Query 048039
Match_columns 204
No_of_seqs 297 out of 1676
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 1.4E-25 3E-30 198.3 19.0 157 35-201 205-361 (367)
2 PLN00212 glutelin; Provisional 99.9 1.4E-22 3.1E-27 183.8 17.9 146 53-203 322-469 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 5.9E-22 1.3E-26 175.3 17.5 151 38-202 32-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 3.6E-21 7.8E-26 149.4 10.2 127 57-196 11-143 (144)
5 smart00835 Cupin_1 Cupin. This 99.8 8.9E-20 1.9E-24 141.9 17.0 135 57-196 8-145 (146)
6 PLN00212 glutelin; Provisional 99.8 2E-18 4.4E-23 156.8 16.0 136 63-202 64-249 (493)
7 COG2140 Thermophilic glucose-6 99.7 1.1E-16 2.4E-21 129.9 13.1 150 40-203 49-200 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 1.7E-14 3.7E-19 97.9 6.6 70 83-159 2-71 (71)
9 PRK13290 ectC L-ectoine syntha 99.5 7.1E-13 1.5E-17 100.8 12.0 81 77-166 33-114 (125)
10 COG0662 {ManC} Mannose-6-phosp 99.5 9.7E-13 2.1E-17 100.2 12.0 82 77-165 34-115 (127)
11 COG1917 Uncharacterized conser 99.5 7.4E-13 1.6E-17 100.9 11.2 85 70-161 34-118 (131)
12 PRK11171 hypothetical protein; 99.4 2.4E-11 5.1E-16 103.6 15.1 109 35-160 27-136 (266)
13 PRK04190 glucose-6-phosphate i 99.4 2.5E-11 5.5E-16 98.5 14.4 97 63-162 53-157 (191)
14 COG3837 Uncharacterized conser 99.3 1E-11 2.3E-16 96.3 10.2 93 69-170 34-129 (161)
15 PRK09943 DNA-binding transcrip 99.3 4.7E-11 1E-15 96.3 12.0 76 77-160 105-181 (185)
16 PRK15460 cpsB mannose-1-phosph 99.3 4.3E-11 9.3E-16 109.4 12.2 77 78-161 384-460 (478)
17 TIGR01479 GMP_PMI mannose-1-ph 99.3 4.7E-11 1E-15 109.1 12.4 78 78-162 375-452 (468)
18 COG4101 Predicted mannose-6-ph 99.3 4.4E-11 9.5E-16 88.8 9.6 84 78-166 45-129 (142)
19 PF01050 MannoseP_isomer: Mann 99.2 1.5E-10 3.3E-15 90.7 10.8 76 78-160 62-137 (151)
20 TIGR03214 ura-cupin putative a 99.2 3.5E-10 7.6E-15 96.1 13.4 76 78-160 57-133 (260)
21 PRK11171 hypothetical protein; 99.1 1.3E-09 2.7E-14 93.0 12.5 75 78-160 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.1 9E-10 1.9E-14 93.6 10.9 74 78-158 178-251 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.0 1.2E-08 2.6E-13 78.7 12.8 98 71-171 38-138 (167)
24 TIGR03037 anthran_nbaC 3-hydro 98.8 5E-08 1.1E-12 76.8 9.4 66 87-158 36-101 (159)
25 PRK13264 3-hydroxyanthranilate 98.8 5.4E-08 1.2E-12 77.7 9.1 69 84-158 39-107 (177)
26 PF06560 GPI: Glucose-6-phosph 98.7 2.9E-07 6.3E-12 74.1 11.5 84 77-162 48-147 (182)
27 PF02311 AraC_binding: AraC-li 98.6 2E-07 4.4E-12 69.2 7.5 65 88-160 12-76 (136)
28 PF12973 Cupin_7: ChrR Cupin-l 98.6 2.4E-07 5.2E-12 66.3 7.3 81 59-157 8-88 (91)
29 TIGR02451 anti_sig_ChrR anti-s 98.5 4.1E-07 8.8E-12 75.3 7.6 72 79-162 127-198 (215)
30 PRK15457 ethanolamine utilizat 98.5 2.2E-06 4.8E-11 71.1 11.5 70 78-159 156-225 (233)
31 PRK10371 DNA-binding transcrip 98.5 9.7E-07 2.1E-11 76.4 9.1 59 84-150 31-89 (302)
32 PF11699 CENP-C_C: Mif2/CENP-C 98.4 3.6E-06 7.9E-11 59.7 9.3 73 78-158 11-84 (85)
33 PF03079 ARD: ARD/ARD' family; 98.3 4.9E-06 1.1E-10 65.6 9.6 71 92-166 85-155 (157)
34 PF06339 Ectoine_synth: Ectoin 98.3 9E-06 1.9E-10 61.3 10.3 84 75-166 31-114 (126)
35 TIGR02272 gentisate_1_2 gentis 98.2 9.5E-06 2.1E-10 71.3 9.8 75 79-160 81-155 (335)
36 COG1791 Uncharacterized conser 98.2 1.5E-05 3.3E-10 63.0 9.9 73 93-169 89-161 (181)
37 PF14499 DUF4437: Domain of un 98.2 5.1E-06 1.1E-10 70.1 7.4 105 38-156 2-106 (251)
38 PRK10296 DNA-binding transcrip 98.2 1.5E-05 3.3E-10 67.6 10.3 52 89-148 33-84 (278)
39 PRK13501 transcriptional activ 98.2 6.9E-06 1.5E-10 70.2 8.3 55 87-149 26-80 (290)
40 PRK13500 transcriptional activ 98.1 1.8E-05 3.9E-10 68.6 8.8 56 87-150 56-111 (312)
41 TIGR02297 HpaA 4-hydroxyphenyl 98.0 1.8E-05 3.8E-10 67.3 7.9 61 89-156 33-93 (287)
42 COG3435 Gentisate 1,2-dioxygen 98.0 1.2E-05 2.7E-10 68.8 6.7 90 64-160 72-166 (351)
43 COG3257 GlxB Uncharacterized p 98.0 4.8E-05 1E-09 62.5 9.6 75 79-160 61-136 (264)
44 PF05523 FdtA: WxcM-like, C-te 98.0 3.6E-05 7.8E-10 58.9 8.1 95 60-162 15-112 (131)
45 PRK13502 transcriptional activ 98.0 3.8E-05 8.2E-10 65.2 8.6 56 87-150 26-81 (282)
46 PF06052 3-HAO: 3-hydroxyanthr 97.9 0.0001 2.3E-09 57.2 9.7 79 82-166 36-114 (151)
47 PRK13503 transcriptional activ 97.9 2.5E-05 5.4E-10 65.9 6.8 53 88-148 24-76 (278)
48 COG4297 Uncharacterized protei 97.9 2.3E-05 5E-10 59.9 5.4 67 89-160 52-119 (163)
49 PF05899 Cupin_3: Protein of u 97.8 5.2E-05 1.1E-09 52.3 5.3 59 80-147 8-66 (74)
50 KOG2107 Uncharacterized conser 97.7 0.0001 2.2E-09 58.1 6.3 56 92-150 86-141 (179)
51 TIGR02272 gentisate_1_2 gentis 97.6 0.00033 7.1E-09 61.6 8.9 65 84-158 255-319 (335)
52 COG4766 EutQ Ethanolamine util 97.6 0.0014 3.1E-08 51.0 10.7 69 78-158 99-167 (176)
53 PF06249 EutQ: Ethanolamine ut 97.5 0.00018 4E-09 56.3 5.3 68 79-158 77-144 (152)
54 PF05995 CDO_I: Cysteine dioxy 97.2 0.0076 1.6E-07 48.3 11.5 85 78-162 74-165 (175)
55 COG3450 Predicted enzyme of th 97.1 0.0014 2.9E-08 49.2 5.9 49 93-147 56-104 (116)
56 COG3435 Gentisate 1,2-dioxygen 96.9 0.0036 7.8E-08 54.0 7.4 65 85-158 267-331 (351)
57 PF14499 DUF4437: Domain of un 96.8 0.0014 3E-08 55.5 3.8 94 57-161 153-246 (251)
58 COG1898 RfbC dTDP-4-dehydrorha 96.6 0.018 3.9E-07 46.1 8.8 70 88-157 54-130 (173)
59 TIGR01221 rmlC dTDP-4-dehydror 96.5 0.062 1.3E-06 43.2 11.2 73 87-160 52-132 (176)
60 PF04209 HgmA: homogentisate 1 96.5 0.05 1.1E-06 49.4 11.7 107 39-158 86-195 (424)
61 COG3257 GlxB Uncharacterized p 96.3 0.04 8.8E-07 45.6 9.2 73 77-157 180-253 (264)
62 COG3806 ChrR Transcriptional a 96.1 0.026 5.6E-07 46.0 7.2 90 56-162 110-199 (216)
63 PF00908 dTDP_sugar_isom: dTDP 96.0 0.057 1.2E-06 43.4 8.7 70 87-156 51-129 (176)
64 PRK10572 DNA-binding transcrip 95.9 0.037 8.1E-07 47.0 7.7 48 94-149 44-91 (290)
65 PF07385 DUF1498: Protein of u 95.8 0.063 1.4E-06 44.5 8.2 78 82-161 90-188 (225)
66 PF12852 Cupin_6: Cupin 95.6 0.027 5.8E-07 45.0 5.5 43 101-148 36-78 (186)
67 PF08007 Cupin_4: Cupin superf 95.6 0.13 2.9E-06 44.9 10.2 67 82-149 116-200 (319)
68 PF02678 Pirin: Pirin; InterP 95.6 0.057 1.2E-06 39.9 6.6 64 89-158 39-105 (107)
69 PF13621 Cupin_8: Cupin-like d 95.4 0.062 1.3E-06 44.1 7.2 71 81-152 132-236 (251)
70 PF07847 DUF1637: Protein of u 95.4 0.11 2.4E-06 42.6 8.2 83 78-161 43-143 (200)
71 KOG3995 3-hydroxyanthranilate 95.2 0.045 9.8E-07 45.1 5.5 56 86-145 40-95 (279)
72 PRK05341 homogentisate 1,2-dio 95.2 0.32 6.9E-06 44.3 11.2 58 93-158 147-204 (438)
73 TIGR01015 hmgA homogentisate 1 95.0 0.35 7.5E-06 43.9 11.0 61 93-160 141-201 (429)
74 COG5553 Predicted metal-depend 94.9 0.19 4.2E-06 39.7 8.0 79 79-159 73-155 (191)
75 PRK00924 5-keto-4-deoxyuronate 94.8 0.22 4.8E-06 42.7 8.8 84 78-165 174-263 (276)
76 COG1741 Pirin-related protein 94.8 0.12 2.5E-06 44.5 7.2 70 84-159 49-122 (276)
77 PLN02658 homogentisate 1,2-dio 94.8 0.39 8.3E-06 43.7 10.6 55 95-157 142-196 (435)
78 PF05118 Asp_Arg_Hydrox: Aspar 94.6 0.13 2.8E-06 40.7 6.5 70 80-156 81-155 (163)
79 COG3822 ABC-type sugar transpo 94.5 0.27 5.9E-06 39.9 8.1 79 82-162 89-188 (225)
80 PF13759 2OG-FeII_Oxy_5: Putat 94.4 0.13 2.8E-06 37.1 5.7 67 84-150 5-92 (101)
81 TIGR02466 conserved hypothetic 94.3 0.22 4.8E-06 40.8 7.5 80 81-160 98-197 (201)
82 PF06865 DUF1255: Protein of u 94.3 0.47 1E-05 34.2 8.1 66 84-159 28-93 (94)
83 PRK09685 DNA-binding transcrip 94.2 0.32 6.9E-06 41.4 8.7 66 78-150 44-114 (302)
84 PRK12335 tellurite resistance 93.9 0.29 6.2E-06 41.9 7.8 63 87-150 19-83 (287)
85 PRK10579 hypothetical protein; 93.8 0.52 1.1E-05 33.9 7.6 54 98-158 39-92 (94)
86 PF05726 Pirin_C: Pirin C-term 93.5 0.25 5.3E-06 36.0 5.7 69 82-160 2-70 (104)
87 PF11142 DUF2917: Protein of u 93.3 0.45 9.8E-06 31.6 6.2 57 84-147 2-58 (63)
88 PF14525 AraC_binding_2: AraC- 93.1 1.3 2.9E-05 33.8 9.7 67 79-152 34-100 (172)
89 PF02373 JmjC: JmjC domain, hy 93.0 0.2 4.4E-06 36.2 4.6 28 124-151 80-107 (114)
90 KOG3706 Uncharacterized conser 92.9 0.095 2E-06 48.1 3.2 62 87-149 325-405 (629)
91 PF09313 DUF1971: Domain of un 92.4 1.3 2.7E-05 31.2 7.7 53 98-150 23-75 (82)
92 PLN02288 mannose-6-phosphate i 92.2 0.48 1E-05 42.8 6.7 58 78-141 333-390 (394)
93 PRK15131 mannose-6-phosphate i 91.9 1.3 2.8E-05 40.0 9.2 59 78-146 320-378 (389)
94 TIGR00218 manA mannose-6-phosp 91.2 1.8 3.8E-05 37.5 9.0 59 78-146 234-292 (302)
95 COG3508 HmgA Homogentisate 1,2 91.0 3.5 7.5E-05 36.7 10.6 58 93-158 139-196 (427)
96 KOG2757 Mannose-6-phosphate is 90.2 1.8 3.8E-05 38.7 8.1 71 78-156 332-402 (411)
97 PF04622 ERG2_Sigma1R: ERG2 an 88.3 1.3 2.9E-05 36.7 5.7 93 90-195 112-206 (216)
98 PRK11753 DNA-binding transcrip 88.2 4.4 9.6E-05 32.2 8.8 120 82-203 21-192 (211)
99 PRK09391 fixK transcriptional 87.4 5.4 0.00012 32.7 9.0 78 79-158 36-113 (230)
100 PF04962 KduI: KduI/IolB famil 87.2 12 0.00026 31.9 11.1 97 62-164 136-248 (261)
101 COG3123 Uncharacterized protei 86.8 2.4 5.3E-05 29.9 5.4 43 99-146 40-82 (94)
102 COG2850 Uncharacterized conser 86.2 1.3 2.8E-05 39.5 4.7 63 85-148 125-202 (383)
103 PHA02984 hypothetical protein; 85.1 7.8 0.00017 33.2 8.6 68 103-174 96-163 (286)
104 COG1482 ManA Phosphomannose is 84.3 8.1 0.00018 33.9 8.8 58 78-145 241-298 (312)
105 PRK00924 5-keto-4-deoxyuronate 82.7 11 0.00025 32.4 8.9 52 100-158 73-127 (276)
106 PF04962 KduI: KduI/IolB famil 82.7 11 0.00024 32.1 8.8 70 79-157 27-104 (261)
107 PHA02890 hypothetical protein; 81.3 13 0.00029 31.6 8.5 68 101-174 91-160 (278)
108 PF00027 cNMP_binding: Cyclic 81.2 2.8 6E-05 28.1 3.9 34 100-135 17-51 (91)
109 PRK03606 ureidoglycolate hydro 78.4 21 0.00046 28.2 8.5 66 93-158 72-140 (162)
110 COG1482 ManA Phosphomannose is 77.0 2.2 4.8E-05 37.3 2.8 23 124-146 157-179 (312)
111 PF04115 Ureidogly_hydro: Urei 76.4 20 0.00043 28.3 7.9 67 94-160 74-145 (165)
112 PRK13918 CRP/FNR family transc 76.0 10 0.00022 30.0 6.3 54 83-137 8-62 (202)
113 cd00038 CAP_ED effector domain 75.7 10 0.00022 26.0 5.6 52 82-135 18-69 (115)
114 smart00100 cNMP Cyclic nucleot 75.6 13 0.00028 25.4 6.2 54 82-137 18-71 (120)
115 PRK15131 mannose-6-phosphate i 74.8 3.2 6.9E-05 37.4 3.3 23 124-146 236-258 (389)
116 PF06172 Cupin_5: Cupin superf 74.6 37 0.0008 26.1 10.9 79 79-160 41-126 (139)
117 PRK15186 AraC family transcrip 74.3 12 0.00025 32.4 6.6 46 101-152 39-84 (291)
118 TIGR00218 manA mannose-6-phosp 74.0 1.8 3.9E-05 37.5 1.5 21 125-145 151-171 (302)
119 PRK10402 DNA-binding transcrip 71.0 18 0.0004 29.3 6.8 52 84-137 34-85 (226)
120 PRK10202 ebgC cryptic beta-D-g 69.3 51 0.0011 25.5 9.2 54 93-146 58-127 (149)
121 COG3717 KduI 5-keto 4-deoxyuro 68.5 22 0.00047 30.1 6.6 84 78-165 176-265 (278)
122 PF13640 2OG-FeII_Oxy_3: 2OG-F 68.4 7.3 0.00016 27.3 3.4 27 129-155 66-93 (100)
123 PLN02868 acyl-CoA thioesterase 68.3 18 0.00038 32.6 6.7 53 82-137 32-84 (413)
124 COG2731 EbgC Beta-galactosidas 66.7 35 0.00076 26.8 7.1 60 91-150 60-137 (154)
125 COG3718 IolB Uncharacterized e 64.9 87 0.0019 26.6 10.5 83 63-150 16-102 (270)
126 PHA00672 hypothetical protein 63.5 51 0.0011 25.2 7.1 73 78-161 46-118 (152)
127 KOG2130 Phosphatidylserine-spe 62.3 14 0.00031 32.6 4.5 46 123-168 261-306 (407)
128 PF06719 AraC_N: AraC-type tra 61.6 37 0.0008 26.2 6.5 52 101-159 24-78 (155)
129 PRK13395 ureidoglycolate hydro 59.9 77 0.0017 25.3 8.1 67 93-159 72-142 (171)
130 PLN02288 mannose-6-phosphate i 57.6 8.1 0.00018 35.0 2.4 21 126-146 252-272 (394)
131 PF04074 DUF386: Domain of unk 56.4 86 0.0019 24.1 7.8 55 92-146 61-134 (153)
132 KOG4281 Uncharacterized conser 56.2 5 0.00011 33.3 0.7 38 78-115 74-111 (236)
133 TIGR00022 uncharacterized prot 55.5 51 0.0011 25.1 6.3 55 91-145 60-133 (142)
134 PRK11161 fumarate/nitrate redu 55.1 44 0.00095 27.0 6.3 52 84-137 40-91 (235)
135 PRK14585 pgaD putative PGA bio 53.8 16 0.00035 28.1 3.1 25 178-202 88-112 (137)
136 COG0664 Crp cAMP-binding prote 53.7 45 0.00098 25.8 6.0 56 82-139 24-79 (214)
137 TIGR03697 NtcA_cyano global ni 53.4 30 0.00064 26.9 4.8 36 100-136 11-46 (193)
138 COG1741 Pirin-related protein 53.1 1.5E+02 0.0032 25.5 11.2 35 79-114 173-207 (276)
139 PRK09392 ftrB transcriptional 53.0 56 0.0012 26.5 6.6 51 83-136 32-82 (236)
140 PF13994 PgaD: PgaD-like prote 52.1 18 0.0004 27.6 3.3 23 180-202 101-123 (138)
141 PRK14584 hmsS hemin storage sy 48.4 23 0.00049 27.9 3.3 25 178-202 97-121 (153)
142 KOG2131 Uncharacterized conser 47.6 11 0.00024 33.8 1.5 62 88-151 207-294 (427)
143 PRK05467 Fe(II)-dependent oxyg 43.6 76 0.0016 26.5 5.9 24 125-148 141-164 (226)
144 PF05962 HutD: HutD; InterPro 43.1 42 0.00091 26.9 4.2 47 103-158 138-184 (184)
145 KOG1356 Putative transcription 40.9 10 0.00022 37.4 0.3 56 87-149 763-823 (889)
146 PF13348 Y_phosphatase3C: Tyro 38.9 25 0.00055 23.0 2.0 23 181-203 45-67 (68)
147 PF13384 HTH_23: Homeodomain-l 38.1 39 0.00084 20.4 2.6 25 179-203 17-41 (50)
148 PF02787 CPSase_L_D3: Carbamoy 36.6 30 0.00064 26.0 2.2 25 179-203 72-96 (123)
149 PF05721 PhyH: Phytanoyl-CoA d 36.4 61 0.0013 24.9 4.2 27 125-151 180-207 (211)
150 TIGR02408 ectoine_ThpD ectoine 33.9 50 0.0011 28.0 3.5 37 126-162 212-250 (277)
151 KOG0498 K+-channel ERG and rel 33.7 62 0.0013 31.8 4.4 47 86-135 447-493 (727)
152 KOG0501 K+-channel KCNQ [Inorg 32.9 67 0.0014 31.0 4.3 46 83-135 573-618 (971)
153 PF01238 PMI_typeI: Phosphoman 32.7 35 0.00076 30.5 2.4 22 126-147 251-272 (373)
154 PRK02290 3-dehydroquinate synt 32.5 2.5E+02 0.0055 25.0 7.6 85 57-147 249-336 (344)
155 PLN03192 Voltage-dependent pot 31.9 94 0.002 30.7 5.4 50 83-135 399-448 (823)
156 KOG1417 Homogentisate 1,2-diox 29.7 4E+02 0.0086 23.6 12.3 60 95-161 150-209 (446)
157 PF12937 F-box-like: F-box-lik 28.9 72 0.0016 19.0 2.7 21 179-199 3-24 (47)
158 KOG0500 Cyclic nucleotide-gate 27.1 1.1E+02 0.0024 28.7 4.6 47 84-135 333-379 (536)
159 PF00325 Crp: Bacterial regula 26.0 54 0.0012 18.7 1.6 24 180-203 3-26 (32)
160 PF02209 VHP: Villin headpiece 24.8 71 0.0015 18.8 2.0 21 180-200 2-22 (36)
161 KOG3416 Predicted nucleic acid 24.8 1.9E+02 0.0042 22.0 4.8 66 71-147 11-80 (134)
162 PF01959 DHQS: 3-dehydroquinat 24.7 4E+02 0.0086 23.9 7.5 87 57-148 259-347 (354)
163 COG3717 KduI 5-keto 4-deoxyuro 23.7 4.6E+02 0.01 22.3 7.6 65 87-158 62-129 (278)
164 PF14801 GCD14_N: tRNA methylt 23.6 1.8E+02 0.004 18.7 3.9 31 112-144 11-41 (54)
165 smart00153 VHP Villin headpiec 22.9 88 0.0019 18.3 2.1 21 180-200 2-22 (36)
166 PF01987 AIM24: Mitochondrial 22.5 2E+02 0.0044 23.0 5.1 43 102-147 131-173 (215)
167 COG5553 Predicted metal-depend 22.3 2.1E+02 0.0046 22.9 4.8 41 126-166 130-177 (191)
168 COG3615 TehB Uncharacterized p 22.2 3.1E+02 0.0068 19.9 6.4 52 99-151 35-87 (99)
169 KOG2132 Uncharacterized conser 20.8 1.2E+02 0.0025 27.0 3.4 76 71-147 242-348 (355)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.94 E-value=1.4e-25 Score=198.33 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=139.8
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEE
Q 048039 35 DPKTAHADDFYFTGLDKQGNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVG 114 (204)
Q Consensus 35 ~~~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~ 114 (204)
.+..-.+..|+|+....++. ...|++++.++..++|.++ ++++++++++||++.++|||+++.|++||++|++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~ 280 (367)
T TIGR03404 205 GPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMT 280 (367)
T ss_pred CCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEE
Confidence 34444566799998877763 4677889999999999887 5899999999999999999999999999999999999
Q ss_pred EEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCceecccccccCCCCCCHHHHHHhcCCCHH
Q 048039 115 FIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALFTSKPVLNDEIISKTFLFDKK 194 (204)
Q Consensus 115 ~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~~~p~~~~~vl~~~f~~~~~ 194 (204)
+.+++ ++.+++.|++||+++||+|..|++.|.|++++++++++++..++.+.+++++.. +|++||+++|+++.+
T Consensus 281 v~d~~--g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~~----~p~~vl~~~~~~~~~ 354 (367)
T TIGR03404 281 VFAAG--GNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLAL----TPPQLVAAHLNLDDE 354 (367)
T ss_pred EEecC--CcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHhh----CCHHHHHHHhCcCHH
Confidence 98765 344789999999999999999999999999999999999999999999888733 999999999999999
Q ss_pred HHHHHHh
Q 048039 195 NVAILRS 201 (204)
Q Consensus 195 ~v~~l~~ 201 (204)
.+++|++
T Consensus 355 ~~~~l~~ 361 (367)
T TIGR03404 355 VIDSLKK 361 (367)
T ss_pred HHHhccc
Confidence 9999985
No 2
>PLN00212 glutelin; Provisional
Probab=99.90 E-value=1.4e-22 Score=183.81 Aligned_cols=146 Identities=20% Similarity=0.331 Sum_probs=127.3
Q ss_pred CCCCCCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCC
Q 048039 53 GNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKG 132 (204)
Q Consensus 53 ~~~~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~G 132 (204)
.+++++.+++++.++..++|+|+++++++.++.|.+|++.+||||++|.|++||++|+++++++++++ ++++...|++|
T Consensus 322 ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g-~~vf~~~L~~G 400 (493)
T PLN00212 322 ADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG-KTVFNGVLRPG 400 (493)
T ss_pred cCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC-CEEEEEEEcCC
Confidence 45678999999999999999999999999999999999999999999999999999999999998765 56788899999
Q ss_pred cEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCceecc--cccccCCCCCCHHHHHHhcCCCHHHHHHHHhcC
Q 048039 133 DVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIA--PALFTSKPVLNDEIISKTFLFDKKNVAILRSKF 203 (204)
Q Consensus 133 d~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~--~~~f~~~p~~~~~vl~~~f~~~~~~v~~l~~~~ 203 (204)
|+++||+|.+|.... +++...+++.-++.++-...++ .++|++ ||.+||+++|+++.+++++|+..+
T Consensus 401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n~ 469 (493)
T PLN00212 401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNNR 469 (493)
T ss_pred CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhcc
Confidence 999999999998765 4566777777665554333332 688886 999999999999999999999764
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.89 E-value=5.9e-22 Score=175.28 Aligned_cols=151 Identities=19% Similarity=0.285 Sum_probs=123.7
Q ss_pred CCCCCCcEEeccCCCCCCCCCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEe
Q 048039 38 TAHADDFYFTGLDKQGNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIG 117 (204)
Q Consensus 38 ~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~ 117 (204)
.+....|.|+.-.++ ...|++++.++..++|++++ +++.++++.||+..++|||.. .|++||++|++++++++
T Consensus 32 ~~p~~~~~~~~~~~~----~~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~~-~E~~yVl~G~~~v~~~d 104 (367)
T TIGR03404 32 SVPNLKWSFSDSHNR----LENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHKE-AEWAYVLYGSCRITAVD 104 (367)
T ss_pred ccccceeeeccccCc----cccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCCC-ceEEEEEeeEEEEEEEc
Confidence 344444555543333 23678999999999999985 799999999999999999965 89999999999999987
Q ss_pred cCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCC---CCceecccccccCCCCCCHHHHHHhcCCCHH
Q 048039 118 TAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQN---PGTSSIAPALFTSKPVLNDEIISKTFLFDKK 194 (204)
Q Consensus 118 ~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~---pg~~~~~~~~f~~~p~~~~~vl~~~f~~~~~ 194 (204)
++ ++.+.+.|++||+++||+|.+|++.|.+ +.+++++++++.. +..+.+..++ +. +|++||+++|+++++
T Consensus 105 ~~--g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~l-~~---~p~~Vla~~f~l~~~ 177 (367)
T TIGR03404 105 EN--GRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDWL-AH---TPKDVLAKNFGVPES 177 (367)
T ss_pred CC--CcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHHH-Hh---CCHHHHHHHhCCCHH
Confidence 65 4545567999999999999999999984 6688888887653 5566677664 65 999999999999999
Q ss_pred HHHHHHhc
Q 048039 195 NVAILRSK 202 (204)
Q Consensus 195 ~v~~l~~~ 202 (204)
++++|++.
T Consensus 178 ~~~~l~~~ 185 (367)
T TIGR03404 178 AFDNLPLK 185 (367)
T ss_pred HHHhcccc
Confidence 99999764
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.85 E-value=3.6e-21 Score=149.43 Aligned_cols=127 Identities=33% Similarity=0.580 Sum_probs=104.0
Q ss_pred CCCCceEEEEeccccCCCCC-ceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCC---CceeEEE--eC
Q 048039 57 NPMGSKATPVYVQQIPGLNT-LGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPD---YRHFSKI--LN 130 (204)
Q Consensus 57 ~~~g~~~~~~~~~~~P~l~~-~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~---~~~~~~~--L~ 130 (204)
...+++++.++..++|.+.. .++.+.++.+.||++..|||| ++.|++||++|+++++++.+++. .+....+ ++
T Consensus 11 ~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~ 89 (144)
T PF00190_consen 11 SNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLK 89 (144)
T ss_dssp EETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEE
T ss_pred cCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeee
Confidence 45677899999999994433 355666677899999999999 88999999999999999986410 0234555 99
Q ss_pred CCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCceecccccccCCCCCCHHHHHHhcCCCHHHH
Q 048039 131 KGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALFTSKPVLNDEIISKTFLFDKKNV 196 (204)
Q Consensus 131 ~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~~~p~~~~~vl~~~f~~~~~~v 196 (204)
+||++++|+|.+||+.|.++++...+.++.+.++... +|++|++++|+++.+++
T Consensus 90 ~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 90 AGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp TTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred cccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 9999999999999999999888888888887777664 79999999999999876
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.85 E-value=8.9e-20 Score=141.91 Aligned_cols=135 Identities=31% Similarity=0.575 Sum_probs=114.2
Q ss_pred CCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEE
Q 048039 57 NPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFV 136 (204)
Q Consensus 57 ~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~ 136 (204)
+..|+++..++...+|.+++.++.+.+++++||+..++|+|+.+.|++||++|++++.+.+..+ ++...+.+++||+++
T Consensus 8 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~-~~~~~~~l~~GD~~~ 86 (146)
T smart00835 8 SNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG-NKVYDARLREGDVFV 86 (146)
T ss_pred cCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC-CeEEEEEecCCCEEE
Confidence 4567778888888899999989999999999999999999987799999999999999975421 233589999999999
Q ss_pred ECCCCeEEEEeCCCCCEEEEEEEcCCCCCceec---ccccccCCCCCCHHHHHHhcCCCHHHH
Q 048039 137 FPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSI---APALFTSKPVLNDEIISKTFLFDKKNV 196 (204)
Q Consensus 137 ~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~---~~~~f~~~p~~~~~vl~~~f~~~~~~v 196 (204)
+|+|..|++.|.+++++++++ +.+++|..... ..++|+. +++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 999999999999999999995 56666654322 2467775 99999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.79 E-value=2e-18 Score=156.83 Aligned_cols=136 Identities=20% Similarity=0.340 Sum_probs=113.3
Q ss_pred EEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCC----------------------
Q 048039 63 ATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAP---------------------- 120 (204)
Q Consensus 63 ~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~---------------------- 120 (204)
+++.+....+.+...|+++.|++|+|+++..||+| ++.+++||++|++.++++.++-
T Consensus 64 ~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~ 142 (493)
T PLN00212 64 VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKF 142 (493)
T ss_pred eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccc
Confidence 78888888999999999999999999999999999 5699999999999999996320
Q ss_pred -CCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCC--------ceecc-------------------cc
Q 048039 121 -DYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPG--------TSSIA-------------------PA 172 (204)
Q Consensus 121 -~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg--------~~~~~-------------------~~ 172 (204)
|..-+.+.|++||++.+|+|++||+.|.|+++++++++++..++. .+.++ .+
T Consensus 143 ~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~~~n 222 (493)
T PLN00212 143 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQHSGQN 222 (493)
T ss_pred ccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccccccCc
Confidence 000123699999999999999999999999999999888744422 22222 34
Q ss_pred cccCCCCCCHHHHHHhcCCCHHHHHHHHhc
Q 048039 173 LFTSKPVLNDEIISKTFLFDKKNVAILRSK 202 (204)
Q Consensus 173 ~f~~~p~~~~~vl~~~f~~~~~~v~~l~~~ 202 (204)
+|+. ++.++|+.||+++.++++||+..
T Consensus 223 ifsG---F~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 223 IFSG---FSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred hhhc---CCHHHHHHHHCCCHHHHHHHhcc
Confidence 8885 99999999999999999999753
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=129.92 Aligned_cols=150 Identities=22% Similarity=0.252 Sum_probs=126.6
Q ss_pred CCCCcEEeccCCCCCCCCCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcE--EEEEEeCcEEEEEEe
Q 048039 40 HADDFYFTGLDKQGNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASE--IMTLLEGTLEVGFIG 117 (204)
Q Consensus 40 ~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E--~~yVl~G~~~~~~~~ 117 (204)
..+||+|..+...+.. .|+.+.......+|+. .-..+.+.||++...|||+.+.| +.|||+|++++.+.+
T Consensus 49 ~~~~~~yel~~~~~~~---~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPGE---RGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeecccccc---cCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 6889999987775543 3788888878888884 34667899999999999999998 999999999999988
Q ss_pred cCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCceecccccccCCCCCCHHHHHHhcCCCHHHHH
Q 048039 118 TAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALFTSKPVLNDEIISKTFLFDKKNVA 197 (204)
Q Consensus 118 ~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f~~~p~~~~~vl~~~f~~~~~~v~ 197 (204)
++ ++..+..+++||++++|++..|+..|+|+++++++.++....+....+-.++++ ++..+++..++.+....+
T Consensus 121 ~~--G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~D 194 (209)
T COG2140 121 PE--GEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG----MPPVLVENGLNKNPKYVD 194 (209)
T ss_pred CC--CcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc----CCceeeccccccCccccc
Confidence 77 567899999999999999999999999999999999999888877777767655 677788888888877777
Q ss_pred HHHhcC
Q 048039 198 ILRSKF 203 (204)
Q Consensus 198 ~l~~~~ 203 (204)
.++.++
T Consensus 195 ~p~~~~ 200 (209)
T COG2140 195 VPRIKF 200 (209)
T ss_pred Cccccc
Confidence 665544
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.54 E-value=1.7e-14 Score=97.87 Aligned_cols=70 Identities=30% Similarity=0.413 Sum_probs=64.3
Q ss_pred EEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEE
Q 048039 83 RVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAAL 159 (204)
Q Consensus 83 ~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~ 159 (204)
+++++||+..++|+|+...|++||++|++++.++ + +...|++||.+++|++..|.+.|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~-----~--~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD-----G--ERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEET-----T--EEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEc-----c--EEeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 5789999999999999855999999999999964 3 59999999999999999999999999999999885
No 9
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.48 E-value=7.1e-13 Score=100.82 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=70.8
Q ss_pred ceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEE-EEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEE
Q 048039 77 LGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVG-FIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVA 155 (204)
Q Consensus 77 ~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~-~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~ 155 (204)
..+++.+++++||+..+.|+|.. .|++||++|++++. +++ + +++.|++||++++|++.+|++.|. +++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~----g--~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~ 103 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT----G--EVHPIRPGTMYALDKHDRHYLRAG--EDMRL 103 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC----C--EEEEeCCCeEEEECCCCcEEEEcC--CCEEE
Confidence 35788999999999999999976 79999999999999 631 3 699999999999999999999997 89999
Q ss_pred EEEEcCCCCCc
Q 048039 156 IAALNSQNPGT 166 (204)
Q Consensus 156 i~~~~s~~pg~ 166 (204)
|++++..-+|.
T Consensus 104 l~v~tP~~~~~ 114 (125)
T PRK13290 104 VCVFNPPLTGR 114 (125)
T ss_pred EEEECCCCCCc
Confidence 99988655554
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=9.7e-13 Score=100.21 Aligned_cols=82 Identities=28% Similarity=0.276 Sum_probs=73.5
Q ss_pred ceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 77 LGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 77 ~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
...++.++.+.||+...+|.|.+..|++||++|++.+.++ + +...|++||++++|+|..|++.|.|..++.+|
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~-----~--~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li 106 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG-----G--EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI 106 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC-----C--EEEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence 3678999999999998888887789999999999999996 3 69999999999999999999999999999999
Q ss_pred EEEcCCCCC
Q 048039 157 AALNSQNPG 165 (204)
Q Consensus 157 ~~~~s~~pg 165 (204)
.+......+
T Consensus 107 ei~~p~~~~ 115 (127)
T COG0662 107 EVQSPPYLG 115 (127)
T ss_pred EEecCCcCC
Confidence 997655443
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.46 E-value=7.4e-13 Score=100.93 Aligned_cols=85 Identities=31% Similarity=0.411 Sum_probs=72.7
Q ss_pred ccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCC
Q 048039 70 QIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149 (204)
Q Consensus 70 ~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g 149 (204)
.++...+..+.+.+++++||+..++|+|+...+.+||++|++++++. + +.+.+++||++++|+|..|++.|.+
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-----g--~~~~l~~Gd~i~ip~g~~H~~~a~~ 106 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-----G--EKKELKAGDVIIIPPGVVHGLKAVE 106 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-----C--CceEecCCCEEEECCCCeeeeccCC
Confidence 44444455678899999999999999999448999999999999996 2 5999999999999999999999998
Q ss_pred CCCEEEEEEEcC
Q 048039 150 KVNAVAIAALNS 161 (204)
Q Consensus 150 ~~~a~~i~~~~s 161 (204)
+++..+|+++..
T Consensus 107 ~~~~~~l~v~~~ 118 (131)
T COG1917 107 DEPMVLLLVFPL 118 (131)
T ss_pred CCceeEEEEeee
Confidence 887677777654
No 12
>PRK11171 hypothetical protein; Provisional
Probab=99.36 E-value=2.4e-11 Score=103.57 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCCCCCCCcEEeccCCCCCCCCCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCC-CCcEEEEEEeCcEEE
Q 048039 35 DPKTAHADDFYFTGLDKQGNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHP-RASEIMTLLEGTLEV 113 (204)
Q Consensus 35 ~~~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~-~a~E~~yVl~G~~~~ 113 (204)
+.+.+++++.+++.+..- .+..++.+.. |. ....+.+.+++++||+....|.|. +.+|++||++|++++
T Consensus 27 ~~a~~~p~~~v~~~lp~~------~~~~~~~L~~---~~-~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v 96 (266)
T PRK11171 27 AYAVIPPDDIVTSVLPGW------ENTRAWVLAR---PG-LGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL 96 (266)
T ss_pred CeEEECCcCEEeecCCCC------CCeEEEEEeC---CC-CCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE
Confidence 345566677777754222 2233444332 22 234688999999999987767665 558999999999999
Q ss_pred EEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEc
Q 048039 114 GFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~ 160 (204)
.++ + +++.|++||+++||++..|.+.|.++++++++++..
T Consensus 97 ~~~-----g--~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 97 TLE-----G--KTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EEC-----C--EEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 985 3 599999999999999999999999999999999863
No 13
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.36 E-value=2.5e-11 Score=98.51 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=78.7
Q ss_pred EEEEeccccCCCCCceEEEEEEEECCCCC------CCCccCCCC--cEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcE
Q 048039 63 ATPVYVQQIPGLNTLGLSMVRVDFAPDGL------NPPHTHPRA--SEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDV 134 (204)
Q Consensus 63 ~~~~~~~~~P~l~~~g~s~~~~~i~pg~~------~ppH~H~~a--~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~ 134 (204)
+..+.. ..|......+.+...++.||.. .+.|+|+.. .|+.||++|++.+.+.+.+ ++.....+++||+
T Consensus 53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~--G~~~~~~v~pGd~ 129 (191)
T PRK04190 53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE--GEARWIEMEPGTV 129 (191)
T ss_pred EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC--CcEEEEEECCCCE
Confidence 444433 3334555578999999999996 567999753 5999999999999997654 3346899999999
Q ss_pred EEECCCCeEEEEeCCCCCEEEEEEEcCC
Q 048039 135 FVFPMGLLHYQRNVGKVNAVAIAALNSQ 162 (204)
Q Consensus 135 ~~~p~g~~H~~~N~g~~~a~~i~~~~s~ 162 (204)
++||+|..|...|.|++++++++++...
T Consensus 130 v~IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 130 VYVPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EEECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 9999999999999999999999988644
No 14
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.34 E-value=1e-11 Score=96.33 Aligned_cols=93 Identities=20% Similarity=0.140 Sum_probs=76.1
Q ss_pred cccCCCCCceEEEEEEEECCCCC-CCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCC--CeEEE
Q 048039 69 QQIPGLNTLGLSMVRVDFAPDGL-NPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMG--LLHYQ 145 (204)
Q Consensus 69 ~~~P~l~~~g~s~~~~~i~pg~~-~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g--~~H~~ 145 (204)
..+-+|+. +.+....++||+. ...|||...+|++|||+|++++.++ + ..+.|++||++-||+| ..|.+
T Consensus 34 G~~~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d-----~--~e~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 34 GDALGLKR--FGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED-----G--GETRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhhcChhh--cccceEEeCCCCccccccccccCceEEEEEcCceEEEEC-----C--eeEEecCCceeeccCCCcceeEE
Confidence 34556664 4455678899995 6899999999999999999999986 3 5899999999999999 89999
Q ss_pred EeCCCCCEEEEEEEcCCCCCceecc
Q 048039 146 RNVGKVNAVAIAALNSQNPGTSSIA 170 (204)
Q Consensus 146 ~N~g~~~a~~i~~~~s~~pg~~~~~ 170 (204)
.|.|+..+++|++-+...-....++
T Consensus 105 iN~s~~~~~yL~vG~r~~~d~i~YP 129 (161)
T COG3837 105 INRSDVILRYLEVGTREPDDIITYP 129 (161)
T ss_pred eecCCceEEEEEeccccccceeecC
Confidence 9999999999998765444444444
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.29 E-value=4.7e-11 Score=96.26 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=66.4
Q ss_pred ceEEEEEEEECCCCCC-CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEE
Q 048039 77 LGLSMVRVDFAPDGLN-PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVA 155 (204)
Q Consensus 77 ~g~s~~~~~i~pg~~~-ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~ 155 (204)
..+.+.+.+++||+.. +.|+|++ .|++||++|++++.++ + +.+.|++||+++||++.+|.+.|.+++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~~-~E~~~Vl~G~~~~~~~-----~--~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQG-EEIGTVLEGEIVLTIN-----G--QDYHLVAGQSYAINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred CeeEEEEEEccCCCCcccccccCC-cEEEEEEEeEEEEEEC-----C--EEEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence 3466777889999864 5677876 9999999999999985 3 6899999999999999999999999999999
Q ss_pred EEEEc
Q 048039 156 IAALN 160 (204)
Q Consensus 156 i~~~~ 160 (204)
+++..
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 99864
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.27 E-value=4.3e-11 Score=109.44 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=70.2
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
++.+.+++++||+....|+|....|++||++|++++.++ + +++.|.+||+++||+|.+|++.|.|++++++|+
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id-----g--~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~ 456 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID-----G--DIKLLGENESIYIPLGATHCLENPGKIPLDLIE 456 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC-----C--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 578899999999988778876678999999999999996 4 699999999999999999999999999999999
Q ss_pred EEcC
Q 048039 158 ALNS 161 (204)
Q Consensus 158 ~~~s 161 (204)
+...
T Consensus 457 V~~g 460 (478)
T PRK15460 457 VRSG 460 (478)
T ss_pred EEcC
Confidence 9754
No 17
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.27 E-value=4.7e-11 Score=109.13 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=71.2
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
.+.+.+++++||+..+.|+|+...|.+||++|++++.++ + +++.|++||++++|+|.+|.+.|.|++++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d-----g--~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG-----D--ETLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC-----C--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 578899999999998889888779999999999999986 4 689999999999999999999999999999999
Q ss_pred EEcCC
Q 048039 158 ALNSQ 162 (204)
Q Consensus 158 ~~~s~ 162 (204)
+...+
T Consensus 448 v~~~~ 452 (468)
T TIGR01479 448 VQSGS 452 (468)
T ss_pred EEcCC
Confidence 97643
No 18
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.4e-11 Score=88.80 Aligned_cols=84 Identities=24% Similarity=0.335 Sum_probs=73.9
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCce-eEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRH-FSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~-~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
++.+..++++||+....|.|..-+-.+||++|+...+++ +++ +..+.++||+|+||+|++|.-.|.+++++..+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G-----~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG-----NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec-----cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 677888999999999999998878889999999999998 454 46788999999999999999999999999999
Q ss_pred EEEcCCCCCc
Q 048039 157 AALNSQNPGT 166 (204)
Q Consensus 157 ~~~~s~~pg~ 166 (204)
.+.+..++..
T Consensus 120 IaRsDp~~~E 129 (142)
T COG4101 120 IARSDPNPQE 129 (142)
T ss_pred EEccCCCCCc
Confidence 8887666543
No 19
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.21 E-value=1.5e-10 Score=90.73 Aligned_cols=76 Identities=28% Similarity=0.294 Sum_probs=70.6
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
+..+.++++.||....+|.|....|.++|++|++.+.++ + ....+++||++++|+|..|++.|.|+.++.+|.
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~-----~--~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE 134 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD-----D--EEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE 134 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC-----C--EEEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence 577899999999999999998889999999999999985 3 699999999999999999999999999999998
Q ss_pred EEc
Q 048039 158 ALN 160 (204)
Q Consensus 158 ~~~ 160 (204)
+-.
T Consensus 135 Vq~ 137 (151)
T PF01050_consen 135 VQT 137 (151)
T ss_pred Eec
Confidence 854
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.20 E-value=3.5e-10 Score=96.11 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=66.9
Q ss_pred eEEEEEEEECCCCCC-CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 78 GLSMVRVDFAPDGLN-PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 78 g~s~~~~~i~pg~~~-ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
.+.+.+++++||+.. .+|+|++.+|++||++|++++.++ + +++.|++||.+++|++..|.+.|.++++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~-----g--~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l 129 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE-----G--ETHELREGGYAYLPPGSKWTLANAQAEDARFF 129 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC-----C--EEEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 578899999998764 456677768999999999999985 3 58999999999999999999999999999999
Q ss_pred EEEc
Q 048039 157 AALN 160 (204)
Q Consensus 157 ~~~~ 160 (204)
++-.
T Consensus 130 ~v~k 133 (260)
T TIGR03214 130 LYKK 133 (260)
T ss_pred EEEe
Confidence 8764
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.11 E-value=1.3e-09 Score=93.00 Aligned_cols=75 Identities=16% Similarity=0.010 Sum_probs=66.5
Q ss_pred eEEEEEEEECCCCCCCCc-cCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPH-THPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH-~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
.+.+.+++++||+..+.| +|. .+|.+||++|++++.++ + +.+.|++||+++++++.+|++.|.|+++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~-----~--~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl 254 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLN-----N--DWVEVEAGDFIWMRAYCPQACYAGGPGPFRYL 254 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEEC-----C--EEEEeCCCCEEEECCCCCEEEECCCCCcEEEE
Confidence 368899999999998885 555 59999999999999885 3 69999999999999999999999999999998
Q ss_pred EEEc
Q 048039 157 AALN 160 (204)
Q Consensus 157 ~~~~ 160 (204)
..=+
T Consensus 255 ~~k~ 258 (266)
T PRK11171 255 LYKD 258 (266)
T ss_pred EEcc
Confidence 7643
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.09 E-value=9e-10 Score=93.60 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=64.6
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
++.+.+++++||+..+.|.|...+|.+|||+|++.+.++ + +...+++||++++|++++|++.|.|+++.++|.
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~-----g--~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ 250 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLD-----N--NWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLL 250 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEEC-----C--EEEEecCCCEEEECCCCCEEEEecCCCcEEEEE
Confidence 567788999999999965444448999999999999885 3 699999999999999999999999999999885
Q ss_pred E
Q 048039 158 A 158 (204)
Q Consensus 158 ~ 158 (204)
-
T Consensus 251 y 251 (260)
T TIGR03214 251 Y 251 (260)
T ss_pred E
Confidence 3
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=99.00 E-value=1.2e-08 Score=78.73 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=59.6
Q ss_pred cCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCC--CCceeEEEeCCCcEEEECCCCeEEEEeC
Q 048039 71 IPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAP--DYRHFSKILNKGDVFVFPMGLLHYQRNV 148 (204)
Q Consensus 71 ~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~--~~~~~~~~L~~Gd~~~~p~g~~H~~~N~ 148 (204)
.-+++ .+.+.+-++.||...|.|.|.. +|+++|++|+++..+..... .++-+++.+.+++.+.||.+..|...|.
T Consensus 38 ~hGmk--evEVwlQTfAPG~~TPiHRHsC-EEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT 114 (167)
T PF02041_consen 38 LHGMK--EVEVWLQTFAPGSATPIHRHSC-EEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNT 114 (167)
T ss_dssp HH--S--SEEEEEEEE-TT-B--EEEESS--EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE--
T ss_pred hcCce--eeeEEeeeecCCCCCCCccccc-cEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecC
Confidence 34555 5688899999999999999986 99999999999999975431 1445789999999999999999999999
Q ss_pred C-CCCEEEEEEEcCCCCCceeccc
Q 048039 149 G-KVNAVAIAALNSQNPGTSSIAP 171 (204)
Q Consensus 149 g-~~~a~~i~~~~s~~pg~~~~~~ 171 (204)
+ .+++.++++++...--.+.+.+
T Consensus 115 ~e~eDlqvlViiSrpPvkvf~y~d 138 (167)
T PF02041_consen 115 NEHEDLQVLVIISRPPVKVFIYDD 138 (167)
T ss_dssp -SSS-EEEEEEEESSS--EEEESS
T ss_pred CCCcceEEEEEecCCCeEEEEecc
Confidence 9 4899999887644333333333
No 24
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.78 E-value=5e-08 Score=76.75 Aligned_cols=66 Identities=17% Similarity=0.341 Sum_probs=53.8
Q ss_pred CCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 87 APDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 87 ~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
.||....+|.|+. +|++|+++|++.+.+.+. ++.+...|++||++++|+|++|..... +.++.+.+
T Consensus 36 Gpn~R~d~H~~~t-dE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~flvP~gvpHsP~r~--~~t~~LvI 101 (159)
T TIGR03037 36 GPNARTDFHDDPG-EEFFYQLKGEMYLKVTEE---GKREDVPIREGDIFLLPPHVPHSPQRP--AGSIGLVI 101 (159)
T ss_pred CCCCCcccccCCC-ceEEEEEcceEEEEEEcC---CcEEEEEECCCCEEEeCCCCCcccccC--CCcEEEEE
Confidence 6777788999985 999999999999998763 344689999999999999999998764 33444444
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.76 E-value=5.4e-08 Score=77.69 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=56.3
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
+.=.||....+|+|+. +|++|+++|++.+.+.+. ++.+...|++||++++|+|++|..... +.++.+.+
T Consensus 39 vvgGpn~r~d~H~~~t-dE~FyqleG~~~l~v~d~---g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 39 VVGGPNARTDFHYDPG-EEFFYQLEGDMYLKVQED---GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEccCCcccccccCCC-ceEEEEECCeEEEEEEcC---CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 3337888899999986 999999999999999763 444689999999999999999998763 44555554
No 26
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.69 E-value=2.9e-07 Score=74.14 Aligned_cols=84 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred ceEEEEEEEECCCCC------CCCccCCC------CcEEEEEEeCcEEEEEEecCCCC----ceeEEEeCCCcEEEECCC
Q 048039 77 LGLSMVRVDFAPDGL------NPPHTHPR------ASEIMTLLEGTLEVGFIGTAPDY----RHFSKILNKGDVFVFPMG 140 (204)
Q Consensus 77 ~g~s~~~~~i~pg~~------~ppH~H~~------a~E~~yVl~G~~~~~~~~~~~~~----~~~~~~L~~Gd~~~~p~g 140 (204)
.++..-...+.||.+ ..=|+|+. ..|+.+|++|++.+.+-+.. + +.....+++||+++||++
T Consensus 48 ~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~--~~~~~~~~~v~~~~G~~v~IPp~ 125 (182)
T PF06560_consen 48 RNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE--GDDVGDVIAVEAKPGDVVYIPPG 125 (182)
T ss_dssp --EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT--S-----EEEEEE-TTEEEEE-TT
T ss_pred eeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC--CCcceeEEEEEeCCCCEEEECCC
Confidence 357777778888853 46799987 79999999999999998765 4 456789999999999999
Q ss_pred CeEEEEeCCCCCEEEEEEEcCC
Q 048039 141 LLHYQRNVGKVNAVAIAALNSQ 162 (204)
Q Consensus 141 ~~H~~~N~g~~~a~~i~~~~s~ 162 (204)
..|...|+|++++++.....+.
T Consensus 126 yaH~tIN~g~~~L~~~~~~~~~ 147 (182)
T PF06560_consen 126 YAHRTINTGDEPLVFAAWVPRD 147 (182)
T ss_dssp -EEEEEE-SSS-EEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEEEEecC
Confidence 9999999999999998887643
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.59 E-value=2e-07 Score=69.20 Aligned_cols=65 Identities=25% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEc
Q 048039 88 PDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 88 pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~ 160 (204)
++...++|+|+. -|++||++|++++.++ + ..+.+++||++++|+|.+|.+...++++...+++.-
T Consensus 12 ~~~~~~~h~h~~-~~i~~v~~G~~~~~~~-----~--~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHDF-YEIIYVLSGEGTLHID-----G--QEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT-S-EEEEEEEEE-EEEEET-----T--EEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECCC-EEEEEEeCCEEEEEEC-----C--EEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 445568899986 9999999999999885 3 699999999999999999999988776777776654
No 28
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.58 E-value=2.4e-07 Score=66.33 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=59.2
Q ss_pred CCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEEC
Q 048039 59 MGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFP 138 (204)
Q Consensus 59 ~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p 138 (204)
.|.++..+. ..+.- .+..+..++++||+..|.|.|+. .|.+|||+|++... + ..+.+||.++.|
T Consensus 8 ~Gv~~~~L~--~~~~~--~g~~~~L~r~~pG~~~p~H~H~g-~ee~~VLeG~~~d~-------~----~~~~~G~~~~~p 71 (91)
T PF12973_consen 8 PGVSVKPLH--RDEGE--TGERVSLLRLEPGASLPRHRHPG-GEEILVLEGELSDG-------D----GRYGAGDWLRLP 71 (91)
T ss_dssp TTEEEEEEE--ECSSS--TTEEEEEEEE-TTEEEEEEEESS--EEEEEEECEEEET-------T----CEEETTEEEEE-
T ss_pred CCEEEEEec--cCCCc--ccCEEEEEEECCCCCcCccCCCC-cEEEEEEEEEEEEC-------C----ccCCCCeEEEeC
Confidence 455666655 33321 25678889999999999999987 88889999999842 1 246999999999
Q ss_pred CCCeEEEEeCCCCCEEEEE
Q 048039 139 MGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 139 ~g~~H~~~N~g~~~a~~i~ 157 (204)
+|..|.... ++.|.++.
T Consensus 72 ~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 72 PGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp TTEEEEEEE--SSCEEEEE
T ss_pred CCCccccCc--CCCEEEEE
Confidence 999999884 56677664
No 29
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.50 E-value=4.1e-07 Score=75.32 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=62.5
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
..+..++++||+..|.|.|.+ .|+.+||+|++. + +...+.+||++..|.|..|...+.++++|+.+++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G-~E~tlVLeG~f~----d-------e~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v 194 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKG-FELTLVLHGAFS----D-------ETGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV 194 (215)
T ss_pred cEEEEEEECCCCccCCCcCCC-cEEEEEEEEEEE----c-------CCCccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence 356788999999999999976 999999999963 2 1456899999999999999999998899999999
Q ss_pred EcCC
Q 048039 159 LNSQ 162 (204)
Q Consensus 159 ~~s~ 162 (204)
++..
T Consensus 195 ~dap 198 (215)
T TIGR02451 195 LDAP 198 (215)
T ss_pred ecCC
Confidence 7754
No 30
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.48 E-value=2.2e-06 Score=71.07 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=51.7
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
.|+...+++.. ... +||....|+.||++|++++.+. + +++.+++||+++||+|..|.+...+ .++++.
T Consensus 156 ~m~aGf~~~~~-~sf--~wtl~~dEi~YVLEGe~~l~Id-----G--~t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 156 SMAAGFMQWEN-AFF--PWTLNYDEIDMVLEGELHVRHE-----G--ETMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred ceeeEEEEEec-Ccc--ceeccceEEEEEEEeEEEEEEC-----C--EEEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 34555555554 333 3555569999999999999995 4 6999999999999999996665543 666665
Q ss_pred EE
Q 048039 158 AL 159 (204)
Q Consensus 158 ~~ 159 (204)
+.
T Consensus 224 V~ 225 (233)
T PRK15457 224 VA 225 (233)
T ss_pred EE
Confidence 54
No 31
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.45 E-value=9.7e-07 Score=76.38 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=50.9
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCC
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~ 150 (204)
...+|..+.++|||.. .|+.|+++|++.+.+. + +.+.+++||+++++++.+|.+...++
T Consensus 31 ~~~~~~~m~~~HwH~e-~Ei~yv~~G~~~~~i~-----g--~~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 31 EFRPPHIMPTSHWHGQ-VEVNVPFDGDVEYLIN-----N--EKVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EeeCCCCCCCCCcccc-EEEEEecCCcEEEEEC-----C--EEEEEcCCcEEEEecCCcccccccCC
Confidence 4456778899999987 9999999999999885 4 69999999999999999998765444
No 32
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.40 E-value=3.6e-06 Score=59.73 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=54.3
Q ss_pred eEEEEEEEECCCCCC-CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 78 GLSMVRVDFAPDGLN-PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 78 g~s~~~~~i~pg~~~-ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
.++...++|+||+.- +.+.+.. .-++||++|.+++.+. + .+..+.+|+++++|+|-.-.+.|.++++++++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~-~~vF~V~~G~v~Vti~-----~--~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDN-TMVFYVIKGKVEVTIH-----E--TSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SE-EEEEEEEESEEEEEET-----T--EEEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred CceeEEEEeCCCCccCCcccCCc-EEEEEEEeCEEEEEEc-----C--cEEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence 356778999999975 4556654 8889999999999995 2 58999999999999999999999999999987
Q ss_pred EE
Q 048039 157 AA 158 (204)
Q Consensus 157 ~~ 158 (204)
-+
T Consensus 83 F~ 84 (85)
T PF11699_consen 83 FV 84 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 33
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.33 E-value=4.9e-06 Score=65.64 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=50.2
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCc
Q 048039 92 NPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGT 166 (204)
Q Consensus 92 ~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~ 166 (204)
...|.|.. .|+-||++|++.+.+.+.+ +......+++||.+++|+|+.|++.-......+++=.|. ..||+
T Consensus 85 ~~EH~H~d-eEvR~i~~G~g~Fdvr~~~--~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~-~~~gW 155 (157)
T PF03079_consen 85 FEEHTHED-EEVRYIVDGSGYFDVRDGD--DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK-DEPGW 155 (157)
T ss_dssp CS-EEESS--EEEEEEECEEEEEEE-TT--CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES-SCGGE
T ss_pred heeEecCh-heEEEEeCcEEEEEEEcCC--CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec-CCCCc
Confidence 46899987 9999999999999998654 443457899999999999999999865455566665544 45554
No 34
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.32 E-value=9e-06 Score=61.26 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEE
Q 048039 75 NTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAV 154 (204)
Q Consensus 75 ~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~ 154 (204)
.+.|+|+-...+.+|.....|+-.. .|.+|+++|++++...+. + +.+.++||.+....+...|.++.. ++++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~YknH-lEAvyci~G~Gev~~~~~---G--~~~~i~pGt~YaLd~hD~H~lra~--~dm~ 102 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYKNH-LEAVYCIEGEGEVEDLDT---G--EVHPIKPGTMYALDKHDRHYLRAK--TDMR 102 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEecCc-eEEEEEEeceEEEEEccC---C--cEEEcCCCeEEecCCCccEEEEec--CCEE
Confidence 4558999999999999999998766 999999999999988743 3 699999999999999999999865 4999
Q ss_pred EEEEEcCCCCCc
Q 048039 155 AIAALNSQNPGT 166 (204)
Q Consensus 155 ~i~~~~s~~pg~ 166 (204)
++++|+.+--|.
T Consensus 103 ~vCVFnPpltG~ 114 (126)
T PF06339_consen 103 LVCVFNPPLTGR 114 (126)
T ss_pred EEEEcCCCCcCc
Confidence 999998664443
No 35
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.22 E-value=9.5e-06 Score=71.26 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=64.0
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
+....-.+.||...++|.|.. .-+.+|++|+..+..++ + +...+++||+|+.|++..|...|.|++++..+..
T Consensus 81 l~a~~q~l~pGe~~~~HRht~-sAl~~vveG~G~~t~V~----g--~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~ 153 (335)
T TIGR02272 81 LYAGLQLILPGEVAPSHRHTQ-SALRFIVEGKGAFTAVD----G--ERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDG 153 (335)
T ss_pred HHhhhEEeCCCCCCCcccccc-ceEEEEEEcCceEEEEC----C--EEEeeeCCCEEEeCCCeeEecccCCCCcEEEEec
Confidence 445556789999999999986 89999999999766653 4 6999999999999999999999999999777666
Q ss_pred Ec
Q 048039 159 LN 160 (204)
Q Consensus 159 ~~ 160 (204)
++
T Consensus 154 lD 155 (335)
T TIGR02272 154 LD 155 (335)
T ss_pred CC
Confidence 54
No 36
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.21 E-value=1.5e-05 Score=62.98 Aligned_cols=73 Identities=19% Similarity=0.271 Sum_probs=59.6
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCceec
Q 048039 93 PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSI 169 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~ 169 (204)
.-|.|.. .|+-|++.|.+.+.+...+ ++.....+.+||.+.+|+|+-||+.-..+-..+++=.| ...+|++-+
T Consensus 89 ~EH~H~d-~EvRy~vaG~GiF~v~~~d--~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF-~~~~gWVa~ 161 (181)
T COG1791 89 QEHLHTD-DEVRYFVAGEGIFDVHSPD--GKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLF-TEPEGWVAI 161 (181)
T ss_pred HHhccCC-ceEEEEEecceEEEEECCC--CcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEe-eCCCCceee
Confidence 4699987 9999999999999998765 57778889999999999999999976555556665555 477888644
No 37
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.20 E-value=5.1e-06 Score=70.12 Aligned_cols=105 Identities=28% Similarity=0.355 Sum_probs=57.9
Q ss_pred CCCCCCcEEeccCCCCCCCCCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEe
Q 048039 38 TAHADDFYFTGLDKQGNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIG 117 (204)
Q Consensus 38 ~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~ 117 (204)
.+.++|..|.-++-.. ...+.....+. ..|.- .|.+..++++++|-..|||+|.. .+-+|||+|++..+ +
T Consensus 2 ~v~~~d~~w~~~~p~~---~~~~~~~~~L~--gd~~~--~g~~~~~vkf~~g~~~pph~H~~-~~~~~Vi~G~~~~~--~ 71 (251)
T PF14499_consen 2 VVHADDVKWGPLNPAR---GDKGPGAAVLW--GDPTK--DGPSGMRVKFPAGFSSPPHIHNA-DYRGTVISGELHNG--D 71 (251)
T ss_dssp GGGS--EEEE--TTS----TTS--EEEEEE--EE--T--TS-EEEEEEE-TT-EE--BEESS--EEEEEEESEEEET--T
T ss_pred ccchhhccccccCCCC---CCCCcceeeee--cCccc--CCcceEEEEcCCCccCCCcceee-eEEEEEEEeEEEcC--C
Confidence 3567888888442211 22344444444 34432 26788999999999999999985 99999999987763 2
Q ss_pred cCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 118 TAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 118 ~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
.+....-|.+|..++.|+|..|.....+.+.+.++
T Consensus 72 ----~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 72 ----PKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp ----EE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred ----CcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 23345779999999999999999876665555554
No 38
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.19 E-value=1.5e-05 Score=67.58 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=45.0
Q ss_pred CCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeC
Q 048039 89 DGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNV 148 (204)
Q Consensus 89 g~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~ 148 (204)
+...++|||.. .|++||++|++++.+. + ..+.+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~~-~ei~~v~~G~~~~~i~-----~--~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHDY-YEFTLVLTGRYYQEIN-----G--KRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccccc-EEEEEEEeceEEEEEC-----C--EEEEECCCcEEEeCCCCccceeee
Confidence 44568999986 9999999999999985 4 589999999999999999976543
No 39
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.19 E-value=6.9e-06 Score=70.19 Aligned_cols=55 Identities=24% Similarity=0.174 Sum_probs=47.3
Q ss_pred CCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCC
Q 048039 87 APDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149 (204)
Q Consensus 87 ~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g 149 (204)
.+....++|||+. .|++||++|++++.++ + ..+.+++||++++|+|.+|.+...+
T Consensus 26 ~~~~~~~~H~H~~-~ei~~i~~G~~~~~i~-----~--~~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTHQF-CEIVIVWRGNGLHVLN-----D--HPYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCCccccccc-eeEEEEecCceEEEEC-----C--eeeeecCCeEEEEcCCCcccccccC
Confidence 4444577999986 9999999999999985 4 6999999999999999999987543
No 40
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.08 E-value=1.8e-05 Score=68.65 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=47.8
Q ss_pred CCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCC
Q 048039 87 APDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 87 ~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~ 150 (204)
.|....++|||+. .|++||++|++.+.++ + ..+.+++||+++++++.+|.+....+
T Consensus 56 ~~~~~~~~H~H~~-~el~~v~~G~g~~~v~-----~--~~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTHDF-CELVIVWRGNGLHVLN-----D--RPYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCccccce-EEEEEEEcCeEEEEEC-----C--EEEeecCCeEEEECCCCeecccccCC
Confidence 3444578999986 9999999999999885 3 69999999999999999999876444
No 41
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.04 E-value=1.8e-05 Score=67.25 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=49.3
Q ss_pred CCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 89 DGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 89 g~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
+...++|||.+.-|++|+++|++.+.++ + ..+.+++||++++|+|..|.+....+....++
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~-----~--~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD-----E--HEYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC-----C--EEEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 4567999997448999999999998885 3 58999999999999999999876544443333
No 42
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.04 E-value=1.2e-05 Score=68.81 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=73.8
Q ss_pred EEEeccccCCCCCce-E----EEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEEC
Q 048039 64 TPVYVQQIPGLNTLG-L----SMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFP 138 (204)
Q Consensus 64 ~~~~~~~~P~l~~~g-~----s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p 138 (204)
+.+-..+.|+++++. + ....--|.||...|.|.|.. .-+-+|++|+.-+..++ + +...+++||.+..|
T Consensus 72 RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsq-sAlRFvveG~Ga~T~Vd----G--er~~M~~GDfilTP 144 (351)
T COG3435 72 RRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQ-SALRFVVEGKGAYTVVD----G--ERTPMEAGDFILTP 144 (351)
T ss_pred eEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccc-cceEEEEeccceeEeec----C--ceeeccCCCEEEcc
Confidence 333445778887663 1 12333568999999999986 89999999999999885 4 68999999999999
Q ss_pred CCCeEEEEeCCCCCEEEEEEEc
Q 048039 139 MGLLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 139 ~g~~H~~~N~g~~~a~~i~~~~ 160 (204)
++..|..-|.|++|+.++-.++
T Consensus 145 ~w~wHdHgn~g~eP~iWlDgLD 166 (351)
T COG3435 145 AWTWHDHGNEGTEPCIWLDGLD 166 (351)
T ss_pred CceeccCCCCCCCceEEEcccc
Confidence 9999999999999999987765
No 43
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.03 E-value=4.8e-05 Score=62.53 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=64.7
Q ss_pred EEEEEEEECCCC-CCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 79 LSMVRVDFAPDG-LNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 79 ~s~~~~~i~pg~-~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
++-..+++.|++ .-.+-.-++++-++||++|++++.+. + +++.|++|+..++|+|..|.++|...+++++.+
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~-----G--~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw 133 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE-----G--KTHALREGGYAYLPPGSGWTLRNAQKEDSRFHW 133 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc-----C--eEEEeccCCeEEeCCCCcceEeeccCCceEEEE
Confidence 344668887776 56677778889999999999999986 4 699999999999999999999999999999988
Q ss_pred EEc
Q 048039 158 ALN 160 (204)
Q Consensus 158 ~~~ 160 (204)
+--
T Consensus 134 ~rk 136 (264)
T COG3257 134 IRK 136 (264)
T ss_pred Eee
Confidence 753
No 44
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.00 E-value=3.6e-05 Score=58.92 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=53.6
Q ss_pred CceEEEEecc-ccCCCCCceEEEEEE-EECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCC-cEEE
Q 048039 60 GSKATPVYVQ-QIPGLNTLGLSMVRV-DFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKG-DVFV 136 (204)
Q Consensus 60 g~~~~~~~~~-~~P~l~~~g~s~~~~-~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~G-d~~~ 136 (204)
.+.++.+... ..|. .- -.+..+ ..++|....+|.|....|+++|++|++++.+.+.. ...++.|... ..++
T Consensus 15 RG~L~~~e~~~~ipf-~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~---~~~~~~L~~~~~~L~ 88 (131)
T PF05523_consen 15 RGSLSVIERFDDIPF-EI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR---EEEEFILDEPNKGLY 88 (131)
T ss_dssp TEEEEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS----EEEEEE--TTEEEE
T ss_pred CCcEEEEeccCCCCC-Cc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCC---CcEEEEECCCCeEEE
Confidence 3456665544 2443 11 123334 34455558999999999999999999999987643 3367888665 5999
Q ss_pred ECCCCeEEEEeCCCCCEEEEEEEcCC
Q 048039 137 FPMGLLHYQRNVGKVNAVAIAALNSQ 162 (204)
Q Consensus 137 ~p~g~~H~~~N~g~~~a~~i~~~~s~ 162 (204)
+|+|+.|.+.|.++. +++++. .+.
T Consensus 89 Ippg~w~~~~~~s~~-svlLv~-as~ 112 (131)
T PF05523_consen 89 IPPGVWHGIKNFSED-SVLLVL-ASE 112 (131)
T ss_dssp E-TT-EEEEE---TT--EEEEE-ESS
T ss_pred ECCchhhHhhccCCC-cEEEEE-cCC
Confidence 999999999998777 666654 443
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.97 E-value=3.8e-05 Score=65.18 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=47.5
Q ss_pred CCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCC
Q 048039 87 APDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 87 ~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~ 150 (204)
.|....++|||.. .|++||++|++++.+. + ..+.+++||++++|++.+|.+...++
T Consensus 26 ~~~~~~~~H~h~~-~~l~~v~~G~~~~~i~-----~--~~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHEF-CELVMVWRGNGLHVLN-----E--RPYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccce-EEEEEEecCcEEEEEC-----C--EEEeecCCcEEEECCCCcccccccCC
Confidence 4555578999985 9999999999999985 4 58999999999999999999865443
No 46
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.95 E-value=0.0001 Score=57.17 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=50.9
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcC
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNS 161 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s 161 (204)
+.+.=.|....-.|.-+. +|++|.++|.+.+.+.+. ++.+...+++||++..|++++|+-.-.. ..+-+++-..
T Consensus 36 VmvVGGPN~R~DyHine~-eE~FyQ~kG~m~Lkv~e~---g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~ 109 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINET-EEFFYQLKGDMCLKVVED---GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERK 109 (151)
T ss_dssp EEEEESSB--SSEEE-SS--EEEEEEES-EEEEEEET---TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE-
T ss_pred EEEEcCCCCCCccccCCc-ceEEEEEeCcEEEEEEeC---CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEec
Confidence 445567888888999986 999999999999999875 5668999999999999999999976653 4455555443
Q ss_pred CCCCc
Q 048039 162 QNPGT 166 (204)
Q Consensus 162 ~~pg~ 166 (204)
..+|.
T Consensus 110 R~~~~ 114 (151)
T PF06052_consen 110 RPEGE 114 (151)
T ss_dssp --TTS
T ss_pred cCCCC
Confidence 33443
No 47
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.93 E-value=2.5e-05 Score=65.92 Aligned_cols=53 Identities=25% Similarity=0.172 Sum_probs=46.2
Q ss_pred CCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeC
Q 048039 88 PDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNV 148 (204)
Q Consensus 88 pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~ 148 (204)
+....++|||.. .|++||++|++++.+. + ..+.+++||++++|++..|.+...
T Consensus 24 ~~~~~~~H~H~~-~ei~~v~~G~~~~~i~-----~--~~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHHDF-HEIVIVEHGTGIHVFN-----G--QPYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccccCc-eeEEEEecCceeeEec-----C--CcccccCCcEEEECCCccchhhhc
Confidence 445678999986 9999999999999986 3 489999999999999999987654
No 48
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.90 E-value=2.3e-05 Score=59.93 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=52.8
Q ss_pred CCCCC-CccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEc
Q 048039 89 DGLNP-PHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 89 g~~~p-pH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~ 160 (204)
|++.+ -|+|.++.|++.|++|+..+.++... + .+..+.+||++++|+|+-|.-. .+.-+..++..+.
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~--G--~el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaYp 119 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD--G--QELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAYP 119 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCC--C--ceeeecCCCEEEEecCcccccc-cCCCCeEEEcccC
Confidence 44433 47999999999999999999998754 3 6999999999999999999753 3445566665553
No 49
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.80 E-value=5.2e-05 Score=52.28 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=42.0
Q ss_pred EEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEe
Q 048039 80 SMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRN 147 (204)
Q Consensus 80 s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N 147 (204)
+....+..||. .+.++. ..|++|||+|++++...+ + ...++++||.+++|+|..-.+.-
T Consensus 8 ~~g~w~~~pg~-~~~~~~--~~E~~~vleG~v~it~~~----G--~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 8 SAGVWECTPGK-FPWPYP--EDEFFYVLEGEVTITDED----G--ETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEEEEECEE-EEEEES--SEEEEEEEEEEEEEEETT----T--EEEEEETTEEEEE-TTEEEEEEE
T ss_pred EEEEEEECCce-eEeeCC--CCEEEEEEEeEEEEEECC----C--CEEEEcCCcEEEECCCCEEEEEE
Confidence 34444556654 223333 399999999999998642 4 68999999999999998766643
No 50
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.72 E-value=0.0001 Score=58.05 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=48.3
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCC
Q 048039 92 NPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 92 ~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~ 150 (204)
...|.|.. +|+-||++|++.+-+.+.+ ++....-++.||.+++|+|+-|++.-..+
T Consensus 86 fEEhlh~d-eeiR~il~GtgYfDVrd~d--d~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 86 FEEHLHED-EEIRYILEGTGYFDVRDKD--DQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHhcCch-hheEEEeecceEEeeccCC--CCEEEEEEecCCEEEecCcceeeeecCch
Confidence 36899998 9999999999999998765 56667888999999999999999975433
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.62 E-value=0.00033 Score=61.63 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=54.5
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
..+++|....+|.|.. ..+++|++|+++..++ + +....++||+|++|+...|...|. +++.++++
T Consensus 255 q~L~~G~~t~~~r~T~-s~Vf~VieG~G~s~ig-----~--~~~~W~~gD~f~vPsW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 255 QLLPKGFRTATYRSTD-ATVFCVVEGRGQVRIG-----D--AVFRFSPKDVFVVPSWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred hccCCCCCCCCccccc-cEEEEEEeCeEEEEEC-----C--EEEEecCCCEEEECCCCcEecccC--CCeEEEEe
Confidence 5678888999999976 9999999999999995 3 589999999999999988887764 45665544
No 52
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.57 E-value=0.0014 Score=51.03 Aligned_cols=69 Identities=25% Similarity=0.190 Sum_probs=52.1
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
.+++-..++.+ ...+|-- .-+|+-|||+|++.+... + ++...++||++++|.|.---+.-+|. ++++-
T Consensus 99 ~l~aG~m~~~~-~tf~wtl--~yDe~d~VlEGrL~V~~~-----g--~tv~a~aGDvifiPKgssIefst~ge--a~fly 166 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWTL--NYDEIDYVLEGRLHVRID-----G--RTVIAGAGDVIFIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred ccccceeeecc-ccCccee--cccceeEEEeeeEEEEEc-----C--CeEecCCCcEEEecCCCeEEEeccce--EEEEE
Confidence 45566667777 4455443 348999999999999886 4 48999999999999999888776554 66554
Q ss_pred E
Q 048039 158 A 158 (204)
Q Consensus 158 ~ 158 (204)
+
T Consensus 167 v 167 (176)
T COG4766 167 V 167 (176)
T ss_pred E
Confidence 4
No 53
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.52 E-value=0.00018 Score=56.33 Aligned_cols=68 Identities=24% Similarity=0.128 Sum_probs=45.7
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
++.-.++++.. +.-|.-.-.|+.|||+|++++... + +.+..++||+++||+|.--.+..+ ..++++-+
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~-----G--~~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID-----G--QTVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET-----T--EEEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC-----C--EEEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 34444455542 345665669999999999999853 4 699999999999999998777644 34555544
No 54
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.21 E-value=0.0076 Score=48.28 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=58.1
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCC--C----ceeEEEeCCCcEEEECCCCeEEEEeCC-C
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPD--Y----RHFSKILNKGDVFVFPMGLLHYQRNVG-K 150 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~--~----~~~~~~L~~Gd~~~~p~g~~H~~~N~g-~ 150 (204)
.+++..+...||...+.|=|.++.=++.|++|+++-..-...++ . ......+..|...+++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 46788899999999999999876778999999988765443321 0 012445778888888999999999987 8
Q ss_pred CCEEEEEEEcCC
Q 048039 151 VNAVAIAALNSQ 162 (204)
Q Consensus 151 ~~a~~i~~~~s~ 162 (204)
++++-|=+++.+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888888777654
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.13 E-value=0.0014 Score=49.17 Aligned_cols=49 Identities=29% Similarity=0.294 Sum_probs=40.0
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEe
Q 048039 93 PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRN 147 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N 147 (204)
.++++-...|++++|+|++++.-.+ + +...+++||+++||+|..=.+.-
T Consensus 56 ~~r~~y~~~E~chil~G~v~~T~d~----G--e~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 56 KFRVTYDEDEFCHILEGRVEVTPDG----G--EPVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred cceEEcccceEEEEEeeEEEEECCC----C--eEEEEcCCCEEEECCCCeEEEEE
Confidence 3566655699999999999987642 3 79999999999999999876654
No 56
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.93 E-value=0.0036 Score=53.98 Aligned_cols=65 Identities=25% Similarity=0.176 Sum_probs=57.0
Q ss_pred EECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 85 DFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 85 ~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
-++||-...+|.|.+ .-+.-|.+|+.+..++ + +.+...+||+|++|.-..|...|- .+++.++++
T Consensus 267 lL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig-----~--~rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 267 LLPPGFHGKAHRHTD-STIYHVVEGSGYTIIG-----G--ERFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred hcCCcccCCceeccC-CEEEEEEecceeEEEC-----C--EEeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 467888889999987 8899999999999986 4 699999999999999999999885 788888765
No 57
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.79 E-value=0.0014 Score=55.49 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEE
Q 048039 57 NPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFV 136 (204)
Q Consensus 57 ~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~ 136 (204)
...|..++.++- -|. +..+.-..+.++.|.....|+|.. .|-.|||+|++.++... ......|.+|..+.
T Consensus 153 ~~~g~~~a~Lwg--d~~--~g~~~gll~kLPagf~g~i~~h~~-~eraVvI~G~~~~~~~~-----~~~~~~L~~GSYf~ 222 (251)
T PF14499_consen 153 PPPGAQIAFLWG--DPN--TGQYTGLLLKLPAGFTGRIHTHAS-NERAVVISGELDYQSYG-----ASNFGTLDPGSYFG 222 (251)
T ss_dssp TT-SEEEEEEEE---TT--S-EE-EEEEE-SSEE--SEEE--S--EEEEEEEEEEEETTEE-----EETTEEEEE-TT-E
T ss_pred CCCcceEEEEec--CCC--CCceeeEEEEcCCCCcCceeccCC-ceEEEEEEeEEEEeecc-----cCCCccccCCcccc
Confidence 456777777663 332 224556778888888899999987 99999999999997643 12479999999999
Q ss_pred ECCCCeEEEEeCCCCCEEEEEEEcC
Q 048039 137 FPMGLLHYQRNVGKVNAVAIAALNS 161 (204)
Q Consensus 137 ~p~g~~H~~~N~g~~~a~~i~~~~s 161 (204)
-|.+..|... .++++++++.-.+.
T Consensus 223 s~~~~~H~~~-~~e~~~vlyIRtdG 246 (251)
T PF14499_consen 223 SPGHITHGIF-ITEDECVLYIRTDG 246 (251)
T ss_dssp E--E-------EESS-EEEEEEESS
T ss_pred cCCccccccc-ccCCCEEEEEEECC
Confidence 9999999998 77888888876543
No 58
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.60 E-value=0.018 Score=46.13 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=55.2
Q ss_pred CCCCCCCccCCCC-cEEEEEEeCcEEEEEEecCCC----CceeEEEeCCC--cEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 88 PDGLNPPHTHPRA-SEIMTLLEGTLEVGFIGTAPD----YRHFSKILNKG--DVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 88 pg~~~ppH~H~~a-~E~~yVl~G~~~~~~~~~~~~----~~~~~~~L~~G--d~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
+|-+..+|+|..- .+++.|++|++....+|-..+ ++.....|.+- ..+++|+|..|-+.+.+++..+++.
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~ 130 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK 130 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence 8888899999776 899999999999888873311 23456677665 7999999999999999988744443
No 59
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.48 E-value=0.062 Score=43.18 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=54.9
Q ss_pred CCCCCCCCccCC--CCcEEEEEEeCcEEEEEEecCCC----CceeEEEeCC--CcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 87 APDGLNPPHTHP--RASEIMTLLEGTLEVGFIGTAPD----YRHFSKILNK--GDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 87 ~pg~~~ppH~H~--~a~E~~yVl~G~~~~~~~~~~~~----~~~~~~~L~~--Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
.+|.+..+|.|. ....+++|++|++...++|--.+ ++.....|.+ +..++||+|..|.+.+.+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 567778899983 35899999999999988874321 3456778877 56999999999999998766 444433
Q ss_pred Ec
Q 048039 159 LN 160 (204)
Q Consensus 159 ~~ 160 (204)
.+
T Consensus 131 ~~ 132 (176)
T TIGR01221 131 CT 132 (176)
T ss_pred CC
Confidence 33
No 60
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.47 E-value=0.05 Score=49.36 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=54.1
Q ss_pred CCCCCcEEeccCCC--CCCCCCCCceEEEEeccccCCCCCceEEEEEEEECCCCC-CCCccCCCCcEEEEEEeCcEEEEE
Q 048039 39 AHADDFYFTGLDKQ--GNFSNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGL-NPPHTHPRASEIMTLLEGTLEVGF 115 (204)
Q Consensus 39 ~~~~df~~~~~~~~--~~~~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~-~ppH~H~~a~E~~yVl~G~~~~~~ 115 (204)
.++..+.|.-+..+ .++.--.| +..+.....+..+. |+.+...... ..+ ...-.+.+++|++++-+|++++..
T Consensus 86 ~~p~~lrw~p~~~p~~~~~dfvdg--l~ti~g~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~T 161 (424)
T PF04209_consen 86 PTPNQLRWDPFPIPSDEPTDFVDG--LRTIAGAGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLET 161 (424)
T ss_dssp ---S-EEE-S----TT----TTTT--EEEEEEECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEE
T ss_pred CCccccccCCCCCCCcCCCCcccc--ccccccCccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEe
Confidence 36777778776555 22222223 33344445565442 4544333222 223 233345567999999999999986
Q ss_pred EecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 116 IGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 116 ~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
. .-...+++||.++||+|+.+++.-. ++++.+.+
T Consensus 162 e-------~G~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 162 E-------FGRLDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp T-------TEEEEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred c-------CeeEEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 3 2378899999999999999998766 55555544
No 61
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=96.30 E-value=0.04 Score=45.59 Aligned_cols=73 Identities=16% Similarity=0.058 Sum_probs=59.3
Q ss_pred ceEEEEEEEECCCCCCCC-ccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEE
Q 048039 77 LGLSMVRVDFAPDGLNPP-HTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVA 155 (204)
Q Consensus 77 ~g~s~~~~~i~pg~~~pp-H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~ 155 (204)
-++-+..++++||+..|. -+|-- +-=+|||+|+..+.+. + ....+++||.+..-+-.+.+....|....+.
T Consensus 180 ~Dmhv~ivsFePGa~ip~aEtHvm-EHGlyvLeGk~vYrLn-----~--dwv~V~aGD~mwm~A~cpQacyagG~g~frY 251 (264)
T COG3257 180 FDMHVHIVSFEPGASIPYAETHVM-EHGLYVLEGKGVYRLN-----N--NWVPVEAGDYIWMGAYCPQACYAGGRGAFRY 251 (264)
T ss_pred cceEEEEEEecCCcccchhhhhhh-hcceEEEecceEEeec-----C--ceEEeecccEEEeeccChhhhccCCCCceEE
Confidence 367888899999998874 35543 5569999999999985 3 4899999999999999999988888776666
Q ss_pred EE
Q 048039 156 IA 157 (204)
Q Consensus 156 i~ 157 (204)
|.
T Consensus 252 Ll 253 (264)
T COG3257 252 LL 253 (264)
T ss_pred EE
Confidence 54
No 62
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=96.14 E-value=0.026 Score=45.96 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=68.8
Q ss_pred CCCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEE
Q 048039 56 SNPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVF 135 (204)
Q Consensus 56 ~~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~ 135 (204)
+.-.|.++..+....-+ ...++++.+.||...|-|+|-+ .|...|++|...- + .-.+.+||+.
T Consensus 110 W~~~G~rv~~v~l~~dd-----s~~V~llki~~g~s~P~HtH~G-~E~t~vl~G~~sd----e-------~G~y~vgD~~ 172 (216)
T COG3806 110 WLGPGGRVEPVRLPTDD-----SRRVALLKIEPGRSFPDHTHVG-IERTAVLEGAFSD----E-------NGEYLVGDFT 172 (216)
T ss_pred eecCCcceeecccCCCC-----CceeEEEEeccCcccccccccc-eEEEEEEeecccc----C-------CCccccCcee
Confidence 44556665555433322 4679999999999999999987 9999999997652 2 2367899999
Q ss_pred EECCCCeEEEEeCCCCCEEEEEEEcCC
Q 048039 136 VFPMGLLHYQRNVGKVNAVAIAALNSQ 162 (204)
Q Consensus 136 ~~p~g~~H~~~N~g~~~a~~i~~~~s~ 162 (204)
.-+.++-|.-.-..+.+|..++++..+
T Consensus 173 ~~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 173 LADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred ecCCccccccccCCCCCceEEEEcCCC
Confidence 999999998766677888888887644
No 63
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=95.98 E-value=0.057 Score=43.38 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=51.8
Q ss_pred CCCCCCCCccCCCC---cEEEEEEeCcEEEEEEecCCC----CceeEEEeCCCc--EEEECCCCeEEEEeCCCCCEEEE
Q 048039 87 APDGLNPPHTHPRA---SEIMTLLEGTLEVGFIGTAPD----YRHFSKILNKGD--VFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 87 ~pg~~~ppH~H~~a---~E~~yVl~G~~~~~~~~~~~~----~~~~~~~L~~Gd--~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
.+|.+..+|.|... ..++.|++|++...++|--.+ ++.....|.+++ .++||+|+.|.+.+.+++...++
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY 129 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence 45777889998663 589999999999988873211 455788887776 79999999999999876633333
No 64
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.88 E-value=0.037 Score=47.01 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=39.1
Q ss_pred CccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCC
Q 048039 94 PHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149 (204)
Q Consensus 94 pH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g 149 (204)
+|-+.. .++.++++|++.+.++ + ..+.+++||++++|+|.+|.+....
T Consensus 44 ~~~~~~-~~i~~~~~G~~~~~~~-----~--~~~~~~~g~~i~i~p~~~h~~~~~~ 91 (290)
T PRK10572 44 PLGMKG-YILNLTIRGQGVIFNG-----G--RAFVCRPGDLLLFPPGEIHHYGRHP 91 (290)
T ss_pred CCCccc-eEEEEEEeccEEEecC-----C--eeEecCCCCEEEECCCCceeeccCC
Confidence 344443 7899999999999764 3 5899999999999999999876543
No 65
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.80 E-value=0.063 Score=44.50 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=46.5
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEe-CcEEEEEEecCC--------------CCc------eeEEEeCCCcEEEECCC
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLE-GTLEVGFIGTAP--------------DYR------HFSKILNKGDVFVFPMG 140 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~-G~~~~~~~~~~~--------------~~~------~~~~~L~~Gd~~~~p~g 140 (204)
..+.+.+|+..|+|.|..-.|=++.-- |++.+.+-.+.. ++. .....|.||+++.+++|
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 346678999999999987677666665 577666654331 111 13678999999999999
Q ss_pred CeEEEEeCCCCCEEEEEEEcC
Q 048039 141 LLHYQRNVGKVNAVAIAALNS 161 (204)
Q Consensus 141 ~~H~~~N~g~~~a~~i~~~~s 161 (204)
+.|++.-.+.. +++.=+++
T Consensus 170 ~yH~Fw~e~g~--vLigEVSt 188 (225)
T PF07385_consen 170 IYHWFWGEGGD--VLIGEVST 188 (225)
T ss_dssp EEEEEEE-TTS--EEEEEEEE
T ss_pred CeeeEEecCCC--EEEEeeec
Confidence 99999875433 55554443
No 66
>PF12852 Cupin_6: Cupin
Probab=95.64 E-value=0.027 Score=44.98 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=36.5
Q ss_pred cEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeC
Q 048039 101 SEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNV 148 (204)
Q Consensus 101 ~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~ 148 (204)
.-+.+|++|+..+.+.+. + ....|++||++++|+|..|.+...
T Consensus 36 ~~fh~V~~G~~~l~~~~~----~-~~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG----G-EPIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred eEEEEEECCeEEEEEcCC----C-CeEEecCCCEEEEcCCCCeEeCCC
Confidence 678899999999997531 2 689999999999999999998543
No 67
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.62 E-value=0.13 Score=44.88 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=44.7
Q ss_pred EEEEECCCC--CCCCccCCCCcEEEEEEeCcEEEEEEecCC--------------C--CceeEEEeCCCcEEEECCCCeE
Q 048039 82 VRVDFAPDG--LNPPHTHPRASEIMTLLEGTLEVGFIGTAP--------------D--YRHFSKILNKGDVFVFPMGLLH 143 (204)
Q Consensus 82 ~~~~i~pg~--~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~--------------~--~~~~~~~L~~Gd~~~~p~g~~H 143 (204)
+.+-+.|++ ...+|+=.. .-+++=++|+=++.+..... + ......+|+|||++|+|+|..|
T Consensus 116 ~n~Y~tp~g~~g~~~H~D~~-dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 116 ANAYLTPPGSQGFGPHYDDH-DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEETSSBEESECEE-SS-EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred eEEEecCCCCCCccCEECCc-ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 334456666 689998875 88888999997777765210 0 1235799999999999999999
Q ss_pred EEEeCC
Q 048039 144 YQRNVG 149 (204)
Q Consensus 144 ~~~N~g 149 (204)
.....+
T Consensus 195 ~~~~~~ 200 (319)
T PF08007_consen 195 QAVTTD 200 (319)
T ss_dssp EEEESS
T ss_pred CCCCCC
Confidence 999887
No 68
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.59 E-value=0.057 Score=39.89 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=47.4
Q ss_pred CCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECC--CCeEEEEeCCC-CCEEEEEE
Q 048039 89 DGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPM--GLLHYQRNVGK-VNAVAIAA 158 (204)
Q Consensus 89 g~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~--g~~H~~~N~g~-~~a~~i~~ 158 (204)
+...++|-|.+-+-+-||++|+++.. |+. + ...+|++||+-++-+ |+.|.-.|.++ +++.++-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~--G--~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSL--G--NRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETT--S--EEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCC--C--CeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 55568999998677789999998765 544 2 478899999887765 57999999877 77777644
No 69
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.43 E-value=0.062 Score=44.12 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=49.1
Q ss_pred EEEEEECC-CCCCCCccCCCCcEEEEEEeCcEEEEEEecCC---------------------------------CCceeE
Q 048039 81 MVRVDFAP-DGLNPPHTHPRASEIMTLLEGTLEVGFIGTAP---------------------------------DYRHFS 126 (204)
Q Consensus 81 ~~~~~i~p-g~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~---------------------------------~~~~~~ 126 (204)
...+-+.+ |...++|+... .-++.+++|+=++.+..+.. ..+...
T Consensus 132 ~~~l~ig~~gs~t~lH~D~~-~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDPS-HNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-SS-EEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECch-hhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566765 55789999874 88999999998887765441 013468
Q ss_pred EEeCCCcEEEECCCCeEEEEeCCCCC
Q 048039 127 KILNKGDVFVFPMGLLHYQRNVGKVN 152 (204)
Q Consensus 127 ~~L~~Gd~~~~p~g~~H~~~N~g~~~ 152 (204)
.+|++||+++||+|..|++.|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984444
No 70
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=95.35 E-value=0.11 Score=42.58 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=58.6
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCC---C-----CceeEE-------EeCCCc-EEEECCC-
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAP---D-----YRHFSK-------ILNKGD-VFVFPMG- 140 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~---~-----~~~~~~-------~L~~Gd-~~~~p~g- 140 (204)
.+++...-+++|..+|+|=||+..-+.-||.|++.+.--|--. + .+.... .-.+++ .+..|..
T Consensus 43 ~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~g 122 (200)
T PF07847_consen 43 DFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSG 122 (200)
T ss_pred CcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCC
Confidence 5778888899999999999999777788999999986543110 0 000111 122334 4555654
Q ss_pred -CeEEEEeCCCCCEEEEEEEcC
Q 048039 141 -LLHYQRNVGKVNAVAIAALNS 161 (204)
Q Consensus 141 -~~H~~~N~g~~~a~~i~~~~s 161 (204)
-+|.+.+.+ +++.++-++.-
T Consensus 123 gNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 123 GNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred CeeEEEEeCC-CCeEEEEEccC
Confidence 899999987 89999999873
No 71
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=95.23 E-value=0.045 Score=45.05 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=48.3
Q ss_pred ECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEE
Q 048039 86 FAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQ 145 (204)
Q Consensus 86 i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~ 145 (204)
-.|+...-.|..++ +|++|-.+|.+.+-+.+. ++.+...+++||++..|+.++|+-
T Consensus 40 GGPN~RkdyHieeg-eE~FyQ~KGdMvLKVie~---g~~rDivI~qGe~flLParVpHSP 95 (279)
T KOG3995|consen 40 GGPNTRKDYHIEEG-EEVFYQLKGDMVLKVLEQ---GKHRDVVIRQGEIFLLPARVPHSP 95 (279)
T ss_pred cCCCcccccccCCc-chhheeecCceEEeeecc---CcceeeEEecCcEEEeccCCCCCh
Confidence 35666777888887 999999999999999876 456789999999999999999964
No 72
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.17 E-value=0.32 Score=44.29 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=44.4
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 93 PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
..-.+.+++|++++-+|++.+...- | ...+++||.++||+|+.+++.- .+++++.+.+
T Consensus 147 ~~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 147 RYFYNADGELLIVPQQGRLRLATEL----G---VLDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred ceeecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 3445556799999999999998642 3 7899999999999999999863 2345555443
No 73
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.02 E-value=0.35 Score=43.94 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=45.1
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEc
Q 048039 93 PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~ 160 (204)
..-...++++++++-+|++.+...- | ...+++||.++||+|+.+++.-.+.....++.++.
T Consensus 141 ~~f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 141 RAFYNADGDFLIVPQQGALLITTEF----G---RLLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred ceeeccCCCEEEEEEeCcEEEEEec----c---ceEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 3344556699999999999998642 3 78999999999999999998765433333344443
No 74
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=94.91 E-value=0.19 Score=39.72 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=48.6
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCC----CceeEEEeCCCcEEEECCCCeEEEEeCCCCCEE
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPD----YRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAV 154 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~----~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~ 154 (204)
+++..+++.||...|+|-|-- .-++=|+.|.-+-.+-.-.++ ...+.+.+.+|++- .-+|.+|.+.|.+.....
T Consensus 73 ltV~~~t~~PG~~~p~HnH~~-wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHLM-WGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCcccch-heeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence 678999999999999999964 888888888644322111100 01134456666665 444666666666554443
Q ss_pred EEEEE
Q 048039 155 AIAAL 159 (204)
Q Consensus 155 ~i~~~ 159 (204)
.|=++
T Consensus 151 aiHvy 155 (191)
T COG5553 151 AIHVY 155 (191)
T ss_pred eEEEE
Confidence 33333
No 75
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.83 E-value=0.22 Score=42.75 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=57.7
Q ss_pred eEEEEEEEECCCC---CCCCccCCCCcEEEE---EEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCC
Q 048039 78 GLSMVRVDFAPDG---LNPPHTHPRASEIMT---LLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKV 151 (204)
Q Consensus 78 g~s~~~~~i~pg~---~~ppH~H~~a~E~~y---Vl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~ 151 (204)
.+-+....+.||+ .-|||.|++..|..+ +-++...+.+.++- ++-+...++-+|+++.|+-.+|... |..
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p--dETrh~~v~n~~aVisP~wsih~g~--gt~ 249 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP--QETRHIVVHNEQAVISPSWSIHSGV--GTS 249 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc--cceeeEEEECCCEEECCCcceecCc--Ccc
Confidence 4666667778998 369999997677544 22333333332211 2112388999999999999999864 677
Q ss_pred CEEEEEEEcCCCCC
Q 048039 152 NAVAIAALNSQNPG 165 (204)
Q Consensus 152 ~a~~i~~~~s~~pg 165 (204)
.-.|||....+|-.
T Consensus 250 ~y~fiw~m~gen~~ 263 (276)
T PRK00924 250 NYTFIWGMAGENQD 263 (276)
T ss_pred ccEEEEEecccCcC
Confidence 88999988877643
No 76
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.83 E-value=0.12 Score=44.55 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=53.1
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCC--CeEEEEeC--CCCCEEEEEEE
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMG--LLHYQRNV--GKVNAVAIAAL 159 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g--~~H~~~N~--g~~~a~~i~~~ 159 (204)
..+.||...+||-|.+-+-+-||++|+++.. |+. + ....+++||+-..-+| +.|.-.|. ..+++..+-+.
T Consensus 49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~--G--n~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlW 122 (276)
T COG1741 49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSL--G--NKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLW 122 (276)
T ss_pred ccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecC--C--ceeeecccceeEEcCCCceeecccCCccCCCccceeeee
Confidence 4588999999999998666789999998875 444 2 3789999998888665 79998886 33455555444
No 77
>PLN02658 homogentisate 1,2-dioxygenase
Probab=94.76 E-value=0.39 Score=43.71 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=42.7
Q ss_pred ccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 95 HTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 95 H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
-.+.++++++++-+|++.+...- | ...+++||.++||+|+.+++.-. +++++.+.
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEf----G---~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv 196 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTEL----G---KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYV 196 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEec----c---ceEecCCCEEEecCccEEEEecC-CCCeeEEE
Confidence 45556799999999999997642 3 78899999999999999998643 34555543
No 78
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=94.61 E-value=0.13 Score=40.66 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=45.2
Q ss_pred EEEEEEECCCCCCCCccCCCC----cEEEEEE-eCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEE
Q 048039 80 SMVRVDFAPDGLNPPHTHPRA----SEIMTLL-EGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAV 154 (204)
Q Consensus 80 s~~~~~i~pg~~~ppH~H~~a----~E~~yVl-~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~ 154 (204)
.+....+.||+.+.||.-+.. ..+.+++ .+...+.++ + +....++|++++|.-...|...|.|+++-+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~-----~--~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv 153 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG-----G--ETRHWREGECWVFDDSFEHEVWNNGDEDRV 153 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET-----T--EEEB--CTEEEEE-TTS-EEEEESSSS-EE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC-----C--eEEEeccCcEEEEeCCEEEEEEeCCCCCEE
Confidence 344567799999999987542 2334444 355666664 3 689999999999999999999999887644
Q ss_pred EE
Q 048039 155 AI 156 (204)
Q Consensus 155 ~i 156 (204)
.|
T Consensus 154 ~L 155 (163)
T PF05118_consen 154 VL 155 (163)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 79
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.48 E-value=0.27 Score=39.90 Aligned_cols=79 Identities=24% Similarity=0.235 Sum_probs=47.5
Q ss_pred EEEEECCCCCCCCccCCCCcEEEE-EEeCcEEEEEEecC---C-----------CCce------eEEEeCCCcEEEECCC
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMT-LLEGTLEVGFIGTA---P-----------DYRH------FSKILNKGDVFVFPMG 140 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~y-Vl~G~~~~~~~~~~---~-----------~~~~------~~~~L~~Gd~~~~p~g 140 (204)
..+.+.+|...|+|.|.+-.|=+. ==.|++.+.+.... + ++.. -...|+||+.+.+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 346678999999999985333221 11233433332211 0 1111 2578999999999999
Q ss_pred CeEEEEeCCCCCEEEEEEEcCC
Q 048039 141 LLHYQRNVGKVNAVAIAALNSQ 162 (204)
Q Consensus 141 ~~H~~~N~g~~~a~~i~~~~s~ 162 (204)
+-|+++..+.. +++.=.++.
T Consensus 169 ~~HsFwae~g~--vlvgEvSsv 188 (225)
T COG3822 169 LYHSFWAEEGG--VLVGEVSSV 188 (225)
T ss_pred ceeeeeecCCc--EEEEEEeec
Confidence 99999874333 555444433
No 80
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=94.40 E-value=0.13 Score=37.06 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=30.5
Q ss_pred EEECCCCCCCCccCCCCc--EEEEEE--eCcEEEEEEecCC----------------CCceeEEEeCCCcEEEECCCCeE
Q 048039 84 VDFAPDGLNPPHTHPRAS--EIMTLL--EGTLEVGFIGTAP----------------DYRHFSKILNKGDVFVFPMGLLH 143 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~--E~~yVl--~G~~~~~~~~~~~----------------~~~~~~~~L~~Gd~~~~p~g~~H 143 (204)
....+|+...+|.|+++. =++||- ++...+.+.++.. .........++||+++||+.+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 445688888999998732 223332 1222223332210 01224667899999999999999
Q ss_pred EEEe-CCC
Q 048039 144 YQRN-VGK 150 (204)
Q Consensus 144 ~~~N-~g~ 150 (204)
...- .++
T Consensus 85 ~v~p~~~~ 92 (101)
T PF13759_consen 85 GVPPNNSD 92 (101)
T ss_dssp EE----SS
T ss_pred eccCcCCC
Confidence 9754 444
No 81
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.34 E-value=0.22 Score=40.83 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=45.1
Q ss_pred EEEEEECCCCCCCCccCCCC--cEEEEEE--eCcEEEEEEecCCC----------------CceeEEEeCCCcEEEECCC
Q 048039 81 MVRVDFAPDGLNPPHTHPRA--SEIMTLL--EGTLEVGFIGTAPD----------------YRHFSKILNKGDVFVFPMG 140 (204)
Q Consensus 81 ~~~~~i~pg~~~ppH~H~~a--~E~~yVl--~G~~~~~~~~~~~~----------------~~~~~~~L~~Gd~~~~p~g 140 (204)
.....+.+|+....|.|+++ +=++||- +|...+.+.++... .......-++|++++||+-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 44456789999999999984 2234444 12222222221100 0001234589999999999
Q ss_pred CeEEEEeCCCCCEEEEEEEc
Q 048039 141 LLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 141 ~~H~~~N~g~~~a~~i~~~~ 160 (204)
+.|...-...+.-++...|+
T Consensus 178 L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 178 LRHEVPPNESEEERISVSFN 197 (201)
T ss_pred CceecCCCCCCCCEEEEEEe
Confidence 99997543333334444443
No 82
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=94.27 E-value=0.47 Score=34.24 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=44.2
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEE
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAAL 159 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~ 159 (204)
-.+.||. .+....+.|+.-|++|++++.+.++ .....+++|+.|.+|++.--.++.. ++..+++.+
T Consensus 28 GVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~-----~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 28 GVMLPGE---YTFGTSAPERMEVVSGELEVKLPGE-----DEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EEE-SEC---EEEEESS-EEEEEEESEEEEEETT------SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCC-----cccEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 3456665 2333446999999999999999743 2589999999999999998887764 566666543
No 83
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.24 E-value=0.32 Score=41.44 Aligned_cols=66 Identities=17% Similarity=0.053 Sum_probs=46.3
Q ss_pred eEEEEEEEECCCCCC-----CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCC
Q 048039 78 GLSMVRVDFAPDGLN-----PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 78 g~s~~~~~i~pg~~~-----ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~ 150 (204)
++.+.++...+.... ..|.+.....++++++|++.+... + ....+++||+++++++.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~-----g--~~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD-----D--RQVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC-----C--eEEEEcCCCEEEEECCCCcEeecCCC
Confidence 355666665554321 133344445677889999999875 4 58999999999999999998765443
No 84
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.91 E-value=0.29 Score=41.92 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=47.2
Q ss_pred CCCCCCCCccC-CCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCC-CcEEEECCCCeEEEEeCCC
Q 048039 87 APDGLNPPHTH-PRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNK-GDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 87 ~pg~~~ppH~H-~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~-Gd~~~~p~g~~H~~~N~g~ 150 (204)
-|++...+|.| ++..|.+.|++|++.+.+-++.+ .......+.+ ++.-+++++.-|.....++
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g-~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDG-EELSEHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCC-CeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence 46778889999 67899999999999998876553 2223455555 4565799999999987643
No 85
>PRK10579 hypothetical protein; Provisional
Probab=93.78 E-value=0.52 Score=33.94 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 98 PRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 98 ~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
..+.|+.-|++|++++.+.++ -+...+++|+.|.+|++..-.++.. +...+++.
T Consensus 39 T~~~E~MeivsG~l~V~Lpg~-----~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 39 TAEPEEMTVISGALNVLLPGA-----TDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred CCCcEEEEEEeeEEEEECCCC-----cccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 346999999999999999743 2589999999999999998877653 45555544
No 86
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.48 E-value=0.25 Score=35.96 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=44.5
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEc
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~ 160 (204)
..++++||+.......++..-++||++|++.+. +. ...+.+|+.+++..|..-.+.+.+ +.++++.+-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-------~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-------GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-------TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-------CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 457788887643222222367899999998763 32 378999999999977666666654 7788776644
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=93.31 E-value=0.45 Score=31.64 Aligned_cols=57 Identities=12% Similarity=0.028 Sum_probs=42.3
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEe
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRN 147 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N 147 (204)
.++.||....++... ...+.|.+|++-+... +....+.|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~-----g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA--GQRLRVESGRVWLTRE-----GDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC--CcEEEEccccEEEECC-----CCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 356677766666554 3449999999988875 33468999999999999998766543
No 88
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=93.09 E-value=1.3 Score=33.76 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=45.2
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCC
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVN 152 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~ 152 (204)
+.+.++.....-......+....-+.+.++|...+... + ....+.+||+++++++.++.+...+...
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~-----g--~~~~~~pg~~~l~d~~~~~~~~~~~~~~ 100 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG-----G--REVELAPGDVVLLDPGQPYRLEFSAGCR 100 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC-----C--EEEEEcCCeEEEEcCCCCEEEEECCCcc
Confidence 45555665533322111122235677788999998875 3 6999999999999999999887654433
No 89
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=92.96 E-value=0.2 Score=36.17 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=21.5
Q ss_pred eeEEEeCCCcEEEECCCCeEEEEeCCCC
Q 048039 124 HFSKILNKGDVFVFPMGLLHYQRNVGKV 151 (204)
Q Consensus 124 ~~~~~L~~Gd~~~~p~g~~H~~~N~g~~ 151 (204)
....+.++||.+++|+|..|+..|.|..
T Consensus 80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 80 VYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp -EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cccceECCCCEEEECCCceEEEEeCCce
Confidence 3578889999999999999999999864
No 90
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.095 Score=48.08 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=45.5
Q ss_pred CCCCC-CCCccCCCCcEEEEEEeCcEEEEEEecCC------------------CCceeEEEeCCCcEEEECCCCeEEEEe
Q 048039 87 APDGL-NPPHTHPRASEIMTLLEGTLEVGFIGTAP------------------DYRHFSKILNKGDVFVFPMGLLHYQRN 147 (204)
Q Consensus 87 ~pg~~-~ppH~H~~a~E~~yVl~G~~~~~~~~~~~------------------~~~~~~~~L~~Gd~~~~p~g~~H~~~N 147 (204)
+||+. .+|||-.- +-+++-++|+=.+.+-.+.- +..+....|++||++|||+|.+|....
T Consensus 325 PagSqGfaPHyDdI-eaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDDI-EAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhhh-hhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 56664 79999975 77888899986665543320 012346789999999999999999876
Q ss_pred CC
Q 048039 148 VG 149 (204)
Q Consensus 148 ~g 149 (204)
..
T Consensus 404 ~~ 405 (629)
T KOG3706|consen 404 PA 405 (629)
T ss_pred cc
Confidence 54
No 91
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=92.38 E-value=1.3 Score=31.16 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=39.6
Q ss_pred CCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCC
Q 048039 98 PRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 98 ~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~ 150 (204)
.+...-+.|++|++.+..-++.++--.+...+.+|+..++++...|.+.-.++
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 44566789999999999886542111357888999999999999999987765
No 92
>PLN02288 mannose-6-phosphate isomerase
Probab=92.16 E-value=0.48 Score=42.81 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=40.8
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCC
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGL 141 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~ 141 (204)
.+++.++++.++.......+.+ ..+++|++|++++... +......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~g-p~Illv~~G~~~i~~~-----~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVPG-PSVFLVIEGEGVLSTG-----SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCCC-CEEEEEEcCEEEEecC-----CccceEEEeceeEEEEeCCC
Confidence 5678888887775422222333 8899999999998643 21123679999999999864
No 93
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.91 E-value=1.3 Score=39.98 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=41.6
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
.+.+.++++..+.. +.......+++|++|++++... + .+..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~-----~--~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKG-----E--QQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeC-----C--eEEEECCCCEEEEeCCCccEEE
Confidence 35666667655422 2222347999999999998642 3 4788999999999998776554
No 94
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=91.18 E-value=1.8 Score=37.54 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=42.4
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
.+.+.++++..... ...+ ....+++|++|++++... + .+..|++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~--~~~~-~~~~il~v~~G~~~i~~~-----~--~~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQ-QSALILSVLEGSGRIKSG-----G--KTLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccC-CCcEEEEEEcceEEEEEC-----C--EEEEEecccEEEEccCCccEEE
Confidence 56777777754321 1123 348899999999998652 3 4789999999999999865544
No 95
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.03 E-value=3.5 Score=36.75 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=44.2
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 93 PPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
..-+.-+.+|++|+-+|++++...- -...+++||..+||+|+.....-...+ ++.+.+
T Consensus 139 ~~f~NADge~Livpq~G~l~l~te~-------G~l~v~pgeiavIPRG~~frve~~~~~-~rgy~~ 196 (427)
T COG3508 139 RFFRNADGELLIVPQQGELRLKTEL-------GVLEVEPGEIAVIPRGTTFRVELKDGE-ARGYGC 196 (427)
T ss_pred hhhhcCCCCEEEEeecceEEEEEee-------ceEEecCCcEEEeeCCceEEEEecCCc-eEEEEE
Confidence 3345556699999999999987642 389999999999999999998765444 444443
No 96
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=90.25 E-value=1.8 Score=38.66 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=51.0
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAI 156 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i 156 (204)
.+.+.+++++.|.....-.-++ .-++.|++|++++.... + ....+++||+++||+...-.+.. .+++...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~~-~SIllv~~G~g~l~~~t----~--~~~~v~rG~V~fI~a~~~i~~~~-~sd~~~~y 402 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVDG-PSILLVLKGSGILKTDT----D--SKILVNRGDVLFIPANHPIHLSS-SSDPFLGY 402 (411)
T ss_pred ceeEEEeecCCCceEEeecCCC-ceEEEEEecceEEecCC----C--CceeeccCcEEEEcCCCCceeec-cCcceeee
Confidence 5678888888876533333444 78999999999998752 1 47999999999999998765543 33444333
No 97
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=88.26 E-value=1.3 Score=36.69 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCc--e
Q 048039 90 GLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGT--S 167 (204)
Q Consensus 90 ~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~--~ 167 (204)
|....|| ++..++|++|+..-... ++.+....++||..+.++|....++-. +.+-++.--..--|.. +
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~~-----g~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~lpf 181 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWSP-----GSLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSMLPF 181 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEcC-----CCCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhhHH
Confidence 3445555 47789999999988765 455789999999999999999988765 3344443322222322 2
Q ss_pred ecccccccCCCCCCHHHHHHhcCCCHHH
Q 048039 168 SIAPALFTSKPVLNDEIISKTFLFDKKN 195 (204)
Q Consensus 168 ~~~~~~f~~~p~~~~~vl~~~f~~~~~~ 195 (204)
.+++.+|++ ++-..+-++..+...+
T Consensus 182 ~~~dt~~sT---lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 182 GFADTLFST---LDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHHhc---cchHHHHHHHHHHHHH
Confidence 344677776 7777777776665543
No 98
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=88.24 E-value=4.4 Score=32.24 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=69.2
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEEC----CCCeEEEEeCCCCCEEEEE
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFP----MGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p----~g~~H~~~N~g~~~a~~i~ 157 (204)
....+++|...-..-.+ ...+++|++|.+.+...+.+| ++.....+.+||.+-.. ....+...-...+++.++.
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~ 98 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAE 98 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEE
Confidence 45677787765333233 478999999999998765543 33345678999987442 2222322222345566665
Q ss_pred EEc-------CCCCCcee----------------------------cccccc------cC--CC-----CCCHHHHHHhc
Q 048039 158 ALN-------SQNPGTSS----------------------------IAPALF------TS--KP-----VLNDEIISKTF 189 (204)
Q Consensus 158 ~~~-------s~~pg~~~----------------------------~~~~~f------~~--~p-----~~~~~vl~~~f 189 (204)
+=. .++|.... ++..+. +. .| .++.+-||..+
T Consensus 99 i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 178 (211)
T PRK11753 99 ISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIV 178 (211)
T ss_pred EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHh
Confidence 432 23444310 001110 00 00 36778899999
Q ss_pred CCCHHHHHHHHhcC
Q 048039 190 LFDKKNVAILRSKF 203 (204)
Q Consensus 190 ~~~~~~v~~l~~~~ 203 (204)
|++++.+.++.+++
T Consensus 179 G~tr~tvsR~l~~l 192 (211)
T PRK11753 179 GCSREMVGRVLKML 192 (211)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998876654
No 99
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=87.42 E-value=5.4 Score=32.71 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=48.7
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
.......+++|...-..-.+ ...+++|++|.+.+...+.+| .+.....+.+||++-+..+.++.....--+++.++.+
T Consensus 36 ~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G-~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i 113 (230)
T PRK09391 36 LVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDG-RRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLI 113 (230)
T ss_pred ceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEE
Confidence 34556778888765433333 478899999999998876653 2223455689998876655544333223355555543
No 100
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=87.22 E-value=12 Score=31.92 Aligned_cols=97 Identities=22% Similarity=0.347 Sum_probs=49.3
Q ss_pred eEEEEeccccCCCCCceEEEEEEEECCCC---CCCCccCCCC--------cEEEEE-EeCcEEEEE--E-ecCCCCceeE
Q 048039 62 KATPVYVQQIPGLNTLGLSMVRVDFAPDG---LNPPHTHPRA--------SEIMTL-LEGTLEVGF--I-GTAPDYRHFS 126 (204)
Q Consensus 62 ~~~~~~~~~~P~l~~~g~s~~~~~i~pg~---~~ppH~H~~a--------~E~~yV-l~G~~~~~~--~-~~~~~~~~~~ 126 (204)
.|..+...+.+. .-.+-+..+. .|++ .-|||.|++. +|+.|- +.-.--+++ . ...+ ..-+.
T Consensus 136 ~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~-~~d~~ 211 (261)
T PF04962_consen 136 TVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP-QLDEH 211 (261)
T ss_dssp EEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS-SSEEE
T ss_pred EEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCC-CCcEE
Confidence 344444444442 2234555555 5555 4699999862 455443 232211111 1 1111 11258
Q ss_pred EEeCCCcEEEECCCCeEEEE-eCCCCCEEEEEEEcCCCC
Q 048039 127 KILNKGDVFVFPMGLLHYQR-NVGKVNAVAIAALNSQNP 164 (204)
Q Consensus 127 ~~L~~Gd~~~~p~g~~H~~~-N~g~~~a~~i~~~~s~~p 164 (204)
..++-||++.+|+| .|-+. .+|.. ..+|+++...++
T Consensus 212 ~~V~~~d~V~iP~g-yHp~~aapGy~-~Yylw~maG~~r 248 (261)
T PF04962_consen 212 YVVRNGDAVLIPSG-YHPVVAAPGYD-MYYLWVMAGENR 248 (261)
T ss_dssp EEEETTEEEEESTT-B-SEEEEEESS-EEEEEEEESSS-
T ss_pred EEEECCCEEEeCCC-CCCcCcCCCcC-cEEEEEEEcCCc
Confidence 89999999999999 33332 24444 458888887773
No 101
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.83 E-value=2.4 Score=29.92 Aligned_cols=43 Identities=28% Similarity=0.333 Sum_probs=35.7
Q ss_pred CCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEE
Q 048039 99 RASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 99 ~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
.+.|...|+.|.+++.+.++ .+.++..+|+.|.+|.+....++
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs-----~dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGS-----DDWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCC-----cccEEecCCceEEcCCCCeEEEE
Confidence 35899999999999999753 26899999999999998765543
No 102
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=86.19 E-value=1.3 Score=39.53 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=47.1
Q ss_pred EECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCC---------------CCceeEEEeCCCcEEEECCCCeEEEEeC
Q 048039 85 DFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAP---------------DYRHFSKILNKGDVFVFPMGLLHYQRNV 148 (204)
Q Consensus 85 ~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~---------------~~~~~~~~L~~Gd~~~~p~g~~H~~~N~ 148 (204)
-..+||.+.+|+-+. .-+++-..|+=+..++.... ..--....|.|||++|+|+|..|+-...
T Consensus 125 ~a~~GGgvg~H~D~Y-DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae 202 (383)
T COG2850 125 FAAPGGGVGPHFDQY-DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE 202 (383)
T ss_pred EecCCCccCccccch-heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence 347899999999987 87777778887777754310 0001357899999999999999997765
No 103
>PHA02984 hypothetical protein; Provisional
Probab=85.10 E-value=7.8 Score=33.20 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=46.2
Q ss_pred EEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCceecccccc
Q 048039 103 IMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALF 174 (204)
Q Consensus 103 ~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f 174 (204)
++.+++|+.++.+... ++..+..+++||.|.+.-+.-|.... .+..++++.+.-..+.-++...+-+|
T Consensus 96 FvlCl~G~~~I~~~~~---~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi~y~v~~pfihykNvV~ 163 (286)
T PHA02984 96 FVLCLNGKTSIECFNK---GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVITYTSNCPFIHYKNIVF 163 (286)
T ss_pred EEEEcCCeEEEEEecC---CceeeeEEecCceEEEEccceEEEEe-CCCceEEEEEEEEecceEEEeccEEE
Confidence 3556789999888653 34578999999999999999999865 45556655544333333444443333
No 104
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=84.30 E-value=8.1 Score=33.86 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=41.2
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQ 145 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~ 145 (204)
.+++.+.++..-... .+ +. ...+++|++|++++... + +...|++|+.+++|+...-+.
T Consensus 241 ~F~l~~~~i~~~~~~-~~-~~-~~~il~v~eG~~~l~~~-----~--~~~~l~~G~s~~ipa~~~~~~ 298 (312)
T COG1482 241 DFALYKWDISGTAEF-IK-QE-SFSILLVLEGEGTLIGG-----G--QTLKLKKGESFFIPANDGPYT 298 (312)
T ss_pred ceEEEEEeccChhhh-cc-CC-CcEEEEEEcCeEEEecC-----C--EEEEEcCCcEEEEEcCCCcEE
Confidence 456666666541111 11 22 48999999999999864 2 699999999999999855443
No 105
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=82.71 E-value=11 Score=32.38 Aligned_cols=52 Identities=13% Similarity=-0.053 Sum_probs=38.2
Q ss_pred CcEE-EEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEe--CCCCCEEEEEE
Q 048039 100 ASEI-MTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRN--VGKVNAVAIAA 158 (204)
Q Consensus 100 a~E~-~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N--~g~~~a~~i~~ 158 (204)
..|+ ++.+.|++++.++ + +++.|.+.|++++|.|..-.... ....++++...
T Consensus 73 rrE~giV~lgG~~~V~vd-----G--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 73 RRELGIINIGGAGTVTVD-----G--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CcEEEEEEccceEEEEEC-----C--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 3665 6678899999975 4 57889999999999998765553 23456666644
No 106
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=82.67 E-value=11 Score=32.10 Aligned_cols=70 Identities=13% Similarity=-0.070 Sum_probs=45.7
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCC--------cEEEECCCCeEEEEeCCC
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKG--------DVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~G--------d~~~~p~g~~H~~~N~g~ 150 (204)
+.+..+++++|.....-...+ +-.++.|+|++++.+. +. ..+.|..- |++++|+|..-.+....+
T Consensus 27 ~~~~~l~L~~g~~~~~~~~~~-E~~vv~l~G~~~v~~~-----g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELERR-ELGVVNLGGKATVTVD-----GE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD 99 (261)
T ss_dssp BECCCEEEECCHCCCCCCCSE-EEEEEEESSSEEEEET-----TE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST
T ss_pred cceEEEEecCCCEEeccCCCc-EEEEEEeCCEEEEEeC-----Cc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC
Confidence 445568888887655444432 5557788999999984 22 46777776 999999999988877544
Q ss_pred CCEEEEE
Q 048039 151 VNAVAIA 157 (204)
Q Consensus 151 ~~a~~i~ 157 (204)
+++..
T Consensus 100 --ae~~~ 104 (261)
T PF04962_consen 100 --AEFAV 104 (261)
T ss_dssp --EEEEE
T ss_pred --CEEEE
Confidence 55543
No 107
>PHA02890 hypothetical protein; Provisional
Probab=81.34 E-value=13 Score=31.61 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=45.0
Q ss_pred cEE--EEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCceecccccc
Q 048039 101 SEI--MTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSSIAPALF 174 (204)
Q Consensus 101 ~E~--~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~~~~~~f 174 (204)
.|. +.+++|+.++.+... ++..+..+++||.|.+.-+.-|.... ..+.++.+--..+.-++..-+-+|
T Consensus 91 nEy~FVlCL~Gs~~In~~~~---d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~pfiy~kNVVf 160 (278)
T PHA02890 91 IECFFVACIEGSCKINVNIG---DREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAHIFYGQNVII 160 (278)
T ss_pred ccEEEEEEeCCeEEEEEecC---CceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecceEEEecceEE
Confidence 454 456789999887643 45579999999999999999999875 455554443333333333333333
No 108
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=81.15 E-value=2.8 Score=28.08 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=25.8
Q ss_pred CcEEEEEEeCcEEEEEEecCCCCc-eeEEEeCCCcEE
Q 048039 100 ASEIMTLLEGTLEVGFIGTAPDYR-HFSKILNKGDVF 135 (204)
Q Consensus 100 a~E~~yVl~G~~~~~~~~~~~~~~-~~~~~L~~Gd~~ 135 (204)
...+++|++|.+.+...+.+ ++ .....+.+|+++
T Consensus 17 ~~~~~~i~~G~v~~~~~~~~--~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSINED--GKEQIIFFLGPGDIF 51 (91)
T ss_dssp ESEEEEEEESEEEEEEETTT--SEEEEEEEEETTEEE
T ss_pred CCEEEEEEECceEEEeceec--ceeeeecceeeeccc
Confidence 48999999999999988654 22 125677888876
No 109
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=78.37 E-value=21 Score=28.25 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=48.7
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEecCCC---CceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 93 PPHTHPRASEIMTLLEGTLEVGFIGTAPD---YRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G~~~~~~~~~~~~---~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
.+-.|+..+|.++-+.|+-.+-++.+.++ .+.+.+...+|+.+.+-+|+-|...-.=+.+..++.+
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 34567778999999999988888765421 2467899999999999999999654333444555444
No 110
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=76.96 E-value=2.2 Score=37.34 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred eeEEEeCCCcEEEECCCCeEEEE
Q 048039 124 HFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 124 ~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
+....|+|||.+++|+|.+|.+.
T Consensus 157 Ln~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 157 LNRVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred hcEEecCCCCEEEecCCCceeec
Confidence 35789999999999999999984
No 111
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=76.36 E-value=20 Score=28.29 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=40.4
Q ss_pred CccCCCCcEEEEEEeCcE-EEEEEecCCC----CceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEc
Q 048039 94 PHTHPRASEIMTLLEGTL-EVGFIGTAPD----YRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALN 160 (204)
Q Consensus 94 pH~H~~a~E~~yVl~G~~-~~~~~~~~~~----~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~ 160 (204)
+-.|+...|.++-+.|+. .+-++...++ .+++.+.+.+|+.+.+.+|+-|...-.=++++.++.+-.
T Consensus 74 lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~~ 145 (165)
T PF04115_consen 74 LERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVDR 145 (165)
T ss_dssp EEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEEE
T ss_pred eccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEeC
Confidence 346777899999999988 5555444321 356789999999999999999985443346677776643
No 112
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=75.96 E-value=10 Score=29.98 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=34.4
Q ss_pred EEEECCCCCCCCccCC-CCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEE
Q 048039 83 RVDFAPDGLNPPHTHP-RASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVF 137 (204)
Q Consensus 83 ~~~i~pg~~~ppH~H~-~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~ 137 (204)
...+++|...-..--+ ....+++|++|.+.+...+.+| .+.....+.+||++=.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G-~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEG-NALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCeech
Confidence 3456666543222111 2367999999999998877653 3334566699998744
No 113
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=75.73 E-value=10 Score=25.96 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=33.6
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEE
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVF 135 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~ 135 (204)
....+.+|...-..-.+ ...+.+|++|.+.+...+++| .+.....+.+|+.+
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~ 69 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDG-REQIVGFLGPGDLF 69 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCC-cEEEEEecCCccCc
Confidence 34566777754222222 378999999999998876542 22346667888876
No 114
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=75.59 E-value=13 Score=25.44 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=35.7
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEE
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVF 137 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~ 137 (204)
....+.+|... .+.......+.+|++|.+.+...+.++ +......+.+||.+-.
T Consensus 18 ~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 18 EPVRYPAGEVI-IRQGDVGDSFYIILSGEVRVYKVLEDG-REQILGILGPGDFFGE 71 (120)
T ss_pred eEEEeCCCCEE-EeCCCcCCcEEEEEeeEEEEEEECCCC-ceEEEEeecCCceech
Confidence 34567777754 233333578999999999998765432 3335677788987744
No 115
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=74.77 E-value=3.2 Score=37.44 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=20.6
Q ss_pred eeEEEeCCCcEEEECCCCeEEEE
Q 048039 124 HFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 124 ~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
+....|++||++++|+|.+|.+.
T Consensus 236 LN~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 236 LNVVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred eeEEEeCCCCEEEeCCCCCeEEc
Confidence 34789999999999999999985
No 116
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=74.58 E-value=37 Score=26.12 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=54.4
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeC-cEEEEEEecCCCCceeEEEeCC----Cc--EEEECCCCeEEEEeCCCC
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEG-TLEVGFIGTAPDYRHFSKILNK----GD--VFVFPMGLLHYQRNVGKV 151 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G-~~~~~~~~~~~~~~~~~~~L~~----Gd--~~~~p~g~~H~~~N~g~~ 151 (204)
.+..+.-+.++....+|.= ++.|+.+-..| .+++.+.+++ ++.+...|.. |+ .+++|+|.....+-.+..
T Consensus 41 ~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~d--g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~ 117 (139)
T PF06172_consen 41 STSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPD--GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEG 117 (139)
T ss_dssp -EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTT--STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESS
T ss_pred ceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCC--CCeEEEEECCCCCCCceEEEEECCCEEEEccccCCC
Confidence 4455555777777777765 46999999998 5888888876 5556667743 44 788999999988655566
Q ss_pred CEEEEEEEc
Q 048039 152 NAVAIAALN 160 (204)
Q Consensus 152 ~a~~i~~~~ 160 (204)
.-.+++..-
T Consensus 118 ~y~Lvsc~V 126 (139)
T PF06172_consen 118 DYSLVSCTV 126 (139)
T ss_dssp SEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 666666543
No 117
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=74.29 E-value=12 Score=32.41 Aligned_cols=46 Identities=7% Similarity=-0.095 Sum_probs=38.2
Q ss_pred cEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCC
Q 048039 101 SEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVN 152 (204)
Q Consensus 101 ~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~ 152 (204)
.-++++.+|.+++...+ + ....+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~----g--~~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS----G--EYITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC----C--ceEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 66899999999997642 2 4689999999999999999999875443
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=73.98 E-value=1.8 Score=37.47 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.0
Q ss_pred eEEEeCCCcEEEECCCCeEEE
Q 048039 125 FSKILNKGDVFVFPMGLLHYQ 145 (204)
Q Consensus 125 ~~~~L~~Gd~~~~p~g~~H~~ 145 (204)
....+++||++++|+|.+|..
T Consensus 151 n~v~v~~Gd~i~ipaGt~HA~ 171 (302)
T TIGR00218 151 NRIKLKPGDFFYVPSGTPHAY 171 (302)
T ss_pred cccccCCCCEEEeCCCCcccc
Confidence 368899999999999999984
No 119
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=71.05 E-value=18 Score=29.34 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=34.8
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEE
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVF 137 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~ 137 (204)
..+++|...-.. ......+++|++|.+.+...+.+| .+.....+.+||++-.
T Consensus 34 ~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G-~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 34 FHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG-KVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEeeeeecCCCCeEEe
Confidence 456676654222 222478999999999999877653 2233566789998754
No 120
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=69.27 E-value=51 Score=25.51 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=40.3
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEecCC----------------CCceeEEEeCCCcEEEECCCCeEEEE
Q 048039 93 PPHTHPRASEIMTLLEGTLEVGFIGTAP----------------DYRHFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G~~~~~~~~~~~----------------~~~~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
.+-.|.+-..+-|+++|+-.+++..... .+......|++|+.++|.++..|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4556766689999999998888755321 01224788999999999999999865
No 121
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=68.50 E-value=22 Score=30.07 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=55.6
Q ss_pred eEEEEEEEECCCCC---CCCccCCCCcEEEEEEe---CcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCC
Q 048039 78 GLSMVRVDFAPDGL---NPPHTHPRASEIMTLLE---GTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKV 151 (204)
Q Consensus 78 g~s~~~~~i~pg~~---~ppH~H~~a~E~~yVl~---G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~ 151 (204)
.+.+-...++||.. .|.|.|.+..|..+-.. -+-.+.+-++- .+-+...++--+.++-|+-.+|.-. |..
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP--~ETRHiv~~NEqAViSP~WSIHSG~--GT~ 251 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP--QETRHIVMHNEQAVISPPWSIHSGV--GTA 251 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC--CceeEEEEeccceeeCCCceeecCc--ccc
Confidence 46677788999985 79999999888754321 11222222111 2224556677778888999999864 677
Q ss_pred CEEEEEEEcCCCCC
Q 048039 152 NAVAIAALNSQNPG 165 (204)
Q Consensus 152 ~a~~i~~~~s~~pg 165 (204)
.-.+||....+|-.
T Consensus 252 ~YtFIWaMaGeN~~ 265 (278)
T COG3717 252 NYTFIWAMAGENQD 265 (278)
T ss_pred ceEEEEEecccccc
Confidence 78899988776643
No 122
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=68.44 E-value=7.3 Score=27.28 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=19.7
Q ss_pred eCCCcEEEECC-CCeEEEEeCCCCCEEE
Q 048039 129 LNKGDVFVFPM-GLLHYQRNVGKVNAVA 155 (204)
Q Consensus 129 L~~Gd~~~~p~-g~~H~~~N~g~~~a~~ 155 (204)
.++|++++|+. ...|...-.+....++
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~ 93 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRY 93 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEE
Confidence 88999999999 9999987663333333
No 123
>PLN02868 acyl-CoA thioesterase family protein
Probab=68.28 E-value=18 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=36.8
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEE
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVF 137 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~ 137 (204)
....+++|..+-.--.+ ...+++|++|++++...+.+ ++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~--ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEE--ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCC--CcEEEEEeCCCCEeeh
Confidence 34567777764332233 47899999999999887654 3445677899998863
No 124
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=66.69 E-value=35 Score=26.82 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=43.4
Q ss_pred CCCCccCCCCcEEEEEEeCcEEEEEEecCC-----------------CC-ceeEEEeCCCcEEEECCCCeEEEEeCCC
Q 048039 91 LNPPHTHPRASEIMTLLEGTLEVGFIGTAP-----------------DY-RHFSKILNKGDVFVFPMGLLHYQRNVGK 150 (204)
Q Consensus 91 ~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~-----------------~~-~~~~~~L~~Gd~~~~p~g~~H~~~N~g~ 150 (204)
...+-.|.+=..+-++++|+=.+++....+ +. .....+|.+|+.++|-+|.+|.-.....
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 344455655689999999998887765432 00 1257899999999999999998765544
No 125
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=64.91 E-value=87 Score=26.57 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=55.0
Q ss_pred EEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecC----CCCceeEEEeCCCcEEEEC
Q 048039 63 ATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTA----PDYRHFSKILNKGDVFVFP 138 (204)
Q Consensus 63 ~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~----~~~~~~~~~L~~Gd~~~~p 138 (204)
+..++. +.+++.- +.+..+++.+|.....-.-.+ +-.+++++|++++...+.. | .+.-.+.=++=|++++|
T Consensus 16 v~~vtp-~sagw~Y--VGF~~~~L~~Ges~~~~~~~~-E~clV~v~Gk~~vs~~g~~f~~iG-~R~SvFe~~p~~~vYvp 90 (270)
T COG3718 16 VQDVTP-ESAGWEY--VGFRLLRLAAGESATEETGDR-ERCLVLVTGKATVSAHGSTFGEIG-TRMSVFERKPPDSVYVP 90 (270)
T ss_pred eEEecC-CCCCcee--EEEEEEEccCCCcccccCCCc-eEEEEEEeeeEEEeeccchHhhcc-cccccccCCCCCeEEec
Confidence 444443 4445443 455667889998877666655 6778889999999765422 1 12123444567999999
Q ss_pred CCCeEEEEeCCC
Q 048039 139 MGLLHYQRNVGK 150 (204)
Q Consensus 139 ~g~~H~~~N~g~ 150 (204)
.|..-.+...++
T Consensus 91 ~g~~~~vtA~t~ 102 (270)
T COG3718 91 AGSAFSVTATTD 102 (270)
T ss_pred CCceEEEEeecc
Confidence 999988876544
No 126
>PHA00672 hypothetical protein
Probab=63.48 E-value=51 Score=25.22 Aligned_cols=73 Identities=10% Similarity=-0.088 Sum_probs=54.0
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIA 157 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~ 157 (204)
|+....++|+.|....--.|. -+.+++.+|.+++..+ + +...|+.=-++.-|+|.......- ++..+..
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~td-----g--e~~rl~g~~~i~~~aG~KragyAH--eDT~wt~ 114 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIG-----G--EAVELRGYHVIPASAGRKQAFVAH--ADTDLTM 114 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeC-----C--cEEEEecceeeecCCCcccceeee--ccceEEE
Confidence 788888999999876655663 4556999999999885 3 478888888888899988776654 3444544
Q ss_pred EEcC
Q 048039 158 ALNS 161 (204)
Q Consensus 158 ~~~s 161 (204)
++-+
T Consensus 115 ~h~s 118 (152)
T PHA00672 115 LFPS 118 (152)
T ss_pred Eecc
Confidence 4433
No 127
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=62.27 E-value=14 Score=32.60 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=32.6
Q ss_pred ceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcCCCCCcee
Q 048039 123 RHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNSQNPGTSS 168 (204)
Q Consensus 123 ~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s~~pg~~~ 168 (204)
+-.+-..++|+.+++|.|.-|.+.|...+-|+---..+.+|.+++-
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~Vw 306 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFVW 306 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCceee
Confidence 3357788999999999999999999855444333333455655543
No 128
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=61.56 E-value=37 Score=26.21 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=40.9
Q ss_pred cEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEe---CCCCCEEEEEEE
Q 048039 101 SEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRN---VGKVNAVAIAAL 159 (204)
Q Consensus 101 ~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N---~g~~~a~~i~~~ 159 (204)
.=+.+|++|+=++.++ + +.+...+|+.++.+.+++-...- ..++|...+.+-
T Consensus 24 p~i~~vlQG~K~~~~g-----~--~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 24 PSICIVLQGSKRVHLG-----D--QVFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred CeEEEEEeeeEEEEEC-----C--ceEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 5589999999999986 3 58999999999999999876543 345676666553
No 129
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=59.94 E-value=77 Score=25.33 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=48.4
Q ss_pred CCccCCCCcEEEEEEeC-cEEEEEEecCCC---CceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEE
Q 048039 93 PPHTHPRASEIMTLLEG-TLEVGFIGTAPD---YRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAAL 159 (204)
Q Consensus 93 ppH~H~~a~E~~yVl~G-~~~~~~~~~~~~---~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~ 159 (204)
.+-.|+..+|.+.-+.| ...+.++.+.++ +..+.+....|+.+.+-+|+-|...-.=+.+..++.+-
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEEe
Confidence 34467778999998999 766666654321 24678999999999999999998654444556666654
No 130
>PLN02288 mannose-6-phosphate isomerase
Probab=57.56 E-value=8.1 Score=34.96 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=19.7
Q ss_pred EEEeCCCcEEEECCCCeEEEE
Q 048039 126 SKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 126 ~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
...|+|||.+++|+|.+|.+.
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 689999999999999999975
No 131
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=56.37 E-value=86 Score=24.06 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=33.3
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEE-ecCC-----------------CCc-eeEEEeCCCcEEEECCCCeEEEE
Q 048039 92 NPPHTHPRASEIMTLLEGTLEVGFI-GTAP-----------------DYR-HFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 92 ~ppH~H~~a~E~~yVl~G~~~~~~~-~~~~-----------------~~~-~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
..+-.|.+-..+-|+++|+=++++. +... ++. .....|++|+.++|-++..|.-.
T Consensus 61 ~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 61 RRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp S-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred cceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 4566787778999999999888883 2210 111 12567999999999999999854
No 132
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.25 E-value=5 Score=33.28 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=32.7
Q ss_pred eEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEE
Q 048039 78 GLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGF 115 (204)
Q Consensus 78 g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~ 115 (204)
++++...-++|++++|+|-||+..-+.-++=|++.+-.
T Consensus 74 ~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVks 111 (236)
T KOG4281|consen 74 RFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKS 111 (236)
T ss_pred ceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeee
Confidence 57888889999999999999997777778889988854
No 133
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=55.51 E-value=51 Score=25.15 Aligned_cols=55 Identities=29% Similarity=0.282 Sum_probs=33.6
Q ss_pred CCCCccCCCCcEEEEEEeCcEEEEEEecCC------------------C-CceeEEEeCCCcEEEECCCCeEEE
Q 048039 91 LNPPHTHPRASEIMTLLEGTLEVGFIGTAP------------------D-YRHFSKILNKGDVFVFPMGLLHYQ 145 (204)
Q Consensus 91 ~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~------------------~-~~~~~~~L~~Gd~~~~p~g~~H~~ 145 (204)
...+-.|.+-..+-|+++|+=++++..... + .......|++|+.++|-++-.|.-
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~P 133 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKP 133 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCcccc
Confidence 344556766689999999998888853210 0 011345566666666666666653
No 134
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=55.15 E-value=44 Score=27.02 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=33.3
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEE
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVF 137 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~ 137 (204)
..+++|...-.--- ....+++|++|.+.+...+++| ++.....+.+||++-.
T Consensus 40 ~~~~kge~l~~~Gd-~~~~ly~v~~G~v~~~~~~~~G-~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGD-ELKSLYAIRSGTIKSYTITEQG-DEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCC-CcceEEEEeeceEEEEEECCCC-CEEEEEeccCCceecc
Confidence 35666664322222 2477999999999998877653 2223445589998854
No 135
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=53.79 E-value=16 Score=28.12 Aligned_cols=25 Identities=4% Similarity=-0.003 Sum_probs=22.4
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHhc
Q 048039 178 PVLNDEIISKTFLFDKKNVAILRSK 202 (204)
Q Consensus 178 p~~~~~vl~~~f~~~~~~v~~l~~~ 202 (204)
|.++++-||++|+++.+.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 4589999999999999999999863
No 136
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=53.69 E-value=45 Score=25.77 Aligned_cols=56 Identities=11% Similarity=0.031 Sum_probs=36.0
Q ss_pred EEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECC
Q 048039 82 VRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPM 139 (204)
Q Consensus 82 ~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~ 139 (204)
....+++|...-..--+. .-+++|++|.+.+.....+| .+.....+.+||.+-...
T Consensus 24 ~~~~~~~g~~l~~~g~~~-~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 24 EVRKLPKGEVLFTEGEEA-DSLYIILSGIVKLYANTEDG-REIILGFLGPGDFFGELA 79 (214)
T ss_pred eeEeeCCCCEEEcCCCcC-ceEEEEEEeEEEEEEECCCC-cEEEEEEecCCchhhhHH
Confidence 345566664433333332 55899999999999987653 222345688999886553
No 137
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=53.37 E-value=30 Score=26.89 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=26.6
Q ss_pred CcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEE
Q 048039 100 ASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFV 136 (204)
Q Consensus 100 a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~ 136 (204)
...+++|++|.+.+...+++| .+.....+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G-~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESG-EEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCC-cEeeeEEccCCCEee
Confidence 367899999999998876653 222356789999774
No 138
>COG1741 Pirin-related protein [General function prediction only]
Probab=53.14 E-value=1.5e+02 Score=25.54 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=25.8
Q ss_pred EEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEE
Q 048039 79 LSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVG 114 (204)
Q Consensus 79 ~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~ 114 (204)
+....+.+++|+..+.+ -.+..-++||++|++++.
T Consensus 173 ~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 173 LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 66777888898877666 223367899999988774
No 139
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=52.99 E-value=56 Score=26.46 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=34.2
Q ss_pred EEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEE
Q 048039 83 RVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFV 136 (204)
Q Consensus 83 ~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~ 136 (204)
...+++|...- +-......+++|++|.+.+.....+ ++.....+.+||++-
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~--~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQD--RETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCC--ceEEEEEeCCCchhh
Confidence 45667776543 2333457899999999999875432 444567788899764
No 140
>PF13994 PgaD: PgaD-like protein
Probab=52.13 E-value=18 Score=27.55 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhc
Q 048039 180 LNDEIISKTFLFDKKNVAILRSK 202 (204)
Q Consensus 180 ~~~~vl~~~f~~~~~~v~~l~~~ 202 (204)
++++-+|+.|++++++++++++.
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Confidence 89999999999999999999864
No 141
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=48.35 E-value=23 Score=27.85 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.4
Q ss_pred CCCCHHHHHHhcCCCHHHHHHHHhc
Q 048039 178 PVLNDEIISKTFLFDKKNVAILRSK 202 (204)
Q Consensus 178 p~~~~~vl~~~f~~~~~~v~~l~~~ 202 (204)
|.++++-+|+.|+++.+.++++++.
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhC
Confidence 4599999999999999999999864
No 142
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=47.64 E-value=11 Score=33.84 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=41.9
Q ss_pred CCCCCCCc---cCCCCcEEEEEEeCcEEEEEEecCCC-----------------------CceeEEEeCCCcEEEECCCC
Q 048039 88 PDGLNPPH---THPRASEIMTLLEGTLEVGFIGTAPD-----------------------YRHFSKILNKGDVFVFPMGL 141 (204)
Q Consensus 88 pg~~~ppH---~H~~a~E~~yVl~G~~~~~~~~~~~~-----------------------~~~~~~~L~~Gd~~~~p~g~ 141 (204)
.|...|.| +|. .-+-..+.|.=+.-+-.+..+ +...+..=++|+.+++|.|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 45567888 663 456667777766655543210 11223445899999999999
Q ss_pred eEEEEeCCCC
Q 048039 142 LHYQRNVGKV 151 (204)
Q Consensus 142 ~H~~~N~g~~ 151 (204)
.|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999875
No 143
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=43.61 E-value=76 Score=26.47 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred eEEEeCCCcEEEECCCCeEEEEeC
Q 048039 125 FSKILNKGDVFVFPMGLLHYQRNV 148 (204)
Q Consensus 125 ~~~~L~~Gd~~~~p~g~~H~~~N~ 148 (204)
....+++|++++||....|...-.
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pV 164 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPV 164 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeec
Confidence 578899999999999999998764
No 144
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=43.06 E-value=42 Score=26.90 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEE
Q 048039 103 IMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 103 ~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~ 158 (204)
++|+++|++.+.... ....|.+||.+.+.. .+...-.++..+.++.|
T Consensus 138 l~~~~~G~~~i~~~~-------~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~i 184 (184)
T PF05962_consen 138 LVYVLEGAWSITEGG-------NCISLSAGDLLLIDD--EEDLPLTGDGQLLWVSI 184 (184)
T ss_dssp EEEESSS-EEECCCE-------EEEEE-TT-EEEEES--EECEEEEEECCEEEEE-
T ss_pred EEEEeeCcEEEecCC-------CceEcCCCCEEEEeC--CCceEecCCeeEEEEeC
No 145
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=40.89 E-value=10 Score=37.43 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=37.0
Q ss_pred CCCCCCCCccCCCCcEEEEEEeCc---E--EEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCC
Q 048039 87 APDGLNPPHTHPRASEIMTLLEGT---L--EVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVG 149 (204)
Q Consensus 87 ~pg~~~ppH~H~~a~E~~yVl~G~---~--~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g 149 (204)
+-|..+++-.||-.++-+|+-++- + ++++. . -+..=..||.++||+|.+|.++|.-
T Consensus 763 E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe-----~--WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 763 EQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVE-----P--WTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred HhcCCCCcccCCCcccceeccHHHHHHHHHHhCCC-----c--cchhhcccceEEecCCCcHHhhhhh
Confidence 344445555677767777765542 1 22221 1 4566688999999999999999964
No 146
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=38.90 E-value=25 Score=22.97 Aligned_cols=23 Identities=9% Similarity=0.340 Sum_probs=17.2
Q ss_pred CHHHHHHhcCCCHHHHHHHHhcC
Q 048039 181 NDEIISKTFLFDKKNVAILRSKF 203 (204)
Q Consensus 181 ~~~vl~~~f~~~~~~v~~l~~~~ 203 (204)
.+.-|.+.+|++++++++||+.+
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 67788899999999999999764
No 147
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=38.08 E-value=39 Score=20.38 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=18.4
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHhcC
Q 048039 179 VLNDEIISKTFLFDKKNVAILRSKF 203 (204)
Q Consensus 179 ~~~~~vl~~~f~~~~~~v~~l~~~~ 203 (204)
+.+..-+|+.++++...|.+..+.|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT--
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 3788899999999999999998887
No 148
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=36.55 E-value=30 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=19.7
Q ss_pred CCCHHHHHHhcCCCHHHHHHHHhcC
Q 048039 179 VLNDEIISKTFLFDKKNVAILRSKF 203 (204)
Q Consensus 179 ~~~~~vl~~~f~~~~~~v~~l~~~~ 203 (204)
|++|..+|+..++++++|+++|+..
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~ 96 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEH 96 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHc
Confidence 4999999999999999999998763
No 149
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=36.41 E-value=61 Score=24.87 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=20.6
Q ss_pred eEEEeCCCcEEEECCCCeEEEE-eCCCC
Q 048039 125 FSKILNKGDVFVFPMGLLHYQR-NVGKV 151 (204)
Q Consensus 125 ~~~~L~~Gd~~~~p~g~~H~~~-N~g~~ 151 (204)
....+++||++++...++|.-. |.++.
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred EEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 5778999999999999999854 55443
No 150
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=33.88 E-value=50 Score=28.00 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.1
Q ss_pred EEEeCCCcEEEECCCCeEEE-EeCCC-CCEEEEEEEcCC
Q 048039 126 SKILNKGDVFVFPMGLLHYQ-RNVGK-VNAVAIAALNSQ 162 (204)
Q Consensus 126 ~~~L~~Gd~~~~p~g~~H~~-~N~g~-~~a~~i~~~~s~ 162 (204)
...+++||+++|...++|.- .|.++ ....++..|++.
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 46789999999999999975 56554 345555666643
No 151
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.72 E-value=62 Score=31.78 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=33.3
Q ss_pred ECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEE
Q 048039 86 FAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVF 135 (204)
Q Consensus 86 i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~ 135 (204)
+.||..+-..=.+- .|+++|++|.+.+.-.+.+ +......|++||.+
T Consensus 447 f~pge~iireGd~v-~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 447 FTPGEYIIREGDPV-TDMYFIVRGSLESITTDGG--GFFVVAILGPGDFF 493 (727)
T ss_pred cCCCCeEEecCCcc-ceeEEEEeeeEEEEEccCC--ceEEEEEecCCCcc
Confidence 45555554444554 9999999999987654322 33468899999998
No 152
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=32.92 E-value=67 Score=30.99 Aligned_cols=46 Identities=35% Similarity=0.416 Sum_probs=32.9
Q ss_pred EEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEE
Q 048039 83 RVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVF 135 (204)
Q Consensus 83 ~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~ 135 (204)
...-.||.. -.|.-....-+.+|++|++++--+| + ....|.+||+|
T Consensus 573 ~~H~APGDL-lYHtGESvDaLcFvVsGSLEVIQDD-----E-VVAILGKGDVF 618 (971)
T KOG0501|consen 573 TNHCAPGDL-LYHTGESVDALCFVVSGSLEVIQDD-----E-VVAILGKGDVF 618 (971)
T ss_pred hccCCCcce-eeecCCccceEEEEEecceEEeecC-----c-EEEEeecCccc
Confidence 344455543 2455555678899999999997653 3 68899999998
No 153
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=32.68 E-value=35 Score=30.50 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.8
Q ss_pred EEEeCCCcEEEECCCCeEEEEe
Q 048039 126 SKILNKGDVFVFPMGLLHYQRN 147 (204)
Q Consensus 126 ~~~L~~Gd~~~~p~g~~H~~~N 147 (204)
...|++|+.+++|+|.+|.+..
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 5699999999999999998764
No 154
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=32.47 E-value=2.5e+02 Score=25.04 Aligned_cols=85 Identities=16% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCc-eeEEEeCCCcEE
Q 048039 57 NPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYR-HFSKILNKGDVF 135 (204)
Q Consensus 57 ~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~-~~~~~L~~Gd~~ 135 (204)
...|..+..++... ++.-..+-|++++..-+..-+..-+...+-.+++..-++.+..++ ++ .-...|++||-+
T Consensus 249 L~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~d--G~~vsVt~Lk~GD~V 322 (344)
T PRK02290 249 LRSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPD--GKPVSVVDLKPGDEV 322 (344)
T ss_pred hcCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEE
Confidence 45566666665332 233567788888887765555443558999999999999999776 33 347899999955
Q ss_pred --EECCCCeEEEEe
Q 048039 136 --VFPMGLLHYQRN 147 (204)
Q Consensus 136 --~~p~g~~H~~~N 147 (204)
+++.+--|+-..
T Consensus 323 L~~~~~~~RHfG~~ 336 (344)
T PRK02290 323 LGYLEEAARHFGMA 336 (344)
T ss_pred EEEecCCcccccce
Confidence 456666676543
No 155
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=31.91 E-value=94 Score=30.69 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=31.6
Q ss_pred EEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEE
Q 048039 83 RVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVF 135 (204)
Q Consensus 83 ~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~ 135 (204)
...+.||..+-..-.. ..++++|++|++.+.... .+ ++.....+++||.+
T Consensus 399 ~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~-~~-~e~~l~~l~~Gd~F 448 (823)
T PLN03192 399 AEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSE-GE-KERVVGTLGCGDIF 448 (823)
T ss_pred eeeeCCCCEEEECCCC-CceEEEEEecEEEEEEec-CC-cceeeEEccCCCEe
Confidence 3456777644222222 478999999999986432 21 22245678999977
No 156
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=29.71 E-value=4e+02 Score=23.57 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=42.9
Q ss_pred ccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEeCCCCCEEEEEEEcC
Q 048039 95 HTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRNVGKVNAVAIAALNS 161 (204)
Q Consensus 95 H~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N~g~~~a~~i~~~~s 161 (204)
.+..+..=+++--+|.+.+... . + ...+.+++..+||+|+...+.-.|.....++.++..
T Consensus 150 fyNsDGDFLiVPQ~G~L~I~TE--f--G---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~ 209 (446)
T KOG1417|consen 150 FYNSDGDFLIVPQQGRLWITTE--F--G---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGA 209 (446)
T ss_pred eecCCCCEEEecccCcEEEEee--c--c---ceeecccceEEeecccEEEEecCCCCcceEEEEecc
Confidence 3444434444445677666542 1 2 578899999999999999987778888888888863
No 157
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=28.90 E-value=72 Score=18.97 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=15.3
Q ss_pred CCCHHHHHHhcC-CCHHHHHHH
Q 048039 179 VLNDEIISKTFL-FDKKNVAIL 199 (204)
Q Consensus 179 ~~~~~vl~~~f~-~~~~~v~~l 199 (204)
.+|+|++.+.|. ++.+++-++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 499999999998 677776655
No 158
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.07 E-value=1.1e+02 Score=28.69 Aligned_cols=47 Identities=23% Similarity=0.195 Sum_probs=31.6
Q ss_pred EEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEE
Q 048039 84 VDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVF 135 (204)
Q Consensus 84 ~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~ 135 (204)
..+.||..+-.--- -+.|+++|.+|.+.+--+| +..+-.+|++|+++
T Consensus 333 qvfSPgDyICrKGd-vgkEMyIVk~G~L~Vv~dD----g~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 333 QVFSPGDYICRKGD-VGKEMYIVKEGKLAVVADD----GVTVFVTLKAGSVF 379 (536)
T ss_pred eeeCCCCeEEecCc-ccceEEEEEccEEEEEecC----CcEEEEEecCCcee
Confidence 34455554322222 3599999999999985543 44478899999877
No 159
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=26.03 E-value=54 Score=18.69 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=17.8
Q ss_pred CCHHHHHHhcCCCHHHHHHHHhcC
Q 048039 180 LNDEIISKTFLFDKKNVAILRSKF 203 (204)
Q Consensus 180 ~~~~vl~~~f~~~~~~v~~l~~~~ 203 (204)
+..+-+|..+|++.+.|.++.++|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l 26 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKL 26 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHH
Confidence 566788999999999999887664
No 160
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=24.78 E-value=71 Score=18.75 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=15.6
Q ss_pred CCHHHHHHhcCCCHHHHHHHH
Q 048039 180 LNDEIISKTFLFDKKNVAILR 200 (204)
Q Consensus 180 ~~~~vl~~~f~~~~~~v~~l~ 200 (204)
++++-..+.|+++.++..+|.
T Consensus 2 Lsd~dF~~vFgm~~~eF~~lP 22 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEFYKLP 22 (36)
T ss_dssp S-HHHHHHHHSS-HHHHHHS-
T ss_pred cCHHHHHHHHCCCHHHHHHCh
Confidence 567888899999999988774
No 161
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=24.76 E-value=1.9e+02 Score=22.04 Aligned_cols=66 Identities=12% Similarity=0.246 Sum_probs=42.4
Q ss_pred cCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEE----eCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEE
Q 048039 71 IPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLL----EGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQR 146 (204)
Q Consensus 71 ~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl----~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~ 146 (204)
-|+++. +.+..+.+++|....-- . ..|+...+ .|.+.+++.++ +-..++|||++.+-.|..-.++
T Consensus 11 ~P~~kN--~~v~fIvl~~g~~tkTk--d-g~~v~~~kVaD~TgsI~isvW~e------~~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 11 KPGLKN--INVTFIVLEYGRATKTK--D-GHEVRSCKVADETGSINISVWDE------EGCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred Chhhhc--ceEEEEEEeeceeeecc--C-CCEEEEEEEecccceEEEEEecC------cCcccCCccEEEecccchhhhc
Confidence 466664 45555666776543322 2 24555544 46777887752 3578999999999999877665
Q ss_pred e
Q 048039 147 N 147 (204)
Q Consensus 147 N 147 (204)
+
T Consensus 80 g 80 (134)
T KOG3416|consen 80 G 80 (134)
T ss_pred C
Confidence 4
No 162
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=24.66 E-value=4e+02 Score=23.91 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=57.2
Q ss_pred CCCCceEEEEeccccCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEE-
Q 048039 57 NPMGSKATPVYVQQIPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVF- 135 (204)
Q Consensus 57 ~~~g~~~~~~~~~~~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~- 135 (204)
...|..+..++... ++.-..+-|++++..-+..-....+..++-.+++..-++.+..++| ...-...|++||-+
T Consensus 259 L~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G-~~vsVt~Lk~GD~vL 333 (354)
T PF01959_consen 259 LRSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDG-EPVSVTELKPGDEVL 333 (354)
T ss_pred hcCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCC-CEeeeeecCCCCEEE
Confidence 44566666554322 2235677888888776654443335589999999999999988763 22346889999955
Q ss_pred -EECCCCeEEEEeC
Q 048039 136 -VFPMGLLHYQRNV 148 (204)
Q Consensus 136 -~~p~g~~H~~~N~ 148 (204)
++..+--|+-...
T Consensus 334 ~~~~~~~RHfG~~I 347 (354)
T PF01959_consen 334 VYLEEAGRHFGMKI 347 (354)
T ss_pred EEecCCCcccceEe
Confidence 5566667765443
No 163
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=23.75 E-value=4.6e+02 Score=22.34 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=43.1
Q ss_pred CCCCCCCCccCCCCcEEEEEEe-CcEEEEEEecCCCCceeEEEeCCCcEEEECCCC--eEEEEeCCCCCEEEEEE
Q 048039 87 APDGLNPPHTHPRASEIMTLLE-GTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGL--LHYQRNVGKVNAVAIAA 158 (204)
Q Consensus 87 ~pg~~~ppH~H~~a~E~~yVl~-G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~--~H~~~N~g~~~a~~i~~ 158 (204)
..|....-|+-....|+..|-= |..++.++ + ++++|...|.+++-.|. +-+-...+..|++++..
T Consensus 62 ~~~~~~~~~~FLeRRElgiINIG~~G~i~v~-----g--~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~ 129 (278)
T COG3717 62 EVGTQLGVSYFLERRELGIINIGGPGTITVD-----G--QEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYV 129 (278)
T ss_pred cccccccccccceeeeeeEEeeCCCceEEEC-----C--EEEEeccccEEEEecCccceEEeccCCCCcceEEEe
Confidence 3344455555544578877755 55777774 4 69999999999998884 33444455677777654
No 164
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=23.61 E-value=1.8e+02 Score=18.69 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=18.8
Q ss_pred EEEEEecCCCCceeEEEeCCCcEEEECCCCeEE
Q 048039 112 EVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHY 144 (204)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~ 144 (204)
++++.|+- ++..+.+|++|..+..-.|.++.
T Consensus 11 rVQlTD~K--gr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPK--GRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT----EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCC--CCeeeEEECCCCeEEcCccccch
Confidence 35666654 56678999999999888876653
No 165
>smart00153 VHP Villin headpiece domain.
Probab=22.87 E-value=88 Score=18.29 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.5
Q ss_pred CCHHHHHHhcCCCHHHHHHHH
Q 048039 180 LNDEIISKTFLFDKKNVAILR 200 (204)
Q Consensus 180 ~~~~vl~~~f~~~~~~v~~l~ 200 (204)
++++-..+.||+++++..+|.
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP 22 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLP 22 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCc
Confidence 567888899999999888764
No 166
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=22.53 E-value=2e+02 Score=23.03 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=32.8
Q ss_pred EEEEEEeCcEEEEEEecCCCCceeEEEeCCCcEEEECCCCeEEEEe
Q 048039 102 EIMTLLEGTLEVGFIGTAPDYRHFSKILNKGDVFVFPMGLLHYQRN 147 (204)
Q Consensus 102 E~~yVl~G~~~~~~~~~~~~~~~~~~~L~~Gd~~~~p~g~~H~~~N 147 (204)
=+..-++|+..+.+... +......|.+|+-+++.++..-.+..
T Consensus 131 ~~~~~l~G~G~v~l~~~---G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSGY---GAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEEESSCEEEEEEC---CSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred cEEEEEEEEEEEEEEeC---CcEEEEEccCCceEEEcCCCEEEECC
Confidence 34566889999888764 56788999999999999888777754
No 167
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=22.32 E-value=2.1e+02 Score=22.90 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=32.5
Q ss_pred EEEeCCCcEEEEC---C---CCeEEE-EeCCCCCEEEEEEEcCCCCCc
Q 048039 126 SKILNKGDVFVFP---M---GLLHYQ-RNVGKVNAVAIAALNSQNPGT 166 (204)
Q Consensus 126 ~~~L~~Gd~~~~p---~---g~~H~~-~N~g~~~a~~i~~~~s~~pg~ 166 (204)
+.+|.+||+.-+- + |.+|.+ .|.|.++-.+++++....|-.
T Consensus 130 eV~lSpgdihsv~n~~sdrs~aiHvy~a~ig~~~r~~fsi~ge~~Pk~ 177 (191)
T COG5553 130 EVHLSPGDIHSVANTGSDRSGAIHVYLADIGGTDRQLFSILGENRPKE 177 (191)
T ss_pred eEeeCCCCeeeecccCCCccceEEEEecccCCCcceeeeecccCCCCC
Confidence 4559999999886 3 478865 568999999999998887744
No 168
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=22.23 E-value=3.1e+02 Score=19.86 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=32.5
Q ss_pred CCcEEEEEEeCcEEEEEEecCCCCcee-EEEeCCCcEEEECCCCeEEEEeCCCC
Q 048039 99 RASEIMTLLEGTLEVGFIGTAPDYRHF-SKILNKGDVFVFPMGLLHYQRNVGKV 151 (204)
Q Consensus 99 ~a~E~~yVl~G~~~~~~~~~~~~~~~~-~~~L~~Gd~~~~p~g~~H~~~N~g~~ 151 (204)
+.---+-|++|.+.+.--+..++-..+ .....+ +.-++|+-..|++...++.
T Consensus 35 G~w~kLsVl~G~vk~~~~~ee~~~~~e~~~~~ea-~~~~~~PQ~WHrVea~tDD 87 (99)
T COG3615 35 GTWGKLSVLKGAVKFLGLAEEGETEPEHVFSIEA-QFPVFPPQAWHRVEAMTDD 87 (99)
T ss_pred CceeEEEEEeceeEEEEEcCCCCccceEEEeecC-CCCccChhHeeeeeecccc
Confidence 334447899999998665543211112 333344 6777899999999865543
No 169
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=20.82 E-value=1.2e+02 Score=27.05 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=47.5
Q ss_pred cCCCCCceEEEEEEEECCCCCCCCccCCCCcEEEEEEeCcEEEEEEecCCCC----------------------------
Q 048039 71 IPGLNTLGLSMVRVDFAPDGLNPPHTHPRASEIMTLLEGTLEVGFIGTAPDY---------------------------- 122 (204)
Q Consensus 71 ~P~l~~~g~s~~~~~i~pg~~~ppH~H~~a~E~~yVl~G~~~~~~~~~~~~~---------------------------- 122 (204)
+|+.++.++.+.....+.|...|.|.-+. .-++.-+-|+.++.+.-+...+
T Consensus 242 ~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~~ 320 (355)
T KOG2132|consen 242 FPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPKF 320 (355)
T ss_pred cCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhHH
Confidence 34444333444434444588888886665 6677778888877765433100
Q ss_pred ---ceeEEEeCCCcEEEECCCCeEEEEe
Q 048039 123 ---RHFSKILNKGDVFVFPMGLLHYQRN 147 (204)
Q Consensus 123 ---~~~~~~L~~Gd~~~~p~g~~H~~~N 147 (204)
+.....|++||++++|+..-|+.+.
T Consensus 321 ~k~~~l~~lL~pGe~L~iP~kwwhyvrs 348 (355)
T KOG2132|consen 321 AKARFLDCLLEPGEALFIPPKWWHYVRS 348 (355)
T ss_pred HHHHHHHHhcCCchhccccHHHhhhhhh
Confidence 1123568889999999998888764
Done!