Query 048040
Match_columns 178
No_of_seqs 116 out of 1308
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 09:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-23 9.1E-28 157.1 9.8 162 3-176 28-198 (313)
2 3e6j_A Variable lymphocyte rec 99.9 1E-20 3.4E-25 137.0 14.2 156 1-169 11-176 (229)
3 4fcg_A Uncharacterized protein 99.8 3.3E-21 1.1E-25 146.5 9.9 164 4-175 56-252 (328)
4 4eco_A Uncharacterized protein 99.8 8.7E-21 3E-25 155.6 10.6 54 2-64 60-116 (636)
5 3m19_A Variable lymphocyte rec 99.8 4.5E-20 1.6E-24 135.1 12.5 143 21-175 35-178 (251)
6 2o6q_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 136.2 12.1 164 6-174 2-203 (270)
7 2o6s_A Variable lymphocyte rec 99.8 7.1E-19 2.4E-23 125.2 14.0 150 8-169 6-165 (208)
8 4ecn_A Leucine-rich repeat pro 99.8 1.4E-19 4.9E-24 152.4 11.1 46 6-60 295-354 (876)
9 3rgz_A Protein brassinosteroid 99.8 1E-19 3.5E-24 152.1 9.5 168 2-175 32-246 (768)
10 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.4E-23 125.2 11.2 147 8-166 10-166 (220)
11 2o6q_A Variable lymphocyte rec 99.8 7.5E-18 2.6E-22 124.5 15.0 127 39-169 95-222 (270)
12 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.7E-23 142.0 11.0 144 21-175 52-196 (635)
13 2z80_A TOLL-like receptor 2, v 99.8 7.5E-19 2.6E-23 134.5 8.1 161 3-175 24-197 (353)
14 1ozn_A Reticulon 4 receptor; N 99.8 7.2E-18 2.5E-22 125.4 12.0 150 21-174 32-199 (285)
15 2z81_A CD282 antigen, TOLL-lik 99.8 9.5E-19 3.3E-23 140.7 7.8 156 8-175 3-171 (549)
16 2ell_A Acidic leucine-rich nuc 99.8 4.4E-18 1.5E-22 117.2 9.3 140 20-171 23-165 (168)
17 2v70_A SLIT-2, SLIT homolog 2 99.8 6E-18 2E-22 121.7 10.3 149 9-169 11-170 (220)
18 3rfs_A Internalin B, repeat mo 99.7 2.2E-17 7.4E-22 122.2 13.1 138 21-172 63-201 (272)
19 4fcg_A Uncharacterized protein 99.7 4.1E-18 1.4E-22 129.4 9.1 151 21-176 127-301 (328)
20 2xot_A Amphoterin-induced prot 99.7 6.8E-18 2.3E-22 129.7 10.2 155 9-175 18-186 (361)
21 3v47_A TOLL-like receptor 5B a 99.7 1.6E-17 5.5E-22 130.7 12.3 164 3-175 2-177 (455)
22 3rfs_A Internalin B, repeat mo 99.7 3.1E-17 1.1E-21 121.4 13.1 141 18-170 82-223 (272)
23 1p9a_G Platelet glycoprotein I 99.7 1.5E-17 5.3E-22 124.2 11.6 134 21-165 31-185 (290)
24 2z66_A Variable lymphocyte rec 99.7 4.1E-18 1.4E-22 127.9 8.1 158 8-175 6-198 (306)
25 3m19_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 119.7 12.8 135 21-167 59-194 (251)
26 2z62_A TOLL-like receptor 4, v 99.7 2.9E-17 9.9E-22 121.6 11.4 141 21-172 28-169 (276)
27 1ozn_A Reticulon 4 receptor; N 99.7 2.8E-17 9.6E-22 122.2 11.1 151 21-175 56-224 (285)
28 2je0_A Acidic leucine-rich nuc 99.7 1.1E-17 3.7E-22 113.1 8.0 130 21-161 17-149 (149)
29 3vq2_A TLR4, TOLL-like recepto 99.7 2.3E-17 7.9E-22 134.2 11.1 144 21-175 32-176 (606)
30 3zyj_A Leucine-rich repeat-con 99.7 5E-17 1.7E-21 127.8 12.7 158 11-173 45-228 (440)
31 1ogq_A PGIP-2, polygalacturona 99.7 1.8E-17 6.1E-22 125.1 9.3 130 40-175 136-267 (313)
32 3zyi_A Leucine-rich repeat-con 99.7 2.9E-17 9.9E-22 129.6 10.5 148 21-174 75-264 (452)
33 3e6j_A Variable lymphocyte rec 99.7 2.1E-16 7.3E-21 114.2 12.9 138 23-176 21-159 (229)
34 2z62_A TOLL-like receptor 4, v 99.7 6.6E-17 2.2E-21 119.7 9.7 113 20-141 51-164 (276)
35 2z66_A Variable lymphocyte rec 99.7 6.3E-17 2.2E-21 121.4 9.6 152 21-176 78-247 (306)
36 2v9t_B SLIT homolog 2 protein 99.7 1.1E-16 3.7E-21 115.1 10.2 138 24-176 14-152 (220)
37 2z7x_B TOLL-like receptor 1, v 99.7 1.5E-16 5.2E-21 127.2 12.1 140 21-176 21-164 (520)
38 3rgz_A Protein brassinosteroid 99.7 8.9E-17 3E-21 134.3 10.9 132 39-174 428-560 (768)
39 2id5_A Lingo-1, leucine rich r 99.7 2.7E-16 9.1E-21 124.7 13.0 151 21-175 32-199 (477)
40 1xku_A Decorin; proteoglycan, 99.7 1.1E-15 3.9E-20 115.7 15.5 147 8-166 30-185 (330)
41 3v47_A TOLL-like receptor 5B a 99.7 1.3E-16 4.5E-21 125.5 10.6 138 21-170 275-413 (455)
42 3t6q_A CD180 antigen; protein- 99.7 2.5E-16 8.5E-21 128.1 12.5 149 21-173 33-200 (606)
43 1wwl_A Monocyte differentiatio 99.7 1.6E-16 5.6E-21 119.7 10.4 138 21-168 95-244 (312)
44 4ezg_A Putative uncharacterize 99.7 1.1E-15 3.9E-20 107.8 13.8 129 21-167 44-174 (197)
45 3j0a_A TOLL-like receptor 5; m 99.7 8.3E-17 2.9E-21 135.7 9.1 153 10-174 15-170 (844)
46 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-16 9.6E-21 112.9 10.6 140 23-176 13-153 (220)
47 1ziw_A TOLL-like receptor 3; i 99.7 4E-16 1.4E-20 128.5 12.1 151 21-175 25-194 (680)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.8E-16 1.3E-20 126.2 11.4 140 21-176 52-195 (562)
49 3zyi_A Leucine-rich repeat-con 99.7 3.6E-16 1.2E-20 123.4 10.7 151 21-176 99-290 (452)
50 2o6s_A Variable lymphocyte rec 99.7 1.9E-16 6.5E-21 112.6 8.3 139 20-177 51-190 (208)
51 2z63_A TOLL-like receptor 4, v 99.7 1.8E-16 6.1E-21 127.9 9.2 142 21-173 28-170 (570)
52 3zyj_A Leucine-rich repeat-con 99.7 3.3E-16 1.1E-20 123.2 10.3 152 21-175 88-278 (440)
53 1p9a_G Platelet glycoprotein I 99.7 8E-16 2.7E-20 114.9 11.7 124 38-167 86-210 (290)
54 3vq2_A TLR4, TOLL-like recepto 99.7 2.2E-16 7.7E-21 128.4 9.3 146 20-174 55-203 (606)
55 2ft3_A Biglycan; proteoglycan, 99.7 6.6E-16 2.3E-20 117.2 11.1 94 9-113 33-135 (332)
56 4b8c_D Glucose-repressible alc 99.7 5.5E-17 1.9E-21 134.9 5.5 123 45-174 216-338 (727)
57 2xwt_C Thyrotropin receptor; s 99.7 4.3E-16 1.5E-20 113.0 9.5 133 20-166 30-170 (239)
58 3o6n_A APL1; leucine-rich repe 99.7 4.9E-16 1.7E-20 120.3 10.4 139 21-171 45-184 (390)
59 2z7x_B TOLL-like receptor 1, v 99.7 1.7E-15 5.6E-20 121.2 13.7 142 19-175 322-467 (520)
60 1h6u_A Internalin H; cell adhe 99.7 3.2E-15 1.1E-19 112.5 14.5 108 49-167 103-210 (308)
61 2z63_A TOLL-like receptor 4, v 99.7 4E-16 1.4E-20 125.8 9.8 145 20-175 51-200 (570)
62 4glp_A Monocyte differentiatio 99.7 2.9E-16 9.8E-21 118.2 8.2 144 23-175 93-247 (310)
63 1h6u_A Internalin H; cell adhe 99.6 4.4E-15 1.5E-19 111.8 14.5 125 21-166 63-187 (308)
64 4ezg_A Putative uncharacterize 99.6 1.2E-15 4E-20 107.7 10.6 129 20-166 65-195 (197)
65 1w8a_A SLIT protein; signaling 99.6 5.2E-16 1.8E-20 109.2 8.8 91 49-141 50-141 (192)
66 3oja_B Anopheles plasmodium-re 99.6 8.3E-16 2.8E-20 125.2 11.0 140 22-173 52-192 (597)
67 1h6t_A Internalin B; cell adhe 99.6 5.2E-15 1.8E-19 110.5 14.2 125 21-166 68-192 (291)
68 1h6t_A Internalin B; cell adhe 99.6 5.9E-15 2E-19 110.2 14.2 128 21-169 46-173 (291)
69 1xeu_A Internalin C; cellular 99.6 5.5E-15 1.9E-19 108.9 13.9 125 21-167 41-165 (263)
70 2wfh_A SLIT homolog 2 protein 99.6 1.7E-15 5.8E-20 106.8 10.1 107 54-165 32-139 (193)
71 3o6n_A APL1; leucine-rich repe 99.6 3.1E-15 1.1E-19 115.8 12.3 94 21-115 69-179 (390)
72 3oja_B Anopheles plasmodium-re 99.6 2E-15 6.8E-20 123.0 11.6 94 21-115 75-185 (597)
73 2z80_A TOLL-like receptor 2, v 99.6 2.5E-16 8.4E-21 120.5 5.8 140 20-171 75-241 (353)
74 1ziw_A TOLL-like receptor 3; i 99.6 3.3E-15 1.1E-19 123.0 12.8 135 35-173 31-166 (680)
75 4eco_A Uncharacterized protein 99.6 4.3E-16 1.5E-20 127.8 7.5 138 20-173 248-397 (636)
76 1w8a_A SLIT protein; signaling 99.6 1.8E-15 6.1E-20 106.5 9.6 131 24-169 11-143 (192)
77 4ecn_A Leucine-rich repeat pro 99.6 9.2E-16 3.1E-20 129.4 9.5 140 20-175 490-641 (876)
78 4fmz_A Internalin; leucine ric 99.6 1.4E-14 4.8E-19 110.3 15.2 139 20-169 176-328 (347)
79 4g8a_A TOLL-like receptor 4; l 99.6 1.6E-15 5.4E-20 123.3 10.6 145 21-174 76-223 (635)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.8E-15 1.3E-19 120.4 12.7 142 19-175 351-496 (562)
81 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-15 5.4E-20 105.3 9.0 133 20-165 18-153 (176)
82 3t6q_A CD180 antigen; protein- 99.6 1.1E-15 3.9E-20 124.2 9.3 133 40-174 387-522 (606)
83 1xku_A Decorin; proteoglycan, 99.6 5.9E-15 2E-19 111.8 12.5 149 21-174 100-285 (330)
84 2o6r_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 103.2 10.5 123 9-141 7-139 (177)
85 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.6E-20 102.7 7.8 116 51-169 15-130 (149)
86 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 100.9 12.5 133 22-169 8-141 (177)
87 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.6E-20 121.9 8.2 119 40-165 131-250 (487)
88 2ell_A Acidic leucine-rich nuc 99.6 2.5E-15 8.6E-20 103.3 9.0 124 50-176 21-147 (168)
89 1wwl_A Monocyte differentiatio 99.6 1.8E-15 6.2E-20 114.0 8.6 140 20-171 120-271 (312)
90 1xeu_A Internalin C; cellular 99.6 4.3E-15 1.5E-19 109.5 10.4 130 20-171 62-191 (263)
91 3o53_A Protein LRIM1, AGAP0063 99.6 8.2E-16 2.8E-20 116.1 6.6 119 40-165 131-250 (317)
92 2xwt_C Thyrotropin receptor; s 99.6 1.1E-15 3.7E-20 110.9 6.7 148 21-175 55-228 (239)
93 3oja_A Leucine-rich immune mol 99.6 4.1E-15 1.4E-19 118.5 10.0 145 20-175 79-236 (487)
94 1dce_A Protein (RAB geranylger 99.6 8.6E-15 2.9E-19 118.6 12.0 108 55-169 443-550 (567)
95 2ast_B S-phase kinase-associat 99.6 1.5E-15 5.2E-20 115.0 7.0 143 21-173 93-244 (336)
96 1m9s_A Internalin B; cell inva 99.6 2E-14 6.8E-19 117.3 13.8 126 20-166 64-189 (605)
97 3j0a_A TOLL-like receptor 5; m 99.6 4E-15 1.4E-19 125.5 10.1 142 20-172 47-194 (844)
98 4b8c_D Glucose-repressible alc 99.6 8.8E-16 3E-20 127.7 6.0 141 21-176 224-365 (727)
99 2id5_A Lingo-1, leucine rich r 99.6 6.1E-15 2.1E-19 116.8 10.4 150 21-174 128-318 (477)
100 4fmz_A Internalin; leucine ric 99.6 1.8E-14 6E-19 109.7 12.5 144 19-175 153-310 (347)
101 1o6v_A Internalin A; bacterial 99.6 2.7E-14 9.3E-19 113.0 14.0 110 49-169 261-370 (466)
102 2z81_A CD282 antigen, TOLL-lik 99.6 1.9E-14 6.5E-19 115.7 13.2 143 20-176 333-497 (549)
103 2xot_A Amphoterin-induced prot 99.6 5.7E-15 1.9E-19 113.4 9.6 135 20-166 63-203 (361)
104 2ft3_A Biglycan; proteoglycan, 99.6 1.7E-14 5.8E-19 109.4 11.7 150 21-175 102-287 (332)
105 3o53_A Protein LRIM1, AGAP0063 99.6 2.1E-15 7.3E-20 113.8 6.2 57 21-88 34-90 (317)
106 1m9s_A Internalin B; cell inva 99.6 2.1E-14 7.2E-19 117.1 12.4 134 19-173 85-218 (605)
107 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.9E-22 118.2 -6.1 118 46-170 41-158 (198)
108 2wfh_A SLIT homolog 2 protein 99.6 4.7E-14 1.6E-18 99.3 11.8 123 8-141 9-141 (193)
109 2ast_B S-phase kinase-associat 99.5 1.3E-14 4.5E-19 109.9 7.2 134 20-163 117-258 (336)
110 4glp_A Monocyte differentiatio 99.5 1.7E-14 5.7E-19 108.5 7.1 134 20-165 116-264 (310)
111 1o6v_A Internalin A; bacterial 99.5 3.8E-13 1.3E-17 106.4 14.6 107 49-166 239-345 (466)
112 3goz_A Leucine-rich repeat-con 99.5 1E-13 3.5E-18 106.4 10.4 140 21-169 22-184 (362)
113 1dce_A Protein (RAB geranylger 99.5 1.1E-13 3.7E-18 112.2 10.3 125 22-159 442-567 (567)
114 2ca6_A RAN GTPase-activating p 99.5 3E-14 1E-18 110.1 6.5 40 50-89 91-133 (386)
115 1a9n_A U2A', U2A'; complex (nu 99.5 6.6E-14 2.3E-18 97.0 7.5 114 48-167 14-128 (176)
116 3cvr_A Invasion plasmid antige 99.5 9.8E-14 3.4E-18 112.4 9.3 136 5-165 39-193 (571)
117 3cvr_A Invasion plasmid antige 99.5 5.4E-14 1.9E-18 113.9 7.5 109 51-175 138-253 (571)
118 3bz5_A Internalin-J, INLJ; leu 99.5 7.5E-13 2.6E-17 104.7 13.3 101 21-141 42-142 (457)
119 3bz5_A Internalin-J, INLJ; leu 99.5 1.2E-12 4.2E-17 103.5 13.8 139 20-175 105-256 (457)
120 3g39_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 92.2 8.9 107 23-142 11-118 (170)
121 3g39_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 91.3 9.7 99 9-116 9-117 (170)
122 4ay9_X Follicle-stimulating ho 99.4 3E-13 1E-17 103.4 8.3 158 9-175 9-225 (350)
123 3goz_A Leucine-rich repeat-con 99.4 3.3E-13 1.1E-17 103.5 8.4 129 40-169 91-242 (362)
124 2ca6_A RAN GTPase-activating p 99.4 3E-13 1E-17 104.5 8.1 123 47-169 181-320 (386)
125 2r9u_A Variable lymphocyte rec 99.4 1E-12 3.4E-17 91.0 9.0 107 23-142 14-121 (174)
126 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 89.5 10.4 85 21-114 33-118 (174)
127 1ds9_A Outer arm dynein; leuci 99.4 3.9E-15 1.3E-19 105.1 -3.7 130 21-165 48-185 (198)
128 3g06_A SSPH2 (leucine-rich rep 99.4 5.8E-13 2E-17 108.9 8.4 86 78-174 221-306 (622)
129 1jl5_A Outer protein YOPM; leu 99.4 2.6E-12 8.9E-17 101.5 11.2 110 40-166 142-251 (454)
130 3g06_A SSPH2 (leucine-rich rep 99.4 7.2E-13 2.5E-17 108.4 7.6 78 52-142 80-157 (622)
131 1jl5_A Outer protein YOPM; leu 99.4 1.2E-11 4.1E-16 97.7 13.4 61 49-115 191-251 (454)
132 1z7x_W Ribonuclease inhibitor; 99.3 4E-12 1.4E-16 100.0 6.2 121 45-167 276-413 (461)
133 3un9_A NLR family member X1; l 99.3 1.1E-12 3.7E-17 101.2 2.6 143 21-172 101-259 (372)
134 1z7x_W Ribonuclease inhibitor; 99.3 1.2E-11 4E-16 97.3 7.6 45 122-166 166-213 (461)
135 2ifg_A High affinity nerve gro 99.2 3.7E-11 1.3E-15 91.4 9.1 97 41-142 21-119 (347)
136 3un9_A NLR family member X1; l 99.2 1.5E-11 5.3E-16 94.8 4.6 139 21-167 72-226 (372)
137 4ay9_X Follicle-stimulating ho 99.2 1.5E-10 5E-15 88.4 9.1 142 21-169 54-240 (350)
138 2ifg_A High affinity nerve gro 99.1 1.1E-10 3.8E-15 88.8 8.2 106 8-123 7-125 (347)
139 3ogk_B Coronatine-insensitive 99.1 1.1E-10 3.9E-15 94.4 6.4 141 21-170 378-531 (592)
140 3ogk_B Coronatine-insensitive 98.9 1.8E-09 6.3E-14 87.3 7.6 17 50-66 189-205 (592)
141 3sb4_A Hypothetical leucine ri 98.9 1.2E-09 4.2E-14 82.6 6.1 94 77-175 225-320 (329)
142 1io0_A Tropomodulin; LRR prote 98.9 1.4E-09 4.9E-14 75.8 5.2 124 42-165 25-164 (185)
143 2p1m_B Transport inhibitor res 98.9 2.2E-09 7.5E-14 86.8 5.3 125 40-165 383-519 (594)
144 3sb4_A Hypothetical leucine ri 98.8 7.7E-09 2.6E-13 78.2 7.3 71 100-175 225-296 (329)
145 2p1m_B Transport inhibitor res 98.7 1.2E-08 4.1E-13 82.5 5.8 63 50-113 102-168 (594)
146 2ra8_A Uncharacterized protein 98.6 6.4E-08 2.2E-12 74.3 7.2 114 52-167 192-322 (362)
147 1io0_A Tropomodulin; LRR prote 98.6 3.4E-08 1.1E-12 68.8 5.1 120 19-142 34-167 (185)
148 3rw6_A Nuclear RNA export fact 98.6 3.8E-09 1.3E-13 77.7 -0.5 83 75-158 167-257 (267)
149 3e4g_A ATP synthase subunit S, 98.5 2E-07 6.9E-12 64.2 5.3 101 53-155 61-170 (176)
150 3rw6_A Nuclear RNA export fact 98.4 3.6E-07 1.2E-11 67.1 4.7 84 49-133 166-258 (267)
151 3e4g_A ATP synthase subunit S, 98.4 6.8E-07 2.3E-11 61.6 5.7 85 77-163 60-150 (176)
152 2ra8_A Uncharacterized protein 98.2 4.1E-06 1.4E-10 64.2 8.0 141 21-167 139-294 (362)
153 4fdw_A Leucine rich hypothetic 98.2 2.8E-06 9.7E-11 66.0 7.2 116 53-176 248-369 (401)
154 4fdw_A Leucine rich hypothetic 98.2 6.8E-06 2.3E-10 63.8 8.8 147 20-175 179-345 (401)
155 1pgv_A TMD-1, tropomodulin TMD 97.7 7.4E-05 2.5E-09 52.3 6.0 120 44-163 32-168 (197)
156 4h09_A Hypothetical leucine ri 97.2 0.0011 3.8E-08 50.6 7.2 119 48-174 235-354 (379)
157 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0022 7.7E-08 44.7 7.3 92 72-163 35-137 (197)
158 3rfe_A Platelet glycoprotein I 96.9 0.0012 4.3E-08 42.9 4.8 58 81-141 11-70 (130)
159 4gt6_A Cell surface protein; l 96.6 0.0052 1.8E-07 47.2 6.6 61 73-136 306-367 (394)
160 4gt6_A Cell surface protein; l 96.5 0.011 3.7E-07 45.4 8.1 109 47-163 259-368 (394)
161 3rfe_A Platelet glycoprotein I 96.4 0.0068 2.3E-07 39.3 5.3 56 24-90 11-67 (130)
162 4fs7_A Uncharacterized protein 96.0 0.017 5.8E-07 44.3 6.6 104 49-162 272-376 (394)
163 4fs7_A Uncharacterized protein 96.0 0.015 5.3E-07 44.6 6.2 37 47-85 88-124 (394)
164 4h09_A Hypothetical leucine ri 95.9 0.033 1.1E-06 42.4 7.8 120 48-175 212-332 (379)
165 2lz0_A Uncharacterized protein 40.3 48 0.0016 19.8 4.2 38 72-110 14-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.7e-23 Score=157.07 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=120.8
Q ss_pred CcCCCcee--eeeeeecCCC--CCeeEEEecCCcccccccccccc--cchhhhhCCCCCCEEEccC-CCCCCCCchhhhc
Q 048040 3 DEKRDCCK--WRGVHCRNTT--GHVKVLNLRTSDYEFARRKFLKG--TISPALLKLHDLRHLDLSN-NDFGGSPIPEFIG 75 (178)
Q Consensus 3 ~~~~~~c~--~~~~~~~~~~--~~l~~l~l~~~~~~~~~~~~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~l~ 75 (178)
+.+.++|. |.||.|.... ++|+.|+++++ .+.+ .+|+.+..+++|++|++++ |.+.+. .|..+.
T Consensus 28 ~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~--------~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~ 98 (313)
T 1ogq_A 28 LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL--------NLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIA 98 (313)
T ss_dssp CTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC--------CCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGG
T ss_pred CCCCCCCcCCCcceEeCCCCCCceEEEEECCCC--------CccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHh
Confidence 35678998 9999997654 78999999999 6777 7777888888888888884 777765 777788
Q ss_pred ccCCCcEEeccCCCCC-ccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccC-C
Q 048040 76 SLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR-S 153 (178)
Q Consensus 76 ~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~-~ 153 (178)
.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+. .+..++.+++|++|++++|.+++.. +..+..++ .
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~ 175 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKL 175 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTT
T ss_pred cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhc
Confidence 8888888888887554 5677777888888888888887533 2344777788888888888876432 22566666 7
Q ss_pred CcEEEecCCCCCCCCCccccccc
Q 048040 154 LKTFVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 154 L~~l~l~~n~~~~~~~~~~~~l~ 176 (178)
|++|++++|.+.+.+|..++.++
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC
T ss_pred CcEEECcCCeeeccCChHHhCCc
Confidence 77788877777777777666543
No 2
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1e-20 Score=137.01 Aligned_cols=156 Identities=20% Similarity=0.224 Sum_probs=135.0
Q ss_pred CCCcCCCceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCch
Q 048040 1 REDEKRDCCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIP 71 (178)
Q Consensus 1 ~~~~~~~~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 71 (178)
++|.+...|.|.++.|... ...++.|++++| .+.+..|..+..+.+|+.|++++|.++.. .+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~ 81 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDN--------QITKLEPGVFDSLINLKELYLGSNQLGAL-PV 81 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred ccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCC--------ccCccCHHHhhCccCCcEEECCCCCCCCc-Ch
Confidence 4688999999999999753 256899999999 78888888899999999999999999885 45
Q ss_pred hhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhc
Q 048040 72 EFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAK 150 (178)
Q Consensus 72 ~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 150 (178)
..+..+++|++|++++|.+..++. .+..+++|+.|++++|++...+ ..+..+++|++|++++|.++..+. ..+..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~ 157 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIERLTHLTHLALDQNQLKSIPH--GAFDR 157 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGGGCTTCSEEECCSSCCCCCCT--TTTTT
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC--cccccCCCCCEEECCCCcCCccCH--HHHhC
Confidence 667899999999999998777765 5789999999999999987554 447899999999999999998863 46889
Q ss_pred cCCCcEEEecCCCCCCCCC
Q 048040 151 LRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 151 l~~L~~l~l~~n~~~~~~~ 169 (178)
+++|+.|++++|++...++
T Consensus 158 l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTCCEEECTTSCBCTTBG
T ss_pred CCCCCEEEeeCCCccCCcc
Confidence 9999999999999987654
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.3e-21 Score=146.48 Aligned_cols=164 Identities=22% Similarity=0.295 Sum_probs=118.4
Q ss_pred cCCCceeeeeeeecC--------CCCCeeEEEecCCccc---------------ccccccccccchhhhhCCCCCCEEEc
Q 048040 4 EKRDCCKWRGVHCRN--------TTGHVKVLNLRTSDYE---------------FARRKFLKGTISPALLKLHDLRHLDL 60 (178)
Q Consensus 4 ~~~~~c~~~~~~~~~--------~~~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~l~~L~~L~l 60 (178)
...++|.|.|+.|.. ...+++.|+++++.+. .+++|.+. .+|..+..+.+|++|++
T Consensus 56 ~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L 134 (328)
T 4fcg_A 56 NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134 (328)
T ss_dssp TCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE
T ss_pred ccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC
Confidence 367889999999842 3478899999998763 44556666 67777777888888888
Q ss_pred cCCCCCCCCchhhhcccCCCcEEeccCC-CCCccchhccC---------CCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040 61 SNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEVPRTLRN---------FSGLEYLNLENSHLFSVGSLEWLSHLSSLRH 130 (178)
Q Consensus 61 ~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (178)
++|.++. +|..+..+++|++|++++| ..+.+|..+.. +++|+.|++++|++... +..++.+++|++
T Consensus 135 s~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~ 210 (328)
T 4fcg_A 135 ARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKS 210 (328)
T ss_dssp ESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--CGGGGGCTTCCE
T ss_pred CCCcccc--CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--hHhhcCCCCCCE
Confidence 8888874 6777778888888888775 55666655433 77777777777776533 344777778888
Q ss_pred EeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 131 LDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 131 L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
|++++|.+++.+. .+..+++|++|++++|.+.+.+|..++.+
T Consensus 211 L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 211 LKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp EEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred EEccCCCCCcCch---hhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 8888888777654 56777777777777777777777766554
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=8.7e-21 Score=155.59 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=40.8
Q ss_pred CCcCCCceee---eeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC
Q 048040 2 EDEKRDCCKW---RGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND 64 (178)
Q Consensus 2 ~~~~~~~c~~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~ 64 (178)
|+.++++|.| .||.|.. .++|+.|+|+++ .+.|.+|+.+..+++|+.|++++|.
T Consensus 60 W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~--------~l~g~lp~~l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 60 WNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGF--------GASGRVPDAIGQLTELEVLALGSHG 116 (636)
T ss_dssp CCCSSCGGGTTCCTTEEECT-TCCEEEEECTTS--------CCEEEECGGGGGCTTCCEEESCCGG
T ss_pred CCCCCCcccccCCCCeEEcC-CCCEEEEEecCc--------ccCCcCChHHhcCccceEEECcCCc
Confidence 4567899999 9999965 389999999999 5666666666666666666666653
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=4.5e-20 Score=135.13 Aligned_cols=143 Identities=21% Similarity=0.253 Sum_probs=110.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 99 (178)
..++.|++++| .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+..
T Consensus 35 ~~l~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 105 (251)
T 3m19_A 35 ADTEKLDLQST--------GLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDH 105 (251)
T ss_dssp TTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCCEEEccCC--------CcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcc
Confidence 44667777777 77777777788888889999988888885 56677888888888888887666654 5678
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+++|+.|++++|++...+. ..+..+++|++|++++|.++..+. ..+..+++|++|++++|++.+..+..+..+
T Consensus 106 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCH--HHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 8888888888888765542 336778888888888888887752 357788888888888888887777666654
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=5.2e-20 Score=136.19 Aligned_cols=164 Identities=22% Similarity=0.262 Sum_probs=79.2
Q ss_pred CCceeeeeeeecCCCCCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh
Q 048040 6 RDCCKWRGVHCRNTTGHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE 72 (178)
Q Consensus 6 ~~~c~~~~~~~~~~~~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 72 (178)
.++|.|.|+.|... ...+.++++++.+. .++.|.+.+..+..+..+++|++|++++|.++.. .+.
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~ 79 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAG 79 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTT
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-Chh
Confidence 47888888877531 22333444444332 1222244433333455555555555555555542 223
Q ss_pred hhcccCCCcEEeccCCCCCccch-------------------------hccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040 73 FIGSLSKLRYLNLSCGAPLEVPR-------------------------TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127 (178)
Q Consensus 73 ~l~~l~~L~~L~l~~~~~~~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (178)
.+..+++|++|++++|.+..+|. .+..+++|+.|++++|.+...+. ..+..+++
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 158 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTS 158 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcc
Confidence 33445555555555554433332 23444455555555554433321 22444555
Q ss_pred CCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
|++|++++|.++..+. ..+..+++|++|++++|.+++..+..+..
T Consensus 159 L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cceeEecCCcCcEeCh--hHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 5555555555555431 23455556666666666665544444433
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=7.1e-19 Score=125.24 Aligned_cols=150 Identities=25% Similarity=0.332 Sum_probs=124.8
Q ss_pred ceeeeeeeecCCC---------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040 8 CCKWRGVHCRNTT---------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS 78 (178)
Q Consensus 8 ~c~~~~~~~~~~~---------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 78 (178)
.|.|.++.|.... ..++.|++++| .+.+..+..+..+++|+.|++++|.++.. .+..+..++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 76 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETN--------SLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLT 76 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCC--------ccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCC
Confidence 5789999997532 56899999999 67766666788999999999999999985 556678999
Q ss_pred CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040 79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157 (178)
Q Consensus 79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 157 (178)
+|++|++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|++|++++|.+++.+. ..+..+++|++|
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L 153 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYI 153 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEE
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH--HHhccCCCccEE
Confidence 99999999997777765 57899999999999999865542 346889999999999999998863 457889999999
Q ss_pred EecCCCCCCCCC
Q 048040 158 VLRSCALPPINP 169 (178)
Q Consensus 158 ~l~~n~~~~~~~ 169 (178)
++++|++.+.+|
T Consensus 154 ~l~~N~~~~~~~ 165 (208)
T 2o6s_A 154 WLHDNPWDCTCP 165 (208)
T ss_dssp ECCSCCBCCCTT
T ss_pred EecCCCeecCCC
Confidence 999998876555
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.4e-19 Score=152.44 Aligned_cols=46 Identities=30% Similarity=0.453 Sum_probs=34.0
Q ss_pred CCc--eee------------eeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEc
Q 048040 6 RDC--CKW------------RGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDL 60 (178)
Q Consensus 6 ~~~--c~~------------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l 60 (178)
.++ |.| .||.|.. .++|+.|+|+++ .+.|.+|+.+..+++|+.|+|
T Consensus 295 ~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--------~L~G~ip~~l~~L~~L~~LdL 354 (876)
T 4ecn_A 295 NTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--------GAKGRVPDAIGQLTELKVLSF 354 (876)
T ss_dssp SCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT--------CCEEEECGGGGGCTTCCEEES
T ss_pred ccCCccccccccccccccCcCceEecC-CCCEEEEECccC--------CCCCcCchHHhccccceEeee
Confidence 456 999 9999975 689999999999 555555555555555555555
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=1e-19 Score=152.09 Aligned_cols=168 Identities=21% Similarity=0.292 Sum_probs=96.8
Q ss_pred CC-cCCCceeeeeeeecCCCCCeeEEEecCCccccc----------------ccccccccc--hhhhhCCCCCCEEEccC
Q 048040 2 ED-EKRDCCKWRGVHCRNTTGHVKVLNLRTSDYEFA----------------RRKFLKGTI--SPALLKLHDLRHLDLSN 62 (178)
Q Consensus 2 ~~-~~~~~c~~~~~~~~~~~~~l~~l~l~~~~~~~~----------------~~~~l~~~~--~~~l~~l~~L~~L~l~~ 62 (178)
+| .+.+||.|.||.|. .++|+.|+++++.+... .++.+.+.. |..+..+++|++|++++
T Consensus 32 ~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~ 109 (768)
T 3rgz_A 32 DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109 (768)
T ss_dssp TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCS
T ss_pred CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCC
Confidence 45 57899999999997 58999999999854210 111122222 24556667777777777
Q ss_pred CCCCCCCchh--hhcccCCCcEEeccCCC-CCccchhc-cCCCCCcEEEeeCCccccCCchHH--H--------------
Q 048040 63 NDFGGSPIPE--FIGSLSKLRYLNLSCGA-PLEVPRTL-RNFSGLEYLNLENSHLFSVGSLEW--L-------------- 122 (178)
Q Consensus 63 n~~~~~~~~~--~l~~l~~L~~L~l~~~~-~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~--~-------------- 122 (178)
|.+.+. +|. .+..+++|++|++++|. .+..|..+ ..+++|++|++++|++.+...... +
T Consensus 110 n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 110 NSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 777654 555 66677777777777663 22333332 455666666666665533321111 2
Q ss_pred --------hccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 123 --------SHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 123 --------~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
..+++|++|++++|.+++... .++.+++|++|++++|.+.+.+|..++.+
T Consensus 189 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 246 (768)
T 3rgz_A 189 KISGDVDVSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTC 246 (768)
T ss_dssp EEESCCBCTTCTTCCEEECCSSCCCSCCC---BCTTCCSCCEEECCSSCCCSCHHHHTTTC
T ss_pred cccccCCcccCCcCCEEECcCCcCCCCCc---ccccCCCCCEEECcCCcCCCcccHHHhcC
Confidence 344455555555555554432 25555666666666666665555554443
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.3e-18 Score=125.20 Aligned_cols=147 Identities=22% Similarity=0.301 Sum_probs=124.0
Q ss_pred ceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040 8 CCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS 78 (178)
Q Consensus 8 ~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 78 (178)
.|.|..+.|... ...++.|++++| .+.+..+..|..+++|+.|++++|.++.. .+..|..++
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n--------~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~ 80 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQN--------TIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLR 80 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSS--------CCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCS
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCC--------cCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCc
Confidence 367888888642 246899999999 67766666788999999999999999985 688999999
Q ss_pred CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040 79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157 (178)
Q Consensus 79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 157 (178)
+|++|++++|.+..+|. .+..+++|+.|++++|++.... +..+..+++|++|++++|.++..+. ..+..+++|+.|
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L 157 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTM 157 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEE
Confidence 99999999998888876 4688999999999999986654 3458889999999999999998863 467889999999
Q ss_pred EecCCCCCC
Q 048040 158 VLRSCALPP 166 (178)
Q Consensus 158 ~l~~n~~~~ 166 (178)
++++|++..
T Consensus 158 ~L~~N~~~c 166 (220)
T 2v9t_B 158 HLAQNPFIC 166 (220)
T ss_dssp ECCSSCEEC
T ss_pred EeCCCCcCC
Confidence 999998864
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=7.5e-18 Score=124.55 Aligned_cols=127 Identities=24% Similarity=0.308 Sum_probs=98.5
Q ss_pred ccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCC
Q 048040 39 KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVG 117 (178)
Q Consensus 39 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 117 (178)
|.+.+..+..+..+.+|+.|++++|.++.. .+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|++...+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 344443444556667777777777777664 45567788889999998887777765 4788999999999999986654
Q ss_pred chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 118 SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 118 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
. ..+..+++|++|++++|.++..+. ..+..+++|+.|++++|++....+
T Consensus 174 ~-~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 E-GAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp T-TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred h-hHhccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEecCCCeeCCCc
Confidence 3 347889999999999999998863 467889999999999999886554
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.1e-18 Score=141.97 Aligned_cols=144 Identities=21% Similarity=0.159 Sum_probs=123.0
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 99 (178)
..+++|||++| .+++..+..|.++++|++|+|++|.++.. .+..|..+++|++|++++|.+..+|. .|..
T Consensus 52 ~~~~~LdLs~N--------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCC--------CCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 56899999999 77776677899999999999999999985 56679999999999999998888865 6899
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+++|++|++++|++.+.+. ..++.+++|++|++++|.++..+. +..++.+++|++|++++|++.+..|..+..+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCC-chhhccchhhhhhcccCccccccccccccch
Confidence 9999999999999866542 337889999999999999987532 3478899999999999999998888877654
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=7.5e-19 Score=134.49 Aligned_cols=161 Identities=23% Similarity=0.343 Sum_probs=102.3
Q ss_pred CcCCCceeeeeeeecCC-----------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCch
Q 048040 3 DEKRDCCKWRGVHCRNT-----------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIP 71 (178)
Q Consensus 3 ~~~~~~c~~~~~~~~~~-----------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 71 (178)
+.....|.|.++ |... ...+++|++++| .+.+..+..+..+++|+.|++++|.++.. .+
T Consensus 24 ~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~ 93 (353)
T 2z80_A 24 NQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN--------RITYISNSDLQRCVNLQALVLTSNGINTI-EE 93 (353)
T ss_dssp ---CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CT
T ss_pred CccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC--------cCcccCHHHhccCCCCCEEECCCCccCcc-CH
Confidence 446678888887 5422 247899999999 55544444566777777777777777664 45
Q ss_pred hhhcccCCCcEEeccCCCCCccchh-ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHh
Q 048040 72 EFIGSLSKLRYLNLSCGAPLEVPRT-LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVA 149 (178)
Q Consensus 72 ~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~ 149 (178)
..+..+++|++|++++|.+..++.. +..+++|+.|++++|++...+....+..+++|++|++++|. ++..+ +..+.
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~ 171 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFA 171 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTT
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC--HHHcc
Confidence 5666777777777777766656543 66677777777777776544321235666777777777763 44443 23556
Q ss_pred ccCCCcEEEecCCCCCCCCCcccccc
Q 048040 150 KLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 150 ~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
++++|++|++++|.+.+..|..++.+
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred CCCCCCEEECCCCCcCccCHHHHhcc
Confidence 66677777777777666666655543
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=7.2e-18 Score=125.40 Aligned_cols=150 Identities=22% Similarity=0.302 Sum_probs=85.9
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCC-CCCCCchhhhcccCCCcEE
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSLSKLRYL 83 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L 83 (178)
..++.|++++|.+. .++.|.+.+..+..+..+++|++|++++|. +... .+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEE
Confidence 45777777777653 233445555455566666666676766665 5553 35556666666666
Q ss_pred eccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040 84 NLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162 (178)
Q Consensus 84 ~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n 162 (178)
++++|.+..+ +..+..+++|+.|++++|++...+ ...++.+++|++|++++|.++..+. ..+..+++|++|++++|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSS
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEECCCCcccccCH--HHhcCccccCEEECCCC
Confidence 6666644444 345556666666666666654333 1224556666666666666655541 23455555566666655
Q ss_pred CCCCCCCccccc
Q 048040 163 ALPPINPSFICG 174 (178)
Q Consensus 163 ~~~~~~~~~~~~ 174 (178)
.+.+..|..+..
T Consensus 188 ~l~~~~~~~~~~ 199 (285)
T 1ozn_A 188 RVAHVHPHAFRD 199 (285)
T ss_dssp CCCEECTTTTTT
T ss_pred cccccCHhHccC
Confidence 555555554443
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=9.5e-19 Score=140.72 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=127.5
Q ss_pred ceeeeeeeecCC-----------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcc
Q 048040 8 CCKWRGVHCRNT-----------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGS 76 (178)
Q Consensus 8 ~c~~~~~~~~~~-----------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~ 76 (178)
.|.|.++ |... ...+++|++++| .+.+..|..+..+++|++|++++|.++.. .+..+..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN--------KITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS--------CCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCC--------ccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence 5888887 6532 247999999999 77777777889999999999999999885 5678899
Q ss_pred cCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCC
Q 048040 77 LSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSL 154 (178)
Q Consensus 77 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L 154 (178)
+++|++|++++|.+...+. .+..+++|++|++++|++.+...+..++.+++|++|++++|. +...+ +..+.++++|
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L 150 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSL 150 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC--Hhhhhccccc
Confidence 9999999999997766655 589999999999999998765444557889999999999998 44444 2467889999
Q ss_pred cEEEecCCCCCCCCCcccccc
Q 048040 155 KTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 155 ~~l~l~~n~~~~~~~~~~~~l 175 (178)
++|++++|.+.+..|..++.+
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTC
T ss_pred CeeeccCCcccccChhhhhcc
Confidence 999999999998888877654
No 16
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=4.4e-18 Score=117.24 Aligned_cols=140 Identities=24% Similarity=0.242 Sum_probs=118.8
Q ss_pred CCCeeEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTL 97 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~ 97 (178)
...++.|++++| .+. +.+|..+..+++|+.|++++|.++. . ..+..+++|++|++++|.+.. +|..+
T Consensus 23 ~~~L~~L~l~~n--------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 91 (168)
T 2ell_A 23 PAAVRELVLDNC--------KSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLA 91 (168)
T ss_dssp TTSCSEEECCSC--------BCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred cccCCEEECCCC--------CCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHH
Confidence 477999999999 666 6778778899999999999999987 4 778899999999999997666 67777
Q ss_pred cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEecCCCCCCCCCcc
Q 048040 98 RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVLRSCALPPINPSF 171 (178)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~ 171 (178)
..+++|+.|++++|++.+.+....+..+++|++|++++|.+++.+.+ ...+..+++|++|++++|.+.. +|+.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~ 165 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE-APDS 165 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB-CCSS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh-cccc
Confidence 77999999999999997765546688999999999999999988632 2478899999999999999875 4443
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=121.69 Aligned_cols=149 Identities=22% Similarity=0.212 Sum_probs=118.2
Q ss_pred eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccch-hhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040 9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTIS-PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS 78 (178)
Q Consensus 9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 78 (178)
|.|..+.|... ...++.|++++| .+.+..+ ..+..+++|+.|++++|.++.. .+..|..++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N--------~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~ 81 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNN--------EFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGAS 81 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSS--------CCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCC--------cCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCC
Confidence 56777777532 245678888888 6665544 3578899999999999999985 566889999
Q ss_pred CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040 79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157 (178)
Q Consensus 79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 157 (178)
+|++|++++|.+..++. .+..+++|+.|++++|++.... +..+..+++|++|++++|.+++.+ +..+..+++|+.|
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L 158 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTL 158 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEE
Confidence 99999999997776654 6889999999999999986553 344788899999999999998884 2478889999999
Q ss_pred EecCCCCCCCCC
Q 048040 158 VLRSCALPPINP 169 (178)
Q Consensus 158 ~l~~n~~~~~~~ 169 (178)
++++|++...++
T Consensus 159 ~L~~N~l~c~c~ 170 (220)
T 2v70_A 159 NLLANPFNCNCY 170 (220)
T ss_dssp ECCSCCEECSGG
T ss_pred EecCcCCcCCCc
Confidence 999999875443
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=2.2e-17 Score=122.24 Aligned_cols=138 Identities=27% Similarity=0.347 Sum_probs=65.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 99 (178)
..++.|++++|.+ .+. +.+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+..
T Consensus 63 ~~L~~L~l~~n~l--------~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 63 PNVRYLALGGNKL--------HDI--SALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp TTCCEEECTTSCC--------CCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCCcEEECCCCCC--------CCc--hhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 5566777777633 321 2344455555555555555543 33334455555555555554433332 2444
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI 172 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 172 (178)
+++|+.|++++|++.+.+ +..++.+++|++|++++|.+++.+. ..+..+++|++|++++|.+.+.++..+
T Consensus 132 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLPE--GVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccCH--HHhcCCccCCEEECCCCcCCccCHHHH
Confidence 555555555555543322 1223444555555555555544431 233444555555555555554444433
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=4.1e-18 Score=129.44 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=98.5
Q ss_pred CCeeEEEecCCccc---------------ccccccccccchhhhhC---------CCCCCEEEccCCCCCCCCchhhhcc
Q 048040 21 GHVKVLNLRTSDYE---------------FARRKFLKGTISPALLK---------LHDLRHLDLSNNDFGGSPIPEFIGS 76 (178)
Q Consensus 21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~~~l~~---------l~~L~~L~l~~n~~~~~~~~~~l~~ 76 (178)
..++.|++++|.+. .+++|.+.+.+|..+.. +++|++|++++|.++. +|..+..
T Consensus 127 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~~ 204 (328)
T 4fcg_A 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIAN 204 (328)
T ss_dssp TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGGG
T ss_pred CCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhcC
Confidence 56788888887542 22333444455544332 6666666666666663 5666677
Q ss_pred cCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcE
Q 048040 77 LSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKT 156 (178)
Q Consensus 77 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~ 156 (178)
+++|++|++++|.+..+|..+..+++|+.|++++|++.+. .+..++.+++|++|++++|.+.+.. +..+..+++|++
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~ 281 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEK 281 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBC--CTTGGGCTTCCE
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhc--chhhhcCCCCCE
Confidence 7777777777776666666666777777777777665333 2334666777777777777665542 235777888888
Q ss_pred EEecCCCCCCCCCccccccc
Q 048040 157 FVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 157 l~l~~n~~~~~~~~~~~~l~ 176 (178)
|++++|.+.+.+|+.++.++
T Consensus 282 L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSC
T ss_pred EeCCCCCchhhccHHHhhcc
Confidence 88888888888888777664
No 20
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=6.8e-18 Score=129.72 Aligned_cols=155 Identities=23% Similarity=0.262 Sum_probs=123.1
Q ss_pred eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhh-CCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040 9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALL-KLHDLRHLDLSNNDFGGSPIPEFIGSLS 78 (178)
Q Consensus 9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 78 (178)
|.+..+.|... ...++.|++++| .+.+..+..+. .+.+|+.|++++|.++.. .+..|..++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N--------~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~ 88 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHN--------NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVP 88 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSS--------CCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCC--------CCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCC
Confidence 45666666542 245788999998 67766666666 899999999999999985 567799999
Q ss_pred CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHH---hccCCC
Q 048040 79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVV---AKLRSL 154 (178)
Q Consensus 79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---~~l~~L 154 (178)
+|++|++++|.+..++. .+..+++|+.|++++|++.... +..+..+++|++|++++|.++..+. ..+ ..+++|
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L 165 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKL 165 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTTC
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcC
Confidence 99999999998777755 6889999999999999986553 3447889999999999999999863 233 578999
Q ss_pred cEEEecCCCCCCCCCcccccc
Q 048040 155 KTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 155 ~~l~l~~n~~~~~~~~~~~~l 175 (178)
+.|++++|++.+..+..+..+
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHS
T ss_pred CEEECCCCCCCccCHHHhhhc
Confidence 999999999998776655544
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.6e-17 Score=130.74 Aligned_cols=164 Identities=21% Similarity=0.254 Sum_probs=129.1
Q ss_pred CcCCCceeeee--eeecCCC--------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh
Q 048040 3 DEKRDCCKWRG--VHCRNTT--------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE 72 (178)
Q Consensus 3 ~~~~~~c~~~~--~~~~~~~--------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 72 (178)
|+....|.+.+ +.|.... .++++|++++| .+.+..|..+..+++|++|++++|.+...-.+.
T Consensus 2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~ 73 (455)
T 3v47_A 2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLN--------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN 73 (455)
T ss_dssp -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSS--------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTT
T ss_pred CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCC--------ccCcCChhHhccCccccEEECcCCcccceECcc
Confidence 34556777776 6776432 56899999999 778777888999999999999999997531356
Q ss_pred hhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCC-chHHHhccCCCCEEeccCCCCCCcccHHHHHhc
Q 048040 73 FIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAK 150 (178)
Q Consensus 73 ~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 150 (178)
.+..+++|++|++++|.+... |..+..+++|++|++++|++.+.. ....++.+++|++|++++|.+++... ...+.+
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~ 152 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLN 152 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGG
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCC
Confidence 789999999999999966655 678999999999999999985421 11227788999999999999988732 224789
Q ss_pred cCCCcEEEecCCCCCCCCCcccccc
Q 048040 151 LRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 151 l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+++|++|++++|.+.+..|..+..+
T Consensus 153 l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred CCcccEEeCCCCcccccChhhhhcc
Confidence 9999999999999999888877654
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=3.1e-17 Score=121.39 Aligned_cols=141 Identities=23% Similarity=0.288 Sum_probs=120.1
Q ss_pred CCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-h
Q 048040 18 NTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-T 96 (178)
Q Consensus 18 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~ 96 (178)
.....++.|++++| .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .
T Consensus 82 ~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 152 (272)
T 3rfs_A 82 KELTNLTYLILTGN--------QLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGV 152 (272)
T ss_dssp TTCTTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCCCCEEECCCC--------ccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHH
Confidence 34578999999999 77777777789999999999999999985 56678999999999999997777755 5
Q ss_pred ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCc
Q 048040 97 LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170 (178)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 170 (178)
+..+++|+.|++++|++.+.+ ...++.+++|++|++++|.+++.+. ..+..+++|+.|++++|++.+.+|.
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCH--HHHhCCcCCCEEEccCCCccccCcH
Confidence 689999999999999986554 3446889999999999999998863 4678999999999999999877663
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.5e-17 Score=124.25 Aligned_cols=134 Identities=23% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCC--------------------chhhhcccCCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP--------------------IPEFIGSLSKL 80 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--------------------~~~~l~~l~~L 80 (178)
..++.|++++| .+.+..+..+..+++|+.|++++|.++..+ +|..+..+++|
T Consensus 31 ~~l~~L~L~~N--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSEN--------LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTS--------CCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTC
T ss_pred CCCCEEEcCCC--------cCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCC
Confidence 56788888888 455444555555555555555555555410 33344444455
Q ss_pred cEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040 81 RYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159 (178)
Q Consensus 81 ~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l 159 (178)
++|++++|.+..+| ..+..+++|+.|++++|++...+ ...+..+++|++|++++|.++..+. ..+..+++|++|++
T Consensus 103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPA--GLLNGLENLDTLLL 179 (290)
T ss_dssp CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCT--TTTTTCTTCCEEEC
T ss_pred CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCH--HHhcCcCCCCEEEC
Confidence 55555555444443 23445555555555555543332 1223445555555555555555431 23445555555555
Q ss_pred cCCCCC
Q 048040 160 RSCALP 165 (178)
Q Consensus 160 ~~n~~~ 165 (178)
++|++.
T Consensus 180 ~~N~l~ 185 (290)
T 1p9a_G 180 QENSLY 185 (290)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 555555
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=4.1e-18 Score=127.87 Aligned_cols=158 Identities=21% Similarity=0.305 Sum_probs=88.0
Q ss_pred ceeeeeeeecCCC---------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCC-chhhhccc
Q 048040 8 CCKWRGVHCRNTT---------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP-IPEFIGSL 77 (178)
Q Consensus 8 ~c~~~~~~~~~~~---------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~l 77 (178)
.|.|.++.|.... ..++.|++++|. +....+..+..+++|+.|++++|.++... .+..+..+
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~--------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNK--------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC--------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCc--------cCccCHhHhhccccCCEEECCCCccCcccCcccccccc
Confidence 4789999997532 578999999994 44322233455555666666555554310 13334444
Q ss_pred CCCcEEeccCCCCCccchh-------------------------ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040 78 SKLRYLNLSCGAPLEVPRT-------------------------LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD 132 (178)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~-------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (178)
++|++|++++|.+..+|.. +..+++|+.|++++|.+.... +..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEE
Confidence 5555555554443334433 444555555555555543222 22245556666666
Q ss_pred ccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 133 LSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 133 l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+++|.+++.. .+..+..+++|++|++++|.+.+..|..+..+
T Consensus 157 l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 157 MAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp CTTCEEGGGE-ECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCcccccc-chhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 6666665410 02255667777777777777776666666544
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=3.5e-17 Score=119.70 Aligned_cols=135 Identities=22% Similarity=0.251 Sum_probs=118.1
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 99 (178)
..++.|++++| .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+..
T Consensus 59 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 129 (251)
T 3m19_A 59 TKLTWLNLDYN--------QLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129 (251)
T ss_dssp TTCCEEECTTS--------CCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCEEECCCC--------cCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhcc
Confidence 67999999999 78877777889999999999999999986 56778999999999999998777765 4688
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
+++|+.|++++|++...+. ..++.+++|++|++++|.++..+ +..+..+++|+.|++++|++...
T Consensus 130 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 130 LTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999999999866543 34788999999999999999886 34678899999999999999875
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.9e-17 Score=121.61 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~ 99 (178)
..++.|++++|. +.+..+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+..++ ..+..
T Consensus 28 ~~l~~L~ls~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNP--------LRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTCC--------CCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred CCccEEECCCCc--------ccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 458899999984 4443334455555555555555555543 3334555555555555555444332 34455
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFI 172 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 172 (178)
+++|+.|++++|++..... ..++.+++|++|++++|.++... ++..+..+++|++|++++|++.+..+..+
T Consensus 99 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp CTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccceec-CchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 5555555555555433321 11444555555555555554421 01244455555555555555554444433
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=2.8e-17 Score=122.21 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=102.4
Q ss_pred CCeeEEEecCCccc----------------cccccc-ccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEE
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKF-LKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYL 83 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 83 (178)
..++.|++++|.+. .+++|. +....+..+..+++|++|++++|.++.. .+..+..+++|++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEE
Confidence 45666666666552 233344 5544466777788888888888888775 56677778888888
Q ss_pred eccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040 84 NLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162 (178)
Q Consensus 84 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n 162 (178)
++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|++|++++|.+++.. +..+..+++|+.|++++|
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVH--PHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccC--HhHccCcccccEeeCCCC
Confidence 888886666654 46777888888888887754432 23566777888888888777663 236667777777777777
Q ss_pred CCCCCCCcccccc
Q 048040 163 ALPPINPSFICGW 175 (178)
Q Consensus 163 ~~~~~~~~~~~~l 175 (178)
.+.+..+..+..+
T Consensus 212 ~l~~~~~~~~~~l 224 (285)
T 1ozn_A 212 NLSALPTEALAPL 224 (285)
T ss_dssp CCSCCCHHHHTTC
T ss_pred cCCcCCHHHcccC
Confidence 7776665545443
No 28
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=1.1e-17 Score=113.10 Aligned_cols=130 Identities=25% Similarity=0.247 Sum_probs=107.3
Q ss_pred CCeeEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhcc
Q 048040 21 GHVKVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTLR 98 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~ 98 (178)
..++.|++++| .+. +.+|..+..+++|+.|++++|.++. . ..+..+++|++|++++|.+.. +|..+.
T Consensus 17 ~~l~~L~l~~n--------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 85 (149)
T 2je0_A 17 SDVKELVLDNS--------RSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE 85 (149)
T ss_dssp GGCSEEECTTC--------BCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred ccCeEEEccCC--------cCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence 67899999999 676 6778778889999999999999987 4 678889999999999997666 677777
Q ss_pred CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEecC
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVLRS 161 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~ 161 (178)
.+++|+.|++++|++.+.+.+..++.+++|++|++++|.+++.+.+ ...+..+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7999999999999986654445688899999999999999887632 24688899999998763
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=2.3e-17 Score=134.17 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=103.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~ 99 (178)
..++.|++++| .+.+..+..|.++++|++|++++|.++.. .|..|..+++|++|++++|.+..+ |..+..
T Consensus 32 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFN--------PLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCCC--------CcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 67899999999 66666666777788888888888877764 466777788888888877755555 667777
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+++|++|++++|.+...+. ..++.+++|++|++++|.+++.. ++..++++++|++|++++|.+.+..|..++.+
T Consensus 103 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp CTTCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred cccCCEEEccCCccccccc-cccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 7888888888887755442 22677777888888888776521 02367777788888888887777666655543
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=127.81 Aligned_cols=158 Identities=24% Similarity=0.262 Sum_probs=83.8
Q ss_pred eeeeeecCC---------CCCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCC
Q 048040 11 WRGVHCRNT---------TGHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDF 65 (178)
Q Consensus 11 ~~~~~~~~~---------~~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 65 (178)
+..+.|... ...++.|++++|.+. .+++|.+.+..+..|.++.+|+.|++++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 446666542 255788888888663 3344555555555666667777777777766
Q ss_pred CCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH
Q 048040 66 GGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW 144 (178)
Q Consensus 66 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 144 (178)
+.. .+..+..+++|++|++++|.+..++. .+..+++|+.|++++|+.........+..+++|++|++++|.++..+
T Consensus 125 ~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 125 TTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp SSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred Cee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 653 34456666666666666665544433 34444555555554433211111122444555555555555555444
Q ss_pred HHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040 145 FQVVAKLRSLKTFVLRSCALPPINPSFIC 173 (178)
Q Consensus 145 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 173 (178)
.+..+++|+.|++++|.+++..|..|.
T Consensus 202 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 228 (440)
T 3zyj_A 202 --NLTPLIKLDELDLSGNHLSAIRPGSFQ 228 (440)
T ss_dssp --CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred --ccCCCcccCEEECCCCccCccChhhhc
Confidence 234444445555555444444444433
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.8e-17 Score=125.09 Aligned_cols=130 Identities=21% Similarity=0.303 Sum_probs=63.8
Q ss_pred cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC-CCcEEeccCCCCC-ccchhccCCCCCcEEEeeCCccccCC
Q 048040 40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS-KLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVG 117 (178)
Q Consensus 40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 117 (178)
.+.+.+|..+..+++|++|++++|.+++. .|..+..++ .|++|++++|.+. ..|..+..+. |+.|++++|++.+.
T Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~- 212 (313)
T 1ogq_A 136 ALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD- 212 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC-
T ss_pred ccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc-
Confidence 44444444455555555555555555432 444444444 4455555444222 2333333333 44444444444322
Q ss_pred chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 118 SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 118 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
.+..+..+++|++|++++|.+++... .+..+++|++|++++|.+++.+|..+..+
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 267 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGG---GCCCCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CCHHHhcCCCCCEEECCCCceeeecC---cccccCCCCEEECcCCcccCcCChHHhcC
Confidence 22334555566666666666654432 24555666666666666666666655544
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=2.9e-17 Score=129.60 Aligned_cols=148 Identities=22% Similarity=0.212 Sum_probs=73.6
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .+++|.+.+..+..|.++.+|+.|++++|.++.. .+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEE
Confidence 56889999998653 3344445444445555566666666666665553 333455555566665
Q ss_pred ccCCCCCccch-hccCCCCCcEEEeeC-------------------------CccccCCchHHHhccCCCCEEeccCCCC
Q 048040 85 LSCGAPLEVPR-TLRNFSGLEYLNLEN-------------------------SHLFSVGSLEWLSHLSSLRHLDLSYINL 138 (178)
Q Consensus 85 l~~~~~~~~~~-~~~~l~~L~~L~l~~-------------------------n~l~~~~~~~~~~~l~~L~~L~l~~n~i 138 (178)
+++|.+..++. .+..+++|+.|++++ |++...+ .+..+++|++|++++|.+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECcCCcC
Confidence 55554443332 233333333333333 3332221 123334444444444444
Q ss_pred CCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 139 TKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 139 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
++.+ +..+.++++|+.|++++|.+.+..|..|..
T Consensus 231 ~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 264 (452)
T 3zyi_A 231 PEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264 (452)
T ss_dssp SEEC--GGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccC--cccccCccCCCEEEeCCCcCceECHHHhcC
Confidence 4442 224455555555555555555555544443
No 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.1e-16 Score=114.19 Aligned_cols=138 Identities=18% Similarity=0.207 Sum_probs=114.7
Q ss_pred eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCC
Q 048040 23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFS 101 (178)
Q Consensus 23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~ 101 (178)
.+.++++++ .+. .+|..+ ..+|+.|++++|.++.. .+..+..+++|++|++++|.+..+|. .+..++
T Consensus 21 ~~~v~c~~~--------~l~-~ip~~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 88 (229)
T 3e6j_A 21 GTTVDCRSK--------RHA-SVPAGI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88 (229)
T ss_dssp TTEEECTTS--------CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEeEccCC--------CcC-ccCCCC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence 467999888 443 334322 37899999999999996 68889999999999999998888865 578999
Q ss_pred CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~ 176 (178)
+|+.|++++|++...+ ...+..+++|++|++++|.++..+. .+..+++|++|++++|++.+..+..+..++
T Consensus 89 ~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLP-SAVFDRLVHLKELFMCCNKLTELPR---GIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCSCCT---TGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CcCEEECCCCcCCccC-hhHhCcchhhCeEeccCCcccccCc---ccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 9999999999986654 3446889999999999999998864 678999999999999999988777776553
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=6.6e-17 Score=119.68 Aligned_cols=113 Identities=23% Similarity=0.233 Sum_probs=78.7
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLR 98 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 98 (178)
...++.|++++| .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+.
T Consensus 51 l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 121 (276)
T 2z62_A 51 FPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIG 121 (276)
T ss_dssp CTTCSEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred ccCCcEEECCCC--------cCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcc
Confidence 367889999998 55555555667777777777777777764 45667777777777777775555543 566
Q ss_pred CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 141 (178)
.+++|+.|++++|++.....+..++.+++|++|++++|.+++.
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 7777777777777765544445567777777777777777665
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=6.3e-17 Score=121.39 Aligned_cols=152 Identities=20% Similarity=0.207 Sum_probs=115.6
Q ss_pred CCeeEEEecCCccc---------------ccccccccccch-hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE---------------FARRKFLKGTIS-PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~---------------~~~~~~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .++.|.+.+..+ ..+..+++|+.|++++|.+... .+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEE
Confidence 45666666666553 223345655444 4678888999999999988875 677788889999999
Q ss_pred ccCCCCCc--cchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040 85 LSCGAPLE--VPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162 (178)
Q Consensus 85 l~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n 162 (178)
+++|.+.. .|..+..+++|+.|++++|++.+.. +..+..+++|++|++++|.+++.+. ..+..+++|++|++++|
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCS--GGGTTCTTCCEEECTTS
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCccCh--hhccCcccCCEeECCCC
Confidence 99885543 5778888899999999999875543 3447788899999999999988753 35678899999999999
Q ss_pred CCCCCCCccccccc
Q 048040 163 ALPPINPSFICGWE 176 (178)
Q Consensus 163 ~~~~~~~~~~~~l~ 176 (178)
++.+..|..+..++
T Consensus 234 ~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 234 HIMTSKKQELQHFP 247 (306)
T ss_dssp CCCBCSSSSCCCCC
T ss_pred CCcccCHHHHHhhh
Confidence 99988888777653
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.1e-16 Score=115.09 Aligned_cols=138 Identities=20% Similarity=0.241 Sum_probs=114.3
Q ss_pred eEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCCC
Q 048040 24 KVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSG 102 (178)
Q Consensus 24 ~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~ 102 (178)
..++++++ .+. .+|..+. .+++.|++++|.++.. .+..+..+++|++|++++|.+..+ |..+..+++
T Consensus 14 ~~v~c~~~--------~l~-~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 81 (220)
T 2v9t_B 14 NIVDCRGK--------GLT-EIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81 (220)
T ss_dssp TEEECTTS--------CCS-SCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS
T ss_pred CEEEcCCC--------CcC-cCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC
Confidence 56888888 444 3444332 6899999999999985 556889999999999999977766 678999999
Q ss_pred CcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040 103 LEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~ 176 (178)
|+.|++++|++...+. ..+..+++|++|++++|.++..+ +..+..+++|++|++++|.+++..+..+..++
T Consensus 82 L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 82 LNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152 (220)
T ss_dssp CCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeC--HHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence 9999999999876542 34688999999999999999885 34788999999999999999998888777653
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=127.22 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=123.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++| .+.+..|..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+..+|.. .+
T Consensus 21 ~~L~~L~Ls~n--------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 89 (520)
T 2z7x_B 21 QKTTILNISQN--------YISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKISCH--PT 89 (520)
T ss_dssp TTCSEEECCSS--------CCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEEECC--CC
T ss_pred ccccEEECCCC--------cccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeecCcc--cc
Confidence 68999999999 78888888999999999999999999985 688999999999999999988888776 89
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC--cEEEecCCCC--CCCCCccccccc
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL--KTFVLRSCAL--PPINPSFICGWE 176 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L--~~l~l~~n~~--~~~~~~~~~~l~ 176 (178)
++|++|++++|++.+...+..++.+++|++|++++|.+++. .+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-----hccccccceeeEEEeecccccccccccccccccc
Confidence 99999999999997766666799999999999999999773 45677888 9999999999 778888777643
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.69 E-value=8.9e-17 Score=134.35 Aligned_cols=132 Identities=27% Similarity=0.358 Sum_probs=76.7
Q ss_pred ccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCC-ccchhccCCCCCcEEEeeCCccccCC
Q 048040 39 KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL-EVPRTLRNFSGLEYLNLENSHLFSVG 117 (178)
Q Consensus 39 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 117 (178)
|.+.+.+|..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++.+.
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~- 505 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE- 505 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-
Confidence 355555555666666666666666666554 5556666666666666666332 4455566666666666666665322
Q ss_pred chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 118 SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 118 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
.+..++.+++|++|++++|.+++.. +..+..+++|+.|++++|++.+.+|..+..
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 2344566666666666666665442 235566666666666666666666655443
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=124.65 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=94.4
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .++.|.+.+..|..|.++.+|+.|++++|.++.. .+..+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEE
Confidence 56889999998653 2334455555555666666666666666666653 333455666666666
Q ss_pred ccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCC
Q 048040 85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163 (178)
Q Consensus 85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~ 163 (178)
+++|.+..+ +..+..+++|+.|++++|.+.... +..+..+++|++|++++|.++..+ ...+..+++|+.|++++|.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS-HRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC-TTSSTTCTTCCEEEEESCCCSSCC--HHHHTTCTTCCEEEEESCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeC-hhhccCCCCCCEEECCCCcCcccC--hhHhcccCCCcEEeCCCCc
Confidence 666644433 345566666666666666654332 223566677777777777777665 3466777777777777777
Q ss_pred CCCCCCcccccc
Q 048040 164 LPPINPSFICGW 175 (178)
Q Consensus 164 ~~~~~~~~~~~l 175 (178)
+.+..+..+..+
T Consensus 188 i~~~~~~~~~~l 199 (477)
T 2id5_A 188 INAIRDYSFKRL 199 (477)
T ss_dssp CCEECTTCSCSC
T ss_pred CcEeChhhcccC
Confidence 776665555443
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=1.1e-15 Score=115.71 Aligned_cols=147 Identities=20% Similarity=0.247 Sum_probs=100.7
Q ss_pred ceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040 8 CCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS 78 (178)
Q Consensus 8 ~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 78 (178)
.|.+..+.|... ...++.|++++| .+.+..+..+..+++|++|++++|.++.. .|..+..++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN--------KITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS--------CCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCC--------cCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCC
Confidence 467777777632 256888999998 67766666788888899999999988875 577888888
Q ss_pred CCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEE
Q 048040 79 KLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFV 158 (178)
Q Consensus 79 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~ 158 (178)
+|++|++++|.+..+|..+. ++|+.|++++|++.... ...+..+++|++|++++|.+......+..+.++++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhc--ccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 89999888887766665443 56777777777764433 3345666677777777776653211123455666666666
Q ss_pred ecCCCCCC
Q 048040 159 LRSCALPP 166 (178)
Q Consensus 159 l~~n~~~~ 166 (178)
+++|.+..
T Consensus 178 l~~n~l~~ 185 (330)
T 1xku_A 178 IADTNITT 185 (330)
T ss_dssp CCSSCCCS
T ss_pred CCCCcccc
Confidence 66665553
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=1.3e-16 Score=125.51 Aligned_cols=138 Identities=25% Similarity=0.293 Sum_probs=117.5
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~ 99 (178)
..++.|++++| .+.+..|..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+..+ |..+..
T Consensus 275 ~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 275 SGVKTCDLSKS--------KIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp SCCCEEECCSS--------CCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred cCceEEEecCc--------cccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 35666666666 78888888899999999999999999985 677899999999999999977666 567889
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 170 (178)
+++|+.|++++|++.+.. +..+..+++|++|++++|.+++.+. ..+..+++|++|++++|++.+.+|.
T Consensus 346 l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCEEECCCCcccccC-hhhccccccccEEECCCCccccCCH--hHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999985553 3457889999999999999998863 4678899999999999999998874
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.69 E-value=2.5e-16 Score=128.08 Aligned_cols=149 Identities=16% Similarity=0.077 Sum_probs=87.4
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .+++|.+.+..|..|.++.+|++|++++|.++.. .|..+..+++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-ChhhhcccccccEee
Confidence 56899999999553 3334444444455555555666666666655553 455555566666666
Q ss_pred ccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCc--EEEecC
Q 048040 85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLK--TFVLRS 161 (178)
Q Consensus 85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~--~l~l~~ 161 (178)
+++|.+..+ +..+..+++|++|++++|++.+...+. +..+++|++|++++|.+++.+ +..++.+++|+ .+++++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLS--KEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEEC--HHHHHTTTTCCSEEEECTT
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccC--hhhhhhhcccceeEEecCC
Confidence 666544444 345556666666666666654433222 223666666666666666553 34566666666 667777
Q ss_pred CCCCCCCCcccc
Q 048040 162 CALPPINPSFIC 173 (178)
Q Consensus 162 n~~~~~~~~~~~ 173 (178)
|.+.+..|..+.
T Consensus 189 n~l~~~~~~~~~ 200 (606)
T 3t6q_A 189 NDIAGIEPGAFD 200 (606)
T ss_dssp CCCCEECTTTTT
T ss_pred CccCccChhHhh
Confidence 777666665544
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=119.67 Aligned_cols=138 Identities=21% Similarity=0.287 Sum_probs=82.9
Q ss_pred CCeeEEEecCCcccccccccccccchhhh--hCCCCCCEEEccCCCCCCCCchhhhccc-----CCCcEEeccCCCCCcc
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPAL--LKLHDLRHLDLSNNDFGGSPIPEFIGSL-----SKLRYLNLSCGAPLEV 93 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~ 93 (178)
..+++|++++| .+.+.+|..+ ..+++|++|++++|.+++ .|..+..+ ++|++|++++|.+..+
T Consensus 95 ~~L~~L~L~~n--------~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 95 SGLQELTLENL--------EVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp SCCCEEEEEEE--------BCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred CCccEEEccCC--------cccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 45666666666 6666666654 667777777777777766 34555555 6677777777655554
Q ss_pred c-hhccCCCCCcEEEeeCCccccC-CchHHH--hccCCCCEEeccCCCCCCcccHH-HHHhccCCCcEEEecCCCCCCCC
Q 048040 94 P-RTLRNFSGLEYLNLENSHLFSV-GSLEWL--SHLSSLRHLDLSYINLTKSRDWF-QVVAKLRSLKTFVLRSCALPPIN 168 (178)
Q Consensus 94 ~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~ 168 (178)
+ ..+..+++|+.|++++|++.+. +.+..+ +.+++|++|++++|.++..+..+ ..+..+++|++|++++|.+.+.+
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 3 4666677777777777764321 111222 55666777777777666543222 23345566666777666666654
No 44
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.1e-15 Score=107.82 Aligned_cols=129 Identities=18% Similarity=0.225 Sum_probs=91.0
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~ 99 (178)
..++.|++++| .+. .+| .+..+++|+.|++++|.++. +..+..+++|++|++++|.+.. .+..+..
T Consensus 44 ~~L~~L~l~~n--------~i~-~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 44 NSLTYITLANI--------NVT-DLT-GIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HTCCEEEEESS--------CCS-CCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred CCccEEeccCC--------Ccc-ChH-HHhcCCCCCEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 46788888888 444 334 46777788888888886654 2366777888888888775553 4566777
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
+++|+.|++++|++.+. .+..++.+++|++|++++|. ++..+ .+..+++|++|++++|.+.+.
T Consensus 111 l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCCC
T ss_pred CCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcCh
Confidence 78888888888876442 23557777888888888887 66654 467777888888888877753
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=8.3e-17 Score=135.75 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=88.5
Q ss_pred eeeeeeecCCCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCc-hhhhcccCCCcEEeccCC
Q 048040 10 KWRGVHCRNTTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPI-PEFIGSLSKLRYLNLSCG 88 (178)
Q Consensus 10 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~~ 88 (178)
.|..|.+ ....+++|++++| .+.+..+..+..+.+|++|++++|..... + |..|..+++|++|++++|
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N--------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFN--------YIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESC--------CCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTC
T ss_pred CCCCCCC--CCCCcCEEECCCC--------cCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCC
Confidence 4555555 4578999999999 55555555566666666666666644332 3 455666666666666666
Q ss_pred CCCcc-chhccCCCCCcEEEeeCCccccCC-chHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 89 APLEV-PRTLRNFSGLEYLNLENSHLFSVG-SLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 89 ~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
.+..+ |..+..+++|++|++++|.+.+.. ....++.+++|++|++++|.+++... ...++++++|++|++++|.+.+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCe
Confidence 44433 455666666666666666653321 11124556666666666666655421 1245566666666666666665
Q ss_pred CCCccccc
Q 048040 167 INPSFICG 174 (178)
Q Consensus 167 ~~~~~~~~ 174 (178)
..+..+..
T Consensus 163 ~~~~~l~~ 170 (844)
T 3j0a_A 163 VCEHELEP 170 (844)
T ss_dssp CCSGGGHH
T ss_pred eCHHHccc
Confidence 55555443
No 46
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=112.92 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=114.3
Q ss_pred eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCC
Q 048040 23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFS 101 (178)
Q Consensus 23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~ 101 (178)
.+.++++++ .+.. +|..+ ...++.|++++|.++....+..+..+++|++|++++|.+..++. .+..++
T Consensus 13 ~~~l~~s~n--------~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 13 GTTVDCSNQ--------KLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81 (220)
T ss_dssp TTEEECCSS--------CCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCEeEeCCC--------Cccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence 358999999 5543 44433 34578999999999984123458899999999999998777755 789999
Q ss_pred CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~ 176 (178)
+|+.|++++|++.+.. +..+..+++|++|++++|.+++.+ +..+..+++|++|++++|.+++..|..|..++
T Consensus 82 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 82 GVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp TCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSCCCCBC--TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred CCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCcCCeEC--HhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 9999999999986654 345788999999999999999884 24788999999999999999998898887654
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=4e-16 Score=128.52 Aligned_cols=151 Identities=20% Similarity=0.185 Sum_probs=89.0
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..+++|++++|.+. .++.|.+.+..|..+..+++|++|++++|.++.. .+..|..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEE
Confidence 57899999998553 2233445555555566666666666666666553 233456666666666
Q ss_pred ccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHh--ccCCCcEEEecC
Q 048040 85 LSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVA--KLRSLKTFVLRS 161 (178)
Q Consensus 85 l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~--~l~~L~~l~l~~ 161 (178)
+++|.+..++ ..+..+++|++|++++|.+.+.. +..++.+++|++|++++|.+++.+. ..++ .+++|++|++++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKS--EELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCH--HHHGGGTTCEESEEECTT
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCH--HHhhccccccccEEECCC
Confidence 6666444443 35566666666666666654332 2224556666666666666666542 2332 346677777777
Q ss_pred CCCCCCCCcccccc
Q 048040 162 CALPPINPSFICGW 175 (178)
Q Consensus 162 n~~~~~~~~~~~~l 175 (178)
|.+.+..|..+..+
T Consensus 181 n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 181 NQIKEFSPGCFHAI 194 (680)
T ss_dssp CCCCCBCTTGGGGS
T ss_pred CcccccChhhhhhh
Confidence 77776666655443
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=3.8e-16 Score=126.22 Aligned_cols=140 Identities=18% Similarity=0.138 Sum_probs=113.5
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++| .+.+..+..+..+++|++|++++|.++.. .|..|..+++|++|++++|.+..+|.. .+
T Consensus 52 ~~L~~L~Ls~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 52 PRTKALSLSQN--------SISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp TTCCEEECCSS--------CCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCcCEEECCCC--------CccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence 45666666666 77777778889999999999999999885 577889999999999999987778766 78
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC--cEEEecCCCC--CCCCCccccccc
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL--KTFVLRSCAL--PPINPSFICGWE 176 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L--~~l~l~~n~~--~~~~~~~~~~l~ 176 (178)
++|++|++++|++...+.+..++.+++|++|++++|.++.. .+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCcccccccC
Confidence 99999999999987766556688999999999999998764 23455555 9999999988 777887776643
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=3.6e-16 Score=123.36 Aligned_cols=151 Identities=25% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhh-----------
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEF----------- 73 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~----------- 73 (178)
..++.|++++|.+. .+++|.+.+..+..+..+++|+.|++++|.++.. .+..
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLD 177 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEe
Confidence 45666777766653 3345566655555677788888888888877653 2223
Q ss_pred --------------hcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCC
Q 048040 74 --------------IGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139 (178)
Q Consensus 74 --------------l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~ 139 (178)
+..+++|++|++++|.+..+| .+..+++|+.|++++|++.+.. +..+..+++|+.|++++|.++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCcCc
Confidence 445566666666666555554 4667889999999999986654 455889999999999999998
Q ss_pred CcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040 140 KSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 140 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~ 176 (178)
..+ +..+.++++|+.|++++|++++..+..+..++
T Consensus 256 ~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 256 LIE--RNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp EEC--TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred eEC--HHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 885 34788999999999999999988887776553
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.9e-16 Score=112.59 Aligned_cols=139 Identities=18% Similarity=0.128 Sum_probs=116.7
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLR 98 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 98 (178)
...++.|++++| .+.+..+..+..+.+|++|++++|.++.. .+..+..+++|++|++++|.+..++. .+.
T Consensus 51 l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 121 (208)
T 2o6s_A 51 LTSLTQLYLGGN--------KLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFD 121 (208)
T ss_dssp CTTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCcEEECCCC--------ccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhc
Confidence 367999999999 67766566778999999999999999985 55667899999999999997777765 578
Q ss_pred CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccccc
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWEI 177 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~ 177 (178)
.+++|+.|++++|++.+.+. ..+..+++|++|++++|.+.. .++.|+.|+++.|.+++.+|+.++.++-
T Consensus 122 ~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~---------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCC---------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeec---------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 89999999999999865543 447889999999999998764 3567888899999999999998887763
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=127.86 Aligned_cols=142 Identities=21% Similarity=0.188 Sum_probs=83.2
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~ 99 (178)
..++.|++++| .+.+..+..|.++++|++|++++|.++.. .+..|..+++|++|++++|.+..++ ..+..
T Consensus 28 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFN--------PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SSCCEEECCSC--------CCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccEEEccCC--------ccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 56889999999 45544455566666666666666666653 3455666666666666666544443 35566
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC 173 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 173 (178)
+++|++|++++|++...+.. .++.+++|++|++++|.++.... +..++++++|++|++++|.+.+..|..++
T Consensus 99 l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~l-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCCCC-CGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred ccccccccccccccccCCCc-cccccccccEEecCCCccceecC-hhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 66666666666665443321 15556666666666666554210 12455666666666666666555444443
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=123.19 Aligned_cols=152 Identities=20% Similarity=0.180 Sum_probs=88.7
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .+++|.+.+..+..+..+++|+.|++++|.++.. .+..+..+++|++|+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLD 166 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeC
Confidence 45666666666553 3344566655555778888888888888888764 344566666666666
Q ss_pred ccCC-CCCccch-hccCCCCCcEEEeeCCccccCCc---------------------hHHHhccCCCCEEeccCCCCCCc
Q 048040 85 LSCG-APLEVPR-TLRNFSGLEYLNLENSHLFSVGS---------------------LEWLSHLSSLRHLDLSYINLTKS 141 (178)
Q Consensus 85 l~~~-~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~~l~~L~~L~l~~n~i~~~ 141 (178)
+++| .+..++. .+..+++|+.|++++|++...+. +..+..+++|+.|++++|.++..
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence 6664 4444433 45555555555555555433321 12244455555555555555544
Q ss_pred ccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 142 RDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 142 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+ +..+.++++|+.|++++|++++..+..+..+
T Consensus 247 ~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 247 E--RNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--TTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred C--hhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 2345566666777777777666655555443
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=8e-16 Score=114.94 Aligned_cols=124 Identities=22% Similarity=0.120 Sum_probs=105.0
Q ss_pred cccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccC
Q 048040 38 RKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSV 116 (178)
Q Consensus 38 ~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 116 (178)
+|.+. .+|..+..+++|++|++++|.++.. .+..|..+++|++|++++|.+..+|. .+..+++|+.|++++|++...
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 33665 5677788999999999999999985 56789999999999999998777765 568899999999999998765
Q ss_pred CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 117 GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 117 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
+. ..+..+++|++|++++|.++..+. .+..+..|+.+++++|++...
T Consensus 164 ~~-~~~~~l~~L~~L~L~~N~l~~ip~---~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 164 PA-GLLNGLENLDTLLLQENSLYTIPK---GFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CT-TTTTTCTTCCEEECCSSCCCCCCT---TTTTTCCCSEEECCSCCBCCS
T ss_pred CH-HHhcCcCCCCEEECCCCcCCccCh---hhcccccCCeEEeCCCCccCc
Confidence 53 446789999999999999998875 667788999999999998753
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=2.2e-16 Score=128.36 Aligned_cols=146 Identities=19% Similarity=0.197 Sum_probs=121.1
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLR 98 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~ 98 (178)
...+++|++++| .+.+..|..|.++++|++|++++|.++.. .|..+..+++|++|++++|.+..++ ..+.
T Consensus 55 l~~L~~L~Ls~n--------~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 55 FSELQWLDLSRC--------EIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp CTTCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred CccCcEEeCCCC--------cccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccC
Confidence 367999999999 77877788899999999999999999986 6889999999999999999777665 5789
Q ss_pred CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc-cHHHHHhccCC-CcEEEecCCCCCCCCCccccc
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR-DWFQVVAKLRS-LKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~l~~-L~~l~l~~n~~~~~~~~~~~~ 174 (178)
.+++|++|++++|.+.+...+..++.+++|++|++++|.+++.+ .....+.+++. +.++++++|.+.+..+..+..
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC
Confidence 99999999999999876555677999999999999999998874 21233344433 558999999999777766553
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=6.6e-16 Score=117.16 Aligned_cols=94 Identities=24% Similarity=0.355 Sum_probs=54.9
Q ss_pred eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040 9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK 79 (178)
Q Consensus 9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 79 (178)
|.+..+.|... ...++.|++++| .+.+..+..+..+++|+.|++++|.++.. .|..+..+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN--------DISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCC--------cCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCC
Confidence 67777777532 246888999988 44444444556666666666666666653 4555666666
Q ss_pred CcEEeccCCCCCccchhccCCCCCcEEEeeCCcc
Q 048040 80 LRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHL 113 (178)
Q Consensus 80 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l 113 (178)
|++|++++|.+..+|..+. ++|++|++++|++
T Consensus 104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i 135 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRI 135 (332)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccCcccc--ccCCEEECCCCcc
Confidence 6666666665444443322 3444444444444
No 56
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=5.5e-17 Score=134.89 Aligned_cols=123 Identities=20% Similarity=0.113 Sum_probs=99.1
Q ss_pred chhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhc
Q 048040 45 ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSH 124 (178)
Q Consensus 45 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 124 (178)
.+..+..+..|+.|+|++|.+.. +|..+..+++|++|+|++|.+..+|..+..+++|+.|++++|++... +..++.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--p~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL--PAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSC--CSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCcc--ChhhcC
Confidence 45678888999999999999986 67777789999999999997778888888999999999999998644 455788
Q ss_pred cCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 125 LSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 125 l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
+++|++|++++|.|+..|. .++.+++|++|++++|++.+.+|..+..
T Consensus 292 l~~L~~L~L~~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPW---EFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GTTCSEEECCSSCCCCCCS---STTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCccCh---hhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 8999999999999987764 5888999999999999998877776644
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=4.3e-16 Score=113.01 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=82.7
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC-CCCCCchhhhcccCCCcEEeccC-CCCCccc-hh
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND-FGGSPIPEFIGSLSKLRYLNLSC-GAPLEVP-RT 96 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~ 96 (178)
...++.|++++| .+.+..+..+..+++|+.|++++|. ++.. .+..+..+++|++|++++ |.+..++ ..
T Consensus 30 ~~~l~~L~l~~n--------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 30 PPSTQTLKLIET--------HLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CTTCCEEEEESC--------CCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CCcccEEEEeCC--------cceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 357899999999 5555445566677777777777775 6653 344667777777777776 6665554 35
Q ss_pred ccCCCCCcEEEeeCCccccCCchHHHhccCCCC---EEeccCC-CCCCcccHHHHHhccCCCc-EEEecCCCCCC
Q 048040 97 LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR---HLDLSYI-NLTKSRDWFQVVAKLRSLK-TFVLRSCALPP 166 (178)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~---~L~l~~n-~i~~~~~~~~~~~~l~~L~-~l~l~~n~~~~ 166 (178)
+..+++|+.|++++|++.+.+. +..+++|+ +|++++| .++..+. ..+.++++|+ +|++++|.+..
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~--~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECT--TTTTTTBSSEEEEECCSCCCCE
T ss_pred hCCCCCCCEEeCCCCCCccccc---cccccccccccEEECCCCcchhhcCc--ccccchhcceeEEEcCCCCCcc
Confidence 6667777777777776654432 44445554 6666666 5555431 2345555555 55555555553
No 58
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=4.9e-16 Score=120.26 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=92.0
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~ 99 (178)
..++.++++++ .+....+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..++ ..+..
T Consensus 45 ~~l~~l~l~~~--------~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 45 NNQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp CCCSEEEEESC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCceEEEecCC--------chhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 55677888777 55544344566777777777777777764 4456777777777777777555553 35677
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSF 171 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 171 (178)
+++|+.|++++|++...+. ..++.+++|++|++++|.++..+ +..+..+++|++|++++|.+++.....
T Consensus 116 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~ 184 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDLSL 184 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBCCGGG
T ss_pred CCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCcccccc
Confidence 7777777777777654432 22466777777777777776664 235667777777777777776554333
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=121.24 Aligned_cols=142 Identities=19% Similarity=0.187 Sum_probs=106.9
Q ss_pred CCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCC-CchhhhcccCCCcEEeccCCCCCc-cch-
Q 048040 19 TTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGS-PIPEFIGSLSKLRYLNLSCGAPLE-VPR- 95 (178)
Q Consensus 19 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~-~~~- 95 (178)
....++.|++++| .+.+..|..+..+++|+.|++++|.+++. .+|..+..+++|++|++++|.+.. +|.
T Consensus 322 ~l~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNN--------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSS--------CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred hCCcccEEEeECC--------ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 3456778888887 78887888888999999999999999862 145678899999999999996665 666
Q ss_pred hccCCCCCcEEEeeCCccccCCchHHHhcc-CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 96 TLRNFSGLEYLNLENSHLFSVGSLEWLSHL-SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
.+..+++|+.|++++|++.+.. ...+ ++|++|++++|.++..+. .+..+++|++|++++|+++..++..+..
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIKSIPK---QVVKLEALQELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCcccccch---hhhcCCCCCEEECCCCcCCccCHHHhcc
Confidence 3677888899999888874332 2222 588888888888887664 4558888888888888888544443554
Q ss_pred c
Q 048040 175 W 175 (178)
Q Consensus 175 l 175 (178)
+
T Consensus 467 l 467 (520)
T 2z7x_B 467 L 467 (520)
T ss_dssp C
T ss_pred C
Confidence 3
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=3.2e-15 Score=112.53 Aligned_cols=108 Identities=21% Similarity=0.379 Sum_probs=54.1
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL 128 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (178)
+..+++|+.|++++|.++. ++. +..+++|++|++++|.+..++. +..+++|+.|++++|++..... +..+++|
T Consensus 103 ~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L 175 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP---LANLSKL 175 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred hcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh---hcCCCCC
Confidence 4444444444444444444 221 4445555555555554433332 4445555555555555433221 4555555
Q ss_pred CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
++|++++|.+++.+. +..+++|++|++++|++.+.
T Consensus 176 ~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 176 TTLKADDNKISDISP----LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp CEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBC
T ss_pred CEEECCCCccCcChh----hcCCCCCCEEEccCCccCcc
Confidence 566666555555441 45556666666666666543
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=125.80 Aligned_cols=145 Identities=21% Similarity=0.192 Sum_probs=123.7
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLR 98 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~ 98 (178)
...+++|++++| .+.+..+..|..+++|++|++++|.++.. .+..|..+++|++|++++|.+..++. .+.
T Consensus 51 l~~L~~L~Ls~n--------~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 121 (570)
T 2z63_A 51 FPELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIG 121 (570)
T ss_dssp CSSCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCT
T ss_pred CCCceEEECCCC--------cCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCcccc
Confidence 367999999999 77776677899999999999999999985 56789999999999999998777765 688
Q ss_pred CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCC----cEEEecCCCCCCCCCccccc
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSL----KTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L----~~l~l~~n~~~~~~~~~~~~ 174 (178)
.+++|++|++++|.+.....+..++.+++|++|++++|.++..+ +..++.+++| +.+++++|.+.+..|..+..
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC--GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec--HHHccchhccchhhhhcccCCCCceecCHHHhcc
Confidence 99999999999999876555677899999999999999998874 2356666666 89999999999888877765
Q ss_pred c
Q 048040 175 W 175 (178)
Q Consensus 175 l 175 (178)
+
T Consensus 200 ~ 200 (570)
T 2z63_A 200 I 200 (570)
T ss_dssp C
T ss_pred C
Confidence 3
No 62
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=118.21 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=93.1
Q ss_pred eeEEEecCCcccccccccccccchhhh--hCCCCCCEEEccCCCCCCCCch----hhhcccCCCcEEeccCCCCCccc-h
Q 048040 23 VKVLNLRTSDYEFARRKFLKGTISPAL--LKLHDLRHLDLSNNDFGGSPIP----EFIGSLSKLRYLNLSCGAPLEVP-R 95 (178)
Q Consensus 23 l~~l~l~~~~~~~~~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~-~ 95 (178)
+++|++++| .+.+..|..+ ..+.+|++|++++|.++.. .+ ..+..+++|++|++++|.+..++ .
T Consensus 93 L~~L~l~~n--------~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 163 (310)
T 4glp_A 93 LKELTLEDL--------KITGTMPPLPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCE 163 (310)
T ss_dssp CCEEEEESC--------CCBSCCCCCSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred eeEEEeeCC--------EeccchhhhhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence 555555555 6777777666 7777888888888887753 22 33446777888888877555543 4
Q ss_pred hccCCCCCcEEEeeCCccccCC---chHHHhccCCCCEEeccCCCCCCcccHHH-HHhccCCCcEEEecCCCCCCCCCcc
Q 048040 96 TLRNFSGLEYLNLENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSRDWFQ-VVAKLRSLKTFVLRSCALPPINPSF 171 (178)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~ 171 (178)
.+..+++|++|++++|++.+.. .....+.+++|++|++++|.++..+.... .+..+++|++|++++|.+.+..|+.
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 6777788888888888753311 11113566777777777777766543222 2466777777777777777766655
Q ss_pred cccc
Q 048040 172 ICGW 175 (178)
Q Consensus 172 ~~~l 175 (178)
+..+
T Consensus 244 ~~~~ 247 (310)
T 4glp_A 244 APRC 247 (310)
T ss_dssp CSSC
T ss_pred HHhc
Confidence 5443
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=4.4e-15 Score=111.78 Aligned_cols=125 Identities=21% Similarity=0.335 Sum_probs=61.6
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++| .+.+..+ +..+++|+.|++++|.++. ++ .+..+++|++|++++|.+..++. +..+
T Consensus 63 ~~L~~L~L~~n--------~i~~~~~--~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l 128 (308)
T 1h6u_A 63 NNLIGLELKDN--------QITDLAP--LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-LAGL 128 (308)
T ss_dssp TTCCEEECCSS--------CCCCCGG--GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred CCCCEEEccCC--------cCCCChh--HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-hcCC
Confidence 44555555555 3332222 4455555555555555544 22 34455555555555554444332 4455
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
++|+.|++++|.+..... +..+++|++|++++|.+++.+. +..+++|+.|++++|.+.+
T Consensus 129 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCccCc
Confidence 555555555555433321 4455555555555555554431 4455555555555555554
No 64
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=1.2e-15 Score=107.73 Aligned_cols=129 Identities=15% Similarity=0.224 Sum_probs=107.1
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchhcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRTLR 98 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~ 98 (178)
...++.|++++| .+.. ++.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.. .+..+.
T Consensus 65 l~~L~~L~l~~n--------~~~~--~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~ 133 (197)
T 4ezg_A 65 AHNIKDLTINNI--------HATN--YNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKIN 133 (197)
T ss_dssp CTTCSEEEEESC--------CCSC--CGGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred CCCCCEEEccCC--------CCCc--chhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence 367999999999 4432 23678899999999999999875 67788999999999999996654 577899
Q ss_pred CCCCCcEEEeeCCc-cccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 99 NFSGLEYLNLENSH-LFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
.+++|+.|++++|+ +...+ .+..+++|++|++++|.+++.+ .+..+++|++|++++|++.+
T Consensus 134 ~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 134 TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence 99999999999998 65443 4889999999999999999875 67889999999999999764
No 65
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=5.2e-16 Score=109.24 Aligned_cols=91 Identities=24% Similarity=0.293 Sum_probs=43.4
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (178)
+..+++|+.|++++|.+++. .|..+..+++|++|++++|.+..++. .+..+++|+.|++++|++.+.. +..+..+++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~ 127 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNS 127 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTT
T ss_pred cccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCC
Confidence 44455555555555555543 34445555555555555554443322 3444555555555555543321 122444455
Q ss_pred CCEEeccCCCCCCc
Q 048040 128 LRHLDLSYINLTKS 141 (178)
Q Consensus 128 L~~L~l~~n~i~~~ 141 (178)
|++|++++|.+...
T Consensus 128 L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 128 LTSLNLASNPFNCN 141 (192)
T ss_dssp CCEEECTTCCBCCS
T ss_pred CCEEEeCCCCccCc
Confidence 55555555555443
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=8.3e-16 Score=125.21 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=95.3
Q ss_pred CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCC
Q 048040 22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNF 100 (178)
Q Consensus 22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l 100 (178)
.++.++++++ .+....+..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+..++. .+..+
T Consensus 52 ~l~~l~l~~~--------~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 52 NQKIVTFKNS--------TMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCSEEEESSC--------EESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEeeCC--------CCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 3466666666 56655555667777888888888877764 45577777788888887776555543 56777
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC 173 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 173 (178)
++|+.|++++|.+...+. ..++.+++|++|++++|.+++.+ +..+..+++|++|++++|.+.+..+..+.
T Consensus 123 ~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 192 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHVDLSLIP 192 (597)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSCCSBCCGGGCT
T ss_pred CCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCCCCCcChhhhh
Confidence 778888888877754432 33567777888888888777764 23567777788888877777765444433
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=5.2e-15 Score=110.53 Aligned_cols=125 Identities=25% Similarity=0.295 Sum_probs=76.4
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++| .+.+..+ +..+++|+.|++++|.++. ++ .+..+++|++|++++|.+..+ ..+..+
T Consensus 68 ~~L~~L~L~~n--------~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l 133 (291)
T 1h6t_A 68 PNVTKLFLNGN--------KLTDIKP--LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDI-NGLVHL 133 (291)
T ss_dssp TTCCEEECCSS--------CCCCCGG--GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCC-GGGGGC
T ss_pred CCCCEEEccCC--------ccCCCcc--cccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCCC-hhhcCC
Confidence 45666666666 4444332 6666677777777776665 33 256666677777766655544 345566
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
++|+.|++++|++... ..+..+++|++|++++|.+++.+. +..+++|++|++++|.+++
T Consensus 134 ~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCB
T ss_pred CCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCC
Confidence 6666666666666443 235666666666666666666541 5566666666666666664
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=5.9e-15 Score=110.25 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=109.4
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++| .+... + .+..+++|+.|++++|.+++. +. +..+++|++|++++|.+..++ .+..+
T Consensus 46 ~~L~~L~l~~~--------~i~~~-~-~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l 111 (291)
T 1h6t_A 46 NSIDQIIANNS--------DIKSV-Q-GIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLS-SLKDL 111 (291)
T ss_dssp HTCCEEECTTS--------CCCCC-T-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGG-GGTTC
T ss_pred CcccEEEccCC--------CcccC-h-hHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCCh-hhccC
Confidence 56899999999 45433 2 378899999999999999984 44 899999999999999777665 48899
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
++|+.|++++|++... ..+..+++|++|++++|.+++.+ .+..+++|++|++++|.+.+..|
T Consensus 112 ~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDIT----VLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp TTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcch----hhccCCCCCEEEccCCccccchh
Confidence 9999999999998665 34788999999999999999874 67899999999999999997654
No 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=5.5e-15 Score=108.89 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=71.0
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++|. +.. ++ .+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+..+|... .
T Consensus 41 ~~L~~L~l~~n~--------i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~- 105 (263)
T 1xeu_A 41 SGVQNFNGDNSN--------IQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNGIP-S- 105 (263)
T ss_dssp TTCSEEECTTSC--------CCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTTCC-C-
T ss_pred CcCcEEECcCCC--------ccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCccc-c-
Confidence 567777777773 332 22 35566666666666666665 333 666666666666666555444322 2
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
++|+.|++++|++.+.+ .+..+++|++|++++|.+++.+ .+..+++|++|++++|++.+.
T Consensus 106 ~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC
T ss_pred CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch
Confidence 55666666666654432 2555566666666666665543 345555666666666655543
No 70
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=106.79 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=56.1
Q ss_pred CCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEe
Q 048040 54 DLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLD 132 (178)
Q Consensus 54 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (178)
+|+.|++++|.++. +|..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|++.... +..+..+++|++|+
T Consensus 32 ~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 32 DVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLS 108 (193)
T ss_dssp TCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEE
Confidence 45555555555554 4455555555555555555444443 24555555555555555554333 12245555555555
Q ss_pred ccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 133 LSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 133 l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+++|.++..+. ..+..+++|+.|++++|++.
T Consensus 109 L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPE--GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCT--TTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCeeCh--hhhhcCccccEEEeCCCCee
Confidence 55555555431 23445555555555555543
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=3.1e-15 Score=115.76 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=56.8
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .+++|.+.+..|..+..+++|++|++++|.++.. .+..+..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEE
Confidence 56788888887542 2233455555555566666666666666666652 223346666667777
Q ss_pred ccCCCCCcc-chhccCCCCCcEEEeeCCcccc
Q 048040 85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFS 115 (178)
Q Consensus 85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 115 (178)
+++|.+..+ +..+..+++|+.|++++|++..
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 666654444 3346666677777777666543
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2e-15 Score=122.96 Aligned_cols=94 Identities=20% Similarity=0.215 Sum_probs=53.4
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .+++|.+.+..|..|..+++|++|++++|.++.. .+..|..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEE
Confidence 56888999888552 3344455554455555566666666666666552 233345566666666
Q ss_pred ccCCCCCcc-chhccCCCCCcEEEeeCCcccc
Q 048040 85 LSCGAPLEV-PRTLRNFSGLEYLNLENSHLFS 115 (178)
Q Consensus 85 l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~ 115 (178)
+++|.+..+ |..+..+++|+.|++++|.+.+
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 666644433 3345556666666666665533
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=120.49 Aligned_cols=140 Identities=22% Similarity=0.203 Sum_probs=74.4
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch--hc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR--TL 97 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~ 97 (178)
...++.|++++| .+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..+|. .+
T Consensus 75 l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 145 (353)
T 2z80_A 75 CVNLQALVLTSN--------GINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145 (353)
T ss_dssp CTTCCEEECTTS--------CCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred CCCCCEEECCCC--------ccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCcccCchhhh
Confidence 366788888888 44444444455555555555555555542 22334555555555555554444433 34
Q ss_pred cCCCCCcEEEeeCC-------------------------ccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccC
Q 048040 98 RNFSGLEYLNLENS-------------------------HLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR 152 (178)
Q Consensus 98 ~~l~~L~~L~l~~n-------------------------~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~ 152 (178)
..+++|+.|++++| ++.+.. +..++.+++|++|++++|.++..+ ...+..++
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~ 222 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLL--EIFVDVTS 222 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTT
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-HHHHhccccCCeecCCCCccccch--hhhhhhcc
Confidence 44555555555544 432221 223455555666666666655444 23344567
Q ss_pred CCcEEEecCCCCCCCCCcc
Q 048040 153 SLKTFVLRSCALPPINPSF 171 (178)
Q Consensus 153 ~L~~l~l~~n~~~~~~~~~ 171 (178)
+|+.|++++|.+.+..+..
T Consensus 223 ~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp TEEEEEEESCBCTTCCCC-
T ss_pred cccEEECCCCccccccccc
Confidence 7777777777777655443
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=3.3e-15 Score=123.04 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=114.3
Q ss_pred ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCcc
Q 048040 35 FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHL 113 (178)
Q Consensus 35 ~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l 113 (178)
.++.|.+.+..+..+..+++|++|++++|.++.. .|..+..+++|++|++++|.+..+|. .+..+++|++|++++|++
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 6678888887777899999999999999999986 78889999999999999998777776 688999999999999998
Q ss_pred ccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040 114 FSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC 173 (178)
Q Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 173 (178)
...+ +..++.+++|++|++++|.+++.+ +..+.++++|++|++++|.+++..+..+.
T Consensus 110 ~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 110 QKIK-NNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp CCCC-SCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred CccC-hhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhh
Confidence 6554 234788999999999999998874 23667899999999999999987776543
No 75
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=4.3e-16 Score=127.77 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=96.8
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC-CCC-CCchhhhccc------CCCcEEeccCCCCC
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND-FGG-SPIPEFIGSL------SKLRYLNLSCGAPL 91 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~l~~l------~~L~~L~l~~~~~~ 91 (178)
...++.|++++| .+.+.+|..+..+++|++|++++|. +++ . +|..+..+ ++|++|++++|.+.
T Consensus 248 l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 248 LKDLTDVEVYNC--------PNLTKLPTFLKALPEMQLINVACNRGISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp CTTCCEEEEECC--------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred cCCCCEEEecCC--------cCCccChHHHhcCCCCCEEECcCCCCCcccc-chHHHHhhhccccCCCCCEEECCCCcCC
Confidence 357889999998 7777888888888888888888887 775 4 67777665 78888888888666
Q ss_pred ccch--hccCCCCCcEEEeeCCccc-cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCC-CcEEEecCCCCCCC
Q 048040 92 EVPR--TLRNFSGLEYLNLENSHLF-SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS-LKTFVLRSCALPPI 167 (178)
Q Consensus 92 ~~~~--~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~-L~~l~l~~n~~~~~ 167 (178)
.+|. .+..+++|+.|++++|++. ..+ .++.+++|++|++++|.++..+. .+..+++ |++|++++|.+. .
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~~lp~---~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQITEIPA---NFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEEECCT---TSEEECTTCCEEECCSSCCS-S
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccccccH---hhhhhcccCcEEEccCCcCc-c
Confidence 7777 7778888888888888775 332 35666666666666666664443 4556665 666666666665 4
Q ss_pred CCcccc
Q 048040 168 NPSFIC 173 (178)
Q Consensus 168 ~~~~~~ 173 (178)
+|..+.
T Consensus 392 lp~~~~ 397 (636)
T 4eco_A 392 IPNIFD 397 (636)
T ss_dssp CCSCCC
T ss_pred cchhhh
Confidence 444443
No 76
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.8e-15 Score=106.51 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=106.9
Q ss_pred eEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchh-hhcccCCCcEEeccCCCCCcc-chhccCCC
Q 048040 24 KVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPE-FIGSLSKLRYLNLSCGAPLEV-PRTLRNFS 101 (178)
Q Consensus 24 ~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~ 101 (178)
+.++++++ .+. .+|..+. .+++.|++++|.++.. .+. .+..+++|++|++++|.+..+ |..+..++
T Consensus 11 ~~l~~s~~--------~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGR--------GLK-EIPRDIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp TEEECTTS--------CCS-SCCSCCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CEEEcCCC--------CcC-cCccCCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence 67888888 453 4454332 3899999999999884 332 489999999999999977666 67899999
Q ss_pred CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
+|+.|++++|++.+... ..+..+++|++|++++|.+++.+ +..+..+++|++|++++|++.+.++
T Consensus 79 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 79 HIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999866543 34788999999999999999884 3478899999999999999987654
No 77
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=9.2e-16 Score=129.43 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=110.4
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCC-CCC-CCchhhhcccC-------CCcEEeccCCCC
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNND-FGG-SPIPEFIGSLS-------KLRYLNLSCGAP 90 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~l~~l~-------~L~~L~l~~~~~ 90 (178)
...++.|++++| .+.+.+|..+..+++|+.|++++|. +++ . +|..+..+. +|+.|++++|.+
T Consensus 490 L~~L~~L~Ls~N--------~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 490 LKDLTDVELYNC--------PNMTQLPDFLYDLPELQSLNIACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp CTTCCEEEEESC--------TTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CCCCCEEECcCC--------CCCccChHHHhCCCCCCEEECcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcC
Confidence 357899999999 7788888888888999999999987 775 4 777776665 888888888876
Q ss_pred Cccch--hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCC-CcEEEecCCCCCCC
Q 048040 91 LEVPR--TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRS-LKTFVLRSCALPPI 167 (178)
Q Consensus 91 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~-L~~l~l~~n~~~~~ 167 (178)
..+|. .+..+++|+.|++++|++...+ .++.+++|++|++++|.++..+. .+..+++ |+.|++++|.+. .
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~---~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPE---DFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCT---TSCEECTTCCEEECCSSCCC-S
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchH---HHhhccccCCEEECcCCCCC-c
Confidence 67887 7888888888888888876443 47788888888888888886553 5777777 888888888877 5
Q ss_pred CCcccccc
Q 048040 168 NPSFICGW 175 (178)
Q Consensus 168 ~~~~~~~l 175 (178)
+|..+..+
T Consensus 634 lp~~~~~~ 641 (876)
T 4ecn_A 634 IPNIFNAK 641 (876)
T ss_dssp CCSCCCTT
T ss_pred Cchhhhcc
Confidence 66655543
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=1.4e-14 Score=110.26 Aligned_cols=139 Identities=21% Similarity=0.338 Sum_probs=108.7
Q ss_pred CCCeeEEEecCCcccc--------------cccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040 20 TGHVKVLNLRTSDYEF--------------ARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL 85 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~--------------~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 85 (178)
...++.|++++|.+.. +..|.+.+..+ +..+++|+.|++++|.++.. +. +..+++|++|++
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SP-LANLSQLTWLEI 250 (347)
T ss_dssp CTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC
T ss_pred CCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC--cc-hhcCCCCCEEEC
Confidence 3567777887776532 22334443333 77888999999999999873 44 788899999999
Q ss_pred cCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 86 SCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
++|.+..+ ..+..+++|+.|++++|++... ..+..+++|++|++++|.+++.+ +..+..+++|++|++++|+++
T Consensus 251 ~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 251 GTNQISDI-NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNED--MEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CSSCCCCC-GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGG--HHHHHTCTTCSEEECCSSSCC
T ss_pred CCCccCCC-hhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcC--hhHhhccccCCEEEccCCccc
Confidence 99876665 4677889999999999998665 33788899999999999998775 467889999999999999999
Q ss_pred CCCC
Q 048040 166 PINP 169 (178)
Q Consensus 166 ~~~~ 169 (178)
+..|
T Consensus 325 ~~~~ 328 (347)
T 4fmz_A 325 DIRP 328 (347)
T ss_dssp CCGG
T ss_pred cccC
Confidence 8766
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.62 E-value=1.6e-15 Score=123.35 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=118.7
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 99 (178)
..++.|+|++| .+.+..+.+|.++++|++|+|++|.++.. .+..|..+++|++|++++|.+..++. .++.
T Consensus 76 ~~L~~L~Ls~N--------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 76 PELQVLDLSRC--------EIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTCCEEECTTC--------CCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred CCCCEEECCCC--------cCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 67899999999 77776677899999999999999999984 45678999999999999998877765 6899
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc-cHHHHHhccC-CCcEEEecCCCCCCCCCccccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR-DWFQVVAKLR-SLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
+++|+.|++++|.+.....+..++.+++|++|++++|.+++.+ .....+.+++ ....++++.|.+....+..+..
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~ 223 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 223 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc
Confidence 9999999999999877766677899999999999999998874 2123333443 3457889999988766665544
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=3.8e-15 Score=120.36 Aligned_cols=142 Identities=18% Similarity=0.177 Sum_probs=110.9
Q ss_pred CCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCC-chhhhcccCCCcEEeccCCCCCc-cch-
Q 048040 19 TTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP-IPEFIGSLSKLRYLNLSCGAPLE-VPR- 95 (178)
Q Consensus 19 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~-~~~- 95 (178)
....++.|++++| .+.+..|..+..+++|+.|++++|.++..+ .|..+..+++|++|++++|.+.. +|.
T Consensus 351 ~l~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 351 SPSSFTFLNFTQN--------VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp SCCCCCEEECCSS--------CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred CCCCceEEECCCC--------ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 3467888888888 788888888999999999999999998731 35668899999999999996665 665
Q ss_pred hccCCCCCcEEEeeCCccccCCchHHHhcc-CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 96 TLRNFSGLEYLNLENSHLFSVGSLEWLSHL-SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
.+..+++|+.|++++|++.+.. ...+ ++|++|++++|.++..+. .+..+++|++|++++|++++.++..+..
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSIPK---DVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCCCCCCT---TTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred hhcCcccCCEEECCCCCCCcch----hhhhcCcCCEEECCCCcCcccCh---hhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 4778889999999999875432 2334 589999999999887764 4558889999999999988655443554
Q ss_pred c
Q 048040 175 W 175 (178)
Q Consensus 175 l 175 (178)
+
T Consensus 496 l 496 (562)
T 3a79_B 496 L 496 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1.6e-15 Score=105.26 Aligned_cols=133 Identities=20% Similarity=0.251 Sum_probs=107.6
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCC-CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchh-c
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKL-HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRT-L 97 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~ 97 (178)
...++.|++++| .+.. ++. +..+ ++|+.|++++|.+++ + ..+..+++|++|++++|.+..+|.. +
T Consensus 18 ~~~L~~L~l~~n--------~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGY--------KIPV-IEN-LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp TTSCEEEECTTS--------CCCS-CCC-GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred cCCceEEEeeCC--------CCch-hHH-hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchh
Confidence 467899999999 5553 343 3444 499999999999987 4 6788999999999999988877754 4
Q ss_pred cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH-HHHHhccCCCcEEEecCCCCC
Q 048040 98 RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW-FQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~~~l~~L~~l~l~~n~~~ 165 (178)
..+++|+.|++++|++...+....+..+++|++|++++|.++..+.. ...+..+++|+.|++++|...
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88999999999999986655434688999999999999999877641 224789999999999988754
No 82
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=1.1e-15 Score=124.21 Aligned_cols=133 Identities=20% Similarity=0.155 Sum_probs=67.3
Q ss_pred cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccC--
Q 048040 40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSV-- 116 (178)
Q Consensus 40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-- 116 (178)
.+.+..|..+..+++|+.|++++|.+.....+..+..+++|++|++++|.+... |..+..+++|+.|++++|++.+.
T Consensus 387 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc
Confidence 444444555555666666666666655431122355555666666655543332 33455555566666665555331
Q ss_pred CchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 117 GSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 117 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
+....+..+++|++|++++|.+++.+ +..+..+++|++|++++|++++.+|+.+..
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFCDLSSID--QHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred ccchhhccCCCccEEECCCCccCccC--hhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 11122455555555555555555442 124455555555555555555555544443
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=5.9e-15 Score=111.80 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=97.5
Q ss_pred CCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCC--CCchhhhcccCCCcEEec
Q 048040 21 GHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGG--SPIPEFIGSLSKLRYLNL 85 (178)
Q Consensus 21 ~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~l~~l~~L~~L~l 85 (178)
..++.|++++|.+. .++.|.+.+..+..+..+.+|+.|++++|.+.. . .+..+..+++|++|++
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-ENGAFQGMKKLSYIRI 178 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB-CTTGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc-ChhhccCCCCcCEEEC
Confidence 45666666666553 223445665555566677777777777776653 2 3445555555555555
Q ss_pred cCC---------------------CCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc
Q 048040 86 SCG---------------------APLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD 143 (178)
Q Consensus 86 ~~~---------------------~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 143 (178)
++| .+..+ +..+..+++|+.|++++|++.+.. ...+..+++|++|++++|.++..+.
T Consensus 179 ~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 179 ADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp CSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred CCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCcCccCCh
Confidence 544 33333 345667778888888888775443 2346777888888888888887654
Q ss_pred HHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 144 WFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 144 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
.+..+++|++|++++|++++..+..|+.
T Consensus 258 ---~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 258 ---GLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ---TTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ---hhccCCCcCEEECCCCcCCccChhhcCC
Confidence 5677888888888888888877777654
No 84
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=4e-15 Score=103.19 Aligned_cols=123 Identities=24% Similarity=0.290 Sum_probs=65.8
Q ss_pred eeeeeeeecCCC---------CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040 9 CKWRGVHCRNTT---------GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK 79 (178)
Q Consensus 9 c~~~~~~~~~~~---------~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 79 (178)
|.|.++.|.... ..++.|++++| .+.+..+..+..+.+|++|++++|.++.. .+..+..+++
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~ 77 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESN--------KLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTK 77 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTT
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCC--------cccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCc
Confidence 566666664311 34555666655 44443344455556666666666666553 3334455666
Q ss_pred CcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040 80 LRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141 (178)
Q Consensus 80 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 141 (178)
|++|++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|++|++++|.+...
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeecc
Confidence 6666666664444433 34555666666666665543331 2234555666666666665544
No 85
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.4e-15 Score=102.67 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=98.6
Q ss_pred CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCE
Q 048040 51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRH 130 (178)
Q Consensus 51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 130 (178)
...+|+.|++++|.++...+|..+..+++|++|++++|.+..+ ..+..+++|+.|++++|.+.+. .+..++.+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence 3468999999999998222788889999999999999977766 7788999999999999998653 4566778999999
Q ss_pred EeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 131 LDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 131 L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
|++++|.+++.+. +..+..+++|++|++++|.+++..+
T Consensus 93 L~ls~N~i~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 93 LNLSGNKIKDLST-IEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EECTTSCCCSHHH-HGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EECCCCcCCChHH-HHHHhhCCCCCEEeCcCCcccchHH
Confidence 9999999998752 3578899999999999999997665
No 86
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-14 Score=100.91 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=108.3
Q ss_pred CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCC
Q 048040 22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNF 100 (178)
Q Consensus 22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l 100 (178)
..++++++++ .+.. +|.. -.++|+.|++++|.++.. .+..+..+++|++|++++|.+..++. .+..+
T Consensus 8 ~~~~l~~~~~--------~l~~-~p~~--~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 8 SGTEIRCNSK--------GLTS-VPTG--IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp ETTEEECCSS--------CCSS-CCTT--CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEEecCC--------CCcc-CCCC--CCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence 3577899888 4442 3332 236899999999999985 55677899999999999998777765 56899
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
++|+.|++++|++.+.+ ...+..+++|++|++++|.++..+. ..+..+++|++|++++|++.+.+|
T Consensus 76 ~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLP-NGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCEEECCCCCccccC-HHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeeccCc
Confidence 99999999999986654 2346889999999999999998863 456889999999999999997665
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.1e-15 Score=121.89 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=77.8
Q ss_pred cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCc
Q 048040 40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGS 118 (178)
Q Consensus 40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 118 (178)
.+.+..|..+..+++|+.|++++|.+++. .|..+. .+++|++|++++|.+..++. ...+++|+.|++++|.+.+.+
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~- 207 (487)
T 3oja_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMG- 207 (487)
T ss_dssp CCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEEC-
T ss_pred CCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCC-
Confidence 66666666666677777777777777764 455544 56777777777775555533 234677777777777765443
Q ss_pred hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 119 LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 119 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
..+..+++|+.|++++|.+++.|. .+..+++|+.|++++|++.
T Consensus 208 -~~~~~l~~L~~L~Ls~N~l~~lp~---~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 208 -PEFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -GGGGGGTTCSEEECTTSCCCEECT---TCCCCTTCCEEECTTCCBC
T ss_pred -HhHcCCCCccEEEecCCcCcccch---hhccCCCCCEEEcCCCCCc
Confidence 226667777777777777776553 4566677777777777766
No 88
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.5e-15 Score=103.33 Aligned_cols=124 Identities=23% Similarity=0.285 Sum_probs=102.4
Q ss_pred hCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCC
Q 048040 50 LKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR 129 (178)
Q Consensus 50 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (178)
...++|+.|++++|.++...+|..+..+++|++|++++|.+..+ ..+..+++|+.|++++|++.+. .+..+..+++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence 34578999999999998222788889999999999999977766 7788999999999999998664 345577899999
Q ss_pred EEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC---ccccccc
Q 048040 130 HLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP---SFICGWE 176 (178)
Q Consensus 130 ~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~---~~~~~l~ 176 (178)
+|++++|.+++.+. ...+..+++|++|++++|++.+..+ ..+..++
T Consensus 99 ~L~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 99 HLNLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp EEECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred EEeccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 99999999999753 3478899999999999999997665 3555443
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.8e-15 Score=113.95 Aligned_cols=140 Identities=21% Similarity=0.166 Sum_probs=93.6
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCC-----CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCC-Cc-
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKL-----HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAP-LE- 92 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~- 92 (178)
...++.|++++| .+.+. |..+..+ ++|++|++++|.+... .+..+..+++|++|++++|.+ +.
T Consensus 120 l~~L~~L~Ls~N--------~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 120 GPDLNILNLRNV--------SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp SCCCSEEEEESC--------BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred CCCccEEEccCC--------CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcch
Confidence 467899999999 66655 5555555 7888888888888775 557777888888888888743 32
Q ss_pred -cchhc--cCCCCCcEEEeeCCccccCCc--hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 93 -VPRTL--RNFSGLEYLNLENSHLFSVGS--LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 93 -~~~~~--~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
.+..+ ..+++|+.|++++|++...+. ...+..+++|++|++++|.+++.+. ...+..+++|++|++++|.++ .
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~ 267 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDWPSQLNSLNLSFTGLK-Q 267 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCCCTTCCEEECTTSCCS-S
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhhcCCCCEEECCCCccC-h
Confidence 23333 677788888888887753221 1223566778888888887776531 123445677777777777777 4
Q ss_pred CCcc
Q 048040 168 NPSF 171 (178)
Q Consensus 168 ~~~~ 171 (178)
+|..
T Consensus 268 ip~~ 271 (312)
T 1wwl_A 268 VPKG 271 (312)
T ss_dssp CCSS
T ss_pred hhhh
Confidence 4443
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=4.3e-15 Score=109.51 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=109.3
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN 99 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 99 (178)
...++.|++++| .+.+..+ +..+++|+.|++++|.++. ++.. .. ++|++|++++|.+..++ .+..
T Consensus 62 l~~L~~L~L~~N--------~i~~~~~--l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~ 126 (263)
T 1xeu_A 62 FTNLKELHLSHN--------QISDLSP--LKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLFLDNNELRDTD-SLIH 126 (263)
T ss_dssp CTTCCEEECCSS--------CCCCCGG--GTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEECCSSCCSBSG-GGTT
T ss_pred CCCCCEEECCCC--------ccCCChh--hccCCCCCEEECCCCccCC--cCcc-cc-CcccEEEccCCccCCCh-hhcC
Confidence 468999999999 6665444 8899999999999999988 4433 23 89999999999877765 5889
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSF 171 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 171 (178)
+++|+.|++++|++.+.+ .+..+++|++|++++|.+++.. .+..+++|+.|++++|++.......
T Consensus 127 l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~----~l~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG----GLTRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp CTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT----TSTTCCCCCEEEEEEEEEECCCEEC
T ss_pred cccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH----HhccCCCCCEEeCCCCcccCCcccc
Confidence 999999999999987663 4888999999999999998873 6789999999999999988764443
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=8.2e-16 Score=116.09 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=62.0
Q ss_pred cccccchhhhhCCCCCCEEEccCCCCCCCCchhhh-cccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCc
Q 048040 40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFI-GSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGS 118 (178)
Q Consensus 40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 118 (178)
.+.+..+..+..+++|+.|++++|.++.. .+..+ ..+++|++|++++|.+..++.. ..+++|+.|++++|++.+.+
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~- 207 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMG- 207 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEEC-
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcch-
Confidence 44444444455555555555555555553 23333 2455555566555544444322 23555666666666554332
Q ss_pred hHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 119 LEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 119 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
..+..+++|++|++++|.++..+. .+..+++|+.|++++|++.
T Consensus 208 -~~~~~l~~L~~L~L~~N~l~~l~~---~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 -PEFQSAAGVTWISLRNNKLVLIEK---ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -GGGGGGTTCSEEECTTSCCCEECT---TCCCCTTCCEEECTTCCCB
T ss_pred -hhhcccCcccEEECcCCcccchhh---HhhcCCCCCEEEccCCCcc
Confidence 125555566666666666655443 3455556666666666555
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.1e-15 Score=110.91 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=92.9
Q ss_pred CCeeEEEecCCc-cc----------------cccc-ccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCc-
Q 048040 21 GHVKVLNLRTSD-YE----------------FARR-KFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLR- 81 (178)
Q Consensus 21 ~~l~~l~l~~~~-~~----------------~~~~-~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~- 81 (178)
..++.|++++|. +. .+++ |.+.+..+..|..+++|+.|++++|.++. +|. +..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDI 131 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCS
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccccc
Confidence 668888888885 42 2233 45554444556666666666666666665 343 55555665
Q ss_pred --EEeccCC-CCCccch-hccCCCCCc-EEEeeCCccccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhcc-CCC
Q 048040 82 --YLNLSCG-APLEVPR-TLRNFSGLE-YLNLENSHLFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKL-RSL 154 (178)
Q Consensus 82 --~L~l~~~-~~~~~~~-~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l-~~L 154 (178)
+|++++| .+..++. .+..+++|+ .|++++|++...+. ..+.. ++|++|++++|. ++..+ ...+..+ ++|
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~--~~~~~~l~~~L 207 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVID--KDAFGGVYSGP 207 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEEC--TTTTTTCSBCC
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCC--HHHhhccccCC
Confidence 6777666 6666554 466677777 77777777654432 11233 677778888774 77664 2356677 788
Q ss_pred cEEEecCCCCCCCCCcccccc
Q 048040 155 KTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 155 ~~l~l~~n~~~~~~~~~~~~l 175 (178)
+.|++++|++++..+..+..+
T Consensus 208 ~~L~l~~N~l~~l~~~~~~~L 228 (239)
T 2xwt_C 208 SLLDVSQTSVTALPSKGLEHL 228 (239)
T ss_dssp SEEECTTCCCCCCCCTTCTTC
T ss_pred cEEECCCCccccCChhHhccC
Confidence 888888888876655545444
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=4.1e-15 Score=118.52 Aligned_cols=145 Identities=19% Similarity=0.137 Sum_probs=107.4
Q ss_pred CCCeeEEEecCCccc-----------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040 20 TGHVKVLNLRTSDYE-----------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG 88 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~-----------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~ 88 (178)
...++.|++++|.+. .+++|.+.+..+. .+++|+.|++++|.+++. .|..+..+++|++|++++|
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 79 LSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp CTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTS
T ss_pred CCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCC
Confidence 345666666666553 2344455544432 457788889999998885 5777888999999999999
Q ss_pred CCCc-cchhcc-CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 89 APLE-VPRTLR-NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 89 ~~~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
.+.. .|..+. .+++|+.|++++|.+.+.+. ...+++|++|++++|.+++.+. .+..+++|+.|++++|.+++
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG---GGGGGTTCSEEECTTSCCCE
T ss_pred CCCCcChHHHhhhCCcccEEecCCCccccccc---cccCCCCCEEECCCCCCCCCCH---hHcCCCCccEEEecCCcCcc
Confidence 6655 455664 78999999999999866532 4458899999999999998864 47889999999999999996
Q ss_pred CCCcccccc
Q 048040 167 INPSFICGW 175 (178)
Q Consensus 167 ~~~~~~~~l 175 (178)
+|..+..+
T Consensus 229 -lp~~l~~l 236 (487)
T 3oja_A 229 -IEKALRFS 236 (487)
T ss_dssp -ECTTCCCC
T ss_pred -cchhhccC
Confidence 55555543
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=8.6e-15 Score=118.63 Aligned_cols=108 Identities=23% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEecc
Q 048040 55 LRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLS 134 (178)
Q Consensus 55 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (178)
|+.|++++|.++. +|. +..+++|+.|++++|.+..+|..+..+++|+.|++++|++.+.+ .++.+++|++|+++
T Consensus 443 L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD---GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc---ccCCCCCCcEEECC
Confidence 5556666665555 343 55555666666665555555555555666666666666554432 35555566666666
Q ss_pred CCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 135 YINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 135 ~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
+|.+++.+. +..++.+++|+.|++++|++++.+|
T Consensus 517 ~N~l~~~~~-p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSST-TGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCC-cHHHhcCCCCCEEEecCCcCCCCcc
Confidence 666555510 1245555666666666665554433
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.5e-15 Score=115.04 Aligned_cols=143 Identities=24% Similarity=0.213 Sum_probs=79.6
Q ss_pred CCeeEEEecCCccccccccccccc-chhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCc--cchh
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGT-ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLE--VPRT 96 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~--~~~~ 96 (178)
..++.|++++| .+.+. ++..+..+++|+.|++++|.+++. .+..+..+++|++|++++| .+.. ++..
T Consensus 93 ~~L~~L~L~~~--------~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 93 FRVQHMDLSNS--------VIEVSTLHGILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp BCCCEEECTTC--------EECHHHHHHHHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred CCCCEEEccCC--------CcCHHHHHHHHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 34555555555 45444 555566666666666666666653 5556666666666666666 4442 3444
Q ss_pred ccCCCCCcEEEeeCC-ccccCCchHHHhccC-CCCEEeccCC--CCCCcccHHHHHhccCCCcEEEecCCC-CCCCCCcc
Q 048040 97 LRNFSGLEYLNLENS-HLFSVGSLEWLSHLS-SLRHLDLSYI--NLTKSRDWFQVVAKLRSLKTFVLRSCA-LPPINPSF 171 (178)
Q Consensus 97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~-~L~~L~l~~n--~i~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~ 171 (178)
+..+++|+.|++++| .+.....+..+..++ +|++|++++| .+++. .++..+..+++|++|++++|. +++..+..
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH-HHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 555666666666666 553332334455566 6666666666 33322 123345556666666666665 44444444
Q ss_pred cc
Q 048040 172 IC 173 (178)
Q Consensus 172 ~~ 173 (178)
++
T Consensus 243 l~ 244 (336)
T 2ast_B 243 FF 244 (336)
T ss_dssp GG
T ss_pred Hh
Confidence 43
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=2e-14 Score=117.27 Aligned_cols=126 Identities=25% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccC
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRN 99 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 99 (178)
...|+.|+|++| .+.+..+ +..+++|+.|+|++|.+.. ++ .+..+++|+.|++++|.+..+ ..+..
T Consensus 64 l~~L~~L~Ls~N--------~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~ 129 (605)
T 1m9s_A 64 LPNVTKLFLNGN--------KLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDI-NGLVH 129 (605)
T ss_dssp CTTCCEEECTTS--------CCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCC-GGGGG
T ss_pred CCCCCEEEeeCC--------CCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCC-ccccC
Confidence 356777777777 3443222 4555555555555555554 22 344555555555555544333 23444
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
+++|+.|++++|++... ..+..+++|++|++++|.+++.+. +..+++|+.|++++|.+.+
T Consensus 130 l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 130 LPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCB
T ss_pred CCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCC
Confidence 45555555555554332 224444555555555555544431 4444455555555544443
No 97
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=125.53 Aligned_cols=142 Identities=23% Similarity=0.245 Sum_probs=109.9
Q ss_pred CCCeeEEEecCCcccccccccccccc-hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc-cchh-
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTI-SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE-VPRT- 96 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~- 96 (178)
-..++.|++++| ...+.+ |..|.++++|++|++++|.+... .|..+..+++|++|++++|.+.. .|..
T Consensus 47 l~~L~~LdLs~n--------~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 47 LEQLQLLELGSQ--------YTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp CCSCSEEEECTT--------CCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred cccCeEEeCCCC--------CCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 477999999998 555566 66889999999999999999885 68889999999999999996553 4543
Q ss_pred -ccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhcc--CCCcEEEecCCCCCCCCCccc
Q 048040 97 -LRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKL--RSLKTFVLRSCALPPINPSFI 172 (178)
Q Consensus 97 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l--~~L~~l~l~~n~~~~~~~~~~ 172 (178)
+..+++|++|++++|.+.+......++.+++|++|++++|.+++... ..+..+ ++|+.|+++.|.+.+..|..+
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~--~~l~~l~~~~L~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE--HELEPLQGKTLSFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS--GGGHHHHHCSSCCCEECCSBSCCCCCCCC
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH--HHcccccCCccceEECCCCccccccccch
Confidence 88899999999999998776554568899999999999999877631 233333 666677777666666555543
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=8.8e-16 Score=127.66 Aligned_cols=141 Identities=23% Similarity=0.212 Sum_probs=111.8
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|+|++| .+. .+|..+..+.+|+.|+|++|.++. +|..+..+++|++|+|++|.+..+|..+..+
T Consensus 224 ~~L~~L~Ls~n--------~l~-~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 224 QLWHALDLSNL--------QIF-NISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp CCCCEEECTTS--------CCS-CCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred CCCcEEECCCC--------CCC-CCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 56777888887 666 677777799999999999999995 8899999999999999999888899999999
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccC-CCcEEEecCCCCCCCCCccccccc
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLR-SLKTFVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~ 176 (178)
++|+.|++++|.+..++ ..++.+++|++|++++|.+++.+ +..+..+. .+..+++.+|.+++.+|..+..+.
T Consensus 293 ~~L~~L~L~~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLP--WEFGNLCNLQFLGVEGNPLEKQF--LKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCCCCC--SSTTSCTTCCCEECTTSCCCSHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred CCCCEEECCCCCCCccC--hhhhcCCCccEEeCCCCccCCCC--hHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence 99999999999986554 34899999999999999999874 23443332 223467778888888887776554
No 99
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=6.1e-15 Score=116.83 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCeeEEEecCCccc----------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 21 GHVKVLNLRTSDYE----------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 21 ~~l~~l~l~~~~~~----------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
..++.|++++|.+. .+..|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|+.|+
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLE 206 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceee
Confidence 56777777777432 1222344444444455555555555555555543 233444444444444
Q ss_pred ccCC-CCCccch------------------------hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCC
Q 048040 85 LSCG-APLEVPR------------------------TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLT 139 (178)
Q Consensus 85 l~~~-~~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~ 139 (178)
+++| ....+|. .+..+++|+.|++++|++.... ...+..+++|+.|++++|.++
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCSSCCS
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-hhhccccccCCEEECCCCccc
Confidence 4443 2222222 2334444444444444433222 112344444555555555544
Q ss_pred CcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 140 KSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 140 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
+.. +..+..+++|+.|++++|.+++..+..|..
T Consensus 286 ~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 286 VVE--PYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp EEC--TTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred eEC--HHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 442 224555666666666666666555554443
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.59 E-value=1.8e-14 Score=109.70 Aligned_cols=144 Identities=17% Similarity=0.270 Sum_probs=102.7
Q ss_pred CCCCeeEEEecCCccc--------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEe
Q 048040 19 TTGHVKVLNLRTSDYE--------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLN 84 (178)
Q Consensus 19 ~~~~l~~l~l~~~~~~--------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 84 (178)
....++.|++++|.+. .+++|.+.+.. . +..+++|+.+++++|.+... +. +..+++|++|+
T Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~ 227 (347)
T 4fmz_A 153 NMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDI--TP-VANMTRLNSLK 227 (347)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEE
T ss_pred hCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc-c-ccCCCccceeecccCCCCCC--ch-hhcCCcCCEEE
Confidence 4468999999999653 22334444322 2 55666666666666666653 22 66778888888
Q ss_pred ccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCC
Q 048040 85 LSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCAL 164 (178)
Q Consensus 85 l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~ 164 (178)
+++|.+..++. +..+++|+.|++++|.+... ..+..+++|++|++++|.+++.+ .+..+++|+.|++++|.+
T Consensus 228 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 228 IGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp CCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCC
T ss_pred ccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCcC
Confidence 88886666655 77888888888888887554 33777888888888888888775 467888899999999988
Q ss_pred CCCCCcccccc
Q 048040 165 PPINPSFICGW 175 (178)
Q Consensus 165 ~~~~~~~~~~l 175 (178)
.+..|..++.+
T Consensus 300 ~~~~~~~l~~l 310 (347)
T 4fmz_A 300 GNEDMEVIGGL 310 (347)
T ss_dssp CGGGHHHHHTC
T ss_pred CCcChhHhhcc
Confidence 87777666554
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.59 E-value=2.7e-14 Score=112.99 Aligned_cols=110 Identities=20% Similarity=0.316 Sum_probs=62.6
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL 128 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (178)
+..+++|+.|++++|.++.. +. +..+++|+.|++++|.+..++. +..+++|+.|++++|++.+... +..+++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L 333 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNI--SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP---VSSLTKL 333 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred hhcCCCCCEEECCCCccCcc--cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh---hccCccC
Confidence 55566666666666666552 22 5556666666666665444433 4555666666666666543321 4555666
Q ss_pred CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
++|++++|.+++.+ .+..+++|+.|++++|++.+..|
T Consensus 334 ~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 334 QRLFFYNNKVSDVS----SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCBCGG
T ss_pred CEeECCCCccCCch----hhccCCCCCEEeCCCCccCccch
Confidence 66666666665553 34556666666666666655444
No 102
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.59 E-value=1.9e-14 Score=115.69 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=88.5
Q ss_pred CCCeeEEEecCCcccccccccccccchhh---hhCCCCCCEEEccCCCCCCCCch---hhhcccCCCcEEeccCCCCCcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPA---LLKLHDLRHLDLSNNDFGGSPIP---EFIGSLSKLRYLNLSCGAPLEV 93 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~ 93 (178)
...++.|++++| .+.+.+|.. +..+++|+.|++++|.++. ++ ..+..+++|++|++++|.+..+
T Consensus 333 l~~L~~L~Ls~N--------~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~l 402 (549)
T 2z81_A 333 LKSLEFLDLSEN--------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPM 402 (549)
T ss_dssp CTTCCEEECCSS--------CCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred CccccEEEccCC--------ccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCccC
Confidence 357888888888 555544332 4556666666666666665 22 3456666666666666655555
Q ss_pred chhccCCCCCcEEEeeCCccccCCch----------------HHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040 94 PRTLRNFSGLEYLNLENSHLFSVGSL----------------EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157 (178)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 157 (178)
|..+..+++|+.|++++|++...+.. .....+++|++|++++|.++..+. ...+++|++|
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~----~~~l~~L~~L 478 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD----ASLFPVLLVM 478 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC----GGGCTTCCEE
T ss_pred ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC----cccCccCCEE
Confidence 55555555555555555554322110 001356778888888888876663 3567788888
Q ss_pred EecCCCCCCCCCccccccc
Q 048040 158 VLRSCALPPINPSFICGWE 176 (178)
Q Consensus 158 ~l~~n~~~~~~~~~~~~l~ 176 (178)
++++|++++.+|..+..++
T Consensus 479 ~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp ECCSSCCCCCCTTGGGGCT
T ss_pred ecCCCccCCcCHHHHhcCc
Confidence 8888888877777665543
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=5.7e-15 Score=113.43 Aligned_cols=135 Identities=24% Similarity=0.240 Sum_probs=113.0
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhcc
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLR 98 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~ 98 (178)
...++.|++++| .+.+..+..|..+.+|+.|+|++|.++.. .+..|..+++|+.|++++|.+..+ +..+.
T Consensus 63 l~~L~~L~L~~N--------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 133 (361)
T 2xot_A 63 LTNLHSLLLSHN--------HLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133 (361)
T ss_dssp CTTCCEEECCSS--------CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccccCEEECCCC--------cCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHHHhC
Confidence 467899999999 77776677899999999999999999985 566789999999999999977766 56889
Q ss_pred CCCCCcEEEeeCCccccCCchHHH---hccCCCCEEeccCCCCCCcccHHHHHhccCC--CcEEEecCCCCCC
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWL---SHLSSLRHLDLSYINLTKSRDWFQVVAKLRS--LKTFVLRSCALPP 166 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~--L~~l~l~~n~~~~ 166 (178)
.+++|+.|++++|++...+. ..+ ..+++|++|++++|.++..+ ...+..++. ++.|++++|++..
T Consensus 134 ~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP--LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC--HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC--HHHhhhccHhhcceEEecCCCccC
Confidence 99999999999999976653 223 57899999999999999887 457778876 4889999998864
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=1.7e-14 Score=109.40 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=104.4
Q ss_pred CCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCC--CCchhhhccc--------
Q 048040 21 GHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGG--SPIPEFIGSL-------- 77 (178)
Q Consensus 21 ~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~l~~l-------- 77 (178)
..++.|++++|.+. .+++|.+.+..+..+..+++|+.|++++|.++. . .+..+..+
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-EPGAFDGLKLNYLRIS 180 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-CTTSSCSCCCSCCBCC
T ss_pred CCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-CcccccCCccCEEECc
Confidence 56777777777653 234446665555567778888888888887752 2 23333333
Q ss_pred ------------CCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccH
Q 048040 78 ------------SKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDW 144 (178)
Q Consensus 78 ------------~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 144 (178)
++|++|++++|.+..++ ..+..+++|+.|++++|++.+.. +..+..+++|++|++++|.++..+.
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~- 258 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNKLSRVPA- 258 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSCCCBCCT-
T ss_pred CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCcCeecCh-
Confidence 35566666666444443 46777888888888888875554 2347788899999999999887764
Q ss_pred HHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 145 FQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 145 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
.+..+++|++|++++|++++..+..|+..
T Consensus 259 --~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 259 --GLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp --TGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred --hhhcCccCCEEECCCCCCCccChhHcccc
Confidence 57888999999999999988777776654
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=2.1e-15 Score=113.80 Aligned_cols=57 Identities=32% Similarity=0.334 Sum_probs=29.9
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG 88 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~ 88 (178)
..++.|++++| .+.+..|..+..+++|+.|++++|.+++. +. +..+++|++|++++|
T Consensus 34 ~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 34 WNVKELDLSGN--------PLSQISAADLAPFTKLELLNLSSNVLYET--LD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp GGCSEEECTTS--------CCCCCCHHHHTTCTTCCEEECTTSCCEEE--EE-ETTCTTCCEEECCSS
T ss_pred CCCCEEECcCC--------ccCcCCHHHhhCCCcCCEEECCCCcCCcc--hh-hhhcCCCCEEECcCC
Confidence 46777888777 44444444555555555555555555432 11 444444444444444
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=2.1e-14 Score=117.10 Aligned_cols=134 Identities=23% Similarity=0.285 Sum_probs=112.6
Q ss_pred CCCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhcc
Q 048040 19 TTGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLR 98 (178)
Q Consensus 19 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 98 (178)
....|+.|+|++| .+.+ + +.+..+++|+.|+|++|.+.. + ..+..+++|+.|++++|.+..+ ..+.
T Consensus 85 ~l~~L~~L~Ls~N--------~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~ 150 (605)
T 1m9s_A 85 NLKNLGWLFLDEN--------KIKD-L-SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI-TVLS 150 (605)
T ss_dssp GCTTCCEEECCSS--------CCCC-C-TTSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC-GGGG
T ss_pred cCCCCCEEECcCC--------CCCC-C-hhhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc-hhhc
Confidence 3467999999999 5553 2 358889999999999999987 4 3588999999999999977766 6788
Q ss_pred CCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccc
Q 048040 99 NFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFIC 173 (178)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 173 (178)
.+++|+.|++++|.+.+... +..+++|++|++++|.+++.+ .+..+++|+.|++++|++.+.+...+.
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~----~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR----ALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG----GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh----HHccCCCCCEEEccCCcCcCCcccccc
Confidence 99999999999999866543 888999999999999999875 578899999999999998876544443
No 107
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1.1e-17 Score=118.22 Aligned_cols=118 Identities=23% Similarity=0.247 Sum_probs=96.1
Q ss_pred hhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhcc
Q 048040 46 SPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHL 125 (178)
Q Consensus 46 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (178)
|..+..+++|+.|++++|.++. +| .+..+++|++|++++|.+..+|..+..+++|+.|++++|++.+. ..+..+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l---~~~~~l 114 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL---SGIEKL 114 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH---HHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC---CccccC
Confidence 3488889999999999999987 55 78888999999999987777777777778899999999988553 247888
Q ss_pred CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCc
Q 048040 126 SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPS 170 (178)
Q Consensus 126 ~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 170 (178)
++|++|++++|.++..+. ...+..+++|++|++++|++.+.+|.
T Consensus 115 ~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCcccccccc
Confidence 899999999999988753 35788899999999999988765443
No 108
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=4.7e-14 Score=99.34 Aligned_cols=123 Identities=24% Similarity=0.289 Sum_probs=102.2
Q ss_pred ceeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC
Q 048040 8 CCKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS 78 (178)
Q Consensus 8 ~c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 78 (178)
.|.+..+.|... ...++.|++++| .+. .+|..+..+.+|+.|++++|.++.. .+..|..++
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n--------~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~ 78 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGN--------QFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMT 78 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSS--------CCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCC--------cCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCC
Confidence 355666666532 256889999999 665 5678899999999999999999986 677899999
Q ss_pred CCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040 79 KLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141 (178)
Q Consensus 79 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 141 (178)
+|++|++++|.+..++. .+..+++|+.|++++|++...+. ..+..+++|+.|++++|.+...
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECS
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecC
Confidence 99999999998777754 78999999999999999876553 3478899999999999998765
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.3e-14 Score=109.89 Aligned_cols=134 Identities=28% Similarity=0.302 Sum_probs=101.1
Q ss_pred CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCC-CCCCCCchhhhcccCCCcEEeccCC-CCCc--cch
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNN-DFGGSPIPEFIGSLSKLRYLNLSCG-APLE--VPR 95 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~--~~~ 95 (178)
...++.|++++| .+.+..+..+..+++|+.|++++| .+++..++..+..+++|++|++++| .+.. ++.
T Consensus 117 ~~~L~~L~L~~~--------~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 117 CSKLQNLSLEGL--------RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp BCCCSEEECTTC--------BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred CCCCCEEeCcCc--------ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 468999999999 677777888888889999999998 5764225666788888999999888 6664 455
Q ss_pred hccCCC-CCcEEEeeCCc--cccCCchHHHhccCCCCEEeccCCC-CCCcccHHHHHhccCCCcEEEecCCC
Q 048040 96 TLRNFS-GLEYLNLENSH--LFSVGSLEWLSHLSSLRHLDLSYIN-LTKSRDWFQVVAKLRSLKTFVLRSCA 163 (178)
Q Consensus 96 ~~~~l~-~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~l~~L~~l~l~~n~ 163 (178)
.+..++ +|+.|++++|. +.....+..+..+++|++|++++|. +++.. +..+..+++|++|++++|.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--FQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTCT
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH--HHHHhCCCCCCEeeCCCCC
Confidence 677788 88889888884 3323334556778888888888888 55442 2366778888888888885
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=108.52 Aligned_cols=134 Identities=18% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCCeeEEEecCCcccccccccccccch----hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCc---
Q 048040 20 TGHVKVLNLRTSDYEFARRKFLKGTIS----PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLE--- 92 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--- 92 (178)
...++.|++++| .+.+..+ ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+..
T Consensus 116 ~~~L~~L~Ls~n--------~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 186 (310)
T 4glp_A 116 GLALSSLRLRNV--------SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERG 186 (310)
T ss_dssp CBCCSSCEEESC--------CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHH
T ss_pred CCCCCEEEeecc--------cccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchh
Confidence 345777778777 4444322 2334566777777777777664 45566666777777777664321
Q ss_pred cch--hccCCCCCcEEEeeCCccccCCch--HHHhccCCCCEEeccCCCCCCc-ccHHHHHhcc---CCCcEEEecCCCC
Q 048040 93 VPR--TLRNFSGLEYLNLENSHLFSVGSL--EWLSHLSSLRHLDLSYINLTKS-RDWFQVVAKL---RSLKTFVLRSCAL 164 (178)
Q Consensus 93 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~l---~~L~~l~l~~n~~ 164 (178)
++. .+..+++|+.|++++|++...+.. ..++.+++|++|++++|.+++. |. .+..+ ++|++|++++|++
T Consensus 187 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~---~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 187 LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP---SAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---CCSSCCCCTTCCCEECCSSCC
T ss_pred hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh---hHHhccCcCcCCEEECCCCCC
Confidence 211 224566666666666665332211 1235556666666666666655 32 22333 4666666666666
Q ss_pred C
Q 048040 165 P 165 (178)
Q Consensus 165 ~ 165 (178)
+
T Consensus 264 ~ 264 (310)
T 4glp_A 264 E 264 (310)
T ss_dssp C
T ss_pred C
Confidence 6
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=3.8e-13 Score=106.39 Aligned_cols=107 Identities=25% Similarity=0.400 Sum_probs=53.7
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL 128 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (178)
+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+..++. +..+++|+.|++++|++.+... +..+++|
T Consensus 239 l~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP---ISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred hhcCCCCCEEECCCCccccc--hh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh---hcCCCCC
Confidence 33444444444444444432 11 4444555555555554433333 4455555555555555433321 4555566
Q ss_pred CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 129 RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 129 ~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
++|++++|.+++.+. +..+++|+.|++++|++.+
T Consensus 312 ~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 312 TYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp SEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCC
T ss_pred CEEECcCCcCCCchh----hccCccCCEeECCCCccCC
Confidence 666666666555531 4455666666666666554
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=1e-13 Score=106.41 Aligned_cols=140 Identities=23% Similarity=0.232 Sum_probs=68.4
Q ss_pred CCeeEEEecCCcccccccccccccch----hhhhCCC-CCCEEEccCCCCCCCCchhhhccc-----CCCcEEeccCCCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTIS----PALLKLH-DLRHLDLSNNDFGGSPIPEFIGSL-----SKLRYLNLSCGAP 90 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~~~~ 90 (178)
..++.|++++| .+.+..+ ..+..++ +|+.|++++|.+++. .+..+..+ ++|++|++++|.+
T Consensus 22 ~~L~~L~Ls~n--------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 22 HGVTSLDLSLN--------NLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp TTCCEEECTTS--------CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCceEEEccCC--------CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcC
Confidence 44777777777 4444333 4455555 566666666666553 34444443 5566666666644
Q ss_pred Cccc-h----hccCC-CCCcEEEeeCCccccCCchHH---Hhc-cCCCCEEeccCCCCCCcc--cHHHHHhccC-CCcEE
Q 048040 91 LEVP-R----TLRNF-SGLEYLNLENSHLFSVGSLEW---LSH-LSSLRHLDLSYINLTKSR--DWFQVVAKLR-SLKTF 157 (178)
Q Consensus 91 ~~~~-~----~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~~-l~~L~~L~l~~n~i~~~~--~~~~~~~~l~-~L~~l 157 (178)
...+ . .+..+ ++|+.|++++|++........ +.. .++|++|++++|.+++.. .++..+..++ +|++|
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence 3221 1 13333 456666666665543332111 112 135555555555554331 1222333333 55555
Q ss_pred EecCCCCCCCCC
Q 048040 158 VLRSCALPPINP 169 (178)
Q Consensus 158 ~l~~n~~~~~~~ 169 (178)
++++|.+.+..+
T Consensus 173 ~Ls~n~l~~~~~ 184 (362)
T 3goz_A 173 NLRGNNLASKNC 184 (362)
T ss_dssp ECTTSCGGGSCH
T ss_pred eecCCCCchhhH
Confidence 555555554443
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.1e-13 Score=112.19 Aligned_cols=125 Identities=26% Similarity=0.270 Sum_probs=102.2
Q ss_pred CeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCC
Q 048040 22 HVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFS 101 (178)
Q Consensus 22 ~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 101 (178)
.++.|++++| .+.+ +|. +..+++|+.|++++|.++. +|..+..+++|+.|++++|.+..+| .+..++
T Consensus 442 ~L~~L~Ls~n--------~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHK--------DLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLP 508 (567)
T ss_dssp TCSEEECTTS--------CCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred CceEEEecCC--------CCCC-CcC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCCCc-ccCCCC
Confidence 4778888888 6665 555 8889999999999999985 7889999999999999999777787 888999
Q ss_pred CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc-HHHHHhccCCCcEEEe
Q 048040 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-WFQVVAKLRSLKTFVL 159 (178)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~l~~L~~l~l 159 (178)
+|+.|++++|++.+...+..++.+++|+.|++++|.+++.+. ....+..+++|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999998666434568899999999999999988743 2345566888988864
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=3e-14 Score=110.08 Aligned_cols=40 Identities=30% Similarity=0.472 Sum_probs=20.1
Q ss_pred hCCCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCC
Q 048040 50 LKLHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGA 89 (178)
Q Consensus 50 ~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~ 89 (178)
..+++|+.|++++|.++... ++..+..+++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 45555555555555555410 33444455555555555553
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.6e-14 Score=97.00 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=94.6
Q ss_pred hhhCCCCCCEEEccCCCCCCCCchhhhcccC-CCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040 48 ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS-KLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS 126 (178)
Q Consensus 48 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (178)
.+....+|+.|++++|.++. ++. +..+. +|++|++++|.+..+ ..+..+++|+.|++++|++.+.+ +..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC-cchhhcCC
Confidence 35678899999999999996 544 44454 999999999977766 67889999999999999986654 23358899
Q ss_pred CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
+|++|++++|.++..+. ...+..+++|++|++++|++...
T Consensus 89 ~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~ 128 (176)
T 1a9n_A 89 DLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNK 128 (176)
T ss_dssp TCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGS
T ss_pred CCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCc
Confidence 99999999999988764 34678999999999999999854
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=9.8e-14 Score=112.37 Aligned_cols=136 Identities=20% Similarity=0.212 Sum_probs=71.8
Q ss_pred CCCce-----eeeee-eecCCCCCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCC
Q 048040 5 KRDCC-----KWRGV-HCRNTTGHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDF 65 (178)
Q Consensus 5 ~~~~c-----~~~~~-~~~~~~~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~ 65 (178)
..++| .|.++ .|.. ..++.|++++|.+. .+++|.+. .+| ..+++|+.|++++|.+
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l 112 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNRL 112 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCC
T ss_pred cCCccccccchhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCC
Confidence 44566 67777 5643 57888888888442 11222333 223 2234455555555555
Q ss_pred CCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHH
Q 048040 66 GGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWF 145 (178)
Q Consensus 66 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 145 (178)
+. +|. +.. +|++|++++|.+..+|. .+++|+.|++++|++.+.+. .+++|++|++++|.+++.+.
T Consensus 113 ~~--ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~-- 177 (571)
T 3cvr_A 113 ST--LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE-- 177 (571)
T ss_dssp SC--CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--
T ss_pred CC--cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCcch--
Confidence 44 233 322 45555555554444443 34555566666555544331 34566666666666665542
Q ss_pred HHHhccCCCcEEEecCCCCC
Q 048040 146 QVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 146 ~~~~~l~~L~~l~l~~n~~~ 165 (178)
+. ++|+.|++++|.++
T Consensus 178 --l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 178 --LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp --CC--TTCCEEECCSSCCS
T ss_pred --hh--CCCCEEECcCCCCC
Confidence 22 56666666666666
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=5.4e-14 Score=113.85 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=63.3
Q ss_pred CCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCC--
Q 048040 51 KLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSL-- 128 (178)
Q Consensus 51 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-- 128 (178)
.+++|+.|++++|.++. +|. .+++|+.|++++|.+..+|. +. ++|+.|++++|++...+. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~ 204 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA---VPV--RNHH 204 (571)
T ss_dssp CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC---CC-------
T ss_pred cCccccEEeCCCCccCc--CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh---HHH--hhhc
Confidence 34455555555555554 232 34556666666665555555 33 566666666666654432 221 44
Q ss_pred -----CEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 129 -----RHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 129 -----~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+.|++++|.|+..|. .+..+++|+.|++++|++++.+|..++.+
T Consensus 205 ~~~~L~~L~Ls~N~l~~lp~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 205 SEETEIFFRCRENRITHIPE---NILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ---CCEEEECCSSCCCCCCG---GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ccccceEEecCCCcceecCH---HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 777777777776653 45557777777777777777666665543
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=7.5e-13 Score=104.70 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=62.0
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++| .+.+. | .+..+++|+.|++++|.+++ ++ +..+++|++|++++|.+..++ +..+
T Consensus 42 ~~L~~L~Ls~n--------~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 42 ATLTSLDCHNS--------SITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp TTCCEEECCSS--------CCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred CCCCEEEccCC--------CcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cCCC
Confidence 56778888887 44432 3 45666677777777776666 32 556666666666666554443 5566
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 141 (178)
++|+.|++++|++.+.+ ++.+++|++|++++|.+++.
T Consensus 106 ~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp TTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCC
T ss_pred CcCCEEECCCCcCCeec----CCCCCcCCEEECCCCcccee
Confidence 66666666666654432 45556666666666665553
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.46 E-value=1.2e-12 Score=103.50 Aligned_cols=139 Identities=21% Similarity=0.171 Sum_probs=84.0
Q ss_pred CCCeeEEEecCCccc-------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEecc
Q 048040 20 TGHVKVLNLRTSDYE-------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLS 86 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~-------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~ 86 (178)
...++.|++++|.+. .++.|.+.+. + +..+++|+.|++++|...+. + .+..+++|+.|+++
T Consensus 105 l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~-~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITK-L--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCC-C--CCTTCTTCCEEECC
T ss_pred CCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccc-c--ccccCCcCCEEECC
Confidence 356777777777432 1122233331 1 34444455555554432221 2 24455666666666
Q ss_pred CCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 87 CGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
+|.+..+| +..+++|+.|++++|++.+.. ++.+++|++|++++|.+++.+ +..+++|+.|++++|++.+
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC
T ss_pred CCccceec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCCcCCC
Confidence 66555554 556677777777777765542 667778888888888887754 4677888888888888887
Q ss_pred CCCcccccc
Q 048040 167 INPSFICGW 175 (178)
Q Consensus 167 ~~~~~~~~l 175 (178)
..+..+..+
T Consensus 248 ~~~~~l~~L 256 (457)
T 3bz5_A 248 LDVSTLSKL 256 (457)
T ss_dssp CCCTTCTTC
T ss_pred cCHHHCCCC
Confidence 766555544
No 120
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=5.1e-13 Score=92.16 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=89.1
Q ss_pred eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCC
Q 048040 23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFS 101 (178)
Q Consensus 23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~ 101 (178)
.+.++++++ .+.. +|..+ ..+|+.|++++|.++.. .+..|..+++|++|++++|.+..+|. .+..++
T Consensus 11 ~~~l~~s~n--------~l~~-ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGK--------SLAS-VPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTS--------CCSS-CCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEEeCCC--------CcCc-cCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 578999999 5553 44433 37899999999999996 68889999999999999998888766 568999
Q ss_pred CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc
Q 048040 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR 142 (178)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 142 (178)
+|+.|++++|++.+.+. ..+..+++|++|++++|.++...
T Consensus 79 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999999876553 34788999999999999998664
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=7.5e-13 Score=91.28 Aligned_cols=99 Identities=23% Similarity=0.294 Sum_probs=70.9
Q ss_pred eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCC
Q 048040 9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSK 79 (178)
Q Consensus 9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 79 (178)
|.|+.+.|... ...++.|++++| .+.+..|..|..+.+|++|++++|.++.. .+..|..+++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N--------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~ 79 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDN--------QITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQ 79 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSS--------CCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTT
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCC--------cCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCC
Confidence 45666666532 255777888777 67766677777888888888888888774 4455677888
Q ss_pred CcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccC
Q 048040 80 LRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSV 116 (178)
Q Consensus 80 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 116 (178)
|++|++++|.+..++. .+..+++|+.|++++|++...
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8888888887666655 477788888888888876444
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=3e-13 Score=103.38 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=96.7
Q ss_pred eeeeeeeecCC---------CCCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCch-hhhcccC
Q 048040 9 CKWRGVHCRNT---------TGHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIP-EFIGSLS 78 (178)
Q Consensus 9 c~~~~~~~~~~---------~~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~l~~l~ 78 (178)
|.+..|.|... ...+++|++++| .++...+..|.++++|++|++++|.+... ++ ..|..++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N--------~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~ 79 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT--------KLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLP 79 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESC--------CCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCC--------cCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcch
Confidence 67888888642 256899999999 66644445678888888888888887653 33 3456666
Q ss_pred CCcEE-eccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchH------------------------HHhcc-CCCCEE
Q 048040 79 KLRYL-NLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLE------------------------WLSHL-SSLRHL 131 (178)
Q Consensus 79 ~L~~L-~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~~l-~~L~~L 131 (178)
.++.+ .+.+|.+..+ |..+..+++|+.|++++|++...+... .+..+ ..+++|
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 66543 3444555555 345667777777777776653221100 01111 235556
Q ss_pred eccCCCCCCccc---------------------H-HHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 132 DLSYINLTKSRD---------------------W-FQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 132 ~l~~n~i~~~~~---------------------~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
++++|.|+..+. + ...+.++++|++|++++|+++..++..+.++
T Consensus 160 ~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L 225 (350)
T 4ay9_X 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225 (350)
T ss_dssp ECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred ccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence 666655543321 0 2345677788888888888887666655554
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=3.3e-13 Score=103.52 Aligned_cols=129 Identities=22% Similarity=0.220 Sum_probs=77.2
Q ss_pred cccccchhh----hhCC-CCCCEEEccCCCCCCCCchhhhc----c-cCCCcEEeccCCCCC-----ccchhccCCC-CC
Q 048040 40 FLKGTISPA----LLKL-HDLRHLDLSNNDFGGSPIPEFIG----S-LSKLRYLNLSCGAPL-----EVPRTLRNFS-GL 103 (178)
Q Consensus 40 ~l~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~l~----~-l~~L~~L~l~~~~~~-----~~~~~~~~l~-~L 103 (178)
.+.+..+.. +..+ ++|+.|++++|.+++. .+..+. . ..+|++|++++|.++ .++..+..++ +|
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 555444443 3333 6777777777777664 333332 2 247777777777544 2233444554 78
Q ss_pred cEEEeeCCccccCCch---HHHhcc-CCCCEEeccCCCCCCcc--cHHHHHhc-cCCCcEEEecCCCCCCCCC
Q 048040 104 EYLNLENSHLFSVGSL---EWLSHL-SSLRHLDLSYINLTKSR--DWFQVVAK-LRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 104 ~~L~l~~n~l~~~~~~---~~~~~l-~~L~~L~l~~n~i~~~~--~~~~~~~~-l~~L~~l~l~~n~~~~~~~ 169 (178)
+.|++++|++...... ..+..+ ++|++|++++|.+++.. .++..+.. .++|++|++++|.+.+..+
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 8888888877554421 123344 47888888888877631 12345555 3588888888888877655
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=3e-13 Score=104.46 Aligned_cols=123 Identities=17% Similarity=0.212 Sum_probs=85.9
Q ss_pred hhhhCCCCCCEEEccCCCCCCCC----chhhhcccCCCcEEeccCCCC-----CccchhccCCCCCcEEEeeCCccccCC
Q 048040 47 PALLKLHDLRHLDLSNNDFGGSP----IPEFIGSLSKLRYLNLSCGAP-----LEVPRTLRNFSGLEYLNLENSHLFSVG 117 (178)
Q Consensus 47 ~~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~ 117 (178)
..+..+++|+.|++++|.++... .+..+..+++|+.|++++|.+ ..+|..+..+++|+.|++++|.+....
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 45667788888888888887311 233667788888888888866 445667778888888888888874432
Q ss_pred c---hHHH--hccCCCCEEeccCCCCCCc--ccHHHHH-hccCCCcEEEecCCCCCCCCC
Q 048040 118 S---LEWL--SHLSSLRHLDLSYINLTKS--RDWFQVV-AKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 118 ~---~~~~--~~l~~L~~L~l~~n~i~~~--~~~~~~~-~~l~~L~~l~l~~n~~~~~~~ 169 (178)
. +..+ +.+++|++|++++|.++.. ..++..+ .++++|+.|++++|++++..+
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 1 2333 2378888888888888772 1123345 567888888988888887653
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1e-12 Score=91.03 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=89.2
Q ss_pred eeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchh-ccCCC
Q 048040 23 VKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRT-LRNFS 101 (178)
Q Consensus 23 l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~l~ 101 (178)
-+.++++++ .+. .+|..+ ..+|+.|++++|.++.. .|..+..+++|++|++++|.+..+|.. +..++
T Consensus 14 ~~~l~~~~n--------~l~-~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQNI--------RLA-SVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SSEEECCSS--------CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CcEEEeCCC--------CCC-ccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 367999999 553 455444 37899999999999986 688899999999999999988888764 68999
Q ss_pred CCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcc
Q 048040 102 GLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSR 142 (178)
Q Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 142 (178)
+|+.|++++|++...+. ..+..+++|++|++++|.+...+
T Consensus 82 ~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTB
T ss_pred hhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCccccc
Confidence 99999999999876543 34788999999999999998765
No 126
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=2e-12 Score=89.51 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=49.3
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchh-ccC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRT-LRN 99 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~ 99 (178)
..++.|++++| .+.+..|..|..+++|+.|+|++|.++.. .+..+..+++|++|++++|.+..+|.. +..
T Consensus 33 ~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNN--------QITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECCSS--------CCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEeCCC--------CccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhcc
Confidence 34556666666 55555555566666666666666666653 233345666666666666655555443 555
Q ss_pred CCCCcEEEeeCCccc
Q 048040 100 FSGLEYLNLENSHLF 114 (178)
Q Consensus 100 l~~L~~L~l~~n~l~ 114 (178)
+++|+.|++++|++.
T Consensus 104 l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 104 LKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTCSEEECCSSCBC
T ss_pred ccCCCEEEeCCCCcc
Confidence 666666666666653
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=3.9e-15 Score=105.12 Aligned_cols=130 Identities=24% Similarity=0.287 Sum_probs=106.6
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCC
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNF 100 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 100 (178)
..++.|++++| .+.+ +| .+..+++|+.|++++|.++. +|..+..+++|++|++++|.+..+| .+..+
T Consensus 48 ~~L~~L~ls~n--------~l~~-l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 48 KACKHLALSTN--------NIEK-IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp TTCSEEECSEE--------EESC-CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred CCCCEEECCCC--------CCcc-cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 57889999998 6665 55 78889999999999999996 7778888899999999999777776 67888
Q ss_pred CCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCccc-------H-HHHHhccCCCcEEEecCCCCC
Q 048040 101 SGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRD-------W-FQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-------~-~~~~~~l~~L~~l~l~~n~~~ 165 (178)
++|+.|++++|++...+....+..+++|++|++++|.+.+... + ...+..+++|+.|+ ++.++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9999999999998665544568899999999999999866521 1 23478899999987 56655
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=5.8e-13 Score=108.91 Aligned_cols=86 Identities=23% Similarity=0.127 Sum_probs=52.4
Q ss_pred CCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEE
Q 048040 78 SKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTF 157 (178)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l 157 (178)
++|+.|++++|.+..+| ..+++|+.|++++|++...+. .+++|+.|++++|.++..|. .+.++++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp~---~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLPE---SLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCCG---GGGGSCTTCEE
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCCH---HHhhccccCEE
Confidence 34555555555444444 234566666666666654432 45667777777777776553 56777777777
Q ss_pred EecCCCCCCCCCccccc
Q 048040 158 VLRSCALPPINPSFICG 174 (178)
Q Consensus 158 ~l~~n~~~~~~~~~~~~ 174 (178)
++++|++++.+|..+..
T Consensus 290 ~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 290 NLEGNPLSERTLQALRE 306 (622)
T ss_dssp ECCSCCCCHHHHHHHHH
T ss_pred EecCCCCCCcCHHHHHh
Confidence 77777777666654443
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.39 E-value=2.6e-12 Score=101.53 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=60.4
Q ss_pred cccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCch
Q 048040 40 FLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSL 119 (178)
Q Consensus 40 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 119 (178)
.+.+ +| .+..+++|++|++++|.++. +|.. ..+|++|++++|.+..+| .+..+++|+.|++++|++.+.+.
T Consensus 142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~- 212 (454)
T 1jl5_A 142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD- 212 (454)
T ss_dssp CCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC-
T ss_pred CCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCC-
Confidence 4553 44 36666677777777776665 3322 235666666666555554 45666666666666666543221
Q ss_pred HHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCC
Q 048040 120 EWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPP 166 (178)
Q Consensus 120 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 166 (178)
..++|++|++++|.++..+ .++.+++|++|++++|++.+
T Consensus 213 ----~~~~L~~L~l~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 213 ----LPLSLESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp ----CCTTCCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSS
T ss_pred ----CcCcccEEECcCCcCCccc----ccCCCCCCCEEECCCCcCCc
Confidence 1134555555555555443 24455566666666665554
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=7.2e-13 Score=108.35 Aligned_cols=78 Identities=24% Similarity=0.225 Sum_probs=39.1
Q ss_pred CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEE
Q 048040 52 LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHL 131 (178)
Q Consensus 52 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (178)
+++|++|++++|.++. +|. .+++|++|++++|.+..+|. .+++|+.|++++|++...+. .+++|++|
T Consensus 80 l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L 146 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQEL 146 (622)
T ss_dssp CTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEE
T ss_pred CCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEE
Confidence 4455555555555544 232 34455555555554444433 33455555555555543321 23566666
Q ss_pred eccCCCCCCcc
Q 048040 132 DLSYINLTKSR 142 (178)
Q Consensus 132 ~l~~n~i~~~~ 142 (178)
++++|.+++.+
T Consensus 147 ~Ls~N~l~~l~ 157 (622)
T 3g06_A 147 SVSDNQLASLP 157 (622)
T ss_dssp ECCSSCCSCCC
T ss_pred ECcCCcCCCcC
Confidence 66666666554
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.36 E-value=1.2e-11 Score=97.70 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=28.1
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccchhccCCCCCcEEEeeCCcccc
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPRTLRNFSGLEYLNLENSHLFS 115 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 115 (178)
+..+++|+.|++++|.+++ +|.. ..+|++|++++|.+..+| .+..+++|+.|++++|++.+
T Consensus 191 ~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKK--LPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS--CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred ccCCCCCCEEECCCCcCCc--CCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 4444555555555554443 2211 124444555444444444 24455555555555555433
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=4e-12 Score=100.02 Aligned_cols=121 Identities=21% Similarity=0.180 Sum_probs=75.9
Q ss_pred chhhhhCCCCCCEEEccCCCCCCCCchhhhccc-----CCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCccc
Q 048040 45 ISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSL-----SKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSHLF 114 (178)
Q Consensus 45 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~ 114 (178)
++..+..+++|+.|++++|.+++. .+..+... +.|++|++++|.+.. ++..+..+++|+.|++++|++.
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 455566667777777777766542 23333322 467777777774443 2445566678888888888764
Q ss_pred cCCchHHHhc-----cCCCCEEeccCCCCCCc--ccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 115 SVGSLEWLSH-----LSSLRHLDLSYINLTKS--RDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 115 ~~~~~~~~~~-----l~~L~~L~l~~n~i~~~--~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
+.... .+.. .++|++|++++|.+++. ..++..+..+++|++|++++|++.+.
T Consensus 355 ~~~~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 355 DAGVR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cccHH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 43322 1222 56788888888887752 12345677788888888888887753
No 133
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=101.25 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=97.0
Q ss_pred CCeeEEEecCCcccccccccccccchhh-hhCCCCCCEEEccCCCCCCCCchhhhc-----ccCCCcEEeccCCCCCc--
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPA-LLKLHDLRHLDLSNNDFGGSPIPEFIG-----SLSKLRYLNLSCGAPLE-- 92 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~-- 92 (178)
..++.|++++| .+....... ...+.+|+.|+|++|.+++. ....+. ..+.|++|++++|.++.
T Consensus 101 ~~L~~L~Ls~n--------~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 101 HALDEVNLASC--------QLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SCEEEEECTTC--------CCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CCceEEEecCC--------CCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 46677777777 454332222 22345788899999988763 333332 35779999999986653
Q ss_pred ---cchhccCCCCCcEEEeeCCccccCCc---hHHHhccCCCCEEeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCC
Q 048040 93 ---VPRTLRNFSGLEYLNLENSHLFSVGS---LEWLSHLSSLRHLDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCAL 164 (178)
Q Consensus 93 ---~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~ 164 (178)
++..+...++|++|++++|.+...+. ...+...++|++|++++|.|++.. .++..+...+.|++|++++|.+
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 34455678889999999998754332 233566778999999999987653 3445566778999999999988
Q ss_pred CCCCCccc
Q 048040 165 PPINPSFI 172 (178)
Q Consensus 165 ~~~~~~~~ 172 (178)
.......+
T Consensus 252 ~~~g~~~L 259 (372)
T 3un9_A 252 SSEGRQVL 259 (372)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 75444443
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.25 E-value=1.2e-11 Score=97.32 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=20.2
Q ss_pred HhccCCCCEEeccCCCCCCccc--HHHHHh-ccCCCcEEEecCCCCCC
Q 048040 122 LSHLSSLRHLDLSYINLTKSRD--WFQVVA-KLRSLKTFVLRSCALPP 166 (178)
Q Consensus 122 ~~~l~~L~~L~l~~n~i~~~~~--~~~~~~-~l~~L~~l~l~~n~~~~ 166 (178)
+..+++|++|++++|.+++... +...+. ..++|++|++++|.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 3444555555555555543310 011111 13355666666655554
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=3.7e-11 Score=91.41 Aligned_cols=97 Identities=25% Similarity=0.162 Sum_probs=74.1
Q ss_pred ccccchhhhhCCCCCCEEEccC-CCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCc
Q 048040 41 LKGTISPALLKLHDLRHLDLSN-NDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGS 118 (178)
Q Consensus 41 l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 118 (178)
+. .+|. +..+.+|+.|+|++ |.++.. .+..|..+++|+.|+|++|.+..++ ..|..+++|+.|++++|++.+.+.
T Consensus 21 l~-~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 21 LD-SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CT-TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CC-ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 44 3666 78888899999986 888875 5577888999999999998776664 467889999999999999866542
Q ss_pred hHHHhccCCCCEEeccCCCCCCcc
Q 048040 119 LEWLSHLSSLRHLDLSYINLTKSR 142 (178)
Q Consensus 119 ~~~~~~l~~L~~L~l~~n~i~~~~ 142 (178)
..+..++ |+.|++.+|.+....
T Consensus 98 -~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 98 -KTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp -TTTCSCC-CCEEECCSSCCCCCG
T ss_pred -HHcccCC-ceEEEeeCCCccCCC
Confidence 2234444 899999999887654
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=94.79 Aligned_cols=139 Identities=18% Similarity=0.186 Sum_probs=101.1
Q ss_pred CCeeEEEecCCcccccccccccccchh----hhhC-CCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISP----ALLK-LHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP- 94 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~----~l~~-l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~- 94 (178)
..++.|++++| .+...... .+.. ..+|+.|+|++|.+++.........+.+|+.|++++|.++...
T Consensus 72 ~~L~~L~Ls~n--------~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 72 SSLRQLNLAGV--------RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp TTCCEEECTTS--------CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred hhCCEEEecCC--------CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 56899999999 55543322 2332 3699999999999986412333445678999999999765432
Q ss_pred hh----c-cCCCCCcEEEeeCCccccCC---chHHHhccCCCCEEeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCC
Q 048040 95 RT----L-RNFSGLEYLNLENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCAL 164 (178)
Q Consensus 95 ~~----~-~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~ 164 (178)
.. + ...++|+.|++++|.+.... ....+..+++|++|++++|.+++.. .+...+...+.|++|++++|.+
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 22 2 35688999999999985533 2233567889999999999997653 3355677888999999999998
Q ss_pred CCC
Q 048040 165 PPI 167 (178)
Q Consensus 165 ~~~ 167 (178)
+..
T Consensus 224 ~~~ 226 (372)
T 3un9_A 224 GDT 226 (372)
T ss_dssp CHH
T ss_pred CHH
Confidence 753
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=1.5e-10 Score=88.43 Aligned_cols=142 Identities=20% Similarity=0.107 Sum_probs=91.3
Q ss_pred CCeeEEEecCCccc------------------ccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccC----
Q 048040 21 GHVKVLNLRTSDYE------------------FARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLS---- 78 (178)
Q Consensus 21 ~~l~~l~l~~~~~~------------------~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~---- 78 (178)
..++.|++++|.+. ....|.+....|..|..+++|+.|++++|.+... .+..+....
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVL 132 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC-CCCTTCCBSSCEE
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccC-Cchhhcccchhhh
Confidence 67999999999762 1234556655567788899999999999988753 222222222
Q ss_pred ----------------------CCcEEeccCCCCCccchhccCCCCCcEEEeeC-CccccCCchHHHhccCCCCEEeccC
Q 048040 79 ----------------------KLRYLNLSCGAPLEVPRTLRNFSGLEYLNLEN-SHLFSVGSLEWLSHLSSLRHLDLSY 135 (178)
Q Consensus 79 ----------------------~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (178)
.++.|++++|.+..++.......+++.+++.+ |.+...+ ...+..+++|++|++++
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISR 211 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTT
T ss_pred hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCC
Confidence 34455555555555555444455666666654 3343333 23468889999999999
Q ss_pred CCCCCcccHHHHHhccCCCcEEEecCCCCCCCCC
Q 048040 136 INLTKSRDWFQVVAKLRSLKTFVLRSCALPPINP 169 (178)
Q Consensus 136 n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 169 (178)
|.++..|. ..+..|+.|.+.++.--+.+|
T Consensus 212 N~l~~lp~-----~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 212 TRIHSLPS-----YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SCCCCCCS-----SSCTTCCEEECTTCTTCCCCC
T ss_pred CCcCccCh-----hhhccchHhhhccCCCcCcCC
Confidence 99999874 345666777766554333455
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=88.77 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=85.6
Q ss_pred ceeeeeeeecCC-----------CCCeeEEEecC-CcccccccccccccchhhhhCCCCCCEEEccCCCCCCCCchhhhc
Q 048040 8 CCKWRGVHCRNT-----------TGHVKVLNLRT-SDYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIG 75 (178)
Q Consensus 8 ~c~~~~~~~~~~-----------~~~l~~l~l~~-~~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~ 75 (178)
.|.|..+.|... ...++.|+|++ | .+.+..+..|.++.+|+.|+|++|.+++. .+..|.
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n--------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~ 77 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQ--------HLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFH 77 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCS--------SCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGG
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCC--------CCCCcChhHhccccCCCEEECCCCcccee-CHHHhc
Confidence 378888888764 13488999986 8 78877778899999999999999999986 677889
Q ss_pred ccCCCcEEeccCCCCCccchh-ccCCCCCcEEEeeCCccccCCchHHHh
Q 048040 76 SLSKLRYLNLSCGAPLEVPRT-LRNFSGLEYLNLENSHLFSVGSLEWLS 123 (178)
Q Consensus 76 ~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (178)
.+++|+.|+|++|.+..+|.. +..+. |+.|++.+|.+.-......+.
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~ 125 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQ 125 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHH
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHH
Confidence 999999999999988888764 44444 999999999986555444333
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.09 E-value=1.1e-10 Score=94.43 Aligned_cols=141 Identities=13% Similarity=0.125 Sum_probs=96.7
Q ss_pred CCeeEEEecCCcccccccccccccchhhhhC-CCCCCEEEcc----CCCCCCCC----chhhhcccCCCcEEeccCCC--
Q 048040 21 GHVKVLNLRTSDYEFARRKFLKGTISPALLK-LHDLRHLDLS----NNDFGGSP----IPEFIGSLSKLRYLNLSCGA-- 89 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l~~~~~~~l~~-l~~L~~L~l~----~n~~~~~~----~~~~l~~l~~L~~L~l~~~~-- 89 (178)
..++.|+++.+ .+++..+..+.. +++|+.|+++ .|.+++.+ ++..+..+++|+.|+++.|.
T Consensus 378 ~~L~~L~l~~~--------~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 378 QELEYMAVYVS--------DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449 (592)
T ss_dssp TTCSEEEEEES--------CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred ccCeEEEeecC--------CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence 34555555444 566655555554 7888888886 55666521 23346678889999886542
Q ss_pred CC-ccchhc-cCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCC
Q 048040 90 PL-EVPRTL-RNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 90 ~~-~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
+. ..+..+ ..+++|+.|++++|++.+......+..+++|+.|++++|.+++.. ....+..+++|++|++++|+++..
T Consensus 450 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA-IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH-HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH-HHHHHHhcCccCeeECcCCcCCHH
Confidence 22 223333 347889999999999765555555688899999999999986542 244667899999999999998876
Q ss_pred CCc
Q 048040 168 NPS 170 (178)
Q Consensus 168 ~~~ 170 (178)
...
T Consensus 529 ~~~ 531 (592)
T 3ogk_B 529 GQD 531 (592)
T ss_dssp CTT
T ss_pred HHH
Confidence 443
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.93 E-value=1.8e-09 Score=87.31 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=7.7
Q ss_pred hCCCCCCEEEccCCCCC
Q 048040 50 LKLHDLRHLDLSNNDFG 66 (178)
Q Consensus 50 ~~l~~L~~L~l~~n~~~ 66 (178)
..+++|+.|++++|.++
T Consensus 189 ~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp HHCCCCCEEECTTCCCS
T ss_pred hcCCCccEEEeeccCCC
Confidence 33444444444444443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.2e-09 Score=82.55 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=49.6
Q ss_pred cCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhccCCCC-EEeccCCCCCCcccHHHHHhccCCC
Q 048040 77 LSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLR-HLDLSYINLTKSRDWFQVVAKLRSL 154 (178)
Q Consensus 77 l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~i~~~~~~~~~~~~l~~L 154 (178)
+++|+.+++.+|.+..+|. .|..+.+|+.+.+..| +...+. ..+..+.+|+ .+++.. .++..+ ...+.++++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~--~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIE--FGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEEC--TTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEc--hhhhhCCccC
Confidence 3445555555544444433 4555555555555554 333321 2255555666 666655 444443 2355666666
Q ss_pred cEEEecCCCCCCCCCcccccc
Q 048040 155 KTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 155 ~~l~l~~n~~~~~~~~~~~~l 175 (178)
+.+++.+|.+..+.+.+|.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTT
T ss_pred CEEEeCCCccCccchhhhcCC
Confidence 666666666666555565554
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=1.4e-09 Score=75.79 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=88.2
Q ss_pred cccchhhhhCCCCCCEEEccCC-CCCCCC---chhhhcccCCCcEEeccCCCCCc-----cchhccCCCCCcEEEeeCCc
Q 048040 42 KGTISPALLKLHDLRHLDLSNN-DFGGSP---IPEFIGSLSKLRYLNLSCGAPLE-----VPRTLRNFSGLEYLNLENSH 112 (178)
Q Consensus 42 ~~~~~~~l~~l~~L~~L~l~~n-~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~n~ 112 (178)
...+...+...+.|+.|+|++| .+.+.. +...+...+.|++|++++|.++. +...+...+.|++|++++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3345566777888999999998 887521 34455667889999999886653 23445556789999999998
Q ss_pred cccCCc---hHHHhccCCCCEEec--cCCCCCCcc--cHHHHHhccCCCcEEEecCCCCC
Q 048040 113 LFSVGS---LEWLSHLSSLRHLDL--SYINLTKSR--DWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 113 l~~~~~---~~~~~~l~~L~~L~l--~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+...+. ...+...++|++|++ ++|.|.+.. .+...+...+.|++|++++|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 754432 233555678999999 889887762 34556677789999999988764
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.85 E-value=2.2e-09 Score=86.84 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=75.8
Q ss_pred cccccchhhhh-CCCCCCEEEcc--C----CCCCCCC----chhhhcccCCCcEEeccCCCCCccchhccC-CCCCcEEE
Q 048040 40 FLKGTISPALL-KLHDLRHLDLS--N----NDFGGSP----IPEFIGSLSKLRYLNLSCGAPLEVPRTLRN-FSGLEYLN 107 (178)
Q Consensus 40 ~l~~~~~~~l~-~l~~L~~L~l~--~----n~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-l~~L~~L~ 107 (178)
.+++.....+. .+++|+.|+++ + +.++..+ ++..+..+++|+.|+++++.....+..+.. +++|+.|+
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEee
Confidence 44444334343 46777888777 3 4455321 222355667788888866322222333333 67788888
Q ss_pred eeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCC
Q 048040 108 LENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALP 165 (178)
Q Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~ 165 (178)
+++|.+.+.........+++|+.|++++|.+++.. ....+..+++|+.|++++|+++
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA-LLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH-HHHTGGGGGGSSEEEEESSCCB
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH-HHHHHHhCCCCCEEeeeCCCCC
Confidence 88888644433333366788888888888884432 1234456788888888888774
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=7.7e-09 Score=78.17 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=38.6
Q ss_pred CCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCc-EEEecCCCCCCCCCcccccc
Q 048040 100 FSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLK-TFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~~~~~~~l 175 (178)
+++|+.+++.+|++...+. ..+..+.+|+.+++..| ++..+ ...+.++.+|+ .+.+.+ .+..+.+.+|.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD-FTFAQKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECT-TTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecH-hhhhCCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 4556666666665544432 22555666666666665 44443 23555666666 666655 4454555555443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.73 E-value=1.2e-08 Score=82.50 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=30.9
Q ss_pred hCCCCCCEEEccCCCCCCCCchhhhc-ccCCCcEEeccCC-CCCc--cchhccCCCCCcEEEeeCCcc
Q 048040 50 LKLHDLRHLDLSNNDFGGSPIPEFIG-SLSKLRYLNLSCG-APLE--VPRTLRNFSGLEYLNLENSHL 113 (178)
Q Consensus 50 ~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~~-~~~~--~~~~~~~l~~L~~L~l~~n~l 113 (178)
..+++|+.|++++|.+++. .+..+. .+++|++|++.+| .++. ++.....+++|+.|++++|.+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i 168 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDV 168 (594)
T ss_dssp HHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEE
T ss_pred HhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCcc
Confidence 3455566666666555543 333332 4555666655555 3322 222233455555555555554
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=6.4e-08 Score=74.28 Aligned_cols=114 Identities=23% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCCCCEEEccCCCCCCCCchhhhc--ccCCCcEEeccCC---CCC-----ccchhc--cCCCCCcEEEeeCCccccCCch
Q 048040 52 LHDLRHLDLSNNDFGGSPIPEFIG--SLSKLRYLNLSCG---APL-----EVPRTL--RNFSGLEYLNLENSHLFSVGSL 119 (178)
Q Consensus 52 l~~L~~L~l~~n~~~~~~~~~~l~--~l~~L~~L~l~~~---~~~-----~~~~~~--~~l~~L~~L~l~~n~l~~~~~~ 119 (178)
+.+|+.|++..+.++.. ....+. .+++|+.|+|+.+ ..+ .+...+ ..+++|+.|.+.+|.+.... .
T Consensus 192 ~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~-~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV-V 269 (362)
T ss_dssp CTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH-H
T ss_pred CCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH-H
Confidence 56777777777766542 233343 6788888887531 111 111222 24788999999988874322 1
Q ss_pred HHH---hccCCCCEEeccCCCCCCcc--cHHHHHhccCCCcEEEecCCCCCCC
Q 048040 120 EWL---SHLSSLRHLDLSYINLTKSR--DWFQVVAKLRSLKTFVLRSCALPPI 167 (178)
Q Consensus 120 ~~~---~~l~~L~~L~l~~n~i~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~ 167 (178)
..+ ..+++|++|+++.|.+.+.. .+...+..+++|+.|+++.|.+...
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 222 34778999999999887752 1222335678999999998887643
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=3.4e-08 Score=68.78 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=87.8
Q ss_pred CCCCeeEEEecCC-cccccccccccccchhhhhCCCCCCEEEccCCCCCCCC---chhhhcccCCCcEEeccCCCCCc--
Q 048040 19 TTGHVKVLNLRTS-DYEFARRKFLKGTISPALLKLHDLRHLDLSNNDFGGSP---IPEFIGSLSKLRYLNLSCGAPLE-- 92 (178)
Q Consensus 19 ~~~~l~~l~l~~~-~~~~~~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~-- 92 (178)
....+++|++++| .+..-. . ..+...+...++|++|+|++|.+.+.. +...+...+.|++|++++|.++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g---~-~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPT---L-KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHH---H-HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred cCCCCCEEEecCCCCCCHHH---H-HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4578999999998 552111 1 134456777899999999999998631 34456667899999999997664
Q ss_pred ---cchhccCCCCCcEEEe--eCCccccCC---chHHHhccCCCCEEeccCCCCCCcc
Q 048040 93 ---VPRTLRNFSGLEYLNL--ENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSR 142 (178)
Q Consensus 93 ---~~~~~~~l~~L~~L~l--~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~ 142 (178)
+...+...+.|+.|++ ++|.+.... ....+...++|++|++++|.+....
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 3456677789999999 889985443 2234566689999999999986553
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=3.8e-09 Score=77.71 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=57.8
Q ss_pred cccCCCcEEeccCCCCCcc---chhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc-c---c-HHH
Q 048040 75 GSLSKLRYLNLSCGAPLEV---PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS-R---D-WFQ 146 (178)
Q Consensus 75 ~~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~---~-~~~ 146 (178)
..++.|+.|++++|.+..+ |..+..+++|+.|++++|++.+......+..+ +|++|++++|.+.+. + . ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4577888888888866554 34556788888888888888665333334434 888899998888752 1 1 124
Q ss_pred HHhccCCCcEEE
Q 048040 147 VVAKLRSLKTFV 158 (178)
Q Consensus 147 ~~~~l~~L~~l~ 158 (178)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 567888888876
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=2e-07 Score=64.17 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=61.1
Q ss_pred CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCC-CCCcc-chhccCC----CCCcEEEeeCCc-cccCCchHHHhcc
Q 048040 53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCG-APLEV-PRTLRNF----SGLEYLNLENSH-LFSVGSLEWLSHL 125 (178)
Q Consensus 53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~~l 125 (178)
-+|+.|+++++.+++. ....+..+++|++|++++| .++.. -..+..+ ++|+.|++++|. ++..+ ...+..+
T Consensus 61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence 3677778888777764 4455677777888887777 44432 2234443 357788888776 43333 3446677
Q ss_pred CCCCEEeccCCC-CCCcccHHH-HHhccCCCc
Q 048040 126 SSLRHLDLSYIN-LTKSRDWFQ-VVAKLRSLK 155 (178)
Q Consensus 126 ~~L~~L~l~~n~-i~~~~~~~~-~~~~l~~L~ 155 (178)
++|++|+++++. +++...... .-..+|.++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 788888888775 555421112 223556654
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=3.6e-07 Score=67.14 Aligned_cols=84 Identities=23% Similarity=0.229 Sum_probs=63.9
Q ss_pred hhCCCCCCEEEccCCCCCCCC-chhhhcccCCCcEEeccCCCCCccc--hhccCCCCCcEEEeeCCccccC-C-----ch
Q 048040 49 LLKLHDLRHLDLSNNDFGGSP-IPEFIGSLSKLRYLNLSCGAPLEVP--RTLRNFSGLEYLNLENSHLFSV-G-----SL 119 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~-----~~ 119 (178)
...+++|+.|+|++|.+++.+ ++..+..+++|+.|+|++|.+..+. ..+..+ +|+.|++.+|.+.+. + ..
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 356889999999999999831 4567789999999999999776652 234444 899999999998542 1 12
Q ss_pred HHHhccCCCCEEec
Q 048040 120 EWLSHLSSLRHLDL 133 (178)
Q Consensus 120 ~~~~~l~~L~~L~l 133 (178)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34788999998863
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=6.8e-07 Score=61.55 Aligned_cols=85 Identities=19% Similarity=0.283 Sum_probs=66.2
Q ss_pred cCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhcc----CCCCEEeccCCC-CCCcccHHHHHhc
Q 048040 77 LSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHL----SSLRHLDLSYIN-LTKSRDWFQVVAK 150 (178)
Q Consensus 77 l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~~~ 150 (178)
-..|+.|++++|.+... -..+..+++|+.|++++|...+......+..+ ++|++|+++++. |++.. ...++.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--IIALHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHGGG
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHHhc
Confidence 35799999999965443 34678999999999999974344444556654 479999999985 87764 457889
Q ss_pred cCCCcEEEecCCC
Q 048040 151 LRSLKTFVLRSCA 163 (178)
Q Consensus 151 l~~L~~l~l~~n~ 163 (178)
+++|+.|+++++.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 9999999999985
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=4.1e-06 Score=64.25 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=87.5
Q ss_pred CCeeEEEecCCcccccccccc-cccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhc-
Q 048040 21 GHVKVLNLRTSDYEFARRKFL-KGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTL- 97 (178)
Q Consensus 21 ~~l~~l~l~~~~~~~~~~~~l-~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~- 97 (178)
.+++.|.+...........-+ .+.+...+..+++|+.|.+++|.-.. ++. + .+++|+.|++..+.+..- ...+
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 578888876653211000001 23466677888999999998873211 333 3 378899999987754322 2233
Q ss_pred -cCCCCCcEEEeeCC--ccccCCch----HHH--hccCCCCEEeccCCCCCCcccHHHHH---hccCCCcEEEecCCCCC
Q 048040 98 -RNFSGLEYLNLENS--HLFSVGSL----EWL--SHLSSLRHLDLSYINLTKSRDWFQVV---AKLRSLKTFVLRSCALP 165 (178)
Q Consensus 98 -~~l~~L~~L~l~~n--~l~~~~~~----~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~---~~l~~L~~l~l~~n~~~ 165 (178)
..+++|+.|++..+ ...+.... ..+ +.+++|++|++++|.+.+.. ...+ ..+++|++|+++.|.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~--~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV--VEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH--HHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH--HHHHHhCccCCCCCEEECCCCCCC
Confidence 37899999998632 21111101 112 35789999999999987642 1233 35789999999999887
Q ss_pred CC
Q 048040 166 PI 167 (178)
Q Consensus 166 ~~ 167 (178)
..
T Consensus 293 d~ 294 (362)
T 2ra8_A 293 DE 294 (362)
T ss_dssp HH
T ss_pred hH
Confidence 63
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.23 E-value=2.8e-06 Score=66.00 Aligned_cols=116 Identities=12% Similarity=0.152 Sum_probs=73.4
Q ss_pred CCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCC-----cc-chhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040 53 HDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPL-----EV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS 126 (178)
Q Consensus 53 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (178)
.+|+.+.+ .+.++.. ....|..+.+|+.+.+.++... .+ +..|..+++|+.+.+.. .+...+. ..+..+.
T Consensus 248 ~~L~~i~l-p~~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~-~aF~~c~ 323 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ-GLLGGNR 323 (401)
T ss_dssp CCCSEEEE-ETTCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-TTTTTCC
T ss_pred CCccEEEe-CCCccEE-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-hhhcCCC
Confidence 45666665 2334442 3456777777888877766433 23 34677777888888773 3444432 3367778
Q ss_pred CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccccc
Q 048040 127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGWE 176 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~ 176 (178)
+|+.+.+..+ ++... ...+.++ +|+.+.+.+|.+....+..|.+++
T Consensus 324 ~L~~l~lp~~-l~~I~--~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 324 KVTQLTIPAN-VTQIN--FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp SCCEEEECTT-CCEEC--TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred CccEEEECcc-ccEEc--HHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 8888888554 55443 2356677 888888888877776666666553
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.20 E-value=6.8e-06 Score=63.83 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=87.7
Q ss_pred CCCeeEEEecCCcccccccccc--------------cccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040 20 TGHVKVLNLRTSDYEFARRKFL--------------KGTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL 85 (178)
Q Consensus 20 ~~~l~~l~l~~~~~~~~~~~~l--------------~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 85 (178)
+..++.++++++.+..+....| ...-...|.++.+|+.+.+..+ ++.. ....|.. ..|+.+.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I-~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTI-GQEAFRE-SGITTVKL 255 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEE-CTTTTTT-CCCSEEEE
T ss_pred cccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCc-ccccccc-CCccEEEe
Confidence 3567788887775543322221 1112234555666666666553 3332 2333444 56666666
Q ss_pred cCCCCCcc-chhccCCCCCcEEEeeCCccc-----cCCchHHHhccCCCCEEeccCCCCCCcccHHHHHhccCCCcEEEe
Q 048040 86 SCGAPLEV-PRTLRNFSGLEYLNLENSHLF-----SVGSLEWLSHLSSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVL 159 (178)
Q Consensus 86 ~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l 159 (178)
..+ +..+ ...|..+++|+.+.+.++.+. ..+ ...+..+++|+.+.+. +.++..+ ...+.++.+|+.+.+
T Consensus 256 p~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~-~~aF~~c~~L~~l~l~-~~i~~I~--~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 256 PNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH-PYCLEGCPKLARFEIP-ESIRILG--QGLLGGNRKVTQLTI 330 (401)
T ss_dssp ETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC-TTTTTTCTTCCEECCC-TTCCEEC--TTTTTTCCSCCEEEE
T ss_pred CCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEEC-HHHhhCCccCCeEEeC-CceEEEh--hhhhcCCCCccEEEE
Confidence 433 3334 346778888999888877653 122 2347788889999888 4466664 247788889999998
Q ss_pred cCCCCCCCCCcccccc
Q 048040 160 RSCALPPINPSFICGW 175 (178)
Q Consensus 160 ~~n~~~~~~~~~~~~l 175 (178)
..+ ++.+...+|.++
T Consensus 331 p~~-l~~I~~~aF~~~ 345 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT 345 (401)
T ss_dssp CTT-CCEECTTSSSSS
T ss_pred Ccc-ccEEcHHhCCCC
Confidence 655 565666666654
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=7.4e-05 Score=52.27 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=74.3
Q ss_pred cchhhhhCCCCCCEEEccCC-CCCCC---CchhhhcccCCCcEEeccCCCCCcc-----chhccCCCCCcEEEeeCCccc
Q 048040 44 TISPALLKLHDLRHLDLSNN-DFGGS---PIPEFIGSLSKLRYLNLSCGAPLEV-----PRTLRNFSGLEYLNLENSHLF 114 (178)
Q Consensus 44 ~~~~~l~~l~~L~~L~l~~n-~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~l~~n~l~ 114 (178)
.+...+..-..|+.|+|++| .+.+. .+...+..-+.|+.|+|++|.++.. .+.+..=..|++|++++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34445566778888888875 66542 0344555667788888888866532 233334467888888888874
Q ss_pred cCCchHH---HhccCCCCEEeccCC---CCCCc--ccHHHHHhccCCCcEEEecCCC
Q 048040 115 SVGSLEW---LSHLSSLRHLDLSYI---NLTKS--RDWFQVVAKLRSLKTFVLRSCA 163 (178)
Q Consensus 115 ~~~~~~~---~~~l~~L~~L~l~~n---~i~~~--~~~~~~~~~l~~L~~l~l~~n~ 163 (178)
..+.... +..-+.|++|++++| .+... ..+...+..-+.|+.|+++.|.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4433222 233346888888765 33332 2345566777888888887654
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.0011 Score=50.60 Aligned_cols=119 Identities=16% Similarity=0.184 Sum_probs=72.8
Q ss_pred hhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040 48 ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS 126 (178)
Q Consensus 48 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (178)
.+.+...|+.+.+..+ ++.. ....+.....|+.+.+..+ +..++ ..+..+.+|+.+.+..+.+...+. ..+..+.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP-RVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT-TTTTTCT
T ss_pred cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehh-hhhcCCC
Confidence 4556667777777654 3332 3445666777777777554 33333 366777888888887776644432 3367778
Q ss_pred CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCccccc
Q 048040 127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICG 174 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 174 (178)
+|+.+.+..+ ++.... ..+.++.+|+.+.+..+ ++.+...+|.+
T Consensus 311 ~L~~i~lp~~-l~~I~~--~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQV--YAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TCCEEECCTT-CCEECT--TTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred CCCEEEcCcc-ccEEHH--HHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 8888888654 444432 36677778887777544 44444455544
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.0022 Score=44.74 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=67.1
Q ss_pred hhhcccCCCcEEeccCC-CCCc-----cchhccCCCCCcEEEeeCCccccCC---chHHHhccCCCCEEeccCCCCCCcc
Q 048040 72 EFIGSLSKLRYLNLSCG-APLE-----VPRTLRNFSGLEYLNLENSHLFSVG---SLEWLSHLSSLRHLDLSYINLTKSR 142 (178)
Q Consensus 72 ~~l~~l~~L~~L~l~~~-~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~i~~~~ 142 (178)
..+..-+.|+.|+++++ .++. +.+.+..-..|+.|++++|++.... ....+..-+.|++|+|+.|.|.+..
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33445678999999985 6653 2345666678999999999984332 2233555678999999999998773
Q ss_pred --cHHHHHhccCCCcEEEecCCC
Q 048040 143 --DWFQVVAKLRSLKTFVLRSCA 163 (178)
Q Consensus 143 --~~~~~~~~l~~L~~l~l~~n~ 163 (178)
.+...+...+.|++|++++|.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHhhCCceeEEECCCCc
Confidence 345566677789999998653
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.95 E-value=0.0012 Score=42.86 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=44.7
Q ss_pred cEEeccCCCCC--ccchhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCCCCCCc
Q 048040 81 RYLNLSCGAPL--EVPRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYINLTKS 141 (178)
Q Consensus 81 ~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 141 (178)
..++.+++.+. .+|..+. .+++.|++++|++..++. ..+..+++|+.|+|.+|.+.-.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeecc
Confidence 36777777666 7776432 469999999999977653 4478889999999999998754
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.58 E-value=0.0052 Score=47.22 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=24.2
Q ss_pred hhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCCCCEEeccCC
Q 048040 73 FIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSSLRHLDLSYI 136 (178)
Q Consensus 73 ~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (178)
.|..+.+|+.+.+..+ +..+. .+|..+.+|+.+.+..+ ++..+. ..+..+.+|+.+++.++
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG-GGGTTCTTCCEEEESSC
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH-hHhhCCCCCCEEEECCc
Confidence 3444444444444332 22221 23444444554444322 222221 22444444555444443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.52 E-value=0.011 Score=45.43 Aligned_cols=109 Identities=10% Similarity=0.122 Sum_probs=77.5
Q ss_pred hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccch-hccCCCCCcEEEeeCCccccCCchHHHhcc
Q 048040 47 PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVPR-TLRNFSGLEYLNLENSHLFSVGSLEWLSHL 125 (178)
Q Consensus 47 ~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (178)
.+|.+...|+.+.+..+...- ....|..+..|+.+.+... +..++. .|..+.+|+.+.+..+ ++..+. ..+..+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C 333 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGC 333 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTC
T ss_pred ceeeecccccEEeccccccee--cCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCC
Confidence 356777888888886654432 3456778888999988643 444544 7888999999999764 333332 347888
Q ss_pred CCCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCC
Q 048040 126 SSLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCA 163 (178)
Q Consensus 126 ~~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~ 163 (178)
.+|+.+.+..+ ++.... ..+.++.+|+.+.+.++.
T Consensus 334 ~~L~~i~ip~s-v~~I~~--~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPE--SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEECTT-CCBCCG--GGGTTCTTCCEEEESSCH
T ss_pred CCCCEEEECcc-cCEEhH--hHhhCCCCCCEEEECCce
Confidence 99999999754 555542 478899999999998764
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.38 E-value=0.0068 Score=39.29 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=37.8
Q ss_pred eEEEecCCccccccccccc-ccchhhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCC
Q 048040 24 KVLNLRTSDYEFARRKFLK-GTISPALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAP 90 (178)
Q Consensus 24 ~~l~l~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~ 90 (178)
..++.+++ .++ ..+|..+ ..+|+.|+|++|.|+.. .+..|..+++|+.|+|.+|.+
T Consensus 11 ~~v~Cs~~--------~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRR--------GLTWASLPTAF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSS--------CCCTTTSCSCC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCC--------CCccccCCCCC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence 36777777 444 2344322 23678888888888875 456677788888888888744
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.99 E-value=0.017 Score=44.34 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=61.5
Q ss_pred hhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCccc-hhccCCCCCcEEEeeCCccccCCchHHHhccCC
Q 048040 49 LLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEVP-RTLRNFSGLEYLNLENSHLFSVGSLEWLSHLSS 127 (178)
Q Consensus 49 l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 127 (178)
+.....++.+......+. ...+..+.+|+.+.+..+ +..++ .+|..+.+|+.+.+..+ +...+. ..+..+.+
T Consensus 272 F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~ 344 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTS 344 (394)
T ss_dssp TTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTT
T ss_pred cccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCC
Confidence 344444444444433322 224556667777777554 33333 36777788888887643 333332 33677788
Q ss_pred CCEEeccCCCCCCcccHHHHHhccCCCcEEEecCC
Q 048040 128 LRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSC 162 (178)
Q Consensus 128 L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n 162 (178)
|+.+.+..+ ++..+ ...+.++.+|+.+.+..+
T Consensus 345 L~~i~lp~~-l~~I~--~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 345 LSNINFPLS-LRKIG--ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCTT-CCEEC--TTTBTTCTTCCEEEEEGG
T ss_pred CCEEEECcc-ccEeh--HHHhhCCCCCCEEEECCC
Confidence 888888765 55543 236777888888887654
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.96 E-value=0.015 Score=44.56 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=18.2
Q ss_pred hhhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEec
Q 048040 47 PALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNL 85 (178)
Q Consensus 47 ~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 85 (178)
.+|.+..+|+.+.+..+ ++.. ....|..+..|+.+.+
T Consensus 88 ~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILL 124 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCC
T ss_pred hHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcc
Confidence 34566666776666543 3322 2334444445544433
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.91 E-value=0.033 Score=42.36 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=79.9
Q ss_pred hhhCCCCCCEEEccCCCCCCCCchhhhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeCCccccCCchHHHhccC
Q 048040 48 ALLKLHDLRHLDLSNNDFGGSPIPEFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLENSHLFSVGSLEWLSHLS 126 (178)
Q Consensus 48 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 126 (178)
.+.....|+.+.+..+ +... ....+.....|+.+.+..+ +..+ ...+..+..|+.+.+..+ +...+. ..+..+.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~-~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY-LLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT-TTTTTCT
T ss_pred ccccccccceeeeccc-eeEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc-ccccccc
Confidence 3445566666666543 2222 3455667788888888665 3333 346778888999988654 333332 3378889
Q ss_pred CCCEEeccCCCCCCcccHHHHHhccCCCcEEEecCCCCCCCCCcccccc
Q 048040 127 SLRHLDLSYINLTKSRDWFQVVAKLRSLKTFVLRSCALPPINPSFICGW 175 (178)
Q Consensus 127 ~L~~L~l~~n~i~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l 175 (178)
+|+.+.+..+.++..+. ..+.++.+|+.+.+.++ ++.+...+|.++
T Consensus 287 ~L~~i~l~~~~i~~I~~--~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEP--RVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TCCEEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccccccccccccceehh--hhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 99999999988877753 47888999999999755 555555666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.28 E-value=48 Score=19.77 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=17.7
Q ss_pred hhhcccCCCcEEeccCCCCCcc-chhccCCCCCcEEEeeC
Q 048040 72 EFIGSLSKLRYLNLSCGAPLEV-PRTLRNFSGLEYLNLEN 110 (178)
Q Consensus 72 ~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~ 110 (178)
..|.++..|+.+.+-.+. ..+ ..+|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 344455555555554431 111 22455555555555543
Done!