BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048042
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 31 VKGLVDAGVVNIPRIFIRQPEELA--QELTTHRTK---LQLPVVDLDGIK--DNKL-EDI 82
V+ L +G+++IP+ +IR EEL ++ K Q+P +DL I+ D K+ E+
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 83 VDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVE 124
+++++ AS WG +IN+G+ +L++ + + +F VE
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE 107
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 123 VEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQ 182
+E++SN K KS+ +R + N RI A F K + P+ E++S E+P
Sbjct: 274 LEILSNGKYKSILHRGLVN-KEKVRISWAVFC--EPPKDKIVLKPLPEMVSVESP----- 325
Query: 183 FLVEEYMSKCFSRELQSKSIGLEQFKL 209
++ + F++ ++ K G EQ +L
Sbjct: 326 ---AKFPPRTFAQHIEHKLFGKEQEEL 349
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 31 VKGLVDAGVVNIPRIFIRQPEELA--QELTTHRTK---LQLPVVDLDGIK--DNKL-EDI 82
V+ L +G+++IP+ +IR EEL ++ K Q+P +DL I+ D K+ E+
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 83 VDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVE 124
+++++ AS WG +IN+G+ +L++ + + +F VE
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVE 108
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 123 VEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQ 182
+E++SN K KS+ +R + N RI A F K + P+ E++S E+P
Sbjct: 275 LEILSNGKYKSILHRGLVN-KEKVRISWAVFC--EPPKDKIVLKPLPEMVSVESP----- 326
Query: 183 FLVEEYMSKCFSRELQSKSIGLEQFKL 209
++ + F++ ++ K G EQ +L
Sbjct: 327 ---AKFPPRTFAQHIEHKLFGKEQEEL 350
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
Query: 31 VKGLVDAGVVNIPRIFIRQPEELA--QELTTHRTK---LQLPVVDLDGIK--DNKL-EDI 82
V+ L +G+++IP+ +IR EEL ++ K Q+P +DL I+ D K+ E+
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 83 VDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVE 124
+++++ AS WG +IN+G+ +L + + + +F VE
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVE 108
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 123 VEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQ 182
+E++SN K KS+ +R + N RI A F K + P+ E +S E+P
Sbjct: 275 LEILSNGKYKSILHRGLVN-KEKVRISWAVFC--EPPKDKIVLKPLPEXVSVESP----- 326
Query: 183 FLVEEYMSKCFSRELQSKSIGLEQFKL 209
++ + F++ ++ K G EQ +L
Sbjct: 327 ---AKFPPRTFAQHIEHKLFGKEQEEL 350
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 123 VEVISNDKLKSVDYRVVPNVHATARIVVACFFTGHATKAQKPFGPIKELISEENPPVYRQ 182
+EVI+N K KSV +RV+ AR +A F+ + P + E +EEN VY +
Sbjct: 221 LEVITNGKYKSVXHRVIAQKDG-ARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPK 279
Query: 183 FLVEEYMSKCFSRELQSKSIGLEQFK 208
F+ ++Y + Q+K E K
Sbjct: 280 FVFDDYXKLYAGLKFQAKEPRFEAXK 305
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 66 LPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGV 103
P++ LD + + + ++ A E WGFF+++N+G+
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGI 41
>pdb|1XX6|A Chain A, X-Ray Structure Of Clostridium Acetobutylicum Thymidine
Kinase With Adp. Northeast Structural Genomics Target
Car26.
pdb|1XX6|B Chain B, X-Ray Structure Of Clostridium Acetobutylicum Thymidine
Kinase With Adp. Northeast Structural Genomics Target
Car26
Length = 191
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 117 KFNEQDVEVISNDKLKSVDYRVVPNVHATA----RIVVACF---FTGHATKAQKPFGPIK 169
K+ E+D EVI+ D+++ D +V V+ A R++ A F G KPFGPI
Sbjct: 76 KYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDXDFRG------KPFGPIP 129
Query: 170 ELIS 173
EL +
Sbjct: 130 ELXA 133
>pdb|2K1W|A Chain A, Nmr Solution Structure Of M-Crystallin In Calcium Loaded
Form(Holo).
pdb|2K1X|A Chain A, Nmr Solution Structure Of M-Crystallin In Calcium Free
Form (Apo)
Length = 85
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 70 DLDGIKDNKLEDIVDQVRAASETWGFFKVINYG 102
D G DN L D + ++ S TW F++ INYG
Sbjct: 24 DQPGAGDN-LNDKISSIKVKSGTWRFYEYINYG 55
>pdb|3HZ2|A Chain A, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
pdb|3HZ2|B Chain B, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
pdb|3HZ2|C Chain C, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
pdb|3HZ2|D Chain D, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
Length = 84
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 70 DLDGIKDNKLEDIVDQVRAASETWGFFKVINYG 102
D G DN L D + ++ S TW F++ INYG
Sbjct: 23 DQPGAGDN-LNDKISSIKVKSGTWRFYEYINYG 54
>pdb|1YK1|A Chain A, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
pdb|1YK1|B Chain B, Structure Of Natriuretic Peptide Receptor-C Complexed With
Brain Natriuretic Peptide
Length = 479
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 112 IEGVHK-FNEQDVE--VISNDKLKSVDYR-VVPNVHATARIVVAC 152
+EGVH+ F E+ + + S D+ K +D +V N+ A+ R+V+ C
Sbjct: 216 LEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMC 260
>pdb|1YK0|A Chain A, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
pdb|1YK0|B Chain B, Structure Of Natriuretic Peptide Receptor-c Complexed With
Atrial Natriuretic Peptide
Length = 480
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 112 IEGVHK-FNEQDVE--VISNDKLKSVDYR-VVPNVHATARIVVAC 152
+EGVH+ F E+ + + S D+ K +D +V N+ A+ R+V+ C
Sbjct: 217 LEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMC 261
>pdb|1JDN|A Chain A, Crystal Structure Of Hormone Receptor
pdb|1JDP|A Chain A, Crystal Structure Of Hormone/receptor Complex
pdb|1JDP|B Chain B, Crystal Structure Of Hormone/receptor Complex
Length = 441
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 112 IEGVHK-FNEQDVE--VISNDKLKSVDYR-VVPNVHATARIVVAC 152
+EGVH+ F E+ + + S D+ K +D +V N+ A+ R+V+ C
Sbjct: 174 LEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMC 218
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 82 IVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVH 116
+ Q+ AAS GFF +N+G+++ + + + H
Sbjct: 28 VAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH 62
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 82 IVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVH 116
+ Q+ AAS GFF +N+G+++ + + + H
Sbjct: 28 VAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFH 62
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 79 LEDIVDQVRAASETWGFFKVINYGVSLNLIQEMIEGVHKFNEQDVEVISNDKLKSVDYRV 138
L D + +R T F N G LNL EM K NE +V I ++K S++ +
Sbjct: 149 LSDFKELLRTVKATGAFLGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENI 208
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 50 PEEL-AQELTTHRTKLQLPVVDLDGIKDNKLEDIVDQVRAASETWGFFKVINYGVSLNLI 108
PEE+ EL H L D ++++++ V+AA G KVI Y +S I
Sbjct: 196 PEEIRGTELLIHECTF-LDARDRRYKNHAAIDEVMESVKAA----GVKKVILYHISTRYI 250
Query: 109 QEMIEGVHKFNEQ--DVEVISNDKLK 132
+++ + K+ E+ DVE++ D K
Sbjct: 251 RQLKSVIKKYREEMPDVEILYMDPRK 276
>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 293
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 121 QDVEVISNDKLKSVDYRVVPNVH 143
++ ++ ND LK V+YR++P H
Sbjct: 153 HELNILENDFLKRVNYRIIPRDH 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,993,022
Number of Sequences: 62578
Number of extensions: 239291
Number of successful extensions: 638
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 32
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)