BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048039
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 121/198 (61%), Gaps = 4/198 (2%)
Query: 9 ADSNNILDFCVADIYSH-VFVNGAPCKDPKTAHADDFYFTG-LDKQGNFSNPMGSKATPV 66
+D + + DFCVAD+ V VNG CK P + DDF F+ L K GN S P GS T +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 67 YVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA-PDYRHF 125
V + PG NTLG+SM RVDFAP G NPPH HPRA+EI +++G L VG +G+ + +
Sbjct: 60 DVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 126 SKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALFTSKPVLNDEII 185
S+++ G+ FV P GL+H+Q NVGK A + + NSQNPG + LF S P + ++
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 186 SKTFLFDKKNVAILRSKF 203
+K + V +L+SKF
Sbjct: 180 TKALRVEAGVVELLKSKF 197
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 121/198 (61%), Gaps = 4/198 (2%)
Query: 9 ADSNNILDFCVADIYSH-VFVNGAPCKDPKTAHADDFYFTG-LDKQGNFSNPMGSKATPV 66
+D + + DFCVAD+ V VNG CK P + DDF F+ L K GN S P GS T +
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTEL 59
Query: 67 YVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA-PDYRHF 125
V + PG NTLG+SM RVDFAP G NPPH HPRA+EI +++G L VG +G+ + +
Sbjct: 60 DVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY 119
Query: 126 SKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALFTSKPVLNDEII 185
S+++ G+ FV P GL+H+Q NVGK A + + NSQNPG + LF S P + ++
Sbjct: 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVL 179
Query: 186 SKTFLFDKKNVAILRSKF 203
+K + V +L+SKF
Sbjct: 180 TKALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 120/197 (60%), Gaps = 4/197 (2%)
Query: 10 DSNNILDFCVADIYSH-VFVNGAPCKDPKTAHADDFYFTG-LDKQGNFSNPMGSKATPVY 67
D + + DFCVAD+ V VNG CK P + DDF F+ L K GN S P GS T +
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELD 60
Query: 68 VQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA-PDYRHFS 126
V + PG NTLG+SM RVDFAP G NPPH HPRA+EI +++G L VG +G+ + +S
Sbjct: 61 VAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYS 120
Query: 127 KILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALFTSKPVLNDEIIS 186
+++ G+ FV P GL+H+Q NVGK A + + NSQNPG + LF S P + +++
Sbjct: 121 RVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLT 180
Query: 187 KTFLFDKKNVAILRSKF 203
K + V +L+SKF
Sbjct: 181 KALRVEAGVVELLKSKF 197
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVF 137
G++ V + P + H H A+E ++EG + T+P+ + ++KG ++ F
Sbjct: 51 GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITL--TSPEGKVEIADVDKGGLWYF 108
Query: 138 PMGLLHYQRNVG 149
P G H +G
Sbjct: 109 PRGWGHSIEGIG 120
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 69 QQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKI 128
++ PG + ++ + P + H HP A E +L+G +++ A + +
Sbjct: 226 KEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVF--ASEGKASVSR 281
Query: 129 LNKGDVFVFPMGLLHYQRNV-------------GKVNAVAIAALNSQNPG-----TSSIA 170
L +GDV P G H RN G ++ ++ + NP T I+
Sbjct: 282 LQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLSTWLASNPSSVLGNTFQIS 341
Query: 171 PALFTSKPVLNDEIIS 186
P L PV D I S
Sbjct: 342 PELTKKLPV-QDTIFS 356
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 75 NTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIG-----TAPDYRHFSKIL 129
N+L + + ++ L PH + +A I+ + EG V +G +Y + L
Sbjct: 235 NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL 294
Query: 130 NKGDVFVFP 138
+K DVFV P
Sbjct: 295 SKDDVFVIP 303
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 123 RHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQN 163
RHF N+GDV V P G+ ++ N G VAI+ L++ N
Sbjct: 115 RHF----NEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSN 151
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 6/153 (3%)
Query: 52 QGNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTL 111
+ +F NP + + + +P L GLS V +G+ PH + A+ ++ + G
Sbjct: 340 RADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKG 399
Query: 112 EVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAP 171
V + + F L +G + V P + ++ G + + + SS
Sbjct: 400 RVRVVNXQGNAV-FDGELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIK 456
Query: 172 ALFTSKPVLNDEIISKTFLFDKKNVAILRSKFN 204
+F + P E++S ++ + V L+ + N
Sbjct: 457 DVFRAIP---SEVLSNSYNLGQSQVRQLKYQGN 486
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 123 RHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQN 163
RHF N+GDV V P G+ ++ N G VAI+ L++ N
Sbjct: 114 RHF----NEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSN 150
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 6/153 (3%)
Query: 52 QGNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTL 111
+ +F NP + + + +P L GLS V +G+ PH + A+ ++ + G
Sbjct: 339 RADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKG 398
Query: 112 EVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAP 171
V + + F L +G + V P + ++ G + + + SS
Sbjct: 399 RVRVVNCQGNAV-FDGELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIK 455
Query: 172 ALFTSKPVLNDEIISKTFLFDKKNVAILRSKFN 204
+F + P E++S ++ + V L+ + N
Sbjct: 456 DVFRAIP---SEVLSNSYNLGQSQVRQLKYQGN 485
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 71 IPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILN 130
I N +V+V+ G H H E+ + EGTL++ F R + L
Sbjct: 25 IAEXNDYQFKLVKVE----GEFVWHEHADTDEVFIVXEGTLQIAF-------RDQNITLQ 73
Query: 131 KGDVFVFPMGLLH 143
G+ +V P G+ H
Sbjct: 74 AGEXYVIPKGVEH 86
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P + H HP E + G
Sbjct: 233 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAMRELHWHPNTHEWQYYISGKAR 290
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ + R F+ GDV P + HY N+G
Sbjct: 291 MTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 60 GSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA 119
G A V V+++P + L+ V + P + H H A E ++ G+ V +
Sbjct: 62 GGYAREVTVRELP--ISENLASVNMRLKPGAIAELHWHKEA-EWAYMIYGSARVTIVDEK 118
Query: 120 PDYRHFSKILNKGDVFVFPMGLLH 143
R F + +GD++ FP GL H
Sbjct: 119 G--RSFIDDVGEGDLWYFPSGLPH 140
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P + H HP E + G
Sbjct: 233 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAMRELHWHPNTHEWQYYISGKAR 290
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ + R F+ GDV P + HY N+G
Sbjct: 291 MTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 60 GSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA 119
G A V V+++P + L+ V + P + H H A E ++ G+ V +
Sbjct: 62 GGYAREVTVRELP--ISENLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEK 118
Query: 120 PDYRHFSKILNKGDVFVFPMGLLH 143
R F + +GD++ FP GL H
Sbjct: 119 G--RSFIDDVGEGDLWYFPSGLPH 140
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P + H HP E + G
Sbjct: 233 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAMRELHWHPNTHEWQYYISGKAR 290
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ + R F+ GDV P + HY N+G
Sbjct: 291 MTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 60 GSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA 119
G A V V+++P + L+ V + P + H H A E ++ G+ V +
Sbjct: 62 GGYAREVTVRELP--ISENLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEK 118
Query: 120 PDYRHFSKILNKGDVFVFPMGLLH 143
R F + +GD++ FP GL H
Sbjct: 119 G--RSFIDDVGEGDLWYFPSGLPH 140
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P + H HP E + G
Sbjct: 233 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAMRELHWHPNTHEWQYYISGKAR 290
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ + R F+ GDV P + HY N+G
Sbjct: 291 MTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 60 GSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA 119
G A V V+++P + L+ V + P + H H A E ++ G+ V +
Sbjct: 62 GGYAREVTVRELP--ISENLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEK 118
Query: 120 PDYRHFSKILNKGDVFVFPMGLLH 143
R F + +GD++ FP GL H
Sbjct: 119 G--RSFIDDVGEGDLWYFPSGLPH 140
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P + H HP E + G
Sbjct: 233 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAMRELHWHPNTHEWQYYISGKAR 290
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ + R F+ GDV P + HY N+G
Sbjct: 291 MTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 325
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 60 GSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA 119
G A V V+++P + L+ V + P + H H A E ++ G+ V +
Sbjct: 62 GGYAREVTVRELP--ISENLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEK 118
Query: 120 PDYRHFSKILNKGDVFVFPMGLLH 143
R F + +GD++ FP GL H
Sbjct: 119 G--RSFIDDVGEGDLWYFPSGLPH 140
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P + H HP E + G
Sbjct: 231 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAMRELHWHPNTHEWQYYISGKAR 288
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ + R F+ GDV P + HY N+G
Sbjct: 289 MTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 323
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 60 GSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA 119
G A V V+++P + L+ V + P + H H A E ++ G+ V +
Sbjct: 62 GGYAREVTVRELP--ISENLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEK 118
Query: 120 PDYRHFSKILNKGDVFVFPMGLLH 143
R F + +GD++ FP GL H
Sbjct: 119 G--RSFIDDVGEGDLWYFPSGLPH 140
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P + H HP E + G
Sbjct: 228 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAMRELHWHPNTHEWQYYISGKAR 285
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ + R F+ GDV P + HY N+G
Sbjct: 286 MTVFASDGHARTFN--YQAGDVGYVPFAMGHYVENIG 320
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 60 GSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA 119
G A V V+++P + L+ V + P + H H A E ++ G+ V +
Sbjct: 57 GGYAREVTVRELP--ISENLASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEK 113
Query: 120 PDYRHFSKILNKGDVFVFPMGLLH 143
R F + +GD++ FP GL H
Sbjct: 114 G--RSFIDDVGEGDLWYFPSGLPH 135
>pdb|4I83|A Chain A, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
From Neisseria Meningitidis Fam18
pdb|4I83|C Chain C, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
From Neisseria Meningitidis Fam18
pdb|4I83|B Chain B, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
From Neisseria Meningitidis Fam18
pdb|4I83|D Chain D, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
From Neisseria Meningitidis Fam18
pdb|4I83|E Chain E, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
From Neisseria Meningitidis Fam18
pdb|4I83|F Chain F, Crystal Structure Of (3r)-hydroxymyristoyl-acp Dehydratase
From Neisseria Meningitidis Fam18
Length = 152
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 121 DYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVA 155
D F + + GD VF + LL +R +GK NAVA
Sbjct: 99 DEARFKRQVIPGDQLVFEVELLTSRRGIGKFNAVA 133
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 15/144 (10%)
Query: 31 APCKDPKTAHADDFYFTGLDKQGNFSNPMGS--KATPVYVQQIPGLNTLGLSMVRVDFAP 88
A KT + D F + +SN G + TP Q+ L+ L L+ ++++
Sbjct: 234 AQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDIL-LNCLQMN--E 290
Query: 89 DGLNPPHTHPRASEIMTLLEGTLEVGFIGT---------APDYRHFSKILNKGDVFVFPM 139
L PH + RA+ I+ EG EV +G + R ++ L++GD+ V P
Sbjct: 291 GALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPS 350
Query: 140 GLLHYQRNVGKVNAVAIAALNSQN 163
+ +N V I +N++N
Sbjct: 351 SFPVALKAASDLNMVGI-GVNAEN 373
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 108 EGTLEVGFIGTA-PDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQN 163
+G+ + G G D + L +GD+F P G+ H+ N G VA+ +++ N
Sbjct: 112 QGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 94 PHTHPRASEIMTLLEGTLEVGFIGT---------APDYRHFSKILNKGDVFVFPMGLLHY 144
PH + RA+ I+ EG EV +G + R ++ L++GD+ V P
Sbjct: 56 PHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVA 115
Query: 145 QRNVGKVNAVAIAALNSQN 163
+ +N V I +N++N
Sbjct: 116 LKAASDLNMVGI-GVNAEN 133
>pdb|2V8J|A Chain A, Structure Of A Family 2 Pectate Lyase In Complex With A
Transition Metal
Length = 535
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 39 AHADDFYFTGLDKQGNFSNPMGSKATPVYVQQIPGLNTLGLSMV 82
AH D+ + G + PMG+ + QQ P T GLS +
Sbjct: 155 AHVYDWRILETSRHGEYGKPMGALWESKFEQQPPFFATKGLSFL 198
>pdb|2V8I|A Chain A, Structure Of A Family 2 Pectate Lyase In A Native Form
pdb|2V8K|A Chain A, Structure Of A Family 2 Pectate Lyase In Complex With
Trigalacturonic Acid
Length = 543
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 39 AHADDFYFTGLDKQGNFSNPMGSKATPVYVQQIPGLNTLGLSMV 82
AH D+ + G + PMG+ + QQ P T GLS +
Sbjct: 156 AHVYDWRILETSRHGEYGKPMGALWESKFEQQPPFFATKGLSFL 199
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 56 SNPMGSKATPVYVQQIPGLN---TLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLE 112
P+ S+ VY+ T+ ++V V+ P H HP E + G
Sbjct: 233 QEPIESEGGKVYIADSTNFKVSKTIASALVTVE--PGAXRELHWHPNTHEWQYYISGKAR 290
Query: 113 VGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149
+ R F+ GDV P HY N+G
Sbjct: 291 XTVFASDGHARTFN--YQAGDVGYVPFAXGHYVENIG 325
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 36/137 (26%)
Query: 38 TAHADDFYFTGLDKQGNFSNPMGSKATPVYV-------------QQIPGLNTLGLSMVRV 84
T HA G +++G+ +NP+ + + ++ P L L + + V
Sbjct: 208 TKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTXV 267
Query: 85 DFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAP-----------------------D 121
+ L PH + +A I+ + +GT + + +
Sbjct: 268 EIKEGALVLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNRE 327
Query: 122 YRHFSKILNKGDVFVFP 138
R ++ L +GDVF+ P
Sbjct: 328 VRRYTARLKEGDVFIMP 344
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 36/137 (26%)
Query: 38 TAHADDFYFTGLDKQGNFSNPMGSKATPVYV-------------QQIPGLNTLGLSMVRV 84
T HA G +++G+ +NP+ + + ++ P L L + + V
Sbjct: 209 TKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCV 268
Query: 85 DFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAP-----------------------D 121
+ L PH + +A I+ + +GT + + +
Sbjct: 269 EIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNRE 328
Query: 122 YRHFSKILNKGDVFVFP 138
R ++ L +GDVF+ P
Sbjct: 329 VRRYTARLKEGDVFIMP 345
>pdb|3LHO|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_751971.1) From
Shewanella Frigidimarina Ncimb 400 At 1.80 A Resolution
Length = 267
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 164 PGTSSIAPALFTSKPVLNDEIISKTFLFDKKNVAILRSKF 203
P + I L P++ND I +TF K N+++L F
Sbjct: 22 PSAAKIHQLLGHGAPIINDHIALRTFNIAKVNLSVLAKHF 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,280,721
Number of Sequences: 62578
Number of extensions: 260751
Number of successful extensions: 532
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 42
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)