BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048036
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 150/496 (30%), Positives = 216/496 (43%), Gaps = 145/496 (29%)
Query: 29 IDLPDTDPRVQRTVEGFE-PEQISVSLSSTHD-SVWISWITGEFQIGNNIKPLDPKIIAS 86
+D+P D V G+ P+Q+ ++ V ISW T P D K A+
Sbjct: 7 VDMP-WDSDVFAVPSGYNAPQQVHITQGDYEGRGVIISWTT----------PYD-KAGAN 54
Query: 87 VVRYATRRSQLNRKATGHSLVYNQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYYYQCGDP 146
V Y + S+ ++A G + Y NYTS IHH + L+ DT YYY+ G
Sbjct: 55 KVFYWSENSKSQKRAMGTVVTYKYY-------NYTSAFIHHCTIKDLEYDTKYYYRLG-- 105
Query: 147 SIPAMSGTYYFRTMPDSSPTSYPSKIAIVGDQGLTYNTTSTVNHMISN--RPDLILLVGD 204
++F T P P P ++GD G T+++ +T+ H N + +L +GD
Sbjct: 106 -FGDAKRQFWFVTPPKPGP-DVPYVFGLIGDIGQTHDSNTTLTHYEQNSAKGQAVLFMGD 163
Query: 205 VTYSNLYLTNGTGSNCYSCSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHELD 264
++YSN + P H+ RWD WGR+ + ++ P + GNHE+D
Sbjct: 164 LSYSNRW-----------------PNHD--NNRWDTWGRFSERSVAYQPWIWTAGNHEID 204
Query: 265 F--DIYIYI-----------------TGD---------------------------QYKW 278
+ DI Y +GD QYKW
Sbjct: 205 YAPDIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKW 264
Query: 279 LEEDLVNVDREVTPWLVVTWHAPWYNTYKAHYREAECMRVV----AMEDGVDVVFNGHVH 334
+L V+R TPWL+V HAP YN+Y+AHY E E MR + + VD+VF+GHVH
Sbjct: 265 FTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVH 324
Query: 335 AYERSNRVYNYTL-----------DPCGPIHITVGDGGNREKMAVPYADELGNCPEPSTT 383
+YERS RV N D P++IT+GDGGN E +A +P
Sbjct: 325 SYERSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLA-------SEMTQP--- 374
Query: 384 LDKILGGGKFCGFNFTLGPATGKFCWDRQPDYSAFRESTFGHGILEVKNETHALWTWHRN 443
QP YSAFRE++FGHGI ++KN THA ++WHRN
Sbjct: 375 ----------------------------QPSYSAFREASFGHGIFDIKNRTHAHFSWHRN 406
Query: 444 QDFYGAVGDQIYIVRQ 459
QD D ++++ +
Sbjct: 407 QDGASVEADSLWLLNR 422
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 176 bits (446), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 216/502 (43%), Gaps = 147/502 (29%)
Query: 30 DLPDTDPRVQRTVEGFE-PEQISVSLSS-THDSVWISWITGEFQIGNNIKPLDPKIIASV 87
D+P D V R G+ P+Q+ ++ ++ ISW+T + +P +S
Sbjct: 4 DMP-LDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMD----------EPG--SSA 50
Query: 88 VRYATRRSQLNRKATGHSLVYNQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYYYQCGDPS 147
VRY + ++ R A G Y NY+SG IHH + LK +T YYY+ G
Sbjct: 51 VRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG--- 100
Query: 148 IPAMSGTYYFRTMPDSSPTSYPSKIAIVGDQGLTYNTTSTVNH--MISNRPDLILLVGDV 205
+ + + F T P + P ++GD G ++++ +T++H + + +L VGD+
Sbjct: 101 LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDL 159
Query: 206 TYSNLYLTNGTGSNCYSCSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHELDF 265
+Y++ Y P H+ RWD WGR+ + ++ P + GNHE++F
Sbjct: 160 SYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEF 200
Query: 266 -------------------------------------DIYIYITGD---------QYKWL 279
+I + QY WL
Sbjct: 201 APEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWL 260
Query: 280 EEDLVNVDREVTPWLVVTWHAPWYNTYKAHYREAECMRVV----AMEDGVDVVFNGHVHA 335
+++L V R TPWL+V H+P YN+Y H+ E E MR ++ VDVVF GHVHA
Sbjct: 261 KKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHA 320
Query: 336 YERSNRVYNYTL-----------DPCGPIHITVGDGGNREKMAVPYADELGNCPEPSTTL 384
YERS RV N D P++IT+GD GN Y N +P
Sbjct: 321 YERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGN-------YGVIDSNMIQP---- 369
Query: 385 DKILGGGKFCGFNFTLGPATGKFCWDRQPDYSAFRESTFGHGILEVKNETHALWTWHRNQ 444
QP+YSAFRE++FGHG+ ++KN THA ++W+RNQ
Sbjct: 370 ---------------------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQ 402
Query: 445 DFYGAVGDQIYIVRQPDWCPVE 466
D D ++ + W PV+
Sbjct: 403 DGVAVEADSVWFFNR-HWYPVD 423
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 216/502 (43%), Gaps = 147/502 (29%)
Query: 30 DLPDTDPRVQRTVEGFE-PEQISVSLSS-THDSVWISWITGEFQIGNNIKPLDPKIIASV 87
D+P D V R G+ P+Q+ ++ ++ ISW+T + +P +S
Sbjct: 10 DMP-LDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMD----------EPG--SSA 56
Query: 88 VRYATRRSQLNRKATGHSLVYNQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYYYQCGDPS 147
VRY + ++ R A G Y NY+SG IHH + LK +T YYY+ G
Sbjct: 57 VRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG--- 106
Query: 148 IPAMSGTYYFRTMPDSSPTSYPSKIAIVGDQGLTYNTTSTVNH--MISNRPDLILLVGDV 205
+ + + F T P + P ++GD G ++++ +T++H + + +L VGD+
Sbjct: 107 LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDL 165
Query: 206 TYSNLYLTNGTGSNCYSCSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHELDF 265
+Y++ Y P H+ RWD WGR+ + ++ P + GNHE++F
Sbjct: 166 SYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEF 206
Query: 266 -------------------------------------DIYIYITGD---------QYKWL 279
+I + QY WL
Sbjct: 207 APEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWL 266
Query: 280 EEDLVNVDREVTPWLVVTWHAPWYNTYKAHYREAECMRVV----AMEDGVDVVFNGHVHA 335
+++L V R TPWL+V H+P YN+Y H+ E E MR ++ VDVVF GHVHA
Sbjct: 267 KKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHA 326
Query: 336 YERSNRVYNYTL-----------DPCGPIHITVGDGGNREKMAVPYADELGNCPEPSTTL 384
YERS RV N D P++IT+GD GN Y N +P
Sbjct: 327 YERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGN-------YGVIDSNMIQP---- 375
Query: 385 DKILGGGKFCGFNFTLGPATGKFCWDRQPDYSAFRESTFGHGILEVKNETHALWTWHRNQ 444
QP+YSAFRE++FGHG+ ++KN THA ++W+RNQ
Sbjct: 376 ---------------------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQ 408
Query: 445 DFYGAVGDQIYIVRQPDWCPVE 466
D D ++ + W PV+
Sbjct: 409 DGVAVEADSVWFFNR-HWYPVD 429
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/502 (28%), Positives = 216/502 (43%), Gaps = 147/502 (29%)
Query: 30 DLPDTDPRVQRTVEGFE-PEQISVSLSS-THDSVWISWITGEFQIGNNIKPLDPKIIASV 87
D+P D V R G+ P+Q+ ++ ++ ISW+T + +P +S
Sbjct: 2 DMP-LDSDVFRVPPGYNAPQQVHITQGDLVGRAMIISWVTMD----------EPG--SSA 48
Query: 88 VRYATRRSQLNRKATGHSLVYNQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYYYQCGDPS 147
VRY + ++ R A G Y NY+SG IHH + LK +T YYY+ G
Sbjct: 49 VRYWSEKNGRKRIAKGKMSTYRFF-------NYSSGFIHHTTIRKLKYNTKYYYEVG--- 98
Query: 148 IPAMSGTYYFRTMPDSSPTSYPSKIAIVGDQGLTYNTTSTVNH--MISNRPDLILLVGDV 205
+ + + F T P + P ++GD G ++++ +T++H + + +L VGD+
Sbjct: 99 LRNTTRRFSFITPPQTG-LDVPYTFGLIGDLGQSFDSNTTLSHYELSPKKGQTVLFVGDL 157
Query: 206 TYSNLYLTNGTGSNCYSCSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHELDF 265
+Y++ Y P H+ RWD WGR+ + ++ P + GNHE++F
Sbjct: 158 SYADRY-----------------PNHDNV--RWDTWGRFTERSVAYQPWIWTAGNHEIEF 198
Query: 266 -------------------------------------DIYIYITGD---------QYKWL 279
+I + QY WL
Sbjct: 199 APEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWL 258
Query: 280 EEDLVNVDREVTPWLVVTWHAPWYNTYKAHYREAECMRVV----AMEDGVDVVFNGHVHA 335
+++L V R TPWL+V H+P YN+Y H+ E E MR ++ VDVVF GHVHA
Sbjct: 259 KKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHA 318
Query: 336 YERSNRVYNYTL-----------DPCGPIHITVGDGGNREKMAVPYADELGNCPEPSTTL 384
YERS RV N D P++IT+GD GN Y N +P
Sbjct: 319 YERSERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGN-------YGVIDSNMIQP---- 367
Query: 385 DKILGGGKFCGFNFTLGPATGKFCWDRQPDYSAFRESTFGHGILEVKNETHALWTWHRNQ 444
QP+YSAFRE++FGHG+ ++KN THA ++W+RNQ
Sbjct: 368 ---------------------------QPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQ 400
Query: 445 DFYGAVGDQIYIVRQPDWCPVE 466
D D ++ + W PV+
Sbjct: 401 DGVAVEADSVWFFNR-HWYPVD 421
>pdb|3P01|A Chain A, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
pdb|3P01|B Chain B, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
pdb|3P01|C Chain C, Crystal Structure Of Two-Component Response Regulator From
Nostoc Sp. Pcc 7120
Length = 184
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 8 TLDGPFKPVTIPLDKSFRGNAIDLPDTDPRVQRTVEGFEPEQISVSLSSTHDSVWISWI- 66
+L+ P+ +SF NA L + + T++GF +Q +V+ D + I
Sbjct: 44 SLEAILTPIATAFAESFAVNACILQXLEGQTLSTIQGFYSQQGTVNNWLNQDPLTNEAIA 103
Query: 67 TGEFQIGNNIKPLDPKIIASVVRY 90
TG+ Q+ NI DPK +AS+ +Y
Sbjct: 104 TGQIQVAANIAK-DPK-LASISQY 125
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 127 HVRLTGLKPDTLYYYQCGDPSIPAMSGTYYFRTMPDSSPTSYPSKIAIVGDQGLTYNTTS 186
HV GL+P+ +YYY+ + +S +T+P A Q + +
Sbjct: 76 HVEADGLEPNKVYYYRF--KTGHELSPVGKTKTLPAPGANVPQMTFAFASCQQYEHGYYT 133
Query: 187 TVNHMISNRPDLILLVGDVTYSNLYLTNGTGSNCYSCSFANSPIHETYQ--PRWDYWGRY 244
HM + DL+ +GD Y G N Y N H + + DY R+
Sbjct: 134 AYKHMAKEKLDLVFHLGDYIYE-------YGPNEYVSKTGNVRTHNSAEIITLQDYRNRH 186
Query: 245 MQ 246
Q
Sbjct: 187 AQ 188
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 129 RLTGLKPDTLYYYQCGDPS---IPAMSGTYYFRTMPDSSPTS 167
RL GLKP++LYY++ S + A + RTM S P+S
Sbjct: 73 RLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPSS 114
>pdb|2ENJ|A Chain A, Solution Sturcture Of The C2 Domain From Human Protein
Kinase C Theta
Length = 138
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 297 TWHAPWYNTYKAHYREAECMRVVAMEDGVDVVFNGHVHAYERSNRV 342
T + PW +T+ AH + M+++ VD++ V Y + R
Sbjct: 58 TMYPPWDSTFDAHINKGRVMQIIVKGKNVDLISETTVELYSLAERC 103
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 284 VNVDREVTPWLVVTWHAPWY-NTY---KAHYREAECMRVVAMEDG 324
VN+ R PW V W PW N+Y K E E +R V MEDG
Sbjct: 279 VNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLR-VKMEDG 322
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 284 VNVDREVTPWLVVTWHAPW----YNTYKAHYREAECMRVVAMEDG 324
VN+ R PW V W PW Y K E E +R V MEDG
Sbjct: 264 VNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLR-VKMEDG 307
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 284 VNVDREVTPWLVVTWHAPW----YNTYKAHYREAECMRVVAMEDG 324
VN+ R PW V W PW Y K E E +R V MEDG
Sbjct: 264 VNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLR-VKMEDG 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,564,938
Number of Sequences: 62578
Number of extensions: 773249
Number of successful extensions: 1469
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 23
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)