 (624)
265 2wpv_A GET4, UPF0363 protein Y 81.3 33 0.0011 31.6 22.5 27 335-361 132-158 (312)
266 3esl_A Checkpoint serine/threo 79.6 26 0.0009 29.8 11.3 50 472-526 95-144 (202)
267 4gq2_M Nucleoporin NUP120; bet 78.2 20 0.00068 39.2 13.1 88 392-485 816-926 (950)
268 3lpz_A GET4 (YOR164C homolog); 78.1 44 0.0015 31.1 27.7 131 334-469 133-295 (336)
269 3lvg_A Clathrin heavy chain 1; 75.6 0.0079 2.7E-07 58.6 -12.6 260 92-407 56-325 (624)
270 1wy6_A Hypothetical protein ST 70.8 24 0.00082 27.9 8.0 50 435-484 104-153 (172)
271 4b4t_O 26S proteasome regulato 68.3 60 0.0021 31.1 12.5 95 429-525 85-197 (393)
272 2crb_A Nuclear receptor bindin 66.2 29 0.00099 25.0 7.0 36 458-493 17-52 (97)
273 3lpz_A GET4 (YOR164C homolog); 66.2 85 0.0029 29.2 24.9 149 266-432 133-294 (336)
274 4gq2_M Nucleoporin NUP120; bet 65.4 73 0.0025 34.8 13.8 112 243-372 818-933 (950)
275 2wvi_A Mitotic checkpoint seri 64.9 37 0.0013 27.8 8.6 36 492-527 91-126 (164)
276 3ax2_A Mitochondrial import re 58.7 29 0.00098 23.9 5.8 36 236-271 18-53 (73)
277 4a1g_A Mitotic checkpoint seri 58.3 32 0.0011 27.8 7.0 62 456-528 71-132 (152)
278 1wy6_A Hypothetical protein ST 56.3 73 0.0025 25.2 15.1 65 303-367 91-155 (172)
279 4aez_C MAD3, mitotic spindle c 56.1 65 0.0022 27.9 9.0 81 106-208 100-182 (223)
280 2ijq_A Hypothetical protein; s 55.6 53 0.0018 26.8 7.9 68 273-366 36-104 (161)
281 1om2_A Protein (mitochondrial 54.1 51 0.0017 24.1 6.7 37 235-271 20-56 (95)
282 3mv2_A Coatomer subunit alpha; 53.2 1.4E+02 0.0047 27.5 13.1 97 95-207 33-145 (325)
283 3esl_A Checkpoint serine/threo 51.9 86 0.0029 26.6 8.9 64 387-453 81-146 (202)
284 3mv2_A Coatomer subunit alpha; 51.8 1.5E+02 0.005 27.3 13.4 41 504-544 214-256 (325)
285 3ax2_A Mitochondrial import re 51.0 42 0.0014 23.1 5.6 32 390-421 21-52 (73)
286 2ijq_A Hypothetical protein; s 50.1 75 0.0025 25.9 8.0 59 239-297 36-103 (161)
287 3re2_A Predicted protein; meni 50.0 1.3E+02 0.0044 28.1 10.1 70 454-525 253-324 (472)
288 3t5v_B Nuclear mRNA export pro 49.8 36 0.0012 33.4 7.2 71 459-530 179-254 (455)
289 4a1g_A Mitotic checkpoint seri 49.5 1E+02 0.0035 24.8 10.7 82 106-209 51-134 (152)
290 2cwy_A Hypothetical protein TT 48.3 49 0.0017 24.1 6.1 62 274-365 6-67 (94)
291 2crb_A Nuclear receptor bindin 47.0 33 0.0011 24.7 4.6 27 421-449 16-42 (97)
292 2wvi_A Mitotic checkpoint seri 46.9 1.2E+02 0.004 24.8 10.7 82 106-209 46-129 (164)
293 2rpa_A Katanin P60 ATPase-cont 45.6 28 0.00097 24.3 4.1 27 499-525 14-40 (78)
294 3u84_A Menin; MLL, JUND, ledgf 44.5 1.6E+02 0.0055 28.1 10.0 84 454-539 275-366 (550)
295 3t5x_A PCI domain-containing p 44.5 36 0.0012 29.1 5.7 38 176-213 14-51 (203)
296 2w2u_A Hypothetical P60 katani 43.1 59 0.002 23.0 5.6 28 462-489 25-52 (83)
297 3mkr_B Coatomer subunit alpha; 41.8 2.1E+02 0.0072 26.3 12.7 94 95-207 21-133 (320)
298 3t5x_A PCI domain-containing p 39.3 54 0.0019 27.9 6.0 34 387-420 15-48 (203)
299 4aez_C MAD3, mitotic spindle c 39.3 1.9E+02 0.0064 25.0 9.9 62 456-528 120-181 (223)
300 2v6y_A AAA family ATPase, P60 38.3 67 0.0023 22.7 5.3 26 464-489 19-44 (83)
301 3t5v_B Nuclear mRNA export pro 37.0 61 0.0021 31.7 6.5 65 389-455 179-254 (455)
302 4a5x_A MITD1, MIT domain-conta 36.3 40 0.0014 24.1 3.9 25 466-490 26-50 (86)
303 1wfd_A Hypothetical protein 15 35.8 1.2E+02 0.0042 21.9 8.3 32 464-495 23-54 (93)
304 3mkr_B Coatomer subunit alpha; 35.8 2.6E+02 0.0089 25.6 16.4 41 504-544 205-247 (320)
305 2rpa_A Katanin P60 ATPase-cont 35.5 1.1E+02 0.0038 21.3 6.9 33 458-490 14-46 (78)
306 4gq4_A Menin; tumor suppressor 34.8 3.1E+02 0.011 26.2 10.8 83 454-538 260-350 (489)
307 4a5x_A MITD1, MIT domain-conta 32.8 1.3E+02 0.0045 21.3 8.8 16 435-450 29-44 (86)
308 3bu8_A Telomeric repeat-bindin 31.4 2E+02 0.007 24.6 7.8 61 252-312 89-157 (235)
309 2w2u_A Hypothetical P60 katani 30.1 63 0.0021 22.9 4.0 27 178-204 21-47 (83)
310 1om2_A Protein (mitochondrial 29.6 47 0.0016 24.2 3.3 33 273-305 24-56 (95)
311 3re2_A Predicted protein; meni 29.1 2.2E+02 0.0075 26.6 8.2 62 385-448 254-322 (472)
312 2br9_A 14-3-3E, 14-3-3 protein 27.2 3.1E+02 0.011 23.8 12.8 167 238-414 8-201 (234)
313 2v6y_A AAA family ATPase, P60 27.0 84 0.0029 22.2 4.3 27 178-204 13-39 (83)
314 2qx5_A Nucleoporin NIC96; mRNA 24.8 5.8E+02 0.02 26.2 15.6 31 499-530 538-570 (661)
315 3bu8_A Telomeric repeat-bindin 24.2 1.1E+02 0.0037 26.2 4.9 42 504-545 121-162 (235)
316 1o9d_A 14-3-3-like protein C; 22.1 4.1E+02 0.014 23.5 15.1 162 239-413 12-205 (260)
317 2vkj_A TM1634; membrane protei 21.6 2.2E+02 0.0077 20.2 6.0 27 458-484 55-81 (106)
318 3snx_A SUSD homolog, putative 21.0 1.8E+02 0.0061 28.5 6.8 34 493-526 187-220 (460)
319 3u84_A Menin; MLL, JUND, ledgf 20.8 5.6E+02 0.019 24.5 9.3 62 385-448 276-344 (550)
320 2v6x_A Vacuolar protein sortin 20.6 2.3E+02 0.0077 19.9 8.4 26 465-490 22-47 (85)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-38 Score=318.35 Aligned_cols=373 Identities=17% Similarity=0.144 Sum_probs=335.8
Q ss_pred HHHHHhhcccchHHHHHHHhhcc---CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhC
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQT---GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKN 171 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~---~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 171 (558)
.+|..++..|+|++|...+++.. ......+...+.... ..+. +..+...+...+..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~--------------------~~~a~~~~~~a~~~ 62 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF-QCRR--------------------LDRSAHFSTLAIKQ 62 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTC--------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCC--------------------HHHHHHHHHHHHhc
Confidence 36999999999999999988762 122222222122111 1112 22333344555666
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
+|.++.+++.+|.++...|++++|+..|++++..+|.+..+|..+ |.++...|++
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------~~~~~~~g~~ 117 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL-------------------------AAALVAAGDM 117 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHSCS
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH-------------------------HHHHHHcCCH
Confidence 899999999999999999999999999999999999999999887 9999999999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFT 331 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~ 331 (558)
++|+..|+++++..|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|+++++...+++++.
T Consensus 118 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
.+|..+.++..+|.++...|++++|+..|++++.++|++. .++..+|.++...|++++|+..|++
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA---------------VVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999854 4688999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 491 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 491 (558)
+++.+|+++.++..+|.++.. .|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|+++++
T Consensus 263 al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------- 333 (388)
T 1w3b_A 263 AIELQPHFPDAYCNLANALKE--KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE------- 333 (388)
T ss_dssp HHHTCSSCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT-------
T ss_pred HHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHH
Q 048034 492 EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSM 537 (558)
Q Consensus 492 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 537 (558)
..|++..++..+|.++.+.|++++|+.+|+++++++|........+
T Consensus 334 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~l 379 (388)
T 1w3b_A 334 VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379 (388)
T ss_dssp SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhH
Confidence 6799999999999999999999999999999999998877665444
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-36 Score=302.56 Aligned_cols=332 Identities=18% Similarity=0.154 Sum_probs=314.9
Q ss_pred hhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchH
Q 048034 156 RELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHW 235 (558)
Q Consensus 156 ~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 235 (558)
+++..+...+.......|.++.++..+|.++...|++++|+..+.+++..+|.+..+|..+
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l------------------- 73 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL------------------- 73 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH-------------------
Confidence 3455556666677777899999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 236 MKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
|.++...|++++|+..|++++...|++..++..+|.++...|++++|+..|+++++.+|+....+..++.++..
T Consensus 74 ------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 74 ------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA 147 (388)
T ss_dssp ------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHT
T ss_pred ------HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQA 395 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~ 395 (558)
.|++++|...+.+++..+|.++.++..+|.++...|++++|+.+|+++++++|++. .++..+|.+
T Consensus 148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~ 212 (388)
T 1w3b_A 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL---------------DAYINLGNV 212 (388)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---------------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999855 468899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
+...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE--QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKS 536 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 536 (558)
+..|+++++ ..|.+..++..+|.++...|++++|+.+|+++++.+|++......
T Consensus 291 ~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T 1w3b_A 291 EDCYNTALR-------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp HHHHHHHHH-------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred HHHHHHHHh-------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999998 578889999999999999999999999999999999887765533
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-35 Score=308.97 Aligned_cols=416 Identities=14% Similarity=0.064 Sum_probs=280.6
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhcc--CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHh
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQT--GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTL 168 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~--~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (558)
...+.+|.+|+..|++++|..++++.. ..........+. +....+..++...+........ ... .....+...
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~~~~~~ 192 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF-CLVKLYDWQGALNLLGETNPFR---KDE-KNANKLLMQ 192 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH-HHHHTTCHHHHHHHHCSSCTTC--------------CC
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH-HHHHHhhHHHHHHHHhccCCcc---ccc-ccccccccc
Confidence 366789999999999999999999873 222221111122 1223444555555443211110 000 000011111
Q ss_pred hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH-----------------------
Q 048034 169 RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI----------------------- 225 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------------------- 225 (558)
....+.++.+|+.+|.++.+.|++++|+..|++++..+|.++.++..++.+......
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 122345688999999999999999999999999999999999999988765421100
Q ss_pred ----------------------hhcC-CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc
Q 048034 226 ----------------------LNSI-NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL 282 (558)
Q Consensus 226 ----------------------~~~l-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~ 282 (558)
+... ..+.+....+.++.++...|++++|+..|++++...|.+..++..++.++...
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 0000 11233333344455555555555555555555555555555555555555555
Q ss_pred ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHH
Q 048034 283 REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRR 362 (558)
Q Consensus 283 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 362 (558)
|++++|+..++++++..|.+...+..++.++...|++++|...+++++..+|.++.+|..+|.+|...|++++|+..|++
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHH
Q 048034 363 ALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAI 442 (558)
Q Consensus 363 al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~ 442 (558)
+++..|+ +..+|..+|.+|...|++++|+.+|+++++..|.++.+|..+|.++.. .|++++|+
T Consensus 433 ~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~ 495 (597)
T 2xpi_A 433 AARLFQG---------------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN--KSDMQTAI 495 (597)
T ss_dssp HHHTTTT---------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred HHHhCcc---------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hCCHHHHH
Confidence 5554444 566888999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhc------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHH
Q 048034 443 KCYRRAANC------NDSE-AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFED 515 (558)
Q Consensus 443 ~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 515 (558)
..|+++++. +|++ ..++..+|.++.+.|++++|+..|+++++ ..|.++.++..+|.+|...|++++
T Consensus 496 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL-------LSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHhCCHHH
Confidence 999999987 5654 78999999999999999999999999998 568889999999999999999999
Q ss_pred HHHHHHHHhccCCCcHHHHH
Q 048034 516 AEVYCTRLLDYTGPEKETAK 535 (558)
Q Consensus 516 A~~~~~~al~~~~~~~~~~~ 535 (558)
|.++|+++++++|.+.....
T Consensus 569 A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 569 AITHLHESLAISPNEIMASD 588 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHH
Confidence 99999999999987765543
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.4e-33 Score=278.23 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=293.3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
++..++.+|.++...|++++|+..|.+++..+|.+..++..+ |.++...|++++|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------a~~~~~~~~~~~A 56 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------ATVFLAMGKSKAA 56 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH-------------------------HHHHHHccCHHHH
Confidence 567899999999999999999999999999999999999887 9999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---CCcchHHHH------------HHHHHhcCCH
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDP---YRVEDMDMY------------SNVLYAKECF 319 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~------------~~~l~~~~~~ 319 (558)
+..++++++..|.+..++..+|.++...|++++|+..|+++++.+| .+...+..+ +.++...|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 57 LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 9999999999999999999999999999999999999999999999 888887777 6888999999
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 399 (558)
+++...+.+++..+|.++.++..+|.++...|++++|+..+++++...|.+. .+++.+|.++...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~ 201 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT---------------EAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999998855 4788999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH----HHHHHH
Q 048034 400 HMPFYALHYFRKSVFLQPNDSRLWI------------AMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI----ALNQLA 463 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~~~~~~------------~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la 463 (558)
|++++|+..|+++++..|++...+. .+|.++.. .|++++|+..|++++...|+++. ++..+|
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR--DGRYTDATSKYESVMKTEPSVAEYTVRSKERIC 279 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 9999999999999999999988765 34888999 99999999999999999999874 466799
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHH
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSM 537 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 537 (558)
.++...|++++|+..|+++++ ..|.++.++..+|.++...|++++|..+|+++++++|.+......+
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQ-------MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 999999999999999999999 5788899999999999999999999999999999998777655433
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.1e-33 Score=286.49 Aligned_cols=321 Identities=14% Similarity=0.116 Sum_probs=295.0
Q ss_pred HHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHH
Q 048034 165 LSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLAST 244 (558)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (558)
+.+.+..+|.++..++.+|..+...|++++|+..|.+++..+|.+..+|..+ |.+
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------~~~ 69 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR-------------------------ATV 69 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------HHH
Confidence 3444556789999999999999999999999999999999999999999887 999
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc---chHHHH------------
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV---EDMDMY------------ 309 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~------------ 309 (558)
+...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++.+|.+. ..+..+
T Consensus 70 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 70 FLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987 665555
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHH
Q 048034 310 SNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAW 389 (558)
Q Consensus 310 ~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 389 (558)
+.++...|++++|...+++++...|.++.++..+|.+|...|++++|+.+|+++++.+|++. .+|
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~ 214 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT---------------EAF 214 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH---------------HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHH
Confidence 55588899999999999999999999999999999999999999999999999999998854 578
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAM------------AQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l------------a~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 457 (558)
+.+|.+|...|++++|+.+|++++...|++...+..+ |.++.. .|++++|+.+|++++...|.++.
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR--DGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCcchH
Confidence 8999999999999999999999999999999988776 999999 99999999999999999999854
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHH
Q 048034 458 ----ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 458 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 533 (558)
++..+|.++...|++++|+..++++++ ..|.++.++..+|.++...|++++|+.+|+++++++|.+...
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQ-------MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 789999999999999999999999998 578889999999999999999999999999999999887665
Q ss_pred H
Q 048034 534 A 534 (558)
Q Consensus 534 ~ 534 (558)
.
T Consensus 366 ~ 366 (450)
T 2y4t_A 366 R 366 (450)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=292.51 Aligned_cols=398 Identities=11% Similarity=-0.015 Sum_probs=334.5
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhccC--ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHh
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQTG--KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTL 168 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~~--~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (558)
...+.+|..++..|+|++|+..++++.. +....+...+.... . .+.+..+...+.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~-~--------------------~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYV-S--------------------VGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--------------------HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHH-H--------------------HhhHHHHHHHHHHH
Confidence 3566889999999999999999998732 22222211111111 1 12234445556666
Q ss_pred hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH-----------------------
Q 048034 169 RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI----------------------- 225 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------------------- 225 (558)
+..+|.++.+++.+|.++...|++++|+..|.+++..+|.+......+.........
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 145 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST 145 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 667899999999999999999999999999999999999765543332221110000
Q ss_pred -------------------------------hhcCCCCchHHHHHHHHHHHHH---HhchHHHHHHHHHHHh-----h--
Q 048034 226 -------------------------------LNSINLNNHWMKDFFLASTYQE---LRMHNEALTKYEYLQG-----T-- 264 (558)
Q Consensus 226 -------------------------------~~~l~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~-----~-- 264 (558)
...+..|.+....+..|.++.. .|++++|+..+++++. .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 225 (514)
T 2gw1_A 146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 0001124445666677888776 8999999999999998 5
Q ss_pred c-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCCh
Q 048034 265 F-------GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRP 337 (558)
Q Consensus 265 ~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~ 337 (558)
. |....++..+|.++...|++++|+..|+++++.+|. ...+..++.++...|++.++...+.+++..+|.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 304 (514)
T 2gw1_A 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS 304 (514)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT
T ss_pred CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH
Confidence 3 445678899999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
.++..+|.++...|++++|+.+|++++..+|.+. .++..+|.++...|++++|+.+|++++...|
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI---------------FPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS---------------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999998854 4788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHh
Q 048034 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI------ALNQLAKLHHA---LGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~ 488 (558)
.++.++..+|.++.. .|++++|+..|++++...|.++. ++..+|.++.. .|++++|+..|+++++
T Consensus 370 ~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---- 443 (514)
T 2gw1_A 370 EAPEVPNFFAEILTD--KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---- 443 (514)
T ss_dssp TCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH----
T ss_pred cCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH----
Confidence 999999999999999 99999999999999999888755 99999999999 9999999999999998
Q ss_pred hhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 489 EEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 489 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
..|.+..++..+|.++...|++++|..+|+++++++|.+.+..
T Consensus 444 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 444 ---LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred ---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 5788899999999999999999999999999999998766654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.6e-32 Score=277.42 Aligned_cols=350 Identities=13% Similarity=0.059 Sum_probs=312.1
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhh
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRK 170 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (558)
...+.+|..++..|+|++|+.+++++. .
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l----------------------------------------------------~ 54 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAV----------------------------------------------------D 54 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------------------------------H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------------------------------------H
Confidence 356688999999999999999987640 0
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhc
Q 048034 171 NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRM 250 (558)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 250 (558)
..|.++.+++.+|.++...|++++|+..|.+++..+|.+..++..+ |.++...|+
T Consensus 55 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------~~~~~~~g~ 109 (450)
T 2y4t_A 55 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR-------------------------GHLLLKQGK 109 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTC
T ss_pred hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH-------------------------HHHHHHcCC
Confidence 0366788999999999999999999999999999999999999887 999999999
Q ss_pred hHHHHHHHHHHHhhcCCCh---HHHHHH------------HHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 251 HNEALTKYEYLQGTFGFSN---YLQAQI------------AKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 251 ~~~A~~~~~~~~~~~p~~~---~~~~~~------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
+++|+..|++++...|.+. .++..+ |.++...|++++|+..|+++++.+|.+...+..++.++..
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999887 665554 6779999999999999999999999999999999999999
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQA 395 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~ 395 (558)
.|++++|...+.+++..+|.++.++..+|.+|...|++++|+.+|++++.++|++...+..++.. .....+..+|.+
T Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~~ 266 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV---KKLNKLIESAEE 266 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH---HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766544311 122334566999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 471 (558)
+...|++++|+.+|++++...|+++. .+..+|.++.. .|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK--DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999854 78899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HhccCCC
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH------------CRAHN-----RFEDAEVYCTR-LLDYTGP 529 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~~~ 529 (558)
+++|+..|+++++ ..|++..++..++.+ |...| +.+++.+.|++ ++..+|+
T Consensus 345 ~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 345 YDEAIQDYETAQE-------HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHHHHHT-------TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998 789999999999954 44455 66788999987 7777664
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.2e-31 Score=279.80 Aligned_cols=396 Identities=12% Similarity=0.030 Sum_probs=308.7
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccC---ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHh
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTG---KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTL 168 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~---~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (558)
..+.+|..++..|+|++|+..++++.. .....+...+.... ..+ +...+...+.+.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g--------------------~~~~A~~~~~~a 85 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYI-STG--------------------DLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHH-HHT--------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcC--------------------CHHHHHHHHHHH
Confidence 456889999999999999999998732 12221111122111 111 233444556666
Q ss_pred hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhh----hcCHHHhhc----------CCCCch
Q 048034 169 RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSL----CTTIDILNS----------INLNNH 234 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~----~~~~~~~~~----------l~~~~~ 234 (558)
+..+|.++.+++.+|.++...|++++|+..|+ ++..+|.....+...... ......+.. ...|..
T Consensus 86 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 86 LEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 66789999999999999999999999999995 888888776654221000 000000000 000110
Q ss_pred HH-----------------------------HHHH--------HHHHHHHHhchHHHHHHHHHHHhhcCCChH-------
Q 048034 235 WM-----------------------------KDFF--------LASTYQELRMHNEALTKYEYLQGTFGFSNY------- 270 (558)
Q Consensus 235 ~~-----------------------------~~~~--------~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------- 270 (558)
.. .... .+......|++++|+..++++++..|+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH
Confidence 00 0000 133344557899999999999999999865
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc
Q 048034 271 LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK 350 (558)
Q Consensus 271 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~ 350 (558)
++..+|.++...|++++|+..|+++++.+|. ...+..++.++...|+++++...+.+++..+|.++.++..+|.++...
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048034 351 GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCY 430 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 430 (558)
|++++|+..|++++..+|++. .++..+|.++...|++++|+.+|++++...|+++.++..+|.++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENV---------------YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCS---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999998854 47889999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 431 ETEQLHMLEEAIKCYRRAANCNDSEAI------ALNQLAKLHHAL----------GRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 431 ~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
.. .|++++|+..|++++...|.+.. .+..+|.++... |++++|+.+|+++++ ..|
T Consensus 389 ~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------~~p 459 (537)
T 3fp2_A 389 TD--RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-------LDP 459 (537)
T ss_dssp HH--TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-------HCT
T ss_pred HH--hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-------hCC
Confidence 99 99999999999999998765543 467778999999 999999999999999 678
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 495 NMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
.+..++..+|.++...|++++|+.+|+++++++|...+..
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 8899999999999999999999999999999998776654
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-31 Score=282.14 Aligned_cols=367 Identities=12% Similarity=0.024 Sum_probs=314.0
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccC--C-hHHHHHHHHHHHHHchhhHHHH-----------------HHhhCCCCCC
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTG--K-KSVFLRCYALYLAGEKRKEEEM-----------------IELEGPLGKS 151 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~--~-~~~~l~~y~~yl~~~~~~~e~~-----------------~~~~~~~~~~ 151 (558)
..+.+|.+|...|++++|..++++... + ........+............. ..+...+...
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 455889999999999999999998732 1 1111111111000000000000 0000111222
Q ss_pred chhchhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCC
Q 048034 152 DAVNRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINL 231 (558)
Q Consensus 152 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~ 231 (558)
-...+.+..+...+.+.... +.++..++.+|.++.+.|++++|+..|++++..+|.+..+|..+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l--------------- 345 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH--------------- 345 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH---------------
T ss_pred HcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHH---------------
Confidence 23456667777777766554 67899999999999999999999999999999999998888877
Q ss_pred CchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHH
Q 048034 232 NNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSN 311 (558)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 311 (558)
+.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++.+|.+...+..++.
T Consensus 346 ----------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 346 ----------LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415 (597)
T ss_dssp ----------HHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----------HHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHH
Q 048034 312 VLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYG 391 (558)
Q Consensus 312 ~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 391 (558)
++...|++++|..++++++...|.++.++..+|.+|...|++++|+.+|+++++..|.+. .+|..
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~ 480 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP---------------LLLNE 480 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH---------------HHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------HHHHH
Confidence 999999999999999999999999999999999999999999999999999999998854 46889
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFL------QPND-SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~------~p~~-~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
+|.+|...|++++|+.+|+++++. +|++ ..+|..+|.++.. .|++++|+..|+++++.+|+++.++..+|.
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 558 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK--LKMYDAAIDALNQGLLLSTNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 999999999999999999999988 5664 7899999999999 999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR 508 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 508 (558)
+|...|++++|+.+|+++++ ..|+++.++..++.+|.
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLA-------ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHh
Confidence 99999999999999999999 67999999999998874
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4.7e-31 Score=260.07 Aligned_cols=318 Identities=13% Similarity=0.044 Sum_probs=289.3
Q ss_pred hHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHH
Q 048034 157 ELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWM 236 (558)
Q Consensus 157 ~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 236 (558)
++..+...+.+.+...|.++.+++.+|.++...|++++|+..|.+++..+|.+..++..+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------------------- 77 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR-------------------- 77 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH--------------------
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH--------------------
Confidence 344555556666677899999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhhcC---CChHHHHHH------------HHHHHHcccHHHHHHHHHHHHHcCCC
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGTFG---FSNYLQAQI------------AKAQYSLREFEQVEVVFEELLRNDPY 301 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~l~~~p~ 301 (558)
|.++...|++++|+..++++++..| .+..++..+ |.++...|++++|+..|+++++.+|.
T Consensus 78 -----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (359)
T 3ieg_A 78 -----GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW 152 (359)
T ss_dssp -----HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999 888887776 79999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhc
Q 048034 302 RVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEY 381 (558)
Q Consensus 302 ~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 381 (558)
+...+..++.++...|++++|...+.+++..+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~- 231 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV- 231 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988866544311
Q ss_pred cccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 048034 382 KSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR----LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 382 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 457 (558)
........+|.++...|++++|+..|++++...|+++. ++..+|.++.. .|++++|+..|+++++.+|+++.
T Consensus 232 --~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~ 307 (359)
T 3ieg_A 232 --KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK--DEKPVEAIRICSEVLQMEPDNVN 307 (359)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCcccHH
Confidence 01233556799999999999999999999999999874 46679999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
++..+|.++...|++++|+..|+++++ ..|++..++..++.+....+
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~-------~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQE-------HNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 78999999999988877654
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=260.09 Aligned_cols=297 Identities=12% Similarity=-0.008 Sum_probs=276.9
Q ss_pred hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH
Q 048034 169 RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL 248 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (558)
+...+.++.+++.+|..+...|++++|+..|++++..+|.+..++..+ +.++...
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~-------------------------~~~~~~~ 69 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH-------------------------IGTLVEL 69 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHH-------------------------HHHHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHH-------------------------HHHHHHh
Confidence 334477888999999999999999999999999999999998888776 8889999
Q ss_pred hchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 249 RMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR-EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
|++++|+..++++++..|.++.++..+|.++...| ++++|+..|+++++.+|.+...+..++.++...|++++|...+.
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALH 407 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 407 (558)
+++...|.+..++..+|.++...|++++|+.+|+++++.+|++. .++..+|.++...|++++|+.
T Consensus 150 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP---------------FVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcccHHHHHH
Confidence 99999999999999999999999999999999999999999854 478899999999999999999
Q ss_pred HHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 048034 408 YFRKSVFLQ---------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 478 (558)
Q Consensus 408 ~~~~a~~~~---------p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 478 (558)
+|++++... |..+.++..+|.++.. .|++++|+.+|+++++..|+++.++..+|.++...|++++|+.+
T Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK--LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhccccccccHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 999999876 6778899999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHH-HHcCCHH
Q 048034 479 YKKDLERMEAEEREGPNMVEALIFLATHC-RAHNRFE 514 (558)
Q Consensus 479 ~~~al~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 514 (558)
|+++++ ..|++..++..+|.++ ...|+.+
T Consensus 293 ~~~al~-------~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 293 FHTALG-------LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTTT-------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHc-------cCCCchHHHHHHHHHHHHHhCchh
Confidence 999998 7899999999999988 5566643
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-31 Score=274.89 Aligned_cols=246 Identities=13% Similarity=0.055 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHH---cccHHHHHHHHHHHHH-----c--C-------CCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhc
Q 048034 270 YLQAQIAKAQYS---LREFEQVEVVFEELLR-----N--D-------PYRVEDMDMYSNVLYAKECFSALSYLAHRVFTT 332 (558)
Q Consensus 270 ~~~~~~a~~~~~---~~~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~ 332 (558)
.++..+|.+++. .|++++|+..|+++++ . + |.+...+..++.++...|+++++...+.+++..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 187 DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 334444444443 5555555555555555 3 2 222344445555555555555555555555555
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
+|. +.++..+|.++...|++++|+.+|++++..+|. +..++..+|.++...|++++|+.+|+++
T Consensus 267 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 267 FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN---------------NSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---------------CTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555 555555555555555555555555555555554 5568899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhc
Q 048034 413 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEERE 492 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 492 (558)
+...|.++.++..+|.++.. .|++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++..+... .
T Consensus 331 ~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~ 407 (514)
T 2gw1_A 331 KELDPENIFPYIQLACLAYR--ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-G 407 (514)
T ss_dssp HHTCSSCSHHHHHHHHHTTT--TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-S
T ss_pred HHhChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-h
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999998543111 0
Q ss_pred CCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 493 GPNMVEALIFLATHCRA---HNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 493 ~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
......++..+|.++.. .|++++|+.+|++++..+|.+....
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 11114489999999999 9999999999999999988776654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.1e-31 Score=273.26 Aligned_cols=330 Identities=14% Similarity=0.078 Sum_probs=241.3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
.+..++.+|..+...|++++|+..|++++..+|.+..+|..+ |.++...|++++|
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~g~~~~A 78 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI-------------------------SACYISTGDLEKV 78 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHH-------------------------HHHHHHcCCHHHH
Confidence 345677777777777777777777777777777777777666 6667777777777
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchH----------------------------
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDM---------------------------- 306 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---------------------------- 306 (558)
+..|+++++.+|++..++..+|.++...|++++|+..|+ ++..+|......
T Consensus 79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~ 157 (537)
T 3fp2_A 79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 777777777777777777777777777777777776664 554444432211
Q ss_pred ----------------------------------------HHHHHH--------HHhcCCHhHHHHHHHHHhhcCCCChh
Q 048034 307 ----------------------------------------DMYSNV--------LYAKECFSALSYLAHRVFTTDKYRPE 338 (558)
Q Consensus 307 ----------------------------------------~~~~~~--------l~~~~~~~~a~~l~~~~~~~~~~~~~ 338 (558)
..+..+ ....+++.++...+++++..+|.++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~ 237 (537)
T 3fp2_A 158 SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237 (537)
T ss_dssp -CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH
T ss_pred ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch
Confidence 000000 01113555666666666666666543
Q ss_pred -------HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-------------------ccchHHHHHh
Q 048034 339 -------SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-------------------SIDYRAWYGL 392 (558)
Q Consensus 339 -------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------------------~~~~~~~~~l 392 (558)
+++.+|.++...|++++|+.+|++++..+|+ ..++..+|.++. |.+..++..+
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 316 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 3555566666666666666666666666666 666666665554 5677789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 472 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 472 (558)
|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|+..|++++...|.++.++..+|.++...|++
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK--QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCcHHHH
Q 048034 473 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH----------NRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 473 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
++|+..|+++++..+... ........+..+|.++... |++++|+.+|+++++.+|.+....
T Consensus 395 ~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQE-KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHcCCcch-hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999654332 1223344567789999999 999999999999999998877655
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=253.37 Aligned_cols=281 Identities=14% Similarity=0.057 Sum_probs=263.5
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC-CH
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE-CF 319 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~-~~ 319 (558)
+|..+...|++++|+..+++++..+|.+..++..++.++...|++++|+..++++++.+|.+...+..++.++...| ++
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 399 (558)
+++...+++++..+|.++.++..+|.++...|++++|+.+|+++++..|+.. .++..+|.+|...
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~ 172 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH---------------LPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS---------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH---------------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998854 4678899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHcC
Q 048034 400 HMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN---------DSEAIALNQLAKLHHALG 470 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g 470 (558)
|++++|+.+|++++...|.++.++..+|.++.. .|++++|+..+++++... |..+.++..+|.++...|
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ--NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999 999999999999999875 666789999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhc
Q 048034 471 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMAQ 545 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~~ 545 (558)
++++|+.+|+++++ ..|.+..++..+|.++...|++++|..+|+++++++|.+......+...+....
T Consensus 251 ~~~~A~~~~~~a~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 318 (330)
T 3hym_B 251 KYAEALDYHRQALV-------LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318 (330)
T ss_dssp CHHHHHHHHHHHHH-------HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHh-------hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHh
Confidence 99999999999998 568889999999999999999999999999999999888776655555554433
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.9e-30 Score=264.05 Aligned_cols=371 Identities=13% Similarity=0.027 Sum_probs=274.7
Q ss_pred hHH-HHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhh
Q 048034 92 DFY-LLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRK 170 (558)
Q Consensus 92 ~~~-~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 170 (558)
..| .||.+++..|+|++|+..++++. .. ... . ....
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl-------~~----~~~----------~----------------------~~~~ 88 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAE-------EL----IQQ----------E----------------------HADQ 88 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-------HH----HHH----------H----------------------SGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-------HH----HHh----------c----------------------Cccc
Confidence 344 78999999999999999988751 00 000 0 0011
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCC--------CCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHH
Q 048034 171 NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYP--------WNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLA 242 (558)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 242 (558)
..+.....+..+|.+|..+|++++|+.+|.+++.+.+ ....++.. .|
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~-------------------------~g 143 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE-------------------------EG 143 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH-------------------------HH
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH-------------------------HH
Confidence 2355667889999999999999999999999988643 22333333 36
Q ss_pred HHHHHH--hchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc---ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc-
Q 048034 243 STYQEL--RMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL---REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK- 316 (558)
Q Consensus 243 ~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~- 316 (558)
.++... +++++|+..|+++++.+|+++.++..++.+++.. +++++|+..|+++++++|.+..+...++..+...
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~ 223 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMR 223 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Confidence 666554 5799999999999999999999999999887654 5678899999999999999999888887766554
Q ss_pred ---CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc----ccchHHH
Q 048034 317 ---ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK----SIDYRAW 389 (558)
Q Consensus 317 ---~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~~ 389 (558)
++..++...+++++..+|..+.++..+|.+|...|++++|+..|+++++.+|++..++..+|.+|. .......
T Consensus 224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 678899999999999999999999999999999999999999999999999998887766664432 0000011
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI---ALNQLAKLH 466 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~ 466 (558)
...+......+.++.|+..|++++.++|.+..++..+|.++.. .|++++|+.+|++++...+++.. ++..+|.+.
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL--ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH--TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH--hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 1122222334557889999999999999999999999999999 99999999999999999887654 456677654
Q ss_pred -HHcCCHHHHHHHHHHHHHHH-----------------HhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 467 -HALGRDEEAAFYYKKDLERM-----------------EAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 467 -~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
...|++++|+..|+++++.. ......+|.++.++..+|.+|...|++++|+++|+++++++|
T Consensus 382 ~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 57899999999999988632 122235688889999999999999999999999999999876
Q ss_pred CcHH
Q 048034 529 PEKE 532 (558)
Q Consensus 529 ~~~~ 532 (558)
..+.
T Consensus 462 ~~p~ 465 (472)
T 4g1t_A 462 LIPS 465 (472)
T ss_dssp ----
T ss_pred CCCc
Confidence 5554
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.8e-30 Score=257.25 Aligned_cols=291 Identities=17% Similarity=0.103 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHH
Q 048034 177 FILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALT 256 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 256 (558)
..++.+|.++...|++++|+..|.+++..+|.+..+|..+ |.++...|++++|+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL-------------------------GTTQAENEQELLAIS 119 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH-------------------------HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHHHHHCcCHHHHHH
Confidence 3466666666666666666666666666666666666555 666666666666666
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC
Q 048034 257 KYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYR 336 (558)
Q Consensus 257 ~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~ 336 (558)
.++++++..|.++.++..+|.++...|++++|+..|++++..+|.+......++.+. .....
T Consensus 120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 181 (368)
T 1fch_A 120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA------------------GGAGL 181 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh------------------hhhcc
Confidence 666666666666666666666666666666666666666666666544332221110 00001
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
...+..+|.++ ..|++++|+.+|++++..+|+.. +..++..+|.++...|++++|+.+|++++...
T Consensus 182 ~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 182 GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI-------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp ----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 11223567776 89999999999999999998821 23578899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh----hc
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE----RE 492 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~ 492 (558)
|+++.++..+|.++.. .|++++|+..|++++...|.++.++..+|.++...|++++|+.+|+++++..+... ..
T Consensus 248 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 325 (368)
T 1fch_A 248 PNDYLLWNKLGATLAN--GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 325 (368)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred cCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccc
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999654321 11
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 493 GPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 493 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.+....++..+|.++...|++++|..+++++++.
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 2334789999999999999999999999877653
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.2e-29 Score=249.50 Aligned_cols=260 Identities=19% Similarity=0.192 Sum_probs=233.5
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCch
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNH 234 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~ 234 (558)
.+.+..+...+.+.+...|.++.+++.+|.++...|++++|+..|.+++..+|.+..++..+
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l------------------ 138 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL------------------ 138 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------------
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHH------------------
Confidence 45677888888888889999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHH----------------HHHHHHHHcccHHHHHHHHHHHHHc
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQA----------------QIAKAQYSLREFEQVEVVFEELLRN 298 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----------------~~a~~~~~~~~~~~A~~~~~~~l~~ 298 (558)
|.++...|++++|+..+++++...|.+...+. .++.++ ..|++++|+..|+++++.
T Consensus 139 -------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 139 -------AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877664 345554 778888888888888777
Q ss_pred CCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhc
Q 048034 299 DPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMG 378 (558)
Q Consensus 299 ~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 378 (558)
+|... .+.++..+|.++...|++++|+.+|++++.++|++.
T Consensus 211 ~p~~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------- 251 (368)
T 1fch_A 211 DPTSI--------------------------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY------- 251 (368)
T ss_dssp STTSC--------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-------
T ss_pred CcCcc--------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH-------
Confidence 76621 367888999999999999999999999999998854
Q ss_pred hhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---
Q 048034 379 HEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--- 455 (558)
Q Consensus 379 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~--- 455 (558)
.+++.+|.++...|++++|+.+|++++.+.|+++.++..+|.++.. .|++++|+..|++++.+.|++
T Consensus 252 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 252 --------LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN--LGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHTC---
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCCCCCCc
Confidence 4788999999999999999999999999999999999999999999 999999999999999998887
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 456 --------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 456 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
..++..+|.++..+|++++|..+++++++.+.+.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence 8899999999999999999999999988866543
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.7e-28 Score=249.30 Aligned_cols=327 Identities=14% Similarity=0.116 Sum_probs=267.9
Q ss_pred HHHHHHHHHHhhhC--CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhh---------CCCCHHHHHHHHhhhcCHHHh
Q 048034 158 LISLERELSTLRKN--GTMDPFILYLYGLVLKDKGSENLARTVLVESVNS---------YPWNWNSWLELQSLCTTIDIL 226 (558)
Q Consensus 158 l~~~~~~l~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~~~~ 226 (558)
+..+...+...... .+..+.++..+|.++..+|++++|++.|++++++ +|....+|..
T Consensus 31 l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~n----------- 99 (472)
T 4g1t_A 31 LDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGN----------- 99 (472)
T ss_dssp HHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHH-----------
Confidence 44444444443332 2334678889999999999999999999999876 3444444444
Q ss_pred hcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhc--------CCChHHHHHHHHHHHHc--ccHHHHHHHHHHHH
Q 048034 227 NSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTF--------GFSNYLQAQIAKAQYSL--REFEQVEVVFEELL 296 (558)
Q Consensus 227 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l 296 (558)
+|.+|..+|++++|+..+++++++. +..+.++..+|.++... ++|++|+.+|++++
T Consensus 100 --------------la~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 100 --------------YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp --------------HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 4999999999999999999998753 34577888888777664 57999999999999
Q ss_pred HcCCCCcchHHHHHHHHHhc---CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHccCcC
Q 048034 297 RNDPYRVEDMDMYSNVLYAK---ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLNKN 369 (558)
Q Consensus 297 ~~~p~~~~~~~~~~~~l~~~---~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~ 369 (558)
+.+|+++++...++.+++.. ++..++...+++++..+|.++.++..+|..+.. .|++++|+.+|++++..+|.
T Consensus 166 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~ 245 (472)
T 4g1t_A 166 EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245 (472)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS
T ss_pred HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc
Confidence 99999999999998886654 677889999999999999999999998877654 46788999999999999998
Q ss_pred CHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----------------
Q 048034 370 YLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYET----------------- 432 (558)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----------------- 432 (558)
.. .++..+|.+|...|++++|+..|+++++..|+++.++..+|.+|..
T Consensus 246 ~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 246 VT---------------DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp CH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HH---------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55 4688999999999999999999999999999999999999999864
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH---HHHHHHHHH-HH
Q 048034 433 EQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV---EALIFLATH-CR 508 (558)
Q Consensus 433 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~la~~-~~ 508 (558)
...+.+++|+..|++++..+|.+..++..+|.++...|++++|+.+|+++++ ..+... .++..+|.+ +.
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-------~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS-------KELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-------SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHH
Confidence 0023478899999999999999999999999999999999999999999998 444433 345666654 45
Q ss_pred HcCCHHHHHHHHHHHhccCCCcH
Q 048034 509 AHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 509 ~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
..|++++|+.+|+++++++|...
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCH
T ss_pred HCCCHHHHHHHHHHHHhcCcccH
Confidence 78999999999999999876544
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.1e-29 Score=251.49 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=244.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
+...++.+|..+...|++++|+..|++++..+|.+..+|..+ |.++...|++++|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------g~~~~~~g~~~~A 118 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFL-------------------------GITQAENENEQAA 118 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHH-------------------------HHHHHHCCCHHHH
Confidence 445599999999999999999999999999999999999887 9999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH----------HHHHHhcCCHhHHHH
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY----------SNVLYAKECFSALSY 324 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~----------~~~l~~~~~~~~a~~ 324 (558)
+..|+++++..|.+..++..+|.++...|++++|+..|+++++.+|.+...+..+ +.++...|++++|..
T Consensus 119 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (365)
T 4eqf_A 119 IVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999877776655 888999999999999
Q ss_pred HHHHHhhcCCC--ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCH
Q 048034 325 LAHRVFTTDKY--RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402 (558)
Q Consensus 325 l~~~~~~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 402 (558)
.+++++..+|. ++.+++.+|.++...|++++|+.+|+++++++|++. .+|..+|.+|...|++
T Consensus 199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY---------------SLWNRLGATLANGDRS 263 (365)
T ss_dssp HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCH
Confidence 99999999999 899999999999999999999999999999998854 4788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHcC
Q 048034 403 FYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALNQLAKLHHALG 470 (558)
Q Consensus 403 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g 470 (558)
++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|++++.+.|+ +..+|..++.++..+|
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCIN--LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999 99999999999999998876 3568999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 048034 471 RDEEAAFYYKKDLERM 486 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~ 486 (558)
+.+.|....++.+..+
T Consensus 342 ~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 342 QPELFQAANLGDLDVL 357 (365)
T ss_dssp CHHHHHHHHTTCCGGG
T ss_pred cHHHHHHHHHhhHHHH
Confidence 9999988887765543
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=1.3e-28 Score=239.54 Aligned_cols=273 Identities=16% Similarity=0.157 Sum_probs=253.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
++..++.+|..+...|++++|+..|++++..+|.+..+|..+ |.++...|++++|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------------------------~~~~~~~~~~~~A 74 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL-------------------------GLTQAENEKDGLA 74 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHHHHHcCCHHHH
Confidence 456789999999999999999999999999999999999887 9999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH--------------HH-HHHhcCCH
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY--------------SN-VLYAKECF 319 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~--------------~~-~l~~~~~~ 319 (558)
+..++++++..|.+..++..+|.++...|++++|+..|+++++.+|.+......+ +. ++...|++
T Consensus 75 ~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 75 IIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccH
Confidence 9999999999999999999999999999999999999999999999998888776 55 57788999
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 399 (558)
+++...+++++...|.++.++..+|.++...|++++|+.++++++..+|++. .++..+|.++...
T Consensus 155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA---------------QLWNKLGATLANG 219 (327)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999998854 4788999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHH
Q 048034 400 HMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------------EAIALNQLAKLHH 467 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~ 467 (558)
|++++|+.+|+++++..|+++.++..+|.++.. .|++++|+..|++++...|. ++.++..+|.++.
T Consensus 220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSN--MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999 7899999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHhh
Q 048034 468 ALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 468 ~~g~~~~A~~~~~~al~~~~~~ 489 (558)
..|++++|...++++++.++..
T Consensus 298 ~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 298 VMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HTTCHHHHHHHTTCCSHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999999998876544
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=9.4e-29 Score=244.87 Aligned_cols=270 Identities=13% Similarity=-0.012 Sum_probs=239.4
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 320 (558)
+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..++.++...|+++
T Consensus 71 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 150 (365)
T 4eqf_A 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ 150 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHH----------HHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 321 ALSYLAHRVFTTDKYRPESCCII----------GNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~l----------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
+|...+++++..+|..+..+..+ |.++...|++++|+.+|++++.++|+.. ++.+++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------------~~~~~~ 217 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI-------------DPDLQT 217 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-------------CHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-------------CHHHHH
Confidence 99999999999999877776655 9999999999999999999999998821 335788
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 470 (558)
.+|.+|...|++++|+.+|+++++..|+++.+|..+|.++.. .|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN--GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 471 RDEEAAFYYKKDLERMEAEERE-----GPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
++++|+.+|+++++..+..... ......++..++.++...|+.+.|.....+.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999976543211 111367889999999999999999988877544
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=2.8e-28 Score=240.21 Aligned_cols=258 Identities=10% Similarity=0.011 Sum_probs=236.0
Q ss_pred hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH
Q 048034 169 RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL 248 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (558)
+...|.++.+++.+|.++...|++++|+..|.+++.++|.+..+|..+ |.++...
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~-------------------------g~~l~~~ 144 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFR-------------------------RVLLKSL 144 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHT
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHH-------------------------HHHHHHc
Confidence 344677888999999999999999999999999999999999999887 9999999
Q ss_pred hc-hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 249 RM-HNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 249 ~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
|+ +++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++++|.+
T Consensus 145 g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------------------------- 199 (382)
T 2h6f_A 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------------------------- 199 (382)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------------------------
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------------------------
Confidence 97 9999999999999999999999999999999999999999999999988876
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH-cCCHHHH-
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM-MHMPFYA- 405 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A- 405 (558)
+.+|+.+|.++...|++++|+.+|+++++++|++.. +|+.+|.++.. .|.+++|
T Consensus 200 ---------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~---------------a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 200 ---------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS---------------VWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp ---------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCSCSHHH
T ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhcCcchHHH
Confidence 678889999999999999999999999999999654 68889999999 5555788
Q ss_pred ----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------C
Q 048034 406 ----LHYFRKSVFLQPNDSRLWIAMAQCYETEQLH--MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG--------R 471 (558)
Q Consensus 406 ----~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------~ 471 (558)
+.+|++++.++|++..+|+++|.++.. .| ++++|+..++++ +.+|+++.++..+|.+|.++| +
T Consensus 256 ~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~--~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT--TCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHc--cCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 599999999999999999999999998 88 699999999998 999999999999999999985 2
Q ss_pred -HHHHHHHHHHH-HHHHHhhhhcCCChHHHHHHHHHHHHHc
Q 048034 472 -DEEAAFYYKKD-LERMEAEEREGPNMVEALIFLATHCRAH 510 (558)
Q Consensus 472 -~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~la~~~~~~ 510 (558)
+++|+.+|+++ ++ .+|.....|..++..+..+
T Consensus 333 ~~~~A~~~~~~l~~~-------~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKE-------KDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHT-------TCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHHH
Confidence 58999999998 77 7899999999998887654
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=3.4e-28 Score=239.63 Aligned_cols=259 Identities=9% Similarity=0.004 Sum_probs=234.5
Q ss_pred HHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 048034 201 ESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQY 280 (558)
Q Consensus 201 ~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~ 280 (558)
.++..+|.+..+|..+ |.++...|++++|+..+++++..+|++..++..+|.++.
T Consensus 88 ~ai~~~p~~~~a~~~l-------------------------g~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~ 142 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYF-------------------------RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK 142 (382)
T ss_dssp SEECCCHHHHHHHHHH-------------------------HHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhhhCChhhHHHHHHH-------------------------HHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH
Confidence 4567788888888776 899999999999999999999999999999999999999
Q ss_pred Hccc-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHH
Q 048034 281 SLRE-FEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVY 359 (558)
Q Consensus 281 ~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 359 (558)
..|+ +++|+..|+++++++|.+ +.+|+.+|.++...|++++|+.+
T Consensus 143 ~~g~d~~eAl~~~~~al~l~P~~----------------------------------~~a~~~~g~~~~~~g~~~eAl~~ 188 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAIIEEQPKN----------------------------------YQVWHHRRVLVEWLRDPSQELEF 188 (382)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTC----------------------------------HHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HcccCHHHHHHHHHHHHHHCCCC----------------------------------HHHHHHHHHHHHHccCHHHHHHH
Confidence 9997 999999999999988876 67889999999999999999999
Q ss_pred HHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCH-
Q 048034 360 FRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML- 438 (558)
Q Consensus 360 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~- 438 (558)
|++++.++|++. .+|+.+|.++..+|++++|+.+|+++++++|++..+|+++|.++.. ++..
T Consensus 189 ~~kal~ldP~~~---------------~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~--l~~~~ 251 (382)
T 2h6f_A 189 IADILNQDAKNY---------------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN--TTGYN 251 (382)
T ss_dssp HHHHHHHCTTCH---------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCSC
T ss_pred HHHHHHhCccCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCcc
Confidence 999999999955 5788999999999999999999999999999999999999999998 7766
Q ss_pred HHH-----HHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 439 EEA-----IKCYRRAANCNDSEAIALNQLAKLHHALG--RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 439 ~~A-----~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
++| +.+|++++.++|++..+|+.+|.++...| ++++|+..++++ + ..|++..++..+|.+|.++|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-------~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-------PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-------TTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-------cCCCCHHHHHHHHHHHHHHh
Confidence 788 59999999999999999999999999988 689999988776 4 67899999999999999985
Q ss_pred --------C-HHHHHHHHHHH-hccCCCcHHHHHHHHHHHHH
Q 048034 512 --------R-FEDAEVYCTRL-LDYTGPEKETAKSMLRGMRM 543 (558)
Q Consensus 512 --------~-~~~A~~~~~~a-l~~~~~~~~~~~~ll~~~~~ 543 (558)
+ +++|+++|+++ ++++|.....+..+...+..
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 59999999999 99999888888666555543
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=1.5e-27 Score=231.86 Aligned_cols=265 Identities=14% Similarity=0.082 Sum_probs=246.1
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
+.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++.+|.+...+..++.++...|+
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHH--------------HH-HHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccc
Q 048034 319 FSALSYLAHRVFTTDKYRPESCCII--------------GN-YYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKS 383 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~~~~~~~~l--------------g~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 383 (558)
++++...+.+++..+|.....+..+ |. ++...|++++|+.+++++++..|.+.
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------ 172 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA------------ 172 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH------------
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH------------
Confidence 9999999999999999999888887 77 78899999999999999999998844
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
.++..+|.++...|++++|+.++++++...|+++.++..+|.++.. .|++++|+..|++++...|.++.++..+|
T Consensus 173 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 247 (327)
T 3cv0_A 173 ---QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN--GNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPN------------MVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.++...|++++|+..|+++++.. |. ...++..+|.++...|++++|...++++++..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQ-------VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-------TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-------CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999843 44 78899999999999999999999999887653
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=8.8e-24 Score=217.72 Aligned_cols=353 Identities=13% Similarity=0.075 Sum_probs=296.2
Q ss_pred hhHHHHHHHhhc----ccchHHHHHHHhhccC--ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHH
Q 048034 91 SDFYLLAKSYFD----CREYRRAAHVLRDQTG--KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERE 164 (558)
Q Consensus 91 ~~~~~la~~~~~----~~~~~rA~~~l~~~~~--~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (558)
...+.||..|+. .+++++|+..++++.. .......+-..|..|. .+..+...+...
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~------------------g~~~~~~~A~~~ 101 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGE------------------GVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS------------------SSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC------------------CCCCCHHHHHHH
Confidence 467899999999 8999999999998732 2222222212233221 112233444444
Q ss_pred HHHhhhCCCCchHHHHHHHHHHHh----cCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHH
Q 048034 165 LSTLRKNGTMDPFILYLYGLVLKD----KGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFF 240 (558)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 240 (558)
+.+... ..++.+++.+|.+|.. .+++++|+.+|+++... .+..++..|
T Consensus 102 ~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L------------------------ 153 (490)
T 2xm6_A 102 YKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM------------------------ 153 (490)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH------------------------
T ss_pred HHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH------------------------
Confidence 555444 3588999999999998 89999999999999875 567777776
Q ss_pred HHHHHHH----HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 048034 241 LASTYQE----LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYS----LREFEQVEVVFEELLRNDPYRVEDMDMYSNV 312 (558)
Q Consensus 241 ~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (558)
|.+|.. .+++++|+..|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. .++.+...++.+
T Consensus 154 -g~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 228 (490)
T 2xm6_A 154 -GDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADM 228 (490)
T ss_dssp -HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred -HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 888887 78999999999999876 578999999999999 89999999999999875 467888999999
Q ss_pred HHh----cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHccCcCCHHHHHHhchhcccc
Q 048034 313 LYA----KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSI 384 (558)
Q Consensus 313 l~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 384 (558)
+.. .++..++..+++++... .++.+++.+|.+|.. .+++++|+.+|+++.+..
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------------- 289 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------------- 289 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----------------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----------------
Confidence 986 79999999999998775 568899999999998 999999999999998753
Q ss_pred chHHHHHhHHHHHHc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcH
Q 048034 385 DYRAWYGLGQAYEMM-----HMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---MLEEAIKCYRRAANCNDSEA 456 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~-----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~---~~~~A~~~~~~al~~~~~~~ 456 (558)
+..+++.+|.+|... +++++|+.+|+++.+. .++.+++.+|.+|.. .| ++++|+.+|+++++. .++
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~a~~~--~~~ 363 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR--LGSEEEHKKAVEWFRKAAAK--GEK 363 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHT--TCH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh--CCCcccHHHHHHHHHHHHHC--CCH
Confidence 335788999999998 9999999999999986 578899999999998 77 899999999999987 578
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 048034 457 IALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 457 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 528 (558)
.+++.+|.+|.. .+++++|+.+|+++++ ..++.+++.+|.+|.. .+++++|..+|+++++.+|
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~---------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE---------QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999999999 8999999999999998 3458899999999999 8999999999999999874
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=5.7e-26 Score=214.85 Aligned_cols=247 Identities=15% Similarity=0.151 Sum_probs=197.4
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH
Q 048034 240 FLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF 319 (558)
Q Consensus 240 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 319 (558)
..|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++ .|.+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~--------------- 71 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK--------------- 71 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT---------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh---------------
Confidence 3456666666666666666666666666666666666666666666666666666665 332211
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 399 (558)
..+.++..+|.++...|++++|+.+|+++++.+|.+. .+|..+|.+|...
T Consensus 72 ---------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 72 ---------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---------------DMYGQIGSYFYNK 121 (272)
T ss_dssp ---------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHT
T ss_pred ---------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHc
Confidence 1245689999999999999999999999999999854 4788999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHH
Q 048034 400 HMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR---DEEAA 476 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~ 476 (558)
|++++|+.+|++++..+|.++.++..+|..... .+++++|+.+|+++++.+|++..++..+|.++...|+ +++|+
T Consensus 122 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY--NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 999999999999999999999999999944444 5799999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhhhc-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 477 FYYKKDLERMEAEERE-GPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 477 ~~~~~al~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
..|+++++........ ......++..+|.++...|++++|+.+|+++++++|.+....
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 9999999976432211 111347889999999999999999999999999998776544
No 27
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=233.18 Aligned_cols=311 Identities=17% Similarity=0.110 Sum_probs=261.7
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
......++.+|.++...|++++|+..|++++...|.+......+ .+.+|.++...|+++
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------------~~~l~~~~~~~g~~~ 64 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAI---------------------YSQLGNAYFYLHDYA 64 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHH---------------------HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHH---------------------HHHHHHHHHHhcCHH
Confidence 34567889999999999999999999999999999886533221 223499999999999
Q ss_pred HHHHHHHHHHhh------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc------chHHHHHHHHHhcCC--
Q 048034 253 EALTKYEYLQGT------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV------EDMDMYSNVLYAKEC-- 318 (558)
Q Consensus 253 ~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~~~~~l~~~~~-- 318 (558)
+|+..+++++.. .|....++..+|.++...|++++|+..++++++..|... ..+..++.++...|+
T Consensus 65 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 999999999875 334466888999999999999999999999999876543 377888999999999
Q ss_pred ------------------HhHHHHHHHHHhhc------CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHH
Q 048034 319 ------------------FSALSYLAHRVFTT------DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAW 374 (558)
Q Consensus 319 ------------------~~~a~~l~~~~~~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 374 (558)
+.++...+.+++.. .+....++..+|.++...|++++|+.+|++++.+.+......
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999988776 344566899999999999999999999999999876543221
Q ss_pred HHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 375 TLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 375 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
....++..+|.+|...|++++|+.+|++++.+.|.. ..++..+|.++.. .|++++|+.+|+++
T Consensus 225 ---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 225 ---------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL--LQDYEKAIDYHLKH 293 (406)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH--hCcHHHHHHHHHHH
Confidence 123578999999999999999999999999887655 6789999999999 99999999999999
Q ss_pred HhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHH
Q 048034 449 ANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDA 516 (558)
Q Consensus 449 l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 516 (558)
+.+.+.. ..++..+|.++...|++++|+.+|+++++..+... ..+....++..+|.++...|+...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG-DKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHhhHhHHH
Confidence 9875433 56899999999999999999999999999765442 3356678899999999999987443
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=210.74 Aligned_cols=241 Identities=13% Similarity=-0.015 Sum_probs=187.2
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
..+..++.+|.++...|++++|+.+|.+++..+ .+..++..+ |.++...|++++
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~-------------------------~~~~~~~~~~~~ 56 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNR-------------------------AAAEYEKGEYET 56 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHH-------------------------HHHHHHcccHHH
Confidence 356789999999999999999999999999999 888888777 999999999999
Q ss_pred HHHHHHHHHhhcCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 048034 254 ALTKYEYLQGTFGFS-------NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLA 326 (558)
Q Consensus 254 A~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~ 326 (558)
|+..++++++..|.. +.++..+|.++...|++++|+..|+++++.+|. +.++...++..++...+
T Consensus 57 A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKA 128 (258)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHH
Confidence 999999999988876 689999999999999999999999999999886 34555566666666666
Q ss_pred HHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHH
Q 048034 327 HRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
.+++..+|..+.++..+|.++...|++++|+.+|++++..+|.+. .+++.+|.++...|++++|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHhCCHHHHH
Confidence 666666666666667777777777777777777777766666633 35666666666677777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHH
Q 048034 407 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN------DSEAIALNQLAKL 465 (558)
Q Consensus 407 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~ 465 (558)
.+|+++++.+|+++.++..+|.++.. .|++++|+..|+++++++ |.+..++..++.+
T Consensus 194 ~~~~~al~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 194 ADCNKAIEKDPNFVRAYIRKATAQIA--VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 77777776666666666677777766 677777777777766666 6666555555443
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=5.3e-26 Score=207.28 Aligned_cols=201 Identities=18% Similarity=0.221 Sum_probs=168.7
Q ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 048034 266 GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGN 345 (558)
Q Consensus 266 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~ 345 (558)
|.++.++..+|.++...|++++|+..|+++++.+|.+ +.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------~~a~~~lg~ 47 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD----------------------------------PEALYWLAR 47 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC----------------------------------HHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHH
Confidence 5677778888888888888888888888887777665 678888999
Q ss_pred HHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc-----------CCHHHHHHHHHHHHh
Q 048034 346 YYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM-----------HMPFYALHYFRKSVF 414 (558)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~a~~ 414 (558)
++...|++++|+..|+++++++|++.. +++.+|.++... |++++|+..|+++++
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLG---------------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 999999999999999999999998554 678888889888 999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
++|+++.+|..+|.++.. .|++++|+..|+++++++ +++.+++.+|.++...|++++|+..|+++++ ..|
T Consensus 113 ~~P~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~P 182 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYAL--LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALE-------QAP 182 (217)
T ss_dssp HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HST
T ss_pred hCcccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCC
Confidence 999999999999999999 999999999999999999 9999999999999999999999999999999 679
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 495 NMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
+++.++..+|.++...|++++|+..|+++..
T Consensus 183 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 183 KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp TCHHHHHHHHHHHTC----------------
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999999998754
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.1e-25 Score=205.18 Aligned_cols=210 Identities=19% Similarity=0.121 Sum_probs=126.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
|.++.+++.+|.++...|++++|+..|++++..+|.+..+|..+ |.++...|+++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------------------------g~~~~~~g~~~ 56 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWL-------------------------ARTQLKLGLVN 56 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH-------------------------HHHHHHTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------------------------HHHHHHcCCHH
Confidence 56788899999999999999999999999999999999888887 88889999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhc
Q 048034 253 EALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTT 332 (558)
Q Consensus 253 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~ 332 (558)
+|+..|+++++.+|+++.++..+|.++...+.. .+.
T Consensus 57 ~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-------------~~~------------------------------- 92 (217)
T 2pl2_A 57 PALENGKTLVARTPRYLGGYMVLSEAYVALYRQ-------------AED------------------------------- 92 (217)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT-------------CSS-------------------------------
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh-------------hhh-------------------------------
Confidence 999999999999999999998898888877100 000
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
.....|++++|+..|+++++++|++. .+|+.+|.++...|++++|+..|+++
T Consensus 93 -------------~~~~~g~~~~A~~~~~~al~~~P~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 93 -------------RERGKGYLEQALSVLKDAERVNPRYA---------------PLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------hcccccCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 01123444455555555555544422 23444455555555555555555555
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 413 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKD 482 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 482 (558)
++++ +++.++..+|.++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 145 l~~~-~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 145 LALE-DTPEIRSALAELYLS--MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHC-CCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred Hhcc-cchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555 445555555555555 555555555555555555555555555555555555555555555443
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=9e-26 Score=213.45 Aligned_cols=252 Identities=13% Similarity=0.025 Sum_probs=213.5
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
++..++.+|.++...|++++|+..|.++++.+|.+..++..+ |.++...|++++|
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------------------------~~~~~~~~~~~~A 56 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRR-------------------------AVCYYELAKYDLA 56 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHH-------------------------HHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-------------------------HHHHHHHhhHHHH
Confidence 456789999999999999999999999999999999888887 9999999999999
Q ss_pred HHHHHHHHhhcCCC----hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHh
Q 048034 255 LTKYEYLQGTFGFS----NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVF 330 (558)
Q Consensus 255 ~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~ 330 (558)
+..++++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.+...+..++.++...|++++|...+++++
T Consensus 57 ~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 57 QKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999 4443 34589999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC---HHHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM---PFYALH 407 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~---~~~A~~ 407 (558)
..+|.++.+++.+|...+..+++++|+.+|+++++++|++. .+++.+|.++...|+ +++|+.
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY---------------IGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccch---------------HHHHHHHHHHHHcCcchhhHHHHH
Confidence 99999999999999444455699999999999999888854 467788888888888 888999
Q ss_pred HHHHHHhcC---CC-----CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 408 YFRKSVFLQ---PN-----DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 408 ~~~~a~~~~---p~-----~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
.|+++++.. |+ ...++..+|.+|.. .|++++|+.+|+++++++|+++.++-.++.+....
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI--NRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 999988775 44 23678888999988 99999999999999999999988888877766544
No 32
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=4.3e-26 Score=229.49 Aligned_cols=295 Identities=16% Similarity=0.092 Sum_probs=244.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
.....++.+|..+...|++++|+..|++++...|.+....... .+.+|.++...|++++
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------------~~~lg~~~~~~g~~~~ 104 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAI---------------------YSQLGNAYFYLGDYNK 104 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHH---------------------HHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHH---------------------HHHHHHHHHHCCCHHH
Confidence 3456788999999999999999999999999999987532221 2234999999999999
Q ss_pred HHHHHHHHHhh------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 254 ALTKYEYLQGT------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 254 A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
|+..+++++.. .|....++..+|.++...|++++|+.+|+++++..+...
T Consensus 105 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------ 160 (411)
T 4a1s_A 105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG------------------------ 160 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh------------------------
Confidence 99999999986 456677899999999999999999999999987533211
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCC-----------------hHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQ-----------------HEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~-----------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
..+....++..+|.+|...|+ +++|+.+|++++.+.+..... +....++.
T Consensus 161 ----~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~ 227 (411)
T 4a1s_A 161 ----DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR---------GAQGRACG 227 (411)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHH
Confidence 112235688899999999999 999999999998865321110 12345789
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHH
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPNDS------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIA 458 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~ 458 (558)
.+|.+|...|++++|+.+|++++.+.+... .++..+|.++.. .|++++|+.+|++++...+.. ..+
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF--LGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999998876432 388999999999 999999999999999886643 568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 529 (558)
+..+|.++...|++++|+.+++++++..+... ..+....++..+|.++...|++++|..+|++++++.+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999765432 23445678899999999999999999999999998643
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.7e-25 Score=204.30 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
....+.+|.++...|++++|+..|+++++.. .++.++..+|.++...|++++|+..|+++++.+|.......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 3445567888888888888888888888888 78888888888888888888888888888887765421110
Q ss_pred hcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHH
Q 048034 315 AKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQ 394 (558)
Q Consensus 315 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~ 394 (558)
..+.++..+|.++...|++++|+.+|++++.+.|. +.
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----------------------~~ 113 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----------------------AD 113 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------------------HH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----------------------hH
Confidence 01567888999999999999999999999988776 23
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+.+|++++..+|.++.++..+|.++...|++++
T Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 114 ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT--KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHH
Confidence 46667778999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 475 AAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 475 A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
|+.+|+++++ ..|.++.++..+|.++...|++++|..+|+++++++
T Consensus 192 A~~~~~~al~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 192 AIADCNKAIE-------KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999988 568888999999999999999999999999999887
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=2e-24 Score=205.89 Aligned_cols=278 Identities=12% Similarity=-0.032 Sum_probs=232.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhhCCCCH-HHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHH
Q 048034 184 LVLKDKGSENLARTVLVESVNSYPWNW-NSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQ 262 (558)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 262 (558)
...+..|++.+|+..+++.....|.+. ++.. +++.+|...|++++|+..++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~-------------------------~l~r~yi~~g~~~~al~~~~~-- 59 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDV-------------------------FLYRAYLAQRKYGVVLDEIKP-- 59 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHH-------------------------HHHHHHHHTTCHHHHHHHSCT--
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHH-------------------------HHHHHHHHCCCHHHHHHHhcc--
Confidence 445778999999999988877777552 3333 348899999999999987765
Q ss_pred hhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHH
Q 048034 263 GTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN--DPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESC 340 (558)
Q Consensus 263 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~ 340 (558)
..|....++..++..+...+++++|++.+++++.. +|++...+..++.++...|++++|...+++ |.++.++
T Consensus 60 -~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~ 133 (291)
T 3mkr_A 60 -SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECM 133 (291)
T ss_dssp -TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHH
T ss_pred -cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHH
Confidence 24545667778889999999999999999999876 599999999999999999999999998887 8889999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 048034 341 CIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS 420 (558)
Q Consensus 341 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~ 420 (558)
..+|.++...|++++|+..|+++++.+|+...... ......++...|++++|+..|+++++..|+++
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l-------------~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQL-------------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHH-------------HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999999999999988543211 11112333456899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHhhhhcCCChHHH
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE-AAFYYKKDLERMEAEEREGPNMVEA 499 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~ 499 (558)
.+++.+|.++.. .|++++|+..|++++..+|+++.++.++|.++...|+.++ +..+++++++ ..|+++.+
T Consensus 201 ~~~~~la~~~~~--~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~-------~~P~~~~~ 271 (291)
T 3mkr_A 201 LLLNGQAACHMA--QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD-------AHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------HCTTCHHH
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------hCCCChHH
Confidence 999999999999 9999999999999999999999999999999999999976 5689999998 67888765
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 048034 500 LIFLATHCRAHNRFEDAEVYC 520 (558)
Q Consensus 500 ~~~la~~~~~~g~~~~A~~~~ 520 (558)
. .+..+.+.|+++..-|
T Consensus 272 ~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 272 K----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp H----HHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHc
Confidence 4 4566667777776655
No 35
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=1.8e-25 Score=217.73 Aligned_cols=293 Identities=16% Similarity=0.095 Sum_probs=239.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
+...++..|..+...|++++|+..|++++...|.+....... .+.+|.++...|++++|
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---------------------~~~l~~~~~~~g~~~~A 62 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAI---------------------YSQLGNAYFYLHDYAKA 62 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHH---------------------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHH---------------------HHHHHHHHHHcCCHHHH
Confidence 345688999999999999999999999999999986433222 22349999999999999
Q ss_pred HHHHHHHHhh------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHH
Q 048034 255 LTKYEYLQGT------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHR 328 (558)
Q Consensus 255 ~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~ 328 (558)
+..+++++.. .|....++..+|.++...|++++|+..++++++..+......
T Consensus 63 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------- 120 (338)
T 3ro2_A 63 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------- 120 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------------------
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch----------------------
Confidence 9999999875 344466888999999999999999999999998655432211
Q ss_pred HhhcCCCChhHHHHHHHHHhhcCC--------------------hHHHHHHHHHHHccCcCCHHHHHHhchhccccchHH
Q 048034 329 VFTTDKYRPESCCIIGNYYSLKGQ--------------------HEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRA 388 (558)
Q Consensus 329 ~~~~~~~~~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 388 (558)
....++..+|.++...|+ +++|+.++++++.+.+..... +....+
T Consensus 121 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~ 185 (338)
T 3ro2_A 121 ------GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR---------AAQGRA 185 (338)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH---------HHHHHH
T ss_pred ------HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH---------HHHHHH
Confidence 114578889999999999 999999999998764321110 123457
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------H
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------A 456 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------~ 456 (558)
+..+|.++...|++++|+.++++++.+.+.. ..++..+|.++.. .|++++|+.++++++...+.. .
T Consensus 186 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 8999999999999999999999999875432 3488999999999 999999999999999876544 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 457 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 457 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
.++..+|.++...|++++|+.+++++++..+... ..+....++..+|.++...|++++|..++++++++.+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999765432 2344567888999999999999999999999998864
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=2.1e-24 Score=205.73 Aligned_cols=272 Identities=13% Similarity=0.044 Sum_probs=234.0
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFS-NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF 319 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 319 (558)
...-.+..|++..|+..++++....|++ ......++++|...|+++.|+..++. .+|....++..++..+...++.
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 4667888999999999999887777766 35778889999999999999998866 2566677788888889989999
Q ss_pred hHHHHHHHHHhhc--CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 320 SALSYLAHRVFTT--DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 320 ~~a~~l~~~~~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
+++...+++++.. +|.++.+++.+|.++...|++++|+..|++ |.+ ..++..+|.+|.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~---------------~~~~~~l~~~~~ 141 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS---------------LECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS---------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC---------------HHHHHHHHHHHH
Confidence 9999999998875 699999999999999999999999999988 553 457889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMA--QCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la--~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 475 (558)
.+|++++|+..|+++++.+|++.......+ .++.. .|++++|+.+|++++...|+++.+++.+|.++..+|++++|
T Consensus 142 ~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~--~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG--GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999875544434 33334 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccCCCcHHHHHHHHHHHHHhc
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFED-AEVYCTRLLDYTGPEKETAKSMLRGMRMAQ 545 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~ll~~~~~~~ 545 (558)
+..|+++++ ..|+++.++.++|.++...|+.++ +..+++++++++|.++... .+...-..+.
T Consensus 220 ~~~l~~al~-------~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~-d~~~~~~~fd 282 (291)
T 3mkr_A 220 EGVLQEALD-------KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK-EYRAKENDFD 282 (291)
T ss_dssp HHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHH
Confidence 999999999 689999999999999999999976 5789999999998776543 3433333333
No 37
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=2.4e-22 Score=206.98 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=196.4
Q ss_pred HHHHHHH----HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 048034 241 LASTYQE----LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYS----LREFEQVEVVFEELLRNDPYRVEDMDMYSNV 312 (558)
Q Consensus 241 ~a~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (558)
+|.+|.. .+++++|+..|+++.+. .++.++..+|.+|.. .+++++|+.+|+++.+. .++.+...++.+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 3666666 56777777777776553 456667777777766 66777777777777664 356666667776
Q ss_pred HHh----cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHccCcCCHHHHHHhchhcccc
Q 048034 313 LYA----KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSI 384 (558)
Q Consensus 313 l~~----~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 384 (558)
+.. .++.+++...++++... .++.+++.+|.+|.. .+++++|+.+|+++++..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------- 253 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----------------- 253 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----------------
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----------------
Confidence 666 66777777777776654 356667777777765 667777777777776542
Q ss_pred chHHHHHhHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCc
Q 048034 385 DYRAWYGLGQAYEM----MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-----HMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 385 ~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-----~~~~~A~~~~~~al~~~~~~ 455 (558)
+..+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.+|.. . +++++|+.+|+++.+.. +
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~--~~~g~~~~~~~A~~~~~~a~~~~--~ 327 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK--GAEGVAKNREQAISWYTKSAEQG--D 327 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH--CBTTBCCCHHHHHHHHHHHHHTT--C
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--CCCCCcCCHHHHHHHHHHHHhcC--C
Confidence 34578899999998 89999999999999865 678999999999998 8 89999999999999874 5
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccC
Q 048034 456 AIALNQLAKLHHALG---RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 456 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 527 (558)
+.+++.+|.+|...| ++++|+.+|+++++ ..++.+++.+|.+|.. .+++++|+.+|+++++..
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~---------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA---------KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 789999999999977 88999999999998 3568999999999999 899999999999999864
No 38
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.1e-22 Score=211.67 Aligned_cols=346 Identities=11% Similarity=0.060 Sum_probs=263.7
Q ss_pred HHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCH--------H----H
Q 048034 158 LISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTI--------D----I 225 (558)
Q Consensus 158 l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------~----~ 225 (558)
+..+...+++.+...|.++.+|..+|..+.+.|++++|+.+|++++...| +...|..++...... + .
T Consensus 28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 55666667888888999999999999999999999999999999999999 788998887533110 0 0
Q ss_pred ----hhcCC-CCchHHHHHHHHHHHHH---------HhchHHHHHHHHHHHhhcCCCh--HHHHHHHHHH----------
Q 048034 226 ----LNSIN-LNNHWMKDFFLASTYQE---------LRMHNEALTKYEYLQGTFGFSN--YLQAQIAKAQ---------- 279 (558)
Q Consensus 226 ----~~~l~-~~~~~~~~~~~a~~~~~---------~~~~~~A~~~~~~~~~~~p~~~--~~~~~~a~~~---------- 279 (558)
+..++ .+.....+...+..... .|++++|...|++++. .|... .++...+...
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 11111 11111111112333333 7899999999999999 57654 2333332221
Q ss_pred ---HHcccHHHHHHHHHH------HHHc-----CCCCc-------chHHHHHHHHHhc------CCH----hHHHHHHHH
Q 048034 280 ---YSLREFEQVEVVFEE------LLRN-----DPYRV-------EDMDMYSNVLYAK------ECF----SALSYLAHR 328 (558)
Q Consensus 280 ---~~~~~~~~A~~~~~~------~l~~-----~p~~~-------~~~~~~~~~l~~~------~~~----~~a~~l~~~ 328 (558)
...+++..|...+.. .++. .|... ..+..+ +.+.. ++. ..+...+++
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~--~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY--IQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH--HHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH--HHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 134678888877766 3332 22211 122222 22222 122 367789999
Q ss_pred HhhcCCCChhHHHHHHHHHhh-------cCChH-------HHHHHHHHHHc-cCcCCHHHHHHhchhccccchHHHHHhH
Q 048034 329 VFTTDKYRPESCCIIGNYYSL-------KGQHE-------KSVVYFRRALK-LNKNYLSAWTLMGHEYKSIDYRAWYGLG 393 (558)
Q Consensus 329 ~~~~~~~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~lg 393 (558)
++..+|.++.+|+.+|.++.. .|+++ +|+..|+++++ +.|++. .+|..+|
T Consensus 264 al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~---------------~l~~~~~ 328 (530)
T 2ooe_A 264 CLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---------------LLYFAYA 328 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH---------------HHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH---------------HHHHHHH
Confidence 999999999999999999986 79987 99999999997 788854 4788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCC
Q 048034 394 QAYEMMHMPFYALHYFRKSVFLQPNDS-RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL-HHALGR 471 (558)
Q Consensus 394 ~~~~~~~~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~ 471 (558)
.++...|++++|...|++++++.|.++ .+|..+|.++.. .|++++|+..|+++++..|.....+...+.+ +...|+
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR--AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999986 699999999999 9999999999999999988877777776665 346999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
+++|..+|+++++ ..|+++.++..++.++...|+.++|..+|++++...|.++
T Consensus 407 ~~~A~~~~e~al~-------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 407 KSVAFKIFELGLK-------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHH-------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred hhHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 9999999999999 4588899999999999999999999999999998765443
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.1e-24 Score=216.40 Aligned_cols=279 Identities=15% Similarity=0.106 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCCh----HHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCCcch
Q 048034 236 MKDFFLASTYQELRMHNEALTKYEYLQGTFGFSN----YLQAQIAKAQYSLREFEQVEVVFEELLRN------DPYRVED 305 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~ 305 (558)
...+..|.++...|++++|+..|++++...|.++ .++..+|.++...|++++|+.+|++++.. .|....+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3345569999999999999999999999999884 57889999999999999999999999876 3444667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhcCCCC------hhHHHHHHHHHhhcCC--------------------hHHHHHH
Q 048034 306 MDMYSNVLYAKECFSALSYLAHRVFTTDKYR------PESCCIIGNYYSLKGQ--------------------HEKSVVY 359 (558)
Q Consensus 306 ~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~------~~~~~~lg~~~~~~~~--------------------~~~A~~~ 359 (558)
+..++.++...|++++|...+.+++...+.. +.++..+|.+|...|+ +++|+.+
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999998876653 4589999999999999 9999999
Q ss_pred HHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHH
Q 048034 360 FRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS------RLWIAMAQCYETE 433 (558)
Q Consensus 360 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~ 433 (558)
|++++.+.+..... +....++..+|.+|...|++++|+.+|++++.+.+... .++..+|.++..
T Consensus 170 ~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 239 (406)
T 3sf4_A 170 YEENLSLVTALGDR---------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF- 239 (406)
T ss_dssp HHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-
Confidence 99998874332111 12346789999999999999999999999998765443 388999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 434 QLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
.|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|+++++..+... ..+....++..+|.++
T Consensus 240 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 240 -LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-DRIGEGRACWSLGNAY 317 (406)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHH
Confidence 999999999999999876554 66899999999999999999999999999765432 2344477888999999
Q ss_pred HHcCCHHHHHHHHHHHhcc
Q 048034 508 RAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 508 ~~~g~~~~A~~~~~~al~~ 526 (558)
...|++++|..++++++++
T Consensus 318 ~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999876
No 40
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=8.6e-22 Score=204.92 Aligned_cols=393 Identities=9% Similarity=-0.015 Sum_probs=289.5
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccC--C-hHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHh
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTG--K-KSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTL 168 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~--~-~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (558)
....+++ +...|++++|..+++++.. + ...+...|+.+... .+....+...+++.
T Consensus 15 ~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~---------------------~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 15 AWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIK---------------------AKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh---------------------cCCHHHHHHHHHHH
Confidence 3445677 4778999999999998843 2 22222333332211 12244555567777
Q ss_pred hhCCCCchHHHHHHHH-HHHhcCChHHHHH----HHHHHhhh---CCCCHHHHHHHHhhhcC---------HHHh-----
Q 048034 169 RKNGTMDPFILYLYGL-VLKDKGSENLART----VLVESVNS---YPWNWNSWLELQSLCTT---------IDIL----- 226 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~---------~~~~----- 226 (558)
+...| +..+|+.++. +....|++++|.+ .|++++.. +|.+...|...+.+... .+..
T Consensus 73 l~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 73 LMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp TTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred HhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 77777 6778888885 4456788888776 88888764 56778888877665432 2221
Q ss_pred ---hcCCCCchHHHHHHHHHHH---------------HHHhchHHHHHHHHH------HHhh-----cCCC-------hH
Q 048034 227 ---NSINLNNHWMKDFFLASTY---------------QELRMHNEALTKYEY------LQGT-----FGFS-------NY 270 (558)
Q Consensus 227 ---~~l~~~~~~~~~~~~a~~~---------------~~~~~~~~A~~~~~~------~~~~-----~p~~-------~~ 270 (558)
..+..|......++.+... ...+++..|...+.. .++. .|.. ..
T Consensus 152 ~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 152 VYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 1123343322222222111 124567778776665 3332 2221 12
Q ss_pred HHHHHHHHHHHcc------c----HHHHHHHHHHHHHcCCCCcchHHHHHHHHHh-------cCCHh-------HHHHHH
Q 048034 271 LQAQIAKAQYSLR------E----FEQVEVVFEELLRNDPYRVEDMDMYSNVLYA-------KECFS-------ALSYLA 326 (558)
Q Consensus 271 ~~~~~a~~~~~~~------~----~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~-------~~~~~-------~a~~l~ 326 (558)
+|... +.+..+ + ...++..|++++..+|.+++.+..++.++.. .|+.+ ++...+
T Consensus 232 ~w~~~--~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 232 MWKKY--IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHH--HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 33332 222222 2 2478899999999999999999999999886 68876 899999
Q ss_pred HHHhh-cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHH
Q 048034 327 HRVFT-TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYA 405 (558)
Q Consensus 327 ~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 405 (558)
++++. ..|.++.+|..+|.++...|++++|...|++++++.|.+.. .+|..+|.++.+.|++++|
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------------HHHHHHHHHHHHhcCHHHH
Confidence 99997 79999999999999999999999999999999999988532 3688889999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 406 LHYFRKSVFLQPNDSRLWIAMAQC-YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 406 ~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
...|+++++..|.....+...+.+ +.. .|++++|..+|+++++..|+++.+|..++.++...|+.++|..+|++++.
T Consensus 376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~--~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 376 RMIFKKAREDARTRHHVYVTAALMEYYC--SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHTCTTCCTHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHH--cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999999999999888877776655 456 89999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 048034 485 RMEAEEREGP-NMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 485 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 529 (558)
..+ .+| ....+|...+......|+.+.+..+++++++..|.
T Consensus 454 ~~~----~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 454 SGS----LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCC----SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred ccC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 210 122 23447777888889999999999999999998764
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=3.1e-24 Score=203.03 Aligned_cols=254 Identities=14% Similarity=0.055 Sum_probs=204.2
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhc----CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTF----GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
+......|++++|+..++++++.. |.++.++..+|.++...|++++|+..|+++++.+|.+
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------- 76 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM--------------- 76 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------
Confidence 444555688999999999999863 4566788899999999999999999999999887765
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
+.++..+|.++...|++++|+.+|+++++++|++. .+++.+|.+|.
T Consensus 77 -------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~ 122 (275)
T 1xnf_A 77 -------------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------------YAHLNRGIALY 122 (275)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------------HHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc---------------HHHHHHHHHHH
Confidence 56778889999999999999999999999888744 46888889999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048034 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 477 (558)
..|++++|+.+|++++...|+++.....++.+ .. .|++++|+..+++++...|.+...+ .++.++...++.++|+.
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~--~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ--KLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH--HHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH--hcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHH
Confidence 99999999999999999999888766665544 55 7899999999999988888776554 47777788888888999
Q ss_pred HHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhccCCCCC
Q 048034 478 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMAQSSFPAM 551 (558)
Q Consensus 478 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~~~a~~~~ 551 (558)
.+++++...+. ..+....++..+|.++...|++++|+.+|++++..+|.+.......+..++++.+|+.++
T Consensus 199 ~~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhccccc---ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 88888763221 112346788889999999999999999999999998877777777888888888888775
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.92 E-value=1.5e-23 Score=194.39 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=175.7
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
..+..++.+|.++...|++++|+..|.+++..+|.+..++..+ |.++...|++++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~l-------------------------a~~~~~~~~~~~ 75 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF-------------------------ANLLSSVNELER 75 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHH-------------------------HHHHHHcCCHHH
Confidence 4577899999999999999999999999999999999888877 999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC
Q 048034 254 ALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD 333 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 333 (558)
|+..+++++...|.+..++..+|.++...|++++|+..|+++++.+|.+
T Consensus 76 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------- 124 (243)
T 2q7f_A 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------------------------------- 124 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------------------------------
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------------------------------
Confidence 9999999999999999999999999999999999999999999888765
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
+.++..+|.++...|++++|+.+++++++..|++. .++..+|.++...|++++|+.+|++++
T Consensus 125 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 125 ---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT---------------EARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp ---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677888899999999999999999998888744 467888889999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 470 (558)
...|+++.++..+|.++.. .|++++|+.+|+++++.+|+++.++..++.+....+
T Consensus 187 ~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 187 EQDPGHADAFYNAGVTYAY--KENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHH--TTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HhCcccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999999998 999999999999999999999888888877665544
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=3.6e-23 Score=183.34 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=163.9
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
+++.+|+.+|.+|...|++++|+.+|+++++++|++. .+|+.+|.+|...|++++|+..+.+++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV---------------ETLLKLGKTYMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999955 4688999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
..|+++.++..+|.++.. .++++.|+..+.+++...|.+..++..+|.++..+|++++|+..|+++++ .+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-------~~p 138 (184)
T 3vtx_A 68 LDTTSAEAYYILGSANFM--IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS-------IKP 138 (184)
T ss_dssp HCCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCT
T ss_pred cCchhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-------hcc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999 679
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 048034 495 NMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
.++.++..+|.++..+|++++|+.+|+++++++|.+
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999999999998654
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=5.5e-23 Score=190.60 Aligned_cols=217 Identities=18% Similarity=0.174 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK 316 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 316 (558)
..+.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|+++++.+|.+
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------- 90 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-------------- 90 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--------------
Confidence 334467777777777777777777777777777777777777777777777777777777766554
Q ss_pred CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 317 ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
+.++..+|.++...|++++|+.+|+++++..|.+. .++..+|.++
T Consensus 91 --------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~ 135 (243)
T 2q7f_A 91 --------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG---------------DLFYMLGTVL 135 (243)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH---------------HHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHH
Confidence 67888899999999999999999999999998854 4688999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 476 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 476 (558)
...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+..|++++...|.++.++..+|.++...|++++|+
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN--EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 477 FYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 477 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
.+|+++++ ..|++..++..++.+....|
T Consensus 214 ~~~~~~~~-------~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 214 EMLDKAID-------IQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHH-------HCTTCHHHHHHHTC------
T ss_pred HHHHHHHc-------cCcchHHHHHHHHHHHhhcc
Confidence 99999999 67888999888887765544
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=4.5e-22 Score=201.99 Aligned_cols=347 Identities=12% Similarity=0.040 Sum_probs=235.4
Q ss_pred HHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCC
Q 048034 94 YLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGT 173 (558)
Q Consensus 94 ~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 173 (558)
..+|..++..|++++|...+++... ....+....+ +.+........++..+...+.+....
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~----------------~g~~~A~~~L-g~~y~~~g~~~d~~~A~~~~~~A~~~-- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAE----------------LGYSEAQVGL-ADIQVGTRDPAQIKQAEATYRAAADT-- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------------HTCCTGGGTC-C---------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----------------CCCHHHHHHH-HHHHHccCCCCCHHHHHHHHHHHHhC--
Confidence 4589999999999999999987521 0000111100 11110011112223444444444432
Q ss_pred CchHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH
Q 048034 174 MDPFILYLYGLVLKDKG-----SENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL 248 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (558)
++.+++.+|.++...| ++++|+.+|++++... +..++..| |.+|...
T Consensus 68 -~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~L-------------------------g~~y~~~ 119 (452)
T 3e4b_A 68 -SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPL-------------------------AMLYLQY 119 (452)
T ss_dssp ----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHH-------------------------HHHHHHC
T ss_pred -CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH-------------------------HHHHHhC
Confidence 7888999999777766 7899999999999844 44477666 7777766
Q ss_pred hchHHH---HHHHHHHHhhcCCChHHHHHHHHHHHHcccH----HHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC---C
Q 048034 249 RMHNEA---LTKYEYLQGTFGFSNYLQAQIAKAQYSLREF----EQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE---C 318 (558)
Q Consensus 249 ~~~~~A---~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~---~ 318 (558)
+...++ ...+.++.. +.++.+++.+|.++...+.+ +.+..+++.+...+ +.+...++.++...| +
T Consensus 120 ~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~ 194 (452)
T 3e4b_A 120 PHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQ 194 (452)
T ss_dssp GGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHH
T ss_pred CCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCccc
Confidence 654443 333433332 34567777888888887744 44444444444433 347888888888887 7
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc----CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHH
Q 048034 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLK----GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQ 394 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~ 394 (558)
..++...++++....+..+..++.+|.+|... +++++|+.+|+++. |.++ .+++.+|.
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~---------------~a~~~Lg~ 256 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP---------------ASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---------------HHHHHHHH
Confidence 88888888888888888888888888888765 78889999999887 6644 46777777
Q ss_pred H-H--HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 395 A-Y--EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH-----MLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 395 ~-~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
+ | ...+++++|+.+|+++.+. .++.+++.+|.+|.. | ++++|+.+|+++. +.++.+++++|.+|
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~---G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYE---GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH---CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 7 4 4678889999999988864 488888899988875 5 8899999999888 78888899999888
Q ss_pred HH----cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccC
Q 048034 467 HA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 467 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 527 (558)
.. ..++++|+.+|+++.+ ..++.+.+.||.+|.. .+++.+|..+|+++.+..
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~---------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAAR---------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHT---------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHh---------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 76 3488899999988876 4456788888888875 458889999998888764
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=6.3e-22 Score=184.67 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=193.1
Q ss_pred CCc-hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 173 TMD-PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 173 ~~~-~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
|.+ +.+++.+|.++...|++++|+..|.+++..+|.+..++..+ |.++...|++
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-------------------------a~~~~~~~~~ 87 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL-------------------------AVVFQTEMEP 87 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHH-------------------------HHHHHHcCCH
Confidence 444 78899999999999999999999999999999999888887 9999999999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFT 331 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~ 331 (558)
++|+..+++++...|.+..++..+|.++...|++++|+.+|++++. .|.
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~------------------------------ 136 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTL------------------------------ 136 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTT------------------------------
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc------------------------------
Confidence 9999999999999999999999999999999999999999999987 221
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
.|.++.++..+|.++...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.+|++
T Consensus 137 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 137 -YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP---------------SVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp -CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 233467788899999999999999999999999988854 4688899999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 461 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 461 (558)
++...|.+...+..++.++.. .|++++|..+++++++..|+++.+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 201 FAQGGGQNARSLLLGIRLAKV--FEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHTTSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHhCcCcHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999 999999999999999999998876543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=5.3e-22 Score=187.61 Aligned_cols=249 Identities=12% Similarity=0.009 Sum_probs=162.0
Q ss_pred hchhHHHHHHHHHHhhhC----CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcC
Q 048034 154 VNRELISLERELSTLRKN----GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSI 229 (558)
Q Consensus 154 ~~~~l~~~~~~l~~~~~~----~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l 229 (558)
...++..+...+.+.+.. +|.++.+++.+|.++...|++++|+..|.+++..+|.+..+|..+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------- 83 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL------------- 83 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH-------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH-------------
Confidence 345666666666666654 245677888889999999999999999999999888888888777
Q ss_pred CCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHH
Q 048034 230 NLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMY 309 (558)
Q Consensus 230 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 309 (558)
|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..|+++++.+|.+.......
T Consensus 84 ------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 84 ------------GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL 151 (275)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------HHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 88888889999999999999988888888888899999999999999999999988888875433332
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHH
Q 048034 310 SNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAW 389 (558)
Q Consensus 310 ~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 389 (558)
+ +....|+.+++...+.+++...|.+...+. ++.++...++.++|+..+++++...|.... .+..++
T Consensus 152 ~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~ 218 (275)
T 1xnf_A 152 Y-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE-----------HLSETN 218 (275)
T ss_dssp H-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-----------HHHHHH
T ss_pred H-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc-----------cccHHH
Confidence 2 234445555555555555555555444333 444445555555555555555554443211 123445
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY 445 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~ 445 (558)
+.+|.+|...|++++|+.+|++++..+|++... .+.++.. +|++++|+..|
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~--l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLE--LSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHH--HHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHH--HHHHHhhHHHH
Confidence 555555555555555555555555555544222 2444444 55555555544
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=2.3e-22 Score=205.48 Aligned_cols=216 Identities=15% Similarity=0.091 Sum_probs=194.8
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCCh-HHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCc
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSE-NLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNN 233 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~ 233 (558)
...+..+...+.......+.++.+++.+|.++...|++ ++|+..|+++++.+|.+..+|..+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~l----------------- 143 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQL----------------- 143 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHH-----------------
Confidence 34456666677777778889999999999999999999 999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHcCCCCcc
Q 048034 234 HWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL---------REFEQVEVVFEELLRNDPYRVE 304 (558)
Q Consensus 234 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~ 304 (558)
|.++...|++++|+..|+++++..|+ ..++..+|.++... |++++|+..|+++++.+|.+
T Consensus 144 --------g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-- 212 (474)
T 4abn_A 144 --------GEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-- 212 (474)
T ss_dssp --------HHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC--
Confidence 99999999999999999999999998 79999999999999 99999999999999988876
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc--------CChHHHHHHHHHHHccCc---CCHHH
Q 048034 305 DMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK--------GQHEKSVVYFRRALKLNK---NYLSA 373 (558)
Q Consensus 305 ~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~ 373 (558)
+.+|+.+|.+|... |++++|+.+|+++++++| +
T Consensus 213 --------------------------------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 256 (474)
T 4abn_A 213 --------------------------------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS---- 256 (474)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG----
T ss_pred --------------------------------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc----
Confidence 56777888888888 889999999999999988 5
Q ss_pred HHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 374 WTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
++.+|+.+|.+|...|++++|+.+|+++++++|+++.++..++.++.. .|++++|+..+.+
T Consensus 257 -----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~--lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 -----------NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF--LSRLTSLLESKGK 317 (474)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HHHHHHHHHHTTT
T ss_pred -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HHHHHHHHHHhcc
Confidence 445788999999999999999999999999999999999999999999 9999999887654
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=1.5e-21 Score=178.39 Aligned_cols=217 Identities=15% Similarity=0.047 Sum_probs=190.7
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
.|.++.+++.+|.++...|++++|+..|.+++..+|.+..++..+ |.++...|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-------------------------~~~~~~~~~~ 58 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVR-------------------------AEIYQYLKVN 58 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHH-------------------------HHHHHHcCCh
Confidence 467888999999999999999999999999999999998888777 8899999999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHh
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSL-REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVF 330 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~ 330 (558)
++|+..+++++...|.+..++..+|.++... |++++|+..|+++++ .|.
T Consensus 59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~----------------------------- 108 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPT----------------------------- 108 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT-----------------------------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC-----------------------------
Confidence 9999999999999999999999999999999 999999999999988 333
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFR 410 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 410 (558)
.|..+.++..+|.++...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.+|+
T Consensus 109 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 109 --YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP---------------PAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp --CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc---------------hHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233467788899999999999999999999999888754 467888899999999999999999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 048034 411 KSVFLQP-NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 462 (558)
Q Consensus 411 ~a~~~~p-~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 462 (558)
+++...| .++..+..++.++.. .|++++|..+++.+....|+++.+...+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKA--LGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999 889998888888888 9999999999999988899888765543
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=4.4e-22 Score=176.26 Aligned_cols=172 Identities=19% Similarity=0.319 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHH
Q 048034 268 SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYY 347 (558)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~ 347 (558)
++.+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+++++...+.+++...|..+.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 45556666666666666666666666666666665554444444444444444444444444445555566777777777
Q ss_pred hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048034 348 SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMA 427 (558)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 427 (558)
...++++.|+..+.+++.++|++. .++..+|.+|...|++++|+..|+++++++|.++.+|..+|
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYA---------------DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccch---------------HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 788888888888888877777744 35677777778888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 048034 428 QCYETEQLHMLEEAIKCYRRAANCNDSEA 456 (558)
Q Consensus 428 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 456 (558)
.+|.. +|++++|+.+|+++++++|+++
T Consensus 149 ~~~~~--~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 149 LAYEG--KGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHH--CCCHHHHHHHHHHHHhCCccCH
Confidence 88877 8888888888888887777654
No 51
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.90 E-value=4e-22 Score=198.57 Aligned_cols=245 Identities=11% Similarity=0.060 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhh---cCC---ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHH
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGT---FGF---SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYS 310 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (558)
..++.|.++...|++++|+..+++++.. .++ ...++..+|.++...|++++|+.+++++++..+......
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---- 180 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN---- 180 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch----
Confidence 3456899999999999999999999986 222 456889999999999999999999999998766543211
Q ss_pred HHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 311 NVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 311 ~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
+....++..+|.+|...|++++|+.+|++++.+.+..... +....++.
T Consensus 181 -----------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~ 228 (383)
T 3ulq_A 181 -----------------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---------QLMGRTLY 228 (383)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHH
Confidence 1124678899999999999999999999999987653321 11335789
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCcHHHH
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVF-----LQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----DSEAIAL 459 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~-----~~-p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~ 459 (558)
++|.+|...|++++|+.+|++++. .+ |..+.++..+|.++.. .|++++|+.++++++.+. |.....+
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 306 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK--LGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999998 46 7788999999999999 999999999999999874 3333456
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 460 NQLAKLHHALGR---DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 460 ~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
..+|.++...|+ +++|+.++++.- ..+....++..+|.+|...|++++|..+|++++++.
T Consensus 307 ~~l~~~~~~~~~~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 307 EFLKSLYLSGPDEEAIQGFFDFLESKM--------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCc--------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 789999999999 555665555541 345667788899999999999999999999998764
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=4.2e-21 Score=181.60 Aligned_cols=229 Identities=15% Similarity=0.125 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCCcchHHHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYS----LREFEQVEVVFEELLRNDPYRVEDMDMYS 310 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (558)
....+.+|.++...|++++|+..|+++++ |+++.++..+|.++.. .+++++|+.+|+++++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------------ 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------------
Confidence 33444455555555555555555555555 4455555555555555 55555555555555543
Q ss_pred HHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccch
Q 048034 311 NVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDY 386 (558)
Q Consensus 311 ~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 386 (558)
+ ++.+++.+|.+|.. .+++++|+.+|+++++.+ +.
T Consensus 72 ----------------------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------~~ 110 (273)
T 1ouv_A 72 ----------------------N--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----------------YA 110 (273)
T ss_dssp ----------------------T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------CH
T ss_pred ----------------------C--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----------------Cc
Confidence 2 47889999999999 999999999999999874 23
Q ss_pred HHHHHhHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 048034 387 RAWYGLGQAYEM----MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCNDSEAIALN 460 (558)
Q Consensus 387 ~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~ 460 (558)
.+++.+|.+|.. .+++++|+.+|+++++.. ++.++..+|.+|... ..+++++|+.+|+++++.+ ++.+++
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 186 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCF 186 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 578899999999 999999999999999876 788999999999741 0589999999999999874 578999
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCcH
Q 048034 461 QLAKLHHA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 461 ~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~ 531 (558)
.+|.+|.. .+++++|+.+|+++++ ..+ +.++..+|.+|.. .+++++|+.+|+++++.+|++.
T Consensus 187 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~-------~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 187 NAGNMYHHGEGATKNFKEALARYSKACE-------LEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHTCSSCCCHHHHHHHHHHHHH-------TTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHh-------CCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999999 9999999999999998 333 7899999999999 9999999999999999976543
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=1.6e-22 Score=206.64 Aligned_cols=217 Identities=17% Similarity=0.132 Sum_probs=205.5
Q ss_pred HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccH-HHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREF-EQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLA 326 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~ 326 (558)
.+.+++++..++......|.+..+++.+|.++...|++ ++|+..|+++++.+|.+..++..++.+++..|++++|...+
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45678888999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhHHHHHHHHHhhc---------CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 327 HRVFTTDKYRPESCCIIGNYYSLK---------GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
++++..+|. +.++..+|.++... |++++|+.+|+++++++|++. .+|+.+|.+|.
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~ 224 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---------------RSWYILGNAYL 224 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHH
Confidence 999999999 79999999999999 999999999999999999855 46888899999
Q ss_pred Hc--------CCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 398 MM--------HMPFYALHYFRKSVFLQP---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 398 ~~--------~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
.. |++++|+.+|+++++++| +++.+|.++|.+|.. .|++++|+..|+++++++|+++.++..++.++
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY--EESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88 999999999999999999 999999999999999 99999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHH
Q 048034 467 HALGRDEEAAFYYKKD 482 (558)
Q Consensus 467 ~~~g~~~~A~~~~~~a 482 (558)
..+|++++|+..+.+.
T Consensus 303 ~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 303 EFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999876553
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=7.5e-21 Score=179.81 Aligned_cols=227 Identities=18% Similarity=0.166 Sum_probs=200.5
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHH----
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQE---- 247 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---- 247 (558)
+|.++.+++.+|.++...|++++|+.+|+++++ |.+..++..+ |.++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~l-------------------------g~~~~~g~~~ 54 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNL-------------------------GVLYYQGQGV 54 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHH-------------------------HHHHHHTSSS
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHH-------------------------HHHHHcCCCc
Confidence 467899999999999999999999999999998 7788888777 999999
Q ss_pred HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHH----cccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYS----LREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
.+++++|+..|+++++.. ++.++..+|.++.. .+++++|+.+|+++++.+
T Consensus 55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------------ 108 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------------------------ 108 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------------
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------------
Confidence 999999999999999874 78999999999999 999999999999998753
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhh----cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH-
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSL----KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM- 398 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~- 398 (558)
++.+++.+|.+|.. .+++++|+.+|+++++.++ ..+++.+|.+|..
T Consensus 109 ------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 109 ------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-----------------GDGCTILGSLYDAG 159 (273)
T ss_dssp ------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHT
T ss_pred ------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc-----------------HHHHHHHHHHHHcC
Confidence 25788889999999 9999999999999998752 2468889999998
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----c
Q 048034 399 ---MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----L 469 (558)
Q Consensus 399 ---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~ 469 (558)
.+++++|+.+|+++++. .++.++..+|.+|..- ..+++++|+.+|+++++.+| +.+++.+|.+|.. .
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcc
Confidence 99999999999999987 4688899999998640 05899999999999999866 7889999999999 9
Q ss_pred CCHHHHHHHHHHHHH
Q 048034 470 GRDEEAAFYYKKDLE 484 (558)
Q Consensus 470 g~~~~A~~~~~~al~ 484 (558)
+++++|+.+|+++++
T Consensus 236 ~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 236 RNEKQAIENFKKGCK 250 (273)
T ss_dssp CCSTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999999998
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=1.5e-21 Score=182.10 Aligned_cols=210 Identities=19% Similarity=0.090 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
....+.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------------
Confidence 344445566666666666666666666666666666666666666666666666666666655544
Q ss_pred hcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc--cCcCCHHHHHHhchhccccchHHHHHh
Q 048034 315 AKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK--LNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 315 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
.++.++..+|.++...|++++|+.+|++++. ..|. +..++..+
T Consensus 103 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~l 147 (252)
T 2ho1_A 103 --------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE---------------RSRVFENL 147 (252)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT---------------HHHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc---------------cHHHHHHH
Confidence 4477888999999999999999999999999 5554 45678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 472 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 472 (558)
|.++...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+..+++++...|.+..++..++.++...|++
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK--EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChHHHHHH
Q 048034 473 EEAAFYYKKDLERMEAEEREGPNMVEALIF 502 (558)
Q Consensus 473 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 502 (558)
++|..+++++++ ..|+++.+...
T Consensus 226 ~~A~~~~~~~~~-------~~p~~~~~~~~ 248 (252)
T 2ho1_A 226 DTAASYGLQLKR-------LYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHH-------HCTTSHHHHHH
T ss_pred HHHHHHHHHHHH-------HCCCCHHHHHH
Confidence 999999999998 56776666543
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=3.4e-21 Score=176.04 Aligned_cols=215 Identities=18% Similarity=0.083 Sum_probs=170.2
Q ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 048034 233 NHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNV 312 (558)
Q Consensus 233 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (558)
......+.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..|+++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 3344444455555555555555555555555555555555555555555555555555555555544
Q ss_pred HHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc-CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHH
Q 048034 313 LYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK-GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYG 391 (558)
Q Consensus 313 l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 391 (558)
|.++.++..+|.++... |++++|+.+|++++. .|.. |.+..+++.
T Consensus 73 ---------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~------------~~~~~~~~~ 118 (225)
T 2vq2_A 73 ---------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTY------------PTPYIANLN 118 (225)
T ss_dssp ---------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTC------------SCHHHHHHH
T ss_pred ---------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCC------------cchHHHHHH
Confidence 44577888999999999 999999999999999 3322 124567899
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-SEAIALNQLAKLHHALG 470 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g 470 (558)
+|.++...|++++|+.+|+++++..|.++.++..+|.++.. .|++++|+..+++++...| .+...+..++.++...|
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML--AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999 9999999999999999999 99999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 048034 471 RDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 503 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 503 (558)
+.++|..+++.+.+ ..|+++.+...+
T Consensus 197 ~~~~a~~~~~~~~~-------~~p~~~~~~~~l 222 (225)
T 2vq2_A 197 NAQAAYEYEAQLQA-------NFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHH-------hCCCCHHHHHHh
Confidence 99999999999887 467777765544
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=4.6e-21 Score=184.65 Aligned_cols=225 Identities=11% Similarity=0.051 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch-------HHHHHHHHHHHh-h
Q 048034 193 NLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH-------NEALTKYEYLQG-T 264 (558)
Q Consensus 193 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~~~~-~ 264 (558)
++|+..|++++..+|.+..+|..++..+... +..+...|++ ++|+..|++++. .
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~------------------~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~ 94 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS------------------SKLLAEKGDMNNAKLFSDEAANIYERAISTL 94 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------chhhhhccchhhcccchHHHHHHHHHHHHHh
Confidence 7899999999999999999999983322110 0011234554 889999999998 6
Q ss_pred cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChh-HHHHH
Q 048034 265 FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPE-SCCII 343 (558)
Q Consensus 265 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~-~~~~l 343 (558)
.|++..+|..+|.++...|++++|...|+++++..|.+ +. +|..+
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~~~ 140 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----------------------------------PTLVYIQY 140 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC----------------------------------THHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC----------------------------------ccHHHHHH
Confidence 89999999999999999999999999999998877765 33 77788
Q ss_pred HHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHH
Q 048034 344 GNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE-MMHMPFYALHYFRKSVFLQPNDSRL 422 (558)
Q Consensus 344 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~ 422 (558)
|.++...|++++|+..|+++++.+|... .+|...+.... ..|++++|...|+++++.+|+++.+
T Consensus 141 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~---------------~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 205 (308)
T 2ond_A 141 MKFARRAEGIKSGRMIFKKAREDARTRH---------------HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 205 (308)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTSTTCCT---------------HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888999999999999999888743 34555555433 3689999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANC---ND-SEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
|..+|.++.. .|++++|+.+|++++.. .| ....+|..++..+...|+.++|..+++++++..
T Consensus 206 ~~~~~~~~~~--~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 206 VLAYIDYLSH--LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 9999999888 89999999999999985 44 367788888888888999999999999988854
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=3.4e-22 Score=200.93 Aligned_cols=258 Identities=17% Similarity=0.121 Sum_probs=210.8
Q ss_pred HHHhhhCCCCch----HHHHHHHHHHHhcCChHHHHHHHHHHhhh------CCCCHHHHHHHHhhhcCHHHhhcCCCCch
Q 048034 165 LSTLRKNGTMDP----FILYLYGLVLKDKGSENLARTVLVESVNS------YPWNWNSWLELQSLCTTIDILNSINLNNH 234 (558)
Q Consensus 165 l~~~~~~~~~~~----~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~l~~~~~ 234 (558)
+++.+...|.++ .+++.+|.++...|++++|+..|++++.. .|....++..
T Consensus 71 ~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------------- 131 (411)
T 4a1s_A 71 FQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN------------------- 131 (411)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH-------------------
Confidence 444444466665 58999999999999999999999999986 3333344433
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhh------cCCChHHHHHHHHHHHHccc-----------------HHHHHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGT------FGFSNYLQAQIAKAQYSLRE-----------------FEQVEVV 291 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~-----------------~~~A~~~ 291 (558)
+|.++...|++++|+..+++++.. .+....++..+|.++...|+ +++|+.+
T Consensus 132 ------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 132 ------LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 499999999999999999999987 45556788999999999999 8999999
Q ss_pred HHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH
Q 048034 292 FEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 292 ~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
++++++..+... ..+....++..+|.++...|++++|+.+|++++++.+...
T Consensus 206 ~~~al~~~~~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 206 YQENLKLMRDLG----------------------------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHHHT----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC----------------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 888876532211 1112256888999999999999999999999999876532
Q ss_pred HHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHHHHH
Q 048034 372 SAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCY 445 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~ 445 (558)
... ....++..+|.+|...|++++|+.+|++++.+.+.. ..++..+|.++.. .|++++|+.+|
T Consensus 258 ~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~ 326 (411)
T 4a1s_A 258 DRA---------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL--LHEFNTAIEYH 326 (411)
T ss_dssp CHH---------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred CcH---------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCCHHHHHHHH
Confidence 211 123478999999999999999999999999887644 6788999999999 99999999999
Q ss_pred HHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 446 RRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 446 ~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
++++.+.+.. ..++..+|.++...|++++|+.+|+++++..
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999875432 4589999999999999999999999999954
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=9.8e-21 Score=182.37 Aligned_cols=227 Identities=10% Similarity=-0.015 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHc-------ccH-------HHHHHHHHHHHH-cCCCCcchHHHHHHHHHhc
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSL-------REF-------EQVEVVFEELLR-NDPYRVEDMDMYSNVLYAK 316 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-------~~~-------~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~ 316 (558)
++|+..|++++..+|.++.+|+.+|..+... |++ ++|+..|+++++ .+|.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~--------------- 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--------------- 97 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT---------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc---------------
Confidence 6889999999999999999999999988754 554 666666666666 4554
Q ss_pred CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 317 ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
++.+|..+|.++...|++++|...|++++++.|.+.. .+|..+|.++
T Consensus 98 -------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~ 144 (308)
T 2ond_A 98 -------------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFA 144 (308)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHH
T ss_pred -------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHH
Confidence 4778999999999999999999999999999988542 1688999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA 476 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 476 (558)
...|++++|...|+++++..|.+..+|...+.+... ..|++++|+.+|+++++..|+++.+|..+|.++...|++++|+
T Consensus 145 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 145 RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH-TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999988877777442 1699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 477 FYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 477 ~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
.+|++++... ...| ....++..++.++...|++++|...++++++..|.+.
T Consensus 224 ~~~~~al~~~----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 224 VLFERVLTSG----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHSS----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 9999999821 0134 3678899999999999999999999999999988644
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=4.6e-22 Score=210.90 Aligned_cols=172 Identities=21% Similarity=0.278 Sum_probs=158.3
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
..|+++++++++|.+|..+|++++|+.+|+++++++|++. .+|+++|.+|..+|++++|+.+|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~---------------~a~~nLg~~l~~~g~~~eA~~~~~~ 68 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA---------------AAHSNLASVLQQQGKLQEALMHYKE 68 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577889999999999999999999999999999999855 4688999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 491 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 491 (558)
+++++|+++.+|+++|.++.. +|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++
T Consensus 69 Al~l~P~~~~a~~nLg~~l~~--~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~------- 139 (723)
T 4gyw_A 69 AIRISPTFADAYSNMGNTLKE--MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK------- 139 (723)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 492 EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 492 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.+|++..++.++|.++...|++++|.+.+++++++.
T Consensus 140 l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 140 LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 679999999999999999999999999999998764
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=4.9e-21 Score=175.89 Aligned_cols=184 Identities=17% Similarity=0.116 Sum_probs=167.7
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCc-CCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNK-NYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
+.++..++.+|.++...|++++|+.+|+++++++| .+. .+++.+|.++...|++++|+.+|+++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---------------VTAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 45678999999999999999999999999999998 533 46788999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 413 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA-------IALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
+..+|+++.++..+|.++.. +|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++
T Consensus 69 l~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~- 145 (228)
T 4i17_A 69 IKKNYNLANAYIGKSAAYRD--MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD- 145 (228)
T ss_dssp HHTTCSHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-
T ss_pred HHhCcchHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh-
Confidence 99999999999999999999 9999999999999999999998 6799999999999999999999999998
Q ss_pred HHhhhhcCCC--hHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHhccCCCcHHHHHH
Q 048034 486 MEAEEREGPN--MVEALIFLATHCRAHNRF---------------------------EDAEVYCTRLLDYTGPEKETAKS 536 (558)
Q Consensus 486 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~ 536 (558)
..|. ++.++..+|.++...|+. ++|+.+|+++++++|.+.+ +..
T Consensus 146 ------~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~-~~~ 218 (228)
T 4i17_A 146 ------VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE-IKQ 218 (228)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH-HHH
T ss_pred ------cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH-HHH
Confidence 7898 899999999999999998 9999999999999987764 444
Q ss_pred HHHHHH
Q 048034 537 MLRGMR 542 (558)
Q Consensus 537 ll~~~~ 542 (558)
++..+.
T Consensus 219 ~l~~i~ 224 (228)
T 4i17_A 219 MQDQVK 224 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=7.3e-21 Score=174.72 Aligned_cols=197 Identities=8% Similarity=0.008 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhhcC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhc
Q 048034 238 DFFLASTYQELRMHNEALTKYEYLQGTFG-FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAK 316 (558)
Q Consensus 238 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 316 (558)
.+..|.++...|++++|+..|+++++..| .+..+++.+|.++...|++++|+..|+++++
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------------------- 70 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK------------------- 70 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-------------------
Confidence 34445555555555555555555555554 4555555555555555555555555555554
Q ss_pred CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 317 ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
.+|.++.++..+|.+|...|++++|+.+|+++++++|++...+..++ .+|+.+|.++
T Consensus 71 ---------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--------~~~~~~g~~~ 127 (228)
T 4i17_A 71 ---------------KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA--------IYYLKEGQKF 127 (228)
T ss_dssp ---------------TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH--------HHHHHHHHHH
T ss_pred ---------------hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH--------HHHHHHhHHH
Confidence 45555788999999999999999999999999999999887655554 5799999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPN--DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
...|++++|+.+|+++++++|+ ++.++..+|.+|.. .|+. .++++..+.+.....+ .+......+.+++
T Consensus 128 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~--~~~~-----~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~ 198 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN--NGAD-----VLRKATPLASSNKEKY--ASEKAKADAAFKK 198 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH--HHHH-----HHHHHGGGTTTCHHHH--HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH--HHHH-----HHHHHHhcccCCHHHH--HHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999998 7765 2333444433332222 2222233344455
Q ss_pred HHHHHHHHHHH
Q 048034 475 AAFYYKKDLER 485 (558)
Q Consensus 475 A~~~~~~al~~ 485 (558)
|+.+|+++++.
T Consensus 199 A~~~~~~a~~l 209 (228)
T 4i17_A 199 AVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 55555555443
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=1.1e-21 Score=190.68 Aligned_cols=270 Identities=17% Similarity=0.084 Sum_probs=210.0
Q ss_pred HHHHHHHHHhhhCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCch
Q 048034 159 ISLERELSTLRKNGTMD----PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNH 234 (558)
Q Consensus 159 ~~~~~~l~~~~~~~~~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~ 234 (558)
..+...+++.+...|.+ +.+++.+|.++...|++++|+..|.+++...+.... .+..
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~ 82 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-------------------QLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------HHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-------------------cHHH
Confidence 33444445544446666 468899999999999999999999999876221000 0011
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCC------hHHHHHHHHHHHHccc--------------------HHHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFS------NYLQAQIAKAQYSLRE--------------------FEQV 288 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~--------------------~~~A 288 (558)
....+.+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 1223345999999999999999999999875543 3388889999999999 9999
Q ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCc
Q 048034 289 EVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNK 368 (558)
Q Consensus 289 ~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 368 (558)
+..+++++...+... ..+....++..+|.++...|++++|+.++++++.+.+
T Consensus 163 ~~~~~~a~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 163 VDLYEENLSLVTALG----------------------------DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHHHHHHHHT----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC----------------------------CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999988876432110 1112256788999999999999999999999998865
Q ss_pred CCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHH
Q 048034 369 NYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAI 442 (558)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~ 442 (558)
..... +....++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++.. .|++++|+
T Consensus 215 ~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~ 283 (338)
T 3ro2_A 215 EFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL--LQDYEKAI 283 (338)
T ss_dssp HHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHH
T ss_pred hcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH--hcCHHHHH
Confidence 42211 1123578999999999999999999999999876654 6788999999999 99999999
Q ss_pred HHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 443 KCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 443 ~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
.++++++...+.. ..++..+|.++...|++++|..+++++++..
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999999875432 4488999999999999999999999999843
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.87 E-value=1e-20 Score=188.38 Aligned_cols=250 Identities=12% Similarity=0.022 Sum_probs=198.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCC---CCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYP---WNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
...++.+|.++...|++++|+..|++++...+ +... .....+.+|.++...|+++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------~a~~~~~lg~~~~~~~~~~ 160 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE----------------------KAEFFFKMSESYYYMKQTY 160 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH----------------------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH----------------------HHHHHHHHHHHHHHcCCHH
Confidence 44677899999999999999999999998632 2110 1112234599999999999
Q ss_pred HHHHHHHHHHhhcCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHH
Q 048034 253 EALTKYEYLQGTFGFS-------NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYL 325 (558)
Q Consensus 253 ~A~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l 325 (558)
+|+..++++++..+.. ..++..+|.++...|++++|+..|+++++..+...+..
T Consensus 161 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------- 221 (383)
T 3ulq_A 161 FSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ------------------- 221 (383)
T ss_dssp HHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-------------------
Confidence 9999999999975443 34788899999999999999999999998765432211
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHH
Q 048034 326 AHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYA 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 405 (558)
....++..+|.+|...|++++|+.+|++++.+.+..... |....++..+|.+|...|++++|
T Consensus 222 ---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 222 ---------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL---------PSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG---------GGHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc---------hhHHHHHHHHHHHHHHCCCHHHH
Confidence 114578899999999999999999999999952211000 12346799999999999999999
Q ss_pred HHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048034 406 LHYFRKSVFLQ-----PNDSRLWIAMAQCYETEQLHM---LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 406 ~~~~~~a~~~~-----p~~~~~~~~la~~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 477 (558)
+.+|++++.+. |.....+..+|.++.. .|+ +++|+..+++. ...|....++..+|.+|...|++++|..
T Consensus 284 ~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 284 HEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLS--GPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999874 3333446779999999 999 88888888876 3344556688999999999999999999
Q ss_pred HHHHHHHHHH
Q 048034 478 YYKKDLERME 487 (558)
Q Consensus 478 ~~~~al~~~~ 487 (558)
+|+++++..+
T Consensus 361 ~~~~al~~~~ 370 (383)
T 3ulq_A 361 YFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.87 E-value=5.3e-21 Score=202.80 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=155.0
Q ss_pred hcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHH
Q 048034 264 TFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCII 343 (558)
Q Consensus 264 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~l 343 (558)
..|+++.++..+|.++..+|++++|+..|+++++++|++ +.+++.+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~----------------------------------~~a~~nL 49 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----------------------------------AAAHSNL 49 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------------------------------HHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------HHHHHHH
Confidence 457778888888888888899999988888888887776 6778889
Q ss_pred HHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 048034 344 GNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW 423 (558)
Q Consensus 344 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 423 (558)
|.+|...|++++|+.+|+++++++|++. .+|+++|.+|..+|++++|+.+|+++++++|+++.+|
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al~l~P~~~---------------~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~ 114 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAIRISPTFA---------------DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999998855 4688899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 488 (558)
.++|.+|.. +|++++|+.+|+++++++|+++.++.++|.++..+|++++|++.++++++..+.
T Consensus 115 ~~Lg~~~~~--~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 115 SNLASIHKD--SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999 999999999999999999999999999999999999999999999999987654
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=5.8e-21 Score=193.82 Aligned_cols=308 Identities=10% Similarity=-0.009 Sum_probs=215.9
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCCh---HHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCC
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSE---NLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINL 231 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~ 231 (558)
.+++..+...+.+.... .++.+++.+|.++...|+. ++|+.+|++++.. ++.++..|
T Consensus 16 ~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~L--------------- 75 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARL--------------- 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHH---------------
T ss_pred CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHH---------------
Confidence 34555666666555443 4667778888888888877 7888888888765 45555555
Q ss_pred CchHHHHHHHHHHHHHHh-----chHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCCCcch
Q 048034 232 NNHWMKDFFLASTYQELR-----MHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN-DPYRVED 305 (558)
Q Consensus 232 ~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~ 305 (558)
|.++...+ ++++|+..|+++.+. .++.+++.+|.+|...+..+++...++..... .+.++.+
T Consensus 76 ----------g~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a 143 (452)
T 3e4b_A 76 ----------GRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEA 143 (452)
T ss_dssp ----------HHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTH
T ss_pred ----------HHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHH
Confidence 77554444 788899999998874 44557888888888877655544433333322 2345678
Q ss_pred HHHHHHHHHhcCCHhHHHH----HHHHHhhcCCCChhHHHHHHHHHhhcC---ChHHHHHHHHHHHccCcCCHHHHHHhc
Q 048034 306 MDMYSNVLYAKECFSALSY----LAHRVFTTDKYRPESCCIIGNYYSLKG---QHEKSVVYFRRALKLNKNYLSAWTLMG 378 (558)
Q Consensus 306 ~~~~~~~l~~~~~~~~a~~----l~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~ 378 (558)
...++.++...+..++... +...+.. .++.+++.+|.+|...| ++++|+.+|+++....+...
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a------- 213 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALN---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA------- 213 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTT---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-------
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-------
Confidence 8888888888875544443 4444433 34559999999999999 99999999999999988743
Q ss_pred hhccccchHHHHHhHHHHHHc----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhc
Q 048034 379 HEYKSIDYRAWYGLGQAYEMM----HMPFYALHYFRKSVFLQPNDSRLWIAMAQCY---ETEQLHMLEEAIKCYRRAANC 451 (558)
Q Consensus 379 ~~~~~~~~~~~~~lg~~~~~~----~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~---~~~~~~~~~~A~~~~~~al~~ 451 (558)
..++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+| .. .+++++|+.+|+++.+.
T Consensus 214 --------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 214 --------QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPE--LGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp --------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGG--GCCHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHC
Confidence 4568999999766 79999999999998 89999999999994 45 89999999999999865
Q ss_pred CCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 048034 452 NDSEAIALNQLAKLHHALG-----RDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HNRFEDAEVYCTR 522 (558)
Q Consensus 452 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~ 522 (558)
+ ++.+++++|.+|. .| ++++|+.+|+++. +.++.+++.||.+|.. ..++++|..+|++
T Consensus 281 g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 281 D--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp T--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 4 7899999999998 56 9999999999875 4568899999999887 4499999999999
Q ss_pred HhccCCCc
Q 048034 523 LLDYTGPE 530 (558)
Q Consensus 523 al~~~~~~ 530 (558)
+.+...+.
T Consensus 348 Aa~~g~~~ 355 (452)
T 3e4b_A 348 AARNGQNS 355 (452)
T ss_dssp HHTTTCTT
T ss_pred HHhhChHH
Confidence 99865433
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.87 E-value=1.2e-20 Score=187.36 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHhhcC------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHH
Q 048034 237 KDFFLASTYQELRMHNEALTKYEYLQGTFG------FSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYS 310 (558)
Q Consensus 237 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (558)
..+++|..+...|++++|+..|++++...+ ....++..+|.++...|++++|+.+++++++..+.......
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~--- 179 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI--- 179 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh---
Confidence 456689999999999999999999998632 23568889999999999999999999999987665432110
Q ss_pred HHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 311 NVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 311 ~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
..+.++..+|.+|...|++++|+.+|++++.+.+...... ....++.
T Consensus 180 ------------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~ 226 (378)
T 3q15_A 180 ------------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR---------FIAISLL 226 (378)
T ss_dssp ------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH---------HHHHHHH
Confidence 1256788999999999999999999999998754322111 1345789
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCcHHHHH
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVF-----LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-----DSEAIALN 460 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~ 460 (558)
++|.+|...|++++|+.+|++++. .+|..+.++..+|.++.. .|++++|+.++++++.+. +.....+.
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK--AGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999 788889999999999999 999999999999999984 33455677
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 461 QLAKLHHALGR---DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 461 ~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
.++.++...|+ +.+|+.++++.- ..+....++..+|.+|...|++++|..+|+++++.
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKKN--------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888888 666666666521 33555678889999999999999999999999875
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=186.45 Aligned_cols=251 Identities=13% Similarity=0.093 Sum_probs=193.7
Q ss_pred CCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhh--------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Q 048034 231 LNNHWMKDFFLASTYQELRMHNEALTKYEYLQGT--------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYR 302 (558)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 302 (558)
.|..+...+.+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+.+|++++......
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667777788999999999999999999999884 55566788899999999999999999999998753100
Q ss_pred cchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC-----cCCHHHHHHh
Q 048034 303 VEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN-----KNYLSAWTLM 377 (558)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~ 377 (558)
. -...|....++..+|.++...|++++|+.+|++++++. ++...
T Consensus 103 ~--------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----- 151 (311)
T 3nf1_A 103 L--------------------------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD----- 151 (311)
T ss_dssp H--------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-----
T ss_pred h--------------------------CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-----
Confidence 0 00122336788999999999999999999999999874 33222
Q ss_pred chhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048034 378 GHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAA 449 (558)
Q Consensus 378 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al 449 (558)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++.. .|++++|+.+|++++
T Consensus 152 -------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 152 -------VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK--QGKFKQAETLYKEIL 222 (311)
T ss_dssp -------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Confidence 4567899999999999999999999999988 66677889999999999 999999999999999
Q ss_pred hcCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHH
Q 048034 450 NCNDS---------------EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFE 514 (558)
Q Consensus 450 ~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 514 (558)
...+. ....+..++..+...+.+.+|...+.++.. ..|....++..+|.++...|+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKV-------DSPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC-------CCchHHHHHHHHHHHHHHCCCHH
Confidence 76432 122444455556666777778888888877 67888999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 048034 515 DAEVYCTRLLDYTG 528 (558)
Q Consensus 515 ~A~~~~~~al~~~~ 528 (558)
+|..+|++++++.|
T Consensus 296 ~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 296 AAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2.7e-18 Score=185.14 Aligned_cols=347 Identities=12% Similarity=0.081 Sum_probs=265.4
Q ss_pred HHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCC
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTM 174 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 174 (558)
..|..+...|.|++|+.+++++....... ..++. ..+. +..+.+..+ ...
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~----~VLie-~i~n--------------------ldrAiE~Ae-----rvn 1103 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAV----QVLIE-HIGN--------------------LDRAYEFAE-----RCN 1103 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHH----HHHHH-HHhh--------------------HHHHHHHHH-----hcC
Confidence 47999999999999999999974211110 11111 1111 122222222 236
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
++.+|+.+|.++...|++++|+..|.++ ++++.|..+ +.++.+.|++++|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eV-------------------------a~~~~~lGkyEEA 1153 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEV-------------------------VQAANTSGNWEEL 1153 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHH-------------------------HHHHHHcCCHHHH
Confidence 7999999999999999999999999886 778888887 9999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCC
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDK 334 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~ 334 (558)
++.|..+.+..+ .+.+...+|.+|.+.+++++ ++.|. ..+ +...+..+|..++..|++.+|..++..
T Consensus 1154 IeyL~mArk~~~-e~~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~k------ 1220 (1630)
T 1xi4_A 1154 VKYLQMARKKAR-ESYVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNN------ 1220 (1630)
T ss_pred HHHHHHHHhhcc-cccccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHh------
Confidence 999999988764 33344468999999988885 44442 233 446677799999999999999999998
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc---------------ccchHHHHHhHHHHHHc
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK---------------SIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------------~~~~~~~~~lg~~~~~~ 399 (558)
+..|..+|.++...|++++|++++++| .+..+|...+..++ ..++..+..++..|...
T Consensus 1221 --A~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1221 --VSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDR 1293 (1630)
T ss_pred --hhHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHc
Confidence 468999999999999999999999998 34466665444432 34566677899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHH
Q 048034 400 HMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-----SEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~ 474 (558)
|.+++|+.++++++.++|.+..++..+|.+|.+...++..++++.|...+.+.+ .+...|..+..+|.+-|+++.
T Consensus 1294 G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dn 1373 (1630)
T 1xi4_A 1294 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 1373 (1630)
T ss_pred CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999999999999999999987557889999999999888877 677899999999999999999
Q ss_pred HHHHHHHHHHH------HHhhhhcCCChHHHHHHHHHHHHHcC---------------CHHHHHHHHHH
Q 048034 475 AAFYYKKDLER------MEAEEREGPNMVEALIFLATHCRAHN---------------RFEDAEVYCTR 522 (558)
Q Consensus 475 A~~~~~~al~~------~~~~~~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~ 522 (558)
|+..+-..... +... -....+++.++.....|...+ +++++...+.+
T Consensus 1374 A~~tm~~h~~~a~~~~~Fk~~-i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1374 AIITMMNHPTDAWKEGQFKDI-ITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHHHHHhccHhhhhhHHHHHH-hcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 99554443221 1111 135677889998888888766 66666666663
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=5.8e-20 Score=172.45 Aligned_cols=214 Identities=12% Similarity=0.066 Sum_probs=179.3
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCC---HHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHH
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWN---WNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQEL 248 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 248 (558)
.+.++..++.+|..+...|++++|+..|++++..+|.+ ..++..+ |.++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l-------------------------g~~~~~~ 65 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYL-------------------------ARAYYQN 65 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHH-------------------------HHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHH-------------------------HHHHHHh
Confidence 57889999999999999999999999999999999998 7777776 9999999
Q ss_pred hchHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHH--------cccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 249 RMHNEALTKYEYLQGTFGFS---NYLQAQIAKAQYS--------LREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
|++++|+..|+++++.+|++ +.+++.+|.+++. .|++++|+..|+++++.+|++......+..+....+
T Consensus 66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA 145 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH
Confidence 99999999999999998855 5688999999999 999999999999999999998766555433322211
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHH
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 397 (558)
.....++.+|.+|...|++++|+..|+++++..|+... ...+++.+|.+|.
T Consensus 146 -----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~l~~~~~ 196 (261)
T 3qky_A 146 -----------------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW------------ADDALVGAMRAYI 196 (261)
T ss_dssp -----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch------------HHHHHHHHHHHHH
Confidence 12345789999999999999999999999999998532 3457888999998
Q ss_pred Hc----------CCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhcCCHHHH
Q 048034 398 MM----------HMPFYALHYFRKSVFLQPNDS---RLWIAMAQCYETEQLHMLEEA 441 (558)
Q Consensus 398 ~~----------~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~~~A 441 (558)
.+ |++++|+..|+++++..|+++ .+...++.++.. .++++++
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~--~~~~~~~ 251 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR--LTELEGD 251 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH--HHHHHTC
T ss_pred HhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH--HHHhhhh
Confidence 77 888999999999999999885 455566777766 6665544
No 71
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=3.6e-19 Score=168.25 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=206.1
Q ss_pred HHHHHHHhch-HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 242 ASTYQELRMH-NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR--EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 242 a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
.......|.+ ++|+..+.+++.++|++..+|...+.++...| ++++++..+++++..+|.+.
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--------------- 103 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--------------- 103 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------------
Confidence 3344555555 68999999999999999999999999999999 99999999999998888874
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHH----hhc---CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHH
Q 048034 319 FSALSYLAHRVFTTDKYRPESCCIIGNYY----SLK---GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYG 391 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~~~~~~~~lg~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 391 (558)
.+|+..+.++ ... +++++++.++.++++.+|++ +.+|+.
T Consensus 104 -------------------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn---------------y~aW~~ 149 (306)
T 3dra_A 104 -------------------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN---------------HHVWSY 149 (306)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC---------------HHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC---------------HHHHHH
Confidence 5566666666 445 78999999999999999984 457888
Q ss_pred hHHHHHHcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 392 LGQAYEMMHMPF--YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM------LEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 392 lg~~~~~~~~~~--~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~------~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
.+.+....|.++ +++.++.++++.+|.|..+|...+.+... .++ ++++++++.+++..+|.+..+|+.++
T Consensus 150 R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~--l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 150 RKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS--KKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS--SGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 889999999998 99999999999999999999999999998 888 99999999999999999999999999
Q ss_pred HHHHHcCCHHHH-HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcHHHHHHHH
Q 048034 464 KLHHALGRDEEA-AFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD-YTGPEKETAKSML 538 (558)
Q Consensus 464 ~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ll 538 (558)
.++...|+..++ ..+++++++.- ...+.++.++..+|.++.+.|+.++|+++|+.+.+ ++|.....+.-..
T Consensus 228 ~ll~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 228 GIHERFDRSITQLEEFSLQFVDLE----KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCCGGGGHHHHHTTEEGG----GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHhcc----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999986554 44566555410 12377889999999999999999999999999996 7988777775433
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=5e-20 Score=172.91 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFS---NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
+.+|..++..|++++|+..|++++..+|.+ +.+++.+|.+++..|++++|+..|+++++..|.+..
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~----------- 87 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR----------- 87 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-----------
Confidence 334999999999999999999999999988 888999999999999999999999999999887532
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh--------cCChHHHHHHHHHHHccCcCCHHHHHHhchhcc--ccc
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL--------KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--SID 385 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~ 385 (558)
.+.+++.+|.++.. .|++++|+..|++++..+|++..++..+..... +..
T Consensus 88 --------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 88 --------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp --------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence 25678889999998 999999999999999999987654432221111 122
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcC
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN---DSRLWIAMAQCYETEQL----------HMLEEAIKCYRRAANCN 452 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~la~~~~~~~~----------~~~~~A~~~~~~al~~~ 452 (558)
...++.+|.+|...|++++|+..|++++...|+ .+.++..+|.+|.. + |++++|+..|+++++..
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~--~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIA--YAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH--HHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH--hcccchhhcccchHHHHHHHHHHHHHHC
Confidence 234589999999999999999999999999998 56799999999997 7 99999999999999999
Q ss_pred CCcH---HHHHHHHHHHHHcCCHHHHH
Q 048034 453 DSEA---IALNQLAKLHHALGRDEEAA 476 (558)
Q Consensus 453 ~~~~---~~~~~la~~~~~~g~~~~A~ 476 (558)
|+++ .+...++.++...++++++.
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9985 46667777777777665543
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.85 E-value=2.2e-19 Score=178.27 Aligned_cols=324 Identities=15% Similarity=0.145 Sum_probs=225.1
Q ss_pred HHHHHh--hcccchHHHHHHHhhccC------ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHH
Q 048034 95 LLAKSY--FDCREYRRAAHVLRDQTG------KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELS 166 (558)
Q Consensus 95 ~la~~~--~~~~~~~rA~~~l~~~~~------~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (558)
.|-.-| +..++++.|..+++++.. .....+-.|.... . +..-........ ......+++......++
T Consensus 15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~-~---r~~~~~~~~~~~-~~~~~~~~~~~~l~~i~ 89 (378)
T 3q15_A 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMC-F---RHQLMLDYLEPG-KTYGNRPTVTELLETIE 89 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHH-H---HHHHHHHTCCC---------CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-H---HHHHHHhhcCcc-cccccccchHHHHHHHh
Confidence 444444 889999999999987521 2222332222211 1 111111111110 01112233334444443
Q ss_pred HhhhC--CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHH
Q 048034 167 TLRKN--GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLAST 244 (558)
Q Consensus 167 ~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 244 (558)
..... +......++.+|..+...|++++|+..|.+++...+..... +......+.+|.+
T Consensus 90 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~a~~~~~lg~~ 150 (378)
T 3q15_A 90 TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-------------------IEKAEFHFKVAEA 150 (378)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-------------------HHHHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-------------------HHHHHHHHHHHHH
Confidence 32111 11223468889999999999999999999999864321110 0011123446999
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCC-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFS-------NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
+...|++++|+..++++++..+.. ..++..+|.++...|++++|+..|+++++..+......
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~----------- 219 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR----------- 219 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH-----------
Confidence 999999999999999999865432 34677899999999999999999999998643221111
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc-----cCcCCHHHHHHhchhccccchHHHHHh
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK-----LNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
....++..+|.+|...|++++|+.+|++++. .+|. ...+++.+
T Consensus 220 -----------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~l 267 (378)
T 3q15_A 220 -----------------FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL---------------LPKVLFGL 267 (378)
T ss_dssp -----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG---------------HHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh---------------HHHHHHHH
Confidence 1146788999999999999999999999999 4444 34678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQP-----NDSRLWIAMAQCYETEQLHM---LEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~la~~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
|.+|...|++++|+.++++++.+.+ .....+..++.++.. .++ +.+|+..+++. ...+....++..+|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~--~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE--TVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 9999999999999999999998743 344566778888888 888 88888888872 333445568889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHh
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~ 488 (558)
+|...|++++|..+|+++++..++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999985443
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.84 E-value=3.3e-20 Score=177.12 Aligned_cols=232 Identities=12% Similarity=0.029 Sum_probs=180.9
Q ss_pred chHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHH
Q 048034 250 MHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRV 329 (558)
Q Consensus 250 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~ 329 (558)
++++|+..|+++ |.++...|++++|+..|.+++++.+...+.
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------------------ 73 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE------------------------ 73 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCH------------------------
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCH------------------------
Confidence 588888888887 556788999999999999998864322110
Q ss_pred hhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc-CCHHHHHHH
Q 048034 330 FTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM-HMPFYALHY 408 (558)
Q Consensus 330 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~ 408 (558)
+..+.++..+|.+|...|++++|+.+|++++.+.|..... .....++..+|.+|... |++++|+.+
T Consensus 74 ----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 74 ----DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 0114678899999999999999999999999988653221 01235789999999996 999999999
Q ss_pred HHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHcCCHHHH
Q 048034 409 FRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI-------ALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 409 ~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~la~~~~~~g~~~~A 475 (558)
|++++.+.|.+ ..++..+|.++.. +|++++|+.+|++++.+.|.+.. ++.++|.++..+|++++|
T Consensus 141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 141 YELAGEWYAQDQSVALSNKCFIKCADLKAL--DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998754 5678999999999 99999999999999999887643 688999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVE-----ALIFLATHCR--AHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGM 541 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~ 541 (558)
+.+|+++++ ..|.... .+..++..+. ..+++++|+..|++++.++|........+-+.+
T Consensus 219 ~~~~~~al~-------l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 219 ARTLQEGQS-------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHGGGC-------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999998 3444332 3445666664 457899999999999998865544443333333
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=1.4e-18 Score=172.09 Aligned_cols=308 Identities=13% Similarity=0.055 Sum_probs=238.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
+.++..+|.++...|++++|+..+.+++...|.+...... .....+|.++...|++++|.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~A~ 73 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI--------------------VATSVLGEVLHCKGELTRSL 73 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHH--------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHH--------------------HHHHHHHHHHHhcCcHHHHH
Confidence 4567889999999999999999999999988755322111 11234589999999999999
Q ss_pred HHHHHHHhhcCCCh------HHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--------CCcchHHHHHHHHHhcCCHhH
Q 048034 256 TKYEYLQGTFGFSN------YLQAQIAKAQYSLREFEQVEVVFEELLRNDP--------YRVEDMDMYSNVLYAKECFSA 321 (558)
Q Consensus 256 ~~~~~~~~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~~~~~l~~~~~~~~ 321 (558)
..+++++...|... .++..+|.++...|++++|+..+++++...+ .....+..++.+++..|++++
T Consensus 74 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 99999998655432 3467799999999999999999999998652 233455678899999999999
Q ss_pred HHHHHHHHhhcCCC-----ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcC--CHHHHHHhchhccccchHHHHHhHH
Q 048034 322 LSYLAHRVFTTDKY-----RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKN--YLSAWTLMGHEYKSIDYRAWYGLGQ 394 (558)
Q Consensus 322 a~~l~~~~~~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~lg~ 394 (558)
+...+.+++...+. ...++..+|.++...|++++|..++++++.+.+. ....+. ......++.
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~----------~~~~~~~~~ 223 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI----------SNANKVRVI 223 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH----------HHHHHHHHH
Confidence 99999999987765 2457889999999999999999999999887433 111111 011224556
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHH
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------EAIALNQLAK 464 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~ 464 (558)
++...|++++|..++++++...|.. ...+..+|.++.. .|++++|...+++++...+. ...++..+|.
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 6889999999999999999877653 3457889999999 99999999999999876432 2247888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 529 (558)
++...|++++|...+++++......+ ....+...| +.....+++++...|.
T Consensus 302 ~~~~~g~~~~A~~~l~~al~~~~~~g------------~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLDALKLANRTG------------FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHC------------CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcccc------------HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 99999999999999999998653211 112333344 6777788888887765
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=182.81 Aligned_cols=247 Identities=10% Similarity=0.037 Sum_probs=190.3
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhh--------CCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHH
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNS--------YPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLAS 243 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (558)
.|..+.+++.+|.++...|++++|+.+|.+++.. .|....++.. +|.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------la~ 77 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI-------------------------LAL 77 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHH-------------------------HHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-------------------------HHH
Confidence 4566789999999999999999999999999984 4444444444 499
Q ss_pred HHHHHhchHHHHHHHHHHHhhc--------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------CCCcchHH
Q 048034 244 TYQELRMHNEALTKYEYLQGTF--------GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRND--------PYRVEDMD 307 (558)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~ 307 (558)
++...|++++|+..+++++... |....++..+|.++...|++++|+.+|+++++.. |.....+.
T Consensus 78 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999999999863 4456788899999999999999999999999874 55566778
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhc--------CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcC---------C
Q 048034 308 MYSNVLYAKECFSALSYLAHRVFTT--------DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKN---------Y 370 (558)
Q Consensus 308 ~~~~~l~~~~~~~~a~~l~~~~~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~ 370 (558)
.++.++...|++++|...+++++.. .|..+.++..+|.++...|++++|+.+|++++...|. .
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8899999999999999999999887 6777889999999999999999999999999976433 1
Q ss_pred HHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 371 LSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
...|. ....+..++..+...+.+.+|...++++....|..+.++..+|.+|.. .|++++|+.+|+++++
T Consensus 238 ~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWM---------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR--QGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHH---------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 11222 123455566666677777778888888888888888888888888888 8888888888888887
Q ss_pred cCCC
Q 048034 451 CNDS 454 (558)
Q Consensus 451 ~~~~ 454 (558)
+.|.
T Consensus 307 l~~~ 310 (311)
T 3nf1_A 307 SRKQ 310 (311)
T ss_dssp HHC-
T ss_pred Hhhc
Confidence 7654
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=9.3e-20 Score=164.61 Aligned_cols=199 Identities=16% Similarity=0.093 Sum_probs=158.5
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc-ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
+++.++..|..+...|++++|+.+|++++.++|++..+|...+.... .......+.+|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999997765544221110 11122334499999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhhhhc
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR--DEEAAFYYKKDLERMEAEERE 492 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~ 492 (558)
++|+++.++..+|.++.. .|++++|+.+|+++++++|+++.+++.+|.+|...|+ ...+...+++++. .
T Consensus 83 ~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-------~ 153 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVC--RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-------P 153 (208)
T ss_dssp HCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-------C
T ss_pred HCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-------C
Confidence 999999999999999999 9999999999999999999999999999999987765 3455666666553 2
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhcc
Q 048034 493 GPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMAQS 546 (558)
Q Consensus 493 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~~~ 546 (558)
+....+++.+|.++...|++++|+.+|+++++++|. .+ +...+..+...++
T Consensus 154 -~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~-~~~~l~~i~~~~~ 204 (208)
T 3urz_A 154 -TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TE-AQKTLDKILRIEK 204 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HH-HHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HH-HHHHHHHHHHHHH
Confidence 223457788999999999999999999999999874 43 3444555555443
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2.2e-19 Score=191.50 Aligned_cols=212 Identities=11% Similarity=-0.079 Sum_probs=182.3
Q ss_pred hhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHH--------HcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCC
Q 048034 263 GTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELL--------RNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDK 334 (558)
Q Consensus 263 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~ 334 (558)
..+|+++...+..+ ...|++++|+..|++++ +.+|.+..++..++.++...|++++|...+++++..+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35677777776666 78899999999999999 88899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.++.+++.+|.++...|++++|+..|+++++++|++. .+|+.+|.++...|++++ +.+|+++++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---------------~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL---------------APKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS---------------HHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999854 478899999999999999 999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhhhhcC
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA-AFYYKKDLERMEAEEREG 493 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~ 493 (558)
++|+++.+|+++|.++.. +|++++|+..|+++++++|++..+++++|.++...++.+++ ...++++++.+.......
T Consensus 529 ~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~ 606 (681)
T 2pzi_A 529 TNDGVISAAFGLARARSA--EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTE 606 (681)
T ss_dssp HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTS
T ss_pred hCCchHHHHHHHHHHHHH--cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999 99999999999999999999999999999999888875555 666777766554433233
Q ss_pred CC
Q 048034 494 PN 495 (558)
Q Consensus 494 ~~ 495 (558)
+.
T Consensus 607 ~~ 608 (681)
T 2pzi_A 607 PR 608 (681)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.83 E-value=2.8e-18 Score=169.95 Aligned_cols=276 Identities=12% Similarity=-0.002 Sum_probs=223.4
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChH-----HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcch------HH
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNY-----LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVED------MD 307 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~ 307 (558)
..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|+..+++++...|..... ..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 44688999999999999999999998775532 56788999999999999999999999876654333 46
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhcC--------CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhch
Q 048034 308 MYSNVLYAKECFSALSYLAHRVFTTD--------KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGH 379 (558)
Q Consensus 308 ~~~~~l~~~~~~~~a~~l~~~~~~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 379 (558)
.++.++...|++.++...+++++... |....++..+|.++...|++++|..++++++.+.+....
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 170 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP------- 170 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-------
Confidence 68888999999999999999988764 334567788999999999999999999999998876432
Q ss_pred hccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048034 380 EYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP--NDSRLWI-----AMAQCYETEQLHMLEEAIKCYRRAANCN 452 (558)
Q Consensus 380 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~-----~la~~~~~~~~~~~~~A~~~~~~al~~~ 452 (558)
+....++..+|.++...|++++|..++++++.+.+ ..+..+. .++.++.. .|++++|...+++++...
T Consensus 171 ---~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 171 ---QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM--TGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp ---GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHSCCCC
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH--CCCHHHHHHHHHhCCCCC
Confidence 11235688999999999999999999999987632 2222222 34456778 999999999999999877
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 453 DSE----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 453 ~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
+.. ...+..+|.++...|++++|...+++++...+..+ ..+....++..+|.++...|++++|...+++++.+.
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 643 33678899999999999999999999998654322 112234578889999999999999999999998753
No 80
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1.9e-17 Score=178.73 Aligned_cols=347 Identities=13% Similarity=0.054 Sum_probs=240.9
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhccCChHHH-----HHHHHHHHH---HchhhHHHHHHhhCCCCCCchhchhHHHHH
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQTGKKSVF-----LRCYALYLA---GEKRKEEEMIELEGPLGKSDAVNRELISLE 162 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~-----l~~y~~yl~---~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~ 162 (558)
+.+-...++|...|.+.+|+.+|+++....+.| +... ..+. .+.++.. ...
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl-Li~tAIkaD~~Rv~--------------------eyI 1044 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL-LILTAIKADRTRVM--------------------EYI 1044 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH-HHHHHHHhChhhHH--------------------HHH
Confidence 466778999999999999999999985322211 1110 0000 0111111 111
Q ss_pred HHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHH----HhhcCCCCchHHHH
Q 048034 163 RELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTID----ILNSINLNNHWMKD 238 (558)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~ 238 (558)
..++. ...-..|.++...|.+++|..+|+++- .+..+...+...+...+ ....+..+.-|
T Consensus 1045 ~kLd~---------~d~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aervn~p~vW--- 1108 (1630)
T 1xi4_A 1045 NRLDN---------YDAPDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERCNEPAVW--- 1108 (1630)
T ss_pred HHhhh---------ccHHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHH---
Confidence 11111 112337899999999999999999973 23333333322222222 23333344444
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCC
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKEC 318 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~ 318 (558)
+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|+|++|+++|..+.+..+.. ..-..++.++.++++
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcC
Confidence 45699999999999999999886 778899999999999999999999999999887543 223357888888888
Q ss_pred HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH
Q 048034 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM 398 (558)
Q Consensus 319 ~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 398 (558)
.++..... ...+...+..+|..+...|+|++|+.+|.++- .|..+|.+|.+
T Consensus 1183 leele~fI------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1183 LAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVH 1233 (1630)
T ss_pred HHHHHHHH------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHH
Confidence 87655443 23344667789999999999999999999961 38889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 048034 399 MHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY 478 (558)
Q Consensus 399 ~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 478 (558)
+|++++|++.+++| .+..+|...+.++.. .|++..|..+... +..+ +..+..++..|...|.+++|+.+
T Consensus 1234 Lge~q~AIEaarKA-----~n~~aWkev~~acve--~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA-----NSTRTWKEVCFACVD--GKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred hCCHHHHHHHHHHh-----CCHHHHHHHHHHHhh--hhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998 456788888888877 7888888777764 3333 34455777778888888888888
Q ss_pred HHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHhccC
Q 048034 479 YKKDLERMEAEEREGPNMVEALIFLATHCRAH--NRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 479 ~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~ 527 (558)
+++++. .++.+...+..+|.++.+- ++..++.++|...+.+.
T Consensus 1303 lE~aL~-------LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1303 LEAALG-------LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHHHhc-------cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 888776 5566666666666666543 56667777777666653
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=1.6e-19 Score=172.27 Aligned_cols=220 Identities=10% Similarity=-0.041 Sum_probs=170.4
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGF------SNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
|.++...|++++|+..|.+++...+. ...++..+|.++...|++++|+.+|++++++.|...
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g------------ 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG------------ 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------
Confidence 66788999999999999999987532 256888999999999999999999999998765431
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc-CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK-GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQ 394 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~ 394 (558)
+...+ ..++..+|.+|... |++++|+.+|++++++.|...... ....++..+|.
T Consensus 112 --~~~~~--------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~---------~~~~~~~~lg~ 166 (292)
T 1qqe_A 112 --QFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA---------LSNKCFIKCAD 166 (292)
T ss_dssp --CHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHH
T ss_pred --CHHHH--------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH---------HHHHHHHHHHH
Confidence 11111 35778899999996 999999999999999987542110 01357889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH-----HHHHH
Q 048034 395 AYEMMHMPFYALHYFRKSVFLQPNDSR-------LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI-----ALNQL 462 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~l 462 (558)
++..+|++++|+.+|++++.+.|++.. .+..+|.++.. +|++++|+.+|++++.++|+... .+..+
T Consensus 167 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA--ATDAVAAARTLQEGQSEDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH--TTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 999999999999999999999987653 67899999999 99999999999999999998655 34556
Q ss_pred HHHHH--HcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 463 AKLHH--ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 463 a~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
+..+. ..+++++|+..|++++. .+|....++..+-...
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~~-------l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFMR-------LDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSC-------CCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhccCCc-------cHHHHHHHHHHHHHHh
Confidence 66664 45678999998888776 5666555555444433
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=4.7e-20 Score=156.98 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=133.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 048034 342 IIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 342 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
.||.++...|++++|+..+++++..+|+ ++..++.+|.+|...|++++|+.+|+++++++|+++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~ 66 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK 66 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3789999999999999999999998887 3456889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHHHhhhhcCCChHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFY-YKKDLERMEAEEREGPNMVEAL 500 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~~~~~~ 500 (558)
+|..+|.+|.. .|++++|+.+|+++++++|+++.+++.+|.++.+.|++++|... ++++++ .+|+++.++
T Consensus 67 a~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-------l~P~~~~~~ 137 (150)
T 4ga2_A 67 AHRFLGLLYEL--EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-------LFPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-------HSTTCHHHH
T ss_pred HHHHHHHHHHH--cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------hCcCCHHHH
Confidence 99999999999 99999999999999999999999999999999999999887765 589998 689999999
Q ss_pred HHHHHHHHHcCC
Q 048034 501 IFLATHCRAHNR 512 (558)
Q Consensus 501 ~~la~~~~~~g~ 512 (558)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999998886
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=6e-19 Score=155.58 Aligned_cols=172 Identities=16% Similarity=0.104 Sum_probs=159.6
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
....+..+|.++...|++++|+..|++++..+|.+. .+++.+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV---------------DVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356788899999999999999999999999988754 46889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 416 QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 416 ~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
.|.++.++..+|.++.. .|++++|+..+++++...|.++.++..+|.++...|++++|+.+++++++ ..|.
T Consensus 72 ~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~~ 142 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQ--VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG-------LRPN 142 (186)
T ss_dssp CTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTT
T ss_pred CCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-------cCcc
Confidence 99999999999999999 99999999999999999999999999999999999999999999999998 5678
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 496 MVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 496 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
++.++..+|.++...|++++|..+++++++.+|.+.
T Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 899999999999999999999999999998876543
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=2.5e-19 Score=191.08 Aligned_cols=200 Identities=15% Similarity=-0.058 Sum_probs=178.1
Q ss_pred HcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHh--------hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCc
Q 048034 297 RNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVF--------TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNK 368 (558)
Q Consensus 297 ~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~--------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 368 (558)
..+|.++.+....+ ...+++++|...+++++ ..+|.++.+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35777777666555 77899999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 369 NYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
++. .+|+.+|.++...|++++|+..|+++++++|+++.++.++|.++.. .|++++ +..|+++
T Consensus 465 ~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~--~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 465 WRW---------------RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL--AGNTDE-HKFYQTV 526 (681)
T ss_dssp CCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH--HTCCCT-TCHHHHH
T ss_pred chH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCChHH-HHHHHHH
Confidence 854 5789999999999999999999999999999999999999999999 999999 9999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCC--------HHHHHHHH
Q 048034 449 ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNR--------FEDAEVYC 520 (558)
Q Consensus 449 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~ 520 (558)
++++|++..+++++|.++..+|++++|+..|+++++ .+|.+..+++.+|.++...|+ +++|...+
T Consensus 527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP-------TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT-------TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc-------cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 789999999999999977665 45555554
Q ss_pred HHHh
Q 048034 521 TRLL 524 (558)
Q Consensus 521 ~~al 524 (558)
.++.
T Consensus 600 ~~~~ 603 (681)
T 2pzi_A 600 EALP 603 (681)
T ss_dssp HTSC
T ss_pred hhCC
Confidence 4443
No 85
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.82 E-value=8.9e-18 Score=158.72 Aligned_cols=233 Identities=12% Similarity=0.004 Sum_probs=186.7
Q ss_pred CChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHh--chHHHHHHHHHHHhhcCC
Q 048034 190 GSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELR--MHNEALTKYEYLQGTFGF 267 (558)
Q Consensus 190 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~p~ 267 (558)
...++|+..+.++|.++|.+..+|... +.++..+| ++++++..++.++..+|.
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R-------------------------~~~L~~l~~~~~~eeL~~~~~~L~~nPk 101 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYR-------------------------FNILKNLPNRNLYDELDWCEEIALDNEK 101 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHTCTTSCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHH-------------------------HHHHHHcccccHHHHHHHHHHHHHHCcc
Confidence 344689999999999999999999775 77888888 999999999999999999
Q ss_pred ChHHHHHHHHHH----HHc---ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh--HHHHHHHHHhhcCCCChh
Q 048034 268 SNYLQAQIAKAQ----YSL---REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS--ALSYLAHRVFTTDKYRPE 338 (558)
Q Consensus 268 ~~~~~~~~a~~~----~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~--~a~~l~~~~~~~~~~~~~ 338 (558)
+..+|...+.++ ... +++++++.++.++++.+|.+..++...+.++...+.++ +......+++..+|.+..
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s 181 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS 181 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence 999999999988 666 78999999999999999999888887777777777776 777777777788888888
Q ss_pred HHHHHHHHHhhcCC------hHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHH-HHHHHHH
Q 048034 339 SCCIIGNYYSLKGQ------HEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFY-ALHYFRK 411 (558)
Q Consensus 339 ~~~~lg~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~-A~~~~~~ 411 (558)
+|...+.+....++ +++++.++.+++..+|++.+ +|+.++.++...|+... ...++.+
T Consensus 182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S---------------aW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS---------------TWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH---------------HHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc---------------HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 88888888777776 78888888888888877554 56667777777777544 4446666
Q ss_pred HHhcC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHH
Q 048034 412 SVFLQ---PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-CNDSEAIALNQLAK 464 (558)
Q Consensus 412 a~~~~---p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~ 464 (558)
++.+. |.++.++..++.++.. .|+.++|+++|+++.. .+|.....|...+.
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~--~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQ--QKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 66655 7777888888888877 8888888888888775 67877777766654
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=6.5e-19 Score=166.71 Aligned_cols=240 Identities=13% Similarity=0.101 Sum_probs=181.4
Q ss_pred HHHhchHHHHHHHHHHHhh--------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcC
Q 048034 246 QELRMHNEALTKYEYLQGT--------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKE 317 (558)
Q Consensus 246 ~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 317 (558)
...|++++|+..|+++++. .|....++..+|.++...|++++|+.+|+++++......
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------- 77 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-------------- 77 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc--------------
Confidence 3456677777777777663 245677889999999999999999999999987531000
Q ss_pred CHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC-----cCCHHHHHHhchhccccchHHHHHh
Q 048034 318 CFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN-----KNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 318 ~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
-...|..+.++..+|.++...|++++|+.+|++++.+. ++++. ...++..+
T Consensus 78 ------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~l 133 (283)
T 3edt_B 78 ------------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD------------VAKQLNNL 133 (283)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------HHHHHHHH
T ss_pred ------------CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH------------HHHHHHHH
Confidence 00122336788999999999999999999999999873 22222 45689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCc
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFL--------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC---------NDSE 455 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~---------~~~~ 455 (558)
|.+|...|++++|+.+|++++.+ .|....++..+|.++.. .|++++|+.+|++++.. .+..
T Consensus 134 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 211 (283)
T 3edt_B 134 ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK--QGKYQDAETLYKEILTRAHEKEFGSVNGDN 211 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHSSSCCSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCcchhH
Confidence 99999999999999999999998 66678899999999999 99999999999999986 3444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
...+..++..+...+....+.. +..+...........+....++..+|.++...|++++|..+|+++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 212 KPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5577777777776555444433 444444343333355777889999999999999999999999999975
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.79 E-value=2.1e-19 Score=152.89 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=124.0
Q ss_pred HHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChH
Q 048034 275 IAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHE 354 (558)
Q Consensus 275 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 354 (558)
+|.++...|++++|+..+++++..+ |.++..++.+|.+|...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~----------------------------------p~~~~~~~~la~~y~~~~~~~ 48 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP----------------------------------RQKSIKGFYFAKLYYEAKEYD 48 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH----------------------------------HHHHTTHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC----------------------------------cccHHHHHHHHHHHHHcCCHH
Confidence 4556666666666666666665544 444778889999999999999
Q ss_pred HHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 048034 355 KSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQ 434 (558)
Q Consensus 355 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 434 (558)
+|+.+|+++++++|++. .+|+.+|.+|...|++++|+.+|+++++++|+++.++..+|.++..
T Consensus 49 ~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 111 (150)
T 4ga2_A 49 LAKKYICTYINVQERDP---------------KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-- 111 (150)
T ss_dssp HHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Confidence 99999999999999855 4788999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 048034 435 LHMLEEAIKC-YRRAANCNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 435 ~~~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~g~ 471 (558)
.|++++|... ++++++++|+++.++..++.++...|+
T Consensus 112 ~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 112 NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999887776 589999999999999999999988875
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.78 E-value=2.3e-17 Score=150.92 Aligned_cols=191 Identities=16% Similarity=0.087 Sum_probs=150.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCH---HHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNW---NSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
++..+|.+|..+...|++++|+..|++++..+|.+. .++..+ |.++...|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l-------------------------g~~~~~~~~~ 57 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDL-------------------------IYAYYKNADL 57 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH-------------------------HHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH-------------------------HHHHHhcCCH
Confidence 567899999999999999999999999999999764 456555 9999999999
Q ss_pred HHHHHHHHHHHhhcCCChH---HHHHHHHHHHH------------------cccHHHHHHHHHHHHHcCCCCcchHHHHH
Q 048034 252 NEALTKYEYLQGTFGFSNY---LQAQIAKAQYS------------------LREFEQVEVVFEELLRNDPYRVEDMDMYS 310 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 310 (558)
++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|+++++.+|++..+...+.
T Consensus 58 ~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~ 137 (225)
T 2yhc_A 58 PLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK 137 (225)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 9999999999999999874 78889998886 57899999999999999998876554433
Q ss_pred HHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 311 NVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 311 ~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
.+....+. .......+|.+|...|++++|+..|+++++..|+++. ...+++
T Consensus 138 ~l~~~~~~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~ 188 (225)
T 2yhc_A 138 RLVFLKDR-----------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA------------TRDALP 188 (225)
T ss_dssp HHHHHHHH-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH------------HHHHHH
T ss_pred HHHHHHHH-----------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc------------cHHHHH
Confidence 22111110 1223456788888888888888888888888877543 235677
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPND 419 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~ 419 (558)
.+|.+|..+|++++|+..++++....|++
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 88888888888888888888877777664
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=6.8e-18 Score=152.33 Aligned_cols=186 Identities=11% Similarity=-0.053 Sum_probs=152.4
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHH
Q 048034 175 DPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEA 254 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 254 (558)
++..++..|..+...|++++|+..|.+++..+|.+..+|..++.... ........+.+|.++...|++++|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A 73 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKN---------SEISSKLATELALAYKKNRNYDKA 73 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTT---------SHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcch---------hhhhHHHHHHHHHHHHHCCCHHHH
Confidence 45678899999999999999999999999999999999877321100 000111123369999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCH--hHHHHHHHHHhhc
Q 048034 255 LTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECF--SALSYLAHRVFTT 332 (558)
Q Consensus 255 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~--~~a~~l~~~~~~~ 332 (558)
+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.+++..+.. ..+...+.+++..
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 153 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999877643 3445555554432
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCC
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNY 370 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (558)
.| ...+++.+|.++...|++++|+.+|+++++++|+.
T Consensus 154 ~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 154 TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 22 23467889999999999999999999999999983
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=1.4e-17 Score=146.70 Aligned_cols=174 Identities=11% Similarity=0.066 Sum_probs=166.1
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNE 253 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 253 (558)
.....++.+|.++...|++++|+..|.+++..+|.+..++..+ |.++...|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~ 60 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHL-------------------------GIAYVKTGAVDR 60 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHH-------------------------HHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHH-------------------------HHHHHHcCCHHH
Confidence 3456789999999999999999999999999999998888877 999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC
Q 048034 254 ALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD 333 (558)
Q Consensus 254 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 333 (558)
|+..++++++..|.+..++..+|.++...|++++|+..+++++..+|.+...+..++.++...|+++++...+++++...
T Consensus 61 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS 372 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (558)
|.++.++..+|.++...|++++|+.+++++++.+|++..
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999999999999999999999888653
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.78 E-value=2.7e-17 Score=150.39 Aligned_cols=198 Identities=13% Similarity=0.053 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcc---hHHHHHH
Q 048034 238 DFFLASTYQELRMHNEALTKYEYLQGTFGFSN---YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVE---DMDMYSN 311 (558)
Q Consensus 238 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~ 311 (558)
.+.+|..+...|++++|+..|++++...|.++ .+++.+|.+++..|++++|+..|+++++.+|.+.. ++..++.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 34459999999999999999999999988874 68999999999999999999999999999999875 5666666
Q ss_pred HHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc--ccchHHH
Q 048034 312 VLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK--SIDYRAW 389 (558)
Q Consensus 312 ~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~--~~~~~~~ 389 (558)
++...+.. ....+..++..+...|++++|+..|+++++..|++..++........ .......
T Consensus 87 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 87 TNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp HHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 66654421 12334556777778899999999999999999997654322110000 0001112
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
+.+|.+|...|++++|+..|+++++..|+++ .++..+|.++.. +|++++|+..++++....|
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~--~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ--MQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH--cCCcHHHHHHHHHHHhhCC
Confidence 3344444444444444444444444444433 234444444444 4444444444444444333
No 92
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=7.4e-16 Score=146.25 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=192.6
Q ss_pred HhcCChH-HHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhc----------hHHHH
Q 048034 187 KDKGSEN-LARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRM----------HNEAL 255 (558)
Q Consensus 187 ~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~A~ 255 (558)
.+.|.++ +|+.++.+++..+|.+..+|... +.+....+. +++++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~R-------------------------r~iL~~l~~~~~~~~~~~~l~~EL 94 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCR-------------------------REVLQHLETEKSPEESAALVKAEL 94 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHH-------------------------HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHH-------------------------HHHHHHhcccccchhhhHHHHHHH
Confidence 3556665 89999999999999999999876 444444443 68899
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHccc--HHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcC
Q 048034 256 TKYEYLQGTFGFSNYLQAQIAKAQYSLRE--FEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTD 333 (558)
Q Consensus 256 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~ 333 (558)
..++.++..+|.+..+|...+.++...++ +++++.++.++++.+|.+
T Consensus 95 ~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN------------------------------- 143 (331)
T 3dss_A 95 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN------------------------------- 143 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------------------------------
Confidence 99999999999999999999999999884 889999999998888877
Q ss_pred CCChhHHHHHHHHHhhcCC-hHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc-------------
Q 048034 334 KYRPESCCIIGNYYSLKGQ-HEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM------------- 399 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~------------- 399 (558)
..+|...+.+....|. +++++.++.+++..+|.+..+ |...+.++...
T Consensus 144 ---y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SA---------------W~~R~~ll~~l~~~~~~~~~~~~~ 205 (331)
T 3dss_A 144 ---FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS---------------WHYRSCLLPQLHPQPDSGPQGRLP 205 (331)
T ss_dssp ---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHH---------------HHHHHHHHHHHSCCC------CCC
T ss_pred ---HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhhhccccccccccc
Confidence 5677778888888888 589999999999999997765 45555555544
Q ss_pred -CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 400 -HMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL-----------HMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 400 -~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
+.+++++.++.+++..+|+|..+|+.+..++.. . +.++++++++++++++.|++..++..++.+..
T Consensus 206 ~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~--~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~ 283 (331)
T 3dss_A 206 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA--GSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 283 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS--SSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHH
Confidence 468899999999999999999999877777665 4 46899999999999999999766655554433
Q ss_pred ---HcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 468 ---ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 468 ---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
..|..++...++.+.++ .+|....-|..++.-+
T Consensus 284 ~~~~~~~~~~~~~~l~~l~~-------~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 284 ALDPLLYEKETLQYFSTLKA-------VDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHCTTTTHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHH-------hCcchhhHHHHHHHHH
Confidence 35778899999999988 6787777766665544
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.77 E-value=3.3e-18 Score=161.81 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=176.6
Q ss_pred HhcCChHHHHHHHHHHhhhC--------CCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 187 KDKGSENLARTVLVESVNSY--------PWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 187 ~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
...|++++|+..|++++... |....++ +.+|.++...|++++|+..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~ 66 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATML-------------------------NILALVYRDQNKYKEAAHLL 66 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHH-------------------------HHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH-------------------------HHHHHHHHHcccHHHHHHHH
Confidence 45788899999999988742 2233333 34599999999999999999
Q ss_pred HHHHhhc--------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHh
Q 048034 259 EYLQGTF--------GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVF 330 (558)
Q Consensus 259 ~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~ 330 (558)
++++... |....++..+|.++...|++++|+.+|++++....... -
T Consensus 67 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------~ 120 (283)
T 3edt_B 67 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL--------------------------G 120 (283)
T ss_dssp HHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH--------------------------C
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc--------------------------C
Confidence 9999863 45567889999999999999999999999987521000 0
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC-----cCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN-----KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYA 405 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 405 (558)
..+|....++..+|.++...|++++|+.+|++++.+. ++.+ ....++..+|.+|...|++++|
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP------------NVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH------------HHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHHHHcCCHHHH
Confidence 0123336788999999999999999999999999871 2221 2456789999999999999999
Q ss_pred HHHHHHHHhc---------CCCCHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 048034 406 LHYFRKSVFL---------QPNDSRLWIAMAQCYETEQLHM------LEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470 (558)
Q Consensus 406 ~~~~~~a~~~---------~p~~~~~~~~la~~~~~~~~~~------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 470 (558)
+.+|++++.+ .+.....|..++..+.. .+. +.++...++......|....++..+|.+|...|
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES--KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT--TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999986 45566677777777765 444 444444454444445667779999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 048034 471 RDEEAAFYYKKDLE 484 (558)
Q Consensus 471 ~~~~A~~~~~~al~ 484 (558)
++++|+.+|+++++
T Consensus 267 ~~~~A~~~~~~al~ 280 (283)
T 3edt_B 267 KLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999986
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.77 E-value=4.6e-16 Score=147.67 Aligned_cols=236 Identities=12% Similarity=-0.012 Sum_probs=190.0
Q ss_pred HHHhchH-HHHHHHHHHHhhcCCChHHHHHHHHHHHHccc----------HHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 246 QELRMHN-EALTKYEYLQGTFGFSNYLQAQIAKAQYSLRE----------FEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 246 ~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
...|.++ +|+..+.+++..+|++..+|...+.++...+. +++++.++..++..+|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------------- 105 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------------- 105 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--------------
Confidence 3455554 78888888988889888888888888877665 4555555555555554
Q ss_pred hcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCC--hHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHh
Q 048034 315 AKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQ--HEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 315 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
.+..+|...+.++...++ +++++.++.++++.+|.+. .+|...
T Consensus 106 --------------------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy---------------~AW~~R 150 (331)
T 3dss_A 106 --------------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---------------HCWDYR 150 (331)
T ss_dssp --------------------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH---------------HHHHHH
T ss_pred --------------------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH---------------HHHHHH
Confidence 557888889999888884 8999999999999999955 467788
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCcHH
Q 048034 393 GQAYEMMHM-PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL--------------HMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 393 g~~~~~~~~-~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~--------------~~~~~A~~~~~~al~~~~~~~~ 457 (558)
+.+....|. +++++.++.+++..+|.|..+|..++.++.. . +.++++++++.+++..+|++..
T Consensus 151 ~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~--l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S 228 (331)
T 3dss_A 151 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ--LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 228 (331)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH--HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 888888888 5999999999999999999999999999988 7 5699999999999999999999
Q ss_pred HHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH---HcCCHHHHHHHHHHH
Q 048034 458 ALNQLAKLHHAL-----------GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR---AHNRFEDAEVYCTRL 523 (558)
Q Consensus 458 ~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a 523 (558)
+|+.+..++... +.+++++++++++++ ..|++.-++..++.+.. ..|..++...++.++
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle-------~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE-------LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh-------hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 998776666555 356788888888887 67887655555544432 357889999999999
Q ss_pred hccCCCcHHHHHHHHH
Q 048034 524 LDYTGPEKETAKSMLR 539 (558)
Q Consensus 524 l~~~~~~~~~~~~ll~ 539 (558)
.++||-....+..+-.
T Consensus 302 ~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 302 KAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHCGGGHHHHHHHHH
T ss_pred HHhCcchhhHHHHHHH
Confidence 9999888777655544
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.76 E-value=6e-18 Score=139.03 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=112.9
Q ss_pred HhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHH
Q 048034 329 VFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHY 408 (558)
Q Consensus 329 ~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 408 (558)
+..++|..++.+..+|+.|+..|++++|+.+|+++++++|.+. .+|+.+|.+|..+|++++|+..
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~~~~~~~~~~~~~A~~~ 69 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---------------ILYSNRAACLTKLMEFQRALDD 69 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHhhHHHhhccHHHHHHH
Confidence 3457888899999999999999999999999999999999855 5788999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 409 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 409 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
|+++++++|+++.+|..+|.++.. +|++++|+.+|+++++++|++..++..++.++
T Consensus 70 ~~~al~~~p~~~~a~~~lg~~~~~--~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 70 CDTCIRLDSKFIKGYIRKAACLVA--MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999 99999999999999999999999999998764
No 96
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.3e-18 Score=169.46 Aligned_cols=305 Identities=10% Similarity=-0.003 Sum_probs=140.7
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCC--------CCchHHHHHHHHHHH
Q 048034 174 MDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSIN--------LNNHWMKDFFLASTY 245 (558)
Q Consensus 174 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~--------~~~~~~~~~~~a~~~ 245 (558)
++|.+|..+|.++...|++++|++.|.++ .+...+..++..+...+..+.+. ...+......++.+|
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 34568999999999999999999999774 34556666633332222211110 000011111234445
Q ss_pred HHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHH
Q 048034 246 QELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYL 325 (558)
Q Consensus 246 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l 325 (558)
.+.|++.++.+.++. | +...+..+|..++..|.|++|..+|.++ ..+..++.++..+|++++|...
T Consensus 105 ~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 105 AKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ----CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHH
Confidence 555555554444421 2 2235555555555555555555555544 3445555555555555555555
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHH
Q 048034 326 AHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYA 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 405 (558)
++++ .++.+|..++.++...|+++.|..+... +...| .-...++..|.+.|++++|
T Consensus 171 ~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a------------------d~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 171 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA------------------DELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH------------------HHHHHHHHHHHHTTCHHHH
T ss_pred HHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH------------------hhHHHHHHHHHHCCCHHHH
Confidence 5554 2455555555555555555555444443 22222 2344577899999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 406 LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND-----SEAIALNQLAKLHHALGRDEEAAFYYK 480 (558)
Q Consensus 406 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 480 (558)
+.++++++.+++....+|..+|.+|.+...++..+.++.|...+.+.| .+...|..+..+|...++++.|+..+-
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 999999999999999999999999987557788888888888777777 667789999999999999999998665
Q ss_pred HHHH------HHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 481 KDLE------RMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 481 ~al~------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
.... .+.+.. ..+.+.+.++.....|. ++...++..+-.++
T Consensus 307 ~h~~~a~~~~~f~~~~-~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 307 NHPTDAWKEGQFKDII-TKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HSTTTTCCHHHHHHHH-HHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred hCChhhhhhHHHHHHH-hchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 4321 011100 13555666666666665 33334444444444
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.75 E-value=9.1e-18 Score=147.18 Aligned_cols=168 Identities=13% Similarity=-0.050 Sum_probs=128.4
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
|...+.++.+|..+...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|++++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG---------------DVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH---------------HHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 33445677788888888888888888888888888744 467788888888888888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 493 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 493 (558)
...| ++..+..++.+.... .+...+|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++ ..
T Consensus 68 ~~~p-~~~~~~~~~~~~~~~-~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~ 138 (176)
T 2r5s_A 68 LEYQ-DNSYKSLIAKLELHQ-QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK-------VN 138 (176)
T ss_dssp GGGC-CHHHHHHHHHHHHHH-HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TC
T ss_pred hccC-ChHHHHHHHHHHHHh-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------hC
Confidence 8888 777666666553320 23344578888888888888888888888888888888888888888887 45
Q ss_pred CCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 494 PNM--VEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 494 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
|.. ..++..+|.++...|+.++|...|++++.
T Consensus 139 p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 139 LGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 543 56888888888888888888888888764
No 98
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=2.5e-16 Score=150.01 Aligned_cols=242 Identities=12% Similarity=0.002 Sum_probs=191.3
Q ss_pred HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR-EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLA 326 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~ 326 (558)
.+..++|+..+++++..+|++..+|...+.++...| .+++++..+++++..+|.+
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn------------------------ 122 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS------------------------ 122 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC------------------------
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc------------------------
Confidence 344567888888888888888888888888888888 4888888888888777766
Q ss_pred HHHhhcCCCChhHHHHHHHHHhhc-C-ChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHH-
Q 048034 327 HRVFTTDKYRPESCCIIGNYYSLK-G-QHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPF- 403 (558)
Q Consensus 327 ~~~~~~~~~~~~~~~~lg~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~- 403 (558)
..+|...+.++... + ++++++.++.+++..+|++.. +|...+.+....|.++
T Consensus 123 ----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~---------------AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 123 ----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH---------------TWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp ----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH---------------HHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHhccccc
Confidence 67888888888877 7 899999999999999998655 5667777777777776
Q ss_pred -------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 404 -------YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM-------LEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 404 -------~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
+++.+++++++.+|.|..+|...+.++.. .++ ++++++++++++..+|++..+|+.+..++...
T Consensus 178 ~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~--l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS--RPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT--STTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998 887 79999999999999999999999999999988
Q ss_pred CCHHH----------------HH-HHHHHHHHHHHhh--hhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCC
Q 048034 470 GRDEE----------------AA-FYYKKDLERMEAE--EREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLL-DYTGP 529 (558)
Q Consensus 470 g~~~~----------------A~-~~~~~al~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~ 529 (558)
|+... .. ..-+.+++..... ....+..+.++..||.+|...|+.++|.++++.+. +.||-
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 87510 11 1111122111100 01225778899999999999999999999999987 67877
Q ss_pred cHHHHHHHHHH
Q 048034 530 EKETAKSMLRG 540 (558)
Q Consensus 530 ~~~~~~~ll~~ 540 (558)
...-+.-..+.
T Consensus 336 r~~yw~~~~~~ 346 (349)
T 3q7a_A 336 RAGYWEFRRRE 346 (349)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77666544443
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.73 E-value=5.6e-17 Score=133.18 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=109.4
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
....+..+|..|+..|++++|+.+|+++++++|.++.+|.++|.++.. +|++++|+..|+++++++|+++.+++.+|.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK--LMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh--hccHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 556789999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
++..+|++++|+..|+++++ .+|++..++..++.++
T Consensus 90 ~~~~~~~~~~A~~~~~~al~-------l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ-------VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHHHHH-------HCcCCHHHHHHHHHhc
Confidence 99999999999999999999 6899999999998764
No 100
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=6.5e-18 Score=164.45 Aligned_cols=260 Identities=12% Similarity=0.060 Sum_probs=93.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHh
Q 048034 184 LVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQG 263 (558)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 263 (558)
......|+.++|.+++++. .++.+|..| |.++.+.|++++|++.|.++
T Consensus 11 ~ll~~~~~ld~A~~fae~~-----~~~~vWs~L-------------------------a~A~l~~g~~~eAIdsfika-- 58 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-----NEPAVWSQL-------------------------AKAQLQKGMVKEAIDSYIKA-- 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-----CChHHHHHH-------------------------HHHHHHcCCHHHHHHHHHcC--
Confidence 3445778899999999998 234588877 77788888888888877653
Q ss_pred hcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHH
Q 048034 264 TFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCII 343 (558)
Q Consensus 264 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~l 343 (558)
.++..+..++.++...|++++|+.+++.+++..++ +.....++.++..+|++.++..+++. | +..+|..+
T Consensus 59 ---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~I 128 (449)
T 1b89_A 59 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQV 128 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTTC-----C---------
T ss_pred ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHH
Confidence 34456667777777788888888877777764333 44555666677777777776655532 3 33477788
Q ss_pred HHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 048034 344 GNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW 423 (558)
Q Consensus 344 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 423 (558)
|..+...|++++|+.+|.++ + .|..+|.++.++|++++|+..|+++ +++.+|
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a----~-------------------n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~W 180 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV----S-------------------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTW 180 (449)
T ss_dssp --------CTTTHHHHHHHT----T-------------------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh----h-------------------hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhH
Confidence 88888888888888888765 1 2667777777888888888777777 367777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHH
Q 048034 424 IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFL 503 (558)
Q Consensus 424 ~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 503 (558)
...+.++.. .|+++.|..+... +...|+ -...++.+|.+.|++++|+.++++++. .++....++..+
T Consensus 181 k~v~~aCv~--~~ef~lA~~~~l~-L~~~ad---~l~~lv~~Yek~G~~eEai~lLe~aL~-------le~ah~~~ftel 247 (449)
T 1b89_A 181 KEVCFACVD--GKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGYFEELITMLEAALG-------LERAHMGMFTEL 247 (449)
T ss_dssp HHHHHHHHH--TTCHHHHHHTTTT-TTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTT-------STTCCHHHHHHH
T ss_pred HHHHHHHHH--cCcHHHHHHHHHH-HHhCHh---hHHHHHHHHHHCCCHHHHHHHHHHHhC-------CcHHHHHHHHHH
Confidence 777777777 7777777666654 223333 344566777777777777777777766 445556666666
Q ss_pred HHHHHHc--CCHHHHHHHHHHHhcc
Q 048034 504 ATHCRAH--NRFEDAEVYCTRLLDY 526 (558)
Q Consensus 504 a~~~~~~--g~~~~A~~~~~~al~~ 526 (558)
|.+|.+- ++..+.++.|...+.+
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSRVNI 272 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTSCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 6555443 3445555555444444
No 101
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.73 E-value=1.4e-15 Score=144.77 Aligned_cols=243 Identities=14% Similarity=0.032 Sum_probs=194.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHh-chHHHHHHHHH
Q 048034 182 YGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELR-MHNEALTKYEY 260 (558)
Q Consensus 182 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~ 260 (558)
+..+....+..++|+..+.+++..+|.+..+|... +.++...| .+++++..++.
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R-------------------------~~iL~~l~~~l~eEL~~~~~ 114 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYR-------------------------FSLLTSLNKSLEDELRLMNE 114 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHH-------------------------HHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHH-------------------------HHHHHHhhhhHHHHHHHHHH
Confidence 34444556667899999999999999999999776 78888888 59999999999
Q ss_pred HHhhcCCChHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChh
Q 048034 261 LQGTFGFSNYLQAQIAKAQYSL-R-EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPE 338 (558)
Q Consensus 261 ~~~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~ 338 (558)
++..+|++..+|...+.++... + ++++++.++.++++.+|.+. .
T Consensus 115 ~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy----------------------------------~ 160 (349)
T 3q7a_A 115 FAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY----------------------------------H 160 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH----------------------------------H
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH----------------------------------H
Confidence 9999999999999999999998 7 88899999999988888774 5
Q ss_pred HHHHHHHHHhhcCChH--------HHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC-------HH
Q 048034 339 SCCIIGNYYSLKGQHE--------KSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM-------PF 403 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~-------~~ 403 (558)
+|...+.+....|.++ +++.++.++++.+|.+.. +|...+.++...+. ++
T Consensus 161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S---------------AW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS---------------AWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHhccccccchHHHH
Confidence 5666666666666555 999999999999999665 57777777777776 78
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCcHH
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML--------------------EEAIKCYRRAANCN------DSEAI 457 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~--------------------~~A~~~~~~al~~~------~~~~~ 457 (558)
+++.++++++..+|+|..+|+.+..++.. .|+. .+-.......+... +..+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKH--FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHh--cCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 99999999999999999999999999988 7764 22222222222222 46778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
++..++.+|...|+.++|+++++...+. .+|-....|.+.+..
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~------~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSE------YDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh------hChHHHHHHHHHHHh
Confidence 9999999999999999999999998752 567777777766543
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.73 E-value=9.8e-17 Score=152.40 Aligned_cols=168 Identities=13% Similarity=-0.023 Sum_probs=142.7
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
|.++..++.+|..+...|++++|+..|++++..+|++. .+++.+|.++...|++++|+..|++++
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---------------EIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---------------HHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---------------hHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 66678888888888899999999999999999888854 467888888899999999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 493 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 493 (558)
..+|+....+...+..+.. .++.++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++ .+
T Consensus 179 ~~~p~~~~~~~~~~~~l~~--~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~-------~~ 249 (287)
T 3qou_A 179 LQDQDTRYQGLVAQIELLX--QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR-------XD 249 (287)
T ss_dssp GGGCSHHHHHHHHHHHHHH--HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HC
T ss_pred hhhcchHHHHHHHHHHHHh--hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-------cc
Confidence 8888766666667777777 88888888999999999999999999999999999999999999999888 56
Q ss_pred CCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 494 PNM--VEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 494 ~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
|+. ..++..++.++...|+.++|...|++++.
T Consensus 250 p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 250 LTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 666 78888899999999998899888888764
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.72 E-value=1.4e-17 Score=140.94 Aligned_cols=119 Identities=13% Similarity=-0.017 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL 483 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 483 (558)
.+-..+++++.++|+++.+++.+|.++.. .|++++|+.+|++++.++|.++.+|+.+|.++..+|++++|+..|++++
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~--~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYN--KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34456778888999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 484 ERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
+ .+|+++.+++++|.++...|++++|+.+|++++++.|+..
T Consensus 98 ~-------l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 A-------LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp H-------HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred h-------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8 6788899999999999999999999999999999876543
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=3e-16 Score=149.05 Aligned_cols=169 Identities=12% Similarity=0.052 Sum_probs=151.8
Q ss_pred cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHH
Q 048034 265 FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIG 344 (558)
Q Consensus 265 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg 344 (558)
.|.+...+..+|..+...|++++|+..|+++++.+|++ +.+++.+|
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~----------------------------------~~a~~~la 158 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN----------------------------------GEIGLLLA 158 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC----------------------------------HHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc----------------------------------hhHHHHHH
Confidence 48888899999999999999999999999999988876 56788899
Q ss_pred HHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 048034 345 NYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWI 424 (558)
Q Consensus 345 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 424 (558)
.++...|++++|+..+++++..+|+.. ..+...+..+...++.++|+..|++++..+|+++.+++
T Consensus 159 ~~~~~~g~~~~A~~~l~~~~~~~p~~~---------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~ 223 (287)
T 3qou_A 159 ETLIALNRSEDAEAVLXTIPLQDQDTR---------------YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALAT 223 (287)
T ss_dssp HHHHHTTCHHHHHHHHTTSCGGGCSHH---------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCchhhcchH---------------HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHH
Confidence 999999999999999999999988632 24556677778888899999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 425 AMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 425 ~la~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.+|.++.. .|++++|+..|++++..+|++ ..++..++.++...|+.++|+..|++++.
T Consensus 224 ~la~~l~~--~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 224 QLALQLHQ--VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH--cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999 999999999999999999988 88999999999999999999999999886
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.71 E-value=1.4e-16 Score=139.58 Aligned_cols=161 Identities=12% Similarity=0.020 Sum_probs=124.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccc
Q 048034 306 MDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSID 385 (558)
Q Consensus 306 ~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 385 (558)
....+..+...|+++++...+++++..+|.++.+++.+|.++...|++++|+..|++++..+| ++..+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~----------- 76 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYK----------- 76 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHH-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHH-----------
Confidence 333344444444444444444444444555578899999999999999999999999999988 65432
Q ss_pred hHHHHHhHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHH
Q 048034 386 YRAWYGLGQAY-EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQL 462 (558)
Q Consensus 386 ~~~~~~lg~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l 462 (558)
..++.+. ...+....|+..|+++++.+|+++.+++.+|.++.. .|++++|+..|+++++.+|+. +.++..+
T Consensus 77 ----~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 77 ----SLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ--VGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp ----HHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred ----HHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 2222221 222334458999999999999999999999999999 999999999999999999875 5699999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 048034 463 AKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 463 a~~~~~~g~~~~A~~~~~~al~ 484 (558)
|.++..+|+.++|+..|++++.
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999886
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=2.5e-16 Score=151.31 Aligned_cols=232 Identities=9% Similarity=-0.007 Sum_probs=167.2
Q ss_pred HHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHH-cccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHH
Q 048034 247 ELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYS-LREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYL 325 (558)
Q Consensus 247 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l 325 (558)
..|++++|..+++++.+..+.. ++. .+++++|+..|.++ +.++...++++++...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 3678889999999888765532 011 35555555555554 2344455555555555
Q ss_pred HHHHhhcCCC------ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHc
Q 048034 326 AHRVFTTDKY------RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMM 399 (558)
Q Consensus 326 ~~~~~~~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 399 (558)
+.+++...+. ...++..+|.+|...|++++|+.+|++++.+.+..... .....++..+|.+|..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---------DTAAMALDRAGKLMEP- 128 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHc-
Confidence 5555544332 14578899999999999999999999999986543211 0123578899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHH
Q 048034 400 HMPFYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHH 467 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~ 467 (558)
|++++|+.+|++++.+.|.. ..++.++|.+|.. +|++++|+.+|++++.+.|.+ ..++..+|.++.
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR--QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 99999999999999987653 5788999999999 999999999999999875433 347888999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q 048034 468 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEV 518 (558)
Q Consensus 468 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 518 (558)
.+|++++|+.+|++++ ..+.. ........+..++..+ ..|+.+.+..
T Consensus 207 ~~g~~~~A~~~~~~al-~~p~~--~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIPGF--SGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TSTTS--TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-CCCCC--CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999999999 53211 1122234455566655 5677665555
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.70 E-value=6.2e-17 Score=136.90 Aligned_cols=111 Identities=10% Similarity=0.068 Sum_probs=104.6
Q ss_pred HHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 048034 358 VYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 437 (558)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 437 (558)
..+++++.++|+ +..+++.+|.++...|++++|+.+|++++.++|+++.+|..+|.++.. .|+
T Consensus 23 ~~l~~al~l~p~---------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~--~g~ 85 (151)
T 3gyz_A 23 ATLKDINAIPDD---------------MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI--KEQ 85 (151)
T ss_dssp CCTGGGCCSCHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTC
T ss_pred CCHHHHhCCCHH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--Hcc
Confidence 456677788877 455799999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 438 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 438 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
+++|+.+|++++.++|+++.+++++|.+|..+|++++|+..|+++++.
T Consensus 86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999993
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=2e-16 Score=151.98 Aligned_cols=212 Identities=13% Similarity=0.055 Sum_probs=170.5
Q ss_pred HcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh-cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHH
Q 048034 281 SLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA-KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVY 359 (558)
Q Consensus 281 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 359 (558)
..|++++|.++++++.+..+... +. .++++.+...+.+ .|.+|...|++++|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~----------~~~~~~~~~A~~~~~~--------------a~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF----------MKWKPDYDSAASEYAK--------------AAVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS----------SSCSCCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc----------cCCCCCHHHHHHHHHH--------------HHHHHHHcCCHHHHHHH
Confidence 46889999999999988766421 11 4677777666555 58899999999999999
Q ss_pred HHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHH
Q 048034 360 FRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN--D----SRLWIAMAQCYETE 433 (558)
Q Consensus 360 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~ 433 (558)
|.+++.+.+...... ....++..+|.+|..+|++++|+.+|++++.+.+. + ..++.++|.+|.
T Consensus 59 ~~~al~~~~~~~~~~---------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-- 127 (307)
T 2ifu_A 59 YLQEAEAHANNRSLF---------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-- 127 (307)
T ss_dssp HHHHHHHHHHTTCHH---------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCHH---------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--
Confidence 999999876532211 12357889999999999999999999999987432 2 467889999985
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 434 QLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
.|++++|+.+|++++.+.+.. ..++.++|.++..+|++++|+.+|+++++..+.... .+....++..+|.++
T Consensus 128 -~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 128 -PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN-YPTCYKKCIAQVLVQ 205 (307)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHH
Confidence 399999999999999986543 468999999999999999999999999997654321 122345788899999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCc
Q 048034 508 RAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 508 ~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
...|++++|+.+|++++ ++|..
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHcCCHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999 88753
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.70 E-value=4.1e-16 Score=163.45 Aligned_cols=157 Identities=14% Similarity=0.065 Sum_probs=132.2
Q ss_pred cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 048034 350 KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQC 429 (558)
Q Consensus 350 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 429 (558)
.|++++|+..|+++++.+|++. .+|+.+|.++...|++++|+.+|+++++++|+++.++..+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF---------------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4789999999999999998854 4788999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 048034 430 YETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 509 (558)
Q Consensus 430 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 509 (558)
+.. .|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++ ..|.+..++..+|.++..
T Consensus 67 ~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 67 RWT--QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ-------LLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999 678889999999999999
Q ss_pred c---CCHHHHHHHHHHHhccCCCc
Q 048034 510 H---NRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 510 ~---g~~~~A~~~~~~al~~~~~~ 530 (558)
. |++++|...++++++.+|..
T Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 138 LCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred hhccccHHHHHHHHHHHHhcCCcc
Confidence 9 99999999999999998764
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=2.4e-16 Score=145.23 Aligned_cols=213 Identities=11% Similarity=-0.022 Sum_probs=173.4
Q ss_pred HcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHH-------HHHHhhcCCh
Q 048034 281 SLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCII-------GNYYSLKGQH 353 (558)
Q Consensus 281 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~l-------g~~~~~~~~~ 353 (558)
..+++..|...|.+++..+|.. +++|..+ +.++...+++
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~----------------------------------~Daw~g~~a~g~~~~~~L~~~~r~ 63 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESA----------------------------------CDAWIGRIRCGDTDRVTLFRAWYS 63 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC----------------------------------HHHHHHHHHTTCCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhChhh----------------------------------hHHHHhHHHccCCcHHHHHHHHHH
Confidence 3566666666666666666655 6677777 7888888888
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHhchhc--c----ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048034 354 EKSVVYFRRALKLNKNYLSAWTLMGHEY--K----SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMA 427 (558)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~~~~~~--~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 427 (558)
.+++..+++++.+.|....+++.+.-.| + ..-..++..++.++...|+|++|...|..++...|.+. ..+.+|
T Consensus 64 ~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a 142 (282)
T 4f3v_A 64 RRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKA 142 (282)
T ss_dssp GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHH
T ss_pred HHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHH
Confidence 9999999999999999887777622222 1 22345677789999999999999999999999999888 999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC-CC-hHHHHHHH
Q 048034 428 QCYETEQLHMLEEAIKCYRRAANCNDSE--AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG-PN-MVEALIFL 503 (558)
Q Consensus 428 ~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~-~~~~~~~l 503 (558)
.++.. .+++++|+..|+++....+.. ..+++.+|.++..+|++++|+.+|++++.. .. |. ...+++.+
T Consensus 143 ~l~~~--~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g------~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 143 VVYGA--AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS------PAGEACARAIAWYL 214 (282)
T ss_dssp HHHHH--TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------TTTTTTHHHHHHHH
T ss_pred HHHHH--cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC------CCCccccHHHHHHH
Confidence 99999 999999999999887754322 358999999999999999999999999851 22 54 77899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHH
Q 048034 504 ATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSML 538 (558)
Q Consensus 504 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll 538 (558)
|.++.++|+.++|...|++++..+|. ..+...|
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 99999999999999999999999976 4444443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.68 E-value=7.1e-16 Score=161.61 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=113.3
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCH
Q 048034 323 SYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402 (558)
Q Consensus 323 ~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 402 (558)
...+++++..+|.++.+++.+|.++...|++++|+.+|+++++++|++. .+++.+|.+|...|++
T Consensus 9 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 9 LLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---------------EAVARLGRVRWTQQRH 73 (568)
T ss_dssp ------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---------------HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCH
Confidence 3333333334444466777788888888888888888888888887744 4577778888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---CCHHHHHHHH
Q 048034 403 FYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL---GRDEEAAFYY 479 (558)
Q Consensus 403 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~ 479 (558)
++|+.+|+++++.+|+++.++..+|.++.. .|++++|+..|+++++.+|++..++..+|.++..+ |++++|+..|
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHALED--AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 888888888888888888888888888888 88888888888888888888888888888888888 8888888888
Q ss_pred HHHHHHHHhhhhcCCChHHHHHHHH
Q 048034 480 KKDLERMEAEEREGPNMVEALIFLA 504 (558)
Q Consensus 480 ~~al~~~~~~~~~~~~~~~~~~~la 504 (558)
+++++ ..|.....+..++
T Consensus 152 ~~al~-------~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 152 RAAVA-------QGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHH-------HTCCCSCHHHHTT
T ss_pred HHHHh-------cCCcccChHHHhC
Confidence 88877 3444444444444
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=1.8e-13 Score=143.48 Aligned_cols=336 Identities=11% Similarity=0.089 Sum_probs=237.9
Q ss_pred HHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcC------HHHhhcC------CC-
Q 048034 165 LSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTT------IDILNSI------NL- 231 (558)
Q Consensus 165 l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~------~~~~~~l------~~- 231 (558)
++..+..+|.|...|..+.......+.++.+..+|++++..+|.....|...+..-.. .+.+..+ ..
T Consensus 55 lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~ 134 (679)
T 4e6h_A 55 LNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL 134 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC
Confidence 4444555799999999999999999999999999999999999999999887665322 2222111 11
Q ss_pred --C--chHHHHHHHHHHHHHHhch--------HHHHHHHHHHHh---h-cCCChHHHHHHHHHHH---------HcccHH
Q 048034 232 --N--NHWMKDFFLASTYQELRMH--------NEALTKYEYLQG---T-FGFSNYLQAQIAKAQY---------SLREFE 286 (558)
Q Consensus 232 --~--~~~~~~~~~a~~~~~~~~~--------~~A~~~~~~~~~---~-~p~~~~~~~~~a~~~~---------~~~~~~ 286 (558)
+ +-|... .......++. +...+.|++++. . ++.+..+|........ ..++.+
T Consensus 135 ~~~sv~LW~~Y---l~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 135 GNNDLSLWLSY---ITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp CCCCHHHHHHH---HHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred CCCCHHHHHHH---HHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 2 223322 2222333332 334478888776 3 5667778877666543 345677
Q ss_pred HHHHHHHHHHHcCCCC-cch-HHHHHH-------------------------H---------------------------
Q 048034 287 QVEVVFEELLRNDPYR-VED-MDMYSN-------------------------V--------------------------- 312 (558)
Q Consensus 287 ~A~~~~~~~l~~~p~~-~~~-~~~~~~-------------------------~--------------------------- 312 (558)
.+..+|++++.. |.. .+. +..+.. .
T Consensus 212 ~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 212 YIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 888888888864 322 110 000000 0
Q ss_pred -------------------HHhcCC---------HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHH-HHHHHH
Q 048034 313 -------------------LYAKEC---------FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSV-VYFRRA 363 (558)
Q Consensus 313 -------------------l~~~~~---------~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~a 363 (558)
.+...+ ......++++++...|..+..|+..+......|+.++|+ ..|++|
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 000000 112345677788888888888888888888888888886 888888
Q ss_pred HccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc-----------CCC-----------CHH
Q 048034 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL-----------QPN-----------DSR 421 (558)
Q Consensus 364 l~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-----------~p~-----------~~~ 421 (558)
+...|... ..|...+......|+++.|...|++++.. .|. ...
T Consensus 371 i~~~P~s~---------------~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 371 QQCIPNSA---------------VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp HHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 88877744 46788888899999999999999999874 243 345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhhhcCCChHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANC-NDSEAIALNQLAKLHHALGR-DEEAAFYYKKDLERMEAEEREGPNMVEA 499 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~ 499 (558)
+|...+....+ .|..+.|...|.+|++. .+....++...|.+....++ .+.|..+|+++++.+ |.++..
T Consensus 436 vWi~y~~~erR--~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-------p~~~~~ 506 (679)
T 4e6h_A 436 VYCVYMNTMKR--IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-------ATDGEY 506 (679)
T ss_dssp HHHHHHHHHHH--HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TTCHHH
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-------CCchHH
Confidence 78888888888 88999999999999987 44456677777777776654 899999999999843 667778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 500 LIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 500 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
+...+......|+.+.|..+|++++...|
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 88888888889999999999999998765
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=5.9e-16 Score=142.63 Aligned_cols=207 Identities=7% Similarity=-0.092 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHH-------HHHHHHcccHHHHHHHHHHHHHcCCCCcchHHH---
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQI-------AKAQYSLREFEQVEVVFEELLRNDPYRVEDMDM--- 308 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~--- 308 (558)
|-.|.-+ ..++...|...|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|....+...
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3356655 58999999999999999999999999999 899999999999999999999988876544433
Q ss_pred ------------------HHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCC
Q 048034 309 ------------------YSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNY 370 (558)
Q Consensus 309 ------------------~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 370 (558)
++.++...|++++|..++..+....|.+. ..+.+|.++...+++++|+.+|+++....+..
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 77778888888888888888888888777 88888888888888888888888766543111
Q ss_pred HHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 371 LSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ--PN-DSRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--p~-~~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
. ...+++.+|.++..+|++++|+.+|++++... |. .+.+++.+|.++.. +|+.++|...|++
T Consensus 169 ~-------------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~--lGr~deA~~~l~~ 233 (282)
T 4f3v_A 169 L-------------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS--QGNESAAVALLEW 233 (282)
T ss_dssp H-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH--HTCHHHHHHHHHH
T ss_pred c-------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence 0 12367888888888888888888888887543 44 55678888888888 8888888888888
Q ss_pred HHhcCCCcHHHHHHHH
Q 048034 448 AANCNDSEAIALNQLA 463 (558)
Q Consensus 448 al~~~~~~~~~~~~la 463 (558)
++..+|+ ..+...|.
T Consensus 234 a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 234 LQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHSCC-HHHHHHHH
T ss_pred HHhcCCc-HHHHHHHh
Confidence 8888887 66655553
No 114
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.66 E-value=5.8e-15 Score=133.37 Aligned_cols=165 Identities=15% Similarity=0.000 Sum_probs=144.3
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcC----CHHHHHHHHH
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMH----MPFYALHYFR 410 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~----~~~~A~~~~~ 410 (558)
.++.+++.+|.+|...+++++|+.+|+++.+.. ++.+++.+|.+|.. + ++++|+.+|+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----------------DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 568899999999999999999999999998753 34578899999988 7 8999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 048034 411 KSVFLQPNDSRLWIAMAQCYETE--QLHMLEEAIKCYRRAANCND--SEAIALNQLAKLHHA----LGRDEEAAFYYKKD 482 (558)
Q Consensus 411 ~a~~~~p~~~~~~~~la~~~~~~--~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 482 (558)
++.+ +.++.+++.+|.+|..- ..+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9965 57899999999999630 04689999999999999988 458999999999999 89999999999999
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccC
Q 048034 483 LERMEAEEREGPNMVEALIFLATHCRAH-N-----RFEDAEVYCTRLLDYT 527 (558)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 527 (558)
++ . +.++.+++.||.+|... | ++++|+.+|+++.+..
T Consensus 156 ~~-------~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SS-------L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HH-------T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HH-------c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98 3 45677999999999864 3 8999999999999874
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.66 E-value=1.9e-14 Score=137.20 Aligned_cols=179 Identities=12% Similarity=-0.060 Sum_probs=149.8
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
....+...+..+...|++++|+..++++++..+....... ....++.+|.++...|++++|+.+|++++..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 144 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ---------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH---------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH---------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999998877554321 2235677999999999999999999999987
Q ss_pred CCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 416 QPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAA---NCNDSEA----IALNQLAKLHHALGRDEEAAFYYKKD 482 (558)
Q Consensus 416 ~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 482 (558)
.+.. ..++..+|.+|.. .|++++|+.+|++++ +..|++. .+++++|.+|..+|++++|+.+++++
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~y~~--~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 145 QLTGIDVYQNLYIENAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 5543 5689999999999 999999999999999 4455532 58999999999999999999999999
Q ss_pred HHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 048034 483 LERMEAEEREGPNMVEALIFLATHCRAHNRFEDA-EVYCTRLLDY 526 (558)
Q Consensus 483 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 526 (558)
++.... .........+++.+|.++...|++++| ..+|++++.+
T Consensus 223 l~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 223 IEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 997643 223445688999999999999999999 8889999864
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.65 E-value=5.3e-15 Score=122.44 Aligned_cols=134 Identities=28% Similarity=0.424 Sum_probs=127.5
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
.+|+.+|.++...|++++|+.+|++++...|.++..+..+|.++.. .|++++|+..+++++...|.++.++..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH--hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 048034 467 HALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 467 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 529 (558)
...|++++|+..++++++ ..|....++..+|.++...|++++|..++++++..+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALE-------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999998 56777899999999999999999999999999998764
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.65 E-value=3.3e-17 Score=159.31 Aligned_cols=161 Identities=12% Similarity=0.059 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHH----HHHHhchhccccchHHHHHhHHHH
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS----AWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
++...+..++..+|..+.++..+|.++...|++++|+.+|++++.++|++.. ....+. +....+|+++|.+|
T Consensus 131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~----~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQ----ALRLASHLNLAMCH 206 (336)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHH----HHHHHHHHHHHHHH
Confidence 3333334444455666889999999999999999999999999999998620 000000 11246899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEA- 475 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A- 475 (558)
..+|++++|+.+|+++++++|+++.+++.+|.+|.. +|++++|+.+|+++++++|++..++..++.++..+|++++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA--VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 048034 476 AFYYKKDLERME 487 (558)
Q Consensus 476 ~~~~~~al~~~~ 487 (558)
...|++++..+.
T Consensus 285 ~~~~~~~~~~~~ 296 (336)
T 1p5q_A 285 KKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 567888877543
No 118
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=4.5e-16 Score=151.25 Aligned_cols=134 Identities=19% Similarity=0.114 Sum_probs=126.0
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND---------------SRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
|....+++.+|.++...|++++|+.+|++++.+.|.+ ..+|.++|.++.. +|++++|+.+|++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK--LQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHH
Confidence 4466789999999999999999999999999999998 6999999999999 9999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHhc
Q 048034 448 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDA-EVYCTRLLD 525 (558)
Q Consensus 448 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~ 525 (558)
++.++|+++.+++.+|.++..+|++++|+..|+++++ ..|.+..++..++.++...|++++| ...|++++.
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ-------LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 6799999999999999999999999 557777764
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.64 E-value=3.7e-14 Score=128.02 Aligned_cols=178 Identities=11% Similarity=0.004 Sum_probs=127.4
Q ss_pred HHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHH
Q 048034 194 LARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQA 273 (558)
Q Consensus 194 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 273 (558)
+|+.+|+++.+. .++.++..| |.++...+++++|+..|+++.+. .++.+++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~l-------------------------g~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~ 54 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYL-------------------------ADTWVSSGDYQKAEYWAQKAAAQ--GDGDALA 54 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHH-------------------------HHHHHHHTCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHH-------------------------HHHHhcCCCHHHHHHHHHHHHHc--CCHHHHH
Confidence 466666666653 455666555 66677777777777777777653 4566777
Q ss_pred HHHHHHHHcc----cHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 048034 274 QIAKAQYSLR----EFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL 349 (558)
Q Consensus 274 ~~a~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~ 349 (558)
.+|.+|.. + ++++|+.+|+++.+. .++.+++.+|.+|..
T Consensus 55 ~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------------------------------------g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 55 LLAQLKIR-NPQQADYPQARQLAEKAVEA------------------------------------GSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHTTS-STTSCCHHHHHHHHHHHHHT------------------------------------TCHHHHHHHHHHHTC
T ss_pred HHHHHHHc-CCCCCCHHHHHHHHHHHHHC------------------------------------CCHHHHHHHHHHHHc
Confidence 77777666 5 677777777776442 236677888888877
Q ss_pred ----cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH----cCCHHHHHHHHHHHHhcCCCCHH
Q 048034 350 ----KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM----MHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 350 ----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
.+++++|+.+|+++.+..+.. ..+.+++.||.+|.. .+++++|+.+|+++++. |.++.
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~-------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~ 163 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESD-------------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY 163 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSH-------------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCc-------------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH
Confidence 788888888888888877631 023567888888888 77888888888888887 66677
Q ss_pred HHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 048034 422 LWIAMAQCYETEQL-H-----MLEEAIKCYRRAANCND 453 (558)
Q Consensus 422 ~~~~la~~~~~~~~-~-----~~~~A~~~~~~al~~~~ 453 (558)
+++.+|.+|.. . | ++++|+.+|+++.+...
T Consensus 164 a~~~Lg~~y~~--g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 164 AEYWAGMMFQQ--GEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHH--CBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc--CCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888888875 3 3 78888888888887754
No 120
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=1e-12 Score=137.83 Aligned_cols=412 Identities=9% Similarity=0.019 Sum_probs=281.2
Q ss_pred HHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCC
Q 048034 93 FYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNG 172 (558)
Q Consensus 93 ~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 172 (558)
...+++..-..+.++++..+++.+...-+..-.++..|+..+.+... . .....+..-++..+...
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~-----------~----~~~~~v~~lfeRal~~~ 133 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKME-----------E----LDAAVIEPVLARCLSKE 133 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC-------------C----CCHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCC-----------c----chHHHHHHHHHHHHHhc
Confidence 33567777777888888888887633111111223344433222100 0 12455566677777766
Q ss_pred C--CchHHHHHHHHHHHhcCCh----HH----HHHHHHHHhhh----CCCCHHHHHHHHhhhcC---------HHHh---
Q 048034 173 T--MDPFILYLYGLVLKDKGSE----NL----ARTVLVESVNS----YPWNWNSWLELQSLCTT---------IDIL--- 226 (558)
Q Consensus 173 ~--~~~~~~~~~g~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~l~~~~~~---------~~~~--- 226 (558)
+ .++.+|..+.......++. ++ ....|++++.. +|.+...|......... ...+
T Consensus 134 ~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 134 LGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp SCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 3 6777888887776666654 33 44788888863 67777788777654321 1111
Q ss_pred -----hcCCCCchHHHHHHHHHHHHH---------------HhchHHHHHHHHHHHhh-------cCCC-----------
Q 048034 227 -----NSINLNNHWMKDFFLASTYQE---------------LRMHNEALTKYEYLQGT-------FGFS----------- 268 (558)
Q Consensus 227 -----~~l~~~~~~~~~~~~a~~~~~---------------~~~~~~A~~~~~~~~~~-------~p~~----------- 268 (558)
..+..|.+-+..++....-+. ..+|..|...+...... .|..
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~ 293 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPK 293 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCC
Confidence 112344322222221111111 12233344444332110 1211
Q ss_pred ------hHHHHHHHHHHHHccc---------HHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH-HHHHHHhhc
Q 048034 269 ------NYLQAQIAKAQYSLRE---------FEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS-YLAHRVFTT 332 (558)
Q Consensus 269 ------~~~~~~~a~~~~~~~~---------~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~-~l~~~~~~~ 332 (558)
..+......+-+...+ .......|++++...|...+.+..++..+...++.+++. .++.+++..
T Consensus 294 ~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 294 PNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373 (679)
T ss_dssp TTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1112222222233222 345678899999999999999999999999999998996 999999999
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC-----------cCCHHHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN-----------KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
.|.+...|+..+.+....|++++|...|++++... |.+......+. .....+|...+....+.|.
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~----~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK----SKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc----cchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999753 32110000000 0123478888888889999
Q ss_pred HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 048034 402 PFYALHYFRKSVFL-QPNDSRLWIAMAQCYETEQLHM-LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYY 479 (558)
Q Consensus 402 ~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 479 (558)
.+.|...|.+|++. .+....+|...|.+... .++ ++.|.+.|+++++..|+++..|...+......|+.+.|..+|
T Consensus 450 l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~--~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 450 LAASRKIFGKCRRLKKLVTPDIYLENAYIEYH--ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT--TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987 55567788877877766 655 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHH
Q 048034 480 KKDLERMEAEEREGP---NMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKE 532 (558)
Q Consensus 480 ~~al~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 532 (558)
++++.. .+ ....+|..........|+.+.+...++++.+..|++..
T Consensus 528 eral~~-------~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 528 ESSIDK-------ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHTTT-------SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHh-------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 999983 34 46678888899999999999999999999999887653
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.64 E-value=1.9e-15 Score=142.99 Aligned_cols=106 Identities=11% Similarity=0.007 Sum_probs=100.6
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchH
Q 048034 173 TMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHN 252 (558)
Q Consensus 173 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 252 (558)
|.++..++.+|..+...|++++|+..|.+++..+|.+..+|..+ |.++...|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------a~~~~~~~~~~ 55 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR-------------------------ALCYLKMQQPE 55 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-------------------------HHHHHHTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH-------------------------HHHHHHhcCHH
Confidence 45678899999999999999999999999999999999999887 99999999999
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc
Q 048034 253 EALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV 303 (558)
Q Consensus 253 ~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 303 (558)
+|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++.
T Consensus 56 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 56 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 999999999999999999999999999999999999999999999988764
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.64 E-value=6.2e-16 Score=130.92 Aligned_cols=113 Identities=17% Similarity=0.082 Sum_probs=106.1
Q ss_pred HHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 048034 357 VVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH 436 (558)
Q Consensus 357 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 436 (558)
-..|++++.++|+ +..+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++.. .|
T Consensus 7 ~~~~~~al~~~p~---------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g 69 (148)
T 2vgx_A 7 GGTIAMLNEISSD---------------TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA--MG 69 (148)
T ss_dssp CCSHHHHTTCCHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TT
T ss_pred hhhHHHHHcCCHh---------------hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH--Hh
Confidence 3467888888887 445789999999999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 437 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 437 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
++++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++..
T Consensus 70 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999953
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.62 E-value=1.4e-15 Score=128.78 Aligned_cols=117 Identities=9% Similarity=-0.052 Sum_probs=111.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 406 LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 406 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
-..|++++.++|++...++.+|.++.. .|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++.
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~- 83 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQ--SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV- 83 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 456889999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 486 MEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 486 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
..|+++.+++.+|.++...|++++|+.+|+++++++|.++
T Consensus 84 ------l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 84 ------MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp ------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred ------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 6789999999999999999999999999999999887654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=2.8e-14 Score=135.97 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh
Q 048034 270 YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL 349 (558)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~ 349 (558)
..+...+..+...|++++|+..+.++++..+........ ...++.+|.++..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~ 127 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF----------------------------LQWQYYVAAYVLK 127 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHH----------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHH----------------------------HHHHHHHHHHHhc
Confidence 344567788899999999999999999987764322111 2445678999999
Q ss_pred cCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH---hcCCCCH----HH
Q 048034 350 KGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV---FLQPNDS----RL 422 (558)
Q Consensus 350 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~---~~~p~~~----~~ 422 (558)
.|++++|+.+|++++...+.....+ ....+++.+|.+|...|++++|+.+|++++ ...|++. .+
T Consensus 128 ~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~ 198 (293)
T 2qfc_A 128 KVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp SSCHHHHHHHHHHHHTTCCCSSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHH
Confidence 9999999999999998765432211 123578999999999999999999999999 4456643 68
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANCNDS------EAIALNQLAKLHHALGRDEEA-AFYYKKDLERME 487 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 487 (558)
++++|.+|.. +|++++|+.++++++.+.+. ...+++++|.+|..+|++++| ..+|++++...+
T Consensus 199 ~~nlg~~y~~--~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 199 RYNHAKALYL--DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHH--HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 8999999999 99999999999999987532 267999999999999999999 888999998654
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-14 Score=118.63 Aligned_cols=123 Identities=15% Similarity=0.031 Sum_probs=111.7
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
.....|+.+|..+...|++++|+.+|++++.++|+++.+|..+|.++.. .|++++|+..|++++.++|+++.+++.+|
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK--LMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 509 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 509 (558)
.++..+|++++|+..|+++++..+... ..|.+..++..++.+..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVN-NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccC-CchhHHHHHHHHHHHHHh
Confidence 999999999999999999999543222 338888888888887654
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.61 E-value=3.9e-15 Score=140.79 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=112.6
Q ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 048034 266 GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGN 345 (558)
Q Consensus 266 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~ 345 (558)
|.+...+..+|..++..|++++|+..|+++++.+|.+ +.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------------~~~~~~la~ 46 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----------------------------------AVYYTNRAL 46 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------------------------------HHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----------------------------------HHHHHHHHH
Confidence 3455666666777777777777777777776666554 455566666
Q ss_pred HHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 048034 346 YYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIA 425 (558)
Q Consensus 346 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 425 (558)
+|...|++++|+..|+++++++|++. .+++.+|.+|..+|++++|+.+|++++.++|+++..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 111 (281)
T 2c2l_A 47 CYLKMQQPEQALADCRRALELDGQSV---------------KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH
Confidence 66666666666666666666666633 346666666666666666666666666666554221111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHH
Q 048034 426 MAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLAT 505 (558)
Q Consensus 426 la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 505 (558)
....... ..++...........+.++.+...++.++ .|++++|+..++++++ ..|.+......++.
T Consensus 112 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~ 177 (281)
T 2c2l_A 112 DIPSALR-----IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHE-------GHEDDGHIRAQQAC 177 (281)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGT-------TTSCHHHHTHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhc-------cccchhhhhhHHHH
Confidence 1111111 11112222222334455555555555543 4666666666666665 55666666666665
Q ss_pred HHHHc-CCHHHHHHHHHHHhc
Q 048034 506 HCRAH-NRFEDAEVYCTRLLD 525 (558)
Q Consensus 506 ~~~~~-g~~~~A~~~~~~al~ 525 (558)
++... +.+++|.+.|.++.+
T Consensus 178 ~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 178 IEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 55554 556667777766654
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=2.5e-14 Score=118.33 Aligned_cols=130 Identities=30% Similarity=0.504 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
.+++.+|.++...|++++|+..|+++++.+|.+. .+++.+|.++...|++++|+.+|++++...|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch---------------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 4688899999999999999999999999988744 4688899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.++..+..+|.++.. .|++++|+..+++++...|.++.++..+|.++...|++++|...++++++
T Consensus 67 ~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 999999999999999 99999999999999999999999999999999999999999999999988
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=2.1e-15 Score=126.80 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=73.0
Q ss_pred HHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHH
Q 048034 326 AHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYA 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 405 (558)
+++++..+|.++..++.+|..+...|++++|+..|++++..+|++. .+|+.+|.++...|++++|
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A 71 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---------------RYFLGLGACRQSLGLYEQA 71 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHHhhHHHH
Confidence 3444555555566666666666666666666666666666666633 3456666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 048034 406 LHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 458 (558)
Q Consensus 406 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 458 (558)
+.+|++++.++|+++.+++.+|.++.. .|++++|+.+|++++.++|+++..
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQ--LGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCcch
Confidence 666666666666666666666666666 666666666666666666655443
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.5e-14 Score=118.68 Aligned_cols=118 Identities=16% Similarity=0.105 Sum_probs=109.5
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
..+..+..+|..+...|++++|+.+|++++.++|++. .+|+.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999854 4789999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHc
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN------DSEAIALNQLAKLHHAL 469 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~ 469 (558)
++|+++.+|..+|.++.. .|++++|+..|++++.++ |.+..++..++.+..++
T Consensus 67 ~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 67 KDPNFVRAYIRKATAQIA--VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred hCCCcHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999 999999999999999999 99999998888877653
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=3.3e-15 Score=125.58 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=102.2
Q ss_pred HHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 048034 358 VYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHM 437 (558)
Q Consensus 358 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 437 (558)
..|++++.++|+ +...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++.. .|+
T Consensus 5 ~~l~~al~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~ 67 (142)
T 2xcb_A 5 GTLAMLRGLSED---------------TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS--LGL 67 (142)
T ss_dssp ----CCTTCCHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTC
T ss_pred hhHHHHHcCCHH---------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--Hhh
Confidence 456777777776 455788999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 438 LEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 438 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
+++|+.+|++++.++|+++.+++.+|.++..+|++++|+..|+++++..
T Consensus 68 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 68 YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999954
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.60 E-value=8e-14 Score=132.82 Aligned_cols=175 Identities=11% Similarity=-0.058 Sum_probs=143.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 048034 340 CCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND 419 (558)
Q Consensus 340 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~ 419 (558)
+...+..+...|++++|+..+++++...+..+..... ...+..+|.++...+++++|+.+|++++.+.+..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF---------LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH---------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH---------HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc
Confidence 3345778889999999999999999988776553110 1244569999999999999999999999864432
Q ss_pred ------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 420 ------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 420 ------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
..++..+|.+|.. .|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.+++++++..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3478999999999 99999999999999952 22234589999999999999999999999999976
Q ss_pred HhhhhcCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHhcc
Q 048034 487 EAEEREGPNMVEALIFLATHCRAHNR-FEDAEVYCTRLLDY 526 (558)
Q Consensus 487 ~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 526 (558)
+... .......+++.+|.++..+|+ +++|+.+|++++.+
T Consensus 227 ~~~~-~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 227 CRIN-SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTT-BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcC-cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 5433 345568899999999999995 79999999999874
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.60 E-value=2.5e-14 Score=129.28 Aligned_cols=127 Identities=14% Similarity=0.040 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
..++.+|..+...|++++|+..|++++ +| ++.+++.+|.+|...|++++|+.+|++++..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP----------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 345667777777777777777777774 22 123577777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA----------------IALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
+++.++..+|.++.. .|++++|+..|++++...|.+. .+++.+|.++...|++++|+..|++
T Consensus 69 ~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQ--TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH--cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 777777777777777 7777777777777777666544 6666677777777777777777766
Q ss_pred HHH
Q 048034 482 DLE 484 (558)
Q Consensus 482 al~ 484 (558)
+++
T Consensus 147 al~ 149 (213)
T 1hh8_A 147 ATS 149 (213)
T ss_dssp HHT
T ss_pred HHH
Confidence 666
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.59 E-value=7.3e-14 Score=126.11 Aligned_cols=141 Identities=18% Similarity=0.116 Sum_probs=124.4
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
...++.+|.++...|++++|+..|++++ .| ++.++..+|.++.. .|++++|+..|++++..+|.++.+++.+|.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTI--LKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3467899999999999999999999996 33 78999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhh---------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEE---------REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
+...|++++|+..|+++++..+... ...|....+++.+|.++...|++++|+.+|+++++++|...
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999998432110 01234559999999999999999999999999999987654
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=6.3e-14 Score=120.86 Aligned_cols=135 Identities=15% Similarity=0.077 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
+..++.+|..+...|++++|+.+|++++..+|.+. .+++.+|.++...|++++|+.+|++++..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 77 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDATRAIELD 77 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999999998854 578899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHh
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL--AKLHHALGRDEEAAFYYKKDLERMEA 488 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~ 488 (558)
|.++.++..+|.++.. .|++++|+.+|++++..+|.+..++..+ +..+...|++++|+..+.+....+..
T Consensus 78 ~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 78 KKYIKGYYRRAASNMA--LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 9999999999999999 9999999999999999999999888554 45588899999999999998876543
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=4.9e-14 Score=134.31 Aligned_cols=176 Identities=11% Similarity=0.053 Sum_probs=139.6
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCCh
Q 048034 274 QIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQH 353 (558)
Q Consensus 274 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 353 (558)
..+..+...|++++|+..++++++..+........ ...+..+|.++...|++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~~~~~ 131 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF----------------------------LQWQYYVAAYVLKKVDY 131 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH----------------------------HHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH----------------------------HHHHHHHHHHHHcccCH
Confidence 34667788899999999999998876654332111 12445689999999999
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHHHHH
Q 048034 354 EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL-------QPNDSRLWIAM 426 (558)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~~l 426 (558)
++|+.+|++++.+.+.....+ ....++..+|.+|...|++++|+.+|++++.. .+....++.++
T Consensus 132 ~~Ai~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl 202 (293)
T 3u3w_A 132 EYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHHHHHHHHHTCCCCSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccHH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 999999999998755432210 01347899999999999999999999999952 22235688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q 048034 427 AQCYETEQLHMLEEAIKCYRRAANCNDSE------AIALNQLAKLHHALGR-DEEAAFYYKKDLERMEA 488 (558)
Q Consensus 427 a~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 488 (558)
|.+|.. +|++++|+.++++++.+.+.. +.+++.+|.++..+|+ +++|+.+|++++...+.
T Consensus 203 g~~y~~--~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 203 AKALYL--DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999875332 7799999999999995 69999999999997654
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=5.4e-14 Score=121.29 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=121.7
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
....++.+|.++...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+.++++++..+|.++.+++.+|.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIF--LATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
++...|++++|+.+|+++++ ..|.+..++.. ++..+...|++++|+..+.++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~-------~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999998 56777777754 455588899999999999887643
No 137
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.58 E-value=1e-13 Score=129.33 Aligned_cols=256 Identities=12% Similarity=-0.005 Sum_probs=190.7
Q ss_pred HHHHHHHhchHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHh
Q 048034 242 ASTYQELRMHNEALTKYEYLQGTFGFS-NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFS 320 (558)
Q Consensus 242 a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 320 (558)
.+-.+-.|+|..++....+ ..|.+ ......+.+++..+|++.... ..+....++..++..+. ++
T Consensus 20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT--
T ss_pred HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc--
Confidence 5667788999999985443 33333 345666788899999877421 11112224444444432 22
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcC
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMH 400 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 400 (558)
+...+++.+...+....++..+|.++...|++++|+.++.+.+..+|. +.+..++..+++++..+|
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-------------~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-------------EGTTELLLLAIEVALLNN 150 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-------------TTHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-------------cCcHHHHHHHHHHHHHCC
Confidence 667777777776667778889999999999999999999999998873 124467888999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcC
Q 048034 401 MPFYALHYFRKSVFLQPN------DSRLWIAMAQCYETEQLH--MLEEAIKCYRRAANCNDS--EAIALNQLAKLHHALG 470 (558)
Q Consensus 401 ~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g 470 (558)
+.+.|.+.++++.+.+|+ .......-|++... .| ++.+|...|+++....|+ .+..+++ ++..+|
T Consensus 151 r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~--~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g 225 (310)
T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFA--TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQR 225 (310)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHT
T ss_pred CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcC
Confidence 999999999999999883 23333333555666 56 999999999999988887 3344444 899999
Q ss_pred CHHHHHHHHHHHHHHHHhhhh---cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHH
Q 048034 471 RDEEAAFYYKKDLERMEAEER---EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 471 ~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 533 (558)
++++|...++.+++..+.... .+|+++.++.+++.+....|+ +|.+++.++.+.+|.++-.
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 999999999977764322111 148899999999999999998 8999999999999877643
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.58 E-value=1.4e-14 Score=126.76 Aligned_cols=127 Identities=17% Similarity=0.277 Sum_probs=116.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHcCCH--
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL-HHALGRD-- 472 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~-- 472 (558)
+...|++++|+..|++++..+|+++.+|..+|.++.. .|++++|+.+|++++..+|.++.++..+|.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW--QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567899999999999999999999999999999999 9999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcH
Q 048034 473 EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEK 531 (558)
Q Consensus 473 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 531 (558)
++|+..|+++++ ..|.+..+++.+|.++...|++++|+.+|+++++.+|.+.
T Consensus 98 ~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 98 AQTRAMIDKALA-------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999 6788899999999999999999999999999999988764
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=8e-15 Score=151.74 Aligned_cols=185 Identities=10% Similarity=-0.008 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHhhcCC----------hHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHH
Q 048034 321 ALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQ----------HEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWY 390 (558)
Q Consensus 321 ~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 390 (558)
+|.....+++..+|.+..+|+..+.++...|+ +++++.++.++++.+|++ +.+|+
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---------------y~aW~ 111 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWH 111 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHH
Confidence 34444445555555557788888888888887 999999999999999995 45788
Q ss_pred HhHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 391 GLGQAYEMMH--MPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH-MLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 391 ~lg~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
..+.++...+ ++++++.++.++++.+|.+..+|...+.+... .| .++++++++.++++.+|.+..+|+.++.++.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~--l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ--AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH--cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 8889999999 67999999999999999999999999999999 99 9999999999999999999999999999998
Q ss_pred Hc--------------CCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHH------------HHHHHH
Q 048034 468 AL--------------GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFED------------AEVYCT 521 (558)
Q Consensus 468 ~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~------------A~~~~~ 521 (558)
.+ +.+++|++++.+++. .+|++..+|++++.++.+.+++++ |+.+|.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~-------~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~ 262 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFF-------TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFS 262 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH-------HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEE
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHh-------hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEec
Confidence 85 557999999999998 689999999999999999988766 566677
Q ss_pred HHhccCCC
Q 048034 522 RLLDYTGP 529 (558)
Q Consensus 522 ~al~~~~~ 529 (558)
+++.++|.
T Consensus 263 ~~i~~~~~ 270 (567)
T 1dce_A 263 RPLTVGSR 270 (567)
T ss_dssp EEECTTBT
T ss_pred cceecccc
Confidence 77777654
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=5.4e-14 Score=116.22 Aligned_cols=121 Identities=17% Similarity=0.078 Sum_probs=114.8
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 462 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 462 (558)
|.+..+|+.+|.++...|++++|+.+|++++...|.+..++..+|.++.. .|++++|+.++++++..+|.++.+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK--LLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT--TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 44677899999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCC
Q 048034 463 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNR 512 (558)
Q Consensus 463 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 512 (558)
|.++...|++++|+.+|+++++ ..|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD-------LDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-------HCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHH-------hCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999998 568888999999999988774
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.56 E-value=4.8e-15 Score=132.43 Aligned_cols=161 Identities=11% Similarity=0.015 Sum_probs=109.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 048034 341 CIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS 420 (558)
Q Consensus 341 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~ 420 (558)
...+......|++++|.+.+.......+. ....+..+|..+...|++++|+.+|++++.+.|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQ---------------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp --------------CCCSGGGCCHHHHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 34455555566666666555433322222 345677888888888888888888888888887776
Q ss_pred ----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 421 ----------------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 421 ----------------~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.++.++|.++.. .|++++|+.++++++.++|.++.+++.+|.++..+|++++|+..|+++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 73 EWDDQILLDKKKNIEISCNLNLATCYNK--NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 788888888888 88888888888888888888888888888888888888888888888888
Q ss_pred HHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHhc
Q 048034 485 RMEAEEREGPNMVEALIFLATHCRAHNRFEDAE-VYCTRLLD 525 (558)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~ 525 (558)
..|.+..++..++.++...|+..++. ..|.+.+.
T Consensus 151 -------~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 151 -------LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -------HSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -------HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888888888888888877776 44555544
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.56 E-value=5.7e-14 Score=116.10 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=115.1
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
..|..+..++.+|.++...|++++|+.+|++++..+|.+. .+++.+|.++...|++++|+.+|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------------KLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3456788999999999999999999999999999998854 5788999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 471 (558)
++...|.++.++..+|.++.. .|++++|+.+|++++..+|.+..++..++.++..+|+
T Consensus 76 a~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 76 CIQLEPTFIKGYTRKAAALEA--MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhCCCchHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999 9999999999999999999999999999999988774
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.55 E-value=9e-14 Score=114.33 Aligned_cols=121 Identities=20% Similarity=0.186 Sum_probs=115.3
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
.+...++.+|..+...|++++|+.+|++++...|+++.++..+|.++.. .|++++|+.++++++...|.++.+++.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK--LGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCH
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRF 513 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 513 (558)
.++...|++++|+.+|+++++ ..|.+..++..+|.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE-------LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHh-------cCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998 5788899999999999999875
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.55 E-value=5.4e-14 Score=115.68 Aligned_cols=123 Identities=18% Similarity=0.197 Sum_probs=115.3
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
+|..+..++.+|..+...|++++|+.+|++++..+|++. .+++.+|.++...|++++|+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---------------VYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 445678899999999999999999999999999998854 47889999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 048034 413 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRD 472 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 472 (558)
+...|+++.++..+|.++.. .|++++|+.+|++++...|.++.++..++.++...|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 73 ICIDPAYSKAYGRMGLALSS--LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhcCccCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999999999998875
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.55 E-value=1.1e-13 Score=113.71 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHH
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 499 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 499 (558)
+.++.++|.+++. .|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++..+......+....+
T Consensus 8 A~a~~~lG~~~~~--~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYK--QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4566778888888 88888888888888888888888888888888888888888888888887554332222334568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 500 LIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 500 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
+..+|.++...|++++|+++|++++..+| +++..
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~ 119 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELV 119 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHH
Confidence 88999999999999999999999999864 55543
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=5.6e-14 Score=121.25 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=96.3
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
++.++..++.+|.++...|++++|+.+|+++++++|++. .+|+.+|.+|...|++++|+.+|+++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------------IYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344567888888888888888888888888888888744 46788888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 413 VFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
+.++|+++.+|+.+|.++.. +|++++|+.+|++++.++|++..+++..+..
T Consensus 72 l~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 72 TVVDPKYSKAWSRLGLARFD--MADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 88888888888888888888 8888888888888888888887766655544
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=1.2e-13 Score=142.96 Aligned_cols=178 Identities=11% Similarity=0.003 Sum_probs=159.5
Q ss_pred HHHhc-hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHccc----------HHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Q 048034 246 QELRM-HNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLRE----------FEQVEVVFEELLRNDPYRVEDMDMYSNVLY 314 (558)
Q Consensus 246 ~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~ 314 (558)
...|. .++|+..+++++..+|++..+|...+.++...|+ +++++..++++++.+|.+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~------------ 106 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS------------ 106 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC------------
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC------------
Confidence 34444 4688999999999999999999999999999988 888888888888877776
Q ss_pred hcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcC--ChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHh
Q 048034 315 AKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKG--QHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392 (558)
Q Consensus 315 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l 392 (558)
..+|+..+.++...+ ++++++.++.++++++|.+. .+|...
T Consensus 107 ----------------------y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~---------------~aW~~R 149 (567)
T 1dce_A 107 ----------------------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF---------------HCWDYR 149 (567)
T ss_dssp ----------------------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH---------------HHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc---------------cHHHHH
Confidence 678888999999999 66999999999999999855 467888
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCcHH
Q 048034 393 GQAYEMMH-MPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQL--------------HMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 393 g~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~--------------~~~~~A~~~~~~al~~~~~~~~ 457 (558)
+.+....| .+++++.++.++++.+|.+..+|..++.++.. + +.+++|++++.+|+.++|++..
T Consensus 150 ~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~--l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ--LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH--HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh--hcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 88888999 89999999999999999999999999999987 6 6689999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHH
Q 048034 458 ALNQLAKLHHALGRDEE 474 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~ 474 (558)
+|+.++.++...+++++
T Consensus 228 aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 228 AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhcCCCccc
Confidence 99999999999888665
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.54 E-value=3.2e-14 Score=124.51 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=110.7
Q ss_pred HhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 048034 347 YSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAM 426 (558)
Q Consensus 347 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 426 (558)
+...|++++|+..|++++..+|++. .+|+.+|.+|...|++++|+.+|++++.++|+++.++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4567899999999999999999854 4788999999999999999999999999999999999999
Q ss_pred HHH-HHHHhcCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 427 AQC-YETEQLHML--EEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 427 a~~-~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
|.+ +.. .|++ ++|+.+|++++..+|.++.+++.+|.++...|++++|+..|+++++
T Consensus 85 a~~l~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 85 ATVLYYQ--ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHH--TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999 888 9999 9999999999999999999999999999999999999999999998
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.53 E-value=3.2e-14 Score=118.55 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc-
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL- 415 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~- 415 (558)
...+..+|+.+...|+|++|+..|+++++++|+++.+- .....|.+..+|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999999942210 00000234457888888888888888888888888888
Q ss_pred ------CCCCHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 048034 416 ------QPNDSRLW----IAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 458 (558)
Q Consensus 416 ------~p~~~~~~----~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 458 (558)
+|+++.+| +++|.++.. +|++++|+.+|+++++++|.+..+
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~--lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDG--LGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHH--CCCHHHHHHHHHHHHhcCCCcHHH
Confidence 88888888 888888888 888888888888888887766543
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.53 E-value=1.2e-14 Score=129.81 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=116.5
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHH-hchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTL-MGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.+..+..+|..+...|++++|+.+|++++.+.|.+...... ...........+++.+|.+|...|++++|+.+|++++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 36778899999999999999999999999998875410000 00000000125789999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAA-FYYKKDL 483 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 483 (558)
++|+++.+++.+|.++.. +|++++|+.+|++++.++|.+..++..++.++...++..++. ..|.+..
T Consensus 117 ~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMY--FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HSTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred hCcccHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999999999999999999999998887776 3444433
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.53 E-value=9.3e-14 Score=119.84 Aligned_cols=113 Identities=14% Similarity=0.062 Sum_probs=103.8
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
+...++.+|.++...|++++|+.+|++++.++|+++.+|..+|.+|.. .|++++|+.+|++++.++|+++.+++.+|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA--SGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
++..+|++++|+.+|+++++. .|++..+++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA-------EGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------HSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh-------CCCchHHHHHHHHH
Confidence 999999999999999999994 46666655554433
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.52 E-value=1.5e-13 Score=112.86 Aligned_cols=98 Identities=16% Similarity=0.139 Sum_probs=92.1
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-------AI 457 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~ 457 (558)
...++..+|..++..|+|++|+.+|+++++++|+++.+|.++|.+|.. +|++++|+..|+++++++|++ ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE--EKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH--hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 346788999999999999999999999999999999999999999999 999999999999999987754 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
++.++|.++..+|++++|+.+|++++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999999999998
No 153
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.52 E-value=5.8e-13 Score=124.32 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=148.6
Q ss_pred HHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCC--CCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHH
Q 048034 163 RELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYP--WNWNSWLELQSLCTTIDILNSINLNNHWMKDFF 240 (558)
Q Consensus 163 ~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 240 (558)
..++++...++.++..++++|.++...|++++|+.++.+.+..+| .+.+++..+
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~------------------------ 142 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLA------------------------ 142 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHH------------------------
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHH------------------------
Confidence 345555555566778889999999999999999999999999887 666776665
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGF------SNYLQAQIAKAQYSLR--EFEQVEVVFEELLRNDPYRVEDMDMYSNV 312 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~~a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (558)
+.+++..|+.+.|.+.++++.+.+|+ ...+...-|++....| ++.+|..+|+++.+..|........+. +
T Consensus 143 -vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~ 220 (310)
T 3mv2_B 143 -IEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-L 220 (310)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-H
T ss_pred -HHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-H
Confidence 99999999999999999999998883 3333333455577667 999999999999887775222223333 8
Q ss_pred HHhcCCHhHHHHHHHHHhhc----------CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHH
Q 048034 313 LYAKECFSALSYLAHRVFTT----------DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSA 373 (558)
Q Consensus 313 l~~~~~~~~a~~l~~~~~~~----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 373 (558)
+..+|++++|...++.+... +|+++.++.+++.+....|+ +|.+++.++.+.+|+++..
T Consensus 221 ~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 221 HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 99999999999999987776 58899999999988888998 8999999999999997753
No 154
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.52 E-value=4.1e-13 Score=111.82 Aligned_cols=108 Identities=21% Similarity=0.158 Sum_probs=98.5
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPN-------DSR-----LWIAMAQCYETEQLHMLEEAIKCYRRAANC-- 451 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~-------~~~-----~~~~la~~~~~~~~~~~~~A~~~~~~al~~-- 451 (558)
...+..+|..+...|+|++|+..|+++++++|+ +.. +|.++|.++.. +|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~--Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG--LRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhh
Confidence 356889999999999999999999999999999 544 99999999999 99999999999999999
Q ss_pred -----CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 452 -----NDSEAIAL----NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 452 -----~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
+|++..+| +++|.++..+|++++|+..|++++++.+......+.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999976654444444
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.50 E-value=7e-13 Score=107.89 Aligned_cols=121 Identities=29% Similarity=0.514 Sum_probs=109.9
Q ss_pred CCCC-hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 333 DKYR-PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 333 ~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
+|.. +.+++.+|.++...|++++|+.+|++++...|.+. .+++.+|.++...|++++|+.+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~ 68 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQK 68 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------------HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3443 67899999999999999999999999999988744 4688999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 470 (558)
++...|.++.++..+|.++.. .|++++|+..|++++..+|.++.++..++.++...|
T Consensus 69 ~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 69 ALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999 999999999999999999999999999999987764
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=4e-13 Score=120.09 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=129.7
Q ss_pred hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh------cCCCCHH
Q 048034 348 SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF------LQPNDSR 421 (558)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~------~~p~~~~ 421 (558)
...|++++|...++.... +|.. ...++..+|.++...|++++|+.+|++++. ..+....
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 67 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPAT--------------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTT--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHH--------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 467899999996655543 4431 346899999999999999999999999998 4445577
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANC---NDS----EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~---~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
++..+|.++.. .|++++|+..+++++.+ .++ ...++..+|.++...|++++|+.+++++++..+... ...
T Consensus 68 ~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~ 144 (203)
T 3gw4_A 68 ALHQVGMVERM--AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQV 144 (203)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHH
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chH
Confidence 89999999999 99999999999999987 342 345899999999999999999999999998654322 112
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 495 NMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
....++..+|.++...|++++|..++++++++
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23456788999999999999999999999875
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.50 E-value=1.9e-13 Score=113.75 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=85.1
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
.++.++..++.+|..+...|++++|+.+|++++..+|++. .+|+.+|.++...|++++|+.+|++
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRR 68 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3455677777777777777777777777777777777643 3577777777777777777777777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHH
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS-----EAIALNQLAKLHH 467 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~ 467 (558)
++.++|+++.++..+|.++.. .|++++|+..|++++.++|+ +..+...+..+..
T Consensus 69 al~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 69 ALELDGQSVKAHFFLGQCQLE--MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777 77777777777777777665 4445555544443
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.50 E-value=1.9e-14 Score=145.86 Aligned_cols=152 Identities=15% Similarity=0.150 Sum_probs=133.2
Q ss_pred hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---------
Q 048034 349 LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND--------- 419 (558)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~--------- 419 (558)
..+++++|+..|++++...|. ....+..+|..+...|++++|+..|++++.++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~---------------~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~ 310 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLE---------------QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK 310 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHH---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHH
Confidence 566777888888777776665 44578999999999999999999999999999998
Q ss_pred ------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC
Q 048034 420 ------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 493 (558)
Q Consensus 420 ------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 493 (558)
..+|.++|.||.. +|++++|+.+|++++.++|++..+++++|.+|..+|++++|+..|+++++ ..
T Consensus 311 ~~~~~~~~~~~nla~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-------l~ 381 (457)
T 1kt0_A 311 ASESFLLAAFLNLAMCYLK--LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-------VN 381 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hC
Confidence 6899999999999 99999999999999999999999999999999999999999999999998 78
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHH-HHHHHh
Q 048034 494 PNMVEALIFLATHCRAHNRFEDAEV-YCTRLL 524 (558)
Q Consensus 494 ~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 524 (558)
|.+..++..++.++...|++++|.. .|++++
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 444444
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=1.2e-12 Score=106.36 Aligned_cols=117 Identities=31% Similarity=0.443 Sum_probs=111.2
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
..+++.+|.++...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+..+++++...|.++.++..+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
+...|++++|+.+|+++++ ..|.+..++..+|.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE-------LDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999998 57888999999999987765
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.49 E-value=3.4e-13 Score=112.22 Aligned_cols=123 Identities=13% Similarity=0.047 Sum_probs=106.8
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLA 463 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 463 (558)
.+...++.+|.++...|++++|+.+|++++..+|+++.++..+|.++.. .|++++|+..|++++.++|+++.+++.+|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK--MQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHc
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAH 510 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~ 510 (558)
.++...|++++|+..|+++++..+... ......+...+..+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999654311 112345555555554443
No 161
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2e-13 Score=137.83 Aligned_cols=229 Identities=11% Similarity=-0.005 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHh
Q 048034 269 NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYS 348 (558)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~ 348 (558)
|......|..+...|+|++|++.|.++++..|...+.....+... .... ....++..+|.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~----------~~~~al~~l~~~y~ 66 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDD-------KRRN----------EQETSILELGQLYV 66 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCS-------HHHH----------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHH-------HHhh----------hHHHHHHHHHHHHH
Confidence 345667788889999999999999999998887654321100000 0000 01235678999999
Q ss_pred hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHH
Q 048034 349 LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ------PNDSRL 422 (558)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~ 422 (558)
..|++++|+.++.+++...+....+.. ...+...+|.++...|+++.|+.++++++... +....+
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKSKT---------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHHHH---------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 999999999999999988766544322 22356778999999999999999999998653 234678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCCh
Q 048034 423 WIAMAQCYETEQLHMLEEAIKCYRRAANC------NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM 496 (558)
Q Consensus 423 ~~~la~~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 496 (558)
+..+|.+|.. .|++++|+.++++++.. .+....++..+|.+|...|++++|..++++++.............
T Consensus 138 ~~~la~~~~~--~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 138 SIKLATLHYQ--KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHH--ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 8999999999 99999999999998765 233456899999999999999999999999998654332111123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 497 VEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 497 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
...+..+|.++...|++++|..+|.++++
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677789999999999999999999976
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.48 E-value=2.9e-13 Score=109.99 Aligned_cols=102 Identities=16% Similarity=0.099 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
..++.+|..+...|++++|+..|+++++.+|++. .+|+.+|.++...|++++|+..|+++++++|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE---------------EAWRSLGLTQAENEKDGLAIIALNHARMLDP 82 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4577888888888888888888888888888854 4678888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 048034 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 456 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 456 (558)
+++.++..+|.++.. .|++++|+..|+++++.+|.+.
T Consensus 83 ~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 83 KDIAVHAALAVSHTN--EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp TCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888 8888888888888888888754
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.48 E-value=2.9e-13 Score=116.46 Aligned_cols=128 Identities=12% Similarity=0.089 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHcc--------CcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHH
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKL--------NKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHY 408 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 408 (558)
+..+...|..++..|++++|+.+|.+++.+ +|.... +..+. |....+|+++|.+|..+|++++|+.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE-WVELD----RKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH-HHHHH----HTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH-HHHHH----HHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 567889999999999999999999999998 343321 11111 44667899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCC
Q 048034 409 FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA-IALNQLAKLHHALGR 471 (558)
Q Consensus 409 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~ 471 (558)
+++++.++|+++.+|+.+|.++.. +|++++|+..|++++.++|+++ .+...++.+....++
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIA--AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHH--HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999998 667777777655443
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=1.3e-12 Score=105.17 Aligned_cols=114 Identities=16% Similarity=0.076 Sum_probs=108.2
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
....++.+|..+...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+..+++++...|.++.++..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK--KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh--hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHC 507 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 507 (558)
++...|++++|+..++++++ ..|.+..++..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK-------HEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT-------TCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH-------cCCCCHHHHHHHHHhh
Confidence 99999999999999999998 7788899988888775
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.47 E-value=1.2e-12 Score=105.36 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
+..++.+|..+...|++++|+.+|++++..+|.+. .+++.+|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999998854 478899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
|+++.++..+|.++.. .|++++|+..|++++..+|+++.++..++.+.
T Consensus 69 ~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 69 PDWGKGYSRKAAALEF--LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999 99999999999999999999999999888775
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.47 E-value=3e-13 Score=109.93 Aligned_cols=95 Identities=14% Similarity=-0.005 Sum_probs=93.1
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
.++.+|..+...|++++|+..|+++++.+|+++.+|..+|.++.. .|++++|+.+|+++++++|+++.+++.+|.++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE--NEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHH
Q 048034 468 ALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 468 ~~g~~~~A~~~~~~al~ 484 (558)
..|++++|+..|+++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999998
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.47 E-value=4.6e-14 Score=143.09 Aligned_cols=148 Identities=12% Similarity=0.080 Sum_probs=121.2
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHH----HHHHhchhccccchHHHHHhHHHHHHcCCHHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS----AWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYAL 406 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 406 (558)
...|..+..+..+|..+...|++++|+.+|++++.++|.+.. ....+. +....+|+++|.+|..+|++++|+
T Consensus 262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~----~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE----SFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHH
Confidence 334455778999999999999999999999999999988620 000000 112468999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Q 048034 407 HYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF-YYKKDLE 484 (558)
Q Consensus 407 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~ 484 (558)
.+|++++.++|+++.+|+.+|.+|.. +|++++|+.+|+++++++|++..++..++.++..++++++|.. .|.+++.
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~--~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLL--MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 9999999999999999999999999999999999999988864 4454444
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.46 E-value=2.6e-13 Score=121.31 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=118.5
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
..+.++..+|.++...|++++|+.+|++++.+....... +....++..+|.++...|++++|+.++++++.
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---------TAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346788999999999999999999999999854332111 12456899999999999999999999999998
Q ss_pred c---CCCC----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 415 L---QPND----SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND--SE----AIALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 415 ~---~p~~----~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
+ .+++ ..++..+|.++.. .|++++|+.++++++...+ .+ ..++..+|.++...|++++|+.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 95 LLASLPEDPLAASANAYEVATVALH--FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7 4433 4578999999999 9999999999999997632 12 23678999999999999999999999
Q ss_pred HHHHHHh
Q 048034 482 DLERMEA 488 (558)
Q Consensus 482 al~~~~~ 488 (558)
+++....
T Consensus 173 al~~~~~ 179 (203)
T 3gw4_A 173 ARDIFAE 179 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9997653
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.46 E-value=3.7e-13 Score=115.80 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=107.6
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFL------------------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 447 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~ 447 (558)
...+..+|..++..|++++|+..|++++.+ +|.+..+|.++|.+|.. +|++++|+..+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN--IGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH--HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 457889999999999999999999999998 67777899999999999 9999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH-HHHHHHHHHHHHcCCH
Q 048034 448 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV-EALIFLATHCRAHNRF 513 (558)
Q Consensus 448 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~ 513 (558)
++.++|.++.+++.+|.++..+|++++|+..|+++++ ..|.+. .+...++.+....++.
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR-------NHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 578877 6676777776555433
No 170
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.46 E-value=1.9e-10 Score=117.11 Aligned_cols=328 Identities=10% Similarity=-0.022 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHH------------hhcCC--C--CchHHHHHH
Q 048034 177 FILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDI------------LNSIN--L--NNHWMKDFF 240 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------~~~l~--~--~~~~~~~~~ 240 (558)
...|-.+...+-.|+++.+..+|++++...| +.+.|............ +..++ . +.-|...
T Consensus 15 R~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y-- 91 (493)
T 2uy1_A 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY-- 91 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH--
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH--
Confidence 3444444444444888888889999888888 77788776554422110 11111 1 1222211
Q ss_pred HHHHHH----HHhchHHHHHHHHHHHhhcCCChH-HHHHHHHHH-------------HHcccHHHHHHHHHHHHHcCCC-
Q 048034 241 LASTYQ----ELRMHNEALTKYEYLQGTFGFSNY-LQAQIAKAQ-------------YSLREFEQVEVVFEELLRNDPY- 301 (558)
Q Consensus 241 ~a~~~~----~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~a~~~-------------~~~~~~~~A~~~~~~~l~~~p~- 301 (558)
+..+. ..++.+.+..+|++++...+.+.. +|......- ...+.+..|...|+.+....+.
T Consensus 92 -i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 92 -IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp -HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 22211 356778888899999884322222 111111110 1123444555555555543222
Q ss_pred CcchHHHHHHHHHhcCC---------HhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHH
Q 048034 302 RVEDMDMYSNVLYAKEC---------FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS 372 (558)
Q Consensus 302 ~~~~~~~~~~~l~~~~~---------~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (558)
....+..+... ..++ ......++++++...|..+..|+..+..+...|+.++|...|++|+.. |....
T Consensus 171 s~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF 247 (493)
T ss_dssp SHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH
T ss_pred cHHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH
Confidence 22223222222 2221 234677899999999999999999999999999999999999999999 99887
Q ss_pred HHHHhchhcc-------------------------ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 048034 373 AWTLMGHEYK-------------------------SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMA 427 (558)
Q Consensus 373 ~~~~~~~~~~-------------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 427 (558)
.|...+.... +....+|...+....+.+..+.|...|.+| ...+....+|...|
T Consensus 248 l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A 326 (493)
T 2uy1_A 248 LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCA 326 (493)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHH
Confidence 7766554310 112256777777777788899999999999 44334567777777
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 428 QCYETEQLH-MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 428 ~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
.+-.. .+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++. .....+......
T Consensus 327 ~lE~~--~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----------k~~~lw~~~~~f 393 (493)
T 2uy1_A 327 FIEYY--ATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----------KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHH--HHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----------CBHHHHHHHHHH
T ss_pred HHHHH--HCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 76665 55 59999999999999889888888888888888999999999888862 236677777777
Q ss_pred HHHcCCHHHHHHHHHHHhc
Q 048034 507 CRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 507 ~~~~g~~~~A~~~~~~al~ 525 (558)
-...|+.+.+...+++++.
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7888999999888888874
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-12 Score=109.30 Aligned_cols=124 Identities=15% Similarity=0.041 Sum_probs=112.5
Q ss_pred hcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFR 410 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 410 (558)
..+|.....++.+|..+...|++++|+.+|+++++.+|++.. ...+|+.+|.+|...|++++|+.+|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD------------QAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH------------HHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 345678899999999999999999999999999999987421 14578999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048034 411 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA 468 (558)
Q Consensus 411 ~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 468 (558)
+++..+|+++.++..+|.++.. .|++++|+.+|++++..+|++..++..++.+...
T Consensus 90 ~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 90 KAIEKDGGDVKALYRRSQALEK--LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHhhCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999 9999999999999999999999999888877543
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-12 Score=108.18 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=109.7
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 459 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 459 (558)
+.+...++.+|..+...|++++|+.+|++++...|++ ..++..+|.++.. .|++++|+.++++++..+|.++.++
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK--LEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHhhCccCHHHH
Confidence 3466789999999999999999999999999999998 8999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH
Q 048034 460 NQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA 509 (558)
Q Consensus 460 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 509 (558)
+.+|.++...|++++|+.+|+++++ ..|.+..++..++.+..+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVS-------LEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999998 678888888888877544
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.42 E-value=5.8e-14 Score=142.88 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=120.5
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
..+++.+|..+...|++++|+.+|+++++++|+++.+|.++|.+|.. +|++++|+..|+++++++|+++.+++++|.+
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHhccCCC
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH--CRAHNRFEDAEVYCT-----------RLLDYTGP 529 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~~~ 529 (558)
|..+|++++|+..|+++++ ..|.+..++..++.+ +...|++++|++.++ +++.++|.
T Consensus 84 ~~~~g~~~eA~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHH-------HSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 9999999999999999999 567778888888888 889999999999999 77776543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.41 E-value=5e-12 Score=103.82 Aligned_cols=120 Identities=17% Similarity=0.055 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP 417 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p 417 (558)
..++.+|..+...|++++|+..|++++..+|++.. ...+++.+|.++...|++++|+.+|++++...|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46778999999999999999999999999888542 125788999999999999999999999999999
Q ss_pred CC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 048034 418 ND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGR 471 (558)
Q Consensus 418 ~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 471 (558)
++ +.++..+|.++.. .|++++|+..|++++...|+++.+......+....++
T Consensus 71 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYG--EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp TSTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred CCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 98 8889999999999 9999999999999999999988776666655544443
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6.4e-12 Score=126.68 Aligned_cols=210 Identities=10% Similarity=0.005 Sum_probs=166.1
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCCh-----------------HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSN-----------------YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV 303 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 303 (558)
.|..+...|++++|++.|.++++..|... .++..+|.+|...|++++|++++.+++...+...
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 48889999999999999999999877543 2577899999999999999999999987655432
Q ss_pred chHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccc
Q 048034 304 EDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKS 383 (558)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 383 (558)
..... ..+...+|.++...|++++|+.++++++...+..... +
T Consensus 90 ~~~~~----------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~ 132 (434)
T 4b4t_Q 90 KSKTV----------------------------KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV---------F 132 (434)
T ss_dssp HHHHH----------------------------HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC---------S
T ss_pred chHHH----------------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc---------H
Confidence 22111 2456678899999999999999999998764332110 1
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL------QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN---DS 454 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~---~~ 454 (558)
....++..+|.+|...|++.+|+.++++++.. .+....++..+|.+|.. .|++++|..++++++... +.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK--LRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHhhcCCC
Confidence 13467889999999999999999999998764 23346788999999999 999999999999998763 22
Q ss_pred c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 455 E----AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 455 ~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
. ...+..+|.++...|++++|..+|.++++.....
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 2 3467788999999999999999999998865543
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.41 E-value=1.6e-12 Score=103.51 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 333 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
+|.++.+++.+|.++...|++++|+.+|+++++.+|.+. .+++.+|.++...|++++|+.+|+++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------------KYWLMKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 466677777788888888888888888888887777643 45777777888888888888888888
Q ss_pred HhcCCC--CHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCc
Q 048034 413 VFLQPN--DSRLWIAMAQCYETEQL-HMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 413 ~~~~p~--~~~~~~~la~~~~~~~~-~~~~~A~~~~~~al~~~~~~ 455 (558)
++..|. +..++..+|.++.. . |++++|+.++++++...|.+
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 67 INVIEDEYNKDVWAAKADALRY--IEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTSCCTTCHHHHHHHHHHHTT--CSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHhCcccchHHHHHHHHHHHHH--HhCCHHHHHHHHHHHhhcccCC
Confidence 888887 77888888888877 8 88888888888887777654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.41 E-value=4.4e-12 Score=104.12 Aligned_cols=116 Identities=15% Similarity=0.017 Sum_probs=103.3
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---AIALNQ 461 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~ 461 (558)
+++.+|..+...|++++|+..|++++...|+++ .++..+|.++.. .|++++|+..|++++...|++ +.+++.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA--TRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 578899999999999999999999999999988 899999999999 999999999999999999999 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCC
Q 048034 462 LAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNR 512 (558)
Q Consensus 462 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 512 (558)
+|.++..+|++++|+..|+++++ ..|++..+...+..+....++
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVAT-------QYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-------HSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-------HCCCChHHHHHHHHHHHHHhh
Confidence 99999999999999999999998 457777766666555544443
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.40 E-value=1.7e-13 Score=133.01 Aligned_cols=138 Identities=13% Similarity=0.074 Sum_probs=92.4
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS-----------------RLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
...++.+|..+...|++++|+.+|++++.+.|++. .+|.++|.+|.. +|++++|+.+|+++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~--~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK--LKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT--TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 35688999999999999999999999999999877 489999999999 99999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHhccC
Q 048034 449 ANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATH-CRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 449 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 527 (558)
+.++|++..+++++|.+|..+|++++|+..|+++++ ..|.+..++..++.+ ....+..+++...|.+++...
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-------l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-------YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999998 678889999999988 455677889999999999988
Q ss_pred CCcHH
Q 048034 528 GPEKE 532 (558)
Q Consensus 528 ~~~~~ 532 (558)
|.+..
T Consensus 330 p~~~~ 334 (338)
T 2if4_A 330 DEGGA 334 (338)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76554
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=2e-12 Score=106.19 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=106.4
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE-------AI 457 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~ 457 (558)
.+..++.+|.++...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+.++++++...|.+ +.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE--KGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH--hccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 456899999999999999999999999999999999999999999999 999999999999999998776 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcC
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHN 511 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 511 (558)
+++.+|.++...|++++|+.+|+++++ ..| +......++.+....+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA-------EHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH-------hCC-CHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 445 4777778887766544
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.40 E-value=1.6e-12 Score=103.59 Aligned_cols=105 Identities=15% Similarity=0.001 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 416 QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 416 ~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
+|+++.++..+|.++.. .|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++ ..|.
T Consensus 2 ~p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~~~~ 72 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYD--AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN-------VIED 72 (112)
T ss_dssp CCSSTTGGGGHHHHHHS--SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TSCC
T ss_pred CCCcHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCcc
Confidence 45556666666666666 66666666666666666666666666666666666666666666666666 4455
Q ss_pred --hHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCC
Q 048034 496 --MVEALIFLATHCRAH-NRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 496 --~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~ 529 (558)
...++..+|.++... |++++|++++++++...|+
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 566666666666666 6666666666666666554
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.39 E-value=2.2e-12 Score=110.33 Aligned_cols=139 Identities=17% Similarity=0.108 Sum_probs=119.2
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE---- 455 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~---- 455 (558)
..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++.. .|++++|+..+++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 4678999999999999999999999999875532 2578999999999 999999999999999875432
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 456 --AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 456 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
..++..+|.++...|++++|+.+++++++..+... ..+....++..+|.++...|++++|..++++++++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55889999999999999999999999998765432 224456788899999999999999999999998764
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.39 E-value=2.3e-12 Score=105.82 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=105.2
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
.+..++.+|.++...|++++|+.+|++++..+|.+. .+++.+|.++...|++++|+.+|++++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999998854 46889999999999999999999999999
Q ss_pred CCCC-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 048034 416 QPND-------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470 (558)
Q Consensus 416 ~p~~-------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 470 (558)
.|.+ +.++..+|.++.. .|++++|+.+|++++...| ++..+..++.+....+
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFK--EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 8877 8899999999999 9999999999999999988 5788888887766543
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.37 E-value=5.2e-12 Score=123.90 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=117.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH-----HHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHH
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL-----SAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRK 411 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 411 (558)
+..+..+|..+...|++++|+..|++++++.+... ..+..+. |.+..+|+++|.+|..+|++++|+.+|++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ----PVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH----HHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45688999999999999999999999998543321 0000000 34567899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 048034 412 SVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477 (558)
Q Consensus 412 a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 477 (558)
+++++|+++.+++.+|.+|.. +|++++|+..|+++++++|++..++..++.++..+++.+++..
T Consensus 299 al~~~p~~~~a~~~lg~~~~~--~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQG--LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999999999999998888765
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.36 E-value=1.2e-12 Score=127.15 Aligned_cols=146 Identities=10% Similarity=0.073 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchh---ccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHE---YKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
+..+..+|..+...|++++|+.+|++++.+.|++... ...+.. .......+|+++|.+|..+|++++|+.+|++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-QLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-TCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-hhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678899999999999999999999999999875410 000000 000011378999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH-HALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~ 485 (558)
.++|+++.+|+.+|.+|.. +|++++|+.+|+++++++|++..++..++.+. ...+..+++...|.+++..
T Consensus 258 ~~~p~~~~a~~~lg~a~~~--~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAE--LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999 99999999999999999999999999999984 4567788889999999873
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.36 E-value=5.1e-12 Score=123.94 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=117.0
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVF----------------LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~----------------~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
..+..+|..+...|++++|+..|+++++ ..|.+..+|.++|.+|.. +|++++|+.+++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK--MSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHH
Confidence 4688999999999999999999999998 778888999999999999 9999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 048034 451 CNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVY 519 (558)
Q Consensus 451 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 519 (558)
++|+++.+++.+|.+|..+|++++|+..|+++++ ..|.+..++..++.++...++++++...
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~-------l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE-------IAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 6788899999999999999998887653
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=3e-13 Score=137.63 Aligned_cols=127 Identities=16% Similarity=0.076 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
+..+..+|..+...|++++|+.+|+++++++|++. .+|+.+|.+|..+|++++|+.+|+++++++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 70 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDATRAIELD 70 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45667789999999999999999999999999854 578899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL--HHALGRDEEAAFYYK 480 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~ 480 (558)
|+++.++.++|.+|.. +|++++|+..|+++++++|++..++..++.+ +...|++++|+..++
T Consensus 71 p~~~~~~~~lg~~~~~--~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 71 KKYIKGYYRRAASNMA--LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999 9999999999999999999999999999988 888999999999998
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=5.1e-12 Score=107.95 Aligned_cols=139 Identities=22% Similarity=0.271 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 337 PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 337 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
..++..+|.++...|++++|+.++++++.+.+...... ....++..+|.++...|++++|+.++++++.+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA---------AERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999998865422111 123578899999999999999999999999875
Q ss_pred CCC------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 417 PND------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND------SEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 417 p~~------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+.. ..++..+|.++.. .|++++|+.++++++...+ ....++..+|.++...|++++|+.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTL--LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 442 5678999999999 9999999999999997632 2245889999999999999999999999998
Q ss_pred HH
Q 048034 485 RM 486 (558)
Q Consensus 485 ~~ 486 (558)
..
T Consensus 158 ~~ 159 (164)
T 3ro3_A 158 IS 159 (164)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.34 E-value=2e-12 Score=104.31 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=83.1
Q ss_pred hcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 048034 349 LKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQ 428 (558)
Q Consensus 349 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 428 (558)
..|++++|+.+|++++++.++++ .+..+++.+|.+|...|++++|+.+|+++++.+|+++.++..+|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGK------------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHH------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCc------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 46889999999999999842211 145689999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 048034 429 CYETEQLHMLEEAIKCYRRAANCNDSEAIALNQ 461 (558)
Q Consensus 429 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 461 (558)
++.. .|++++|+..|++++...|+++.+...
T Consensus 70 ~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 70 VLYN--LGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHH--HTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 9999 999999999999999999998876543
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.31 E-value=2.3e-12 Score=104.00 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=83.5
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 048034 398 MMHMPFYALHYFRKSVFL---QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE 474 (558)
Q Consensus 398 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 474 (558)
..|++++|+.+|++++++ +|+++.++..+|.++.. .|++++|+.+|+++++.+|+++.+++.+|.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT--LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 468999999999999999 58889999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCChHHHHH
Q 048034 475 AAFYYKKDLERMEAEEREGPNMVEALI 501 (558)
Q Consensus 475 A~~~~~~al~~~~~~~~~~~~~~~~~~ 501 (558)
|+..|+++++. .|.++.+..
T Consensus 80 A~~~~~~al~~-------~p~~~~~~~ 99 (117)
T 3k9i_A 80 GVELLLKIIAE-------TSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHH-------HCCCHHHHH
T ss_pred HHHHHHHHHHh-------CCCcHHHHH
Confidence 99999999983 466665543
No 190
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.31 E-value=4.5e-12 Score=105.32 Aligned_cols=92 Identities=11% Similarity=0.101 Sum_probs=80.8
Q ss_pred hhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCC----------HHHHHHHHHHHHhcCC
Q 048034 348 SLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM----------PFYALHYFRKSVFLQP 417 (558)
Q Consensus 348 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~a~~~~p 417 (558)
.+.+.+++|+..++++++++|++.. +|+++|.++...++ +++|+..|++|++++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~ae---------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP 77 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDAD---------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence 3567799999999999999999665 56666667766655 5699999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCcH
Q 048034 418 NDSRLWIAMAQCYETEQLH-----------MLEEAIKCYRRAANCNDSEA 456 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~ 456 (558)
++..+|+++|.+|.. +| ++++|+.+|++|++++|++.
T Consensus 78 ~~~~A~~~LG~ay~~--lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTS--FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp TCHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHH--hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 999999999999998 75 89999999999999999975
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.30 E-value=1.2e-08 Score=103.75 Aligned_cols=348 Identities=10% Similarity=0.030 Sum_probs=228.5
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccC--ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhh
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTG--KKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLR 169 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~--~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 169 (558)
.+|--+-..|=.|+++++..+++.+.. +.......|+.|. .+..+. ...+..+.+..-...
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~---~~~~~~--------------~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYV---RKVSQK--------------KFKLYEVYEFTLGQF 78 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHH---HHHC------------------CTHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH---HHhCch--------------HHHHHHHHHHHHHHc
Confidence 566667777777999999999999965 3223333344443 322110 011222222222223
Q ss_pred hCCCCchHHHHHHHHHHH----hcCChHHHHHHHHHHhhhCCCCHHH-HHHHHhhhcCH---------------------
Q 048034 170 KNGTMDPFILYLYGLVLK----DKGSENLARTVLVESVNSYPWNWNS-WLELQSLCTTI--------------------- 223 (558)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~--------------------- 223 (558)
..++.++.+|......+. .+|+.+.+..+|++++..-+.+.+- |..........
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~ 158 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQ 158 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHH
Confidence 345778888888887765 3577889999999999954433332 22221111000
Q ss_pred --HHhhcC-C--CCchHHHHHHHHHHHHHHhc---------hHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHH
Q 048034 224 --DILNSI-N--LNNHWMKDFFLASTYQELRM---------HNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVE 289 (558)
Q Consensus 224 --~~~~~l-~--~~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 289 (558)
...... . ....|. ..+-+..++ .......|++++...|..+.+|...+..+...|+.+.|.
T Consensus 159 ~y~~~~~~~~~~s~~~W~-----~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar 233 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAA-----RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAK 233 (493)
T ss_dssp HHHHHHHHHHTCSHHHHH-----HHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccHHHHH-----HHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 000000 0 001232 122222222 345678999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhh---------cCCCChhHHHHHHHHHhhcCChHHHHHHH
Q 048034 290 VVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFT---------TDKYRPESCCIIGNYYSLKGQHEKSVVYF 360 (558)
Q Consensus 290 ~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~---------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 360 (558)
..|++++.. |.+...+..++... ..+ .....+.+.... ..+....+|...+......++.+.|...|
T Consensus 234 ~i~erAi~~-P~~~~l~~~y~~~~-e~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~ 309 (493)
T 2uy1_A 234 KVVERGIEM-SDGMFLSLYYGLVM-DEE--AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLF 309 (493)
T ss_dssp HHHHHHHHH-CCSSHHHHHHHHHT-TCT--HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHhhc-chh--HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999 98765554443331 111 111112221110 01112356778888888888999999999
Q ss_pred HHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHH
Q 048034 361 RRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMH-MPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLE 439 (558)
Q Consensus 361 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~ 439 (558)
.+| . .|.. ....|...+.+....+ +.+.|...|+.+++..|+++..|...+..... .|+.+
T Consensus 310 ~~A-~-~~~~--------------~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~--~~~~~ 371 (493)
T 2uy1_A 310 IEL-G-NEGV--------------GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR--IGDEE 371 (493)
T ss_dssp HHH-T-TSCC--------------CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HTCHH
T ss_pred HHh-h-CCCC--------------ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--cCCHH
Confidence 999 4 3431 2235555566555555 69999999999999999999999888888888 99999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 048034 440 EAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 487 (558)
Q Consensus 440 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 487 (558)
.|...|+++ +.....|......-...|+.+.+...+++++..+.
T Consensus 372 ~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 372 NARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 999999998 34677888888888889999999999999998665
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.30 E-value=7.1e-12 Score=104.11 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=84.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML----------EEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
.+.+.+++|+..++++++++|+++.+|+++|.++.. .+++ ++|+..|+++++++|++..+++++|.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~--l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE--LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 456789999999999999999999999999999998 8775 5999999999999999999999999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHHHHhhhhcCCChH
Q 048034 467 HALG-----------RDEEAAFYYKKDLERMEAEEREGPNMV 497 (558)
Q Consensus 467 ~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~ 497 (558)
..+| ++++|+.+|+++++ .+|++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~-------l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD-------EQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH-------HCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH-------hCCCCH
Confidence 9885 89999999999999 677754
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.8e-11 Score=97.39 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=88.2
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE------AIA 458 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~ 458 (558)
+..+|+.+|.++...|++++|+..|++++.++|+++.++.++|.++.. .|++++|+..|++++.++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK--LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999 999999999999999999998 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
++.+|.++...|++++|+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 99999999999988877765543
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.15 E-value=3.4e-10 Score=86.21 Aligned_cols=84 Identities=29% Similarity=0.494 Sum_probs=80.0
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
+..+++.+|.++...|++++|+.+|++++...|.++.++..+|.++.. .|++++|+.+|++++..+|.++.++..+|.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcC
Q 048034 465 LHHALG 470 (558)
Q Consensus 465 ~~~~~g 470 (558)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 998765
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.11 E-value=6.9e-10 Score=88.90 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDL 483 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 483 (558)
.|+..|+++++.+|+++.++..+|.++.. .|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE--HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 048034 484 ERM 486 (558)
Q Consensus 484 ~~~ 486 (558)
+..
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 854
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.10 E-value=3.8e-10 Score=90.42 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 048034 354 EKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETE 433 (558)
Q Consensus 354 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 433 (558)
++|+..|+++++.+|++. .+|+.+|.+|...|++++|+.+|++++..+|+++.+|..+|.++..
T Consensus 2 ~~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 65 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG- 65 (115)
T ss_dssp CCHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-
Confidence 368899999999999854 5789999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 048034 434 QLHMLEEAIKCYRRAANCNDS 454 (558)
Q Consensus 434 ~~~~~~~A~~~~~~al~~~~~ 454 (558)
.|++++|+..|++++.+.|.
T Consensus 66 -~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 66 -QGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp -HTCHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhccc
Confidence 99999999999999998764
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.2e-10 Score=92.53 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCCh--
Q 048034 419 DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNM-- 496 (558)
Q Consensus 419 ~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-- 496 (558)
++..+..+|.++.. .|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|+++++ ..|.+
T Consensus 3 ~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFK--QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-------YTSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------SCSSTTS
T ss_pred hHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCccH
Confidence 45678899999999 99999999999999999999999999999999999999999999999998 67777
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 497 ----VEALIFLATHCRAHNRFEDAEVYCTR 522 (558)
Q Consensus 497 ----~~~~~~la~~~~~~g~~~~A~~~~~~ 522 (558)
..+++.+|.++...|+++.|+..+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 88888899999888888777766554
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=2.1e-09 Score=81.70 Aligned_cols=85 Identities=28% Similarity=0.370 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH
Q 048034 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV 497 (558)
Q Consensus 418 ~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 497 (558)
.++..+..+|.++.. .|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++ ..|.+.
T Consensus 7 ~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------~~p~~~ 77 (91)
T 1na3_A 7 NSAEAWYNLGNAYYK--QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-------LDPNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCH
T ss_pred ccHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCCH
Confidence 457889999999999 99999999999999999999999999999999999999999999999999 678889
Q ss_pred HHHHHHHHHHHHcC
Q 048034 498 EALIFLATHCRAHN 511 (558)
Q Consensus 498 ~~~~~la~~~~~~g 511 (558)
.++..+|.++...|
T Consensus 78 ~~~~~l~~~~~~~g 91 (91)
T 1na3_A 78 EAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998765
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.00 E-value=2.4e-09 Score=108.09 Aligned_cols=134 Identities=13% Similarity=0.052 Sum_probs=113.5
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFL-----QPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEA 456 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~ 456 (558)
...+..+..+|+|++|+..|++++++ .|++ ..++.++|.+|.. +|+|++|+.++++++.+ .|+++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~--~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY--LQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 34455677899999999999999875 3455 4578999999999 99999999999999976 45544
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 457 ---IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE-REGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 457 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
..+++||.+|..+|++++|+.+|++++++..... ..+|........++.++..+|.+++|...|.++.+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999887764 34466677788899999999999999999998865
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.00 E-value=5.2e-09 Score=86.76 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHH
Q 048034 400 HMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEA 475 (558)
Q Consensus 400 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A 475 (558)
+++++|+.+|+++.+....... +|.+|.. .+..++|+.+|+++.+. .++.+++++|.+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~--g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNS--QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCT--TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHc--CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4789999999999988754443 9999998 89999999999999987 678999999999999 8999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccC
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATHCRA----HNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 527 (558)
+.+|+++.+ ..++.+++.||.+|.. .+++++|+.+|+++.+..
T Consensus 81 ~~~~~~Aa~---------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACG---------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHH---------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc---------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999998 3568999999999999 999999999999999974
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.97 E-value=2.4e-09 Score=83.30 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=55.8
Q ss_pred ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 383 SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 383 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
|.++.+|+.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|.. .|++++|+..|++++.+.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER--LDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhhh
Confidence 34566788888888888888888888888888888888888888888888 8888888888888887754
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.97 E-value=2.9e-09 Score=82.78 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=65.3
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
.+|+++.+|+.+|.++.. .|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK--HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 479999999999999999 9999999999999999999999999999999999999999999999999854
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.90 E-value=2.6e-08 Score=82.52 Aligned_cols=122 Identities=18% Similarity=0.164 Sum_probs=102.7
Q ss_pred CChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048034 351 GQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCY 430 (558)
Q Consensus 351 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 430 (558)
+++++|+.+|+++.+.... .+. +|.+|...+..++|+.+|+++.+. .++.+++++|.+|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-----------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-----------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-----------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-----------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 5789999999999987633 234 899999999999999999999987 6899999999999
Q ss_pred HHH--hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHH
Q 048034 431 ETE--QLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHA----LGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLA 504 (558)
Q Consensus 431 ~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la 504 (558)
..- -.+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+ ..++.+...|+
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---------~g~~~A~~~l~ 136 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR---------LGSEDACGILN 136 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------TTCHHHHHHC-
T ss_pred HcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH---------CCCHHHHHHHh
Confidence 750 037999999999999987 678999999999999 9999999999999998 23455555554
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.87 E-value=8.7e-08 Score=91.01 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=106.3
Q ss_pred chHHHHHHHHHHHhcCC---hHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 175 DPFILYLYGLVLKDKGS---ENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 175 ~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
+++-+|+.|..+...++ ..+|+.+|+++++.+|.+..+|..++.+........ ..+.. .....
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~--~~~~~------------~~~~l 260 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQH--PLDEK------------QLAAL 260 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS--CCCHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccC--CCchh------------hHHHH
Confidence 56778999999887665 489999999999999999999988743321000000 00000 00001
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFT 331 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~ 331 (558)
..++... .++...|.++.++..++..+...|++++|+..+++++.++|.
T Consensus 261 ~~a~~a~-~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s------------------------------ 309 (372)
T 3ly7_A 261 NTEIDNI-VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS------------------------------ 309 (372)
T ss_dssp HHHHHHH-HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------------------------------
T ss_pred HHHHHHH-HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC------------------------------
Confidence 1222211 223567888999988998888889999999999999998864
Q ss_pred cCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCH
Q 048034 332 TDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 332 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 371 (558)
...+..+|.++...|++++|+..|.+|+.++|...
T Consensus 310 -----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 310 -----WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 45677889999999999999999999999999854
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.86 E-value=5.8e-09 Score=80.76 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=77.7
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR-LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHH 467 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 467 (558)
.+..|..+...|++++|+..|+++++.+|+++. ++..+|.++.. .|++++|+.+|++++.++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~------ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK--LGDWQKALNNYQSAIELNPDSPALQAR------ 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCTTSTHHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcHHHHHH------
Confidence 357899999999999999999999999999999 99999999999 999999999999999999999887744
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 048034 468 ALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 468 ~~g~~~~A~~~~~~al~~ 485 (558)
+.+.+++..|++++..
T Consensus 75 --~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYN 90 (99)
T ss_dssp --HHHHHHHHHHCCTTHH
T ss_pred --HHHHHHHHHHHHHhcc
Confidence 5667777777777663
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.85 E-value=7.1e-09 Score=80.27 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhhCCCCHH-HHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHHHHH
Q 048034 180 YLYGLVLKDKGSENLARTVLVESVNSYPWNWN-SWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEALTKY 258 (558)
Q Consensus 180 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 258 (558)
+.+|.++...|++++|+..|++++..+|.+.. +|..+ |.++...|++++|+..|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~l-------------------------g~~~~~~~~~~~A~~~~ 58 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLM-------------------------GNAYRKLGDWQKALNNY 58 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHH-------------------------HHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH-------------------------HHHHHHcCCHHHHHHHH
Confidence 56788888888888888888888888888887 77776 88888888888888888
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc
Q 048034 259 EYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV 303 (558)
Q Consensus 259 ~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 303 (558)
+++++.+|++..++.. +.+.+++..|+++...+|.+.
T Consensus 59 ~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 59 QSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 8888888888776633 677778888888777776653
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.85 E-value=2.2e-08 Score=101.00 Aligned_cols=130 Identities=16% Similarity=0.022 Sum_probs=109.1
Q ss_pred HHHHHhhcCChHHHHHHHHHHHcc-----CcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc--
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKL-----NKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL-- 415 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-- 415 (558)
.+..+..+|+|++|+..+++++.+ .|+++. ...++.+||.+|..+|+|++|+.++++++.+
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~------------~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY------------VLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 445577899999999999999975 355544 3467889999999999999999999999875
Q ss_pred ---CCCCH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 416 ---QPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEAI---ALNQLAKLHHALGRDEEAAFYYKK 481 (558)
Q Consensus 416 ---~p~~~---~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~ 481 (558)
.|+++ ..++++|.+|.. +|++++|+..|++|+.+ .|+++. ....++.++..++.+++|...|.+
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~--~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWH--AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 568999999999 99999999999999975 566654 667899999999999999999999
Q ss_pred HHHHH
Q 048034 482 DLERM 486 (558)
Q Consensus 482 al~~~ 486 (558)
+.+..
T Consensus 461 ~~~~~ 465 (490)
T 3n71_A 461 MREAA 465 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.84 E-value=9.4e-08 Score=90.76 Aligned_cols=69 Identities=17% Similarity=0.037 Sum_probs=36.2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 414 FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 414 ~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
...|.++.++..++..+.. .|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.|++++.+
T Consensus 271 ~~~~~~a~~~~alal~~l~--~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALV--KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3345555555555555555 55555555555555555542 344455555555555555555555555543
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.84 E-value=1.6e-07 Score=85.31 Aligned_cols=110 Identities=17% Similarity=0.036 Sum_probs=91.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHc-----CCHHHHH
Q 048034 413 VFLQPNDSRLWIAMAQCYETE---------QLHMLEEAIKCYRRAANCNDS--EAIALNQLAKLHHAL-----GRDEEAA 476 (558)
Q Consensus 413 ~~~~p~~~~~~~~la~~~~~~---------~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~-----g~~~~A~ 476 (558)
...+|+++..++-.|.+...- .++...+|...++++++++|+ ++.++..+|.+|... |+.++|.
T Consensus 145 ~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 145 SRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 345788887766666555320 022468899999999999999 677999999999996 9999999
Q ss_pred HHHHHHHHHHHhhhhcCCCh-HHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCC
Q 048034 477 FYYKKDLERMEAEEREGPNM-VEALIFLATHCRA-HNRFEDAEVYCTRLLDYTGP 529 (558)
Q Consensus 477 ~~~~~al~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 529 (558)
.+|+++++ .+|+. ..+++.+|..+.. .|++++|..++++++..+|.
T Consensus 225 ~~ferAL~-------LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 225 TAFEHLTR-------YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHH-------HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHH-------hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999 67864 9999999999988 49999999999999998654
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.81 E-value=1.9e-07 Score=84.84 Aligned_cols=178 Identities=13% Similarity=0.021 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHcc---------------------cHHHHHHHHHHHHHc--------CCCC
Q 048034 252 NEALTKYEYLQGTFGFSNYLQAQIAKAQYSLR---------------------EFEQVEVVFEELLRN--------DPYR 302 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~---------------------~~~~A~~~~~~~l~~--------~p~~ 302 (558)
.-.+..++.++..+|++..++...|..|..-. ++..|..+|.++... +|..
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~ 128 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGF 128 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 44567888888999999887666555554321 244566666665441 1110
Q ss_pred cchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhh-----cCC------hHHHHHHHHHHHccCcCCH
Q 048034 303 VEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSL-----KGQ------HEKSVVYFRRALKLNKNYL 371 (558)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~-----~~~------~~~A~~~~~~al~~~p~~~ 371 (558)
.+ -...+... .+-..+...+|.+++.++..|.+... .|. ...|...++++++++|+..
T Consensus 129 ~~--------~~~~~~~~---~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~ 197 (301)
T 3u64_A 129 TR--------EVFSGDEQ---RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQ 197 (301)
T ss_dssp HH--------HHTSSCHH---HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HH--------HHHhcchh---hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcc
Confidence 00 11112222 22333456678888888887776643 233 4789999999999999944
Q ss_pred HHHHHhchhccccchHHHHHhHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhc-CCHHHHHHH
Q 048034 372 SAWTLMGHEYKSIDYRAWYGLGQAYEMM-----HMPFYALHYFRKSVFLQPND-SRLWIAMAQCYETEQL-HMLEEAIKC 444 (558)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~~-~~~~~A~~~ 444 (558)
. ..+|..+|.+|... |+.++|..+|++|++++|+. ...++.+|..+.. . |++++|..+
T Consensus 198 ~-------------GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~--~~gd~~~a~~~ 262 (301)
T 3u64_A 198 E-------------GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI--PLNNRAGFDEA 262 (301)
T ss_dssp H-------------HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT--TTTCHHHHHHH
T ss_pred c-------------CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--hcCCHHHHHHH
Confidence 2 34788889999885 99999999999999999975 9999999999876 5 999999999
Q ss_pred HHHHHhcCCCc
Q 048034 445 YRRAANCNDSE 455 (558)
Q Consensus 445 ~~~al~~~~~~ 455 (558)
+++++...|..
T Consensus 263 L~kAL~a~p~~ 273 (301)
T 3u64_A 263 LDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCGGG
T ss_pred HHHHHcCCCCC
Confidence 99999988763
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.61 E-value=3e-07 Score=69.66 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 452 NDSEAIALNQLAKLHHALGR---DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 452 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
+|+++.++..+|.++...++ .++|...++++++ .+|+++.+++.+|..+++.|+|++|+.+|+++++.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-------LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 68899999999999987766 7999999999999 7899999999999999999999999999999999998
Q ss_pred CcHHHHHHHHHHHH
Q 048034 529 PEKETAKSMLRGMR 542 (558)
Q Consensus 529 ~~~~~~~~ll~~~~ 542 (558)
+ ......+...|.
T Consensus 75 ~-~~~~~~i~~~I~ 87 (93)
T 3bee_A 75 P-NLDRVTIIESIN 87 (93)
T ss_dssp T-TCCHHHHHHHHH
T ss_pred C-CccHHHHHHHHH
Confidence 7 333344444444
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.51 E-value=6.4e-07 Score=67.86 Aligned_cols=70 Identities=13% Similarity=0.091 Sum_probs=54.6
Q ss_pred cchHHHHHhHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 048034 384 IDYRAWYGLGQAYEMMHM---PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~ 455 (558)
.++..+..+|.++...++ .++|...++++++++|++++++..+|..++. .|+|++|+.++++++..+|.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~--~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI--SFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCC
Confidence 455677777777765554 6788888888888888888888888888888 888888888888888887763
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.50 E-value=6.9e-07 Score=88.77 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=92.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcH---
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFL-----QPND---SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEA--- 456 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~--- 456 (558)
..-+...|++++|+..+++++.+ .|++ ..++.++|.+|.. +|+|++|+.++++++.+ .|+++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~--~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN--LGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34456789999999999999975 3455 4578899999999 99999999999999975 34444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh-cCCChHHHHHHHHHHHHH
Q 048034 457 IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER-EGPNMVEALIFLATHCRA 509 (558)
Q Consensus 457 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~la~~~~~ 509 (558)
..++++|.+|..+|++++|+.+|+++++++....+ .+|....++.+|+.+...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998877643 335555566667766643
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.50 E-value=9.2e-07 Score=87.72 Aligned_cols=92 Identities=12% Similarity=0.004 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-hcCCChHHHHHHHHH
Q 048034 435 LHMLEEAIKCYRRAANC-----NDSEA---IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE-REGPNMVEALIFLAT 505 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~la~ 505 (558)
.|+|++|+..+++++.+ .|+++ .++.++|.+|..+|++++|+.+++++++...... ..+|+....+.+||.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 78999999999999875 45554 4789999999999999999999999999877654 345777888999999
Q ss_pred HHHHcCCHHHHHHHHHHHhcc
Q 048034 506 HCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 506 ~~~~~g~~~~A~~~~~~al~~ 526 (558)
+|..+|++++|..+|++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999999873
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=1.8e-06 Score=70.77 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhhhhcC-C-ChHHHHHHHHHHHHHcC
Q 048034 437 MLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG---RDEEAAFYYKKDLERMEAEEREG-P-NMVEALIFLATHCRAHN 511 (558)
Q Consensus 437 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~-~-~~~~~~~~la~~~~~~g 511 (558)
....+.+.|.+.+..++.+..+.+++|+++.+.+ +.++++..++..++ .+ | ...+++++||..+.+.|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-------~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-------HSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCccchHHHHHHHHHHHHHcc
Confidence 4556777788888888888899999999999988 56689999999888 33 5 56788999999999999
Q ss_pred CHHHHHHHHHHHhccCCCcHHH
Q 048034 512 RFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 512 ~~~~A~~~~~~al~~~~~~~~~ 533 (558)
+|++|..+++++++.+|.+...
T Consensus 86 ~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999998766543
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.46 E-value=2.1e-06 Score=66.85 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHH
Q 048034 455 EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETA 534 (558)
Q Consensus 455 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 534 (558)
++.-.+.+|..+...|++..|+..|+++++..............++..+|.++.++|++++|+.++++++.++|.+....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34567899999999999999999999999976543323457789999999999999999999999999999998886654
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.44 E-value=1.7e-06 Score=67.39 Aligned_cols=77 Identities=8% Similarity=0.013 Sum_probs=69.3
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ-------PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 457 (558)
++.-.+.+|..++..|+|..|+.+|++|++.. +..+.++..+|.++.+ +|++++|+..+++++.+.|++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~--~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ--QGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhcCCCCHH
Confidence 34567899999999999999999999999853 3457889999999999 99999999999999999999999
Q ss_pred HHHHHH
Q 048034 458 ALNQLA 463 (558)
Q Consensus 458 ~~~~la 463 (558)
+..+++
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 888876
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.42 E-value=6.9e-07 Score=88.61 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=79.0
Q ss_pred HHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcH---HHHH
Q 048034 397 EMMHMPFYALHYFRKSVFL-----QPNDS---RLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEA---IALN 460 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~-----~p~~~---~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~ 460 (558)
...|+|++|+..|++++++ .|+++ .++.++|.+|.. +|+|++|+.++++++.+ .|+++ ..++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~--~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY--MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3468999999999999874 45554 568899999999 99999999999999976 44444 4899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 461 QLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 461 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
++|.+|..+|++++|+.+|++++++.....
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999877654
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.40 E-value=2.8e-06 Score=69.59 Aligned_cols=96 Identities=14% Similarity=-0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHHH
Q 048034 402 PFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLH---MLEEAIKCYRRAANCN-D-SEAIALNQLAKLHHALGRDEEAA 476 (558)
Q Consensus 402 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~ 476 (558)
...+...|.+.+..++.+..+.+.+|.++.+ .+ +.++++..++..++.+ | +..++++++|..+.++|+|++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~--S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR--SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 4567778888888889999999999999999 88 6779999999999988 6 56789999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 477 FYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 477 ~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
.+++++++ ..|++..+....-.+
T Consensus 92 ~y~~~lL~-------ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQ-------TEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHH-------HCTTCHHHHHHHHHH
T ss_pred HHHHHHHh-------cCCCCHHHHHHHHHH
Confidence 99999999 678888776654433
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.38 E-value=5.7e-05 Score=76.74 Aligned_cols=180 Identities=11% Similarity=-0.026 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcC---------CHHHHHHHH
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMH---------MPFYALHYF 409 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~---------~~~~A~~~~ 409 (558)
.+..+-..+.+.|+.++|+..|+++....-. .+..+|..+-.++...+ ..+.|...|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~--------------pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf 93 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ--------------LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIF 93 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC--------------CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHH
Confidence 3555668889999999999999998764311 12334555555655444 368899999
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 048034 410 RKSVFLQ-PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERME 487 (558)
Q Consensus 410 ~~a~~~~-p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 487 (558)
++..... +-+..+|+.+...|.+ .|++++|...|+++.+.. ..+...+..+...|.+.|+.++|..+|++..+.
T Consensus 94 ~~M~~~G~~Pd~~tyn~lI~~~~~--~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-- 169 (501)
T 4g26_A 94 KQMIVDKVVPNEATFTNGARLAVA--KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-- 169 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 9887653 3367889999999999 999999999999988763 346778999999999999999999999998872
Q ss_pred hhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCcHHHHHHHHHH
Q 048034 488 AEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT-GPEKETAKSMLRG 540 (558)
Q Consensus 488 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ll~~ 540 (558)
+..| +...+..+-..+.+.|+.++|.+++++.-+.. .++...+..+...
T Consensus 170 ---G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~ 219 (501)
T 4g26_A 170 ---EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEW 219 (501)
T ss_dssp ---TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHH
T ss_pred ---CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 2334 46788889999999999999999999987532 2455565555443
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.37 E-value=0.00012 Score=74.42 Aligned_cols=182 Identities=9% Similarity=-0.011 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhc
Q 048034 271 LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLK 350 (558)
Q Consensus 271 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~ 350 (558)
++...-..+.+.|++++|+++|+++.+..-. -+..+|..+-.++...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~---------------------------------pd~~tyn~Li~~c~~~ 74 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ---------------------------------LSQYHYNVLLYVCSLA 74 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC---------------------------------CCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------------------------------CCHhHHHHHHHHHHhC
Confidence 3445567778899999999999998774311 1134455555555443
Q ss_pred C---------ChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Q 048034 351 G---------QHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ-PNDS 420 (558)
Q Consensus 351 ~---------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-p~~~ 420 (558)
+ ..++|...|++.....-. .+..+|..+...|.+.|++++|...|++..... .-+.
T Consensus 75 ~~~~~~~~~~~l~~A~~lf~~M~~~G~~--------------Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 75 EAATESSPNPGLSRGFDIFKQMIVDKVV--------------PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp CCCSSSSCCHHHHHHHHHHHHHHHTTCC--------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred CchhhhhhcchHHHHHHHHHHHHHhCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 3 368899999987764321 134578889999999999999999999987653 3468
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHH
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 499 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 499 (558)
..|+.+-..|.+ .|+.++|.+.|+++.+.. ..+...+..+...+.+.|+.++|..++++..+.. ..|+ ...
T Consensus 141 ~tyn~lI~~~~~--~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-----~~ps-~~T 212 (501)
T 4g26_A 141 RSYGPALFGFCR--KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-----RQVS-KST 212 (501)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----SSBC-HHH
T ss_pred ceehHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-----CCcC-HHH
Confidence 889999999999 999999999999998764 3357789999999999999999999999987631 3454 344
Q ss_pred HHHHHHHH
Q 048034 500 LIFLATHC 507 (558)
Q Consensus 500 ~~~la~~~ 507 (558)
+..+-..+
T Consensus 213 ~~~l~~~F 220 (501)
T 4g26_A 213 FDMIEEWF 220 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.36 E-value=2.2e-07 Score=76.51 Aligned_cols=140 Identities=11% Similarity=0.039 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhhchhHHhHHHHHHHcCCCCCCCCCCCCcccccCCCCccccccccCccccccccCccCCCCCCccccccc
Q 048034 10 ELRTAISQLNGRCLYSAAKWAAEQLVGIKQDPAKYTPSNTRFQRGSSSICRRFRTNEISSTLVAGVSYVSTPVMEEDEVV 89 (558)
Q Consensus 10 ~l~~~~~~~~~~~l~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 89 (558)
.|++.++++.+.|||++|+.++++|+++.+++....+ |. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s------------------------p~----------------~ 61 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS------------------------PP----------------Q 61 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC------------------------HH----------------H
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc------------------------HH----------------H
Confidence 3889999999999999999999999999754322111 00 1
Q ss_pred ch-hHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHh
Q 048034 90 DS-DFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTL 168 (558)
Q Consensus 90 ~~-~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (558)
+. ..+++|.++|..|+|.||...++++........+. +.. -... +... . -...
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~--------~s~-~~~~---~~~s----s----------~p~s 115 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT--------SKV-RPST---GNSA----S----------TPQS 115 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------------------------------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC--------CCc-cccc---cccC----C----------Cccc
Confidence 23 34578999999999999999999862111000000 000 0000 0000 0 0000
Q ss_pred hhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHH
Q 048034 169 RKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQ 217 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 217 (558)
. ..+.+..+-|.++.|+...|++.+|+..++.+-. .-..+.....|+
T Consensus 116 ~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~La 162 (167)
T 3ffl_A 116 Q-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLA 162 (167)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHH
T ss_pred c-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHH
Confidence 0 0134667899999999999999999998876422 123344444443
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.34 E-value=5.9e-06 Score=82.06 Aligned_cols=94 Identities=16% Similarity=0.084 Sum_probs=81.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-hcCCChHHHH
Q 048034 430 YETEQLHMLEEAIKCYRRAANC-----NDSEA---IALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE-REGPNMVEAL 500 (558)
Q Consensus 430 ~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~ 500 (558)
+.. +|++++|+..+++++.+ .|+++ .++.++|.+|..+|++++|+.+++++++...... ..+|.....+
T Consensus 297 ~~~--~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 297 LKA--HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHH--TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHh--hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 446 89999999999999976 34454 4889999999999999999999999999876654 4557777889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 501 IFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 501 ~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
++||.+|..+|++++|..+|+++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999986
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.19 E-value=2.9e-05 Score=62.35 Aligned_cols=122 Identities=14% Similarity=0.199 Sum_probs=101.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 415 LQPNDSRLWIAMAQCYETEQLHML------EEAIKCYRRAANCNDSE--------AIALNQLAKLHHALGRDEEAAFYYK 480 (558)
Q Consensus 415 ~~p~~~~~~~~la~~~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~ 480 (558)
+.|++++.|........+ .|+. ++-+..|++|+..-|.. ...|...|.. ...++.++|...|+
T Consensus 8 ~~p~~yd~W~~yl~llE~--~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEK--NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp --CCSHHHHHHHHHHHHH--HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eCCCCHHHHHHHHHHHHH--cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 578999999999999988 8888 88889999998876643 3467777755 56699999999999
Q ss_pred HHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhcc
Q 048034 481 KDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMAQS 546 (558)
Q Consensus 481 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~~~ 546 (558)
.++.. ....+.+|...|+...++|+..+|.+.+.+++.+.|...+.....++.+.....
T Consensus 85 ~a~~~-------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 85 MARAN-------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNLQKK 143 (161)
T ss_dssp HHHHH-------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHTTCS
T ss_pred HHHHH-------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhcCCC
Confidence 99983 455599999999999999999999999999999998888888777877765543
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.87 E-value=0.00017 Score=56.69 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHhhhhcC-C-ChHHHHHHHHHHHHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEE---AAFYYKKDLERMEAEEREG-P-NMVEALIFLATHCRA 509 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~-~-~~~~~~~~la~~~~~ 509 (558)
......+...|.+.+..++....+.+++|+++.+..+... ++..++..+. .. | ..-..++.||..+.+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-------~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHHH
Confidence 3445566667777777777778888888888888877665 7777777665 33 3 466788888888899
Q ss_pred cCCHHHHHHHHHHHhccCCCcHHH
Q 048034 510 HNRFEDAEVYCTRLLDYTGPEKET 533 (558)
Q Consensus 510 ~g~~~~A~~~~~~al~~~~~~~~~ 533 (558)
.|+|++|..+++.+++..|.+...
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999888766543
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.76 E-value=0.00041 Score=55.73 Aligned_cols=117 Identities=11% Similarity=-0.018 Sum_probs=93.4
Q ss_pred hcCCCChhHHHHHHHHHhhcCCh------HHHHHHHHHHHccCcCCH-HHHHHhchhccccchHHHHHhHHHHHHcCCHH
Q 048034 331 TTDKYRPESCCIIGNYYSLKGQH------EKSVVYFRRALKLNKNYL-SAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPF 403 (558)
Q Consensus 331 ~~~~~~~~~~~~lg~~~~~~~~~------~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 403 (558)
-..|.++++|..........|+. ++-+..|++|+..-|... ..| ..-...|...+.. ...++.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w--------rrYI~LWIrYA~~-~ei~D~d 77 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN--------ESFARIQVRFAEL-KAIQEPD 77 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC--------HHHHHHHHHHHHH-HHHHCGG
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH--------HHHHHHHHHHHHH-HHhcCHH
Confidence 35788899999999998888999 899999999998665431 111 1123456666644 5669999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 048034 404 YALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIA 458 (558)
Q Consensus 404 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 458 (558)
+|...|+.++.+....+.+|...|..-.+ +|+...|.+.+.+++.+.|.....
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiR--qgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELS--QGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cccHHHHHHHHHHHhccCCCcHHH
Confidence 99999999998888889999999999999 999999999999999999886553
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.72 E-value=0.0005 Score=54.10 Aligned_cols=97 Identities=13% Similarity=-0.014 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHHcCCHHHH
Q 048034 401 MPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE---AIKCYRRAANCN-D-SEAIALNQLAKLHHALGRDEEA 475 (558)
Q Consensus 401 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A 475 (558)
....+...|.+....++.+..+.+.+|+++.+ .....+ ++.+++..+..+ | .....++.+|..++++|+|++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~--S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR--TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT--SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 44556777888888788899999999999998 887766 999999998876 4 4567999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCChHHHHHHHHHH
Q 048034 476 AFYYKKDLERMEAEEREGPNMVEALIFLATH 506 (558)
Q Consensus 476 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 506 (558)
..+++.+++ ..|++..+......+
T Consensus 94 ~~~~~~lL~-------~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 94 LKYVRGLLQ-------TEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHH-------HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-------hCCCCHHHHHHHHHH
Confidence 999999999 678887776654433
No 228
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.63 E-value=0.018 Score=46.99 Aligned_cols=200 Identities=15% Similarity=0.097 Sum_probs=112.2
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHH-h-hCCCCCCchhchhHHHHHHHHHHhh
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIE-L-EGPLGKSDAVNRELISLERELSTLR 169 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~-~-~~~~~~~~~~~~~l~~~~~~l~~~~ 169 (558)
=..+++-++|-+|||.||+.+|.+.....+.+....|.+-..+-++.-.+++ + .+...+.+.+.-. ++...
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~-------~~~ff 107 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR-------IQEMF 107 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH-------HHTTS
T ss_pred HHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc-------cceee
Confidence 4668899999999999999999998887777766655544333222222222 1 1222222222221 22222
Q ss_pred hCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhh-h-cCHHHhhcCCC-CchHHHHHHHHHHHH
Q 048034 170 KNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSL-C-TTIDILNSINL-NNHWMKDFFLASTYQ 246 (558)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~-~~~~~~~~l~~-~~~~~~~~~~a~~~~ 246 (558)
-......+.+.++|.++.+.|+.++|+..|..+...+|-....-..+-.- + ...+.-+-... ....-..+.....-+
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~l 187 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEF 187 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHH
Confidence 22333456788899999999999999999999999998655443222111 0 00000000000 001111111010000
Q ss_pred HHhchHHHHHHHHHHHhhcCCCh-HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC
Q 048034 247 ELRMHNEALTKYEYLQGTFGFSN-YLQAQIAKAQYSLREFEQVEVVFEELLRNDPY 301 (558)
Q Consensus 247 ~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 301 (558)
..---+ +..++-.+.-|.-. ......|..++..|-.+++..+|..+.+.+|.
T Consensus 188 He~~s~---~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 188 HESLSP---SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHCCH---HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhccH---HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 000000 23333444455433 34455788899999999999999999999886
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.63 E-value=0.00015 Score=59.75 Aligned_cols=112 Identities=14% Similarity=0.024 Sum_probs=87.2
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS---------RLWIAMAQCYETEQLHMLEEAIKCYRRAANCN----- 452 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~---------~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~----- 452 (558)
.+++.-...+...|.|+.|+.....++.+..+++ .++..+|.+++. .++|..|...|+++++..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~--~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH--DKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 3556667778899999999999998776543322 477899999999 999999999999987541
Q ss_pred -C-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHH
Q 048034 453 -D-------------------SEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCR 508 (558)
Q Consensus 453 -~-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 508 (558)
+ .+.++.+.++.||.++|++++|+..++..-. ....+.+...||++|.
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~--------k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS--------RQRTPKINMLLANLYK 166 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG--------GGCCHHHHHHHHHHCC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc--------hhcCHHHHHHHHHHhc
Confidence 1 1236889999999999999999998776432 3456788888888763
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.31 E-value=0.15 Score=52.70 Aligned_cols=245 Identities=14% Similarity=-0.022 Sum_probs=140.0
Q ss_pred HhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHH
Q 048034 248 LRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAH 327 (558)
Q Consensus 248 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~ 327 (558)
.+++..-+..+.. .|.+....+..+.+....|+-.+|.....++.......++....+...+...|........
T Consensus 85 ~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~-- 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYL-- 158 (618)
T ss_dssp TTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHH--
T ss_pred CCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHH--
Confidence 4455544443332 3777888888888888888888888888777776666666555555555444443332222
Q ss_pred HHhhcCCCChhHHHHHHHHHhhcCChHHHHHHH-------------HHHHccCcCCHHHHHHhchhccccch-HHHHHhH
Q 048034 328 RVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYF-------------RRALKLNKNYLSAWTLMGHEYKSIDY-RAWYGLG 393 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~-------------~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~lg 393 (558)
.........|+...|.... ..++..+|.......... .+... .....++
T Consensus 159 --------------~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~---~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 159 --------------ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTT---GATDFTRQMAAVA 221 (618)
T ss_dssp --------------HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHS---CCCHHHHHHHHHH
T ss_pred --------------HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhcc---CCChhhHHHHHHH
Confidence 2222333333333332221 112223343322211100 00010 1223334
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 048034 394 QAYEMMHMPFYALHYFRKSVFLQPNDSRL----WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL 469 (558)
Q Consensus 394 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~----~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 469 (558)
.......+.+.|...+.+.....+-+... +..++.-... .+...++...+.+......++...-. ++....+.
T Consensus 222 ~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~-~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMRSQSTSLIER-RVRMALGT 298 (618)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHTCCCHHHHHH-HHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH--cCCChHHHHHHHhccccCCChHHHHH-HHHHHHHC
Confidence 44455568899999998775433333322 2233333333 44356777777776665544444333 33445567
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 470 GRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 470 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
|+++.|...|++.-. .........+++|+.+...|+.++|..+|.++..
T Consensus 299 ~d~~~a~~~~~~l~~-------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPM-------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCT-------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccc-------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999998876543 2234578899999999999999999999999986
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.20 E-value=0.24 Score=51.13 Aligned_cols=358 Identities=9% Similarity=-0.067 Sum_probs=186.3
Q ss_pred hhHHHHHHHhhcccchHHHHHHHhhcc-CChHHHHHHHHHHHHHchh-hHHHHHHhhCCCCCCchhchhHHHHHHHHHHh
Q 048034 91 SDFYLLAKSYFDCREYRRAAHVLRDQT-GKKSVFLRCYALYLAGEKR-KEEEMIELEGPLGKSDAVNRELISLERELSTL 168 (558)
Q Consensus 91 ~~~~~la~~~~~~~~~~rA~~~l~~~~-~~~~~~l~~y~~yl~~~~~-~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 168 (558)
.+.|.-|+..++.|++.++..+..... .+-..++. |.....+... ... ++..+
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL~~yl~-y~~l~~~l~~~~~~------------------------ev~~F 61 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLE-YRQITDDLMNQPAV------------------------TVTNF 61 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGGTTSTTHHHHH-HHHHHHTGGGCCHH------------------------HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCcHHHHH-HHHHHhCcccCCHH------------------------HHHHH
Confidence 467888999999999999998877653 33344442 2222221110 111 23334
Q ss_pred hhCCCCchHHHHHHHHHHHh---cCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHH
Q 048034 169 RKNGTMDPFILYLYGLVLKD---KGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTY 245 (558)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 245 (558)
+...|..|..-.+....... .+++..-+.+|.. .|.+...-+.. ..+.
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~-------------------------~~A~ 112 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNY-------------------------YYAK 112 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHH-------------------------HHHH
T ss_pred HHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHH-------------------------HHHH
Confidence 44456667666665554433 3445444443332 25444443332 5556
Q ss_pred HHHhchHHHHHHHHHHHhhcCCC------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHH
Q 048034 246 QELRMHNEALTKYEYLQGTFGFS------------------NYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMD 307 (558)
Q Consensus 246 ~~~~~~~~A~~~~~~~~~~~p~~------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 307 (558)
...|+..+|......+-...... +..........+..|+...|..+...+ |... .
T Consensus 113 ~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l----~~~~---~ 185 (618)
T 1qsa_A 113 WNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM----PADY---Q 185 (618)
T ss_dssp HHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC----CGGG---H
T ss_pred HHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC----CHHH---H
Confidence 66666666665555554322222 222223344445555555544433221 1111 1
Q ss_pred HHHHHHH-hcCCHhHHHHHHHHHhhcCCCCh-hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccc
Q 048034 308 MYSNVLY-AKECFSALSYLAHRVFTTDKYRP-ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSID 385 (558)
Q Consensus 308 ~~~~~l~-~~~~~~~a~~l~~~~~~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 385 (558)
.++..+. ...+...+...... ..+... ......+......++.+.|...+.+.....+-.... .
T Consensus 186 ~~a~~~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~-----------~ 251 (618)
T 1qsa_A 186 TIASAIISLANNPNTVLTFART---TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQ-----------I 251 (618)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHH---SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHH-----------H
T ss_pred HHHHHHHHHHhChHhHHHHHhc---cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHH-----------H
Confidence 1111111 11122222111111 111111 123334455556668888988887765433222221 1
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKL 465 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 465 (558)
...+..++......+...++...+.+......++ ....-++..... .|+++.|...|.+.-..........+.+|..
T Consensus 252 ~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr--~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra 328 (618)
T 1qsa_A 252 QELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALG--TGDRRGLNTWLARLPMEAKEKDEWRYWQADL 328 (618)
T ss_dssp HHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHH--HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHH--CCCHHHHHHHHHHccccccccHhHHHHHHHH
Confidence 1233344444444554567777777766544333 333334444557 7999999998887655434557788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHH--------Hhhh---h-----cCC---C--hHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 048034 466 HHALGRDEEAAFYYKKDLERM--------EAEE---R-----EGP---N--MVEALIFLATHCRAHNRFEDAEVYCTRLL 524 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~--------~~~~---~-----~~~---~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 524 (558)
+...|+.++|..+|+++.... ...+ . ..+ . ........+..+...|....|...+..++
T Consensus 329 ~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~ 408 (618)
T 1qsa_A 329 LLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV 408 (618)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 999999999999988876510 0000 0 000 0 01123456777888999999998888887
Q ss_pred cc
Q 048034 525 DY 526 (558)
Q Consensus 525 ~~ 526 (558)
..
T Consensus 409 ~~ 410 (618)
T 1qsa_A 409 KS 410 (618)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.08 E-value=0.026 Score=45.14 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=61.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 453 DSEAIALNQLAKLHHALGRDE---EAAFYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 453 ~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
...+.+.+++|+++.+..+.+ +++..++..+. ..| ..-+.++.||..+.+.|+|++|..+.+.+++..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 456789999999999987654 67777777776 344 5778899999999999999999999999999997
Q ss_pred CcHHHH
Q 048034 529 PEKETA 534 (558)
Q Consensus 529 ~~~~~~ 534 (558)
.+....
T Consensus 109 ~n~QA~ 114 (144)
T 1y8m_A 109 NNKQVG 114 (144)
T ss_dssp CCHHHH
T ss_pred CcHHHH
Confidence 776543
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.00 E-value=0.013 Score=56.67 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=113.8
Q ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHH-cCCHHHHHHHHHHHHhcC
Q 048034 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEM-MHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 338 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~a~~~~ 416 (558)
.+.+.+|.+|...|++++-..++......-+..+.+.+. ..-..+-..+.. -+..+.-+..+..+++..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~----------k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAA----------KLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA 89 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHH----------HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHH----------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 466778888888888888888887765554444333221 122222233222 233344444445554433
Q ss_pred CCCHHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 417 PNDSRLW------IAMAQCYETEQLHMLEEAIKCYRRAANCN----DS--EAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 417 p~~~~~~------~~la~~~~~~~~~~~~~A~~~~~~al~~~----~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.+.-+.| ..+|..|.. .|+|.+|.+.+.+..+.. .. -.+++..-..+|...|++.++...+.++..
T Consensus 90 ~~~~r~flr~~l~~kL~~l~~~--~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 90 KQEKRTFLRQSLEARLIALYFD--TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2222222 378999999 999999999998887642 11 134677788999999999999999999987
Q ss_pred HHHhhhhcCCC-hHHHHHHHHHHHH-HcCCHHHHHHHHHHHhc
Q 048034 485 RMEAEEREGPN-MVEALIFLATHCR-AHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 485 ~~~~~~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 525 (558)
..... ..+|. .+.....-|.++. ..++|.+|..+|-.++.
T Consensus 168 ~~~ai-~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 168 TANAI-YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHS-CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hhccC-CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 54321 11221 2344445688888 89999999999998874
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.13 Score=53.95 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=82.7
Q ss_pred Hhc-hHHHHHHHHHHHhhcCCChHHHHHHHHHHH---HcccHHHHHHHHHHHHHc--------CCCCc----------ch
Q 048034 248 LRM-HNEALTKYEYLQGTFGFSNYLQAQIAKAQY---SLREFEQVEVVFEELLRN--------DPYRV----------ED 305 (558)
Q Consensus 248 ~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~l~~--------~p~~~----------~~ 305 (558)
.++ ++.|+..++++...+|.....+ ..+.+.. ...+--+|+.+..+.++. .+.+. ..
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 5889999999999888654332 2222221 123345666666666532 22221 23
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 048034 306 MDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (558)
Q Consensus 306 ~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 363 (558)
+..-+..+..+++++-|..++++++...|....+|+.|+.+|...|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4444666777899999999999999999999999999999999999999999887765
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.93 E-value=0.015 Score=45.75 Aligned_cols=95 Identities=13% Similarity=-0.016 Sum_probs=65.9
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCCh---HHHHHHHHHHhhhCCC-CHHHHHHHHhhhcCHHHhhcCC
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSE---NLARTVLVESVNSYPW-NWNSWLELQSLCTTIDILNSIN 230 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~l~ 230 (558)
..+|..+.++...-. .+..++..-|.+|.++.+..+. .+++.++...++..|. .-++++.
T Consensus 20 ~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYy--------------- 83 (134)
T 3o48_A 20 PQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYY--------------- 83 (134)
T ss_dssp HHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHH---------------
Confidence 345666666665543 4555778888888888777654 4688888888877763 2344443
Q ss_pred CCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHH
Q 048034 231 LNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQI 275 (558)
Q Consensus 231 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 275 (558)
+|..+.+.|+|++|....+.+++..|++..+....
T Consensus 84 ----------LAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 84 ----------LTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp ----------HHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ----------HHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 48888888888888888888888888877665443
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.91 E-value=0.018 Score=45.32 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=60.5
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhhhhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 453 DSEAIALNQLAKLHHALGRD---EEAAFYYKKDLERMEAEEREGP-NMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 453 ~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
.-.+.+.+++|+++.+..+. .+++..++..++ .+| ..-+.++.||..+.+.|+|++|..+.+.+++..|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 34577899999999988765 467777877776 345 5678899999999999999999999999999987
Q ss_pred CcHHHH
Q 048034 529 PEKETA 534 (558)
Q Consensus 529 ~~~~~~ 534 (558)
.+....
T Consensus 110 ~N~QA~ 115 (134)
T 3o48_A 110 NNKQVG 115 (134)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 776543
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.67 E-value=0.02 Score=45.81 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHccc---HHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHH
Q 048034 266 GFSNYLQAQIAKAQYSLRE---FEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCI 342 (558)
Q Consensus 266 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 342 (558)
..+..+.+.+|+++....+ ..+++.+++.++...|.+ .-+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---------------------------------~RdcLYy 82 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---------------------------------RRECLYY 82 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---------------------------------HHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---------------------------------hhHHHHH
Confidence 4466777777777776653 446777777777655542 2467888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHccCcCCHHHHH
Q 048034 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWT 375 (558)
Q Consensus 343 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 375 (558)
+|..+++.|+|++|..+.+..++..|++..+..
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999999999999999999999877643
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.50 E-value=0.26 Score=40.29 Aligned_cols=181 Identities=13% Similarity=0.111 Sum_probs=116.5
Q ss_pred HHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCCcchHHHHHHHHHhc
Q 048034 241 LASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN----DPYRVEDMDMYSNVLYAK 316 (558)
Q Consensus 241 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~l~~~ 316 (558)
.+..+.-.|.+..++-.+.+. +.....+..+.|+....+|..|+..++.+++- +|+- ++.
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~---------- 102 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DAR---------- 102 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHH----------
T ss_pred hhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccc----------
Confidence 477888899999998876542 55677788999999999999999999999942 2321 111
Q ss_pred CCHhHHHHHHHHHhhcCCCChhH-HHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcccc-----chHH--
Q 048034 317 ECFSALSYLAHRVFTTDKYRPES-CCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSI-----DYRA-- 388 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~-- 388 (558)
-...-.+|.+.+. +..+|.+..+.|+.++|+.+|.......|-.+..-.++-.--+|. +...
T Consensus 103 ----------~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~ 172 (242)
T 3kae_A 103 ----------IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTG 172 (242)
T ss_dssp ----------HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---------
T ss_pred ----------cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhh
Confidence 0122345666665 457899999999999999999999988877655432221111100 0000
Q ss_pred -------H-HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048034 389 -------W-YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW-IAMAQCYETEQLHMLEEAIKCYRRAANCNDS 454 (558)
Q Consensus 389 -------~-~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~-~~la~~~~~~~~~~~~~A~~~~~~al~~~~~ 454 (558)
+ ......+.... -...++-...-|.-...+ ...+..|+. +|..++...+|...-+.+|.
T Consensus 173 ~~~i~~~y~~d~~~lHe~~s-----~~~ikkY~n~iPGiGSY~va~aa~~yf~--lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 173 RRGIEEEYVSDSIEFHESLS-----PSLVKKYMEHVPGIGSYFISNAARRYFN--LGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp --CHHHHHHHHHHHHHHHCC-----HHHHHHHHTSTTTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHSTT
T ss_pred hccchhhhhhhHHHHHHhcc-----HHHHHHHHHhCCCchhHHHHHHHHHHHh--cccchhHHHHHHHHHhcCCC
Confidence 0 00001111110 033344444556554433 456778888 99999999999998888875
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.43 E-value=0.052 Score=52.40 Aligned_cols=180 Identities=9% Similarity=-0.062 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHH-HhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhchHHHH
Q 048034 177 FILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLEL-QSLCTTIDILNSINLNNHWMKDFFLASTYQELRMHNEAL 255 (558)
Q Consensus 177 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 255 (558)
.+.+.+|..|...|+.++-.+++.......+.-..+...- .+.+ .+.+..+ | +..+.-+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l--~~~~~~~--~----------------~~~~~~~ 79 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSL--VDMFLDM--D----------------AGTGIEV 79 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHH--HHHHTTS--C----------------CCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHH--HHHHhcC--C----------------CcHHHHH
Confidence 3678899999999999999999887765544433333211 0000 0111111 1 1122223
Q ss_pred HHHHHHHhhcC--CChH----HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHH
Q 048034 256 TKYEYLQGTFG--FSNY----LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRV 329 (558)
Q Consensus 256 ~~~~~~~~~~p--~~~~----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~ 329 (558)
+.+...++... .-.+ +-..+|..|+..|+|.+|...+.++++.-..-.+...
T Consensus 80 ~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~---------------------- 137 (394)
T 3txn_A 80 QLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL---------------------- 137 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh----------------------
Confidence 34444443211 1222 2346899999999999999999988874332111111
Q ss_pred hhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCc---CCHHHHHHhchhccccchHHHHHhHHHHH-HcCCHHHH
Q 048034 330 FTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNK---NYLSAWTLMGHEYKSIDYRAWYGLGQAYE-MMHMPFYA 405 (558)
Q Consensus 330 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~A 405 (558)
-.+++..-..+|...+++.++...+.+|..... ..+.. .......-|..+. ..++|..|
T Consensus 138 ------llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i-----------~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 138 ------LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV-----------QGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----------HHHHHHHHHHHHHHTTSCHHHH
T ss_pred ------HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-----------HHHHHHHhhHHHHHhccCHHHH
Confidence 146777788999999999999999999876531 11211 2345667788899 89999999
Q ss_pred HHHHHHHHhc
Q 048034 406 LHYFRKSVFL 415 (558)
Q Consensus 406 ~~~~~~a~~~ 415 (558)
..+|-+++..
T Consensus 201 ~~~F~eaf~~ 210 (394)
T 3txn_A 201 FSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.42 E-value=0.37 Score=51.85 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=47.1
Q ss_pred HHHHHHhchHHHHH-HHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhH
Q 048034 243 STYQELRMHNEALT-KYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSA 321 (558)
Q Consensus 243 ~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~ 321 (558)
......+++++|.+ .+.. -|+ .......+..+...|.+++|+...+.. .....+....|+++.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~~~-----------~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISPDQ-----------DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCCCH-----------HHHHHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCCCc-----------chheehhhhcCCHHH
Confidence 33456777777765 3311 110 112245566667777777776554211 011122333444444
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 048034 322 LSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (558)
Q Consensus 322 a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 363 (558)
|..+++. ..++..|..+|..+...++++.|+.+|.++
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4444322 133445555555555555555555555443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.029 Score=58.93 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=84.6
Q ss_pred Hccc-HHHHHHHHHHHHHcCCCCcchHHHHHHH--HHhc-CCHhHHHHHHHHHhhc--------CCCC----------hh
Q 048034 281 SLRE-FEQVEVVFEELLRNDPYRVEDMDMYSNV--LYAK-ECFSALSYLAHRVFTT--------DKYR----------PE 338 (558)
Q Consensus 281 ~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~--l~~~-~~~~~a~~l~~~~~~~--------~~~~----------~~ 338 (558)
..++ ++.|+.+|+++.+.+|.....+ ..+.+ +... .+.-++..++++.++. .+.+ ..
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455 6889999999999888653221 11221 1122 3455677777776532 2222 23
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHH
Q 048034 339 SCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKS 412 (558)
Q Consensus 339 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 412 (558)
.+..-+..+..+|+++-|+.+-++|+...|. ++..|+.|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs---------------eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD---------------SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch---------------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5566688888999999999999999999988 6678999999999999999999888765
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.30 E-value=0.4 Score=46.50 Aligned_cols=101 Identities=11% Similarity=-0.084 Sum_probs=83.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 393 GQAYEMMHMPFYALHYFRKSVFLQPND----------------------SRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 393 g~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
|......|+.+.|...+.+|+.+.... ..+...++..+.. .|++.+|+..+.+++.
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~--~g~~~~a~~~l~~~~~ 199 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA--CGRASAVIAELEALTF 199 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 444445688999999999998874321 0133456677778 9999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 451 CNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 451 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
.+|-+..++..+..++...|+..+|+..|+++.+.+....+..|.
T Consensus 200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999988777777775
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.15 Score=42.78 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=79.0
Q ss_pred HHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHH
Q 048034 245 YQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSY 324 (558)
Q Consensus 245 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~ 324 (558)
.++.|+++.|.+..+.+ ++...|..+|......|+++-|+.+|.++- .+..+.-++...|+.+....
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHHHHH
Confidence 57899999999988765 678899999999999999999999999872 34455666677788888887
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHH
Q 048034 325 LAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRA 363 (558)
Q Consensus 325 l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 363 (558)
+.+.+...... .....++...|+++++++.|.+.
T Consensus 82 la~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHHC
Confidence 77765554433 33455677889999999988664
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=1.5 Score=43.34 Aligned_cols=196 Identities=9% Similarity=-0.101 Sum_probs=115.5
Q ss_pred cccHHHHHHHHHHHHHc------CCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHh----hcC
Q 048034 282 LREFEQVEVVFEELLRN------DPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYS----LKG 351 (558)
Q Consensus 282 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~----~~~ 351 (558)
.|+++.|++.+..+-+. .+........+..+++..++++.+...+.-+.........+-..+.+... ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36777777766544432 12233445566677788888888777666554443333322222211111 111
Q ss_pred ChHHHHHHHHHHHccCcCCHHHHHHhchhcc-ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc-C-CCC----HHHHH
Q 048034 352 QHEKSVVYFRRALKLNKNYLSAWTLMGHEYK-SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL-Q-PND----SRLWI 424 (558)
Q Consensus 352 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-~-p~~----~~~~~ 424 (558)
..+.... ...+.....-. -|..|+ -...+....|+.+|...|++.+|...+.....- . ..+ ..++.
T Consensus 109 ~~d~~~~--~~~i~~l~~vt-----e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 109 SLDLNTR--ISVIETIRVVT-----ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp TTHHHHH--HHHHHCCSSSS-----SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred chhHHHH--HHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1111100 01111000000 000000 113456788999999999999999999887531 1 112 45677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 048034 425 AMAQCYETEQLHMLEEAIKCYRRAAN---CNDSEA----IALNQLAKLHHALGRDEEAAFYYKKDLERM 486 (558)
Q Consensus 425 ~la~~~~~~~~~~~~~A~~~~~~al~---~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 486 (558)
....+|.. .+++.+|...++++.. ..+..+ ..+...|.++...++|.+|..+|..+.+..
T Consensus 182 ~q~rl~l~--~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 182 EQMELSIL--KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHH--HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 78889999 9999999999998742 122222 366778999999999999999999888743
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.27 Score=41.16 Aligned_cols=80 Identities=19% Similarity=0.064 Sum_probs=56.5
Q ss_pred chHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
|++..+.++ ...|+++.|....+.. ++...|..+|..... .|+++-|..||+++-. +-.+..
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~--~gn~~lAe~cy~~~~D--------~~~L~~ 68 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALA--QGNASLAEMIYQTQHS--------FDKLSF 68 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTC--------HHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH--cCChHHHHHHHHHhCC--------HHHHHH
Confidence 344444444 5789999999987765 678999999999999 9999999999998633 233444
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKD 482 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~a 482 (558)
+|.-.|+.+.-...-+.+
T Consensus 69 Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 555566655444333333
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.55 E-value=0.91 Score=48.79 Aligned_cols=105 Identities=15% Similarity=0.042 Sum_probs=57.3
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH
Q 048034 396 YEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC--------NDSEAIALNQLAKLHH 467 (558)
Q Consensus 396 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~ 467 (558)
....|++++|.+..+. .++...|..+|..+.. .++++.|+.+|.++-.. ...+...+..++.+..
T Consensus 662 ~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~--~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQ--RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHH--cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 3456777777665432 2456677777777777 77777777777765211 1223334445555555
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 048034 468 ALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTR 522 (558)
Q Consensus 468 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 522 (558)
..|+++.|...|.+.-+ + ....++|.+.+++++|....++
T Consensus 735 ~~~~~~~A~~~~~~~g~---------~------~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 735 TTGKFNLAFNAYWIAGD---------I------QGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------H------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHcCC---------H------HHHHHHHHHcCChHHHHHHHHH
Confidence 55555555554433111 1 1123445666666666665554
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.33 Score=48.09 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDS--EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al~~----~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 494 (558)
+....|+.+|.. .|++.+|...+.....- .+. -...+.....++...+++..|...++++............
T Consensus 138 rl~~~La~i~e~--~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 138 RVTKDLVEIKKE--EGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 455778999999 99999999999886532 111 1347788899999999999999999997543321111001
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 495 NMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 495 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
-....+...|.++...++|.+|..+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 12345566899999999999999999998763
No 248
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.31 E-value=0.094 Score=52.43 Aligned_cols=80 Identities=18% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLH 466 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 466 (558)
+.+..||++......+..|..+|.+|..+.|++...++.+|.+... .|+.-+|+-+|-+++......+.+..++..++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~--~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS--KGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH--TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc--ccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 4677899999999999999999999999999999999999999999 99999999999999988777788888887777
Q ss_pred HH
Q 048034 467 HA 468 (558)
Q Consensus 467 ~~ 468 (558)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 249
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.14 E-value=0.29 Score=43.83 Aligned_cols=113 Identities=12% Similarity=-0.017 Sum_probs=83.9
Q ss_pred chhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhc---CHHH-h----
Q 048034 155 NRELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCT---TIDI-L---- 226 (558)
Q Consensus 155 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~---~~~~-~---- 226 (558)
...+..++..+...++..|.|+..-..+-..+.-.|+|+.|.+-++.+.+++|.....-..+..++. .-.. +
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~ 89 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 89 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3457778888888888999999999999999999999999999999999999987655433322221 1111 1
Q ss_pred --hcCCCCchHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCC
Q 048034 227 --NSINLNNHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGF 267 (558)
Q Consensus 227 --~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 267 (558)
.-+..|..|+..+..+......|+.++|...-.++++..|.
T Consensus 90 ~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 90 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11235667887777777777788888888877777776554
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.08 E-value=0.29 Score=52.72 Aligned_cols=97 Identities=5% Similarity=-0.037 Sum_probs=81.7
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFL----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN-DSEAIALNQ 461 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 461 (558)
..+..+-..|.+.|+.++|...|....+. ..-+...|+.+...|.+ .|+.++|.+.|+++.... ..+...|..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck--~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR--QGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 36788899999999999999999775432 34578899999999999 999999999999998764 346778888
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHH
Q 048034 462 LAKLHHALGRD-EEAAFYYKKDLER 485 (558)
Q Consensus 462 la~~~~~~g~~-~~A~~~~~~al~~ 485 (558)
+..++.+.|+. ++|..+|+++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 88899999985 7889999998873
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.89 E-value=0.27 Score=53.00 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANC----NDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 420 ~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
...++.+-..|.+ .|+.++|...|.+..+. ...+...|..+...|.+.|+.++|.++|++..+. +..|
T Consensus 127 ~~TynaLIdglcK--~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G~~P- 198 (1134)
T 3spa_A 127 QQRLLAFFKCCLL--TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----GLTP- 198 (1134)
T ss_dssp HHHHHHHHHHHHH--HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCC-
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCC-
Confidence 4568889999999 99999999999776533 2446789999999999999999999999999873 2345
Q ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccC-CCcHHH---------HHHHHHHHHHhcc
Q 048034 496 MVEALIFLATHCRAHNRF-EDAEVYCTRLLDYT-GPEKET---------AKSMLRGMRMAQS 546 (558)
Q Consensus 496 ~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~-~~~~~~---------~~~ll~~~~~~~~ 546 (558)
+...|..+-.++.+.|+. ++|.++++++.+.. .++.-. ...+++.+++...
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 577788888899999984 78999999887632 123222 2466777766644
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.43 E-value=2.4 Score=47.56 Aligned_cols=211 Identities=12% Similarity=0.053 Sum_probs=124.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC-c-----CCHHHHHHhchhc
Q 048034 308 MYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN-K-----NYLSAWTLMGHEY 381 (558)
Q Consensus 308 ~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p-----~~~~~~~~~~~~~ 381 (558)
.+...+...+..+-+.. ....-+.++...+.+|.++...|++++|..+|+++-.-- . .....+..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34444555565554443 334556778888999999999999999999999984321 1 1111111111000
Q ss_pred c--ccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCC-CCH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 048034 382 K--SIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQP-NDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDS 454 (558)
Q Consensus 382 ~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p-~~~----~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~ 454 (558)
. ......|+.+..++.+.+.++.+++..+.|++..+ ++. ..|..+-..+.. .|+|++|...+...-... .
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~--l~~ye~Ay~aL~~~pd~~-~ 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA--AGKFDAAHVALMVLSTTP-L 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH--HCCSGGGGHHHHHHHHSS-S
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh--hCCHHHHHHHHHhCCCHH-H
Confidence 0 12234567788899999999999999999998654 333 267888888888 999999988886543222 2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHH-HhhhhcCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHh
Q 048034 455 EAIALNQLAKLHHALGRDEEAAFY--------YKKDLERM-EAEEREGPNMVEALIFLATHCRAHNRFEDA-EVYCTRLL 524 (558)
Q Consensus 455 ~~~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 524 (558)
-..++..+...+.+.|..+.=+.. .+..+... ...... ...+..|-.|=-.+...|++.+| .-.|+++.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~-~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINV-ESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCcc-ccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 345566666666666655433221 11222110 011001 11123344455556667777655 44566665
Q ss_pred cc
Q 048034 525 DY 526 (558)
Q Consensus 525 ~~ 526 (558)
.+
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.14 Score=50.89 Aligned_cols=66 Identities=9% Similarity=-0.070 Sum_probs=56.2
Q ss_pred hHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 048034 386 YRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND-------SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 455 (558)
Q Consensus 386 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~ 455 (558)
...+..+-..|...+.++.|..+..++. .|.. .+.++.+|.++.- .++|.+|..++..|+...|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~--q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAI--QLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCcc
Confidence 3578888899999999999999999985 4432 4567889999999 999999999999999987754
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.09 E-value=0.26 Score=49.25 Aligned_cols=61 Identities=25% Similarity=0.306 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 422 LWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 422 ~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
.+..+|.+... ...+..|..+|.+|..+.|.++..++.+|.+....|+.-+|+-+|-+++.
T Consensus 154 ~l~~LGDL~RY--~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 154 CLVHLGDIARY--RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHcccHHHH--HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 56789999998 99999999999999999999999999999999999999999999999876
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.00 E-value=0.54 Score=42.14 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=38.0
Q ss_pred cCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHH
Q 048034 316 KECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS 372 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 372 (558)
.+...++...+...++.+|.++.....+..++...|++++|...++.+.+++|....
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 344444444444455555555666667777788888888888888888888887543
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.31 E-value=10 Score=40.75 Aligned_cols=266 Identities=9% Similarity=-0.062 Sum_probs=137.7
Q ss_pred HHHhchHHHHHHHHHHHhhc-CCChH----HHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------Cc----chHHHHH
Q 048034 246 QELRMHNEALTKYEYLQGTF-GFSNY----LQAQIAKAQYSLREFEQVEVVFEELLRNDPY------RV----EDMDMYS 310 (558)
Q Consensus 246 ~~~~~~~~A~~~~~~~~~~~-p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~----~~~~~~~ 310 (558)
...|+.++++..+.+.+... ..+.. +.+.+|.++...+ .+++.++...+..+.. .. .+...++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34567778888777766422 23333 3344455444444 4788888887764320 01 1222333
Q ss_pred HHHHhcCCHhHHHHHHHHHhhcCCCC--hhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHH
Q 048034 311 NVLYAKECFSALSYLAHRVFTTDKYR--PESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRA 388 (558)
Q Consensus 311 ~~l~~~~~~~~a~~l~~~~~~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 388 (558)
.++.-.++ +++...+..++..+... ..+-+.+|.++...|+-+.....+..+.....+ +.+-
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e---------------~vrR 526 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG---------------NITR 526 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH---------------HHHH
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH---------------HHHH
Confidence 33333333 34455555555433321 234567788888888876666666655543211 1122
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRL----WIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~----~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 464 (558)
...+|......|+.+.+....+..... .++.+ ...+|..|.. .|+...-...+..+..-..++..-.--+|.
T Consensus 527 ~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaG--TGn~~aIq~LL~~~~~d~~d~VRraAViaL 602 (963)
T 4ady_A 527 GLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAG--TGNNSAVKRLLHVAVSDSNDDVRRAAVIAL 602 (963)
T ss_dssp HHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 234555555677777776666655543 23333 2456777777 888655445777666543333332222333
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHH--cCC-HHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRA--HNR-FEDAEVYCTRLLDYTGPEKETAKSMLRGM 541 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~--~g~-~~~A~~~~~~al~~~~~~~~~~~~ll~~~ 541 (558)
.....|+.+.+...+....+ ..++.+.+..+..+-. .|+ ..+|+..+.+... | ++.......+..+
T Consensus 603 GlI~~g~~e~v~rlv~~L~~---------~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D-~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 603 GFVLLRDYTTVPRIVQLLSK---------SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-D-PVDFVRQAAMIAL 671 (963)
T ss_dssp HHHTSSSCSSHHHHTTTGGG---------CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-C-SSHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-C-CCHHHHHHHHHHH
Confidence 33345555433333332222 3345555554333322 333 2688888888875 4 4565655555555
Q ss_pred HHh
Q 048034 542 RMA 544 (558)
Q Consensus 542 ~~~ 544 (558)
+..
T Consensus 672 G~I 674 (963)
T 4ady_A 672 SMI 674 (963)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.14 Score=50.75 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHcCCHHHHHHHHHHHHh-----------cCCCCHHHHHHHHHHHHHHhcCCHHHHH----------HHHHHHHh---
Q 048034 395 AYEMMHMPFYALHYFRKSVF-----------LQPNDSRLWIAMAQCYETEQLHMLEEAI----------KCYRRAAN--- 450 (558)
Q Consensus 395 ~~~~~~~~~~A~~~~~~a~~-----------~~p~~~~~~~~la~~~~~~~~~~~~~A~----------~~~~~al~--- 450 (558)
.+...+++++|..+-...+. +++-.+.+|+.++.++.. .|+..+.. ..+-.++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~--~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHET--LARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH--hcccccccccccchhhHHHHHHHHHHHHh
Confidence 34566788888777665541 234456788888888888 88766532 22222222
Q ss_pred --cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 451 --CNDS-EAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 451 --~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.++. ....+..+-..|...+.+++|..+..++.- +.....+......++++|+++.-+++|.+|.+++..|+...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2222 244778888999999999999999998742 21111112235567778999999999999999999999876
Q ss_pred CCc
Q 048034 528 GPE 530 (558)
Q Consensus 528 ~~~ 530 (558)
|++
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 654
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.77 E-value=0.79 Score=44.40 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=76.7
Q ss_pred HHHHhhcCChHHHHHHHHHHHccCcCCHH------HHHHhchh-ccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcC
Q 048034 344 GNYYSLKGQHEKSVVYFRRALKLNKNYLS------AWTLMGHE-YKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQ 416 (558)
Q Consensus 344 g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 416 (558)
|......|+.+.|...+.+|+.+.....- .|..--.. +......+...++..+...|++.+|+..+.+++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34444568889999999999887532110 01100000 001112345567888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048034 417 PNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN 450 (558)
Q Consensus 417 p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~ 450 (558)
|-+-.+|..+..++.. .|+..+|+..|+++-.
T Consensus 202 P~~E~~~~~lm~al~~--~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 202 PYREPLWTQLITAYYL--SDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999988643
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.4 Score=47.27 Aligned_cols=95 Identities=15% Similarity=-0.002 Sum_probs=41.7
Q ss_pred HHHHhHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcH----HH
Q 048034 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQP---NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN--DSEA----IA 458 (558)
Q Consensus 388 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~--~~~~----~~ 458 (558)
++..+|..|...|+++.|.+.|.++..... .-..++.....++.. .+++..+...+.++.... ..++ ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~--~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF--YNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 344455555555555555555555443221 123344444444444 555555555555543321 1111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
....|.++...++|.+|...|-.+..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 22334444444555555555544443
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.22 E-value=3.2 Score=46.60 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=85.8
Q ss_pred HhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------------------
Q 048034 391 GLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCN------------------ 452 (558)
Q Consensus 391 ~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~------------------ 452 (558)
.+...+...+.++.+.. .....|.++..-+.+|.++.. .|++++|..+|+++-..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~--~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLK--SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHh--cCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666777766654 334567777777889999999 999999999998873210
Q ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 048034 453 -----DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMV----EALIFLATHCRAHNRFEDAEVYCTRL 523 (558)
Q Consensus 453 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 523 (558)
...+..|..+..++.+.|.++.+++..+.+++.. .+++. ..|..+=+.+...|+|++|...+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~------~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK------ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC------CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 1123467778888888999999999888888742 22222 24566777788889999998877654
Q ss_pred h
Q 048034 524 L 524 (558)
Q Consensus 524 l 524 (558)
-
T Consensus 965 p 965 (1139)
T 4fhn_B 965 S 965 (1139)
T ss_dssp H
T ss_pred C
Confidence 4
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.99 E-value=0.9 Score=44.71 Aligned_cols=103 Identities=11% Similarity=0.070 Sum_probs=78.5
Q ss_pred ChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHhc
Q 048034 336 RPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFL 415 (558)
Q Consensus 336 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 415 (558)
...++..+|.+|...|++++|.+.|.++........ .....+..+..++...+++..+..++.++...
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345788899999999999999999999876543321 12357788888999999999999999998654
Q ss_pred C--CCCH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048034 416 Q--PNDS----RLWIAMAQCYETEQLHMLEEAIKCYRRAANCN 452 (558)
Q Consensus 416 ~--p~~~----~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~ 452 (558)
. ..++ ......|..+.. .++|.+|...|-.++...
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~~l~--~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIHCLA--VRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHGGGG--TSCHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHhccC
Confidence 2 2222 334556777777 899999999998887654
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.87 E-value=12 Score=34.49 Aligned_cols=116 Identities=9% Similarity=-0.062 Sum_probs=70.3
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-----NDSEAIALNQLAK 464 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~ 464 (558)
..+..=|.+.++|++|+..+... +..+.+ .|++..|.....-.++. .+-+......+..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~--~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG--------------ALSFLK--AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHH--TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHH--CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34555566777888887765543 333344 45544444432222211 2233445555555
Q ss_pred HHHHcCCHH-HHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 048034 465 LHHALGRDE-EAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCT 521 (558)
Q Consensus 465 ~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 521 (558)
++......+ .=..+.+++++...+.+...-.++..+..+|..+.+.|++.+|..+|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 555433222 235677777776655544455789999999999999999999999885
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.36 E-value=21 Score=38.47 Aligned_cols=218 Identities=11% Similarity=-0.036 Sum_probs=119.0
Q ss_pred hchHHHHHHHHHHHhhcC---C---Ch----HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc--chHHHHHHHHHhc
Q 048034 249 RMHNEALTKYEYLQGTFG---F---SN----YLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV--EDMDMYSNVLYAK 316 (558)
Q Consensus 249 ~~~~~A~~~~~~~~~~~p---~---~~----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~l~~~ 316 (558)
|...+++..+...+.... . .. .+...+|.++.-.++ +++.+.+..++..+.... .+...++.++.-.
T Consensus 425 g~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 425 GFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp TTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 333467777777765432 0 12 123345555555554 466777777776443211 2233455556666
Q ss_pred CCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccccchHHHHHhHHHH
Q 048034 317 ECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAY 396 (558)
Q Consensus 317 ~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 396 (558)
++.+....+++.+.....+...-...+|......|+.+.+-...+..... .+ +.. .+.+-+.+|..|
T Consensus 504 gn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~d-p~v-----------Rygaa~alglAy 570 (963)
T 4ady_A 504 GKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DE-SLL-----------RYGGAFTIALAY 570 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SC-HHH-----------HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CC-HHH-----------HHHHHHHHHHHh
Confidence 88888888888877655444333445555566777777666665554432 22 211 122456788888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--CC-HH
Q 048034 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHAL--GR-DE 473 (558)
Q Consensus 397 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--g~-~~ 473 (558)
...|+...-...+..+..-..++.+-...+|..... .|+.+.+.+.+....+ ..++.+.+..+..+-.. |+ ..
T Consensus 571 aGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~ 646 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQ 646 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCH
T ss_pred cCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcH
Confidence 999996555557776665433344433344444444 5665444444433332 23455544444443332 33 36
Q ss_pred HHHHHHHHHHH
Q 048034 474 EAAFYYKKDLE 484 (558)
Q Consensus 474 ~A~~~~~~al~ 484 (558)
+++..+.+...
T Consensus 647 ~aid~L~~L~~ 657 (963)
T 4ady_A 647 SAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcc
Confidence 78887777764
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.47 E-value=0.0059 Score=59.42 Aligned_cols=241 Identities=9% Similarity=0.017 Sum_probs=148.0
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHHHHHHHhch
Q 048034 172 GTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLASTYQELRMH 251 (558)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 251 (558)
.-+.|.+|..+|......|+..+|++.|.++ .+|.+..-.... ..+.|.+
T Consensus 50 ~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~----------------------------A~~~~~~ 99 (624)
T 3lvg_A 50 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQA----------------------------ANTSGNW 99 (624)
T ss_dssp SCCCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHH----------------------------TTTSSCC
T ss_pred HhCCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHH----------------------------HHhCCCH
Confidence 3457889999999999999999999999876 445554333222 2223333
Q ss_pred HHHHHHHHHHHhh----------------------------cCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCc
Q 048034 252 NEALTKYEYLQGT----------------------------FGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRV 303 (558)
Q Consensus 252 ~~A~~~~~~~~~~----------------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 303 (558)
++-+.++..+-+. .|+.+.+ ...|.-++..|.|+.|.-+|..+
T Consensus 100 edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~i-q~VGDrcf~e~lYeAAKilys~i-------- 170 (624)
T 3lvg_A 100 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHI-QQVGDRCYDEKMYDAAKLLYNNV-------- 170 (624)
T ss_dssp TTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCT-HHHHHHHHHSCCSTTSSTTGGGS--------
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccH-HHHHHHHHHccCHHHHHHHHHhC--------
Confidence 3333333333221 1222222 23455555555555555444322
Q ss_pred chHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhccc
Q 048034 304 EDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKS 383 (558)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 383 (558)
..+..++.++..++++..|...+++ .+++.+|-.+.......+++.-|..+--..+-. ++.
T Consensus 171 sN~akLAstLV~L~~yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade------------- 231 (624)
T 3lvg_A 171 SNFGRLASTLVHLGEYQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE------------- 231 (624)
T ss_dssp CCCTTTSSSSSSCSGGGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC-------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH-------------
Confidence 1222344445555555555544333 345677777777777888877777665554432 332
Q ss_pred cchHHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC-CC------c
Q 048034 384 IDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAAN-CN-DS------E 455 (558)
Q Consensus 384 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~-~~-~~------~ 455 (558)
+-.+...|...|.+++-+..++.++.+..-...+...||.+|.+ -+.++-.+.++--.. ++ |. .
T Consensus 232 -----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK---Y~PeKlmEHlklf~sriNipKviracE~ 303 (624)
T 3lvg_A 232 -----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK---FKPQKMREHLELFWSRVNIPKVLRAAEQ 303 (624)
T ss_dssp -----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS---SCTTHHHHHHTTSSSSSCCTTTHHHHTT
T ss_pred -----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 22455678889999999999999999998899999999999986 455555554443211 11 22 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q 048034 456 AIALNQLAKLHHALGRDEEAAFY 478 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~ 478 (558)
...|..+..+|..-.+++.|+..
T Consensus 304 ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 304 AHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HhhHHHHHHHHhcchhHHHHHHH
Confidence 33677888888888888877653
No 265
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.31 E-value=33 Score=31.58 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHHhhcCChHHHHHHHH
Q 048034 335 YRPESCCIIGNYYSLKGQHEKSVVYFR 361 (558)
Q Consensus 335 ~~~~~~~~lg~~~~~~~~~~~A~~~~~ 361 (558)
.+|+.+..+|..|...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578999999999999999999998876
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.57 E-value=26 Score=29.77 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 472 DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 472 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
..++..+|.-.... +.+...+..|...|..+...|++.+|.+.|+..++.
T Consensus 95 ~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44555555544442 133444455555555555555555555555555554
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.20 E-value=20 Score=39.22 Aligned_cols=88 Identities=10% Similarity=-0.015 Sum_probs=66.4
Q ss_pred hHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC----------------
Q 048034 392 LGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-NDS---------------- 454 (558)
Q Consensus 392 lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-~~~---------------- 454 (558)
+...+...|.++.|. ..+...|.++..-+.+|.+|.. .|++++|..+|++|-.- ...
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~--~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLK--SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHH--TTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 556667788877654 4567778888888999999999 99999999999987421 110
Q ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 048034 455 ------EAIALNQLAKLHHALGRDEEAAFYYKKDLER 485 (558)
Q Consensus 455 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 485 (558)
....|..++.++.+.+-++-++...+.|++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1126677788888888888888888888873
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.09 E-value=44 Score=31.07 Aligned_cols=131 Identities=17% Similarity=0.111 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHhhcCChHHHHHHHHHHHccCcCCHHHHHHhchhcc----ccchHHHHHhH-HHHHHcCCHHHHHHH
Q 048034 334 KYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYK----SIDYRAWYGLG-QAYEMMHMPFYALHY 408 (558)
Q Consensus 334 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~~~~lg-~~~~~~~~~~~A~~~ 408 (558)
-.+|+.+..+|..|...+++.+|..+|- +..++ .+..+..+-..+. |.....+...+ ..|...++...|...
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~-s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~ 209 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKE-SPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTA 209 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTT-HHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCc-hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3578899999999999999999988883 22221 1112111111111 33344444433 456778888888776
Q ss_pred HHHHHh----cC------------------CCCHHH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC-CcHHHHHH
Q 048034 409 FRKSVF----LQ------------------PNDSRL-WIAMAQCYETEQLHM---LEEAIKCYRRAANCND-SEAIALNQ 461 (558)
Q Consensus 409 ~~~a~~----~~------------------p~~~~~-~~~la~~~~~~~~~~---~~~A~~~~~~al~~~~-~~~~~~~~ 461 (558)
+..-++ .. |..|.. ...+..+-.. .+. +..-...|+..++.+| .....+..
T Consensus 210 ~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q--~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~ 287 (336)
T 3lpz_A 210 YRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQ--KGSPDLFRQLKSKYEANLNELNGIWDTALEL 287 (336)
T ss_dssp HHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHH--SCCHHHHHHHHHHTHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 544332 12 223321 1112222223 443 3344455555666666 56667777
Q ss_pred HHHHHHHc
Q 048034 462 LAKLHHAL 469 (558)
Q Consensus 462 la~~~~~~ 469 (558)
+|.+|+..
T Consensus 288 IG~~YFgi 295 (336)
T 3lpz_A 288 IAEMYFGI 295 (336)
T ss_dssp HHHHHHCC
T ss_pred HHHHHcCC
Confidence 77777754
No 269
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.57 E-value=0.0079 Score=58.56 Aligned_cols=260 Identities=17% Similarity=0.090 Sum_probs=151.6
Q ss_pred hHHHHHHHhhcccchHHHHHHHhhccCChHHHHHHHHHHHHHchhhHHHHHHhhCCC---CCCchhchhHHHHHHHHHHh
Q 048034 92 DFYLLAKSYFDCREYRRAAHVLRDQTGKKSVFLRCYALYLAGEKRKEEEMIELEGPL---GKSDAVNRELISLERELSTL 168 (558)
Q Consensus 92 ~~~~la~~~~~~~~~~rA~~~l~~~~~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~---~~~~~~~~~l~~~~~~l~~~ 168 (558)
-...||+++.+.+.-..|+..+-++..+... ... .-.+...+..++.+..+... .+.+....+|--....+.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y-~eV--i~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKADDPSSY-MEV--VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCCSCCCSS-SHH--HHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHccCchHHHHHHHHhCCChHHH-HHH--HHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence 4557899999999988888877776543321 111 11122233334333322111 11222333333222222221
Q ss_pred hh-----CCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHHHHHHhhhcCHHHhhcCCCCchHHHHHHHHH
Q 048034 169 RK-----NGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLELQSLCTTIDILNSINLNNHWMKDFFLAS 243 (558)
Q Consensus 169 ~~-----~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 243 (558)
.. .+| +..-.-..|.-++..|.|+.|.-+|..+-+ |..| +.
T Consensus 133 ~elEefl~~~-N~A~iq~VGDrcf~e~lYeAAKilys~isN--------~akL-------------------------As 178 (624)
T 3lvg_A 133 AELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRL-------------------------AS 178 (624)
T ss_dssp STTTSTTSCC-SSSCTHHHHHHHHHSCCSTTSSTTGGGSCC--------CTTT-------------------------SS
T ss_pred HHHHHHHcCC-CcccHHHHHHHHHHccCHHHHHHHHHhCcc--------HHHH-------------------------HH
Confidence 11 122 222345667888888888888777765422 1122 67
Q ss_pred HHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHH
Q 048034 244 TYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALS 323 (558)
Q Consensus 244 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~ 323 (558)
++..+|+|..|++.-+++ +++.+|-....++...++|.-|..+--.++- .|+..+ .+...|...|-+++..
T Consensus 179 tLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~---elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 179 TLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELE---ELINYYQDRGYFEELI 249 (624)
T ss_dssp SSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCS---GGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHH---HHHHHHHhCCCHHHHH
Confidence 778888888888776654 5666788888888888888888777666553 344333 2233445567777778
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHc-cC-cCCHHHHHHhchhccccchHHHHHhHHHHHHcCC
Q 048034 324 YLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALK-LN-KNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHM 401 (558)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~ 401 (558)
.+++..+....-....+..||.+|.+- +.++-.++++.-.. ++ |+-..+ -.....|..+..+|..-.+
T Consensus 250 sLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvira---------cE~ahLW~ElvfLY~~ydE 319 (624)
T 3lvg_A 250 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA---------AEQAHLWAELVFLYDKYEE 319 (624)
T ss_dssp TTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHH---------HTTTTCHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHH---------HHHHhhHHHHHHHHhcchh
Confidence 888887777777777777787777654 44555555443221 11 222222 2244578888999998899
Q ss_pred HHHHHH
Q 048034 402 PFYALH 407 (558)
Q Consensus 402 ~~~A~~ 407 (558)
|+.|..
T Consensus 320 ~DnA~l 325 (624)
T 3lvg_A 320 YDNAII 325 (624)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 270
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.84 E-value=24 Score=27.95 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 435 LHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
+|+-++-.+.+...+...+-++..+..+|.+|.+.|+..+|-+.+.++.+
T Consensus 104 ~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 104 QGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp TTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45555555555554444444555666666666666666666666655554
No 271
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.30 E-value=60 Score=31.08 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=65.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 048034 429 CYETEQLHMLEEAIKCYRRAANCN-----------------DSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEER 491 (558)
Q Consensus 429 ~~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 491 (558)
+... ..+.++|.+.+++..... .....+...++..|...|+.++|..+++++-..+.....
T Consensus 85 ~~~~--~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 85 SLKD--SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHH--TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHhh--cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 4444 677778887777653221 112346677889999999999999999999887765544
Q ss_pred cCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 492 EGPN-MVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 492 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
..+. ....+...+..+...+++..+...+-..+.
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4443 344445568888889999888777666653
No 272
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=66.21 E-value=29 Score=25.01 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcC
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREG 493 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 493 (558)
.+...+..+.+.|+|++|+++.+++...+.......
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmklt 52 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT 52 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667777778888888888888777665554443
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.16 E-value=85 Score=29.18 Aligned_cols=149 Identities=11% Similarity=-0.047 Sum_probs=76.5
Q ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHH
Q 048034 266 GFSNYLQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGN 345 (558)
Q Consensus 266 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~ 345 (558)
-.++.++..+|..+++.+++.+|..+|- +-. + +....++.+++. -.....|.....+...+.
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~---~-~s~~~~a~mL~e------------w~~~~~~~e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LGT---K-ESPEVLARMEYE------------WYKQDESHTAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSC---T-THHHHHHHHHHH------------HHHTSCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hcC---C-chHHHHHHHHHH------------HHHhcCCccHHHHHHHHH
Confidence 3678999999999999999999998883 211 1 111233333221 111222344455554444
Q ss_pred -HHhhcCChHHHHHHHHHHHcc----CcCCHH--HHHHhchhc-cccchH-HHHHhHHHHHHcCC---HHHHHHHHHHHH
Q 048034 346 -YYSLKGQHEKSVVYFRRALKL----NKNYLS--AWTLMGHEY-KSIDYR-AWYGLGQAYEMMHM---PFYALHYFRKSV 413 (558)
Q Consensus 346 -~~~~~~~~~~A~~~~~~al~~----~p~~~~--~~~~~~~~~-~~~~~~-~~~~lg~~~~~~~~---~~~A~~~~~~a~ 413 (558)
.|...++...|...|....+. +|.-.. .-..-..+. .|..+. -+..+-..-...+. |..-...|+..+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l 274 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANL 274 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 467888999888866554431 221000 000000000 011111 01122223334443 333445556666
Q ss_pred hcCC-CCHHHHHHHHHHHHH
Q 048034 414 FLQP-NDSRLWIAMAQCYET 432 (558)
Q Consensus 414 ~~~p-~~~~~~~~la~~~~~ 432 (558)
+.+| .....+..+|..|+.
T Consensus 275 ~rd~~~~~~~L~~IG~~YFg 294 (336)
T 3lpz_A 275 NELNGIWDTALELIAEMYFG 294 (336)
T ss_dssp HTTTTTTHHHHHHHHHHHHC
T ss_pred HhcHHHHHHHHHHHHHHHcC
Confidence 6676 667788888888886
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.39 E-value=73 Score=34.75 Aligned_cols=112 Identities=6% Similarity=-0.101 Sum_probs=70.8
Q ss_pred HHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCCC--cchHHHHHHHHHhcCCH
Q 048034 243 STYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSLREFEQVEVVFEELLRN-DPYR--VEDMDMYSNVLYAKECF 319 (558)
Q Consensus 243 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~--~~~~~~~~~~l~~~~~~ 319 (558)
..+...|.++- ...++...|.++...+.+|.++...|++++|..+|+++-.- .... .......+.++-
T Consensus 818 ~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~----- 888 (950)
T 4gq2_M 818 EKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE----- 888 (950)
T ss_dssp HHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH-----
T ss_pred HHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC-----
Confidence 33444555443 33456677888888899999999999999999999987531 1111 111111111110
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC-cCCHH
Q 048034 320 SALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN-KNYLS 372 (558)
Q Consensus 320 ~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 372 (558)
..+........|..+..++...+-++-++.+.+.|+... +++..
T Consensus 889 ---------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 889 ---------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp ---------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ---------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 011111223477889999999999999999999999754 44443
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.91 E-value=37 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=22.4
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 048034 492 EGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYT 527 (558)
Q Consensus 492 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 527 (558)
.....+..|...|.++...|++.+|.+.|+..++..
T Consensus 91 IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 91 IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344455555666666666666666666666666644
No 276
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.72 E-value=29 Score=23.94 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHH
Q 048034 236 MKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYL 271 (558)
Q Consensus 236 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 271 (558)
+....+|..+...|++++|...|-+++...|.-..+
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 333445777777777777777777777766655443
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.30 E-value=32 Score=27.78 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
..+|...+... .++...|.-.... +.....+..|...|..+...|++.+|.+.|+..++.+.
T Consensus 71 LklWl~ya~~~------~dp~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 71 ISYCLKFAEYN------SDLHQFFEFLYNH-----GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHTTB------SCHHHHHHHHHTT-----TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33555555432 3366666665542 24456677777788888888888888888888887653
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=56.35 E-value=73 Score=25.25 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCChHHHHHHHHHHHccC
Q 048034 303 VEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLN 367 (558)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 367 (558)
.+..+.--.++...|+.+++..+....+..++-+|+....+|.+|...|+..+|.+.+.+|-+..
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34445555667788899999999998878888889999999999999999999999999997754
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.12 E-value=65 Score=27.85 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=53.9
Q ss_pred hHHHHHHHhhcc--CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCCchHHHHHHH
Q 048034 106 YRRAAHVLRDQT--GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTMDPFILYLYG 183 (558)
Q Consensus 106 ~~rA~~~l~~~~--~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g 183 (558)
.+||+..|.+.. .+...||+++..|...-. +-..+...|.. ...+..-+..|-..|
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~~---------------------~p~~if~~L~~-~~IG~~~AlfYe~wA 157 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYID---------------------EPVELFSFLAH-HHIGQESSIFYEEYA 157 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCS---------------------CHHHHHHHHHH-TTCSTTBHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHccC---------------------CHHHHHHHHHH-CCcchhHHHHHHHHH
Confidence 556666666553 366788888777773211 11122222221 233556778888899
Q ss_pred HHHHhcCChHHHHHHHHHHhhhCCC
Q 048034 184 LVLKDKGSENLARTVLVESVNSYPW 208 (558)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~ 208 (558)
..+...|++.+|..+|...++..-.
T Consensus 158 ~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 158 NYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999986543
No 280
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=55.59 E-value=53 Score=26.77 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=47.3
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHH-HHHHHHHhhcC
Q 048034 273 AQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESC-CIIGNYYSLKG 351 (558)
Q Consensus 273 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~-~~lg~~~~~~~ 351 (558)
+..+..+++.|+|-+|-+.++.+....+...+....+ + ..+. ...|......|
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~l-----------------q---------GLIQ~lAvAl~H~~rg 89 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFL-----------------H---------GMVQVAAGAYKHFDFE 89 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHH-----------------H---------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHH-----------------H---------HHHHHHHHHHHHHHhC
Confidence 4567778888999999999999987665431111110 0 2344 45677778889
Q ss_pred ChHHHHHHHHHHHcc
Q 048034 352 QHEKSVVYFRRALKL 366 (558)
Q Consensus 352 ~~~~A~~~~~~al~~ 366 (558)
+...|...+.+++..
T Consensus 90 N~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 90 DDDGMRSLFRTSLQY 104 (161)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998774
No 281
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=54.12 E-value=51 Score=24.07 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHH
Q 048034 235 WMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYL 271 (558)
Q Consensus 235 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 271 (558)
++....+|..+...|+++.|+.+|-+++...|....+
T Consensus 20 Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 20 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 4444557888889999999999888888887754443
No 282
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.21 E-value=1.4e+02 Score=27.49 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHhhcccchHHHHHHHhhccC------ChHHHHHHHHHHHHHchhhHHHHHHhhCCCCC----------CchhchhH
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTG------KKSVFLRCYALYLAGEKRKEEEMIELEGPLGK----------SDAVNREL 158 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~------~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~----------~~~~~~~l 158 (558)
-++--+...|.|+-|..+|++..+ -+..|+..|..-...-.........+...+.+ .+... .+
T Consensus 33 ~laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~-~l 111 (325)
T 3mv2_A 33 KLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVP-GL 111 (325)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCC-CH
T ss_pred CcHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCC-CH
Confidence 357778899999999999998733 56778877532111101000000000000000 01111 33
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCC
Q 048034 159 ISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYP 207 (558)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 207 (558)
..+...| ..|.-+...|++++|+..|+.++..-|
T Consensus 112 ~~L~~~L---------------k~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 112 DVVNEKM---------------NEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHH---------------HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 3333333 347888999999999999999987543
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.90 E-value=86 Score=26.62 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=44.5
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSV--FLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCND 453 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~--~~~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~~~ 453 (558)
+.|...+..+ ..++..++...|.-.. .+.-..+..|...|..+.. .|++.+|...|+..++..-
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~--~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN--AQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCC
Confidence 4555555543 2333556777766654 3556677888888888888 8999999998888888653
No 284
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=51.79 E-value=1.5e+02 Score=27.33 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHHh
Q 048034 504 ATHCRAHNRFEDAEVYCTRLLDYTGPE--KETAKSMLRGMRMA 544 (558)
Q Consensus 504 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ll~~~~~~ 544 (558)
-...++.++|..|....++.+++.|.. .+.++.++..+.+.
T Consensus 214 M~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 214 MSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 345688999999999999999997633 34456677766643
No 285
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=51.05 E-value=42 Score=23.14 Aligned_cols=32 Identities=6% Similarity=-0.028 Sum_probs=20.3
Q ss_pred HHhHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 048034 390 YGLGQAYEMMHMPFYALHYFRKSVFLQPNDSR 421 (558)
Q Consensus 390 ~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 421 (558)
..+|..+...|++++|..+|-+|+...|+-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34666666666666666666666666665443
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.15 E-value=75 Score=25.88 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhcCCC--h------HHH-HHHHHHHHHcccHHHHHHHHHHHHH
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTFGFS--N------YLQ-AQIAKAQYSLREFEQVEVVFEELLR 297 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~------~~~-~~~a~~~~~~~~~~~A~~~~~~~l~ 297 (558)
+..+..++..|+|=+|-+.++.+-...+.. . .+. ...|..+...|+...|..++.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445888899999999999999998866544 1 233 4455566778999999999999987
No 287
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=50.03 E-value=1.3e+02 Score=28.12 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 454 SEAIALNQLAKLHHALGR--DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 454 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
..|.++-+||.+-...-. ...++..|.+++........ .....-|..+|-++.+.+++.+|+.++-.+-.
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~--n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYS--DHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHST--TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhc--cCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 456677777776654322 23388888888875544332 34456677899999999999999999987753
No 288
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.83 E-value=36 Score=33.37 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--hhhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCc
Q 048034 459 LNQLAKLHHALGRDEEAAFYYKKDLERMEA--EEREG--PNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY-TGPE 530 (558)
Q Consensus 459 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 530 (558)
...+-.+|.+.|+..-+...++..-.. .. ..... ......++.+|+++...++|.+|.+++..|+.. .|.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345668899999999888888654331 10 00011 234567788999999999999999999999987 5544
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.49 E-value=1e+02 Score=24.82 Aligned_cols=82 Identities=12% Similarity=0.078 Sum_probs=55.2
Q ss_pred hHHHHHHHhhcc--CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCCchHHHHHHH
Q 048034 106 YRRAAHVLRDQT--GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTMDPFILYLYG 183 (558)
Q Consensus 106 ~~rA~~~l~~~~--~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g 183 (558)
.+||+..+.+.. .+...||+++..|...-.. . ..+...|. ....+..-+..|-..|
T Consensus 51 LErc~~~f~~~~~YknD~RyLklWl~ya~~~~d-p--------------------~~if~~L~-~~~IG~~~AlfYe~wA 108 (152)
T 4a1g_A 51 LEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD-L--------------------HQFFEFLY-NHGIGTLSSPLYIAWA 108 (152)
T ss_dssp HHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC-H--------------------HHHHHHHH-TTTTTTTBHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHhcCC-H--------------------HHHHHHHH-HCCCcHHHHHHHHHHH
Confidence 566777666553 3677888888787743221 1 12222221 1233556778888899
Q ss_pred HHHHhcCChHHHHHHHHHHhhhCCCC
Q 048034 184 LVLKDKGSENLARTVLVESVNSYPWN 209 (558)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (558)
..+...|++.+|..+|...++....-
T Consensus 109 ~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 109 GHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999865443
No 290
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=48.27 E-value=49 Score=24.10 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=41.6
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHhcCCHhHHHHHHHHHhhcCCCChhHHHHHHHHHhhcCCh
Q 048034 274 QIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQH 353 (558)
Q Consensus 274 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~~a~~l~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 353 (558)
..|..+++.|+|-+|-+.++.+....|.. +-.... .-+....|.+....|+.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~-~~~~~q---------------------------GLIq~Ava~~h~~~gn~ 57 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGE-ERRLLQ---------------------------GVILLAAALHQRRLGRP 57 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHH-HHHHHH---------------------------HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCc-hHHHHH---------------------------HHHHHHHHHHHHHcCcH
Confidence 45677788899999999998888776432 111110 23344566667678887
Q ss_pred HHHHHHHHHHHc
Q 048034 354 EKSVVYFRRALK 365 (558)
Q Consensus 354 ~~A~~~~~~al~ 365 (558)
|...+.+++.
T Consensus 58 --a~~ll~~a~~ 67 (94)
T 2cwy_A 58 --GLRNLRKAEA 67 (94)
T ss_dssp --CHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 8888888876
No 291
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=47.00 E-value=33 Score=24.71 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048034 421 RLWIAMAQCYETEQLHMLEEAIKCYRRAA 449 (558)
Q Consensus 421 ~~~~~la~~~~~~~~~~~~~A~~~~~~al 449 (558)
..+...+..+.. .|+|++||++.+++.
T Consensus 16 H~~~RrAe~ll~--~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLA--AGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHh--cCCHHHHHHHHHHHH
Confidence 345567777888 899999988888765
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.85 E-value=1.2e+02 Score=24.81 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=55.1
Q ss_pred hHHHHHHHhhcc--CChHHHHHHHHHHHHHchhhHHHHHHhhCCCCCCchhchhHHHHHHHHHHhhhCCCCchHHHHHHH
Q 048034 106 YRRAAHVLRDQT--GKKSVFLRCYALYLAGEKRKEEEMIELEGPLGKSDAVNRELISLERELSTLRKNGTMDPFILYLYG 183 (558)
Q Consensus 106 ~~rA~~~l~~~~--~~~~~~l~~y~~yl~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~g 183 (558)
.+||+..|.+.. .+...||+++..|...-... . .+...|. ....+..-+..|-..|
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p-~--------------------~if~~L~-~~~IG~~~AlfY~~wA 103 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEP-L--------------------DMYSYLH-NQGIGVSLAQFYISWA 103 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCH-H--------------------HHHHHHH-HTTSSTTBHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCH-H--------------------HHHHHHH-HCCcchhhHHHHHHHH
Confidence 566666666543 36778888887777442111 1 1222221 1233566778888899
Q ss_pred HHHHhcCChHHHHHHHHHHhhhCCCC
Q 048034 184 LVLKDKGSENLARTVLVESVNSYPWN 209 (558)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~al~~~p~~ 209 (558)
..+...|++.+|..+|...++....-
T Consensus 104 ~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 104 EEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999866443
No 293
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.57 E-value=28 Score=24.34 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 048034 499 ALIFLATHCRAHNRFEDAEVYCTRLLD 525 (558)
Q Consensus 499 ~~~~la~~~~~~g~~~~A~~~~~~al~ 525 (558)
-...+|+=|...|+|+.|+.+|+.+++
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 345689999999999999999998875
No 294
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=44.50 E-value=1.6e+02 Score=28.07 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc------
Q 048034 454 SEAIALNQLAKLHHALGRD--EEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD------ 525 (558)
Q Consensus 454 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------ 525 (558)
..|.++-+||.+-...--. ..++.+|.+++....... ......-|..+|-++++.+++.+|+.++-.+-.
T Consensus 275 rYPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y--~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YN 352 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYY--RDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYN 352 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHS--TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred hCchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHh--ccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcC
Confidence 4566666666665543222 247788888887544332 234456677899999999999999999987753
Q ss_pred cCCCcHHHHHHHHH
Q 048034 526 YTGPEKETAKSMLR 539 (558)
Q Consensus 526 ~~~~~~~~~~~ll~ 539 (558)
...+|.+..++++.
T Consensus 353 Y~reDeEIYKEf~e 366 (550)
T 3u84_A 353 YCREDEEIYKEFFE 366 (550)
T ss_dssp CCGGGHHHHHHHHH
T ss_pred CCcchHHHHHHHHH
Confidence 22234455555544
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=44.46 E-value=36 Score=29.09 Aligned_cols=38 Identities=11% Similarity=-0.116 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHhhhCCCCHHHH
Q 048034 176 PFILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSW 213 (558)
Q Consensus 176 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 213 (558)
....|.+|.++...++|.+|.+.+..|+...|......
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~ 51 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKN 51 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHH
Confidence 34689999999999999999999999999999765443
No 296
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=43.10 E-value=59 Score=23.01 Aligned_cols=28 Identities=32% Similarity=0.262 Sum_probs=20.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 462 LAKLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 462 la~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
.|.-.-+.|++++|+.+|..+++.+...
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3344467889999999988888865543
No 297
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=41.78 E-value=2.1e+02 Score=26.27 Aligned_cols=94 Identities=23% Similarity=0.200 Sum_probs=56.4
Q ss_pred HHHHHhhcccchHHHHHHHhhccC------ChHHHHHHHHH---HHHHchhhHHHHHHhhCCCC----------CCchhc
Q 048034 95 LLAKSYFDCREYRRAAHVLRDQTG------KKSVFLRCYAL---YLAGEKRKEEEMIELEGPLG----------KSDAVN 155 (558)
Q Consensus 95 ~la~~~~~~~~~~rA~~~l~~~~~------~~~~~l~~y~~---yl~~~~~~~e~~~~~~~~~~----------~~~~~~ 155 (558)
-++--|...|.|+.|..+|++..+ -+..|+..|.. |+.+-.. ...+...+. ..+...
T Consensus 21 ~laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~----~p~l~~~~~r~~~~~~~~~~lP~i~ 96 (320)
T 3mkr_B 21 QLPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPC----LPSMYGYPNRNWKDAGLKNGVPAVG 96 (320)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTT----SCCEEECCBTTTTTCCSSSCCBCCC
T ss_pred CcHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhccCCCC----CCcchhhhcCCccccccccCCCCcc
Confidence 357778899999999999998743 56778776531 1111000 000000000 011122
Q ss_pred hhHHHHHHHHHHhhhCCCCchHHHHHHHHHHHhcCChHHHHHHHHHHhhhCC
Q 048034 156 RELISLERELSTLRKNGTMDPFILYLYGLVLKDKGSENLARTVLVESVNSYP 207 (558)
Q Consensus 156 ~~l~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 207 (558)
..+..+...| ..|.-+...|++++|+..|+.++..-|
T Consensus 97 ~~l~~l~~~L---------------k~gyk~~t~gKf~eAl~~Fr~iL~~i~ 133 (320)
T 3mkr_B 97 LKLNDLIQRL---------------QLCYQLTTVGKFEEAVEKFRSILLSVP 133 (320)
T ss_dssp CCHHHHHHHH---------------HHHHHHHHTTCHHHHHHHHHHHHHHGG
T ss_pred cCHHHHHHHH---------------HHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 2333333333 447888999999999999999988665
No 298
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.33 E-value=54 Score=27.94 Aligned_cols=34 Identities=15% Similarity=-0.085 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 048034 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDS 420 (558)
Q Consensus 387 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~ 420 (558)
...|.+|.++...++|.+|...+..|+...|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4678899999999999999999999999988764
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.31 E-value=1.9e+02 Score=24.99 Aligned_cols=62 Identities=10% Similarity=-0.043 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 048034 456 AIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTG 528 (558)
Q Consensus 456 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 528 (558)
..+|..++.. .+++..+|.-.... +.+...+..|...|.++...|++.+|.+.|+..++...
T Consensus 120 LklWl~Ya~~------~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 120 LRIWMQYVNY------IDEPVELFSFLAHH-----HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHHHHTT------CSCHHHHHHHHHHT-----TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc------cCCHHHHHHHHHHC-----CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3456555552 24566666666552 25566677788889999999999999999999987653
No 300
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.29 E-value=67 Score=22.70 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=18.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhh
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAE 489 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~ 489 (558)
.-.-+.|++++|+.+|..+++.+...
T Consensus 19 ve~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 19 VKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33457788888888888888865443
No 301
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.96 E-value=61 Score=31.73 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=49.8
Q ss_pred HHHhHHHHHHcCCHHHHHHHHHHHHhcCC--C--------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCc
Q 048034 389 WYGLGQAYEMMHMPFYALHYFRKSVFLQP--N--------DSRLWIAMAQCYETEQLHMLEEAIKCYRRAANC-NDSE 455 (558)
Q Consensus 389 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~p--~--------~~~~~~~la~~~~~~~~~~~~~A~~~~~~al~~-~~~~ 455 (558)
...+-.+|++.++...+...++..-...+ . -....+.+|..+.. .++|.+|..++..|+.. .|..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~--~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL--NSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH--HccHHHHHHHHHHHHHhcCCcc
Confidence 34566889999999998888865433221 1 24567889999999 99999999999999998 6654
No 302
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.33 E-value=40 Score=24.09 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 466 HHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 466 ~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
.-..|++++|+.+|..+++.+-...
T Consensus 26 ~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 26 LDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777766654443
No 303
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.76 E-value=1.2e+02 Score=21.85 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=21.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 048034 464 KLHHALGRDEEAAFYYKKDLERMEAEEREGPN 495 (558)
Q Consensus 464 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 495 (558)
.-.-..|++++|+.+|..+++.+-......++
T Consensus 23 ve~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~ 54 (93)
T 1wfd_A 23 VELDAESRYQQALVCYQEGIDMLLQVLKGTKE 54 (93)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 33456788999999988888876554433333
No 304
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.76 E-value=2.6e+02 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHHh
Q 048034 504 ATHCRAHNRFEDAEVYCTRLLDYTGPE--KETAKSMLRGMRMA 544 (558)
Q Consensus 504 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~ll~~~~~~ 544 (558)
-...++.++|..|....++.+++.|.. .+.++.++..+.+.
T Consensus 205 M~~a~K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 205 LNLFFKLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEKN 247 (320)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 345688999999999999999997532 23456777777654
No 305
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=35.54 E-value=1.1e+02 Score=21.31 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
-...+|+=|...|+|+.|+.+|+.+++.+.+..
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 345788888999999999999999998765544
No 306
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=34.84 E-value=3.1e+02 Score=26.22 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=51.8
Q ss_pred CcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhc------
Q 048034 454 SEAIALNQLAKLHHALGR--DEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLD------ 525 (558)
Q Consensus 454 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------ 525 (558)
..|.++.+||.+-...-. ...++..|++++...+.... .....-|..+|-.+.+.+++.+|+.++..+-.
T Consensus 260 ~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~--~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Yn 337 (489)
T 4gq4_A 260 RYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYR--DEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYN 337 (489)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHST--TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred hcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcc--cCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcc
Confidence 344555555555443221 23466788888875544332 33456777889999999999999999988753
Q ss_pred cCCCcHHHHHHHH
Q 048034 526 YTGPEKETAKSML 538 (558)
Q Consensus 526 ~~~~~~~~~~~ll 538 (558)
....|.+..+.++
T Consensus 338 Y~reDeEiYke~~ 350 (489)
T 4gq4_A 338 YCREDEEIYKEFF 350 (489)
T ss_dssp CCTTCHHHHHHHH
T ss_pred cccchHHHHHHHH
Confidence 3334445555443
No 307
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=32.82 E-value=1.3e+02 Score=21.33 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=12.0
Q ss_pred cCCHHHHHHHHHHHHh
Q 048034 435 LHMLEEAIKCYRRAAN 450 (558)
Q Consensus 435 ~~~~~~A~~~~~~al~ 450 (558)
.|++++|+.+|..+++
T Consensus 29 ~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 29 ESRYPQALVCYQEGID 44 (86)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777765
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.37 E-value=2e+02 Score=24.57 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhcCCChH--------HHHHHHHHHHHcccHHHHHHHHHHHHHcCCCCcchHHHHHHH
Q 048034 252 NEALTKYEYLQGTFGFSNY--------LQAQIAKAQYSLREFEQVEVVFEELLRNDPYRVEDMDMYSNV 312 (558)
Q Consensus 252 ~~A~~~~~~~~~~~p~~~~--------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 312 (558)
+.|+..++.+-...+-... +..+...++...|.|++|.+.+++.+..++.+......+..+
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566666666555443222 223445677889999999999999988766554444444333
No 309
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.15 E-value=63 Score=22.89 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVN 204 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (558)
-+...|.-.-+.|++++|+.+|.++++
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455667778899999999999999877
No 310
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.55 E-value=47 Score=24.24 Aligned_cols=33 Identities=6% Similarity=-0.033 Sum_probs=27.3
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHcCCCCcch
Q 048034 273 AQIAKAQYSLREFEQVEVVFEELLRNDPYRVED 305 (558)
Q Consensus 273 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 305 (558)
..+|..+...|+++.|+.+|-+++...|.-.+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 357889999999999999999999988765443
No 311
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=29.07 E-value=2.2e+02 Score=26.63 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=30.6
Q ss_pred chHHHHHhHHHHHHcCCHH--HHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPF--YALHYFRKSVFL-----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~--~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
-+.+.-+||.+-...-.+. .++..|.+|+.. ......-+..+|..+.+ .+++.+|+.++-.+
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR--~~~~reAl~~WA~A 322 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYR--KKKYYEAIASWVDA 322 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhh--cchHHHHHHHHHHH
Confidence 3444445554443322221 255556655543 22334445555656666 66666666655544
No 312
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=27.25 E-value=3.1e+02 Score=23.84 Aligned_cols=167 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhhcCCChHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcCCCCcchHHHHHHHHHh
Q 048034 238 DFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSL--REFEQVEVVFEELLRNDPYRVEDMDMYSNVLYA 315 (558)
Q Consensus 238 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~ 315 (558)
..+++.+..+.++|++.+....++.+..+.-..--..+-.+.++. |....+...+..+-+...........-..--++
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~yr 87 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 87 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Q ss_pred cCCHhHHHHHHHHHhh-----------cCCCChhHHHHHHHHHhhcCCh----------HHHHHHHHHHHccC----cCC
Q 048034 316 KECFSALSYLAHRVFT-----------TDKYRPESCCIIGNYYSLKGQH----------EKSVVYFRRALKLN----KNY 370 (558)
Q Consensus 316 ~~~~~~a~~l~~~~~~-----------~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~----p~~ 370 (558)
..-..+...+...++. ........+-..|.+|...-.+ +.|...|+.|+.+. |..
T Consensus 88 ~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pt 167 (234)
T 2br9_A 88 QMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPT 167 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCC
Q ss_pred HHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHHh
Q 048034 371 LSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVF 414 (558)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 414 (558)
.+....++ +..-...|..++++++|....++|+.
T Consensus 168 hPirLgLa----------LN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 168 HPIRLGLA----------LNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp CHHHHHHH----------HHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHH
No 313
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.96 E-value=84 Score=22.17 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 048034 178 ILYLYGLVLKDKGSENLARTVLVESVN 204 (558)
Q Consensus 178 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 204 (558)
-+...|.-.-+.|++++|+.+|..+++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 355667778889999999999999877
No 314
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.81 E-value=5.8e+02 Score=26.21 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=21.4
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCc
Q 048034 499 ALIFLATHC--RAHNRFEDAEVYCTRLLDYTGPE 530 (558)
Q Consensus 499 ~~~~la~~~--~~~g~~~~A~~~~~~al~~~~~~ 530 (558)
.+..+..++ ...|+++.|++.+++. .+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~L-~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMELL-DLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT-SCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCC
Confidence 344455554 8899999999999984 454554
No 315
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.21 E-value=1.1e+02 Score=26.22 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHhc
Q 048034 504 ATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSMLRGMRMAQ 545 (558)
Q Consensus 504 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ll~~~~~~~ 545 (558)
..++.+.|.|++|.+.+++.+.-++.....-..++..++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 446788999999999999999975444445566666666543
No 316
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=22.14 E-value=4.1e+02 Score=23.49 Aligned_cols=162 Identities=12% Similarity=0.061 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHhhc--CC-ChHHHHHHHHHHHH-cccHHHHHHHHHHHHHcCC--CCcchHHHHHHH
Q 048034 239 FFLASTYQELRMHNEALTKYEYLQGTF--GF-SNYLQAQIAKAQYS-LREFEQVEVVFEELLRNDP--YRVEDMDMYSNV 312 (558)
Q Consensus 239 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~ 312 (558)
.+++.+..+.++|++.+....++.+.. +. +..=...+..+|-+ .|....+...+..+-+... .+ +....+..-
T Consensus 12 v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~-~~~~~~i~~ 90 (260)
T 1o9d_A 12 VYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN-EEHVNSIRE 90 (260)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc-HHHHHHHHH
Confidence 456888889999999999999999866 43 33434444444432 3444555555544433211 11 111111111
Q ss_pred HHhcCCHhHH-------HHHHHHHhhcCCCCh----hHHHHHHHHHhhcCC----------hHHHHHHHHHHHc-----c
Q 048034 313 LYAKECFSAL-------SYLAHRVFTTDKYRP----ESCCIIGNYYSLKGQ----------HEKSVVYFRRALK-----L 366 (558)
Q Consensus 313 l~~~~~~~~a-------~~l~~~~~~~~~~~~----~~~~~lg~~~~~~~~----------~~~A~~~~~~al~-----~ 366 (558)
++..-..+. ..++...+-....++ ..+-..|.+|...-. .+.|...|+.|+. +
T Consensus 91 -yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L 169 (260)
T 1o9d_A 91 -YRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTEL 169 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111112222 223333221112222 223355666653322 2568888888875 4
Q ss_pred CcCCHHHHHHhchhccccchHHHHHhHHHHHHcCCHHHHHHHHHHHH
Q 048034 367 NKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSV 413 (558)
Q Consensus 367 ~p~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 413 (558)
.|.++-- +| -+++.-...|..++++++|....++|+
T Consensus 170 ~pthPir---LG--------LaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 170 APTHPIR---LG--------LALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp CTTCHHH---HH--------HHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CCCCcHH---HH--------HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4555431 11 112222234456788888888777765
No 317
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=21.61 E-value=2.2e+02 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 048034 458 ALNQLAKLHHALGRDEEAAFYYKKDLE 484 (558)
Q Consensus 458 ~~~~la~~~~~~g~~~~A~~~~~~al~ 484 (558)
....-|.-+.+.+++.+|...|+++..
T Consensus 55 ~~i~eak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 55 SLIAEGKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 444555666677777777777777765
No 318
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=20.99 E-value=1.8e+02 Score=28.46 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 048034 493 GPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDY 526 (558)
Q Consensus 493 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 526 (558)
......++..+|++|+..|++++|..+.++++..
T Consensus 187 r~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 187 KPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3556778889999999999999999999999864
No 319
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=20.76 E-value=5.6e+02 Score=24.53 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=29.6
Q ss_pred chHHHHHhHHHHHHcCCHH--HHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048034 385 DYRAWYGLGQAYEMMHMPF--YALHYFRKSVFL-----QPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 448 (558)
Q Consensus 385 ~~~~~~~lg~~~~~~~~~~--~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~~~~~~~~A~~~~~~a 448 (558)
.+.+.-+||.+-...--+. .++..|.+|+.. ......-|..+|..+++ .+++.+|+..+-.+
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR--~~~~reAl~~WA~A 344 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCR--NRNVREALQAWADT 344 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhh--cchHHHHHHHHHHH
Confidence 3444445554443322211 355555555542 22334445555555555 66666665555443
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.58 E-value=2.3e+02 Score=19.87 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=19.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhh
Q 048034 465 LHHALGRDEEAAFYYKKDLERMEAEE 490 (558)
Q Consensus 465 ~~~~~g~~~~A~~~~~~al~~~~~~~ 490 (558)
-.-..|++++|+.+|..+++.+-...
T Consensus 22 ~~D~~g~y~eAl~~Y~~aie~l~~a~ 47 (85)
T 2v6x_A 22 DLDTATQYEEAYTAYYNGLDYLMLAL 47 (85)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999988888655443
Done!