BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048043
(742 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 252/640 (39%), Positives = 356/640 (55%), Gaps = 40/640 (6%)
Query: 117 TTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEF 176
TT + +FLG + S + +++GV+DTGI P PSF DEG PPP KWKG CE
Sbjct: 1 TTRSWDFLGFPLTVP--RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 177 KGA-ACNNKLIGARNFLQGSTGEP-----PLDDEXXXXXXXXXXXXNFVNGANVFGQADG 230
CN K+IGAR++ G P P D V+ AN++G G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 231 TAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAAS-VPFFEDPLA 289
TA G PLA +A YKVC DGCS++ + AA D AI DGVD++SLS+G A+ +F D +A
Sbjct: 119 TARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIA 178
Query: 290 IGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDG 349
IGSF A+++ I S SAGN GPN T+++ +PW+LSV AST DR V V++GN + G
Sbjct: 179 IGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQG 238
Query: 350 EALFQPKDFPSKQFPLI----YPGANGNVSSAQ-CSPGSLSSN-IRGKLVLCERGGGERT 403
++ F ++ +PL+ P + S+++ C+ S++ N ++GK+V+CE G
Sbjct: 239 VSI---NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPH- 294
Query: 404 KKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATI 463
+ K G +LM Y AD + LP+ + + YI S SP ATI
Sbjct: 295 ---EFFKSLDGAAGVLMTSNTRDY---ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATI 348
Query: 464 VFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWP-FSVENKTNTKST 522
FK T I S P + SFSSRGP+ A+ ++KPDI GPGV ILAAWP + +
Sbjct: 349 -FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL 407
Query: 523 FNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPAD 582
FN+++GTSMSCPH++G+A +K+ +P WSPAAIKSA+MTTA ++ R P
Sbjct: 408 FNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTAS--------PMNARFNPQA 459
Query: 583 MFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMINVQCSKVSGIAE 642
FA G+GHVNP A PGL+YD DY+ +LCG Y+ Q V+ I C+ +
Sbjct: 460 EFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRV 519
Query: 643 TELNYPSFSVILGST---SQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKK 699
+LNYPSF + + + +Q +NRT+T+V S+Y I AP+G+T++V P +SF
Sbjct: 520 WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGL 579
Query: 700 NQKAIYSITFTRSQKTSALFAQGYLSWVSTKHTVRSPIAV 739
+ +++T S K L W H VRSPI +
Sbjct: 580 GDRKSFTLTVRGSIK--GFVVSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 249/656 (37%), Positives = 365/656 (55%), Gaps = 51/656 (7%)
Query: 117 TTHTPNFLGLHQNSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKC-- 174
TTHT +FL L+ +SG W S LG+ VI+ V+D+GI P SF D+GMP P +WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 175 --EFKGAACNNKLIGARNFLQGSTGEPPL---------DDEXXXXXXXXXXXXNFVNGAN 223
+F + CN KLIGA F +G P D + NF G +
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 224 VFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPF 283
FG A GTA G+AP A LA+YK +G S + AAMD A+ DGVD++S+S G +P
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPL 180
Query: 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGN 343
+ED ++I SF A+ K + VS SAGN GP + +N +PWIL V + TDR+ ++ LGN
Sbjct: 181 YEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLGN 240
Query: 344 QAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNI---RGKLVLCERGGG 400
G +LF + F + P+IY N + + CS L S + +V+C+ G
Sbjct: 241 GLKIRGWSLFPARAF-VRDSPVIY-----NKTLSDCSSEELLSQVENPENTIVICD-DNG 293
Query: 401 ERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPN 460
+ + + +++ A I +++ + + P+ P V V+ G+ + Y+ ++ +P
Sbjct: 294 DFSDQMRIITRARLKAAIFISEDPGVFRSATFPN--PGVVVNKKEGKQVINYVKNSVTPT 351
Query: 461 ATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWP---FSVENKT 517
ATI F+ T + K P +A+ S+RGPS + GI KPDI+ PGV ILAA+P F+ T
Sbjct: 352 ATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGT 411
Query: 518 NT--KSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVD 575
N + + + +GTSM+ PH +G+AA+LK+AHP+WSP+AI+SA+MTTAD + KPI D
Sbjct: 412 NILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD 471
Query: 576 ----QRLLPADMFAVGAGHVNPSSANDPGLIYDIQPDDYIPYLCGLNYSDQHVQDIVMIN 631
+ P DM GAGHV+P+ A DPGL+YD P DY+ LC LN++++ + I +
Sbjct: 472 SDNNKAATPLDM---GAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSS 528
Query: 632 V--QCSKVSGIAETELNYPSFSVI------LGSTSQTYNRTVTNVGQAESSYTHKIVAPE 683
CS S +LNYPSF + Q + RTVTNVG+ ++Y K+ AP+
Sbjct: 529 ASHNCSNPSA----DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPK 584
Query: 684 GVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVST--KHTVRSPI 737
T++V P+ + F KN+K Y++T G ++WV H+VRSPI
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPI 640
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 478 LASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537
+ FSSRGP+ + LKP+++ PG I+AA + GT+M+ PH++
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVA 366
Query: 538 GVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596
G+AALL AHP W+P +K+A++ TADIV D I D A GAG VN A
Sbjct: 367 GIAALLLQAHPSWTPDKVKTALIETADIVKPD--EIAD--------IAYGAGRVNAYKA 415
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 184 KLIGARNFLQGSTGEPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAI 243
K+IG +F+ G T P DD A ++G G+AP A L
Sbjct: 160 KVIGWVDFVNGKT--TPYDDNGHGTHVASIA-------AGTGAASNGKYKGMAPGAKLVG 210
Query: 244 YKVCDFDGC-SESRVYAAMDTAIDD----GVDVLSLSLGAASVPFFEDPLAIGSFSAIQK 298
KV + G S S + +D A+ + G+ V++LSLG++ D L+ +A
Sbjct: 211 IKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDA 270
Query: 299 EIFVSCSAGNEGPNPST--SSNEAPWILSVGA 328
+ V +AGN GPN T S A +++VGA
Sbjct: 271 GLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 110/469 (23%), Positives = 195/469 (41%), Gaps = 80/469 (17%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFK----------GAACNNKLIGA 188
G G ++ V+D G H ++ A+++ K + + G N+K+
Sbjct: 25 GAGTVVAVIDAGFDKNHEAW--RLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY 82
Query: 189 RNFLQGSTGEPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTA----------VGIAPL 238
++ G+ +D E +G +V G G A G P
Sbjct: 83 HDY--SKDGKTAVDQE---------------HGTHVSGILSGNAPSETKEPYRLEGAMPE 125
Query: 239 AHLAIYKVCDFDGCSE-SRVYA-AMDTAIDDGVDVLSLSLGAASVPF--FEDPLAIGSFS 294
A L + +V +G ++ +R YA A+ A++ G V+++S G A++ + D
Sbjct: 126 AQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDY 185
Query: 295 AIQKEIFVSCSAGNE---GPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEA 351
A K + + SAGN+ G + P VG S + A
Sbjct: 186 AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETA 245
Query: 352 LFQPKDFPSKQFPLIYPGA---NGNVSSAQCSPGSLS---SNIRGKLVLCERGGGERTKK 405
+ D +K+ P++ N A + G +++GK+ L ERG + K
Sbjct: 246 TVKTDDHQAKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDK 305
Query: 406 GQVVKDAGGIGMILMNDKLNGYS-TLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIV 464
K AG +G+++ +++ G+ L + +PA +S G +K + TI
Sbjct: 306 IANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLK------DNSKKTIT 359
Query: 465 FKGT--VIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522
F T V+ S +L+ FSS G + + G +KPDI PG +IL+ SV N +
Sbjct: 360 FNATPKVLPTASDTKLSRFSSWG--LTADGNIKPDIAAPGQDILS----SVAN-----NK 408
Query: 523 FNMVAGTSMSCPHLSGVAALLK----SAHPDWSPAA----IKSAIMTTA 563
+ ++GTSMS P ++G+ LL+ + +PD +P+ K +M++A
Sbjct: 409 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 457
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/462 (24%), Positives = 193/462 (41%), Gaps = 90/462 (19%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFK----------GAACNNKLIGA 188
G G ++ V+D G H ++ A+++ K + + G N+K+
Sbjct: 16 GAGTVVAVIDAGFDKNHEAW--RLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY 73
Query: 189 RNFLQGSTGEPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTA----------VGIAPL 238
++ G+ +D E +G +V G G A G P
Sbjct: 74 HDY--SKDGKTAVDQE---------------HGTHVSGILSGNAPSETKEPYRLEGAXPE 116
Query: 239 AHLAIYKVCDFDGCSE-SRVYA-AMDTAIDDGVDVLSLSLGAASVPF--FEDPLAIGSFS 294
A L + +V +G ++ +R YA A+ AI+ G V++ S G A++ + D
Sbjct: 117 AQLLLXRVEIVNGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDY 176
Query: 295 AIQKEIFVSCSAGNE-----------GPNPST----SSNEAPWILSVGASTTDRSIVASV 339
A K + + SAGN+ +P + A L+V + + D+ + +V
Sbjct: 177 AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETV 236
Query: 340 ELGNQAVYDGE--ALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCER 397
+ D E L + P+K + Y AN +++GK+ L ER
Sbjct: 237 RVKTADQQDKEXPVLSTNRFEPNKAYDYAY--ANRGTKEDDFK------DVKGKIALIER 288
Query: 398 GGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTS 457
G + K K AG +G+++ +++ G+ P LP V AA S K +
Sbjct: 289 GDIDFKDKIAKAKKAGAVGVLIYDNQDKGF-----PIELPNVDQXPAAFISRKDGLLLKD 343
Query: 458 SPNATIVFKGT--VIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVEN 515
+P TI F T V+ S +L+ FSS G + + G +KPDI PG +IL+ SV N
Sbjct: 344 NPQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILS----SVAN 397
Query: 516 KTNTKSTFNMVAGTSMSCPHLSGVAALLK----SAHPDWSPA 553
+ + ++GTS S P ++G+ LL+ + +PD +P+
Sbjct: 398 -----NKYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPS 434
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSICSTLP---GNKYGAKS------GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 36/143 (25%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G V + V+D+GI HP K+ G +F+ T
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETN- 56
Query: 199 PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSE-SRV 257
P D N V G+AP A L KV DG + S +
Sbjct: 57 -PFQDNNSHGTHVAGTVAALDNSIGVL--------GVAPSASLYAVKVLGADGSGQYSWI 107
Query: 258 YAAMDTAIDDGVDVLSLSLGAAS 280
++ AI + +DV+++SLG S
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GTSM+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSICSTLP---GNKYGAKS------GTSMAS 215
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GTSM+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSICSTLP---GNKYGAKS------GTSMAS 215
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSICSTLP---GNKYGAKS------GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 36/143 (25%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G V + V+D+GI HP K+ G +F+ T
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETN- 56
Query: 199 PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSE-SRV 257
P D N V G+AP A L KV DG + S +
Sbjct: 57 -PFQDNNSHGTHVAGTVAALNNSIGVL--------GVAPCASLYAVKVLGADGSGQYSWI 107
Query: 258 YAAMDTAIDDGVDVLSLSLGAAS 280
++ AI + +DV+++SLG S
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I++ P NK KS GT+M+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSIVSTLP---GNKYGAKS------GTAMAS 215
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I++ P NK KS GT+M+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSIVSTLP---GNKYGAKS------GTAMAS 215
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP---GNKYGAKS------GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 36/143 (25%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G V + V+D+GI HP K+ G +F+ T
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETN- 56
Query: 199 PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSE-SRV 257
P D N V G+AP A L KV DG + S +
Sbjct: 57 -PFQDNNSHGTHVAGTVAALNNSIGVL--------GVAPCASLYAVKVLGADGSGQYSWI 107
Query: 258 YAAMDTAIDDGVDVLSLSLGAAS 280
++ AI + +DV+++SLG S
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GTSM+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
VAAL+K +P WS I++ + TA
Sbjct: 224 VAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK + +GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIXSTLP---GNK------YGAYSGTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 36/143 (25%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G V + V+D+GI HP K+ G +F+ T
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETN- 56
Query: 199 PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSE-SRV 257
P D N V G+AP A L KV DG + S +
Sbjct: 57 -PFQDNNSHGTHVAGTVAALDNSIGVL--------GVAPSASLYAVKVLGADGSGQYSWI 107
Query: 258 YAAMDTAIDDGVDVLSLSLGAAS 280
++ AI + +DV+++SLG S
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK + +GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIXSTLP---GNK------YGAYSGTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 36/143 (25%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G V + V+D+GI HP K+ G +F+ T
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETN- 56
Query: 199 PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSE-SRV 257
P D N V G+AP A L KV DG + S +
Sbjct: 57 -PFQDNNSHGTHVAGTVAALDNSIGVL--------GVAPSASLYAVKVLGADGSGQYSWI 107
Query: 258 YAAMDTAIDDGVDVLSLSLGAAS 280
++ AI + +DV+++SLG S
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GT M+
Sbjct: 173 SSNQRASFSSVGPEL--------DVMAPGVSICSTLP---GNKYGAKS------GTXMAS 215
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 121
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP---GNKYGAKS------GTXMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 36/143 (25%)
Query: 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGE 198
G V + V+D+GI HP K+ G +F+ T
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL-------------------------KVAGGASFVPSETN- 56
Query: 199 PPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSE-SRV 257
P D N V G+AP A L KV DG + S +
Sbjct: 57 -PFQDNNSHGTHVAGTVAALNNSIGVL--------GVAPSASLYAVKVLGADGSGQYSWI 107
Query: 258 YAAMDTAIDDGVDVLSLSLGAAS 280
++ AI + +DV+++SLG S
Sbjct: 108 INGIEWAIANNMDVINMSLGGPS 130
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK KS GT M+
Sbjct: 170 SSNQRASFSSVGPEL--------DVMAPGVSIWSTLP---GNKYGAKS------GTXMAS 212
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 213 PHVAGAAALILSKHPNWTNTQVRSSLENT 241
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG S
Sbjct: 67 GTVLAVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 118
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GTSM+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GTSM+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GTSM+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GTSM+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GTSM+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GTSM+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTSMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + A FSS GP + D++ PGV+I + P + ++GTSM+
Sbjct: 173 SSNQRAPFSSVGPEL--------DVMAPGVSICSTLP---------GGKYGALSGTSMAS 215
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+W+ ++S++ TA
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG+ S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK + +GT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP---GNK------YGAYSGTXMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTXMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTXMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P NK + +GT M+
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP---GNK------YGAYSGTXMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV DG + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPCASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAA 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ + V +AGNEG + S+S+ + P +++VGA S+ R+ +SV
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPAKYPSVIAVGAVDSSNQRASFSSV 192
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + A FSS GP + D++ PGV+I + P + ++GT+M+
Sbjct: 173 SSNQRAPFSSVGPEL--------DVMAPGVSICSTLP---------GGKYGALSGTAMAS 215
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+W+ ++S++ TA
Sbjct: 216 PHVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 230 GTAVGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAAS 280
GT + +AP A L KV DG + S + ++ AI + +DV+++SLG+ S
Sbjct: 70 GTVLAVAPSASLYAVKVLGADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GT M+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GT M+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PG + + +P TNT +T N GTSM+
Sbjct: 182 SNSNRASFSSVGAEL--------EVMAPGAGVYSTYP------TNTYATLN---GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+ S + +++ + +TA
Sbjct: 225 PHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PG + + +P TNT +T N GTSM+
Sbjct: 182 SNSNRASFSSVGAEL--------EVMAPGAGVYSTYP------TNTYATLN---GTSMAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+ S + +++ + +TA
Sbjct: 225 PHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GT M+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PG + + +P TNT +T N GTSM+
Sbjct: 181 SNSNRASFSSVGAEL--------EVMAPGAGVYSTYP------TNTYATLN---GTSMAS 223
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+ S + +++ + +TA
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 17/85 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538
ASFS G + DI+ PGVN+ + +P ST+ + GT M+ PH++G
Sbjct: 181 ASFSQYGAGL--------DIVAPGVNVQSTYP---------GSTYASLNGTXMATPHVAG 223
Query: 539 VAALLKSAHPDWSPAAIKSAIMTTA 563
AAL+K +P WS I++ + TA
Sbjct: 224 AAALVKQKNPSWSNVQIRNHLKNTA 248
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PG + + +P TNT +T N GTSM+
Sbjct: 181 SNSNRASFSSVGAEL--------EVMAPGAGVYSTYP------TNTYATLN---GTSMAS 223
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+ S + +++ + +TA
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PG + + +P TNT +T N GTSM+
Sbjct: 181 SNSNRASFSSVGAEL--------EVMAPGAGVYSTYP------TNTYATLN---GTSMAS 223
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+ S + +++ + +TA
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 17/91 (18%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
S + ASFSS G + D++ PGV+I + P T+ GTSM+
Sbjct: 181 NSANQRASFSSAGSEL--------DVMAPGVSIQSTLP---------GGTYGAYNGTSMA 223
Query: 533 CPHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP W+ A ++ + +TA
Sbjct: 224 TPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV D G + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGG---PTGSTALKTV 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA 328
A+ I V+ +AGNEG + STS+ + P ++VGA
Sbjct: 139 VDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGA 179
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PG + + +P TNT +T N GTSM+
Sbjct: 181 SNSNRASFSSVGAEL--------EVMAPGAGVYSTYP------TNTYATLN---GTSMAS 223
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+ S + +++ + +TA
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 17/89 (19%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S+ + ASFSS GP + D++ PGV+I + P N +N GTS +
Sbjct: 182 SSNQRASFSSVGPEL--------DVMAPGVSIQSTLP------GNKYGAYN---GTSXAS 224
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562
PH++G AAL+ S HP+W+ ++S++ T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 468 TVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527
TV S+ ASFS+ G + D+ PG +I +AW ++ + T T +
Sbjct: 175 TVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAW-YTSDTATQT------LN 219
Query: 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDG 570
GTSM+ PH++GVAAL +P +PA++ SAI+ A L G
Sbjct: 220 GTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLSG 262
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 17/91 (18%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
S+ + ASFSS G + D++ PGV+I + P T+ GT M+
Sbjct: 181 NSSNQRASFSSVGSEL--------DVMAPGVSIQSTLP---------GGTYGAYNGTXMA 223
Query: 533 CPHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP W+ A ++ + +TA
Sbjct: 224 TPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP A L KV D G + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVAPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGG---PTGSTALKTV 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA--STTDRSIVASV 339
A+ I V+ +AGNEG + STS+ + P ++VGA S+ R+ +SV
Sbjct: 139 VDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSV 192
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 17/91 (18%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
S+ + ASFSS G + D++ PGV+I + P T+ GT M+
Sbjct: 181 NSSNQRASFSSAGSEL--------DVMAPGVSIQSTLP---------GGTYGAYNGTCMA 223
Query: 533 CPHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP W+ A ++ + +TA
Sbjct: 224 TPHVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 233 VGIAPLAHLAIYKVCDFDGCSE-SRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G++P A L KV D G + S + ++ AI + +DV+++SLG P L
Sbjct: 82 LGVSPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGG---PTGSTALKTV 138
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSS----NEAPWILSVGA 328
A+ I V+ +AGNEG + STS+ + P ++VGA
Sbjct: 139 VDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGA 179
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 468 TVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527
TV S +SFS+ G + DI PG +I ++W S S N ++
Sbjct: 177 TVGSTTSNDSRSSFSNYGTCL--------DIYAPGSSITSSWYTS-------NSATNTIS 221
Query: 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMT--TADIVSLDGKPIVDQRLL 579
GTSM+ PH++GVAAL +P+ SPA + + + T TAD V+ D K +LL
Sbjct: 222 GTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKVT-DAKTGSPNKLL 274
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PG + + +P TNT +T N GT M+
Sbjct: 181 SNSNRASFSSVGAEL--------EVMAPGAGVYSTYP------TNTYATLN---GTXMAS 223
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S HP+ S + +++ + +TA
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 15/98 (15%)
Query: 489 ASPGILKP-------DIIGPGVNILAAWPFSVENKTNTKST--------FNMVAGTSMSC 533
A PG+ P DI P V++ A +++ K +T + GTSM+
Sbjct: 313 ALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMAT 372
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGK 571
PH+SGVA L+ S HP+ S + +++A+ TAD +S+ G+
Sbjct: 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR 410
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 17/90 (18%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S ASFSS G + +++ PGV++ + +P +NT ++ N GTSM+
Sbjct: 181 SNKNRASFSSVGSEL--------EVMAPGVSVYSTYP------SNTYTSLN---GTSMAS 223
Query: 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++G AAL+ S +P S + +++ + +TA
Sbjct: 224 PHVAGAAALILSKYPTLSASQVRNRLSSTA 253
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 233 VGIAPLAHLAIYKVCDFDGC-SESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291
+G+AP L KV + G S S + + ++ A +G+DV+++SLG P L
Sbjct: 81 LGVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLGG---PSGSTALKQA 137
Query: 292 SFSAIQKEIFVSCSAGNEGPNPSTSSNEAPW----ILSVGA--STTDRSIVASV 339
A I V +AGN G + S ++ P +++VGA S +R+ +SV
Sbjct: 138 VDKAYASGIVVVAAAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSNKNRASFSSV 191
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 459 PNATIVFKGTVIGKKSTPELASFSSRGP-SIASPGILKP---DIIGPGVNILAAWPFSVE 514
PNA V + + T +A +SSRG S A +++ +I PG ++ + W
Sbjct: 184 PNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW----- 238
Query: 515 NKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDG 570
+N ++GTSM+ PH+SG+AA + + +P S ++S + A V + G
Sbjct: 239 ----YNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 19/94 (20%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536
LASFS+ G + D++ PGV+I++ T T + + ++GTSM+ PH+
Sbjct: 190 RLASFSNYGTWV--------DVVAPGVDIVS---------TITGNRYAYMSGTSMASPHV 232
Query: 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDG 570
+G+AALL S + I+ AI TAD +S G
Sbjct: 233 AGLAALLASQGRN--NIEIRQAIEQTADKISGTG 264
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 19/75 (25%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
S +ASFS+R +P++ PGV+IL+ +P ++ + GT+M+
Sbjct: 206 DSNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMA 246
Query: 533 CPHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 247 TPHVSGVVALIQAAY 261
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 266 DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG-PNPSTSSNEAPWIL 324
DD +V+S+SLG + + + I +++A I + ++GNEG P+PS + P ++
Sbjct: 145 DDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPA-AYPEVI 200
Query: 325 SVGASTTDRSI 335
+VGA ++ +I
Sbjct: 201 AVGAIDSNDNI 211
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 19/75 (25%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
S +ASFS+R +P++ PGV+IL+ +P ++ + GT+M+
Sbjct: 208 DSNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMA 248
Query: 533 CPHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 249 TPHVSGVVALIQAAY 263
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 266 DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG-PNPSTSSNEAPWIL 324
DD +V+S+SLG + + + I +++A I + ++GNEG P+PS + P ++
Sbjct: 147 DDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPA-AYPEVI 202
Query: 325 SVGASTTDRSI 335
+VGA ++ +I
Sbjct: 203 AVGAIDSNDNI 213
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 459 PNATIVFKGTVIGKKSTPELASFSSRGP-SIASPGILKP---DIIGPGVNILAAWPFSVE 514
PNA V + + T +A +SSRG S A +++ +I PG ++ + W
Sbjct: 184 PNAIAVAALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW----- 238
Query: 515 NKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDG 570
+N ++GT M+ PH+SG+AA + + +P S ++S + A V + G
Sbjct: 239 ----YNGGYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 29/123 (23%)
Query: 432 DPHLLPAVHVSYAAGESIKAYINSTSSPNAT-------IVFKGTVIGKKSTPELASFSSR 484
D +L + +Y AG I A + +P+ + ++ G + S +ASFS+R
Sbjct: 172 DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIASFSNR 228
Query: 485 GPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLK 544
+P++ PGV+IL+ +P ++ + GT+M+ PH+SGV AL++
Sbjct: 229 ----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVVALIQ 269
Query: 545 SAH 547
+A+
Sbjct: 270 AAY 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 19/74 (25%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S +ASFS+R +P++ PGV+IL+ +P ++ + GT+M+
Sbjct: 287 SNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMAT 327
Query: 534 PHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 26/125 (20%)
Query: 233 VGIAPLAHLAIYKVCDFDGC-SESRVYAAMDTAI--------------------DDGVDV 271
VG+AP + +V D G S S + ++ AI DD +V
Sbjct: 171 VGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEV 230
Query: 272 LSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG-PNPSTSSNEAPWILSVGAST 330
+S+SLG + + + I +++A I + ++GNEG P+PS + P +++VGA
Sbjct: 231 ISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPA-AYPEVIAVGAID 286
Query: 331 TDRSI 335
++ +I
Sbjct: 287 SNDNI 291
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 29/123 (23%)
Query: 432 DPHLLPAVHVSYAAGESIKAYINSTSSPNAT-------IVFKGTVIGKKSTPELASFSSR 484
D +L + +Y AG I A + +P+ + ++ G + S +ASFS+R
Sbjct: 172 DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI---DSNDNIASFSNR 228
Query: 485 GPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLK 544
+P++ PGV+IL+ +P ++ + GT+M+ PH+SGV AL++
Sbjct: 229 ----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMATPHVSGVVALIQ 269
Query: 545 SAH 547
+A+
Sbjct: 270 AAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 19/74 (25%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S +ASFS+R +P++ PGV+IL+ +P ++ + GT+M+
Sbjct: 284 SNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMAT 324
Query: 534 PHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 325 PHVSGVVALIQAAY 338
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 26/125 (20%)
Query: 233 VGIAPLAHLAIYKVCDFDGC-SESRVYAAMDTAI--------------------DDGVDV 271
VG+AP + +V D G S S + ++ AI DD +V
Sbjct: 168 VGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEV 227
Query: 272 LSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG-PNPSTSSNEAPWILSVGAST 330
+S+SLG + + + I +++A I + ++GNEG P+PS + P +++VGA
Sbjct: 228 ISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPA-AYPEVIAVGAID 283
Query: 331 TDRSI 335
++ +I
Sbjct: 284 SNDNI 288
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 19/74 (25%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S +ASFS+R +P++ PGV+IL+ +P ++ + GT+M+
Sbjct: 287 SNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMAT 327
Query: 534 PHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 26/125 (20%)
Query: 233 VGIAPLAHLAIYKVCDFDGC-SESRVYAAMDTAI--------------------DDGVDV 271
VG+AP + +V D G S S + ++ AI DD +V
Sbjct: 171 VGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEV 230
Query: 272 LSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG-PNPSTSSNEAPWILSVGAST 330
+S+SLG + + + I +++A I + ++GNEG P+PS + P +++VGA
Sbjct: 231 ISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPA-AYPEVIAVGAID 286
Query: 331 TDRSI 335
++ +I
Sbjct: 287 SNDNI 291
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 19/74 (25%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S +ASFS+R +P++ PGV+IL+ +P ++ + GT+M+
Sbjct: 287 SNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMAT 327
Query: 534 PHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 19/74 (25%)
Query: 474 STPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533
S +ASFS+R +P++ PGV+IL+ +P ++ + GT+M+
Sbjct: 287 SNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTAMAT 327
Query: 534 PHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 19/75 (25%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
S +ASFS+R +P++ PGV+IL+ +P ++ + GT M+
Sbjct: 206 DSNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTXMA 246
Query: 533 CPHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 247 TPHVSGVVALIQAAY 261
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 266 DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG-PNPSTSSNEAPWIL 324
DD +V+S+SLG + + + I +++A I + ++GNEG P+PS + P ++
Sbjct: 145 DDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPA-AYPEVI 200
Query: 325 SVGASTTDRSI 335
+VGA ++ +I
Sbjct: 201 AVGAIDSNDNI 211
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 19/75 (25%)
Query: 473 KSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
S +ASFS+R +P++ PGV+IL+ +P ++ + GT M+
Sbjct: 206 DSNDNIASFSNR----------QPEVSAPGVDILSTYP---------DDSYETLMGTCMA 246
Query: 533 CPHLSGVAALLKSAH 547
PH+SGV AL+++A+
Sbjct: 247 TPHVSGVVALIQAAY 261
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 266 DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEG-PNPSTSSNEAPWIL 324
DD +V+S+SLG + + + I +++A I + ++GNEG P+PS + P ++
Sbjct: 145 DDAAEVISMSLGGPADDSYLYDMIIQAYNA---GIVIVAASGNEGAPSPSYPA-AYPEVI 200
Query: 325 SVGASTTDRSI 335
+VGA ++ +I
Sbjct: 201 AVGAIDSNDNI 211
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG +I + +P ST+ ++GTSM+ PH++GVA LL S S + I+
Sbjct: 201 DVAAPGSSIYSTYP---------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIR 249
Query: 557 SAIMTTADIVSLDGKPIVDQRL 578
+AI TAD +S G R+
Sbjct: 250 AAIENTADKISGTGTYWAKGRV 271
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 475 TPELASFSSR--GPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532
T +A FSSR G S+ +PG+ + PG + + + T++ GTSM+
Sbjct: 325 TFRVAGFSSRSDGVSVGAPGVTILSTV-PGEDSIGYEGHNENVPATNGGTYDYYQGTSMA 383
Query: 533 CPHLSGVAALLKSAHPDWSPAAIKSAIMTTA 563
PH++GV A+L P+ P I+ + TA
Sbjct: 384 APHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG I + +P ST+ ++GTSM+ PH++GVA LL S S + I+
Sbjct: 201 DVAAPGSWIYSTYP---------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIR 249
Query: 557 SAIMTTADIVSLDGKPIVDQRL 578
+AI TAD +S G R+
Sbjct: 250 AAIENTADKISGTGTYWAKGRV 271
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 501 PGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA 546
PG NIL+ V +S++ M AGTSM+ PH+SGVAAL+ SA
Sbjct: 250 PGTNILST--IDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 18/90 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTN--TKSTFNMVAGTSMSCPHL 536
ASFS+ G + D+ PG +IL+ +V++ T ++ +AGTSM+ PH+
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILS----TVDSGTRRPVSDAYSFMAGTSMATPHV 282
Query: 537 SGVAALLKSA----HPDWSPAAIKSAIMTT 562
SGVAAL+ SA + + +PA +K +++T
Sbjct: 283 SGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 18/90 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTN--TKSTFNMVAGTSMSCPHL 536
ASFS+ G + D+ PG +IL+ +V++ T ++ +AGTSM+ PH+
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILS----TVDSGTRRPVSDAYSFMAGTSMATPHV 282
Query: 537 SGVAALLKSA----HPDWSPAAIKSAIMTT 562
SGVAAL+ SA + + +PA +K +++T
Sbjct: 283 SGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 501 PGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA 546
PG NIL+ V +S++ M AGTSM+ PH+SGVAAL+ SA
Sbjct: 250 PGTNILST--IDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKT---NTKSTFNMVAGTSMSC 533
+A FSSRGP+ G +KPD++ PG IL+A + + N S + + GTSM+
Sbjct: 201 HVAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 534 PHLSGVAALLK 544
P ++G A L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 18/90 (20%)
Query: 479 ASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTN--TKSTFNMVAGTSMSCPHL 536
ASFS+ G + D+ PG +IL+ +V++ T ++ +AGTSM+ PH+
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILS----TVDSGTRRPVSDAYSFMAGTSMATPHV 282
Query: 537 SGVAALLKSA----HPDWSPAAIKSAIMTT 562
SGVAAL+ SA + + +PA +K +++T
Sbjct: 283 SGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 81/214 (37%), Gaps = 49/214 (22%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ S G G IIGV+DTG HP ++ ++IG N
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 193 QGSTG-EPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG 251
G E D G+ V VG+AP A L I K DG
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAAAETGSGV--------VGVAPKADLFIIKALSGDG 122
Query: 252 CSE-SRVYAAMDTAID------DGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSC 304
E + A+ A+D + + ++++SLG P + L A+ + V C
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGG---PTDSEELHDAVKYAVSNNVSVVC 179
Query: 305 SAGNEGPNPSTSSNEAPW------ILSVGASTTD 332
+AGNEG + +NE + +++VGA D
Sbjct: 180 AAGNEG-DGREDTNEFAYPAAYNEVIAVGAVDFD 212
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPD 549
DI+ PGV I T S + ++GT+M+ PH++G AL+ + D
Sbjct: 226 DIVAPGVGI---------KSTYLDSGYAELSGTAMAAPHVAGALALIINLAED 269
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 81/214 (37%), Gaps = 49/214 (22%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ S G G IIGV+DTG HP ++ ++IG N
Sbjct: 16 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 52
Query: 193 QGSTG-EPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG 251
G E D G+ V VG+AP A L I K DG
Sbjct: 53 TDYGGDETNFSDNNGHGTHVAGTVAAAETGSGV--------VGVAPKADLFIIKALSGDG 104
Query: 252 CSE-SRVYAAMDTAID------DGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSC 304
E + A+ A+D + + ++++SLG P + L A+ + V C
Sbjct: 105 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGG---PTDSEELHDAVKYAVSNNVSVVC 161
Query: 305 SAGNEGPNPSTSSNEAPW------ILSVGASTTD 332
+AGNEG + +NE + +++VGA D
Sbjct: 162 AAGNEG-DGREDTNEFAYPAAYNEVIAVGAVDFD 194
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPD 549
DI+ PGV I T S + ++GT+M+ PH++G AL+ + D
Sbjct: 208 DIVAPGVGI---------KSTYLDSGYAELSGTAMAAPHVAGALALIINLAED 251
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 439 VHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDI 498
V V+ AAG + N++ + T+ TV S ++FS+ G + DI
Sbjct: 154 VFVAVAAGNDNRDAANTSPASEPTVC---TVGATDSNDVRSTFSNYGRVV--------DI 202
Query: 499 IGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALL 543
PG +I + W + +TNT ++GTSM+ PH++G+AA L
Sbjct: 203 FAPGTSITSTW---IGGRTNT------ISGTSMATPHIAGLAAYL 238
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 477 ELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKT---NTKSTFNMVAGTSMSC 533
+A FSSRGP+ G +KPD++ PG IL+A + + N S + GTS +
Sbjct: 201 HVAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 534 PHLSGVAALLK 544
P ++G A L+
Sbjct: 259 PIVAGNVAQLR 269
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
DI GPG +IL+ W + T + ++GTSM+ PH++G+AA L + + +A +
Sbjct: 200 DIFGPGTDILSTW---IGGSTRS------ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
Query: 557 SAIMTTADIVSLDGKPIVDQRLLPADMF 584
I TA+ L P LL + +
Sbjct: 251 -YIADTANKGDLSNIPFGTVNLLAYNNY 277
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSF 158
S ++ D + G+G + V+DTGI HP F
Sbjct: 21 STYYYDESAGQGSCVYVIDTGIEASHPEF 49
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
DI GPG +IL+ W + T + ++GTSM+ PH++G+AA L + + +A +
Sbjct: 200 DIFGPGTSILSTW---IGGSTRS------ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
Query: 557 SAIMTTADIVSLDGKPIVDQRLLPADMF 584
I TA+ L P LL + +
Sbjct: 251 -YIADTANKGDLSNIPFGTVNLLAYNNY 277
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSF 158
S ++ D + G+G + V+DTGI HP F
Sbjct: 21 STYYYDESAGQGSCVYVIDTGIEASHPEF 49
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
DI GPG +IL+ W + T + ++GTSM+ PH++G+AA L + + +A +
Sbjct: 200 DIFGPGTSILSTW---IGGSTRS------ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
Query: 557 SAIMTTADIVSLDGKPIVDQRLLPADMF 584
I TA+ L P LL + +
Sbjct: 251 -YIADTANKGDLSNIPFGTVNLLAYNNY 277
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSF 158
S ++ D + G+G + V+DTGI HP F
Sbjct: 21 STYYYDESAGQGSCVYVIDTGIEASHPEF 49
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 468 TVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527
TV S+ +SFS+ G + DI PG NIL+ W T N ++
Sbjct: 182 TVGATTSSDARSSFSNYGNLV--------DIFAPGSNILSTW---------IGGTTNTIS 224
Query: 528 GTSMSCPHLSGVAALL 543
GTSM+ PH+ G+ A L
Sbjct: 225 GTSMATPHIVGLGAYL 240
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 80/214 (37%), Gaps = 49/214 (22%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ S G G IIGV+DTG HP ++ ++IG N
Sbjct: 34 WRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 193 QGSTG-EPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG 251
G E D G+ V VG+AP A L I K DG
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAAAETGSGV--------VGVAPKADLFIIKALSGDG 122
Query: 252 CSE-SRVYAAMDTAID------DGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSC 304
E + A+ A+D + + ++++SLG P + L A+ + V
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGG---PTDSEELHDAVKYAVSNNVSVVX 179
Query: 305 SAGNEGPNPSTSSNEAPW------ILSVGASTTD 332
+AGNEG + +NE + +++VGA D
Sbjct: 180 AAGNEG-DGREDTNEFAYPAAYNEVIAVGAVDFD 212
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALL 543
DI+ PGV I T S + ++GT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGI---------KSTYLDSGYAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 80/214 (37%), Gaps = 49/214 (22%)
Query: 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL 192
W+ S G G IIGV+DTG HP ++ ++IG N
Sbjct: 34 WRASAKGAGQIIGVIDTGXQVDHPDLAE-----------------------RIIGGVNLT 70
Query: 193 QGSTG-EPPLDDEXXXXXXXXXXXXNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG 251
G E D G+ V VG+AP A L I K DG
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAAAETGSGV--------VGVAPKADLFIIKALSGDG 122
Query: 252 CSE-SRVYAAMDTAID------DGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSC 304
E + A+ A+D + + ++++SLG P + L A+ + V
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGG---PTDSEELHDAVKYAVSNNVSVVX 179
Query: 305 SAGNEGPNPSTSSNEAPW------ILSVGASTTD 332
+AGNEG + +NE + +++VGA D
Sbjct: 180 AAGNEG-DGREDTNEFAYPAAYNEVIAVGAVDFD 212
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALL 543
DI+ PGV I T S + ++GT+M+ PH++G AL+
Sbjct: 226 DIVAPGVGI---------KSTYLDSGYAELSGTAMAAPHVAGALALI 263
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 519 TKSTFNMVAGTSMSCPHLSGVAAL----LKSAHPDWSPAAIKSAIMTTADIVSLDGKPIV 574
T S + GTS + PH++G AL LK + ++SP +IK AI TA
Sbjct: 451 TXSKSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA----------- 499
Query: 575 DQRLLPADMFAVGAGHVNPSSA 596
+L D FA G G +N A
Sbjct: 500 -TKLGYVDPFAQGHGLLNVEKA 520
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 472 KKSTPELASFSSRGPSIASPG--ILKPD--IIGPGVNILAAWPFSVENKTNTKSTFNMVA 527
+ T +A FSSRG + I K D I PG + + W + ++
Sbjct: 196 QNGTYRVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW---------FDGGYATIS 246
Query: 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADI 565
GTSM+ PH +G+AA + + P S ++ + T A +
Sbjct: 247 GTSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASV 284
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
D+ PG I +AW + ++GTSM+ PH++GVAAL + +P +
Sbjct: 196 DLFAPGSQIKSAW---------YDGGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLT 246
Query: 557 SAIMTTA 563
+ + A
Sbjct: 247 GLLNSRA 253
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 525 MVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIV 574
++ GTS + P SG ALL SA+PD S ++ + +A V +P++
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVM 380
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 495 KPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDW---- 550
K I+ PG IL A P + E T GTSM+ P ++G++ALL S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRLT--------GTSMAAPVMTGISALLMSLQVQQGKPV 316
Query: 551 SPAAIKSAIMTTA 563
A+++A++ TA
Sbjct: 317 DAEAVRTALLKTA 329
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 495 KPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDW---- 550
K I+ PG IL A P + E T GTSM+ P ++G++ALL S
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRLT--------GTSMAAPVMTGISALLMSLQVQQGKPV 316
Query: 551 SPAAIKSAIMTTA 563
A+++A++ TA
Sbjct: 317 DAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 495 KPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDW---- 550
K I+ PG IL A P + E T GTSM+ P ++G++ALL S
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRLT--------GTSMAAPVMTGISALLMSLQVQQGKPV 298
Query: 551 SPAAIKSAIMTTA 563
A+++A++ TA
Sbjct: 299 DAEAVRTALLKTA 311
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 58 HSFLPVSISSS---INNQPRMLYCYKNVITGFAAKLTAEQ-AKAMETK---EGFISAH-- 108
H P+S +S + +P M Y +T FA LT EQ A+ +E + EG+I+
Sbjct: 520 HLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQD 579
Query: 109 -VEKTLQLHTTHTPNFLGLHQNSGF 132
+EK L+ T P L Q SG
Sbjct: 580 EIEKQLRNENTLLPATLDYRQVSGL 604
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 58 HSFLPVSISSS---INNQPRMLYCYKNVITGFAAKLTAEQ-AKAMETK---EGFISAH-- 108
H P+S +S + +P M Y +T FA LT EQ A+ +E + EG+I+
Sbjct: 518 HLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQD 577
Query: 109 -VEKTLQLHTTHTPNFLGLHQNSGF 132
+EK L+ T P L Q SG
Sbjct: 578 EIEKQLRNENTLLPATLDYRQVSGL 602
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 17/75 (22%)
Query: 495 KPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALL------KSAHP 548
K I+ PG +IL A P T + +GTS + P +SGVAALL + P
Sbjct: 198 KQGILAPGKDILGAKP--------NGGTIRL-SGTSFATPIVSGVAALLLSLQIKRGEKP 248
Query: 549 DWSPAAIKSAIMTTA 563
D P +K+A++ +A
Sbjct: 249 D--PQKVKNALLASA 261
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 224 VFGQADGTAVGIAPLAHLAIYKVCDFDGCSESR--VYAAMDTAIDDGVDVLSLSLGAASV 281
+FGQ D GIAP I V + S+ + A++ A+++G +++++S G +
Sbjct: 72 IFGQHDSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTD 131
Query: 282 PFFEDPLAIGSFSAIQK-EIFVSCSAGNEGPNPSTSSNEAPWILSVGA 328
D + Q+ + + + GN+G P +L+VGA
Sbjct: 132 AGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGA 179
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 387 NIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMND---KLNGYSTLADPHLLPAVHVSY 443
++ GK+ L +RG K + G +I+ N+ KLNG +D + AV ++
Sbjct: 112 DLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITK 171
Query: 444 AAGESIKAYINSTSSPNATIVFKGTVI 470
G+++ A + + AT+ G +
Sbjct: 172 QEGDALAANLRAGEKITATVKVAGAEV 198
>pdb|2IY9|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli
Length = 347
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 497 DIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIK 556
DI PG NI P + KT T S GTS + +SGV A + S +P + +K
Sbjct: 248 DIAAPGQNITFLRP---DAKTGTGS------GTSEATAIVSGVLAAMTSCNPRATATELK 298
Query: 557 SAIMTTADIVSLDGKPIVDQRLLPAD 582
++ +AD + + R+L A+
Sbjct: 299 RTLLESADKYPSLVDKVTEGRVLNAE 324
>pdb|2H6O|A Chain A, Epstein Barr Virus Major Envelope Glycoprotein
Length = 470
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 491 PGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAA 541
P + D P V + A W + +T+ K + + +GT C ++SG A
Sbjct: 334 PMVTSEDANSPNVTVTAFWAWPNNTETDFKCKWTLTSGTPSGCENISGAFA 384
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,219,075
Number of Sequences: 62578
Number of extensions: 949154
Number of successful extensions: 2365
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2025
Number of HSP's gapped (non-prelim): 242
length of query: 742
length of database: 14,973,337
effective HSP length: 106
effective length of query: 636
effective length of database: 8,340,069
effective search space: 5304283884
effective search space used: 5304283884
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)