Query 048040
Match_columns 178
No_of_seqs 116 out of 1308
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 1.6E-18 3.6E-23 149.2 13.8 161 2-175 51-235 (968)
2 PLN00113 leucine-rich repeat r 99.6 1.1E-15 2.5E-20 131.7 10.6 133 36-172 147-280 (968)
3 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 113.9 -3.4 140 21-175 33-195 (264)
4 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.5E-21 109.2 -4.9 149 21-172 56-219 (264)
5 KOG4194 Membrane glycoprotein 99.5 4.6E-15 1E-19 117.5 2.1 154 21-177 269-441 (873)
6 KOG4194 Membrane glycoprotein 99.5 1.9E-14 4.2E-19 114.1 2.9 156 16-175 168-340 (873)
7 PLN03150 hypothetical protein; 99.5 8.4E-13 1.8E-17 109.0 11.7 126 2-138 391-527 (623)
8 KOG0472 Leucine-rich repeat pr 99.4 6.4E-14 1.4E-18 106.8 3.5 143 21-170 388-545 (565)
9 PF14580 LRR_9: Leucine-rich r 99.4 8.8E-13 1.9E-17 91.8 5.5 126 21-159 19-147 (175)
10 KOG0444 Cytoskeletal regulator 99.3 5.2E-13 1.1E-17 107.2 1.4 83 21-113 103-185 (1255)
11 KOG1259 Nischarin, modulator o 99.3 4.1E-13 8.8E-18 99.3 -0.4 131 21-167 284-414 (490)
12 KOG0444 Cytoskeletal regulator 99.2 2E-12 4.3E-17 104.0 1.1 132 21-165 7-139 (1255)
13 PF14580 LRR_9: Leucine-rich r 99.2 1.2E-11 2.6E-16 86.1 4.5 112 49-166 15-127 (175)
14 KOG0618 Serine/threonine phosp 99.2 7E-12 1.5E-16 103.9 3.0 123 35-163 365-487 (1081)
15 cd00116 LRR_RI Leucine-rich re 99.2 7.9E-11 1.7E-15 89.6 7.3 11 21-31 81-91 (319)
16 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-10 3.8E-15 87.7 8.3 121 47-167 159-293 (319)
17 KOG0472 Leucine-rich repeat pr 99.1 2.1E-12 4.5E-17 98.7 -2.9 118 52-177 182-299 (565)
18 KOG4237 Extracellular matrix p 99.0 1.5E-10 3.4E-15 88.3 3.3 65 21-94 67-132 (498)
19 PRK15387 E3 ubiquitin-protein 99.0 8.8E-10 1.9E-14 92.3 6.6 43 127-172 423-465 (788)
20 PLN03150 hypothetical protein; 99.0 5.4E-09 1.2E-13 86.6 10.3 108 55-166 420-529 (623)
21 PLN03210 Resistant to P. syrin 98.9 4.3E-09 9.4E-14 92.7 9.5 62 49-112 653-715 (1153)
22 PLN03210 Resistant to P. syrin 98.9 1.2E-08 2.6E-13 89.9 11.7 113 52-173 777-890 (1153)
23 PRK15370 E3 ubiquitin-protein 98.9 4.7E-09 1E-13 88.1 6.9 101 54-167 263-382 (754)
24 PRK15370 E3 ubiquitin-protein 98.9 9.3E-09 2E-13 86.4 7.9 99 22-141 200-298 (754)
25 KOG0618 Serine/threonine phosp 98.9 1.3E-09 2.8E-14 90.8 2.8 128 21-162 383-510 (1081)
26 KOG0532 Leucine-rich repeat (L 98.8 2.6E-10 5.7E-15 90.6 -1.6 132 23-173 123-254 (722)
27 KOG3207 Beta-tubulin folding c 98.8 9E-10 2E-14 85.0 0.3 115 51-165 195-314 (505)
28 KOG1859 Leucine-rich repeat pr 98.8 1E-10 2.2E-15 95.3 -5.1 127 22-165 165-292 (1096)
29 KOG4237 Extracellular matrix p 98.7 1.9E-09 4.2E-14 82.4 0.3 153 7-174 28-186 (498)
30 PF13855 LRR_8: Leucine rich r 98.7 8.8E-09 1.9E-13 59.4 3.0 56 55-111 3-59 (61)
31 PRK15387 E3 ubiquitin-protein 98.7 7.5E-08 1.6E-12 81.0 9.3 101 53-166 242-356 (788)
32 KOG0532 Leucine-rich repeat (L 98.7 2E-10 4.4E-15 91.2 -5.6 122 44-175 112-233 (722)
33 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.3E-13 57.9 3.0 60 21-89 1-60 (61)
34 COG4886 Leucine-rich repeat (L 98.6 3.4E-08 7.4E-13 77.6 3.9 134 22-172 141-297 (394)
35 KOG1259 Nischarin, modulator o 98.6 1.5E-08 3.3E-13 75.4 1.4 105 53-166 284-388 (490)
36 COG4886 Leucine-rich repeat (L 98.6 3.7E-08 8E-13 77.4 3.4 134 21-167 116-270 (394)
37 KOG4658 Apoptotic ATPase [Sign 98.5 1.6E-07 3.4E-12 80.4 6.0 112 46-159 564-675 (889)
38 KOG3665 ZYG-1-like serine/thre 98.5 1.5E-07 3.4E-12 78.5 5.6 138 21-166 122-264 (699)
39 KOG1909 Ran GTPase-activating 98.5 4.3E-07 9.3E-12 68.7 7.3 145 21-165 30-226 (382)
40 KOG1909 Ran GTPase-activating 98.5 2.6E-07 5.7E-12 69.8 5.8 142 20-170 91-259 (382)
41 KOG3207 Beta-tubulin folding c 98.4 1.4E-07 3E-12 73.2 1.2 119 46-166 215-340 (505)
42 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.4E-11 47.0 3.6 36 127-165 2-37 (44)
43 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.5E-12 62.3 -0.3 90 49-142 49-139 (177)
44 KOG2120 SCF ubiquitin ligase, 98.2 2.4E-07 5.2E-12 69.0 -0.0 148 21-171 185-355 (419)
45 KOG4658 Apoptotic ATPase [Sign 98.2 2.6E-06 5.7E-11 73.1 6.1 137 20-166 570-731 (889)
46 KOG1644 U2-associated snRNP A' 98.2 2.3E-06 5E-11 60.4 4.1 87 49-136 60-150 (233)
47 KOG0531 Protein phosphatase 1, 98.2 6.2E-07 1.3E-11 71.1 1.1 109 49-165 91-199 (414)
48 KOG2982 Uncharacterized conser 98.1 1.6E-06 3.4E-11 64.7 2.7 150 10-168 85-265 (418)
49 KOG1644 U2-associated snRNP A' 98.1 2.2E-06 4.8E-11 60.5 3.2 107 52-161 41-149 (233)
50 PF12799 LRR_4: Leucine Rich r 98.1 6.9E-06 1.5E-10 43.9 4.2 32 55-88 3-34 (44)
51 KOG1859 Leucine-rich repeat pr 98.1 1.4E-07 2.9E-12 77.6 -3.6 109 21-142 187-295 (1096)
52 KOG0531 Protein phosphatase 1, 98.1 7.5E-07 1.6E-11 70.6 -0.3 111 50-169 69-179 (414)
53 KOG4579 Leucine-rich repeat (L 98.0 7.3E-07 1.6E-11 59.3 -0.9 88 20-117 52-139 (177)
54 COG5238 RNA1 Ran GTPase-activa 97.9 0.00014 3.1E-09 53.9 9.3 118 47-165 86-227 (388)
55 COG5238 RNA1 Ran GTPase-activa 97.9 7.2E-05 1.6E-09 55.4 7.3 141 20-169 91-259 (388)
56 KOG3665 ZYG-1-like serine/thre 97.9 1.4E-05 3E-10 67.0 3.8 109 53-165 122-233 (699)
57 KOG2739 Leucine-rich acidic nu 97.8 1.2E-05 2.5E-10 58.8 2.1 112 44-158 34-149 (260)
58 PRK15386 type III secretion pr 97.7 0.00014 3E-09 57.2 7.0 60 21-95 52-112 (426)
59 KOG2120 SCF ubiquitin ligase, 97.6 9.2E-06 2E-10 60.8 -0.6 139 16-162 229-373 (419)
60 KOG2739 Leucine-rich acidic nu 97.4 0.00014 3.1E-09 53.2 3.0 117 16-135 28-152 (260)
61 KOG2982 Uncharacterized conser 97.4 0.00012 2.6E-09 54.9 2.3 87 51-137 69-157 (418)
62 KOG2123 Uncharacterized conser 97.3 3E-05 6.4E-10 57.6 -1.7 84 51-138 17-100 (388)
63 PRK15386 type III secretion pr 97.2 0.0042 9.2E-08 49.1 9.3 55 50-111 49-104 (426)
64 KOG2123 Uncharacterized conser 97.0 5.6E-05 1.2E-09 56.2 -2.5 81 49-132 37-123 (388)
65 PF00560 LRR_1: Leucine Rich R 95.9 0.0022 4.8E-08 28.6 0.2 20 154-174 2-21 (22)
66 PF13504 LRR_7: Leucine rich r 95.2 0.016 3.5E-07 24.1 1.6 13 127-139 2-14 (17)
67 PF13306 LRR_5: Leucine rich r 95.1 0.051 1.1E-06 35.4 4.5 104 49-161 8-112 (129)
68 KOG1947 Leucine rich repeat pr 94.5 0.058 1.3E-06 43.3 4.3 112 52-164 187-307 (482)
69 PF13306 LRR_5: Leucine rich r 94.3 0.19 4.1E-06 32.7 5.8 116 21-154 12-128 (129)
70 KOG1947 Leucine rich repeat pr 94.2 0.06 1.3E-06 43.2 3.8 115 45-159 206-328 (482)
71 KOG3864 Uncharacterized conser 93.9 0.017 3.7E-07 41.2 0.1 87 54-141 102-191 (221)
72 smart00369 LRR_TYP Leucine-ric 93.8 0.056 1.2E-06 24.9 1.8 20 152-171 2-21 (26)
73 smart00370 LRR Leucine-rich re 93.8 0.056 1.2E-06 24.9 1.8 20 152-171 2-21 (26)
74 KOG3864 Uncharacterized conser 93.7 0.018 3.9E-07 41.0 -0.1 78 80-159 103-183 (221)
75 PF08263 LRRNT_2: Leucine rich 92.1 0.072 1.6E-06 28.0 0.9 12 6-17 32-43 (43)
76 PF13516 LRR_6: Leucine Rich r 90.0 0.14 3.1E-06 23.0 0.6 16 126-141 2-17 (24)
77 smart00365 LRR_SD22 Leucine-ri 89.1 0.37 7.9E-06 22.4 1.7 17 126-142 2-18 (26)
78 KOG3763 mRNA export factor TAP 86.1 0.6 1.3E-05 38.3 2.3 62 76-140 216-284 (585)
79 KOG0473 Leucine-rich repeat pr 85.2 0.018 3.9E-07 42.2 -5.9 83 20-113 41-123 (326)
80 KOG4341 F-box protein containi 85.1 1.2 2.6E-05 35.5 3.5 13 52-64 319-331 (483)
81 smart00368 LRR_RI Leucine rich 83.6 0.9 1.9E-05 21.3 1.5 16 126-141 2-17 (28)
82 KOG3763 mRNA export factor TAP 83.3 0.81 1.8E-05 37.6 2.0 38 99-136 216-254 (585)
83 KOG4341 F-box protein containi 82.3 2.9 6.3E-05 33.5 4.6 145 21-175 320-472 (483)
84 smart00364 LRR_BAC Leucine-ric 80.2 1.3 2.8E-05 20.6 1.2 17 127-143 3-19 (26)
85 KOG4308 LRR-containing protein 78.9 0.083 1.8E-06 43.0 -5.0 39 127-165 263-303 (478)
86 KOG0473 Leucine-rich repeat pr 78.1 0.042 9E-07 40.3 -6.1 88 48-139 37-124 (326)
87 KOG4308 LRR-containing protein 77.8 0.16 3.5E-06 41.3 -3.6 141 21-169 115-279 (478)
88 smart00367 LRR_CC Leucine-rich 51.4 11 0.00023 17.0 1.2 9 103-111 4-12 (26)
89 TIGR00864 PCC polycystin catio 46.4 21 0.00047 35.5 3.2 31 84-114 1-32 (2740)
90 PF07723 LRR_2: Leucine Rich R 45.8 15 0.00032 16.8 1.1 13 128-140 2-14 (26)
91 TIGR00864 PCC polycystin catio 21.5 73 0.0016 32.2 2.3 30 37-66 3-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=1.6e-18 Score=149.17 Aligned_cols=161 Identities=30% Similarity=0.444 Sum_probs=101.8
Q ss_pred CCcCCCceeeeeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhc-ccC--
Q 048040 2 EDEKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG-SLS-- 78 (178)
Q Consensus 2 ~~~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~-- 78 (178)
|+...++|.|.|+.|.. .++++.|+++++ .+.+.+++.+..+++|+.|++++|.+.+. +|..+. .+.
T Consensus 51 w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~--------~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L 120 (968)
T PLN00113 51 WNSSADVCLWQGITCNN-SSRVVSIDLSGK--------NISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSL 120 (968)
T ss_pred CCCCCCCCcCcceecCC-CCcEEEEEecCC--------CccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCC
Confidence 33567899999999974 568999999998 44555555555555555555555555443 343322 444
Q ss_pred --------------------CCcEEeccCCCC-CccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC
Q 048040 79 --------------------KLRYLNLSCGAP-LEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN 137 (178)
Q Consensus 79 --------------------~L~~L~l~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (178)
+|++|++++|.+ +..|..++.+++|+.|++++|.+.+. .+..++++++|++|++++|.
T Consensus 121 ~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred CEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCC
Confidence 455555555522 24455666677777777777765332 23446667777777777777
Q ss_pred CCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 138 LTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 138 i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+++.. +..++.+++|++|++++|.+.+.+|..++.+
T Consensus 200 l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 200 LVGQI--PRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CcCcC--ChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 66542 3466777777777777777777777665544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=1.1e-15 Score=131.72 Aligned_cols=133 Identities=29% Similarity=0.399 Sum_probs=77.0
Q ss_pred cccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCccc
Q 048040 36 ARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHLF 114 (178)
Q Consensus 36 ~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~ 114 (178)
+++|.+.+.+|..+..+.+|++|++++|.+.+. .|..+..+++|++|++++| ..+.+|..+..+++|+.|++++|++.
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 344466666666677777777777777776654 6666666667777777666 33345566666666666666666653
Q ss_pred cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040 115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI 172 (178)
Q Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 172 (178)
+. .+..++.+++|++|++++|.+++.. +..++++++|+.|++++|.+.+.+|..+
T Consensus 226 ~~-~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l 280 (968)
T PLN00113 226 GE-IPYEIGGLTSLNHLDLVYNNLTGPI--PSSLGNLKNLQYLFLYQNKLSGPIPPSI 280 (968)
T ss_pred Cc-CChhHhcCCCCCEEECcCceecccc--ChhHhCCCCCCEEECcCCeeeccCchhH
Confidence 22 2334555566666666666554432 2244555555555555555554444443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=113.87 Aligned_cols=140 Identities=26% Similarity=0.380 Sum_probs=98.0
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|.+++| .++ .+|+.+..+.+|+.|++.+|.+.. +|..++.++.|+.|+++.|.+..+|.+|+.+
T Consensus 33 s~ITrLtLSHN--------Kl~-~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 33 SNITRLTLSHN--------KLT-VVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhhhhhhcccC--------cee-ecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCC
Confidence 56788899998 454 455556677777777777777766 6677777777777777777666667777777
Q ss_pred CCCcEEEeeCCccccCC-----------------------chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040 101 SGLEYLNLENSHLFSVG-----------------------SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~-----------------------~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 157 (178)
+.|+.|++.+|++.... .+..++++++|++|.++.|.+...|. .++.+..|++|
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk---eig~lt~lrel 178 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK---EIGDLTRLREL 178 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH---HHHHHHHHHHH
Confidence 77777777776662222 23446777788888888887766653 77888888888
Q ss_pred EecCCCCCCCCCcccccc
Q 048040 158 VLRSCALPPINPSFICGW 175 (178)
Q Consensus 158 ~l~~n~~~~~~~~~~~~l 175 (178)
++++|+++ .+|+.++.+
T Consensus 179 hiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANL 195 (264)
T ss_pred hcccceee-ecChhhhhh
Confidence 88888877 566666554
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.2e-16 Score=109.16 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=102.6
Q ss_pred CCeeEEEecCCccc---------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040 21 GHVKVLNLRTSDYE---------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL 85 (178)
Q Consensus 21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 85 (178)
..++.|++.+|.++ ++.+|++. .+|..|+.++.|++|++.+|.+....+|.-|..|..|+.|++
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl 134 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL 134 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence 45677788887553 22333333 345556666666666666666655445666666666666666
Q ss_pred cCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 86 SCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+.|-+..+|..++++++|+.|.+..|.+.+. +..++.++.|++|++.+|.++-.|...+.+.-..+-+++.+.+|+..
T Consensus 135 ~dndfe~lp~dvg~lt~lqil~lrdndll~l--pkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 135 GDNDFEILPPDVGKLTNLQILSLRDNDLLSL--PKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred cCCCcccCChhhhhhcceeEEeeccCchhhC--cHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 6665566788888999999999999998555 47799999999999999999988653334443445567788888877
Q ss_pred CCCCccc
Q 048040 166 PINPSFI 172 (178)
Q Consensus 166 ~~~~~~~ 172 (178)
..+++.|
T Consensus 213 ~pIaeQf 219 (264)
T KOG0617|consen 213 NPIAEQF 219 (264)
T ss_pred ChHHHHH
Confidence 6666543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.51 E-value=4.6e-15 Score=117.53 Aligned_cols=154 Identities=23% Similarity=0.217 Sum_probs=125.1
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..+++|+|..|.++ ++++|.+...-++.++.-.+|++|+|+.|.++.. .++.|..+..|+.|.
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l-~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL-DEGSFRVLSQLEELN 347 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC-ChhHHHHHHHhhhhc
Confidence 56788888888774 6677788888888888888999999999998885 567888888899999
Q ss_pred ccCCCCCccch-hccCCCCCcEEEeeCCccccC--CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecC
Q 048040 85 LSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSV--GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRS 161 (178)
Q Consensus 85 l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~ 161 (178)
++.|.+..+.+ .|..+.+|+.|++.+|.+... .....+..+++|+.|++.+|.+...+ -..+.+++.|++|++.+
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~--krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP--KRAFSGLEALEHLDLGD 425 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc--hhhhccCcccceecCCC
Confidence 98887776654 677888999999999986211 12344777999999999999998886 36888999999999999
Q ss_pred CCCCCCCCcccccccc
Q 048040 162 CALPPINPSFICGWEI 177 (178)
Q Consensus 162 n~~~~~~~~~~~~l~~ 177 (178)
|.+..+.|.+|..+.+
T Consensus 426 NaiaSIq~nAFe~m~L 441 (873)
T KOG4194|consen 426 NAIASIQPNAFEPMEL 441 (873)
T ss_pred Ccceeecccccccchh
Confidence 9999999999887754
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.47 E-value=1.9e-14 Score=114.07 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=97.5
Q ss_pred ecCCCCCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040 16 CRNTTGHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK 79 (178)
Q Consensus 16 ~~~~~~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 79 (178)
|......+..|+|++|.|. .++.|.++...+..|.++++|+.|+|..|.|... -.-.|.++++
T Consensus 168 sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~S 246 (873)
T KOG4194|consen 168 SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-EGLTFQGLPS 246 (873)
T ss_pred CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-hhhhhcCchh
Confidence 4445567888888888653 2233344433333444455555555555555442 2334455555
Q ss_pred CcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEE
Q 048040 80 LRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158 (178)
Q Consensus 80 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~ 158 (178)
|+.|.+..|.+..+.. .|..+.++++|++..|++.... ..++..+++|++|++++|.|.... .+.+...++|.+|+
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELD 323 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhhhheee--cchhhhcccceeEe
Confidence 5555555554444322 4556677777777777764443 244677788888888888887774 35778888888899
Q ss_pred ecCCCCCCCCCcccccc
Q 048040 159 LRSCALPPINPSFICGW 175 (178)
Q Consensus 159 l~~n~~~~~~~~~~~~l 175 (178)
+++|+++...++.|..|
T Consensus 324 Ls~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRVL 340 (873)
T ss_pred ccccccccCChhHHHHH
Confidence 98888888777766544
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=8.4e-13 Score=108.95 Aligned_cols=126 Identities=26% Similarity=0.391 Sum_probs=102.9
Q ss_pred CCcCCCce-----eeeeeeecCCC----CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh
Q 048040 2 EDEKRDCC-----KWRGVHCRNTT----GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE 72 (178)
Q Consensus 2 ~~~~~~~c-----~~~~~~~~~~~----~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 72 (178)
+|.+. +| .|.|+.|.... ..++.|+|+++ .+.+.+|..+..+.+|+.|+|++|.+.+. +|.
T Consensus 391 ~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n--------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~ 460 (623)
T PLN03150 391 GWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ--------GLRGFIPNDISKLRHLQSINLSGNSIRGN-IPP 460 (623)
T ss_pred CCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCC--------CccccCCHHHhCCCCCCEEECCCCcccCc-CCh
Confidence 57664 55 69999995321 24889999999 88999999999999999999999999986 899
Q ss_pred hhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCccccCCchHHHhc-cCCCCEEeccCCCC
Q 048040 73 FIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSH-LSSLRHLDLSYINL 138 (178)
Q Consensus 73 ~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~i 138 (178)
.+..+++|+.|++++| ..+.+|..+..+++|+.|++++|++.+. .+..++. ..++..+++.+|..
T Consensus 461 ~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR-VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc-CChHHhhccccCceEEecCCcc
Confidence 9999999999999999 4557888999999999999999997544 3344544 34667888888763
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=6.4e-14 Score=106.79 Aligned_cols=143 Identities=26% Similarity=0.308 Sum_probs=121.6
Q ss_pred CCeeEEEecCCccc---------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040 21 GHVKVLNLRTSDYE---------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL 85 (178)
Q Consensus 21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 85 (178)
.-|+.++++.|.++ ....+...+.+|..+..+++|..|++++|.+.+ +|..+..+..||.+++
T Consensus 388 ~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNL 465 (565)
T ss_pred cceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheecc
Confidence 44788999999884 223444455778888999999999999999998 8999999999999999
Q ss_pred cCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 86 SCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+.|.+..+|.....+..++++-.+.|++...+ +..+++|.+|.+||+.+|.+...|. .+++|.+|++|.+.+|+|.
T Consensus 466 S~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-~~~l~nm~nL~tLDL~nNdlq~IPp---~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 466 SFNRFRMLPECLYELQTLETLLASNNQIGSVD-PSGLKNMRNLTTLDLQNNDLQQIPP---ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccchHHHhhHHHHHHHHhccccccccC-hHHhhhhhhcceeccCCCchhhCCh---hhccccceeEEEecCCccC
Confidence 99988899998888888999888889985554 4558999999999999999988875 8999999999999999998
Q ss_pred CCCCc
Q 048040 166 PINPS 170 (178)
Q Consensus 166 ~~~~~ 170 (178)
.++.
T Consensus 542 -~Pr~ 545 (565)
T KOG0472|consen 542 -QPRH 545 (565)
T ss_pred -CCHH
Confidence 3443
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=8.8e-13 Score=91.81 Aligned_cols=126 Identities=32% Similarity=0.370 Sum_probs=58.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhh-CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhc-c
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALL-KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTL-R 98 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~ 98 (178)
..+++|+|++|.|..+. .+. .+.+|+.|++++|.++.. ..+..++.|+.|++++|.+..+++.+ .
T Consensus 19 ~~~~~L~L~~n~I~~Ie----------~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE----------NLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccc----------chhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHH
Confidence 45688999999443221 133 467899999999999973 35778899999999999888876555 4
Q ss_pred CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEe
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVL 159 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l 159 (178)
.+++|+.|++++|++........+..+++|+.|++.+|+++..+.+ ...+..+|+|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6899999999999998877777788999999999999999877542 446678899998874
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.31 E-value=5.2e-13 Score=107.21 Aligned_cols=83 Identities=25% Similarity=0.338 Sum_probs=47.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|||++|. +. +.|..+.+.+++.+|+|++|.|..+ .-+-+-+++.|-+|++++|.+..+|+.+..+
T Consensus 103 ~dLt~lDLShNq--------L~-EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ--------LR-EVPTNLEYAKNSIVLNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred ccceeeecchhh--------hh-hcchhhhhhcCcEEEEcccCccccC-CchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 457888898884 44 4555555666666666666666553 2223345555555555555555555555555
Q ss_pred CCCcEEEeeCCcc
Q 048040 101 SGLEYLNLENSHL 113 (178)
Q Consensus 101 ~~L~~L~l~~n~l 113 (178)
..|++|.+++|.+
T Consensus 173 ~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPL 185 (1255)
T ss_pred hhhhhhhcCCChh
Confidence 5555555555554
No 11
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=4.1e-13 Score=99.32 Aligned_cols=131 Identities=23% Similarity=0.270 Sum_probs=109.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++++|+++| .++ .+..++.-.++++.|+++.|.+... +.+..+++|+.||+++|.+..+-..-.++
T Consensus 284 q~LtelDLS~N--------~I~-~iDESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 284 QELTELDLSGN--------LIT-QIDESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred hhhhhcccccc--------chh-hhhhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHhhhhhHhhh
Confidence 56899999999 443 4555666788999999999999873 33889999999999999776665555678
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
.++++|.+++|.+.+.. -++.+.+|..||+++|+|....+ ...++++|-|+++.+.+|++.++
T Consensus 352 GNIKtL~La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cCEeeeehhhhhHhhhh---hhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCcccc
Confidence 89999999999986553 37888899999999999988865 67899999999999999999854
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.23 E-value=2e-12 Score=103.96 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=69.6
Q ss_pred CCeeEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 99 (178)
+.|..+|+++|+ |. +..|..+..|+++++|.|...++.. +|..++.+..|++|.+..|.+..+-..++.
T Consensus 7 pFVrGvDfsgND--------Fsg~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~lqkLEHLs~~HN~L~~vhGELs~ 76 (1255)
T KOG0444|consen 7 PFVRGVDFSGND--------FSGDRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSRLQKLEHLSMAHNQLISVHGELSD 76 (1255)
T ss_pred ceeecccccCCc--------CCCCcCchhHHHhhheeEEEechhhhhh--ChHHHHHHhhhhhhhhhhhhhHhhhhhhcc
Confidence 567889999994 44 3455555566666666665555554 455555555555555555544333334444
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
++.|+.+.+..|++...+.+..+-.+.-|++||++.|.+...|. .+..-+++.+|++++|.|.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccc
Confidence 45555555555554444444444444444555555544444432 3444444444444444444
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=1.2e-11 Score=86.13 Aligned_cols=112 Identities=23% Similarity=0.323 Sum_probs=45.5
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (178)
+-+..+++.|+|++|.|+.. . .+. .+.+|+.|++++|.+..+ +.+..++.|++|++++|++..... .....+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--E-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPN 89 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred cccccccccccccccccccc--c-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence 34556789999999999873 2 343 578999999999988776 367789999999999999976642 22356899
Q ss_pred CCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
|++|++++|.|.+..+ ...++.+++|++|++.+|++..
T Consensus 90 L~~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 90 LQELYLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --EEE-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGG
T ss_pred CCEEECcCCcCCChHH-hHHHHcCCCcceeeccCCcccc
Confidence 9999999999988854 4678899999999999999874
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=7e-12 Score=103.91 Aligned_cols=123 Identities=27% Similarity=0.316 Sum_probs=100.1
Q ss_pred ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccc
Q 048040 35 FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLF 114 (178)
Q Consensus 35 ~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 114 (178)
.+.+|.++...-+.+.++++|++|+|++|.+..- ....+.++..|+.|++++|.+..+|..+..+..|++|...+|++.
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f-pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF-PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccC-CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee
Confidence 5577788877778888999999999999999873 345678899999999999999999998889999999999999984
Q ss_pred cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCC
Q 048040 115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163 (178)
Q Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~ 163 (178)
..+ .+..++.|+.+|++.|.++..-- ......++|++|++++|.
T Consensus 444 ~fP---e~~~l~qL~~lDlS~N~L~~~~l--~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFP---ELAQLPQLKVLDLSCNNLSEVTL--PEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ech---hhhhcCcceEEecccchhhhhhh--hhhCCCcccceeeccCCc
Confidence 443 48888999999999999877631 122333789999999986
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=7.9e-11 Score=89.63 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=6.3
Q ss_pred CCeeEEEecCC
Q 048040 21 GHVKVLNLRTS 31 (178)
Q Consensus 21 ~~l~~l~l~~~ 31 (178)
..++.|++++|
T Consensus 81 ~~L~~L~l~~~ 91 (319)
T cd00116 81 CGLQELDLSDN 91 (319)
T ss_pred CceeEEEccCC
Confidence 35556666555
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=1.7e-10 Score=87.75 Aligned_cols=121 Identities=30% Similarity=0.362 Sum_probs=70.6
Q ss_pred hhhhCCCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCccccCCc
Q 048040 47 PALLKLHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSHLFSVGS 118 (178)
Q Consensus 47 ~~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~ 118 (178)
..+..+.+|+.|++++|.+++.. ++..+..++.|++|++++|.+.. ++..+..+++|+.|++++|.+.....
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 34555666777777777776421 22334445577777777764432 22344556777777777777643222
Q ss_pred hHHHhc----cCCCCEEeccCCCCCCc--ccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 119 LEWLSH----LSSLRHLDLSYINLTKS--RDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 119 ~~~~~~----l~~L~~L~l~~n~i~~~--~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
...... .+.|++|++++|.+++. ..+...+..+++|+++++++|.+...
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 221222 25777777777777633 22344556667777777777777643
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.13 E-value=2.1e-12 Score=98.66 Aligned_cols=118 Identities=27% Similarity=0.336 Sum_probs=71.2
Q ss_pred CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEE
Q 048040 52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHL 131 (178)
Q Consensus 52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (178)
|+.|+.++.-.|.++. +|+.++.|..|.-|++..|.+.++| .|..+..|..+.++.|++...+ ......+.++.+|
T Consensus 182 m~~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lp-ae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLP-AEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhhc--CChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhH-HHHhcccccceee
Confidence 4444444444444443 4444444444444444444444444 3444444444445555443322 1224477888999
Q ss_pred eccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccccc
Q 048040 132 DLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEI 177 (178)
Q Consensus 132 ~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~ 177 (178)
|++.|+++..|+ .+-.+++|..||+++|.++ ..|..++.+++
T Consensus 258 DLRdNklke~Pd---e~clLrsL~rLDlSNN~is-~Lp~sLgnlhL 299 (565)
T KOG0472|consen 258 DLRDNKLKEVPD---EICLLRSLERLDLSNNDIS-SLPYSLGNLHL 299 (565)
T ss_pred eccccccccCch---HHHHhhhhhhhcccCCccc-cCCccccccee
Confidence 999999888875 7777888899999999988 46777777654
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-10 Score=88.30 Aligned_cols=65 Identities=26% Similarity=0.306 Sum_probs=47.1
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccC-CCCCccc
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSC-GAPLEVP 94 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~ 94 (178)
...+.|+|.-| .++...+.+|..+.+|+.|+|+.|.|+.+ -|+.|.++.++..|.+.+ |.+..+|
T Consensus 67 ~~tveirLdqN--------~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 67 PETVEIRLDQN--------QISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcceEEEeccC--------CcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 44566666666 77766667888888888888888888887 677777777776666555 5665554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.99 E-value=8.8e-10 Score=92.34 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040 127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI 172 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 172 (178)
+|+.|++++|.++..| ..+..++.|+.|++++|++++..|..+
T Consensus 423 ~L~~L~Ls~NqLt~LP---~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 423 GLLSLSVYRNQLTRLP---ESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhccCcccccC---hHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4556666666666554 367788899999999999998777765
No 20
>PLN03150 hypothetical protein; Provisional
Probab=98.97 E-value=5.4e-09 Score=86.61 Aligned_cols=108 Identities=28% Similarity=0.302 Sum_probs=79.7
Q ss_pred CCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCC-CccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEec
Q 048040 55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAP-LEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDL 133 (178)
Q Consensus 55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 133 (178)
++.|+|++|.+.+. +|..+..+++|+.|++++|.+ +.+|..+..+++|+.|++++|++.+. .+..++.+++|++|++
T Consensus 420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 67778888888876 788888888888888888844 46777888888888888888887433 3456788888888888
Q ss_pred cCCCCCCcccHHHHHhc-cCCCcEEEecCCCCCC
Q 048040 134 SYINLTKSRDWFQVVAK-LRSLKTFVLRSCALPP 166 (178)
Q Consensus 134 ~~n~i~~~~~~~~~~~~-l~~L~~l~l~~n~~~~ 166 (178)
++|.+++.. +..+.. ..++..+++.+|....
T Consensus 498 s~N~l~g~i--P~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRV--PAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccC--ChHHhhccccCceEEecCCcccc
Confidence 888887662 234443 3456678887776543
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.95 E-value=4.3e-09 Score=92.68 Aligned_cols=62 Identities=29% Similarity=0.287 Sum_probs=38.6
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCc
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSH 112 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~ 112 (178)
+..+++|+.|++++|..... +|..+..+++|+.|++++| .+..+|..+ ++++|+.|++++|.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred cccCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 55666777777777654443 6666777777777777766 555555543 45555555555553
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.93 E-value=1.2e-08 Score=89.94 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=82.6
Q ss_pred CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040 52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH 130 (178)
Q Consensus 52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (178)
.++|+.|++++|..... +|..+..+++|+.|++++| .+..+|..+ .+++|+.|++++|..... . .....+|+.
T Consensus 777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~-~---p~~~~nL~~ 850 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT-F---PDISTNISD 850 (1153)
T ss_pred cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc-c---cccccccCE
Confidence 45788888888876654 7888899999999999887 677777765 688899999988763221 1 122357889
Q ss_pred EeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040 131 LDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC 173 (178)
Q Consensus 131 L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 173 (178)
|++++|.++..|. .+..+++|+.|++.+|.-...+|..+.
T Consensus 851 L~Ls~n~i~~iP~---si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 851 LNLSRTGIEEVPW---WIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred eECCCCCCccChH---HHhcCCCCCEEECCCCCCcCccCcccc
Confidence 9999998887764 678888899998888533334554433
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.88 E-value=4.7e-09 Score=88.15 Aligned_cols=101 Identities=27% Similarity=0.325 Sum_probs=51.9
Q ss_pred CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhcc-------------------CCCCCcEEEeeCCccc
Q 048040 54 DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLR-------------------NFSGLEYLNLENSHLF 114 (178)
Q Consensus 54 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------------------~l~~L~~L~l~~n~l~ 114 (178)
+|+.|++++|.++. +|..+. .+|+.|++++|.+..+|..+. ..++|+.|++++|.+.
T Consensus 263 ~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 263 ALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT 338 (754)
T ss_pred CCCEEECcCCccCc--cccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence 55666666666654 444332 356666666654444433211 0123455555555443
Q ss_pred cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 115 SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 115 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
..+ ..+ .++|+.|++++|.++..|. .+ .++|+.|++++|.++..
T Consensus 339 ~LP--~~l--~~sL~~L~Ls~N~L~~LP~---~l--p~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 339 SLP--ASL--PPELQVLDVSKNQITVLPE---TL--PPTITTLDVSRNALTNL 382 (754)
T ss_pred cCC--hhh--cCcccEEECCCCCCCcCCh---hh--cCCcCEEECCCCcCCCC
Confidence 322 111 2466777777776665542 22 25677777777777643
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.86 E-value=9.3e-09 Score=86.38 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=48.7
Q ss_pred CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCC
Q 048040 22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFS 101 (178)
Q Consensus 22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 101 (178)
.++.|++++| .+. .+|..+. .+|+.|++++|.++. +|..+. ..|+.|++++|.+..+|..+. .
T Consensus 200 ~L~~L~Ls~N--------~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s 262 (754)
T PRK15370 200 QITTLILDNN--------ELK-SLPENLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRITELPERLP--S 262 (754)
T ss_pred CCcEEEecCC--------CCC-cCChhhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccCcCChhHh--C
Confidence 4555666665 444 2333322 356666666666654 444332 245556665555445544332 3
Q ss_pred CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141 (178)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 141 (178)
+|+.|++++|++...+. .+ .++|+.|++++|.++..
T Consensus 263 ~L~~L~Ls~N~L~~LP~--~l--~~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 263 ALQSLDLFHNKISCLPE--NL--PEELRYLSVYDNSIRTL 298 (754)
T ss_pred CCCEEECcCCccCcccc--cc--CCCCcEEECCCCccccC
Confidence 45555555555543221 11 13455555555555544
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.85 E-value=1.3e-09 Score=90.81 Aligned_cols=128 Identities=27% Similarity=0.328 Sum_probs=103.9
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
.++..|+|++| .++......+.++..|+.|+|+||.++. +|..+..+..|++|...+|.+..+| .+..+
T Consensus 383 ~hLKVLhLsyN--------rL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l 451 (1081)
T KOG0618|consen 383 KHLKVLHLSYN--------RLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQL 451 (1081)
T ss_pred cceeeeeeccc--------ccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhc
Confidence 67899999999 6775445578889999999999999998 8899999999999999999888888 78899
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n 162 (178)
+.|++++++.|.+.....+. ...-++|++||++||.-..+. -..+..+..+..+++.-+
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLVFD--HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcceEEecccchhhhhhhhh-hCCCcccceeeccCCcccccc--hhhhHHhhhhhheecccC
Confidence 99999999999986554432 222279999999999865553 246777777777777655
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=2.6e-10 Score=90.60 Aligned_cols=132 Identities=30% Similarity=0.388 Sum_probs=98.1
Q ss_pred eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCC
Q 048040 23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSG 102 (178)
Q Consensus 23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~ 102 (178)
++.+||+-| .+. .+|..+..+ -|+.|.+++|+++. +|..++.+..|..|+.+.|.+..+|..+..+.+
T Consensus 123 lt~l~ls~N--------qlS-~lp~~lC~l-pLkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s 190 (722)
T KOG0532|consen 123 LTFLDLSSN--------QLS-HLPDGLCDL-PLKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS 190 (722)
T ss_pred HHHhhhccc--------hhh-cCChhhhcC-cceeEEEecCcccc--CCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence 444555555 444 345444333 47888888888887 677777778888888888877778888888888
Q ss_pred CcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC 173 (178)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 173 (178)
|+.|++.+|++... +..+. .-.|..||++.|++...|- .+.+|+.|++|-|.+|++. .+|..++
T Consensus 191 lr~l~vrRn~l~~l--p~El~-~LpLi~lDfScNkis~iPv---~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDL--PEELC-SLPLIRLDFSCNKISYLPV---DFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred HHHHHHhhhhhhhC--CHHHh-CCceeeeecccCceeecch---hhhhhhhheeeeeccCCCC-CChHHHH
Confidence 88888888887444 34455 3458899999999998874 8889999999999999988 4555544
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=9e-10 Score=85.03 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=81.6
Q ss_pred CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCC-CCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040 51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGA-PLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR 129 (178)
Q Consensus 51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (178)
.+.+|+.|.++.|+++..++...+..+++|+.|++..|. +..-......+..|+.|++++|++.+.......+.++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 567788888888888876566667778888888888772 2221122334567888999999887776556678888888
Q ss_pred EEeccCCCCCCcccH----HHHHhccCCCcEEEecCCCCC
Q 048040 130 HLDLSYINLTKSRDW----FQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 130 ~L~l~~n~i~~~~~~----~~~~~~l~~L~~l~l~~n~~~ 165 (178)
.|.++.+++...... .......++|+.|++..|++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 888888888766210 112356678888888888875
No 28
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.80 E-value=1e-10 Score=95.32 Aligned_cols=127 Identities=29% Similarity=0.380 Sum_probs=101.2
Q ss_pred CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCC
Q 048040 22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNF 100 (178)
Q Consensus 22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l 100 (178)
.+...++++| .+. .+..++.-++.|+.|+|+.|+++.. +.+..++.|++||+++|.++.+|. ....+
T Consensus 165 ~L~~a~fsyN--------~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 165 KLATASFSYN--------RLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC 232 (1096)
T ss_pred hHhhhhcchh--------hHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhh
Confidence 3455666666 555 4556777888999999999999873 378899999999999998888876 33344
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
. |+.|++.+|.+++... +.++.+|+.||+++|-+.++.+ ...+..+..|+.|.+.+|++-
T Consensus 233 ~-L~~L~lrnN~l~tL~g---ie~LksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTTLRG---IENLKSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h-heeeeecccHHHhhhh---HHhhhhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCccc
Confidence 4 9999999999876643 7888999999999999998865 456777888999999999864
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.74 E-value=1.9e-09 Score=82.43 Aligned_cols=153 Identities=20% Similarity=0.275 Sum_probs=111.9
Q ss_pred CceeeeeeeecCCC--CCe--eEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcE
Q 048040 7 DCCKWRGVHCRNTT--GHV--KVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRY 82 (178)
Q Consensus 7 ~~c~~~~~~~~~~~--~~l--~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 82 (178)
..|...+.+|...+ +.+ ...+.++.++. .+...+|+ ....++|..|.|+.. .+..|..++.|+.
T Consensus 28 ~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~-----eVP~~LP~------~tveirLdqN~I~~i-P~~aF~~l~~LRr 95 (498)
T KOG4237|consen 28 PTCAHSASACPAPCTCSDVEGGIVDCRGKGLT-----EVPANLPP------ETVEIRLDQNQISSI-PPGAFKTLHRLRR 95 (498)
T ss_pred hhhhhccccCCCCcccCCCCCceEEccCCCcc-----cCcccCCC------cceEEEeccCCcccC-Chhhccchhhhce
Confidence 34555555665422 222 34566666332 23333443 557889999999997 6789999999999
Q ss_pred EeccCCCCCcc-chhccCCCCCcEEEeeC-CccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEec
Q 048040 83 LNLSCGAPLEV-PRTLRNFSGLEYLNLEN-SHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLR 160 (178)
Q Consensus 83 L~l~~~~~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~ 160 (178)
|+++.|.+..+ |.+|..+..+..|-+-+ |+++..+ ...++.+.+++.|.+.-|.+.... .+.+..++++..|.+-
T Consensus 96 LdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k~~F~gL~slqrLllNan~i~Cir--~~al~dL~~l~lLsly 172 (498)
T KOG4237|consen 96 LDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP-KGAFGGLSSLQRLLLNANHINCIR--QDALRDLPSLSLLSLY 172 (498)
T ss_pred ecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh-hhHhhhHHHHHHHhcChhhhcchh--HHHHHHhhhcchhccc
Confidence 99999988877 67899998877776655 8887665 355899999999999999988875 4688999999999999
Q ss_pred CCCCCCCCCccccc
Q 048040 161 SCALPPINPSFICG 174 (178)
Q Consensus 161 ~n~~~~~~~~~~~~ 174 (178)
+|.+..+.-..+.+
T Consensus 173 Dn~~q~i~~~tf~~ 186 (498)
T KOG4237|consen 173 DNKIQSICKGTFQG 186 (498)
T ss_pred chhhhhhccccccc
Confidence 99887544435444
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=8.8e-09 Score=59.42 Aligned_cols=56 Identities=36% Similarity=0.559 Sum_probs=22.0
Q ss_pred CCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCC
Q 048040 55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENS 111 (178)
Q Consensus 55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n 111 (178)
|++|++++|.++.. .+..|..+++|++|++++|.+..++. .|..+++|+.|++++|
T Consensus 3 L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34444444444432 22333444444444444443333322 3334444444444443
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=7.5e-08 Score=80.99 Aligned_cols=101 Identities=23% Similarity=0.249 Sum_probs=54.0
Q ss_pred CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040 53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD 132 (178)
Q Consensus 53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (178)
++|+.|++++|.++. +|.. .++|+.|++.+|.+..+|.. ..+|+.|++++|++...+. .+++|+.|+
T Consensus 242 ~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~-----~p~~L~~Ld 308 (788)
T PRK15387 242 PELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV-----LPPGLQELS 308 (788)
T ss_pred CCCcEEEecCCccCc--ccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCccccccc-----cccccceeE
Confidence 445555555555554 2321 23445555555544333331 1345566666666644331 235788888
Q ss_pred ccCCCCCCcccHHHHHhc-------------c-CCCcEEEecCCCCCC
Q 048040 133 LSYINLTKSRDWFQVVAK-------------L-RSLKTFVLRSCALPP 166 (178)
Q Consensus 133 l~~n~i~~~~~~~~~~~~-------------l-~~L~~l~l~~n~~~~ 166 (178)
+++|.++..+..+..+.. + .+|++|++++|++++
T Consensus 309 LS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 309 VSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS 356 (788)
T ss_pred CCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC
Confidence 888887776432222211 1 257778888888775
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.72 E-value=2e-10 Score=91.23 Aligned_cols=122 Identities=23% Similarity=0.286 Sum_probs=72.5
Q ss_pred cchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHh
Q 048040 44 TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLS 123 (178)
Q Consensus 44 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (178)
.+|..+..+..|..++++.|.++. +|..++.++ |+.|-+++|.+..+|+.++.++.|..|+.+.|.+.+.+ ..++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp--sql~ 186 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP--SQLG 186 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhch--HHhh
Confidence 344555566666666666666665 455554333 45555666666666666665566666666666654433 3356
Q ss_pred ccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 124 HLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 124 ~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
.+.+|+.|.++.|.+..+|+ .+. .-.|..||++.|++. .+|-.|..|
T Consensus 187 ~l~slr~l~vrRn~l~~lp~---El~-~LpLi~lDfScNkis-~iPv~fr~m 233 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLPE---ELC-SLPLIRLDFSCNKIS-YLPVDFRKM 233 (722)
T ss_pred hHHHHHHHHHhhhhhhhCCH---HHh-CCceeeeecccCcee-ecchhhhhh
Confidence 66666666666666666653 444 335667777777777 466555554
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=2e-08 Score=57.94 Aligned_cols=60 Identities=32% Similarity=0.472 Sum_probs=52.3
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGA 89 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~ 89 (178)
++++.|++++| .+....+..|.++++|++|++++|.+... .+..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n--------~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN--------KLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS--------TESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC--------CCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 36889999999 77765566888999999999999999985 57789999999999999984
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=3.4e-08 Score=77.61 Aligned_cols=134 Identities=30% Similarity=0.450 Sum_probs=81.0
Q ss_pred CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCC
Q 048040 22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFS 101 (178)
Q Consensus 22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 101 (178)
.++.|++++|.+ . .+|..+..+++|+.|+++.|.+.. ++.....++.|+.|++++|.+..+|.......
T Consensus 141 nL~~L~l~~N~i--------~-~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~ 209 (394)
T COG4886 141 NLKELDLSDNKI--------E-SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEIELLS 209 (394)
T ss_pred hcccccccccch--------h-hhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCccccCchhhhhhh
Confidence 677888888843 3 222345566666666666666665 44444455666666666665555554433333
Q ss_pred CCcEEEeeCC-----------------------ccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEE
Q 048040 102 GLEYLNLENS-----------------------HLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158 (178)
Q Consensus 102 ~L~~L~l~~n-----------------------~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~ 158 (178)
.|+.+.+++| ++... +..++.+++++.|++++|.++..+ .++....++.++
T Consensus 210 ~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~----~~~~~~~l~~L~ 283 (394)
T COG4886 210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSIS----SLGSLTNLRELD 283 (394)
T ss_pred hhhhhhhcCCcceecchhhhhcccccccccCCceeeec--cchhccccccceeccccccccccc----cccccCccCEEe
Confidence 3444444444 43221 233566677888888888877765 267778888888
Q ss_pred ecCCCCCCCCCccc
Q 048040 159 LRSCALPPINPSFI 172 (178)
Q Consensus 159 l~~n~~~~~~~~~~ 172 (178)
+++|.+...+|...
T Consensus 284 ~s~n~~~~~~~~~~ 297 (394)
T COG4886 284 LSGNSLSNALPLIA 297 (394)
T ss_pred ccCccccccchhhh
Confidence 88887776655543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.5e-08 Score=75.45 Aligned_cols=105 Identities=29% Similarity=0.315 Sum_probs=79.9
Q ss_pred CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040 53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD 132 (178)
Q Consensus 53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (178)
.-|+.++|++|.|+. +..++.-++.++.|+++.|.+..+. .++.+++|+.|++++|.+.... .+-..+.+++.|.
T Consensus 284 q~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~--Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECV--GWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchhh--hhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhh--hhHhhhcCEeeee
Confidence 457788888888887 5677777788888888888766553 3777888888888888875443 3345677888888
Q ss_pred ccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 133 LSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 133 l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
+++|.|.... .+.++=+|..|++.+|++..
T Consensus 359 La~N~iE~LS----GL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 359 LAQNKIETLS----GLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhhhhHhhhh----hhHhhhhheeccccccchhh
Confidence 8888887765 56778889999999998764
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=3.7e-08 Score=77.43 Aligned_cols=134 Identities=27% Similarity=0.421 Sum_probs=97.0
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCC-CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLH-DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 99 (178)
..++.+++.++ .+. .+++....+. +|+.|++++|.+.. ++..+..++.|+.|++++|.+..+|.....
T Consensus 116 ~~l~~L~l~~n--------~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 116 TNLTSLDLDNN--------NIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred cceeEEecCCc--------ccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhh
Confidence 45888999988 555 4555555564 99999999999998 677889999999999999998888887778
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc--------------------HHHHHhccCCCcEEEe
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD--------------------WFQVVAKLRSLKTFVL 159 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~--------------------~~~~~~~l~~L~~l~l 159 (178)
.+.|+.|++++|++...+.. .+....|+++.+++|.+...+. +...++.++.++.|++
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~--~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPE--IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhhhheeccCCccccCchh--hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecc
Confidence 89999999999998666532 2344557777777774222211 0234555566666777
Q ss_pred cCCCCCCC
Q 048040 160 RSCALPPI 167 (178)
Q Consensus 160 ~~n~~~~~ 167 (178)
++|.++..
T Consensus 263 s~n~i~~i 270 (394)
T COG4886 263 SNNQISSI 270 (394)
T ss_pred cccccccc
Confidence 66666643
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=1.6e-07 Score=80.36 Aligned_cols=112 Identities=33% Similarity=0.386 Sum_probs=83.3
Q ss_pred hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhcc
Q 048040 46 SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHL 125 (178)
Q Consensus 46 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (178)
...|..++.|++|+|++|.-... +|..++.+.+|++|++++..+..+|..+.++.+|.+|++..+...... +.....+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L 641 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLEL 641 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhc
Confidence 33477799999999998776555 899999999999999999988899999999999999999877642222 3445668
Q ss_pred CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040 126 SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159 (178)
Q Consensus 126 ~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l 159 (178)
.+|++|.+..............+..++.|+.+.+
T Consensus 642 ~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 642 QSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 8999999988774443322344555556655555
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=78.51 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=95.5
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhC-CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLK-LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 99 (178)
..+++||++|.. .+....|..++. ++.|+.|.+.+-.+...+...-..++++|..||+++..+..+ .+++.
T Consensus 122 ~nL~~LdI~G~~-------~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSE-------LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred HhhhhcCccccc-------hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 456777777763 344445554443 688888888887775533445566888888888888766655 67778
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc----cHHHHHhccCCCcEEEecCCCCCC
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR----DWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
+++|+.|.+.+-.+........+-++++|++||+|.......+ .+.+.-..+|.|+.||++++.+..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 8888888888777766555566778888888888887655443 123333467788888888776654
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.52 E-value=4.3e-07 Score=68.67 Aligned_cols=145 Identities=22% Similarity=0.225 Sum_probs=88.5
Q ss_pred CCeeEEEecCCccc-----------------------ccccccccccchh-------hhhCCCCCCEEEccCCCCCCCCc
Q 048040 21 GHVKVLNLRTSDYE-----------------------FARRKFLKGTISP-------ALLKLHDLRHLDLSNNDFGGSPI 70 (178)
Q Consensus 21 ~~l~~l~l~~~~~~-----------------------~~~~~~l~~~~~~-------~l~~l~~L~~L~l~~n~~~~~~~ 70 (178)
..++.++|++|.+. ++-..+...++|. .+...++|+.++|+.|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 56788888888872 1122223334444 34455689999999998875412
Q ss_pred ---hhhhcccCCCcEEeccCCCCCccc--------------hhccCCCCCcEEEeeCCccccCCch---HHHhccCCCCE
Q 048040 71 ---PEFIGSLSKLRYLNLSCGAPLEVP--------------RTLRNFSGLEYLNLENSHLFSVGSL---EWLSHLSSLRH 130 (178)
Q Consensus 71 ---~~~l~~l~~L~~L~l~~~~~~~~~--------------~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~ 130 (178)
-..+.+.+.|++|.+.+|.++... .....-++|+++..++|++...+.. ..+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 234567788999999888555321 1123446788888888887444322 22445566677
Q ss_pred EeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCCC
Q 048040 131 LDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 131 L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+.+..|.|.... .....+..++.|++|++++|.++
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 777776664331 23445566666777777666655
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=2.6e-07 Score=69.81 Aligned_cols=142 Identities=20% Similarity=0.172 Sum_probs=98.2
Q ss_pred CCCeeEEEecCCcccccccccccccchh----hhhCCCCCCEEEccCCCCCCCCchhh-------------hcccCCCcE
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISP----ALLKLHDLRHLDLSNNDFGGSPIPEF-------------IGSLSKLRY 82 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~-------------l~~l~~L~~ 82 (178)
+++++.+|||.| .|...-++ .+.....|+.|+|.+|++... -... ..+-+.|++
T Consensus 91 ~~~L~~ldLSDN--------A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~~~kk~~~~~~Lrv 161 (382)
T KOG1909|consen 91 CPKLQKLDLSDN--------AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELAVNKKAASKPKLRV 161 (382)
T ss_pred CCceeEeecccc--------ccCccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHHHHhccCCCcceEE
Confidence 358999999999 55543333 345577888889999988742 1122 234567888
Q ss_pred EeccCCCCCccc-----hhccCCCCCcEEEeeCCccccCCc---hHHHhccCCCCEEeccCCCCCCc--ccHHHHHhccC
Q 048040 83 LNLSCGAPLEVP-----RTLRNFSGLEYLNLENSHLFSVGS---LEWLSHLSSLRHLDLSYINLTKS--RDWFQVVAKLR 152 (178)
Q Consensus 83 L~l~~~~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~~~l~ 152 (178)
+....|.+...+ ..+...+.|+.+.+..|.+-.... ...+..+++|+.||++.|.|+.. ..++..+..++
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 888888655433 356677888888888888744432 23367788889999998888766 23456667778
Q ss_pred CCcEEEecCCCCCCCCCc
Q 048040 153 SLKTFVLRSCALPPINPS 170 (178)
Q Consensus 153 ~L~~l~l~~n~~~~~~~~ 170 (178)
.|+++++++|.+......
T Consensus 242 ~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAI 259 (382)
T ss_pred hheeecccccccccccHH
Confidence 888888888887754443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.4e-07 Score=73.23 Aligned_cols=119 Identities=22% Similarity=0.226 Sum_probs=87.0
Q ss_pred hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc--hhccCCCCCcEEEeeCCccccCCchHH--
Q 048040 46 SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP--RTLRNFSGLEYLNLENSHLFSVGSLEW-- 121 (178)
Q Consensus 46 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 121 (178)
-..+..++.|..|+|++|....+ ......-+..|+.|+|++|.+-..+ .....++.|..|+++.+.+.+...+..
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s 293 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES 293 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc
Confidence 34456789999999999953221 2222334567889999998544444 466788999999999999866654432
Q ss_pred ---HhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 122 ---LSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 122 ---~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
...+++|+.|++..|+|.+.+. ...+..+++|+++.+..|.+..
T Consensus 294 ~~kt~~f~kL~~L~i~~N~I~~w~s-l~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 294 LDKTHTFPKLEYLNISENNIRDWRS-LNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhcccccceeeecccCccccccc-cchhhccchhhhhhcccccccc
Confidence 3567899999999999987764 5567777888888888887764
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=1.1e-06 Score=47.02 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=22.9
Q ss_pred CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+|++|++++|.|++.+. .++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~---~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP---ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG---HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc---hHhCCCCCCEEEecCCCCC
Confidence 56677777777766653 4667777777777777666
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=1.6e-07 Score=62.33 Aligned_cols=90 Identities=26% Similarity=0.266 Sum_probs=58.7
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (178)
+.....|...++++|.+.. .|+.|. ..+.++.+++.+|.+..+|+.+..++.|+.++++.|.+... ++.+..+.+
T Consensus 49 l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHh
Confidence 3344455556777777776 444443 34467777777777777777777777777777777776333 344555777
Q ss_pred CCEEeccCCCCCCcc
Q 048040 128 LRHLDLSYINLTKSR 142 (178)
Q Consensus 128 L~~L~l~~n~i~~~~ 142 (178)
+..|+..+|.+...+
T Consensus 125 l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 125 LDMLDSPENARAEID 139 (177)
T ss_pred HHHhcCCCCccccCc
Confidence 777777777766654
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.4e-07 Score=69.01 Aligned_cols=148 Identities=26% Similarity=0.267 Sum_probs=94.2
Q ss_pred CCeeEEEecCCccc-----------------ccccccccccchhhhhCCCCCCEEEccCCC-CCCCCchhhhcccCCCcE
Q 048040 21 GHVKVLNLRTSDYE-----------------FARRKFLKGTISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSLSKLRY 82 (178)
Q Consensus 21 ~~l~~l~l~~~~~~-----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~ 82 (178)
.+++.+||+...++ .+.++.+...+-..+....+|+.++++++. ++.....-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45788888888763 344555666666667777888888888854 554324455677788888
Q ss_pred EeccCCCCCc--cchhccCC-CCCcEEEeeCCcc--ccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040 83 LNLSCGAPLE--VPRTLRNF-SGLEYLNLENSHL--FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157 (178)
Q Consensus 83 L~l~~~~~~~--~~~~~~~l-~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 157 (178)
|++++|.+.. +...+... ++|..|++++++- ..........+++.|.+||++.+.--.. .....+.+++.|+++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheee
Confidence 8888884332 12222222 4677777777762 1122233357788899999988763222 346778888899988
Q ss_pred EecCCCCCCCCCcc
Q 048040 158 VLRSCALPPINPSF 171 (178)
Q Consensus 158 ~l~~n~~~~~~~~~ 171 (178)
.++.|. +++|..
T Consensus 344 SlsRCY--~i~p~~ 355 (419)
T KOG2120|consen 344 SLSRCY--DIIPET 355 (419)
T ss_pred ehhhhc--CCChHH
Confidence 887664 345554
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=2.6e-06 Score=73.07 Aligned_cols=137 Identities=26% Similarity=0.372 Sum_probs=94.6
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLR 98 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~ 98 (178)
-+.+..||+++| .--+.+|..++++.+|+.|++++..++. +|..+..+..|.+|++..+ ....+|....
T Consensus 570 m~~LrVLDLs~~--------~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 570 LPLLRVLDLSGN--------SSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred CcceEEEECCCC--------CccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheeccccccccccccchhh
Confidence 356777888876 6667899999999999999999999997 8999999999999999987 4555555666
Q ss_pred CCCCCcEEEeeCCcc-ccCCchHHHhccCCCCEEeccCCCC-----------------------CCcccHHHHHhccCCC
Q 048040 99 NFSGLEYLNLENSHL-FSVGSLEWLSHLSSLRHLDLSYINL-----------------------TKSRDWFQVVAKLRSL 154 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~i-----------------------~~~~~~~~~~~~l~~L 154 (178)
.+++|++|.+..... .+......+..+..|+.+....... ...+.....+..+.+|
T Consensus 640 ~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L 719 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNL 719 (889)
T ss_pred hcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCc
Confidence 799999999987652 1112223344444444444433222 0111113345566677
Q ss_pred cEEEecCCCCCC
Q 048040 155 KTFVLRSCALPP 166 (178)
Q Consensus 155 ~~l~l~~n~~~~ 166 (178)
+.|.+.++.++.
T Consensus 720 ~~L~i~~~~~~e 731 (889)
T KOG4658|consen 720 EELSILDCGISE 731 (889)
T ss_pred ceEEEEcCCCch
Confidence 777777777654
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=2.3e-06 Score=60.36 Aligned_cols=87 Identities=30% Similarity=0.317 Sum_probs=56.6
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc--hhccCCCCCcEEEeeCCccccCCchH--HHhc
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP--RTLRNFSGLEYLNLENSHLFSVGSLE--WLSH 124 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~ 124 (178)
|..+..|.+|.+..|.|+.+ -|.--..+++|..|.+.+|.+..+. ..+..+++|+.|.+-+|++....-.. .+..
T Consensus 60 lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 55677788888888888774 3444445566777887777655543 24566777888888777764443221 1466
Q ss_pred cCCCCEEeccCC
Q 048040 125 LSSLRHLDLSYI 136 (178)
Q Consensus 125 l~~L~~L~l~~n 136 (178)
+++|++||+..-
T Consensus 139 lp~l~~LDF~kV 150 (233)
T KOG1644|consen 139 LPSLRTLDFQKV 150 (233)
T ss_pred cCcceEeehhhh
Confidence 777888877654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=6.2e-07 Score=71.11 Aligned_cols=109 Identities=30% Similarity=0.412 Sum_probs=65.6
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL 128 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (178)
+..+.+|..+++..|.+.. +...+..+++|++|++++|.++.+ ..+..++.|+.|++.+|.+..... +..++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG---LESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhh--cccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC---Cccchhh
Confidence 4556677777777777765 333355666777777777765544 234455557777777777654432 3446667
Q ss_pred CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+.+++++|.+...... . ...+.+++.+.+.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhh-h-hhhccchHHHhccCCchh
Confidence 7777777776665420 1 355666666666666555
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.6e-06 Score=64.72 Aligned_cols=150 Identities=18% Similarity=0.183 Sum_probs=97.7
Q ss_pred eeeeeeecCC-CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040 10 KWRGVHCRNT-TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG 88 (178)
Q Consensus 10 ~~~~~~~~~~-~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~ 88 (178)
.|..+.|.-. -++++.|++++| .+...+-..=....+|++|-|.+..+........+..++.++.+.++.|
T Consensus 85 dWseI~~ile~lP~l~~LNls~N--------~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCN--------SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCC--------cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4666665532 267777777777 4443332111356677888888877776434455667777777766665
Q ss_pred CCCcc----------chh-------------c-------cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCC
Q 048040 89 APLEV----------PRT-------------L-------RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINL 138 (178)
Q Consensus 89 ~~~~~----------~~~-------------~-------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i 138 (178)
..+++ ... + .-++++..+.+..|++++...-.....++.+--|.++.|.|
T Consensus 157 ~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i 236 (418)
T KOG2982|consen 157 SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI 236 (418)
T ss_pred hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc
Confidence 32211 000 0 11577888888888776665444456677777888888888
Q ss_pred CCcccHHHHHhccCCCcEEEecCCCCCCCC
Q 048040 139 TKSRDWFQVVAKLRSLKTFVLRSCALPPIN 168 (178)
Q Consensus 139 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 168 (178)
..... .+.+.+++.|+.|.+.++++....
T Consensus 237 dswas-vD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 237 DSWAS-VDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred ccHHH-HHHHcCCchhheeeccCCcccccc
Confidence 77754 678899999999999999887543
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=2.2e-06 Score=60.45 Aligned_cols=107 Identities=24% Similarity=0.333 Sum_probs=84.8
Q ss_pred CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhc-cCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040 52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTL-RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH 130 (178)
Q Consensus 52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (178)
..+...++|+.|.+.. .+.|+.++.|.+|.+++|.+..+.+.+ ..+++|..|.+.+|++........+..+++|+.
T Consensus 41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 4567888999999975 345778899999999999777764444 456889999999999877776666889999999
Q ss_pred EeccCCCCCCcccH-HHHHhccCCCcEEEecC
Q 048040 131 LDLSYINLTKSRDW-FQVVAKLRSLKTFVLRS 161 (178)
Q Consensus 131 L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~ 161 (178)
|.+-+|.++....+ ...+..+++|+.||.+.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999998876431 23567889999998765
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=6.9e-06 Score=43.92 Aligned_cols=32 Identities=44% Similarity=0.611 Sum_probs=12.4
Q ss_pred CCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040 55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG 88 (178)
Q Consensus 55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~ 88 (178)
|++|++++|.++. +|..+..+++|+.|++++|
T Consensus 3 L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 3 LEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp -SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred ceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 3444444444443 3333444444444444444
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.10 E-value=1.4e-07 Score=77.64 Aligned_cols=109 Identities=32% Similarity=0.273 Sum_probs=87.6
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
+.++.|||++| +++..- .+..+.+|++|++++|.+.. +|..-..-..|+.|.+++|.++.+ .++.++
T Consensus 187 ~ale~LnLshN--------k~~~v~--~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL-~gie~L 253 (1096)
T KOG1859|consen 187 PALESLNLSHN--------KFTKVD--NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTL-RGIENL 253 (1096)
T ss_pred HHhhhhccchh--------hhhhhH--HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhh-hhHHhh
Confidence 66789999999 676543 68899999999999999998 444332233499999999966654 466788
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR 142 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 142 (178)
.+|+.|++++|-+.+..-...+..+..|+.|+|.||.+...|
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 999999999999877666666888889999999999998775
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=7.5e-07 Score=70.65 Aligned_cols=111 Identities=24% Similarity=0.284 Sum_probs=90.3
Q ss_pred hCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040 50 LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR 129 (178)
Q Consensus 50 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (178)
..+..+..+.+..|.+.. .-..+..+.+|..+++.+|.+..+...+..+++|++|++++|.+..... +..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchh
Confidence 355667777788888876 3455788899999999999887775557789999999999999866643 67777899
Q ss_pred EEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 130 HLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 130 ~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
.|++.+|.|+... .+..++.|+.+++++|.+..+-+
T Consensus 144 ~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 144 ELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hheeccCcchhcc----CCccchhhhcccCCcchhhhhhh
Confidence 9999999999986 44558999999999999986555
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=7.3e-07 Score=59.29 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN 99 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 99 (178)
.-+++.+++++| .|....+..-..++.+++++|+.|.+++ +|..+..++.|+.+++++|.+...|+.+..
T Consensus 52 ~~el~~i~ls~N--------~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~ 121 (177)
T KOG4579|consen 52 GYELTKISLSDN--------GFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAP 121 (177)
T ss_pred CceEEEEecccc--------hhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHH
Confidence 456777888888 7775555555567789999999999998 788899999999999999988888888888
Q ss_pred CCCCcEEEeeCCccccCC
Q 048040 100 FSGLEYLNLENSHLFSVG 117 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~ 117 (178)
+.++..|+..+|....++
T Consensus 122 L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 122 LIKLDMLDSPENARAEID 139 (177)
T ss_pred HHhHHHhcCCCCccccCc
Confidence 999999999999876554
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=0.00014 Score=53.94 Aligned_cols=118 Identities=22% Similarity=0.249 Sum_probs=77.9
Q ss_pred hhhhCCCCCCEEEccCCCCCCCCch----hhhcccCCCcEEeccCCCCCccc-----h---------hccCCCCCcEEEe
Q 048040 47 PALLKLHDLRHLDLSNNDFGGSPIP----EFIGSLSKLRYLNLSCGAPLEVP-----R---------TLRNFSGLEYLNL 108 (178)
Q Consensus 47 ~~l~~l~~L~~L~l~~n~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~-----~---------~~~~l~~L~~L~l 108 (178)
+.+...++|+..+|+.|-+... .| ..+.+.+.|.+|.+++|..+.+. . ....-|.|+++.+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 3456778999999999998764 33 45677788999999998665431 1 1234578999999
Q ss_pred eCCccccCCchHH---HhccCCCCEEeccCCCCCCcc-c--HHHHHhccCCCcEEEecCCCCC
Q 048040 109 ENSHLFSVGSLEW---LSHLSSLRHLDLSYINLTKSR-D--WFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 109 ~~n~l~~~~~~~~---~~~l~~L~~L~l~~n~i~~~~-~--~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
++|++...+.... +..-..|+++.+..|.|.... . ....+..+.+|++|++++|-++
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 9999855543211 222246777778888775441 1 1123345667788888887766
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=7.2e-05 Score=55.45 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=99.8
Q ss_pred CCCeeEEEecCCcccccccccccccchh----hhhCCCCCCEEEccCCCCCCCCchhh-------------hcccCCCcE
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISP----ALLKLHDLRHLDLSNNDFGGSPIPEF-------------IGSLSKLRY 82 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~-------------l~~l~~L~~ 82 (178)
+++++.++||.| .|....|. .++.-..|.+|.|++|++... -... ..+-+.|+.
T Consensus 91 cp~l~~v~LSDN--------Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 91 CPRLQKVDLSDN--------AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred CCcceeeecccc--------ccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHHHHHHHHHHHHhhhccCCCceE
Confidence 478899999999 66665554 456678899999999998753 2222 234577888
Q ss_pred EeccCCCCCccch-----hccCCCCCcEEEeeCCccccCCch--HH--HhccCCCCEEeccCCCCCCcc--cHHHHHhcc
Q 048040 83 LNLSCGAPLEVPR-----TLRNFSGLEYLNLENSHLFSVGSL--EW--LSHLSSLRHLDLSYINLTKSR--DWFQVVAKL 151 (178)
Q Consensus 83 L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~--~~--~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l 151 (178)
+....|.+...+. .+..-..|+.+.+..|.+...+.. .+ ..-+.+|++||+..|-++... .++..+..+
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 8888886554443 233446899999999988444321 11 344578999999999998773 235566677
Q ss_pred CCCcEEEecCCCCCCCCC
Q 048040 152 RSLKTFVLRSCALPPINP 169 (178)
Q Consensus 152 ~~L~~l~l~~n~~~~~~~ 169 (178)
+.|++|.+.+|.++....
T Consensus 242 ~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 242 NLLRELRLNDCLLSNEGV 259 (388)
T ss_pred chhhhccccchhhccccH
Confidence 788999999988875443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=67.04 Aligned_cols=109 Identities=19% Similarity=0.283 Sum_probs=82.3
Q ss_pred CCCCEEEccCCCCCCCCchhh-hcccCCCcEEeccCC-C-CCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040 53 HDLRHLDLSNNDFGGSPIPEF-IGSLSKLRYLNLSCG-A-PLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR 129 (178)
Q Consensus 53 ~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~~-~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (178)
.+|+.|+++|...-....+.. -..+|+|+.|.+.+- . ...+.+...++++|..||+++.++... .-++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 578999999876543224544 457899999999875 2 223344556889999999999998655 3488899999
Q ss_pred EEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 130 HLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 130 ~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+|.+++-.+..... ...+-.+++|++||++..+..
T Consensus 199 ~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 199 VLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHhccCCCCCchhh-HHHHhcccCCCeeeccccccc
Confidence 99999988877654 456778999999999986654
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.80 E-value=1.2e-05 Score=58.80 Aligned_cols=112 Identities=24% Similarity=0.231 Sum_probs=74.2
Q ss_pred cchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCC---ccchhccCCCCCcEEEeeCCccccCCchH
Q 048040 44 TISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL---EVPRTLRNFSGLEYLNLENSHLFSVGSLE 120 (178)
Q Consensus 44 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 120 (178)
.+......+..|+.+.+.+..++. ...+..|++|+.|.++.|..+ .++...-.+++|+++++++|+++......
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred Ccccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence 344444556667777777777764 234667888999999888222 23334445689999999999986554444
Q ss_pred HHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEE
Q 048040 121 WLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFV 158 (178)
Q Consensus 121 ~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~ 158 (178)
....+.+|..|++..+..+...+. -..+.-+++|.+++
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 567777888999999887776322 33444556666655
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00014 Score=57.23 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=32.3
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccch
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPR 95 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~ 95 (178)
..++.|++++| .+.. +| .-..+|+.|.+++|.--.. +|..+. .+|+.|.+++| .+..+|.
T Consensus 52 ~~l~~L~Is~c--------~L~s-LP---~LP~sLtsL~Lsnc~nLts-LP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 52 RASGRLYIKDC--------DIES-LP---VLPNELTEITIENCNNLTT-LPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred cCCCEEEeCCC--------CCcc-cC---CCCCCCcEEEccCCCCccc-CCchhh--hhhhheEccCccccccccc
Confidence 45667777777 3331 22 1123577777766443222 454442 46777777776 5554543
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=9.2e-06 Score=60.77 Aligned_cols=139 Identities=19% Similarity=0.139 Sum_probs=82.2
Q ss_pred ecCCCCCeeEEEecCCcccccccccccccc-hhhhhCCCCCCEEEccCCCCCCCCchhhhccc-CCCcEEeccCC--CCC
Q 048040 16 CRNTTGHVKVLNLRTSDYEFARRKFLKGTI-SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSL-SKLRYLNLSCG--APL 91 (178)
Q Consensus 16 ~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l-~~L~~L~l~~~--~~~ 91 (178)
|......+++++++.+. +++..- .-.++..+.|..|+++.|.+....+...+... +.|..|+++|+ .++
T Consensus 229 ~iAkN~~L~~lnlsm~s-------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 229 TIAKNSNLVRLNLSMCS-------GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred HHhccccceeecccccc-------ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 44556788889998873 555432 33567788888888888887642122222111 34666777765 111
Q ss_pred --ccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040 92 --EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162 (178)
Q Consensus 92 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n 162 (178)
++..-...++++.+|+++.|..........+.+++.|++|+++.+..-. |...-.+...+.|.+|++.++
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEeccc
Confidence 2222334667777777777775444555566777777777777665322 211224456667777776553
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.40 E-value=0.00014 Score=53.21 Aligned_cols=117 Identities=25% Similarity=0.291 Sum_probs=74.9
Q ss_pred ecCCCCCeeEEEecCCcccccccc--cccccchhhhhCCCCCCEEEccCC--CCCCCCchhhhcccCCCcEEeccCCCCC
Q 048040 16 CRNTTGHVKVLNLRTSDYEFARRK--FLKGTISPALLKLHDLRHLDLSNN--DFGGSPIPEFIGSLSKLRYLNLSCGAPL 91 (178)
Q Consensus 16 ~~~~~~~l~~l~l~~~~~~~~~~~--~l~~~~~~~l~~l~~L~~L~l~~n--~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 91 (178)
|....+.+..+.-.+..++.++.. .++. -..+..+++|+.|.++.| .++.. +......+++|+++.+++|.++
T Consensus 28 ~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 28 ARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred hhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCccc
Confidence 333334455555555444332211 2221 123567889999999999 55554 6666667799999999999766
Q ss_pred cc--chhccCCCCCcEEEeeCCccccCCchH--HHhccCCCCEEeccC
Q 048040 92 EV--PRTLRNFSGLEYLNLENSHLFSVGSLE--WLSHLSSLRHLDLSY 135 (178)
Q Consensus 92 ~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~ 135 (178)
.+ -..+..+.+|..|++..|..+.....+ .+.-+++|++|+-..
T Consensus 105 ~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 105 DLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 53 234566778889999998876554432 356678888877554
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00012 Score=54.93 Aligned_cols=87 Identities=26% Similarity=0.312 Sum_probs=56.1
Q ss_pred CCCCCCEEEccCCCCCCC-CchhhhcccCCCcEEeccCCCCCccchhc-cCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040 51 KLHDLRHLDLSNNDFGGS-PIPEFIGSLSKLRYLNLSCGAPLEVPRTL-RNFSGLEYLNLENSHLFSVGSLEWLSHLSSL 128 (178)
Q Consensus 51 ~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (178)
....++.++|.+|.|++. ++...+.+|+.|++|+++.|.+....... ..+.+|++|.+.+..+.-.........+|++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 345678888888888762 24456678888888888887544322222 3556778877777665222233446667778
Q ss_pred CEEeccCCC
Q 048040 129 RHLDLSYIN 137 (178)
Q Consensus 129 ~~L~l~~n~ 137 (178)
++|+++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 888888774
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=3e-05 Score=57.61 Aligned_cols=84 Identities=24% Similarity=0.281 Sum_probs=48.4
Q ss_pred CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040 51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH 130 (178)
Q Consensus 51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (178)
.+.+.+.|+.=||++.++ .....|+.|+.|.|+-|.+..+ ..+..+++|+.|++..|.+.+..-...+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345556666666666653 2334566666666666655443 234455666666666666655544455666666666
Q ss_pred EeccCCCC
Q 048040 131 LDLSYINL 138 (178)
Q Consensus 131 L~l~~n~i 138 (178)
|.+..|.=
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 66666653
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.19 E-value=0.0042 Score=49.12 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=24.7
Q ss_pred hCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccCCCCCcEEEeeCC
Q 048040 50 LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRNFSGLEYLNLENS 111 (178)
Q Consensus 50 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~~L~l~~n 111 (178)
....++..|++++|.++. +| .+ ..+|+.|.+++| .+..+|..+ ..+|+.|.+.+|
T Consensus 49 ~~~~~l~~L~Is~c~L~s--LP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIES--LP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcc--cC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 334555555555555544 33 11 123555555554 333333322 124555555544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=5.6e-05 Score=56.16 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=54.6
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch--hccCCCCCcEEEeeCCccccCCch----HHH
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR--TLRNFSGLEYLNLENSHLFSVGSL----EWL 122 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~ 122 (178)
...|+.|++|.|+.|+|+.. ..+..++.|+.|+|..|.+..+-+ -+.++++|+.|.+..|...+.... ..+
T Consensus 37 c~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 35677788888888888752 455677788888888776665533 456788888888888876433321 225
Q ss_pred hccCCCCEEe
Q 048040 123 SHLSSLRHLD 132 (178)
Q Consensus 123 ~~l~~L~~L~ 132 (178)
..+++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 6677777665
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0022 Score=28.64 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=9.9
Q ss_pred CcEEEecCCCCCCCCCccccc
Q 048040 154 LKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 154 L~~l~l~~n~~~~~~~~~~~~ 174 (178)
|++|++++|.++ .+|+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 34444443
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.23 E-value=0.016 Score=24.05 Aligned_cols=13 Identities=62% Similarity=0.687 Sum_probs=4.5
Q ss_pred CCCEEeccCCCCC
Q 048040 127 SLRHLDLSYINLT 139 (178)
Q Consensus 127 ~L~~L~l~~n~i~ 139 (178)
+|+.|++++|.++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.09 E-value=0.051 Score=35.45 Aligned_cols=104 Identities=17% Similarity=0.279 Sum_probs=36.6
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (178)
|.+..+|+.+.+.. .+... ....|..+..++.+.+..+ +..++. .+..++.++.+.+.. .+...+. ..+..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-cccccccc
Confidence 33444555555543 23332 2334444545555555443 222322 344444555555543 2211111 12444555
Q ss_pred CCEEeccCCCCCCcccHHHHHhccCCCcEEEecC
Q 048040 128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRS 161 (178)
Q Consensus 128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~ 161 (178)
|+.+++..+ +...+. ..+.+. .++.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~--~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS--SSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHT--TTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEch--hhhcCC-CceEEEECC
Confidence 666665543 333321 234444 555555543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.51 E-value=0.058 Score=43.26 Aligned_cols=112 Identities=22% Similarity=0.210 Sum_probs=60.7
Q ss_pred CCCCCEEEccCCCC-CCCCchhhhcccCCCcEEeccCC--CCCccc----hhccCCCCCcEEEeeCCc-cccCCchHHHh
Q 048040 52 LHDLRHLDLSNNDF-GGSPIPEFIGSLSKLRYLNLSCG--APLEVP----RTLRNFSGLEYLNLENSH-LFSVGSLEWLS 123 (178)
Q Consensus 52 l~~L~~L~l~~n~~-~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 123 (178)
.+.|+.+.+.++.- ............+.|+.|+++++ .....+ .....+.+|+.++++++. +..........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666543 32112344556677777777652 222211 123345667777777776 43333222223
Q ss_pred ccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCCC
Q 048040 124 HLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCAL 164 (178)
Q Consensus 124 ~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~~ 164 (178)
.+++|++|.+.++. +++.. +......++.|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~g-l~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEG-LVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhH-HHHHHHhcCcccEEeeecCcc
Confidence 36677777766555 44443 244555667777777776543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.29 E-value=0.19 Score=32.67 Aligned_cols=116 Identities=14% Similarity=0.258 Sum_probs=57.7
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~ 99 (178)
..++.+.+... +...-...|.+..+|+.+.+..+ +... ....+.....++.+.+..+ ...++ ..+..
T Consensus 12 ~~l~~i~~~~~---------~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~ 79 (129)
T PF13306_consen 12 SNLESITFPNT---------IKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPNN-LKSIGDNAFSN 79 (129)
T ss_dssp TT--EEEETST-----------EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETST-T-EE-TTTTTT
T ss_pred CCCCEEEECCC---------eeEeChhhccccccccccccccc-cccc-ceeeeeccccccccccccc-ccccccccccc
Confidence 46777777642 33333345777888999999885 6553 3456778878999999663 33343 36677
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL 154 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L 154 (178)
+++++.+.+..+ +..... ..+..+ +|+.+.+.. .+...+ ...+.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~--~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIE--ENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS------GGG-----
T ss_pred cccccccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEEC--CccccccccC
Confidence 899999999765 322221 235666 888888775 444443 2355555554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.18 E-value=0.06 Score=43.18 Aligned_cols=115 Identities=27% Similarity=0.284 Sum_probs=72.6
Q ss_pred chhhhhCCCCCCEEEccCC-CC-CCCC--chhhhcccCCCcEEeccCCC-CCcc-chhc-cCCCCCcEEEeeCCc-cccC
Q 048040 45 ISPALLKLHDLRHLDLSNN-DF-GGSP--IPEFIGSLSKLRYLNLSCGA-PLEV-PRTL-RNFSGLEYLNLENSH-LFSV 116 (178)
Q Consensus 45 ~~~~l~~l~~L~~L~l~~n-~~-~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~-~~~~-~~l~~L~~L~l~~n~-l~~~ 116 (178)
+-+.....+.|+.|+++++ .. .... .......+..|+.++++++. +... -..+ ..+++|+.|.+.+|. +++.
T Consensus 206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~ 285 (482)
T KOG1947|consen 206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE 285 (482)
T ss_pred HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh
Confidence 3455677888999999873 22 2110 12334456778888888874 4432 1222 347889999988887 5666
Q ss_pred CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040 117 GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159 (178)
Q Consensus 117 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l 159 (178)
........++.|++|+++++.......+.....++++++.+.+
T Consensus 286 gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 286 GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 6656567788899999998875433223344555666666554
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=0.017 Score=41.17 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=56.3
Q ss_pred CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCcc-chhcc-CCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040 54 DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEV-PRTLR-NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH 130 (178)
Q Consensus 54 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (178)
.++.++-+++.|... -...+..+..++.|.+.+| .++.. -+.++ ..++|+.|++++|.-.+......+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 456667777777654 4556677777777777777 33332 12222 44788888888888555555666788888888
Q ss_pred EeccCCCCCCc
Q 048040 131 LDLSYINLTKS 141 (178)
Q Consensus 131 L~l~~n~i~~~ 141 (178)
|.+++-.....
T Consensus 181 L~l~~l~~v~~ 191 (221)
T KOG3864|consen 181 LHLYDLPYVAN 191 (221)
T ss_pred HHhcCchhhhc
Confidence 88777554333
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.79 E-value=0.056 Score=24.91 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=9.6
Q ss_pred CCCcEEEecCCCCCCCCCcc
Q 048040 152 RSLKTFVLRSCALPPINPSF 171 (178)
Q Consensus 152 ~~L~~l~l~~n~~~~~~~~~ 171 (178)
++|+.|++++|.+...++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555443333
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.79 E-value=0.056 Score=24.91 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=9.6
Q ss_pred CCCcEEEecCCCCCCCCCcc
Q 048040 152 RSLKTFVLRSCALPPINPSF 171 (178)
Q Consensus 152 ~~L~~l~l~~n~~~~~~~~~ 171 (178)
++|+.|++++|.+...++..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34555555555555443333
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=0.018 Score=41.03 Aligned_cols=78 Identities=27% Similarity=0.348 Sum_probs=34.0
Q ss_pred CcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhc-cCCCCEEeccCCC-CCCcccHHHHHhccCCCcE
Q 048040 80 LRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSH-LSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKT 156 (178)
Q Consensus 80 L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~ 156 (178)
++.++.+++.+... -+.+..++.++.|.+..|.-.+.-....++. .++|+.|++++|. |++.. ...+.++++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--L~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--LACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--HHHHHHhhhhHH
Confidence 44444444422211 2344455555555555555322222222222 3455555555553 44432 234445555554
Q ss_pred EEe
Q 048040 157 FVL 159 (178)
Q Consensus 157 l~l 159 (178)
|.+
T Consensus 181 L~l 183 (221)
T KOG3864|consen 181 LHL 183 (221)
T ss_pred HHh
Confidence 444
No 75
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=92.14 E-value=0.072 Score=27.96 Aligned_cols=12 Identities=50% Similarity=1.328 Sum_probs=9.5
Q ss_pred CCceeeeeeeec
Q 048040 6 RDCCKWRGVHCR 17 (178)
Q Consensus 6 ~~~c~~~~~~~~ 17 (178)
.++|.|.||.|.
T Consensus 32 ~~~C~W~GV~Cd 43 (43)
T PF08263_consen 32 SDPCSWSGVTCD 43 (43)
T ss_dssp S-CCCSTTEEE-
T ss_pred CCCeeeccEEeC
Confidence 699999999994
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.95 E-value=0.14 Score=23.01 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=7.5
Q ss_pred CCCCEEeccCCCCCCc
Q 048040 126 SSLRHLDLSYINLTKS 141 (178)
Q Consensus 126 ~~L~~L~l~~n~i~~~ 141 (178)
++|++|++++|.|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555666666655443
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.14 E-value=0.37 Score=22.41 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=11.6
Q ss_pred CCCCEEeccCCCCCCcc
Q 048040 126 SSLRHLDLSYINLTKSR 142 (178)
Q Consensus 126 ~~L~~L~l~~n~i~~~~ 142 (178)
.+|++|+++.|+|+...
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 46777777777776553
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.08 E-value=0.6 Score=38.35 Aligned_cols=62 Identities=21% Similarity=0.167 Sum_probs=28.5
Q ss_pred ccCCCcEEeccCCCCCcc---chhccCCCCCcEEEeeCC--ccccCCchHHHhcc--CCCCEEeccCCCCCC
Q 048040 76 SLSKLRYLNLSCGAPLEV---PRTLRNFSGLEYLNLENS--HLFSVGSLEWLSHL--SSLRHLDLSYINLTK 140 (178)
Q Consensus 76 ~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l--~~L~~L~l~~n~i~~ 140 (178)
+.+.+..+.+++|.+..+ ..-.+..++|..|+|++| .+... ..+.+. ..|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCcccc
Confidence 344555555666544333 112233456666666666 22111 112221 245666666666543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.21 E-value=0.018 Score=42.19 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN 99 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 99 (178)
..+++.||++.|.+..+. ..|+-+..+..++++-|.+.. +|.++..+..+..+++..|..++.|.++..
T Consensus 41 ~kr~tvld~~s~r~vn~~---------~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG---------KNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred cceeeeehhhhhHHHhhc---------cchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 356777777777432211 112333444555666666665 566666666666666666666666666666
Q ss_pred CCCCcEEEeeCCcc
Q 048040 100 FSGLEYLNLENSHL 113 (178)
Q Consensus 100 l~~L~~L~l~~n~l 113 (178)
.+.++.++.-.+.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 66666666666554
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.14 E-value=1.2 Score=35.52 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=7.3
Q ss_pred CCCCCEEEccCCC
Q 048040 52 LHDLRHLDLSNND 64 (178)
Q Consensus 52 l~~L~~L~l~~n~ 64 (178)
-.+|+++.++++.
T Consensus 319 ~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 319 CHNLQVLELSGCQ 331 (483)
T ss_pred CCceEEEeccccc
Confidence 3556666665554
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.59 E-value=0.9 Score=21.31 Aligned_cols=16 Identities=50% Similarity=0.559 Sum_probs=12.6
Q ss_pred CCCCEEeccCCCCCCc
Q 048040 126 SSLRHLDLSYINLTKS 141 (178)
Q Consensus 126 ~~L~~L~l~~n~i~~~ 141 (178)
++|++|++++|.|...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4688888888888665
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.33 E-value=0.81 Score=37.62 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=18.7
Q ss_pred CCCCCcEEEeeCCccccCCchHHH-hccCCCCEEeccCC
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWL-SHLSSLRHLDLSYI 136 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n 136 (178)
+.+.+..+++++|++..+.....+ ...|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555555666655444322222 33455666666665
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.30 E-value=2.9 Score=33.46 Aligned_cols=145 Identities=23% Similarity=0.277 Sum_probs=89.3
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCC-CchhhhcccCCCcEEeccCC-CCCcc-----
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGS-PIPEFIGSLSKLRYLNLSCG-APLEV----- 93 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~----- 93 (178)
+.++.+-+.++.. .++..++. .-++-..|+.+++..+..... .+...-...+.|+.+.++.| .+..-
T Consensus 320 ~~L~~l~l~~c~~--fsd~~ft~----l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 320 HNLQVLELSGCQQ--FSDRGFTM----LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CceEEEeccccch--hhhhhhhh----hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 5677777777731 22222221 113456788888888876531 12333346778999999877 33322
Q ss_pred chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040 94 PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI 172 (178)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 172 (178)
......+..+..+.+.+++.++......+..+++|+.+++.... ++..+ ...+..+++++++..+.. .+.+|..-
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~-i~~~~~~lp~i~v~a~~a---~~t~p~~v 469 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA-ISRFATHLPNIKVHAYFA---PVTPPGFV 469 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh-hHHHHhhCccceehhhcc---CCCCcccc
Confidence 22234567899999999998777777778888999999988875 33332 244566777777655432 23445544
Q ss_pred ccc
Q 048040 173 CGW 175 (178)
Q Consensus 173 ~~l 175 (178)
+++
T Consensus 470 ~~~ 472 (483)
T KOG4341|consen 470 KGL 472 (483)
T ss_pred ccc
Confidence 443
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.23 E-value=1.3 Score=20.59 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=10.7
Q ss_pred CCCEEeccCCCCCCccc
Q 048040 127 SLRHLDLSYINLTKSRD 143 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~~~ 143 (178)
+|+.|++++|.++..|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666653
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.89 E-value=0.083 Score=42.97 Aligned_cols=39 Identities=36% Similarity=0.482 Sum_probs=20.3
Q ss_pred CCCEEeccCCCCCCc--ccHHHHHhccCCCcEEEecCCCCC
Q 048040 127 SLRHLDLSYINLTKS--RDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~--~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+++++++..|.|+.. ......+...+.++++.+..|.+.
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 445666666665544 223344444555555666555544
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.13 E-value=0.042 Score=40.33 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=67.6
Q ss_pred hhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040 48 ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127 (178)
Q Consensus 48 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (178)
.+..+...+.|+++.|.+.. +..-+.-++.+..++++.|.+...|..+.....+..++...|.....+ ..++..+.
T Consensus 37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP--KSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC--ccccccCC
Confidence 45667888899999998875 556677778888889998888888888877777777777777754333 44788888
Q ss_pred CCEEeccCCCCC
Q 048040 128 LRHLDLSYINLT 139 (178)
Q Consensus 128 L~~L~l~~n~i~ 139 (178)
++.+++-+|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888753
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.80 E-value=0.16 Score=41.33 Aligned_cols=141 Identities=22% Similarity=0.260 Sum_probs=81.5
Q ss_pred CCeeEEEecCCccccccccccccc----chhhhhCC-CCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCCCCc
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGT----ISPALLKL-HDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGAPLE 92 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~----~~~~l~~l-~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 92 (178)
.+++.+++++|. +..+ +-..+... ..+++|.+..|.++... +...+.....++.++++.|.+..
T Consensus 115 ~~L~~L~l~~n~--------l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 115 PTLGQLDLSGNN--------LGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE 186 (478)
T ss_pred ccHhHhhcccCC--------CccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccch
Confidence 456666777663 3321 11222332 56677777778776531 34556666777888887773321
Q ss_pred -----cchhc----cCCCCCcEEEeeCCccccCCch---HHHhccCC-CCEEeccCCCCCCc--ccHHHHHhcc-CCCcE
Q 048040 93 -----VPRTL----RNFSGLEYLNLENSHLFSVGSL---EWLSHLSS-LRHLDLSYINLTKS--RDWFQVVAKL-RSLKT 156 (178)
Q Consensus 93 -----~~~~~----~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~-L~~L~l~~n~i~~~--~~~~~~~~~l-~~L~~ 156 (178)
++..+ ....++++|.+.+|.++..... ..+...++ +..+++..|.+.+. ......+..+ ..+++
T Consensus 187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhh
Confidence 12233 3466788888888886433211 11333344 66688888887754 2233445555 56788
Q ss_pred EEecCCCCCCCCC
Q 048040 157 FVLRSCALPPINP 169 (178)
Q Consensus 157 l~l~~n~~~~~~~ 169 (178)
++++.|.+.....
T Consensus 267 l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 267 LDLSRNSITEKGV 279 (478)
T ss_pred hhhhcCCccccch
Confidence 8888888775443
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.38 E-value=11 Score=17.01 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.5
Q ss_pred CcEEEeeCC
Q 048040 103 LEYLNLENS 111 (178)
Q Consensus 103 L~~L~l~~n 111 (178)
|+.|++++|
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 333333333
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.36 E-value=21 Score=35.53 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=22.1
Q ss_pred eccCCCCCccch-hccCCCCCcEEEeeCCccc
Q 048040 84 NLSCGAPLEVPR-TLRNFSGLEYLNLENSHLF 114 (178)
Q Consensus 84 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 114 (178)
+|++|.+..+|+ .|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 466777777755 5667778888888887763
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=45.81 E-value=15 Score=16.84 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=6.5
Q ss_pred CCEEeccCCCCCC
Q 048040 128 LRHLDLSYINLTK 140 (178)
Q Consensus 128 L~~L~l~~n~i~~ 140 (178)
|++|++....+.+
T Consensus 2 LKtL~L~~v~f~~ 14 (26)
T PF07723_consen 2 LKTLHLDSVVFSD 14 (26)
T ss_pred CeEEEeeEEEECC
Confidence 4555555544433
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.52 E-value=73 Score=32.23 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.5
Q ss_pred ccccccccchhhhhCCCCCCEEEccCCCCC
Q 048040 37 RRKFLKGTISPALLKLHDLRHLDLSNNDFG 66 (178)
Q Consensus 37 ~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~ 66 (178)
++|.|...-+..|..+.+|+.|+|++|++.
T Consensus 3 SnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 3 SNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 344777666678888889999999998875
Done!