Query 048043
Match_columns 742
No_of_seqs 474 out of 3190
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.9E-51 4.2E-56 438.5 28.9 289 113-564 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 6E-51 1.3E-55 450.5 22.1 300 121-603 293-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 3.2E-49 7E-54 408.6 25.1 242 133-566 1-253 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 2.4E-49 5.1E-54 412.5 23.4 270 136-598 1-274 (275)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 3.9E-48 8.4E-53 420.8 28.4 310 131-598 1-346 (346)
6 cd07478 Peptidases_S8_CspA-lik 100.0 2.4E-48 5.3E-53 431.2 27.3 403 137-589 1-455 (455)
7 cd07497 Peptidases_S8_14 Pepti 100.0 3.4E-48 7.4E-53 409.6 25.0 285 139-563 1-311 (311)
8 cd07489 Peptidases_S8_5 Peptid 100.0 6.4E-47 1.4E-51 404.8 26.5 287 130-602 3-302 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.2E-46 2.7E-51 391.1 24.9 247 132-569 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1.9E-45 4.1E-50 391.0 28.6 278 139-596 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 9.5E-46 2.1E-50 379.2 23.9 234 142-589 1-239 (239)
12 cd07493 Peptidases_S8_9 Peptid 100.0 8.3E-45 1.8E-49 378.7 24.7 242 141-564 1-261 (261)
13 cd07481 Peptidases_S8_Bacillop 100.0 1.3E-44 2.8E-49 377.7 25.7 246 139-564 1-264 (264)
14 cd07483 Peptidases_S8_Subtilis 100.0 1E-44 2.2E-49 382.7 24.4 258 140-564 1-291 (291)
15 cd04857 Peptidases_S8_Tripepti 100.0 3.2E-44 6.9E-49 385.9 27.2 220 201-566 182-412 (412)
16 KOG1153 Subtilisin-related pro 100.0 5.2E-45 1.1E-49 375.5 16.9 330 29-564 79-461 (501)
17 cd07485 Peptidases_S8_Fervidol 100.0 7.2E-44 1.6E-48 373.9 25.6 261 131-562 1-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 1.3E-43 2.7E-48 370.9 26.4 255 139-564 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.8E-43 6.1E-48 366.1 24.5 232 132-565 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 7.1E-43 1.5E-47 364.2 25.3 241 129-566 18-259 (260)
21 cd07490 Peptidases_S8_6 Peptid 100.0 3.2E-42 7E-47 358.1 25.6 251 141-564 1-254 (254)
22 cd04847 Peptidases_S8_Subtilis 100.0 1E-42 2.2E-47 368.7 21.4 258 143-564 2-291 (291)
23 cd07494 Peptidases_S8_10 Pepti 100.0 2.2E-42 4.7E-47 364.7 23.6 249 129-567 10-286 (298)
24 cd07496 Peptidases_S8_13 Pepti 100.0 3.2E-42 6.8E-47 363.8 24.7 259 141-562 1-285 (285)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 4E-42 8.8E-47 365.2 25.0 277 135-564 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 8.3E-42 1.8E-46 362.4 23.8 265 134-595 2-297 (297)
27 cd07498 Peptidases_S8_15 Pepti 100.0 1.2E-41 2.6E-46 351.2 24.0 239 142-562 1-242 (242)
28 cd07477 Peptidases_S8_Subtilis 100.0 1.1E-40 2.4E-45 341.1 24.3 226 141-562 1-229 (229)
29 cd04843 Peptidases_S8_11 Pepti 100.0 4.9E-41 1.1E-45 350.4 21.7 244 129-564 4-277 (277)
30 cd07473 Peptidases_S8_Subtilis 100.0 1.8E-40 4E-45 346.0 25.8 251 140-564 2-259 (259)
31 cd07491 Peptidases_S8_7 Peptid 100.0 6.1E-41 1.3E-45 344.1 19.9 210 139-546 2-229 (247)
32 PF00082 Peptidase_S8: Subtila 100.0 4.8E-41 1E-45 354.9 13.3 273 143-598 1-282 (282)
33 cd04059 Peptidases_S8_Protein_ 100.0 4.5E-40 9.7E-45 350.1 20.3 248 129-564 28-297 (297)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.2E-39 4.8E-44 329.7 22.9 221 141-564 1-222 (222)
35 cd07482 Peptidases_S8_Lantibio 100.0 2.4E-39 5.2E-44 344.1 22.8 249 141-562 1-294 (294)
36 KOG4266 Subtilisin kexin isozy 100.0 2.1E-38 4.5E-43 334.6 24.5 380 27-618 46-496 (1033)
37 cd04848 Peptidases_S8_Autotran 100.0 3.1E-38 6.7E-43 330.6 21.9 242 138-564 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 3.1E-33 6.7E-38 307.9 22.8 354 204-741 310-688 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1.9E-33 4.2E-38 287.5 15.5 194 200-562 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 4.2E-31 9.2E-36 271.2 24.5 233 142-562 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 3.9E-24 8.4E-29 243.8 22.7 273 129-598 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 1.8E-21 3.8E-26 196.4 13.5 169 129-328 150-335 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 3.1E-17 6.7E-22 178.3 13.6 100 232-334 83-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 1.3E-10 2.9E-15 109.2 12.0 117 359-488 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 3.9E-10 8.5E-15 103.8 13.4 121 339-462 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 2.2E-09 4.7E-14 90.8 6.6 82 32-116 1-82 (82)
47 KOG3525 Subtilisin-like propro 98.7 1.4E-07 3E-12 103.8 11.8 154 129-314 22-189 (431)
48 cd02127 PA_hPAP21_like PA_hPAP 98.6 2.6E-07 5.6E-12 83.4 10.2 88 376-463 21-116 (118)
49 PF06280 DUF1034: Fn3-like dom 98.6 6.3E-07 1.4E-11 80.5 12.4 82 656-738 7-112 (112)
50 cd02129 PA_hSPPL_like PA_hSPPL 98.6 4.7E-07 1E-11 81.2 10.6 90 360-454 19-113 (120)
51 cd02124 PA_PoS1_like PA_PoS1_l 98.6 8.9E-07 1.9E-11 81.2 12.7 95 363-458 28-124 (129)
52 cd02122 PA_GRAIL_like PA _GRAI 98.5 4.2E-07 9E-12 84.3 9.8 87 375-461 43-136 (138)
53 cd04816 PA_SaNapH_like PA_SaNa 98.5 3.6E-07 7.9E-12 83.4 9.1 83 376-458 29-117 (122)
54 cd04818 PA_subtilisin_1 PA_sub 98.5 6.3E-07 1.4E-11 81.4 9.9 86 375-460 26-115 (118)
55 cd02125 PA_VSR PA_VSR: Proteas 98.5 1.4E-06 3.1E-11 79.6 10.8 85 376-460 22-124 (127)
56 COG4934 Predicted protease [Po 98.5 1.8E-06 3.9E-11 102.1 14.3 93 233-328 289-395 (1174)
57 cd02126 PA_EDEM3_like PA_EDEM3 98.4 1.1E-06 2.5E-11 80.4 9.6 84 376-459 27-122 (126)
58 PF02225 PA: PA domain; Inter 98.4 3.7E-07 8E-12 80.3 6.1 76 378-453 21-101 (101)
59 cd02130 PA_ScAPY_like PA_ScAPY 98.4 1.8E-06 3.8E-11 78.9 9.5 85 377-461 32-120 (122)
60 cd00538 PA PA: Protease-associ 98.3 2.8E-06 6.2E-11 77.9 9.1 83 376-458 30-121 (126)
61 cd02132 PA_GO-like PA_GO-like: 98.3 4E-06 8.7E-11 78.2 9.6 82 376-459 48-135 (139)
62 cd04813 PA_1 PA_1: Protease-as 98.3 4.3E-06 9.4E-11 75.3 8.9 79 375-455 26-111 (117)
63 cd04817 PA_VapT_like PA_VapT_l 98.2 6.3E-06 1.4E-10 76.1 8.8 70 386-455 53-133 (139)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.1 1.4E-05 3.1E-10 75.8 9.6 83 376-458 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 97.7 0.0004 8.7E-09 63.8 11.9 90 360-457 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.2 0.0015 3.3E-08 60.5 7.9 74 386-459 36-130 (134)
67 PF14874 PapD-like: Flagellar- 96.9 0.033 7.2E-07 48.8 13.8 82 656-740 19-100 (102)
68 cd02128 PA_TfR PA_TfR: Proteas 96.1 0.014 3.1E-07 56.5 6.5 70 386-455 52-155 (183)
69 KOG3920 Uncharacterized conser 95.9 0.008 1.7E-07 55.0 3.9 102 361-467 64-175 (193)
70 cd04814 PA_M28_1 PA_M28_1: Pro 95.7 0.027 6E-07 52.3 6.5 63 360-424 19-100 (142)
71 KOG2442 Uncharacterized conser 95.6 0.039 8.5E-07 59.8 8.0 79 386-464 92-176 (541)
72 cd04820 PA_M28_1_1 PA_M28_1_1: 95.5 0.036 7.8E-07 51.2 6.4 63 361-425 22-97 (137)
73 cd04822 PA_M28_1_3 PA_M28_1_3: 94.8 0.073 1.6E-06 50.1 6.5 62 362-425 21-101 (151)
74 PF10633 NPCBM_assoc: NPCBM-as 94.5 0.22 4.7E-06 41.3 8.0 58 656-714 4-63 (78)
75 PF11614 FixG_C: IG-like fold 94.2 0.81 1.8E-05 41.2 11.8 82 658-740 32-116 (118)
76 cd02131 PA_hNAALADL2_like PA_h 92.9 0.14 3.1E-06 47.6 4.4 39 386-424 37-75 (153)
77 KOG4628 Predicted E3 ubiquitin 92.1 0.39 8.5E-06 51.0 7.0 78 377-454 63-148 (348)
78 PF06030 DUF916: Bacterial pro 92.0 1.4 3.1E-05 39.9 9.8 77 649-727 18-119 (121)
79 PF00345 PapD_N: Pili and flag 91.8 3.4 7.4E-05 37.3 12.3 71 655-727 12-89 (122)
80 cd02121 PA_GCPII_like PA_GCPII 91.1 0.29 6.3E-06 49.1 4.6 39 386-424 68-106 (220)
81 COG1470 Predicted membrane pro 88.0 4.7 0.0001 44.3 11.0 73 656-728 396-469 (513)
82 KOG1114 Tripeptidyl peptidase 86.7 0.46 1E-05 55.7 2.8 24 136-159 77-100 (1304)
83 cd04821 PA_M28_1_2 PA_M28_1_2: 85.4 3.9 8.4E-05 38.9 7.9 62 360-423 21-102 (157)
84 PF00635 Motile_Sperm: MSP (Ma 80.4 9.3 0.0002 33.4 8.1 53 658-713 19-71 (109)
85 TIGR02745 ccoG_rdxA_fixG cytoc 78.0 8.4 0.00018 43.0 8.4 55 658-713 347-401 (434)
86 PF07718 Coatamer_beta_C: Coat 75.7 25 0.00054 32.6 9.3 68 658-727 70-138 (140)
87 COG1470 Predicted membrane pro 71.8 55 0.0012 36.3 12.2 69 658-728 285-360 (513)
88 smart00635 BID_2 Bacterial Ig- 61.8 22 0.00048 29.4 5.7 40 686-730 4-43 (81)
89 PF00927 Transglut_C: Transglu 61.5 49 0.0011 28.9 8.2 57 656-714 14-79 (107)
90 PF07610 DUF1573: Protein of u 61.2 29 0.00062 25.3 5.4 44 663-709 2-45 (45)
91 PRK13203 ureB urease subunit b 54.2 38 0.00081 29.4 5.7 20 654-673 15-34 (102)
92 cd00407 Urease_beta Urease bet 53.6 38 0.00082 29.3 5.6 20 654-673 15-34 (101)
93 TIGR00192 urease_beta urease, 51.8 45 0.00097 28.9 5.7 19 655-673 16-34 (101)
94 PF07705 CARDB: CARDB; InterP 50.8 69 0.0015 27.1 7.2 54 656-712 18-72 (101)
95 PRK13202 ureB urease subunit b 46.1 73 0.0016 27.7 6.2 15 659-673 21-35 (104)
96 PRK13201 ureB urease subunit b 44.2 62 0.0013 29.4 5.7 19 655-673 16-34 (136)
97 PF05506 DUF756: Domain of unk 44.0 1E+02 0.0023 25.9 7.1 53 652-709 13-65 (89)
98 PRK13205 ureB urease subunit b 43.8 61 0.0013 30.1 5.7 20 654-673 15-34 (162)
99 PF00699 Urease_beta: Urease b 43.8 48 0.001 28.6 4.7 20 654-673 14-33 (100)
100 PRK15098 beta-D-glucoside gluc 43.5 61 0.0013 39.3 7.5 55 657-713 667-729 (765)
101 PRK15308 putative fimbrial pro 41.9 1.5E+02 0.0033 30.1 9.0 54 658-712 32-101 (234)
102 PF12690 BsuPI: Intracellular 41.3 50 0.0011 27.6 4.5 21 693-714 53-73 (82)
103 PRK13204 ureB urease subunit b 39.6 76 0.0017 29.6 5.7 21 653-673 37-57 (159)
104 PRK09918 putative fimbrial cha 38.8 1.5E+02 0.0032 30.2 8.4 56 653-711 34-94 (230)
105 COG0832 UreB Urea amidohydrola 37.9 1E+02 0.0022 26.6 5.7 21 653-673 14-34 (106)
106 PLN03080 Probable beta-xylosid 37.7 69 0.0015 38.9 6.8 53 658-711 685-744 (779)
107 PRK13198 ureB urease subunit b 36.5 92 0.002 29.1 5.7 21 653-673 42-62 (158)
108 PF08260 Kinin: Insect kinin p 32.8 20 0.00044 16.1 0.5 6 480-485 3-8 (8)
109 PF02845 CUE: CUE domain; Int 32.7 41 0.00089 24.0 2.3 25 540-564 5-29 (42)
110 PF13940 Ldr_toxin: Toxin Ldr, 31.4 37 0.00079 22.9 1.7 13 531-543 14-26 (35)
111 PF13598 DUF4139: Domain of un 31.2 1.8E+02 0.004 30.8 8.2 25 658-682 243-267 (317)
112 PF08821 CGGC: CGGC domain; I 29.6 2.1E+02 0.0046 25.2 6.8 45 233-279 31-76 (107)
113 PRK15019 CsdA-binding activato 29.0 51 0.0011 31.0 2.9 33 524-557 77-109 (147)
114 PRK13192 bifunctional urease s 28.8 1.2E+02 0.0026 29.8 5.4 21 653-673 123-143 (208)
115 TIGR03391 FeS_syn_CsdE cystein 27.8 56 0.0012 30.3 2.9 34 524-558 72-105 (138)
116 PRK11385 putativi pili assembl 25.3 2.3E+02 0.0049 29.0 7.1 56 653-711 36-103 (236)
117 PRK13986 urease subunit alpha; 25.2 1.5E+02 0.0033 29.5 5.4 22 652-673 118-139 (225)
118 PRK09296 cysteine desufuration 25.1 66 0.0014 29.8 2.9 33 524-557 67-99 (138)
119 COG0065 LeuC 3-isopropylmalate 24.9 1.1E+02 0.0023 33.4 4.8 60 475-543 354-413 (423)
120 PRK15233 putative fimbrial cha 24.4 5.5E+02 0.012 26.4 9.6 57 656-715 53-114 (246)
121 COG2166 sufE Cysteine desulfur 24.3 66 0.0014 30.0 2.7 31 526-557 74-104 (144)
122 PRK15188 fimbrial chaperone pr 24.2 7E+02 0.015 25.3 10.3 60 653-714 37-101 (228)
123 PRK15211 fimbrial chaperone pr 23.9 6.5E+02 0.014 25.5 10.1 58 654-714 33-96 (229)
124 PRK15218 fimbrial chaperone pr 23.8 4.1E+02 0.0089 26.9 8.6 58 654-714 29-96 (226)
125 COG3121 FimC P pilus assembly 23.3 3.3E+02 0.0071 27.7 7.9 60 654-714 38-102 (235)
126 PRK15295 fimbrial assembly cha 23.2 7E+02 0.015 25.2 10.2 58 652-712 28-92 (226)
127 PRK09926 putative chaperone pr 22.9 5.7E+02 0.012 26.2 9.6 57 653-712 35-101 (246)
128 PF02657 SufE: Fe-S metabolism 22.8 81 0.0018 28.7 3.0 33 525-558 59-91 (125)
129 PRK15299 fimbrial chaperone pr 22.6 6.2E+02 0.014 25.5 9.7 57 653-712 32-96 (227)
130 smart00546 CUE Domain that may 22.5 1.1E+02 0.0025 21.7 3.2 25 539-563 5-29 (43)
131 PF10731 Anophelin: Thrombin i 22.5 1E+02 0.0022 23.9 2.8 30 2-33 4-33 (65)
132 PF04255 DUF433: Protein of un 21.7 79 0.0017 24.2 2.3 39 522-560 10-54 (56)
133 TIGR01451 B_ant_repeat conserv 20.7 3.7E+02 0.0081 20.2 6.0 39 656-696 11-50 (53)
134 PF04744 Monooxygenase_B: Mono 20.3 3.7E+02 0.008 29.2 7.5 52 656-711 262-335 (381)
135 PRK15246 fimbrial assembly cha 20.2 4E+02 0.0087 27.1 7.7 56 653-711 20-85 (233)
136 PRK15249 fimbrial chaperone pr 20.1 3E+02 0.0066 28.3 6.9 57 652-711 37-104 (253)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-51 Score=438.51 Aligned_cols=289 Identities=57% Similarity=0.883 Sum_probs=250.1
Q ss_pred eccccCCCCCccCccCCCC--CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccc----cCcccc
Q 048043 113 LQLHTTHTPNFLGLHQNSG--FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAA----CNNKLI 186 (742)
Q Consensus 113 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f----~n~ki~ 186 (742)
+++++++++.++++....+ +|.++++|+||+|||||||||++||+|.++...+++..|++.|..+..+ +++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678888999999887444 4778999999999999999999999999999999999999999988776 899999
Q ss_pred ceeecCCCCC----------CCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHH
Q 048043 187 GARNFLQGST----------GEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSES 255 (742)
Q Consensus 187 ~~~~~~~~~~----------~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~ 255 (742)
+.++|..+.+ ..++.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++..+ +..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 9999987542 3456788999999999999997766555566667789999999999999998844 8889
Q ss_pred HHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCccee
Q 048043 256 RVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSI 335 (742)
Q Consensus 256 ~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~ 335 (742)
++++||++|++++++|||||||........+.+..++..+.++|+++|+||||+|+.....++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~----- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST----- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-----
Confidence 999999999999999999999987645567788888889999999999999999988888888999999999830
Q ss_pred EEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCe
Q 048043 336 VASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGI 415 (742)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~ 415 (742)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcc
Q 048043 416 GMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILK 495 (742)
Q Consensus 416 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 495 (742)
+|
T Consensus 236 ------------------------------------------------------------------------------~~ 237 (307)
T cd04852 236 ------------------------------------------------------------------------------LK 237 (307)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 46
Q ss_pred cceEecCCcEEeccCCCc-cCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 496 PDIIGPGVNILAAWPFSV-ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 496 PDI~APG~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
|||+|||.+|++++.... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 238 ~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 238 PDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred cceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 799999999999986422 112233468999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=6e-51 Score=450.52 Aligned_cols=300 Identities=20% Similarity=0.222 Sum_probs=217.7
Q ss_pred CCccCccC--CCCCcc--CCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCC--ccccccccCccccCccccceeecCCC
Q 048043 121 PNFLGLHQ--NSGFWK--DSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPA--KWKGKCEFKGAACNNKLIGARNFLQG 194 (742)
Q Consensus 121 ~~~~g~~~--~~~~~~--~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~--~~~g~~~~g~~f~n~ki~~~~~~~~~ 194 (742)
...|+++. +.++|+ .+.+|+||+|||||||||++||||.++-...... ..++....+.++ -.. +.+++|.++
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~-vdd-~~G~nfVd~ 370 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGN-VDD-EYGANFVNN 370 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCc-ccc-cccccccCC
Confidence 34566664 445665 4678999999999999999999998642110000 000100000000 001 223556654
Q ss_pred CCCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEE
Q 048043 195 STGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLS 273 (742)
Q Consensus 195 ~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn 273 (742)
. ..+.|..||||||||||||...+ ...+.||||+|+|+++|+++..| +..+++++||+||+++|++|||
T Consensus 371 ~--~~P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VIN 440 (639)
T PTZ00262 371 D--GGPMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMIN 440 (639)
T ss_pred C--CCCCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEE
Confidence 3 56789999999999999987422 22357999999999999998877 7889999999999999999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCC--------------CCC----CCCceEEecccCCccee
Q 048043 274 LSLGAASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST--------------SSN----EAPWILSVGASTTDRSI 335 (742)
Q Consensus 274 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVga~~~~~~~ 335 (742)
||||+.. +...+..++.+|.++|+++|+||||+|..... ++. ..+++|+|||...+.
T Consensus 441 mSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-- 515 (639)
T PTZ00262 441 GSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-- 515 (639)
T ss_pred eccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--
Confidence 9999762 34567788889999999999999999865321 121 235666666632110
Q ss_pred EEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCe
Q 048043 336 VASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGI 415 (742)
Q Consensus 336 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~ 415 (742)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcc
Q 048043 416 GMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILK 495 (742)
Q Consensus 416 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 495 (742)
.....++.||+||.. +
T Consensus 516 ---------------------------------------------------------~~~~s~s~~Snyg~~-------~ 531 (639)
T PTZ00262 516 ---------------------------------------------------------NNQYSLSPNSFYSAK-------Y 531 (639)
T ss_pred ---------------------------------------------------------CCcccccccccCCCC-------c
Confidence 000124456677632 3
Q ss_pred cceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCcccc
Q 048043 496 PDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVD 575 (742)
Q Consensus 496 PDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~ 575 (742)
+||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++...
T Consensus 532 VDIaAPG~dI~St~p~---------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~------ 596 (639)
T PTZ00262 532 CQLAAPGTNIYSTFPK---------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL------ 596 (639)
T ss_pred ceEEeCCCCeeeccCC---------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC------
Confidence 4999999999999987 7899999999999999999999999999999999999999999876321
Q ss_pred CCCCCCCCCccc-ccccCcCCcCCCCccc
Q 048043 576 QRLLPADMFAVG-AGHVNPSSANDPGLIY 603 (742)
Q Consensus 576 ~~~~~~~~~~~G-~G~vd~~~Al~~~lv~ 603 (742)
+..+| +|+||+++||+.++-+
T Consensus 597 -------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------CCccccCcEEcHHHHHHHHHhc
Confidence 12233 3899999999876644
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=3.2e-49 Score=408.60 Aligned_cols=242 Identities=29% Similarity=0.461 Sum_probs=200.2
Q ss_pred ccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhh
Q 048043 133 WKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTAT 212 (742)
Q Consensus 133 ~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAG 212 (742)
|+++++|+||+|||||||||.+||+|.+. ....+|... ....|..||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~---~~~~d~~gHGT~VAG 53 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV------------------------KERTNWTNE---KTLDDGLGHGTFVAG 53 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc------------------------ccccccCCC---CCCCCCCCcHHHHHH
Confidence 89999999999999999999999999742 001122222 345678899999999
Q ss_pred hhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHH
Q 048043 213 TAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIG 291 (742)
Q Consensus 213 iiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a 291 (742)
||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++++||++++++|||||||... +...++..+
T Consensus 54 iIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~~~~ 120 (255)
T cd07479 54 VIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPFVDK 120 (255)
T ss_pred HHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHHHHH
Confidence 9998731 137999999999999998876 66778999999999999999999999863 334567777
Q ss_pred HHHhhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecC
Q 048043 292 SFSAIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPG 369 (742)
Q Consensus 292 ~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (742)
+.++.++|++||+||||+|+... ..+...+++|+||+..
T Consensus 121 ~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~--------------------------------------- 161 (255)
T cd07479 121 VWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID--------------------------------------- 161 (255)
T ss_pred HHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec---------------------------------------
Confidence 77888999999999999997543 3466778899998831
Q ss_pred CCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHH
Q 048043 370 ANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 370 ~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 449 (742)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCC----CCCCCcccceEecCCcEEeccCCCccCCCCCccccee
Q 048043 450 KAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSI----ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNM 525 (742)
Q Consensus 450 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 525 (742)
..+.++.|||+|++. ...+++||||+|||.+|+++... +.|..
T Consensus 162 ------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------~~~~~ 208 (255)
T cd07479 162 ------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------GGCRA 208 (255)
T ss_pred ------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------CCeEE
Confidence 123678899999753 12578899999999999988765 67899
Q ss_pred eccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHcccccc
Q 048043 526 VAGTSMSCPHLSGVAALLKSAHP----DWSPAAIKSAIMTTADIV 566 (742)
Q Consensus 526 ~sGTSmAaP~VAG~aALl~q~~p----~~s~~~ik~~L~~TA~~~ 566 (742)
++|||||||||||++|||+|++| .++|.+||++|++||+++
T Consensus 209 ~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred eccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 99999999999999999999998 799999999999999986
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.4e-49 Score=412.50 Aligned_cols=270 Identities=26% Similarity=0.282 Sum_probs=204.9
Q ss_pred CCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhc
Q 048043 136 SNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAA 215 (742)
Q Consensus 136 ~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiia 215 (742)
|++|+||+|||||||||..||++.+-..+.++..+ .+... .....|..+|||||||||+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-------------------~~~~~--~~~~~d~~gHGT~vAgii~ 59 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-------------------NVLGD--LDGGSGGGDEGRAMLEIIH 59 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-------------------eeccc--cCCCCCCCchHHHHHHHHh
Confidence 57999999999999999998865432111111111 11111 1345678899999999995
Q ss_pred ccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCCC-CCCHHHHHHHH
Q 048043 216 GNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPF-FEDPLAIGSFS 294 (742)
Q Consensus 216 G~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~-~~~~~~~a~~~ 294 (742)
||||+|+|+.+|+. ...+++++||+|++++|++|||||||....+. ....+..++.+
T Consensus 60 ------------------GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~ 117 (275)
T cd05562 60 ------------------DIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDE 117 (275)
T ss_pred ------------------ccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHHH
Confidence 99999999998874 34788999999999999999999999865443 34467778888
Q ss_pred hhcC-CcEEEEecCCCCCCCC-CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCC
Q 048043 295 AIQK-EIFVSCSAGNEGPNPS-TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANG 372 (742)
Q Consensus 295 a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (742)
+.++ |+++|+||||+|.... ..++..|++|+|||...........
T Consensus 118 a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------------------------- 164 (275)
T cd05562 118 VVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------------------------- 164 (275)
T ss_pred HHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------------------------
Confidence 8887 9999999999998643 4468899999999964332110000
Q ss_pred CCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHH
Q 048043 373 NVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 373 ~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
|. +
T Consensus 165 ------~~---------------------------------------------~-------------------------- 167 (275)
T cd05562 165 ------DP---------------------------------------------A-------------------------- 167 (275)
T ss_pred ------cc---------------------------------------------c--------------------------
Confidence 00 0
Q ss_pred HhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCC-cEEeccCCCccCCCCCcccceeeccccc
Q 048043 453 INSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGV-NILAAWPFSVENKTNTKSTFNMVAGTSM 531 (742)
Q Consensus 453 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~y~~~sGTSm 531 (742)
. .......+.|+++||+. +++.||||+|||+ ++.+.+.. +.|..++||||
T Consensus 168 ----~--------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~sGTS~ 218 (275)
T cd05562 168 ----P--------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNFFGTSA 218 (275)
T ss_pred ----c--------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------CceeecccchH
Confidence 0 00011345678889987 5789999999975 44555544 68999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 532 SCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 532 AaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+||+
T Consensus 219 AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 219 AAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 9999999999999999999999999999999998742 3456789999999999986
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.9e-48 Score=420.82 Aligned_cols=310 Identities=28% Similarity=0.371 Sum_probs=236.7
Q ss_pred CCccCCC-CCCccEEEEEcccCCCCCCCCCCCCCCCCCC-----ccccccccCcc-ccCccccceeecCCCCCCCC-CCC
Q 048043 131 GFWKDSN-LGKGVIIGVMDTGITPGHPSFSDEGMPPPPA-----KWKGKCEFKGA-ACNNKLIGARNFLQGSTGEP-PLD 202 (742)
Q Consensus 131 ~~~~~~~-~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~-----~~~g~~~~g~~-f~n~ki~~~~~~~~~~~~~~-~~d 202 (742)
++|+++. +|+||+|||||||||++||+|.+....+... .++..+..+.+ |++.+++..++|.+..+... ..+
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDD 80 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCCCC
Confidence 3788887 9999999999999999999999764443211 22222222222 37788888889887753333 457
Q ss_pred CCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEecc--CC-CCHHHHHHHHHHhhhCCCcEEEEccCCC
Q 048043 203 DEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDF--DG-CSESRVYAAMDTAIDDGVDVLSLSLGAA 279 (742)
Q Consensus 203 ~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~ 279 (742)
..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. .+ .....++++++++++++++|||||||..
T Consensus 81 ~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~ 155 (346)
T cd07475 81 GSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST 155 (346)
T ss_pred CCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 89999999999999854321 1234689999999999999973 33 7778899999999999999999999987
Q ss_pred CCC-CCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC----------------CCCCCceEEecccCCcceeEEEEEeC
Q 048043 280 SVP-FFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS----------------SNEAPWILSVGASTTDRSIVASVELG 342 (742)
Q Consensus 280 ~~~-~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~~~ 342 (742)
... .....+..++.++.++|+++|+||||+|...... +...+++|+||+...
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~----------- 224 (346)
T cd07475 156 AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK----------- 224 (346)
T ss_pred CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc-----------
Confidence 532 4556777888889999999999999998654321 223445555555310
Q ss_pred CCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEecc
Q 048043 343 NQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMND 422 (742)
Q Consensus 343 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~ 422 (742)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecC
Q 048043 423 KLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPG 502 (742)
Q Consensus 423 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 502 (742)
.......+.++.||+|||+. ..++||||+|||
T Consensus 225 ----------------------------------------------~~~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG 256 (346)
T cd07475 225 ----------------------------------------------KVPNPNGGQMSGFSSWGPTP--DLDLKPDITAPG 256 (346)
T ss_pred ----------------------------------------------ccCCCCCCccCCCcCCCCCc--ccCcCCeEEeCC
Confidence 00012335788999999998 679999999999
Q ss_pred CcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHcccccccCCCCccc
Q 048043 503 VNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSA----HPDWSPAA----IKSAIMTTADIVSLDGKPIV 574 (742)
Q Consensus 503 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~s~~~----ik~~L~~TA~~~~~~g~~~~ 574 (742)
.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+....
T Consensus 257 ~~i~s~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~----- 322 (346)
T cd07475 257 GNIYSTVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS----- 322 (346)
T ss_pred CCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----
Confidence 999998876 78999999999999999999999997 78999876 788999999853211
Q ss_pred cCCCCCCCCCcccccccCcCCcCC
Q 048043 575 DQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 575 ~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
.....++.+.++|+|+||+.+||+
T Consensus 323 ~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCCCccCCccccCcchhcHHHhhC
Confidence 112456777889999999999985
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=2.4e-48 Score=431.17 Aligned_cols=403 Identities=25% Similarity=0.258 Sum_probs=247.6
Q ss_pred CCCCccEEEEEcccCCCCCCCCCC-CCCCCCCCccccccccCccccCccccceeecCC--------C---CCCCCCCCCC
Q 048043 137 NLGKGVIIGVMDTGITPGHPSFSD-EGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQ--------G---STGEPPLDDE 204 (742)
Q Consensus 137 ~~G~gV~VaVIDtGid~~Hp~f~~-~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~--------~---~~~~~~~d~~ 204 (742)
++|+||+|||||||||+.||+|++ ++.+|+...|++..+.+..- ....+...+.. . .+.....|+.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~ 78 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP--GGYYGGGEYTEEIINAALASDNPYDIVPSRDEN 78 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC--ccccCceEEeHHHHHHHHhcCCccccCcCCCCC
Confidence 489999999999999999999994 67889999999988754321 11111111111 0 1123457899
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-----------CCHHHHHHHHHHhhhC-----C
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-----------CSESRVYAAMDTAIDD-----G 268 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~-----g 268 (742)
||||||||||||+..+ ...+.||||+|+|+++|++...+ +..++++.||+|+++. .
T Consensus 79 GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~ 150 (455)
T cd07478 79 GHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNK 150 (455)
T ss_pred CchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999998532 23358999999999999998765 4678999999999875 4
Q ss_pred CcEEEEccCCCCC-CCCCCHHHHHHHHhhcC-CcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCee
Q 048043 269 VDVLSLSLGAASV-PFFEDPLAIGSFSAIQK-EIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAV 346 (742)
Q Consensus 269 ~~VIn~SlG~~~~-~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~ 346 (742)
+.|||||||.... ....+.++.++..+..+ |++||+||||+|....+..+.. . .........+.++.++.
T Consensus 151 p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~----~----~~~~~~~ie~~v~~~~~ 222 (455)
T cd07478 151 PLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGI----V----PNGETKTVELNVGEGEK 222 (455)
T ss_pred CeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeee----c----cCCceEEEEEEECCCCc
Confidence 6799999998753 34566788787777766 9999999999998665544210 0 00011122333333333
Q ss_pred EeeeeccCCCCCCCCceeEEecCCCCCCC--CCCcCCCC--CC-CCccceEEEeecCCcchh--h--hhHHHhhcCCeEE
Q 048043 347 YDGEALFQPKDFPSKQFPLIYPGANGNVS--SAQCSPGS--LS-SNIRGKLVLCERGGGERT--K--KGQVVKDAGGIGM 417 (742)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~--~~-~~~~g~iv~~~~g~~~~~--~--~~~~~~~~g~~~~ 417 (742)
-....+|...+ ..+.+......+... ...-.... .. .....++.+..+...... + ..+.-....+.+.
T Consensus 223 ~~~~eiW~~~~---d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~ 299 (455)
T cd07478 223 GFNLEIWGDFP---DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWK 299 (455)
T ss_pred ceEEEEecCCC---CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceE
Confidence 22233333221 122222222111100 00000000 00 001112222211111100 0 0000112233444
Q ss_pred EEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEecee-----Eec-c-cCCCccccccCCCCCCCC
Q 048043 418 ILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGT-----VIG-K-KSTPELASFSSRGPSIAS 490 (742)
Q Consensus 418 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~-----~~~-~-~~~~~~a~fSs~Gp~~~~ 490 (742)
|.+........ .-..|+|.-.+...+..++ ..++..+++.+++ .++ . ...+.++.||||||+.
T Consensus 300 i~~~~~~~~~g--~~~~Wlp~~~~~~~~t~f~------~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~-- 369 (455)
T cd07478 300 IRLTGVSITDG--RFDAWLPSRGLLSENTRFL------EPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR-- 369 (455)
T ss_pred EEEEeccCCCc--eEEEEecCcCcCCCCCEee------cCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--
Confidence 43332211000 0123455443333222111 1233445555533 111 1 2345699999999998
Q ss_pred CCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHHcccc
Q 048043 491 PGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAH------PDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 491 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~~s~~~ik~~L~~TA~ 564 (742)
++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.+++++||++|++||+
T Consensus 370 ~~~~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~ 440 (455)
T cd07478 370 DGRIKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440 (455)
T ss_pred CCCcCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCc
Confidence 689999999999999999987 789999999999999999999999875 56799999999999999
Q ss_pred cccCCCCccccCCCCCCCCCccccc
Q 048043 565 IVSLDGKPIVDQRLLPADMFAVGAG 589 (742)
Q Consensus 565 ~~~~~g~~~~~~~~~~~~~~~~G~G 589 (742)
++.. ..+++.+||||
T Consensus 441 ~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 441 RRPG----------DEYPNPEWGYG 455 (455)
T ss_pred cCCC----------CCCCCCCCCCC
Confidence 8742 34678899998
No 7
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-48 Score=409.63 Aligned_cols=285 Identities=29% Similarity=0.330 Sum_probs=191.0
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccc
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNF 218 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~ 218 (742)
|+||+|||||||||.+||+|.++... .|+..++ +...+....++..+. ...+.|.+||||||||||||+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d-----~~~~~~~g~d~~~~~-~~~~~D~~gHGThvAGiiag~~ 70 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFD-----YKAYLLPGMDKWGGF-YVIMYDFFSHGTSCASVAAGRG 70 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccC-----cCCCccCCcCCCCCc-cCCCCCccccchhHHHHHhccC
Confidence 89999999999999999999754211 1111110 011122222332221 1246789999999999999985
Q ss_pred cCCCccccc-CCcceeeecCcceEEEEEEeccCC-CCHHHHHH-------HHHHh--hhCCCcEEEEccCCCCCCCC---
Q 048043 219 VNGANVFGQ-ADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYA-------AMDTA--IDDGVDVLSLSLGAASVPFF--- 284 (742)
Q Consensus 219 ~~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~~VIn~SlG~~~~~~~--- 284 (742)
....+..++ ....+.||||+|+|+.+|++...+ .....+.+ +++|. .+++++|||||||.....+.
T Consensus 71 ~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~ 150 (311)
T cd07497 71 KMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYA 150 (311)
T ss_pred cccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccc
Confidence 322221111 123468999999999999997543 32222332 34444 36799999999998642211
Q ss_pred --CCHHHHHHHH-hhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCC
Q 048043 285 --EDPLAIGSFS-AIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFP 359 (742)
Q Consensus 285 --~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 359 (742)
.+..+..... +.++|+++|+||||+|+... ..++..+++|+|||++.....+.
T Consensus 151 ~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~---------------------- 208 (311)
T cd07497 151 PGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF---------------------- 208 (311)
T ss_pred cCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch----------------------
Confidence 1223332222 24899999999999998643 45678899999999642210000
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAV 439 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~ 439 (742)
+...
T Consensus 209 ---~~~~------------------------------------------------------------------------- 212 (311)
T cd07497 209 ---YLFG------------------------------------------------------------------------- 212 (311)
T ss_pred ---hhhc-------------------------------------------------------------------------
Confidence 0000
Q ss_pred EEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCcc-CCCC
Q 048043 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVE-NKTN 518 (742)
Q Consensus 440 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~-~~~~ 518 (742)
......+.++.||||||+. ++++||||+|||++|+++.+.... ....
T Consensus 213 ------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~~~ 260 (311)
T cd07497 213 ------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGALD 260 (311)
T ss_pred ------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcccC
Confidence 0012235789999999998 689999999999999998765321 1111
Q ss_pred CcccceeeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHccc
Q 048043 519 TKSTFNMVAGTSMSCPHLSGVAALLKSAHP------DWSPAAIKSAIMTTA 563 (742)
Q Consensus 519 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~s~~~ik~~L~~TA 563 (742)
....|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 261 ~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 261 GNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 224799999999999999999999999886 589999999999997
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.4e-47 Score=404.84 Aligned_cols=287 Identities=33% Similarity=0.469 Sum_probs=226.8
Q ss_pred CCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCC--------CCCCCC
Q 048043 130 SGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGS--------TGEPPL 201 (742)
Q Consensus 130 ~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~--------~~~~~~ 201 (742)
+.+|+.+++|+||+|||||+|||++||+|.++-.+. .++.+.++|..+. ....+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~-----------------~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPG-----------------CKVAGGYDFVGDDYDGTNPPVPDDDPM 65 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCC-----------------ceeccccccCCcccccccCCCCCCCCC
Confidence 468999999999999999999999999998642111 1111222222110 123556
Q ss_pred CCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 202 DDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 202 d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
|..+|||||||||+|...+ ..+.||||+|+|+.+|++...+ ...+.+++++++|++++++|||||||...
T Consensus 66 d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 66 DCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 7799999999999988532 2358999999999999998766 67778999999999999999999999864
Q ss_pred CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCC
Q 048043 281 VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKD 357 (742)
Q Consensus 281 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 357 (742)
. +....+...+.++.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 137 ~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------- 188 (312)
T cd07489 137 G-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------- 188 (312)
T ss_pred C-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------
Confidence 3 33467777788889999999999999987643 3356678888888721
Q ss_pred CCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCcccc
Q 048043 358 FPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLP 437 (742)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p 437 (742)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCC
Q 048043 438 AVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKT 517 (742)
Q Consensus 438 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 517 (742)
+.||+|||+. +.+.||||+|||++++++++...
T Consensus 189 -----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~---- 221 (312)
T cd07489 189 -----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG---- 221 (312)
T ss_pred -----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC----
Confidence 4689999998 46899999999999999988732
Q ss_pred CCcccceeeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 518 NTKSTFNMVAGTSMSCPHLSGVAALLKSAH-PDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 518 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
+.|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+..... ...++..++|+|+||+++|
T Consensus 222 ---~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~~a 296 (312)
T cd07489 222 ---GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAYKA 296 (312)
T ss_pred ---CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHHHH
Confidence 459999999999999999999999999 9999999999999999987544321111 1135678999999999999
Q ss_pred CCCCcc
Q 048043 597 NDPGLI 602 (742)
Q Consensus 597 l~~~lv 602 (742)
++..-.
T Consensus 297 ~~~~~~ 302 (312)
T cd07489 297 LYATTT 302 (312)
T ss_pred hcCCcc
Confidence 996443
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.2e-46 Score=391.08 Aligned_cols=247 Identities=26% Similarity=0.331 Sum_probs=204.6
Q ss_pred CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhh
Q 048043 132 FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 132 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVA 211 (742)
+|..+++|+||+|||||+|||.+||+|.+........ +... .....|..+||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~----------------------~~~~--~~~~~~~~gHGT~VA 57 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT----------------------YAAA--ACQDGGASAHGTHVA 57 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC----------------------cccc--CCCCCCCCCcHHHHH
Confidence 7999999999999999999999999998642221110 1000 134567889999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCCC-CCCCCHH
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPL 288 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~-~~~~~~~ 288 (742)
|||+|+... .+.||||+|+|+.+|++...+ .+..++++||+||+++|++|||||||.... ......+
T Consensus 58 gii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l 127 (267)
T cd07476 58 SLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPIL 127 (267)
T ss_pred HHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHH
Confidence 999987421 247999999999999997654 447789999999999999999999997642 3345567
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEec
Q 048043 289 AIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYP 368 (742)
Q Consensus 289 ~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 368 (742)
..++..+.++|+++|+||||+|.....++...|++|+||+...
T Consensus 128 ~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------- 170 (267)
T cd07476 128 ANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD------------------------------------- 170 (267)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC-------------------------------------
Confidence 8888889999999999999999887788888999999998421
Q ss_pred CCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHH
Q 048043 369 GANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGES 448 (742)
Q Consensus 369 ~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 448 (742)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeecc
Q 048043 449 IKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAG 528 (742)
Q Consensus 449 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 528 (742)
.+.++.||+||+.. .||||+|||.+|+++.+. +.|..++|
T Consensus 171 --------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---------~~~~~~sG 210 (267)
T cd07476 171 --------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---------GEVVRRSG 210 (267)
T ss_pred --------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC---------CCeEEecc
Confidence 12456799999864 478999999999999887 78999999
Q ss_pred ccchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHcccccccCC
Q 048043 529 TSMSCPHLSGVAALLKSAHPD----WSPAAIKSAIMTTADIVSLD 569 (742)
Q Consensus 529 TSmAaP~VAG~aALl~q~~p~----~s~~~ik~~L~~TA~~~~~~ 569 (742)
||||||||||++|||+|.+|. ++|++||++|++||+++...
T Consensus 211 TS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 211 TSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999999999999999999887 89999999999999988543
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-45 Score=391.03 Aligned_cols=278 Identities=42% Similarity=0.623 Sum_probs=215.8
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-------------CCCCCCCCC
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-------------GEPPLDDEG 205 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-------------~~~~~d~~g 205 (742)
|+||+|||||+|||++||+|.+... .+.++...++|..... .....|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999985321 2233444444443321 012345889
Q ss_pred CchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCC
Q 048043 206 HGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFF 284 (742)
Q Consensus 206 HGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~ 284 (742)
|||||||+|+|...+ ...+.|+||+|+|+.+|++...+ +...+++++|+|+++++++|||||||..... .
T Consensus 64 HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~ 134 (295)
T cd07474 64 HGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-P 134 (295)
T ss_pred cHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-C
Confidence 999999999987432 23358999999999999998554 7888999999999999999999999976432 4
Q ss_pred CCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC--CCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCc
Q 048043 285 EDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS--SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQ 362 (742)
Q Consensus 285 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (742)
.+.+..++.++.++|+++|+||||+|...... +...+++|+||+.....
T Consensus 135 ~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------------- 185 (295)
T cd07474 135 DDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------------- 185 (295)
T ss_pred CCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------------
Confidence 56778888899999999999999998765443 56789999999853100
Q ss_pred eeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEe
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVS 442 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 442 (742)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCC-CCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcc
Q 048043 443 YAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSR-GPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKS 521 (742)
Q Consensus 443 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 521 (742)
.........|+++ |++. ..++||||+|||.+|.+++.... .
T Consensus 186 -----------------------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~-------~ 227 (295)
T cd07474 186 -----------------------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG-------T 227 (295)
T ss_pred -----------------------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-------C
Confidence 0001133344555 4544 57899999999999999987632 5
Q ss_pred cceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCc
Q 048043 522 TFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSA 596 (742)
Q Consensus 522 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A 596 (742)
.|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 228 ~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 228 GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 78999999999999999999999999999999999999999998765432 223457899999999887
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-46 Score=379.23 Aligned_cols=234 Identities=29% Similarity=0.405 Sum_probs=193.4
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCC
Q 048043 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNG 221 (742)
Q Consensus 142 V~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~ 221 (742)
|+|||||||||.+||+|+++. +...++.. ....|..+|||||||||+|+...
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------~~~~~~~~----~~~~~~~~HGT~vAgiia~~~~~- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------IARLFFAG----PGAPAPSAHGTAVASLLAGAGAQ- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------cccccCCC----CCCCCCCCCHHHHHHHHhCCCCC-
Confidence 789999999999999997531 11111111 23557889999999999987421
Q ss_pred CcccccCCcceeeecCcceEEEEEEeccCC----CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhc
Q 048043 222 ANVFGQADGTAVGIAPLAHLAIYKVCDFDG----CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ 297 (742)
Q Consensus 222 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~ 297 (742)
. .|+||+|+|+.+|++...+ ++..++++||+||+++|++|||||||+.. ...+..++.++.+
T Consensus 53 ---------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~~ 118 (239)
T cd05561 53 ---------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAAA 118 (239)
T ss_pred ---------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHHH
Confidence 1 5999999999999998642 67788999999999999999999999753 3467777788999
Q ss_pred CCcEEEEecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCC
Q 048043 298 KEIFVSCSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSS 376 (742)
Q Consensus 298 ~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (742)
+|+++|+||||+|... ..++...+++|+||+..
T Consensus 119 ~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~---------------------------------------------- 152 (239)
T cd05561 119 RGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD---------------------------------------------- 152 (239)
T ss_pred CCCEEEEecCCCCCCCCccCcccCCCceEEEeec----------------------------------------------
Confidence 9999999999999763 45677788999998732
Q ss_pred CCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcC
Q 048043 377 AQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINST 456 (742)
Q Consensus 377 ~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 456 (742)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHH
Q 048043 457 SSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHL 536 (742)
Q Consensus 457 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~V 536 (742)
..+.+++||++|+.. ||+|||.+|+++.+. +.|..++|||||||||
T Consensus 153 -----------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~AaP~v 198 (239)
T cd05561 153 -----------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAAPFV 198 (239)
T ss_pred -----------------CCCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHHHHH
Confidence 123567899999876 999999999998776 7899999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCccccc
Q 048043 537 SGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAG 589 (742)
Q Consensus 537 AG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 589 (742)
||++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 199 aG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 199 TAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 999999999999 9999999999999998743 3456789998
No 12
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.3e-45 Score=378.66 Aligned_cols=242 Identities=34% Similarity=0.479 Sum_probs=197.0
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCC-CCCCCCchhhhhhhccccc
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPP-LDDEGHGTHTATTAAGNFV 219 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~-~d~~gHGThVAGiiaG~~~ 219 (742)
||+|||||||||++||+|...... .+.++.+.++|.+.. ... .|..+|||||||||+|+..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~----------------~~~~i~~~~~~~~~~--~~~~~~~~~HGT~vagiia~~~~ 62 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF----------------KNLRILGEYDFVDNS--NNTNYTDDDHGTAVLSTMAGYTP 62 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc----------------cCCceeeeecCccCC--CCCCCCCCCchhhhheeeeeCCC
Confidence 799999999999999999421000 234566677777653 223 6788999999999998742
Q ss_pred CCCcccccCCcceeeecCcceEEEEEEeccCC---CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCC------------
Q 048043 220 NGANVFGQADGTAVGIAPLAHLAIYKVCDFDG---CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFF------------ 284 (742)
Q Consensus 220 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~------------ 284 (742)
+.+.||||+|+|+.+|+..... .....++.|++|+.+++++|||||||.......
T Consensus 63 ----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~ 132 (261)
T cd07493 63 ----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGK 132 (261)
T ss_pred ----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccccccc
Confidence 2358999999999999876433 345678999999999999999999998642211
Q ss_pred CCHHHHHHHHhhcCCcEEEEecCCCCCC---CCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCC
Q 048043 285 EDPLAIGSFSAIQKEIFVSCSAGNEGPN---PSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSK 361 (742)
Q Consensus 285 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 361 (742)
...+..++..+.++|+++|+||||+|.. ...++...+++|+||+..
T Consensus 133 ~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------------------- 181 (261)
T cd07493 133 TSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------------------- 181 (261)
T ss_pred chHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-------------------------------
Confidence 2356777788899999999999999987 355677889999999831
Q ss_pred ceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEE
Q 048043 362 QFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHV 441 (742)
Q Consensus 362 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i 441 (742)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcc
Q 048043 442 SYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKS 521 (742)
Q Consensus 442 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 521 (742)
..+.++.||++||+. +++.||||+|||.++++.... +
T Consensus 182 --------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~---------~ 218 (261)
T cd07493 182 --------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD---------G 218 (261)
T ss_pred --------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---------C
Confidence 112578899999987 689999999999999986555 6
Q ss_pred cceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 522 TFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 522 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 219 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 219 NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999985
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.3e-44 Score=377.73 Aligned_cols=246 Identities=35% Similarity=0.473 Sum_probs=195.8
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceee-cCCCCCCCCCCCCCCCchhhhhhhccc
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARN-FLQGSTGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~-~~~~~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
|+||+|||||+|||++||+|.+.-.... .+... ..+. +....+...+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~~----~~~~~-----------~~~~~~d~~~~~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGWG----GGSAD-----------HDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccccC----CCCcc-----------cccccccCCCCCCCCCCCCCchhhhhhheeec
Confidence 8999999999999999999986411000 00000 0011 111111245668899999999999987
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh------------CCCcEEEEccCCCCCCCCC
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID------------DGVDVLSLSLGAASVPFFE 285 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~~VIn~SlG~~~~~~~~ 285 (742)
... +...||||+|+|+.+|++...++...+++++++|+++ ++++|||||||.... ..
T Consensus 66 ~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~--~~ 134 (264)
T cd07481 66 DGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG--DN 134 (264)
T ss_pred CCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--Cc
Confidence 421 1127999999999999998877888899999999875 789999999998743 34
Q ss_pred CHHHHHHHHhhcCCcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCc
Q 048043 286 DPLAIGSFSAIQKEIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQ 362 (742)
Q Consensus 286 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 362 (742)
..+..++..+.++|++||+||||++.+.. .++...+++|+||+..
T Consensus 135 ~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~-------------------------------- 182 (264)
T cd07481 135 EWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD-------------------------------- 182 (264)
T ss_pred hHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC--------------------------------
Confidence 55666777888899999999999986643 2567788999998842
Q ss_pred eeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEe
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVS 442 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 442 (742)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCccc
Q 048043 443 YAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKST 522 (742)
Q Consensus 443 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 522 (742)
..+.++.||++||.. .++.||||+|||.+|.++++. +.
T Consensus 183 -------------------------------~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~---------~~ 220 (264)
T cd07481 183 -------------------------------RNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG---------GG 220 (264)
T ss_pred -------------------------------CCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC---------Cc
Confidence 123678899999998 579999999999999999887 78
Q ss_pred ceeeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHcccc
Q 048043 523 FNMVAGTSMSCPHLSGVAALLKSAHPD--WSPAAIKSAIMTTAD 564 (742)
Q Consensus 523 y~~~sGTSmAaP~VAG~aALl~q~~p~--~s~~~ik~~L~~TA~ 564 (742)
|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 221 ~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 221 YGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999 999999999999985
No 14
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1e-44 Score=382.65 Aligned_cols=258 Identities=26% Similarity=0.356 Sum_probs=186.9
Q ss_pred CccEEEEEcccCCCCCCCCCCCCCCCCCC-ccccccccCccccCccccceeecCCCC---------------------CC
Q 048043 140 KGVIIGVMDTGITPGHPSFSDEGMPPPPA-KWKGKCEFKGAACNNKLIGARNFLQGS---------------------TG 197 (742)
Q Consensus 140 ~gV~VaVIDtGid~~Hp~f~~~g~~~~~~-~~~g~~~~g~~f~n~ki~~~~~~~~~~---------------------~~ 197 (742)
++|+|||||||||++||+|+++....... ..++..+.+.+|.. + +.+++|.... +.
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDV 78 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-c-ccCeeccCCcccccccccCcccccccccccccc
Confidence 68999999999999999998642111000 01111112222210 0 2223333210 12
Q ss_pred CCCCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccC
Q 048043 198 EPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLG 277 (742)
Q Consensus 198 ~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG 277 (742)
..+.+..+|||||||||+|...+ ..| +.||||+|+|+.+|++........++++||+||+++|++|||||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n-------~~g-~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G 150 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDN-------GIG-IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFG 150 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCC-------CCc-eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 23446889999999999987422 122 5799999999999998654467788999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCC---CC--------CCCCceEEecccCCcceeEEEEEeCCCee
Q 048043 278 AASVPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPST---SS--------NEAPWILSVGASTTDRSIVASVELGNQAV 346 (742)
Q Consensus 278 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~~~~~g~~ 346 (742)
..... ....+..++..+.++|+++|+||||+|.+... ++ ...+++|+||+....
T Consensus 151 ~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------------- 215 (291)
T cd07483 151 KSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------------- 215 (291)
T ss_pred CCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------------
Confidence 75322 23456777778899999999999999865321 11 123455666653210
Q ss_pred EeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC
Q 048043 347 YDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG 426 (742)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~ 426 (742)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEE
Q 048043 427 YSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNIL 506 (742)
Q Consensus 427 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 506 (742)
.....++.||++|+. +|||+|||.+|+
T Consensus 216 ----------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG~~i~ 242 (291)
T cd07483 216 ----------------------------------------------YENNLVANFSNYGKK-------NVDVFAPGERIY 242 (291)
T ss_pred ----------------------------------------------CCcccccccCCCCCC-------ceEEEeCCCCeE
Confidence 011246889999974 459999999999
Q ss_pred eccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 507 AAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 507 sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 243 s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 243 STTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99877 78999999999999999999999999999999999999999984
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3.2e-44 Score=385.88 Aligned_cols=220 Identities=29% Similarity=0.368 Sum_probs=165.6
Q ss_pred CCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC---CCHHHHHHHHHHhhhCCCcEEEEccC
Q 048043 201 LDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG---CSESRVYAAMDTAIDDGVDVLSLSLG 277 (742)
Q Consensus 201 ~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~~VIn~SlG 277 (742)
.|+.+|||||||||||+..+ ...+.||||+|+|+++|+++... ....++++||++|++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999997422 23358999999999999986542 23457999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHH-hhcCCcEEEEecCCCCCCCCCC--CC-CCCceEEecccCCcceeEEEEEeCCCeeEeeeecc
Q 048043 278 AASVPFFEDPLAIGSFS-AIQKEIFVSCSAGNEGPNPSTS--SN-EAPWILSVGASTTDRSIVASVELGNQAVYDGEALF 353 (742)
Q Consensus 278 ~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~ 353 (742)
..........+...+.+ +.++|+++|+||||+|+...+. ++ ..+++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 87532222234444433 4568999999999999876654 33 57899999995211100000
Q ss_pred CCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCC
Q 048043 354 QPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADP 433 (742)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~ 433 (742)
|.
T Consensus 319 ---------y~--------------------------------------------------------------------- 320 (412)
T cd04857 319 ---------YS--------------------------------------------------------------------- 320 (412)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCc
Q 048043 434 HLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSV 513 (742)
Q Consensus 434 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 513 (742)
......+.++.||||||+. +|++||||+|||+.|.+. +...
T Consensus 321 ------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~-p~~~ 361 (412)
T cd04857 321 ------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASV-PNWT 361 (412)
T ss_pred ------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEc-ccCC
Confidence 0001134688999999998 799999999999999875 2211
Q ss_pred cCCCCCcccceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccc
Q 048043 514 ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIV 566 (742)
Q Consensus 514 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~ 566 (742)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999985 578999999999999999864
No 16
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-45 Score=375.51 Aligned_cols=330 Identities=28% Similarity=0.410 Sum_probs=254.7
Q ss_pred CCceEEEEECCCCCCCCcchhccchHHHHHhhccccccc--CCCCCC------------ceEEEE--cc-eeeEEEEEcC
Q 048043 29 SLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISS--SINNQP------------RMLYCY--KN-VITGFAAKLT 91 (742)
Q Consensus 29 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~------------~~~~~y--~~-~~~g~s~~~~ 91 (742)
.+.+|||.|+... .... .+.|.+|++++.+..... .+.... .+.+.| .. +|+|+.-.++
T Consensus 79 ~~~~YiV~f~~~~---~q~~-~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft 154 (501)
T KOG1153|consen 79 LPSRYIVVFKPDA---SQQK-ISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFT 154 (501)
T ss_pred cccceEEEeCCCc---cHHH-HHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccc
Confidence 4679999999655 3333 556666666544322110 001000 133333 33 7888888999
Q ss_pred HHHHHHhhcCCCeEEEEeceeecccc-----CCCCCccCccCCCC-------Ccc----CCCCCCccEEEEEcccCCCCC
Q 048043 92 AEQAKAMETKEGFISAHVEKTLQLHT-----THTPNFLGLHQNSG-------FWK----DSNLGKGVIIGVMDTGITPGH 155 (742)
Q Consensus 92 ~~~i~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~~----~~~~G~gV~VaVIDtGid~~H 155 (742)
.+-+..++..|-++.++++...+... .+....||+.++.. .|- .-..|+||..+|+||||+.+|
T Consensus 155 ~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H 234 (501)
T KOG1153|consen 155 GESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEH 234 (501)
T ss_pred cceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccc
Confidence 99999999999999999987766543 34444567655221 121 123799999999999999999
Q ss_pred CCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCCCcccccCCcceeee
Q 048043 156 PSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGI 235 (742)
Q Consensus 156 p~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~Gv 235 (742)
|||.++ +.| |.| +... ....|++||||||||+|+++. .||
T Consensus 235 ~dFegR------a~w-Ga~----------------i~~~---~~~~D~nGHGTH~AG~I~sKt--------------~Gv 274 (501)
T KOG1153|consen 235 PDFEGR------AIW-GAT----------------IPPK---DGDEDCNGHGTHVAGLIGSKT--------------FGV 274 (501)
T ss_pred cccccc------eec-ccc----------------cCCC---CcccccCCCcceeeeeeeccc--------------ccc
Confidence 999976 233 111 1111 346789999999999999884 799
Q ss_pred cCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC---------CCcEEEEccCCCCCCCCCCHHHHHHHHhhcCCcEEEEe
Q 048043 236 APLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD---------GVDVLSLSLGAASVPFFEDPLAIGSFSAIQKEIFVSCS 305 (742)
Q Consensus 236 AP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~A 305 (742)
|.+++|+++||++++| ++.+++++++|++++. +..|.|||+|+..+ -++..|+..|.+.|+.+++|
T Consensus 275 AK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~A~~~Gi~fa~A 350 (501)
T KOG1153|consen 275 AKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNAASERGIHFAVA 350 (501)
T ss_pred ccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHHHhhcCeEEEEc
Confidence 9999999999999999 9999999999999986 46799999999754 46777778999999999999
Q ss_pred cCCCCCCCCC-CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCC
Q 048043 306 AGNEGPNPST-SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSL 384 (742)
Q Consensus 306 AGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 384 (742)
|||+..+.+. .|+.+..+|||||++.
T Consensus 351 AGNe~eDAC~~SPass~~aITVGAst~----------------------------------------------------- 377 (501)
T KOG1153|consen 351 AGNEHEDACNSSPASSKKAITVGASTK----------------------------------------------------- 377 (501)
T ss_pred CCCcchhhhccCcccccccEEeccccc-----------------------------------------------------
Confidence 9999988764 4688999999999642
Q ss_pred CCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEE
Q 048043 385 SSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIV 464 (742)
Q Consensus 385 ~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~ 464 (742)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHH
Q 048043 465 FKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLK 544 (742)
Q Consensus 465 ~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 544 (742)
.+.+|.|||||++. ||.|||.+|+|+|.+.. ....+.||||||+|||||++|.++
T Consensus 378 ----------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-------~at~ilSGTSMasPhvaG~aAy~l 432 (501)
T KOG1153|consen 378 ----------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-------NATAILSGTSMASPHVAGLAAYFL 432 (501)
T ss_pred ----------ccchhhhcCcccee--------eeecCchhhhhhhhcCc-------cchheeecccccCcchhhhHHHhh
Confidence 13789999999999 99999999999999854 567889999999999999999999
Q ss_pred hhCCC---------CCHHHHHHHHHcccc
Q 048043 545 SAHPD---------WSPAAIKSAIMTTAD 564 (742)
Q Consensus 545 q~~p~---------~s~~~ik~~L~~TA~ 564 (742)
+.+|. .+|.++|..++.-..
T Consensus 433 s~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 433 SLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99883 388888888877654
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=7.2e-44 Score=373.95 Aligned_cols=261 Identities=31% Similarity=0.404 Sum_probs=201.8
Q ss_pred CCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecC--CCCCCCCCCCCCCCch
Q 048043 131 GFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFL--QGSTGEPPLDDEGHGT 208 (742)
Q Consensus 131 ~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~--~~~~~~~~~d~~gHGT 208 (742)
.+|..+++|+||+|+|||||||++||+|.+.........+ ...+.+. .+.......|..+|||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~gHGT 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA---------------VNGYNFVPNVGDIDNDVSVGGGHGT 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc---------------cCCcccccccCCcCCCCCCCCCCHH
Confidence 3799999999999999999999999999975111000000 0001111 0111134567889999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||||+|...+.....|.. .+.|+||+++|+.+|++...+ .....++++|+|+++.|++|||||||......+...
T Consensus 66 ~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 66 HVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 99999998753322111111 235799999999999998765 777889999999999999999999998754445566
Q ss_pred HHHHHHHhhcC-------CcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 288 LAIGSFSAIQK-------EIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 288 ~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
+..++..+.++ |+++|+||||++......+...+++|+||+.+.
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------------------- 194 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------------------- 194 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------------------
Confidence 77777788877 999999999999887777888899999998421
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCC-cEEeccCCCccCCCCC
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGV-NILAAWPFSVENKTNT 519 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~ 519 (742)
.+.++.||++|+.. ||+|||. .|+++++... ...
T Consensus 195 ----------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~---~~~ 229 (273)
T cd07485 195 ----------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD---GDG 229 (273)
T ss_pred ----------------------------------CCCcCccccCCCce--------EEEeCCCCcccccccccc---CCC
Confidence 13567899999876 9999999 8988877531 112
Q ss_pred cccceeeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHcc
Q 048043 520 KSTFNMVAGTSMSCPHLSGVAALLKSAHPD-WSPAAIKSAIMTT 562 (742)
Q Consensus 520 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~s~~~ik~~L~~T 562 (742)
.+.|..++|||||||+|||++|||+|++|+ ++|+|||++|++|
T Consensus 230 ~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 230 GGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 267899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-43 Score=370.93 Aligned_cols=255 Identities=37% Similarity=0.572 Sum_probs=205.0
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCC-CCCCCCCCCCCCchhhhhhhccc
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG-STGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~-~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
|+||+|+|||+|||++||+|.+..... ..+... .......|..+|||||||||+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~-----------------------~~~~~~~~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF-----------------------ADFVNTVNGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc-----------------------ccccccccCCCCCCCCCCchHHHHHHHhcC
Confidence 899999999999999999998642110 111110 01145667889999999999988
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC----CCcEEEEccCCCCC-CCCCCHHHHH
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD----GVDVLSLSLGAASV-PFFEDPLAIG 291 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~~VIn~SlG~~~~-~~~~~~~~~a 291 (742)
..+. .+.+.|+||+|+|+.+|+++..+ ....++++|++|++++ +++|||||||.... ......+..+
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~ 130 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQA 130 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHH
Confidence 5321 23358999999999999998876 6778999999999998 99999999998753 4566788888
Q ss_pred HHHhhcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecC
Q 048043 292 SFSAIQKEIFVSCSAGNEGPNPS--TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPG 369 (742)
Q Consensus 292 ~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (742)
+.++.++|+++|+||||++.... ..+...+++|+||+...+..
T Consensus 131 ~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~----------------------------------- 175 (264)
T cd07487 131 VERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP----------------------------------- 175 (264)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-----------------------------------
Confidence 88999999999999999998775 55677899999998532210
Q ss_pred CCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHH
Q 048043 370 ANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 370 ~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 449 (742)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccc
Q 048043 450 KAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGT 529 (742)
Q Consensus 450 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 529 (742)
....++.||++||+. +++.||||+|||.+|+++.+..........+.|..++||
T Consensus 176 ------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GT 229 (264)
T cd07487 176 ------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGT 229 (264)
T ss_pred ------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEecccc
Confidence 002478899999998 689999999999999997654322222333688999999
Q ss_pred cchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 530 SMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 530 SmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
|||||+|||++|||+|++|++++.+||++|++||+
T Consensus 230 S~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 230 SMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred chHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999985
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.8e-43 Score=366.07 Aligned_cols=232 Identities=37% Similarity=0.565 Sum_probs=196.9
Q ss_pred CccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhh
Q 048043 132 FWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 132 ~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVA 211 (742)
+|..+++|+||+|||||+||+++||+|.++ +...+++... ....|..+||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~---~~~~d~~~HGT~vA 70 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGG---DPDSDCNGHGTHVA 70 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCC---CCCCCCCccHHHHH
Confidence 677789999999999999999999999753 1222344433 23668899999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhC-----CCcEEEEccCCCCCCCCC
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDD-----GVDVLSLSLGAASVPFFE 285 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~~VIn~SlG~~~~~~~~ 285 (742)
|||+|.. .||||+|+|+.+|+++..+ ...++++++++|++++ +++|||||||... .
T Consensus 71 giia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----~ 132 (255)
T cd04077 71 GTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----S 132 (255)
T ss_pred HHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC----C
Confidence 9999863 6999999999999998876 7778899999999987 4899999999874 4
Q ss_pred CHHHHHHHHhhcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCcee
Q 048043 286 DPLAIGSFSAIQKEIFVSCSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFP 364 (742)
Q Consensus 286 ~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 364 (742)
..+..++.++.++|+++|+||||+|.+. ...+...+++|+||+...
T Consensus 133 ~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~--------------------------------- 179 (255)
T cd04077 133 TALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS--------------------------------- 179 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC---------------------------------
Confidence 5677777789999999999999999776 455778899999998421
Q ss_pred EEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehh
Q 048043 365 LIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYA 444 (742)
Q Consensus 365 ~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 444 (742)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccce
Q 048043 445 AGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFN 524 (742)
Q Consensus 445 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~ 524 (742)
.+.+++||++||.. ||+|||.+|.++..... +.|.
T Consensus 180 ------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~-------~~~~ 214 (255)
T cd04077 180 ------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD-------TATA 214 (255)
T ss_pred ------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC-------CcEE
Confidence 12467899999987 99999999999887422 6899
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccc
Q 048043 525 MVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADI 565 (742)
Q Consensus 525 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~ 565 (742)
.++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 215 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 215 TLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=7.1e-43 Score=364.21 Aligned_cols=241 Identities=34% Similarity=0.503 Sum_probs=204.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
...+|..+ +|+||+|+|||+|||++||+|... ++...+++.+.. ..+.|..+|||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~--~~~~d~~~HGT 72 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDND--SDAMDDNGHGT 72 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCC--CCCCCCCCcHH
Confidence 45689988 999999999999999999998422 233334444432 34668899999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCH
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDP 287 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~ 287 (742)
||||||++.... ...+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++|||||||... ....
T Consensus 73 ~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~~~~ 141 (260)
T cd07484 73 HVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL---GSTA 141 (260)
T ss_pred HHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---CCHH
Confidence 999999987422 12347999999999999998766 77889999999999999999999999873 4566
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEe
Q 048043 288 LAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIY 367 (742)
Q Consensus 288 ~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (742)
+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 142 ~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------------------------ 185 (260)
T cd07484 142 LQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------------------------ 185 (260)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC------------------------------------
Confidence 77777888899999999999999988888999999999998421
Q ss_pred cCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHH
Q 048043 368 PGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 368 ~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 447 (742)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeec
Q 048043 448 SIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~s 527 (742)
.+..+.||++|+.. |++|||.+|+++.+. +.|..++
T Consensus 186 ---------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~~~~~~ 221 (260)
T cd07484 186 ---------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GDYAYMS 221 (260)
T ss_pred ---------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CCEEEee
Confidence 12567899999876 999999999998876 7899999
Q ss_pred cccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccc
Q 048043 528 GTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIV 566 (742)
Q Consensus 528 GTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~ 566 (742)
|||||||+|||++||+++++| +++++||++|++||+++
T Consensus 222 GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 222 GTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred eHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 999999999999999999999 99999999999999875
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-42 Score=358.12 Aligned_cols=251 Identities=37% Similarity=0.489 Sum_probs=188.7
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCC--CCCCCCCCCCCCchhhhhhhcccc
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQG--STGEPPLDDEGHGTHTATTAAGNF 218 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~--~~~~~~~d~~gHGThVAGiiaG~~ 218 (742)
||+|||||+|||++||+|.+.- ....+|..+ .......|..+|||||||||+|+.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~ 57 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------AQWADFDENRRISATEVFDAGGHGTHVSGTIGGGG 57 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------CCceeccCCCCCCCCCCCCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998531 111122110 112345678899999999999974
Q ss_pred cCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhc-
Q 048043 219 VNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ- 297 (742)
Q Consensus 219 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~- 297 (742)
. .+.+.||||+++|+.+|++...++..++++++|+|+++++++|||||||..... .+.+..++....+
T Consensus 58 ~---------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~~ 126 (254)
T cd07490 58 A---------KGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSNQ 126 (254)
T ss_pred C---------CCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHHc
Confidence 3 223479999999999999987777889999999999999999999999987533 4566655555554
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCC
Q 048043 298 KEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSA 377 (742)
Q Consensus 298 ~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (742)
+|+++|+||||+|......+...+++|+||+...+..... +.
T Consensus 127 ~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s--------- 168 (254)
T cd07490 127 TGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS--------- 168 (254)
T ss_pred CCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc---------
Confidence 6999999999999887788888999999999643221000 00
Q ss_pred CcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCC
Q 048043 378 QCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTS 457 (742)
Q Consensus 378 ~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 457 (742)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHH
Q 048043 458 SPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537 (742)
Q Consensus 458 ~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 537 (742)
..........+.+|... ....|||++|||.+|+++... ....+.|..++|||||||+||
T Consensus 169 ---------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~-----~~~~~~~~~~~GTS~AaP~va 227 (254)
T cd07490 169 ---------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQG-----ANGDGQYTRLSGTSMAAPHVA 227 (254)
T ss_pred ---------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccC-----CCCCCCeeecccHHHHHHHHH
Confidence 00001122233344332 357899999999999996522 112268999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 538 GVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 538 G~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
|++|||+|++|++++.+||++|++||+
T Consensus 228 G~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 228 GVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999985
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-42 Score=368.69 Aligned_cols=258 Identities=26% Similarity=0.286 Sum_probs=186.4
Q ss_pred EEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCCC
Q 048043 143 IIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNGA 222 (742)
Q Consensus 143 ~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~~ 222 (742)
+|||||||||.+||+|.+.- .....+.... ....|..||||||||||++....
T Consensus 2 ~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~--~~~~d~~gHGT~vAgiia~~~~~-- 54 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEP--GWTADDLGHGTAVAGLALYGDLT-- 54 (291)
T ss_pred EEEEecCCCCCCChhhhhhh-----------------------ccccccccCC--CCcCCCCCChHHHHHHHHcCccc--
Confidence 79999999999999998531 1111121110 11568999999999999975321
Q ss_pred cccccCCcceeeecCcceEEEEEEeccCC-----CCHHHHHHHHHHhhhCC---CcEEEEccCCCCCCCCC--CHHHHHH
Q 048043 223 NVFGQADGTAVGIAPLAHLAIYKVCDFDG-----CSESRVYAAMDTAIDDG---VDVLSLSLGAASVPFFE--DPLAIGS 292 (742)
Q Consensus 223 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~~VIn~SlG~~~~~~~~--~~~~~a~ 292 (742)
.....|+||+++|+.+|++...| ....++++||+|+++++ ++|||||||........ ..+..++
T Consensus 55 ------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~~i 128 (291)
T cd04847 55 ------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAAAL 128 (291)
T ss_pred ------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHHHH
Confidence 12237999999999999998763 56678999999999863 49999999987532211 2444444
Q ss_pred H-HhhcCCcEEEEecCCCCCCCCC------------CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCC
Q 048043 293 F-SAIQKEIFVSCSAGNEGPNPST------------SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFP 359 (742)
Q Consensus 293 ~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 359 (742)
. .+.++|++||+||||++..... .++..+++|+|||...+...... +.+
T Consensus 129 d~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------------s~~------ 190 (291)
T cd04847 129 DQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------------ARY------ 190 (291)
T ss_pred HHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------------ccc------
Confidence 3 3568999999999999987543 24567899999996433210000 000
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAV 439 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~ 439 (742)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCc------
Q 048043 440 HVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSV------ 513 (742)
Q Consensus 440 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~------ 513 (742)
+.......+.||++||.. ++.+||||+|||++|.+..+...
T Consensus 191 -------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~ 237 (291)
T cd04847 191 -------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLS 237 (291)
T ss_pred -------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcce
Confidence 000001233499999998 78999999999999987644211
Q ss_pred ---cCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 514 ---ENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 514 ---~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
.........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 238 ~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 238 LLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 011123368999999999999999999999999999999999999999985
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-42 Score=364.73 Aligned_cols=249 Identities=26% Similarity=0.333 Sum_probs=184.1
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCch
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGT 208 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGT 208 (742)
+..+|+++++|+||+|||||||||..|| |..++.. +. ..+..+ ......|+.||||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~---------------~~~~~~-~~~~~~D~~gHGT 65 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VR---------------VVLAPG-ATDPACDENGHGT 65 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ce---------------eecCCC-CCCCCCCCCCcch
Confidence 4569999999999999999999999998 7643211 10 001110 0134567889999
Q ss_pred hhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCCC-----
Q 048043 209 HTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVPF----- 283 (742)
Q Consensus 209 hVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~----- 283 (742)
|||+++ .||||+|+|+.+|+++. ..+++++||+||++++++|||||||......
T Consensus 66 ~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~ 124 (298)
T cd07494 66 GESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWS 124 (298)
T ss_pred heeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccc
Confidence 999875 49999999999999875 4567999999999999999999999863211
Q ss_pred -----CCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCC
Q 048043 284 -----FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDF 358 (742)
Q Consensus 284 -----~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 358 (742)
....+..++.+|.++|++||+||||++. .+|+..|++|+||+...+.. +
T Consensus 125 ~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g-------------- 178 (298)
T cd07494 125 RSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G-------------- 178 (298)
T ss_pred cccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C--------------
Confidence 1335777888889999999999999874 56889999999999533211 0
Q ss_pred CCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccE
Q 048043 359 PSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPA 438 (742)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~ 438 (742)
T Consensus 179 -------------------------------------------------------------------------------- 178 (298)
T cd07494 179 -------------------------------------------------------------------------------- 178 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCcccccc--CCCCCCCCCCCcccce----------------Ee
Q 048043 439 VHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFS--SRGPSIASPGILKPDI----------------IG 500 (742)
Q Consensus 439 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--s~Gp~~~~~~~~KPDI----------------~A 500 (742)
.....++ ++... ..+++.|||+ +|
T Consensus 179 -------------------------------------~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~~~~~~~~A 220 (298)
T cd07494 179 -------------------------------------ARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHAAYLMLPVP 220 (298)
T ss_pred -------------------------------------cccccccccCcccc-cCCCCccCccccccCcCCcccccccccC
Confidence 0000111 11111 1246677776 47
Q ss_pred cCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHccccccc
Q 048043 501 PGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVS 567 (742)
Q Consensus 501 PG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~ 567 (742)
||..|.++..... ........|..++|||||||||||++|||+|++|.|++++||.+|++||+++.
T Consensus 221 PG~~i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 221 PGSQLDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred CCcceeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 9999876543211 01112367999999999999999999999999999999999999999999774
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-42 Score=363.83 Aligned_cols=259 Identities=27% Similarity=0.358 Sum_probs=190.1
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccc-c-ccCccccCccccceeecC-------CCCCCCCCCCCCCCchhhh
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGK-C-EFKGAACNNKLIGARNFL-------QGSTGEPPLDDEGHGTHTA 211 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~-~-~~g~~f~n~ki~~~~~~~-------~~~~~~~~~d~~gHGThVA 211 (742)
||+|||||||||++||+|.++...... ..+.. . ..+.. ...+.....++. .........+..+||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d-~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vA 78 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYD-FISDPAIANDGDG-RDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVA 78 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcc-cccCcccccCCCC-CCCCCCCcccccccccccccccccCCCCCCCCCHHHHH
Confidence 799999999999999999875321100 00000 0 00000 000000000000 0000233456789999999
Q ss_pred hhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhh----------hCCCcEEEEccCCCCC
Q 048043 212 TTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAI----------DDGVDVLSLSLGAASV 281 (742)
Q Consensus 212 GiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g~~VIn~SlG~~~~ 281 (742)
|||+|...+ ...+.||||+|+|+.+|+++..+...+++++|++|++ .++++|||||||....
T Consensus 79 giiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~ 150 (285)
T cd07496 79 GTIAAVTNN--------GVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGA 150 (285)
T ss_pred HHHhCcCCC--------CCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCC
Confidence 999997531 1224799999999999999887778889999999998 4578999999998742
Q ss_pred CCCCCHHHHHHHHhhcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 282 PFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNP-STSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 282 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
. ...+..++..+.++|++||+||||++.+. ..++...+++|+||+..
T Consensus 151 ~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~------------------------------ 198 (285)
T cd07496 151 C--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD------------------------------ 198 (285)
T ss_pred C--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC------------------------------
Confidence 2 45777788889999999999999999876 56778889999999842
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCcc------
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVE------ 514 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~------ 514 (742)
..+.++.||++|+.. ||+|||++|.++......
T Consensus 199 ---------------------------------~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~ 237 (285)
T cd07496 199 ---------------------------------LRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTG 237 (285)
T ss_pred ---------------------------------CCCCcccccCCCCCC--------CEEeCCCCccccCCCCcccccccc
Confidence 123678899999987 999999999988765321
Q ss_pred CCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 515 NKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 515 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 238 ~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 238 TTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 112223578899999999999999999999999999999999999986
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=4e-42 Score=365.16 Aligned_cols=277 Identities=31% Similarity=0.386 Sum_probs=202.7
Q ss_pred CCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhh
Q 048043 135 DSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTA 214 (742)
Q Consensus 135 ~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGii 214 (742)
++++|+||+|||||+|||++||+|.+... .+..|.++++.....+... ..|..+|||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~~~~~~~~~~~~~~~~-----~~d~~~HGT~vAgii 64 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTNLFHRKIVRYDSLSDT-----KDDVDGHGTHVAGII 64 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCccCcccEEEeeccCCC-----CCCCCCCcchhheee
Confidence 58999999999999999999999986421 1111233444444443332 237899999999999
Q ss_pred cccccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHH
Q 048043 215 AGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGS 292 (742)
Q Consensus 215 aG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~ 292 (742)
+|....... ...+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||||||...... ......++
T Consensus 65 a~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~~~ 138 (293)
T cd04842 65 AGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG-YTLLARAY 138 (293)
T ss_pred ccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-cchHHHHH
Confidence 998533211 11358999999999999998765 55667899999999999999999999875321 22333333
Q ss_pred HHhh-c-CCcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEe
Q 048043 293 FSAI-Q-KEIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIY 367 (742)
Q Consensus 293 ~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 367 (742)
.++. + +|+++|+||||++.... ..+...+++|+||+..........
T Consensus 139 ~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----------------------------- 189 (293)
T cd04842 139 DQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----------------------------- 189 (293)
T ss_pred HHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----------------------------
Confidence 3333 3 89999999999998765 567889999999996443210000
Q ss_pred cCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHH
Q 048043 368 PGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 368 ~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 447 (742)
.|..
T Consensus 190 ----------~~~~------------------------------------------------------------------ 193 (293)
T cd04842 190 ----------GGLG------------------------------------------------------------------ 193 (293)
T ss_pred ----------cccc------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeec
Q 048043 448 SIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVA 527 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~s 527 (742)
.....+.++.||++||+. ++++||||+|||++|+++.+............|..++
T Consensus 194 -----------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (293)
T cd04842 194 -----------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKS 248 (293)
T ss_pred -----------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecC
Confidence 012234789999999998 6899999999999999997542111122236789999
Q ss_pred cccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHcccc
Q 048043 528 GTSMSCPHLSGVAALLKSAH-----P---DWSPAAIKSAIMTTAD 564 (742)
Q Consensus 528 GTSmAaP~VAG~aALl~q~~-----p---~~s~~~ik~~L~~TA~ 564 (742)
|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 249 GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 249 GTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999999985 4 6667799999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.3e-42 Score=362.44 Aligned_cols=265 Identities=30% Similarity=0.414 Sum_probs=186.6
Q ss_pred cCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhh
Q 048043 134 KDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATT 213 (742)
Q Consensus 134 ~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGi 213 (742)
..+++|+||+|||||+|||.+||+|.+.. +...+|.+. ....|..+||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~-----------------------~~~~~~~~~---~~~~d~~gHGT~VAgi 55 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD-----------------------ITTKSFVGG---EDVQDGHGHGTHCAGT 55 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc-----------------------ccCcccCCC---CCCCCCCCcHHHHHHH
Confidence 35789999999999999999999998541 112334433 3356889999999999
Q ss_pred hcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCC---------
Q 048043 214 AAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPF--------- 283 (742)
Q Consensus 214 iaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~--------- 283 (742)
|+|+..+ +...||||+|+|+.+|++...+ ....++++||+||+++|++|||||||......
T Consensus 56 iag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~ 126 (297)
T cd07480 56 IFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126 (297)
T ss_pred HhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCc
Confidence 9987432 2236999999999999997655 67778999999999999999999999854111
Q ss_pred -CCCHHHHHHHHh---------------hcCCcEEEEecCCCCCCCCCCC-----CCCCceEEecccCCcceeEEEEEeC
Q 048043 284 -FEDPLAIGSFSA---------------IQKEIFVSCSAGNEGPNPSTSS-----NEAPWILSVGASTTDRSIVASVELG 342 (742)
Q Consensus 284 -~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~ 342 (742)
....+......+ .++|+++|+||||++....... ...+.+++|++..
T Consensus 127 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~------------ 194 (297)
T cd07480 127 AFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG------------ 194 (297)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEEC------------
Confidence 111222222233 6799999999999986543221 1112222222210
Q ss_pred CCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEecc
Q 048043 343 NQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMND 422 (742)
Q Consensus 343 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~ 422 (742)
T Consensus 195 -------------------------------------------------------------------------------- 194 (297)
T cd07480 195 -------------------------------------------------------------------------------- 194 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecC
Q 048043 423 KLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPG 502 (742)
Q Consensus 423 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 502 (742)
..+....|+++.+. ...||||+|||
T Consensus 195 ---------------------------------------------------~~~~~~~~~~~~~~----~~~~~dv~ApG 219 (297)
T cd07480 195 ---------------------------------------------------ALGRTGNFSAVANF----SNGEVDIAAPG 219 (297)
T ss_pred ---------------------------------------------------CCCCCCCccccCCC----CCCceEEEeCC
Confidence 01122223333322 24578999999
Q ss_pred CcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCC
Q 048043 503 VNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPAD 582 (742)
Q Consensus 503 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 582 (742)
.+|+++.+. +.|..++|||||||+|||++|||+|++|++++.+++.+|++......... . .....
T Consensus 220 ~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-~-----~~~~~ 284 (297)
T cd07480 220 VDIVSAAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-F-----APGLD 284 (297)
T ss_pred CCeEeecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-C-----CCCCC
Confidence 999999887 78999999999999999999999999999999888888874322210000 0 11245
Q ss_pred CCcccccccCcCC
Q 048043 583 MFAVGAGHVNPSS 595 (742)
Q Consensus 583 ~~~~G~G~vd~~~ 595 (742)
...+|+|++++.+
T Consensus 285 ~~~~g~G~~~~~~ 297 (297)
T cd07480 285 LPDRGVGLGLAPA 297 (297)
T ss_pred hhhcCCceeecCC
Confidence 5689999998753
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-41 Score=351.19 Aligned_cols=239 Identities=30% Similarity=0.430 Sum_probs=190.8
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccCC
Q 048043 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVNG 221 (742)
Q Consensus 142 V~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~~ 221 (742)
|+|||||+|||++||+|.+.. ++...+++.... ....|..+|||||||||+|+..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~--~~~~~~~~HGT~vAgiiag~~~~- 56 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNN--DPTSDIDGHGTACAGVAAAVGNN- 56 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCC--CCCCCCCCCHHHHHHHHHhccCC-
Confidence 789999999999999998630 011112222211 24567899999999999987421
Q ss_pred CcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCC-CCCCCHHHHHHHHhhc-C
Q 048043 222 ANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASV-PFFEDPLAIGSFSAIQ-K 298 (742)
Q Consensus 222 ~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~-~~~~~~~~~a~~~a~~-~ 298 (742)
...+.|+||+|+|+.+|++...+ ....++.++++|+++++++|||||||.... ......+..++..+.+ +
T Consensus 57 -------~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T cd07498 57 -------GLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK 129 (242)
T ss_pred -------CceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcC
Confidence 22358999999999999998765 678889999999999999999999998643 2335567777777888 9
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCC
Q 048043 299 EIFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQ 378 (742)
Q Consensus 299 Gi~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (742)
|+++|+||||+|......++..+++|+||+.+.
T Consensus 130 gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------------------------------- 162 (242)
T cd07498 130 GGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------------------------------- 162 (242)
T ss_pred CeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------------------------------
Confidence 999999999999887777888999999998421
Q ss_pred cCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCC
Q 048043 379 CSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSS 458 (742)
Q Consensus 379 c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 458 (742)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHH
Q 048043 459 PNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSG 538 (742)
Q Consensus 459 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 538 (742)
.+.+++||++||.. |++|||.++...........+...+.|..++|||||||+|||
T Consensus 163 ----------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG 218 (242)
T cd07498 163 ----------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAG 218 (242)
T ss_pred ----------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHH
Confidence 12567899999987 999999999888544221222233678999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 539 VAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 539 ~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
++|||+|++|+|++++||++|++|
T Consensus 219 ~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 219 VAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999976
No 28
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.1e-40 Score=341.07 Aligned_cols=226 Identities=36% Similarity=0.571 Sum_probs=188.1
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccC
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
||+|||||+||+.+||+|.+. +....+|....+ ....|..+|||||||||+|....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~-~~~~~~~~HGT~vA~ii~~~~~~ 56 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDN-NDYQDGNGHGTHVAGIIAALDNG 56 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCC-CCCCCCCCCHHHHHHHHhcccCC
Confidence 799999999999999999853 112223332211 24567889999999999987432
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCC
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKE 299 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~G 299 (742)
. .+.|+||+|+|+.+|+++..+ ....+++++++|+++++++|||||||... ....+..++..+.++|
T Consensus 57 ~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~~~g 124 (229)
T cd07477 57 V---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAYAAG 124 (229)
T ss_pred C---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHHHCC
Confidence 1 347999999999999998876 67789999999999999999999999863 3345667777889999
Q ss_pred cEEEEecCCCCCCCCCC--CCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCC
Q 048043 300 IFVSCSAGNEGPNPSTS--SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSA 377 (742)
Q Consensus 300 i~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (742)
+++|+||||++...... ++..+++|+||+.+.
T Consensus 125 iliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------------------------- 158 (229)
T cd07477 125 ILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------------------------------- 158 (229)
T ss_pred CEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------------------------------
Confidence 99999999999876654 788899999998421
Q ss_pred CcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCC
Q 048043 378 QCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTS 457 (742)
Q Consensus 378 ~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 457 (742)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHH
Q 048043 458 SPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLS 537 (742)
Q Consensus 458 ~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 537 (742)
.+.+..||++|+.. |+.|||.+|+++++. +.|..++|||||||+||
T Consensus 159 -----------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~va 204 (229)
T cd07477 159 -----------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN---------NDYAYLSGTSMATPHVA 204 (229)
T ss_pred -----------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------CCEEEEccHHHHHHHHH
Confidence 12566899999876 999999999999887 78999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 538 GVAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 538 G~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
|++|||+|++|++++.+||++|++|
T Consensus 205 g~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 205 GVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999986
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.9e-41 Score=350.38 Aligned_cols=244 Identities=21% Similarity=0.285 Sum_probs=176.5
Q ss_pred CCCCccCC-CCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCc
Q 048043 129 NSGFWKDS-NLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHG 207 (742)
Q Consensus 129 ~~~~~~~~-~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHG 207 (742)
+..+|+.. ..|+||+|+|||+|||.+||+|.++... +... ....|+.+||
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~~~~---~~~~d~~gHG 54 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------LISG---LTDQADSDHG 54 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------ccCC---CCCCCCCCCc
Confidence 34588874 4599999999999999999999864211 0000 1246789999
Q ss_pred hhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh----CCCcEEEEccCCCCCCC
Q 048043 208 THTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID----DGVDVLSLSLGAASVPF 283 (742)
Q Consensus 208 ThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~----~g~~VIn~SlG~~~~~~ 283 (742)
|||||||+|.. +..| +.||||+|+|+.+|++. .++++++|.||++ .++.+||||||......
T Consensus 55 T~VAGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~ 120 (277)
T cd04843 55 TAVLGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY 120 (277)
T ss_pred chhheeeeeec--------CCCc-eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc
Confidence 99999999862 1223 47999999999999985 2345566666665 45678999999864221
Q ss_pred ------CCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC------------C-CCCCceEEecccCCcceeEEEEEeCCC
Q 048043 284 ------FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS------------S-NEAPWILSVGASTTDRSIVASVELGNQ 344 (742)
Q Consensus 284 ------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~~~g 344 (742)
....+..++.++.++|+++|+||||++.+.... + ...+++|+|||...+
T Consensus 121 ~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~------------ 188 (277)
T cd04843 121 PPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST------------ 188 (277)
T ss_pred ccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC------------
Confidence 223455677788899999999999998753211 1 123457777763210
Q ss_pred eeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC
Q 048043 345 AVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL 424 (742)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~ 424 (742)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCc
Q 048043 425 NGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVN 504 (742)
Q Consensus 425 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 504 (742)
....++.||+||+.. ||+|||++
T Consensus 189 -------------------------------------------------~~~~~~~fSn~G~~v--------di~APG~~ 211 (277)
T cd04843 189 -------------------------------------------------TGHTRLAFSNYGSRV--------DVYGWGEN 211 (277)
T ss_pred -------------------------------------------------CCCccccccCCCCcc--------ceEcCCCC
Confidence 011378999999987 99999999
Q ss_pred EEeccCCCcc-CCCCCcccceeeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHcccc
Q 048043 505 ILAAWPFSVE-NKTNTKSTFNMVAGTSMSCPHLSGVAALLKS----A-HPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 505 I~sa~~~~~~-~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s~~~ik~~L~~TA~ 564 (742)
|+++.+.... ......+.|..++|||||||||||++|||++ + +|+|+++|||++|++|++
T Consensus 212 i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 212 VTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 9999876331 0111123457899999999999999999974 3 499999999999999974
No 30
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-40 Score=345.98 Aligned_cols=251 Identities=33% Similarity=0.467 Sum_probs=192.1
Q ss_pred CccEEEEEcccCCCCCCCCCCCCCCCC-CCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccc
Q 048043 140 KGVIIGVMDTGITPGHPSFSDEGMPPP-PAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNF 218 (742)
Q Consensus 140 ~gV~VaVIDtGid~~Hp~f~~~g~~~~-~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~ 218 (742)
+||+|||||||||++||+|.++..... ...+.+....+..| -.+. ..++|... ..++.|..+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~--~~~~~d~~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGY-VDDI-YGWNFVNN--DNDPMDDNGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCc-ccCC-CcccccCC--CCCCCCCCCcHHHHHHHHHCcC
Confidence 689999999999999999997421100 00111111111111 0001 11122221 2556788999999999999874
Q ss_pred cCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhc
Q 048043 219 VNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQ 297 (742)
Q Consensus 219 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~ 297 (742)
.+ ...+.|+||+|+|+.+|++...+ ++..+++++++++++++++|||+|||.... ...+..++.++.+
T Consensus 78 ~~--------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~~~~~~ 146 (259)
T cd07473 78 NN--------GIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAIARAID 146 (259)
T ss_pred CC--------CCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHHHHHHh
Confidence 32 22357999999999999998877 788899999999999999999999998732 5677788888999
Q ss_pred CCcEEEEecCCCCCCC---CCCCC--CCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCC
Q 048043 298 KEIFVSCSAGNEGPNP---STSSN--EAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANG 372 (742)
Q Consensus 298 ~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (742)
+|+++|+||||+|... ..++. ..+++|+||+..
T Consensus 147 ~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~------------------------------------------ 184 (259)
T cd07473 147 AGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD------------------------------------------ 184 (259)
T ss_pred CCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC------------------------------------------
Confidence 9999999999998762 23333 357888888742
Q ss_pred CCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHH
Q 048043 373 NVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 373 ~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccch
Q 048043 453 INSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMS 532 (742)
Q Consensus 453 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 532 (742)
..+.++.||++||. +||+.|||.++++..+. +.|..++|||||
T Consensus 185 ---------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~~~GTS~A 227 (259)
T cd07473 185 ---------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGYMSGTSMA 227 (259)
T ss_pred ---------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEEeccHhHH
Confidence 12356679999985 36999999999997766 789999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 533 CPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 533 aP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
||+|||++||++|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.1e-41 Score=344.08 Aligned_cols=210 Identities=22% Similarity=0.287 Sum_probs=167.1
Q ss_pred CCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-----CCCCCCCCCCchhhhhh
Q 048043 139 GKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-----GEPPLDDEGHGTHTATT 213 (742)
Q Consensus 139 G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-----~~~~~d~~gHGThVAGi 213 (742)
+++|+|||||||||++||+|.++- ...++|....+ .....|..|||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i-----------------------~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI-----------------------IGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc-----------------------ccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 789999999999999999998531 11112221110 12235789999999999
Q ss_pred hcccccCCCcccccCCcceeeecCcceEEEEEEeccCC-------CCHHHHHHHHHHhhhCCCcEEEEccCCCCCC---C
Q 048043 214 AAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-------CSESRVYAAMDTAIDDGVDVLSLSLGAASVP---F 283 (742)
Q Consensus 214 iaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~---~ 283 (742)
|+ |+||+|+|+.+|+++..+ ++...+++||+||+++|++|||||||..... .
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 96 789999999999998643 3567899999999999999999999986432 1
Q ss_pred CCCHHHHHHHHhhcCCcEEEEecCCCCCCCC-C--CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCC
Q 048043 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPS-T--SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPS 360 (742)
Q Consensus 284 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 360 (742)
....+..++.+|.++|++||+||||+|.... . .+...+++|+|||.+.
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~----------------------------- 171 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE----------------------------- 171 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-----------------------------
Confidence 2567888888999999999999999998754 3 3466789999998421
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEE
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVH 440 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~ 440 (742)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCc
Q 048043 441 VSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTK 520 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 520 (742)
.+.++.||++|+.. |++|||++|+++.+.. ..
T Consensus 172 ----------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~------~~ 203 (247)
T cd07491 172 ----------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPP------LS 203 (247)
T ss_pred ----------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCC------CC
Confidence 23567899999887 9999999999987621 11
Q ss_pred ccceeeccccchhHHHHHHHHHHHhh
Q 048043 521 STFNMVAGTSMSCPHLSGVAALLKSA 546 (742)
Q Consensus 521 ~~y~~~sGTSmAaP~VAG~aALl~q~ 546 (742)
+.|..++|||||||||||++||+++.
T Consensus 204 ~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 204 NSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999974
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=4.8e-41 Score=354.88 Aligned_cols=273 Identities=38% Similarity=0.557 Sum_probs=208.0
Q ss_pred EEEEEcccCCCCCCCCC-CCCCCCCCCccccccccCccccCccccceeecCCCC-CCCCCCCCCCCchhhhhhhcccccC
Q 048043 143 IIGVMDTGITPGHPSFS-DEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGS-TGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 143 ~VaVIDtGid~~Hp~f~-~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~-~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
+|||||||||++||+|. ++ + ...++.+.+.|.++. +.....|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F-----------------IWSKVPGGYNFVDGNPNPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E-----------------EEEEEEEEEETTTTBSTTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c-----------------ccccccceeeccCCCCCcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 32 0 111223344555442 23456778999999999999985 2
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhh-hCCCcEEEEccCCCC---CCCCCCHHHHHHHHhh
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAI-DDGVDVLSLSLGAAS---VPFFEDPLAIGSFSAI 296 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~~VIn~SlG~~~---~~~~~~~~~~a~~~a~ 296 (742)
.. .....|+||+|+|+.+|++...+....++++++++++ +++++|||||||... .+.....+..+...+.
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~ 135 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDYAE 135 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHHHH
T ss_pred -cc-----ccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccccccccccccccc
Confidence 11 1224799999999999998777677788999999999 899999999998832 1122234555666788
Q ss_pred cCCcEEEEecCCCCCCCCC---CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCC
Q 048043 297 QKEIFVSCSAGNEGPNPST---SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGN 373 (742)
Q Consensus 297 ~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (742)
++|+++|+||||++..... .+...+++|+||+..
T Consensus 136 ~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~------------------------------------------- 172 (282)
T PF00082_consen 136 KKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD------------------------------------------- 172 (282)
T ss_dssp HTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE-------------------------------------------
T ss_pred ccCcceeeccccccccccccccccccccccccccccc-------------------------------------------
Confidence 9999999999999877653 556678889998742
Q ss_pred CCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHH
Q 048043 374 VSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYI 453 (742)
Q Consensus 374 ~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 453 (742)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchh
Q 048043 454 NSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533 (742)
Q Consensus 454 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 533 (742)
..+.++.||++|+... ++++||||+|||.+|.+.++.... ..|..++||||||
T Consensus 173 --------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~------~~~~~~~GTS~Aa 225 (282)
T PF00082_consen 173 --------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR------GSYTSFSGTSFAA 225 (282)
T ss_dssp --------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES------EEEEEEESHHHHH
T ss_pred --------------------cccccccccccccccc-cccccccccccccccccccccccc------ccccccCcCCchH
Confidence 1125688999976543 579999999999999888876210 3578899999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCC
Q 048043 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSAND 598 (742)
Q Consensus 534 P~VAG~aALl~q~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 598 (742)
|+|||++||++|++|++++.+||++|++||.++.... ....+..||||+||+++|++
T Consensus 226 p~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 226 PVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999999886221 13456688999999999864
No 33
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=4.5e-40 Score=350.08 Aligned_cols=248 Identities=26% Similarity=0.283 Sum_probs=181.8
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC--CCCCC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL--DDEGH 206 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~--d~~gH 206 (742)
...+|+.+++|+||+|+|||||||++||+|.++... ...++|....+...+. |..+|
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~gH 86 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------EASYDFNDNDPDPTPRYDDDNSH 86 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc---------------------cccccccCCCCCCCCcccccccc
Confidence 456999999999999999999999999999864211 0112232222112222 78899
Q ss_pred chhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCCCCC----
Q 048043 207 GTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAASVP---- 282 (742)
Q Consensus 207 GThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~---- 282 (742)
||||||||+|+... .....||||+|+|+.+|++... .....+..++.++.+ .++|||||||.....
T Consensus 87 GT~vAgiiag~~~~--------~~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~~~~ 156 (297)
T cd04059 87 GTRCAGEIAAVGNN--------GICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGKTVD 156 (297)
T ss_pred CcceeeEEEeecCC--------CcccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCCccC
Confidence 99999999988422 1123799999999999998765 334455666666654 459999999976422
Q ss_pred CCCCHHHHHHHHhhc-----CCcEEEEecCCCCCCCCC----CCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeecc
Q 048043 283 FFEDPLAIGSFSAIQ-----KEIFVSCSAGNEGPNPST----SSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALF 353 (742)
Q Consensus 283 ~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~ 353 (742)
........++.++.+ +|+++|+||||+|..... .....+++|+||+.+.
T Consensus 157 ~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~---------------------- 214 (297)
T cd04059 157 GPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA---------------------- 214 (297)
T ss_pred CCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC----------------------
Confidence 122233444444443 699999999999974221 2245678888888421
Q ss_pred CCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCC
Q 048043 354 QPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADP 433 (742)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~ 433 (742)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCc-------EE
Q 048043 434 HLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVN-------IL 506 (742)
Q Consensus 434 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~-------I~ 506 (742)
.+.++.||++|+.. +++|||.. |+
T Consensus 215 -----------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~ 245 (297)
T cd04059 215 -----------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIV 245 (297)
T ss_pred -----------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceE
Confidence 23667899999987 89999987 66
Q ss_pred eccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 507 AAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 507 sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 246 ~~~~~~------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 246 TTDLGG------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eCCCCC------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 665441 0156788999999999999999999999999999999999999985
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-39 Score=329.67 Aligned_cols=221 Identities=24% Similarity=0.333 Sum_probs=174.6
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccC
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
||+|||||||||++||+|.++... + ..| ....+... .....|..||||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----~-------~~~-----~~~~~~~~---~~~~~d~~gHGT~vAgiia~---- 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----G-------EVT-----IDLEIIVV---SAEGGDKDGHGTACAGIIKK---- 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----c-------ccc-----cccccccC---CCCCCCCCCcHHHHHHHHHc----
Confidence 799999999999999999864211 0 000 00001111 14556789999999999984
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcCC
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQKE 299 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~G 299 (742)
.+|+++|+.+|+++..+ +..+++++||+|+++++++|||||||..... ....+..++.++.++|
T Consensus 57 --------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~~~g 121 (222)
T cd07492 57 --------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAYKAG 121 (222)
T ss_pred --------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHHHCC
Confidence 46999999999998876 7888999999999999999999999987432 2346677777888899
Q ss_pred cEEEEecCCCCCCCCCCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCCCCCCc
Q 048043 300 IFVSCSAGNEGPNPSTSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQC 379 (742)
Q Consensus 300 i~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 379 (742)
+++|+||||++.... .+...+++|+||+...+.
T Consensus 122 ~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------------------------------------- 154 (222)
T cd07492 122 GIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------------------------------------- 154 (222)
T ss_pred CEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------------------------------
Confidence 999999999986543 367788899998742110
Q ss_pred CCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCC
Q 048043 380 SPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSP 459 (742)
Q Consensus 380 ~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 459 (742)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHH
Q 048043 460 NATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGV 539 (742)
Q Consensus 460 ~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 539 (742)
.. +.+++ ++|++|||.+|+++.+. +.|..++|||||||+|||+
T Consensus 155 -----------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap~vaG~ 197 (222)
T cd07492 155 -----------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAPHVTGM 197 (222)
T ss_pred -----------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHHHHHHH
Confidence 01 11233 34999999999999887 7899999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 540 AALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 540 aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
+|||+|++|+|+++|||++|++||+
T Consensus 198 ~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 198 VALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999985
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.4e-39 Score=344.07 Aligned_cols=249 Identities=28% Similarity=0.329 Sum_probs=173.7
Q ss_pred ccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhcccccC
Q 048043 141 GVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 141 gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
.|+|||||||||++||+|.++-...... + .....+ ......... ......|..||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~-~----~~~~~~----~~~~~~~~~--~~~~~~d~~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKN-L----VPKGGY----DGKEAGETG--DINDIVDKLGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccc-c----ccCCCc----CCccccccC--CCCcCCCCCCcHhHHHHHHhcCCC-
Confidence 4899999999999999999532111000 0 000000 000000000 013446779999999999998631
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCC--------CCHHHHH
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFF--------EDPLAIG 291 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~--------~~~~~~a 291 (742)
..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||....... ...+..+
T Consensus 69 -----------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~ 137 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKA 137 (294)
T ss_pred -----------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHH
Confidence 15999999999999998877 488899999999999999999999997542211 1345666
Q ss_pred HHHhhcCCcEEEEecCCCCCCCCC----------------------CCCCCCceEEecccCCcceeEEEEEeCCCeeEee
Q 048043 292 SFSAIQKEIFVSCSAGNEGPNPST----------------------SSNEAPWILSVGASTTDRSIVASVELGNQAVYDG 349 (742)
Q Consensus 292 ~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~ 349 (742)
+..+.++|++||+||||+|..... .+...+++|+||+
T Consensus 138 i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga--------------------- 196 (294)
T cd07482 138 INYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSA--------------------- 196 (294)
T ss_pred HHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEe---------------------
Confidence 667788999999999999865321 1122233333333
Q ss_pred eeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc
Q 048043 350 EALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST 429 (742)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 429 (742)
T Consensus 197 -------------------------------------------------------------------------------- 196 (294)
T cd07482 197 -------------------------------------------------------------------------------- 196 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEecc
Q 048043 430 LADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAW 509 (742)
Q Consensus 430 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~ 509 (742)
....+.++.||++|+.. +|++|||+++....
T Consensus 197 ------------------------------------------~~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~ 227 (294)
T cd07482 197 ------------------------------------------TDNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLD 227 (294)
T ss_pred ------------------------------------------eCCCCCcCccccCCCCc-------ceEECCCCCccccc
Confidence 12334677899998754 49999999885322
Q ss_pred CCCc---c----------CCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHcc
Q 048043 510 PFSV---E----------NKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSP-AAIKSAIMTT 562 (742)
Q Consensus 510 ~~~~---~----------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~-~~ik~~L~~T 562 (742)
.... . ......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 228 QYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 1110 0 01123467899999999999999999999999999999 9999999986
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=334.55 Aligned_cols=380 Identities=24% Similarity=0.318 Sum_probs=275.4
Q ss_pred CCCCceEEEEECCCCCCCCcchhccchHHHHHhhccccccc--CCCCCCceEEEEcceeeEEEEEcC-----HHHHHHhh
Q 048043 27 TDSLETYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISS--SINNQPRMLYCYKNVITGFAAKLT-----AEQAKAME 99 (742)
Q Consensus 27 ~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~y~~~~~g~s~~~~-----~~~i~~L~ 99 (742)
...+.+|||.|+... . +..++..+++.|+..... ..-........|..-|.-+-++-. .-+|++|.
T Consensus 46 tvve~EyIv~F~~y~---~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe 118 (1033)
T KOG4266|consen 46 TVVESEYIVRFKQYK---P----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLE 118 (1033)
T ss_pred eeecceeEEEecccc---c----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehh
Confidence 344678999999977 2 223455556555432100 001122333455555655555432 23589999
Q ss_pred cCCCeEEEEeceeeccccC------------------------------CCCCccCcc------------CCCCCccCCC
Q 048043 100 TKEGFISAHVEKTLQLHTT------------------------------HTPNFLGLH------------QNSGFWKDSN 137 (742)
Q Consensus 100 ~~p~V~~V~~~~~~~~~~~------------------------------~s~~~~g~~------------~~~~~~~~~~ 137 (742)
.+|.|+.|.|.+.+..... ..+.-|+-. .+.-+|+.|+
T Consensus 119 ~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 119 MHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred cCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 9999999999765543100 000001100 0345899999
Q ss_pred CCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhccc
Q 048043 138 LGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 138 ~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
||++|+|||.|||+.-+||.|+.- ....++.+. ....|..||||.|||+|||.
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnv------------------------KERTNWTNE---~tLdD~lgHGTFVAGvia~~ 251 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNV------------------------KERTNWTNE---DTLDDNLGHGTFVAGVIAGR 251 (1033)
T ss_pred cCCceEEEEeecccccCCccccch------------------------hhhcCCcCc---cccccCcccceeEeeeeccc
Confidence 999999999999999999999831 111223322 45667899999999999987
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhhhCCCcEEEEccCCCCCCCCCCHHHHHHHHhh
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAIDDGVDVLSLSLGAASVPFFEDPLAIGSFSAI 296 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~ 296 (742)
. ...|.||+++|+++|||.+.. .+.++.++|++||+....||+|+|+|++. +.+.++-+-+....
T Consensus 252 ~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwElt 317 (1033)
T KOG4266|consen 252 N------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELT 317 (1033)
T ss_pred h------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhc
Confidence 4 237999999999999998876 78899999999999999999999999984 55667777777888
Q ss_pred cCCcEEEEecCCCCCCCCCCCCCC--CceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCC
Q 048043 297 QKEIFVSCSAGNEGPNPSTSSNEA--PWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNV 374 (742)
Q Consensus 297 ~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (742)
..++++|.|+||+|+-..+..+++ ..||.||.
T Consensus 318 AnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG---------------------------------------------- 351 (1033)
T KOG4266|consen 318 ANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG---------------------------------------------- 351 (1033)
T ss_pred cCcEEEEEecCCCCcceeecCCcccccceeeecc----------------------------------------------
Confidence 999999999999999877665433 33444443
Q ss_pred CCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHh
Q 048043 375 SSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 375 ~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEeceeEecccCCCccccccCCCCCC----CCCCCcccceEecCCcEEeccCCCccCCCCCcccceeecccc
Q 048043 455 STSSPNATIVFKGTVIGKKSTPELASFSSRGPSI----ASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTS 530 (742)
Q Consensus 455 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTS 530 (742)
.+.++.+|.|||||-+. ...||+||||++-|.+|...... .+....||||
T Consensus 352 -----------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTS 405 (1033)
T KOG4266|consen 352 -----------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTS 405 (1033)
T ss_pred -----------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCc
Confidence 23345899999999764 12489999999999999877655 6778899999
Q ss_pred chhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccCcCCcCCCCc-----
Q 048043 531 MSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVNPSSANDPGL----- 601 (742)
Q Consensus 531 mAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~l----- 601 (742)
.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++... .-++||+|++|+.++.+--+
T Consensus 406 VaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syqiL~SYkP~ 473 (1033)
T KOG4266|consen 406 VASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQILKSYKPR 473 (1033)
T ss_pred ccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHHHHHhcCCC
Confidence 999999999999976 334468999999999999998542 34789999999988754211
Q ss_pred ------cccCCCCCcccccccCC
Q 048043 602 ------IYDIQPDDYIPYLCGLN 618 (742)
Q Consensus 602 ------v~~~~~~d~~~~~~~~~ 618 (742)
..|-+...|+..+|++.
T Consensus 474 asl~PsylD~t~cpYmWPycsQP 496 (1033)
T KOG4266|consen 474 ASLFPSYLDYTDCPYMWPYCSQP 496 (1033)
T ss_pred ceecchhcccccCcccCccccCc
Confidence 23555566777777765
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=3.1e-38 Score=330.56 Aligned_cols=242 Identities=27% Similarity=0.338 Sum_probs=186.1
Q ss_pred CCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCCchhhhhhhccc
Q 048043 138 LGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGHGTHTATTAAGN 217 (742)
Q Consensus 138 ~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gHGThVAGiiaG~ 217 (742)
+|+||+|+|||+||+.+||+|.+......... ...........|..+|||||||||+|+
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV---------------------AVNDAGYASNGDGDSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc---------------------ccccccCCCCCCCCChHHHHHHHHhcC
Confidence 69999999999999999999986522110000 000000134567899999999999988
Q ss_pred ccCCCcccccCCcceeeecCcceEEEEEEeccCC--CCHHHHHHHHHHhhhCCCcEEEEccCCCCCC------------C
Q 048043 218 FVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDG--CSESRVYAAMDTAIDDGVDVLSLSLGAASVP------------F 283 (742)
Q Consensus 218 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~------------~ 283 (742)
..+ ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||..... .
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 130 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAAT 130 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccc
Confidence 532 3347999999999999998764 5667789999999999999999999987522 1
Q ss_pred CCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCC---------CCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccC
Q 048043 284 FEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTS---------SNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQ 354 (742)
Q Consensus 284 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~ 354 (742)
....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~---------------------- 188 (267)
T cd04848 131 QGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN---------------------- 188 (267)
T ss_pred cchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC----------------------
Confidence 455667777788899999999999998654332 2345778888874321
Q ss_pred CCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCc
Q 048043 355 PKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPH 434 (742)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 434 (742)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCcccc--ccCCCCCCCCCCCcccceEecCCcEEeccCCC
Q 048043 435 LLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELAS--FSSRGPSIASPGILKPDIIGPGVNILAAWPFS 512 (742)
Q Consensus 435 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 512 (742)
+.... ||++|+.. ..++++|||.+|.++.+..
T Consensus 189 -----------------------------------------~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~ 222 (267)
T cd04848 189 -----------------------------------------GTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG 222 (267)
T ss_pred -----------------------------------------CCcccccccccchhh-----hhheeecCcCceeecccCC
Confidence 12233 48888654 2347999999999988731
Q ss_pred ccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 513 VENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 513 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
. ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 223 ~-------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 G-------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred C-------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1 68899999999999999999999999999999999999999985
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-33 Score=307.92 Aligned_cols=354 Identities=22% Similarity=0.257 Sum_probs=232.2
Q ss_pred CCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccC-C--CCHHHHHHHHHHhhhCCCcEEEEccCCCC
Q 048043 204 EGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD-G--CSESRVYAAMDTAIDDGVDVLSLSLGAAS 280 (742)
Q Consensus 204 ~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~~VIn~SlG~~~ 280 (742)
.-|||||||||+|+..+.- ...||||+|+|+++++.+.. | .+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p--------~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETP--------ELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCc--------cccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 4599999999999965431 24699999999999997754 2 45567899999999999999999999875
Q ss_pred -CCCCCCHHHHHHHHhhcCCcEEEEecCCCCCCCCCCC---CCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCC
Q 048043 281 -VPFFEDPLAIGSFSAIQKEIFVSCSAGNEGPNPSTSS---NEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPK 356 (742)
Q Consensus 281 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~---~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 356 (742)
.+.....++.+-....++|+++|.||||.|+...+++ +....+|.|||.-.....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm--------------------- 440 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM--------------------- 440 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH---------------------
Confidence 4555566665555566899999999999999877665 345578888883111000
Q ss_pred CCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccc
Q 048043 357 DFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLL 436 (742)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~ 436 (742)
...|.
T Consensus 441 ---~a~y~------------------------------------------------------------------------ 445 (1304)
T KOG1114|consen 441 ---QAEYS------------------------------------------------------------------------ 445 (1304)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00000
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCC
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENK 516 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 516 (742)
.. ..-......+|||||+. ||.+-..|+|||+.|.+- |.+..
T Consensus 446 ---------------~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~tl-- 487 (1304)
T KOG1114|consen 446 ---------------VR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYTL-- 487 (1304)
T ss_pred ---------------hh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhhh--
Confidence 00 01123577899999999 788899999999999663 33221
Q ss_pred CCCcccceeeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCcccccccC
Q 048043 517 TNTKSTFNMVAGTSMSCPHLSGVAALLKS----AHPDWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAGHVN 592 (742)
Q Consensus 517 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd 592 (742)
..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++.. .++.+|.|+++
T Consensus 488 ----q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~Gmlq 551 (1304)
T KOG1114|consen 488 ----QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGMLQ 551 (1304)
T ss_pred ----hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCcceee
Confidence 4557899999999999999999864 567899999999999999998543 46899999999
Q ss_pred cCCcCCCCccccCCCCCccccc-ccCCCC-ccceeEEEeeeeeccCCCCCCcccCCCCceeeeeCCccEEEEEEEEeeCC
Q 048043 593 PSSANDPGLIYDIQPDDYIPYL-CGLNYS-DQHVQDIVMINVQCSKVSGIAETELNYPSFSVILGSTSQTYNRTVTNVGQ 670 (742)
Q Consensus 593 ~~~Al~~~lv~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~n~~~ 670 (742)
+++|.+--.-.+.....-+.|+ -..+.+ ...|.. ++++.|. - ...+++-|.-.-.
T Consensus 552 VdkAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyL--Rep~~~~-----------~----------p~e~~i~VePiF~ 608 (1304)
T KOG1114|consen 552 VDKAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYL--REPTQVC-----------S----------PSEHTIGVEPIFE 608 (1304)
T ss_pred hhHHHHHHHHhhhcCCccceeEEEeeccccccceEe--cCCcccC-----------C----------ccccceecccccc
Confidence 9999762111111111112220 000000 111111 1111111 0 1122222211100
Q ss_pred -------CCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEc-----CceEEEEeEE
Q 048043 671 -------AESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVS-----TKHTVRSPIA 738 (742)
Q Consensus 671 -------~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~-----~~~~v~~p~~ 738 (742)
+...|.+....-....+.-.|..+-+ .++.+.+.|++++..... +.+++.|.--| .++-+|+|+.
T Consensus 609 ~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~-G~hy~eV~gyD~~~p~~gplFrIPVT 685 (1304)
T KOG1114|consen 609 NGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAP-GVHYTEVLGYDTANPSRGPLFRIPVT 685 (1304)
T ss_pred CccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCCC-CcceEEEEEeecCCcccCceEEeeeE
Confidence 11223322222111223334777766 378899999999998766 68888887543 6899999999
Q ss_pred EEe
Q 048043 739 VRF 741 (742)
Q Consensus 739 v~~ 741 (742)
|..
T Consensus 686 Vi~ 688 (1304)
T KOG1114|consen 686 VIK 688 (1304)
T ss_pred EEc
Confidence 864
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-33 Score=287.50 Aligned_cols=194 Identities=23% Similarity=0.186 Sum_probs=142.6
Q ss_pred CCCCCCCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHh--hhCCCcEEEEccC
Q 048043 200 PLDDEGHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTA--IDDGVDVLSLSLG 277 (742)
Q Consensus 200 ~~d~~gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~~VIn~SlG 277 (742)
..|..+|||||||||||. .|++|+++|+..++... ....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457999999999999987 46779999997665322 233466778888 6679999999999
Q ss_pred CCCCCC------CCCHHHHHHHHhhcC-CcEEEEecCCCCCCC-----CCCCCCCCceEEecccCCcceeEEEEEeCCCe
Q 048043 278 AASVPF------FEDPLAIGSFSAIQK-EIFVSCSAGNEGPNP-----STSSNEAPWILSVGASTTDRSIVASVELGNQA 345 (742)
Q Consensus 278 ~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~g~ 345 (742)
...... ..+.+..++..+.++ |+++|+||||+|... ...+...+++|+|||......
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 864321 233566666666666 999999999999853 234566788999998532110
Q ss_pred eEeeeeccCCCCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCC
Q 048043 346 VYDGEALFQPKDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLN 425 (742)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~ 425 (742)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcE
Q 048043 426 GYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNI 505 (742)
Q Consensus 426 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I 505 (742)
....+.||++|-....+++.||||+|||++|
T Consensus 164 -------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i 194 (247)
T cd07488 164 -------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNY 194 (247)
T ss_pred -------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeE
Confidence 0023455665433323678999999999999
Q ss_pred EeccCCCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHcc
Q 048043 506 LAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHPDWSP------AAIKSAIMTT 562 (742)
Q Consensus 506 ~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~------~~ik~~L~~T 562 (742)
++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.+
T Consensus 195 ~s--~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 195 NL--PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EC--CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 98 33 57889999999999999999999999887764 3566666654
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=4.2e-31 Score=271.18 Aligned_cols=233 Identities=39% Similarity=0.558 Sum_probs=176.8
Q ss_pred cEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCC-CCCCCCCCCCchhhhhhhcccccC
Q 048043 142 VIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGST-GEPPLDDEGHGTHTATTAAGNFVN 220 (742)
Q Consensus 142 V~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~-~~~~~d~~gHGThVAGiiaG~~~~ 220 (742)
|+|+|||+||+++||+|.... .... ...++....+ .....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~---------~~~~-----------~~~~~~~~~~~~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLF---------GGGD-----------GGNDDDDNENGPTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhccc---------cCcc-----------cccccccCcCCCCCCCCCCCcHHHHHHHHhcCCCC
Confidence 689999999999999872110 0000 0011111100 023457889999999999987532
Q ss_pred CCcccccCCcceeeecCcceEEEEEEeccCC-CCHHHHHHHHHHhh-hCCCcEEEEccCCCCCCCCCCHHHHHHHHhhcC
Q 048043 221 GANVFGQADGTAVGIAPLAHLAIYKVCDFDG-CSESRVYAAMDTAI-DDGVDVLSLSLGAASVPFFEDPLAIGSFSAIQK 298 (742)
Q Consensus 221 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~~VIn~SlG~~~~~~~~~~~~~a~~~a~~~ 298 (742)
.. ..|+||+++|+.+|+....+ .....+++++++++ .++++|||||||..... ....+...+.++.++
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~~~ 130 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYALAK 130 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 11 16999999999999998766 67788999999999 89999999999987533 345666777777777
Q ss_pred -CcEEEEecCCCCCCCC---CCCCCCCceEEecccCCcceeEEEEEeCCCeeEeeeeccCCCCCCCCceeEEecCCCCCC
Q 048043 299 -EIFVSCSAGNEGPNPS---TSSNEAPWILSVGASTTDRSIVASVELGNQAVYDGEALFQPKDFPSKQFPLIYPGANGNV 374 (742)
Q Consensus 299 -Gi~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (742)
|+++|+|+||.+.... ..+...+++|+||+.+.+.
T Consensus 131 ~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------------------------------- 169 (241)
T cd00306 131 LGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------------------------------- 169 (241)
T ss_pred cCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------------------------------
Confidence 9999999999998876 4778899999999853221
Q ss_pred CCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHh
Q 048043 375 SSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 375 ~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeEEEEeceeEecccCCCccc-cccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchh
Q 048043 455 STSSPNATIVFKGTVIGKKSTPELA-SFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSC 533 (742)
Q Consensus 455 ~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 533 (742)
... .++++| .|||+.|||.++...... ....+..++||||||
T Consensus 170 ----------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-------~~~~~~~~~GTS~Aa 212 (241)
T cd00306 170 ----------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-------GGGGYATLSGTSMAA 212 (241)
T ss_pred ----------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-------CCCCeEeeccHHHHH
Confidence 111 344444 456999999999875111 126889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHcc
Q 048043 534 PHLSGVAALLKSAHPDWSPAAIKSAIMTT 562 (742)
Q Consensus 534 P~VAG~aALl~q~~p~~s~~~ik~~L~~T 562 (742)
|+|||++||++|++|++++.++|++|++|
T Consensus 213 p~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 213 PIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.9e-24 Score=243.77 Aligned_cols=273 Identities=35% Similarity=0.523 Sum_probs=198.0
Q ss_pred CCCCccC--CCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCCCCCCC
Q 048043 129 NSGFWKD--SNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPLDDEGH 206 (742)
Q Consensus 129 ~~~~~~~--~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~d~~gH 206 (742)
....|.. +++|+||+|+|||+||+..||+|.+.... .++|....+.....|..+|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~d~~~h 185 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-----------------------GGDFVDGDPEPPFLDDNGH 185 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc-----------------------ccccccCCCCCCCCCCCCC
Confidence 4457777 89999999999999999999999864211 1233333211125689999
Q ss_pred chhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccC-C-CCHHHHHHHHHHhhhCC--CcEEEEccCCCCCC
Q 048043 207 GTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFD-G-CSESRVYAAMDTAIDDG--VDVLSLSLGAASVP 282 (742)
Q Consensus 207 GThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~~VIn~SlG~~~~~ 282 (742)
||||+|++++.... + .....|++|+++++.+|++... | ....+++++++++++.+ +++||||+|.....
T Consensus 186 Gt~vag~ia~~~~~------~-~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~~~ 258 (508)
T COG1404 186 GTHVAGTIAAVIFD------N-GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSD 258 (508)
T ss_pred cceeeeeeeeeccc------C-CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCccc
Confidence 99999999984211 1 1124799999999999999866 5 77778899999999999 99999999986222
Q ss_pred CCCCHHHHHHHHhhcCC-cEEEEecCCCCCCCC----CCCCCC--CceEEecccCCcceeEEEEEeCCCeeEeeeeccCC
Q 048043 283 FFEDPLAIGSFSAIQKE-IFVSCSAGNEGPNPS----TSSNEA--PWILSVGASTTDRSIVASVELGNQAVYDGEALFQP 355 (742)
Q Consensus 283 ~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~g~~~~~~~~~~~ 355 (742)
.....+..++..++..| +++|+++||.+.+.. .++... +.+++||+..
T Consensus 259 ~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------------------------- 313 (508)
T COG1404 259 SASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------------------------- 313 (508)
T ss_pred cccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC-------------------------
Confidence 33445666666777777 999999999987752 122222 2555555521
Q ss_pred CCCCCCceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCCCcc
Q 048043 356 KDFPSKQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLADPHL 435 (742)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~ 435 (742)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCCCCCCCcccceEecCCcEEe-----ccC
Q 048043 436 LPAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSIASPGILKPDIIGPGVNILA-----AWP 510 (742)
Q Consensus 436 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s-----a~~ 510 (742)
..+.++.||++|+.. ..+++|||.+|.+ .++
T Consensus 314 --------------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~ 349 (508)
T COG1404 314 --------------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLP 349 (508)
T ss_pred --------------------------------------CCCccccccccCCCC------CcceeCCCccccccccceeee
Confidence 123678899999752 2299999999988 555
Q ss_pred CCccCCCCCcccceeeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHcccccccCCCCccccCCCCCCCCCccccc
Q 048043 511 FSVENKTNTKSTFNMVAGTSMSCPHLSGVAALLKSAHP-DWSPAAIKSAIMTTADIVSLDGKPIVDQRLLPADMFAVGAG 589 (742)
Q Consensus 511 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 589 (742)
+.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .. .......++.|
T Consensus 350 ~~~-------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~ 411 (508)
T COG1404 350 GDG-------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-TP----------LSGVDNLVGGG 411 (508)
T ss_pred CCc-------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-cc----------CCccccccccC
Confidence 410 2499999999999999999999999999 89999999998888874 00 01233456666
Q ss_pred ccCcCCcCC
Q 048043 590 HVNPSSAND 598 (742)
Q Consensus 590 ~vd~~~Al~ 598 (742)
..+...+..
T Consensus 412 ~~~~~~~~~ 420 (508)
T COG1404 412 LANLDAAAT 420 (508)
T ss_pred ccccccccc
Confidence 666555443
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-21 Score=196.39 Aligned_cols=169 Identities=18% Similarity=0.263 Sum_probs=108.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCCCC--C--CC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEPPL--D--DE 204 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~~~--d--~~ 204 (742)
...+|..|++|++|++||+|.||||-|||++.+ ..--..++|...+..+.|+ | .+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssndpfpyprytddwfn 208 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSNDPFPYPRYTDDWFN 208 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCCCCCCCcccchhhh
Confidence 356899999999999999999999999999843 1122234555443212222 2 47
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh-CCCcEEEEccCCCCCC-
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID-DGVDVLSLSLGAASVP- 282 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~~~- 282 (742)
.|||.|||-+++...+ +.+| .|||.+.++..+|+++. .+..|+++|-..-.+ ...+|.+.|||.....
T Consensus 209 shgtrcagev~aardn--gicg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgk 278 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDN--GICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGK 278 (629)
T ss_pred ccCccccceeeeeccC--Ccee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCc
Confidence 8999999988776432 2223 69999999999999876 455666665433222 2468999999976422
Q ss_pred CCC---CHHHHHHHHhhc-----CCcEEEEecCCCCCCC-CCCC--CCCCceEEecc
Q 048043 283 FFE---DPLAIGSFSAIQ-----KEIFVSCSAGNEGPNP-STSS--NEAPWILSVGA 328 (742)
Q Consensus 283 ~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~-~~~~--~~~p~vitVga 328 (742)
..+ ++..+++-+-++ .|-++|.|.|..|.+. +... +.+-|.|++-+
T Consensus 279 tvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 279 TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 222 223333333333 4679999999988552 2222 33445555543
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=3.1e-17 Score=178.35 Aligned_cols=100 Identities=22% Similarity=0.248 Sum_probs=80.4
Q ss_pred eeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhC---CCcEEEEccCCCCCC---CCCCHHHHHHHHhhcCCcEEEEe
Q 048043 232 AVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDD---GVDVLSLSLGAASVP---FFEDPLAIGSFSAIQKEIFVSCS 305 (742)
Q Consensus 232 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~~VIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~vV~A 305 (742)
+.||||+|+|+.|++.+.. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+|++||+|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaA 159 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAA 159 (361)
T ss_pred HHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 5799999999999997653 35677888888877 999999999987432 12356777778899999999999
Q ss_pred cCCCCCCCC-----------CCCCCCCceEEecccCCcce
Q 048043 306 AGNEGPNPS-----------TSSNEAPWILSVGASTTDRS 334 (742)
Q Consensus 306 AGN~g~~~~-----------~~~~~~p~vitVga~~~~~~ 334 (742)
+||+|.... .+++..|+|++||+++....
T Consensus 160 sGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 160 SGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999997653 35688999999999866543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.20 E-value=1.3e-10 Score=109.22 Aligned_cols=117 Identities=30% Similarity=0.468 Sum_probs=92.3
Q ss_pred CCCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccCC-Cccc
Q 048043 359 PSKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLAD-PHLL 436 (742)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-~~~~ 436 (742)
.....+++|.+. |...++. .+++|||+||+|+.|.+.+|..+++.+||.++|++++.......... ...+
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 345788888654 3344445 67999999999999999999999999999999999887543222222 3568
Q ss_pred cEEEEehhhHHHHHHHHhcCCCCeEEEEeceeEecccCCCccccccCCCCCC
Q 048043 437 PAVHVSYAAGESIKAYINSTSSPNATIVFKGTVIGKKSTPELASFSSRGPSI 488 (742)
Q Consensus 437 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 488 (742)
|.+.|+..+|..|++++.+ ++++.+..+.. ..+.+.++.||||||+.
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999987 66777777655 45778899999999973
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.17 E-value=3.9e-10 Score=103.82 Aligned_cols=121 Identities=52% Similarity=0.920 Sum_probs=97.0
Q ss_pred EEeCCCeeEeeeeccCCCCCCCCceeEEecCC-CCCCCCCCcCCCCCC-CCccceEEEeecCCc-chhhhhHHHhhcCCe
Q 048043 339 VELGNQAVYDGEALFQPKDFPSKQFPLIYPGA-NGNVSSAQCSPGSLS-SNIRGKLVLCERGGG-ERTKKGQVVKDAGGI 415 (742)
Q Consensus 339 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~-~~~~~~~~~~~~g~~ 415 (742)
+.++||+.+.|++++++.. ..+++++... ........|.+..++ .+++|||++|+++.| .+.++..+++.+||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 5789999999999996543 4567766333 223345789888887 899999999999999 889999999999999
Q ss_pred EEEEeccCCCCccccCCCccccEEEEehhhHHHHHHHHhcCCCCeEE
Q 048043 416 GMILMNDKLNGYSTLADPHLLPAVHVSYAAGESIKAYINSTSSPNAT 462 (742)
Q Consensus 416 ~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 462 (742)
|+|++++.............+|.+.|+.++|..|++|+++..+++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999886554333333567999999999999999999987766554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.92 E-value=2.2e-09 Score=90.78 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=59.4
Q ss_pred eEEEEECCCCCCCCcchhccchHHHHHhhcccccccCCCCCCceEEEEcceeeEEEEEcCHHHHHHhhcCCCeEEEEece
Q 048043 32 TYIVYVRKPDQDQATTSIKLDLDSWYHSFLPVSISSSINNQPRMLYCYKNVITGFAAKLTAEQAKAMETKEGFISAHVEK 111 (742)
Q Consensus 32 ~yIV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~i~~L~~~p~V~~V~~~~ 111 (742)
+|||.|++.. ........+.+++.+++.+..........++.+.|...|+||+++++++++++|+++|+|++|+|+.
T Consensus 1 ~YIV~~k~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~ 77 (82)
T PF05922_consen 1 RYIVVFKDDA---SAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQ 77 (82)
T ss_dssp EEEEEE-TTS---THHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEEC
T ss_pred CEEEEECCCC---CcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCc
Confidence 6999999987 4433356677777766554221102568899999999999999999999999999999999999999
Q ss_pred eeccc
Q 048043 112 TLQLH 116 (742)
Q Consensus 112 ~~~~~ 116 (742)
.++++
T Consensus 78 ~v~l~ 82 (82)
T PF05922_consen 78 VVSLH 82 (82)
T ss_dssp EEEE-
T ss_pred eEecC
Confidence 88763
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.4e-07 Score=103.80 Aligned_cols=154 Identities=18% Similarity=0.170 Sum_probs=99.4
Q ss_pred CCCCccCCCCCCccEEEEEcccCCCCCCCCCCCCCCCCCCccccccccCccccCccccceeecCCCCCCCC----CCCCC
Q 048043 129 NSGFWKDSNLGKGVIIGVMDTGITPGHPSFSDEGMPPPPAKWKGKCEFKGAACNNKLIGARNFLQGSTGEP----PLDDE 204 (742)
Q Consensus 129 ~~~~~~~~~~G~gV~VaVIDtGid~~Hp~f~~~g~~~~~~~~~g~~~~g~~f~n~ki~~~~~~~~~~~~~~----~~d~~ 204 (742)
....|..+++|+++.|+|.|+|++..||+.... ....+.+++....+... .....
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDNDPEPRCDGTNEN 80 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCCCcccccCCCCcc
Confidence 556999999999999999999999999999842 22334444444332111 12357
Q ss_pred CCchhhhhhhcccccCCCcccccCCcceeeecCcceEEEEEEeccCCCCHHHHHHHHHHhhh-CCCcEEEEccCCCCCC-
Q 048043 205 GHGTHTATTAAGNFVNGANVFGQADGTAVGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAID-DGVDVLSLSLGAASVP- 282 (742)
Q Consensus 205 gHGThVAGiiaG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~~VIn~SlG~~~~~- 282 (742)
.|||-|++-.+....+ .--..|+++++++..++++... .++...+...... .-.++-..|||.....
T Consensus 81 ~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~---v~~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC---VSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred ccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee---cccceecccccCCCCCceeecCcCCcccCCC
Confidence 8999999999977411 1112699999999999998642 1223333333333 3468999999975421
Q ss_pred ---CCCCHHHHHHHH-----hhcCCcEEEEecCCCCCCCC
Q 048043 283 ---FFEDPLAIGSFS-----AIQKEIFVSCSAGNEGPNPS 314 (742)
Q Consensus 283 ---~~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~~~ 314 (742)
........+... ...+|-+.|+|.||.|....
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 111222222222 23578899999999886643
No 48
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.61 E-value=2.6e-07 Score=83.36 Aligned_cols=88 Identities=22% Similarity=0.277 Sum_probs=70.8
Q ss_pred CCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC-cccc---C----CCccccEEEEehhhHH
Q 048043 376 SAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG-YSTL---A----DPHLLPAVHVSYAAGE 447 (742)
Q Consensus 376 ~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~-~~~~---~----~~~~~p~~~i~~~~g~ 447 (742)
.+.|.+.....+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .... . ....+|+++|+..+|+
T Consensus 21 ~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~ 100 (118)
T cd02127 21 LEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGY 100 (118)
T ss_pred cccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHH
Confidence 467986433378999999999999999999999999999999999976542 1111 1 2347999999999999
Q ss_pred HHHHHHhcCCCCeEEE
Q 048043 448 SIKAYINSTSSPNATI 463 (742)
Q Consensus 448 ~l~~~~~~~~~~~~~i 463 (742)
.|++.+..+..+++.+
T Consensus 101 ~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 101 MIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHcCCceEEee
Confidence 9999999888776654
No 49
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.60 E-value=6.3e-07 Score=80.54 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=58.1
Q ss_pred CccEEEEEEEEeeCCCCceEEEEEEC--------CCC----------c-EEEEEcCeeEecCCCcEEEEEEEEEEcc-C-
Q 048043 656 STSQTYNRTVTNVGQAESSYTHKIVA--------PEG----------V-TVTVEPENISFTKKNQKAIYSITFTRSQ-K- 714 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y~~~~~~--------p~~----------~-~v~v~p~~~~~~~~g~~~~~~v~~~~~~-~- 714 (742)
+...+++++|+|.|+++.+|++++.. ..| . .+...|..++++| |++++++|+|+++. .
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~ 85 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLD 85 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGH
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCC
Confidence 44689999999999999999998761 011 1 6777899999999 99999999999965 2
Q ss_pred -CCCceEEEEEEEEc-Cc-eEEEEeEE
Q 048043 715 -TSALFAQGYLSWVS-TK-HTVRSPIA 738 (742)
Q Consensus 715 -~~~~~~~G~i~~~~-~~-~~v~~p~~ 738 (742)
....+++|+|.+++ ++ ..+++||.
T Consensus 86 ~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 86 ASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp HTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 33589999999994 45 49999984
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.57 E-value=4.7e-07 Score=81.18 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=72.6
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc--cc--CCCc
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS--TL--ADPH 434 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~--~~~~ 434 (742)
...+|++.... ...|.+..+. .+++|+|+|++||.|+|.+|..+++.+||.++|++|+...... .. ....
T Consensus 19 ~~~~~~~~~~~-----~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 19 ATLLPLRNLTS-----SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred CcceeeecCCC-----cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 34577766654 3669988887 7899999999999999999999999999999999998753111 11 1345
Q ss_pred cccEEEEehhhHHHHHHHHh
Q 048043 435 LLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 435 ~~p~~~i~~~~g~~l~~~~~ 454 (742)
.||+++|+..+|+.|++.+.
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFG 113 (120)
T ss_pred cccEEEEeHHHHHHHHHHhc
Confidence 68999999999999998876
No 51
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.57 E-value=8.9e-07 Score=81.20 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=73.3
Q ss_pred eeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-cCCCccccEEE
Q 048043 363 FPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-LADPHLLPAVH 440 (742)
Q Consensus 363 ~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-~~~~~~~p~~~ 440 (742)
+|++..........+.|.+.+.+ .+++|+|+|++||.|.+.+|..+++++|+.++|++|+.+..... ..+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 67666655555566889987777 78999999999999999999999999999999999886542211 12233456565
Q ss_pred EehhhHHHHHHHHhcCCC
Q 048043 441 VSYAAGESIKAYINSTSS 458 (742)
Q Consensus 441 i~~~~g~~l~~~~~~~~~ 458 (742)
+ ..+|+.|++.+..+..
T Consensus 108 ~-~~~G~~l~~~l~~G~~ 124 (129)
T cd02124 108 T-PEDGEAWIDALAAGSN 124 (129)
T ss_pred e-HHHHHHHHHHHhcCCe
Confidence 5 9999999999976654
No 52
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.54 E-value=4.2e-07 Score=84.35 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=71.0
Q ss_pred CCCCcCCCCC--C-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc----CCCccccEEEEehhhHH
Q 048043 375 SSAQCSPGSL--S-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL----ADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 375 ~~~~c~~~~~--~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~ 447 (742)
..+.|.+... . .++.|+|+|++||.|.|.+|..+++.+||.++|++|+...+...+ .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3567988877 4 789999999999999999999999999999999999876222111 12346899999999999
Q ss_pred HHHHHHhcCCCCeE
Q 048043 448 SIKAYINSTSSPNA 461 (742)
Q Consensus 448 ~l~~~~~~~~~~~~ 461 (742)
.|+.++.++.+.++
T Consensus 123 ~l~~~l~~G~~Vtv 136 (138)
T cd02122 123 EILELLERGISVTM 136 (138)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999987765444
No 53
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.53 E-value=3.6e-07 Score=83.42 Aligned_cols=83 Identities=23% Similarity=0.408 Sum_probs=68.9
Q ss_pred CCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc---ccC--CCccccEEEEehhhHHHH
Q 048043 376 SAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS---TLA--DPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 376 ~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 449 (742)
.+.|.+..+. .+++|||+||+|+.|.+.+|..+++++||.++|++|+...... ... ....+|.++|+..+|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 4679888777 7899999999999999999999999999999999987663211 111 345699999999999999
Q ss_pred HHHHhcCCC
Q 048043 450 KAYINSTSS 458 (742)
Q Consensus 450 ~~~~~~~~~ 458 (742)
++++.++.+
T Consensus 109 ~~~l~~g~~ 117 (122)
T cd04816 109 RRRLGAGET 117 (122)
T ss_pred HHHHcCCCE
Confidence 999976654
No 54
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.51 E-value=6.3e-07 Score=81.38 Aligned_cols=86 Identities=27% Similarity=0.405 Sum_probs=69.6
Q ss_pred CCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc-cc---CCCccccEEEEehhhHHHHH
Q 048043 375 SSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS-TL---ADPHLLPAVHVSYAAGESIK 450 (742)
Q Consensus 375 ~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~---~~~~~~p~~~i~~~~g~~l~ 450 (742)
..+.|.+.....+++|||+||+|+.|.+.+|..+++.+|+.++|++++...... .. .....+|.+.|+.++|..|+
T Consensus 26 ~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~ 105 (118)
T cd04818 26 NTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALK 105 (118)
T ss_pred cccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHH
Confidence 456798877766699999999999999999999999999999999987664211 11 12357999999999999999
Q ss_pred HHHhcCCCCe
Q 048043 451 AYINSTSSPN 460 (742)
Q Consensus 451 ~~~~~~~~~~ 460 (742)
+|+..+...+
T Consensus 106 ~~l~~g~~v~ 115 (118)
T cd04818 106 AALAAGGTVT 115 (118)
T ss_pred HHHhcCCcEE
Confidence 9998766433
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.45 E-value=1.4e-06 Score=79.64 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=66.8
Q ss_pred CCCcCCCCCC--C-----CccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-----------cCCCcccc
Q 048043 376 SAQCSPGSLS--S-----NIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-----------LADPHLLP 437 (742)
Q Consensus 376 ~~~c~~~~~~--~-----~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-----------~~~~~~~p 437 (742)
.+.|.+.... . ...++|+|++||+|.|.+|..+++.+||.++|++|+.+..... ..+...+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 3568766553 2 3788999999999999999999999999999999986532110 11234699
Q ss_pred EEEEehhhHHHHHHHHhcCCCCe
Q 048043 438 AVHVSYAAGESIKAYINSTSSPN 460 (742)
Q Consensus 438 ~~~i~~~~g~~l~~~~~~~~~~~ 460 (742)
+++|+..+|+.|+..+..+...+
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~ 124 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVV 124 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEE
Confidence 99999999999999998776443
No 56
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.8e-06 Score=102.11 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=58.4
Q ss_pred eeecCcceEEEEEEeccCCCCHHHHHHHHHHhhhCCC-cEEEEccCCCC-----CCCCCCHHHHHHHHhhcCCcEEEEec
Q 048043 233 VGIAPLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGV-DVLSLSLGAAS-----VPFFEDPLAIGSFSAIQKEIFVSCSA 306 (742)
Q Consensus 233 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-~VIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV~AA 306 (742)
.-+||+|+|..|-. +. ........|+.+....=+ -++-.||+... .+..-+.++.....|..+|+.+++|+
T Consensus 289 ~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AAS 365 (1174)
T COG4934 289 HAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAAS 365 (1174)
T ss_pred hccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEec
Confidence 68999999999876 22 222223333333222211 33445666532 11133445555667889999999999
Q ss_pred CCCCCCCCC--------CCCCCCceEEecc
Q 048043 307 GNEGPNPST--------SSNEAPWILSVGA 328 (742)
Q Consensus 307 GN~g~~~~~--------~~~~~p~vitVga 328 (742)
|.+|....+ .++.+|++++||.
T Consensus 366 GD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 366 GDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccccccCCCcccceeecccCCCccEEeecC
Confidence 999866543 4578999999998
No 57
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.43 E-value=1.1e-06 Score=80.41 Aligned_cols=84 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred CCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC-----ccc--c-----CCCccccEEEEeh
Q 048043 376 SAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG-----YST--L-----ADPHLLPAVHVSY 443 (742)
Q Consensus 376 ~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~-----~~~--~-----~~~~~~p~~~i~~ 443 (742)
...|.+.....+++|||+|++||.|.|.+|..+++.+|+.++|++|+.... ... . .+...+|+++|+.
T Consensus 27 ~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~ 106 (126)
T cd02126 27 YRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFS 106 (126)
T ss_pred hhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEH
Confidence 356976554467899999999999999999999999999999999875432 111 1 1245789999999
Q ss_pred hhHHHHHHHHhcCCCC
Q 048043 444 AAGESIKAYINSTSSP 459 (742)
Q Consensus 444 ~~g~~l~~~~~~~~~~ 459 (742)
.+|+.|++.+..+...
T Consensus 107 ~dG~~L~~~l~~~~~~ 122 (126)
T cd02126 107 KEGSKLLAAIKEHQNV 122 (126)
T ss_pred HHHHHHHHHHHhCCce
Confidence 9999999999876543
No 58
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.43 E-value=3.7e-07 Score=80.33 Aligned_cols=76 Identities=37% Similarity=0.590 Sum_probs=60.6
Q ss_pred CcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC----CCccccCCCccccEEEEehhhHHHHHHH
Q 048043 378 QCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL----NGYSTLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 378 ~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
.|...... .+++|||+||+||.|.+.+|..+++.+||.++|+++... ...........+|+++|+.++|+.|++|
T Consensus 21 ~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~ 100 (101)
T PF02225_consen 21 DCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAY 100 (101)
T ss_dssp HHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHH
T ss_pred cccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhcc
Confidence 35555666 889999999999999999999999999999999999211 1222334467899999999999999988
Q ss_pred H
Q 048043 453 I 453 (742)
Q Consensus 453 ~ 453 (742)
+
T Consensus 101 i 101 (101)
T PF02225_consen 101 I 101 (101)
T ss_dssp H
T ss_pred C
Confidence 5
No 59
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.38 E-value=1.8e-06 Score=78.89 Aligned_cols=85 Identities=21% Similarity=0.324 Sum_probs=67.9
Q ss_pred CCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc----ccCCCccccEEEEehhhHHHHHHH
Q 048043 377 AQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS----TLADPHLLPAVHVSYAAGESIKAY 452 (742)
Q Consensus 377 ~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~~ 452 (742)
..|.+..+..+++|||+|++|+.|.+.+|..+++.+||.++|++|+...+.. ...+...+|.+.|+.++|+.|++.
T Consensus 32 ~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~ 111 (122)
T cd02130 32 LGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAA 111 (122)
T ss_pred CCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHH
Confidence 3587654445799999999999999999999999999999999988733221 112345799999999999999999
Q ss_pred HhcCCCCeE
Q 048043 453 INSTSSPNA 461 (742)
Q Consensus 453 ~~~~~~~~~ 461 (742)
+.++.+.++
T Consensus 112 l~~g~~v~~ 120 (122)
T cd02130 112 LANGGEVSA 120 (122)
T ss_pred HhcCCcEEE
Confidence 987765443
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.30 E-value=2.8e-06 Score=77.91 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=67.7
Q ss_pred CCCcCCCC--CC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCC-ccc-c----CCCccccEEEEehhhH
Q 048043 376 SAQCSPGS--LS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNG-YST-L----ADPHLLPAVHVSYAAG 446 (742)
Q Consensus 376 ~~~c~~~~--~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~-~~~-~----~~~~~~p~~~i~~~~g 446 (742)
...|.+.. +. .+++|||+||+|+.|.+.+|..+++.+||.|+|++++.... ... . .....+|.+.|+.++|
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 34587776 55 78999999999999999999999999999999999887532 111 1 1345799999999999
Q ss_pred HHHHHHHhcCCC
Q 048043 447 ESIKAYINSTSS 458 (742)
Q Consensus 447 ~~l~~~~~~~~~ 458 (742)
..|++++.++.+
T Consensus 110 ~~l~~~~~~~~~ 121 (126)
T cd00538 110 EALLSLLEAGKT 121 (126)
T ss_pred HHHHHHHhcCCc
Confidence 999999987554
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.28 E-value=4e-06 Score=78.22 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=66.1
Q ss_pred CCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcccc------CCCccccEEEEehhhHHHH
Q 048043 376 SAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTL------ADPHLLPAVHVSYAAGESI 449 (742)
Q Consensus 376 ~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~l 449 (742)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+........ .....+|+++|+..+|+.|
T Consensus 48 ~~gC~~~~--~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L 125 (139)
T cd02132 48 LDCCSPST--SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDAL 125 (139)
T ss_pred ccccCCCC--cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHH
Confidence 46787654 478999999999999999999999999999999998764321111 1135799999999999999
Q ss_pred HHHHhcCCCC
Q 048043 450 KAYINSTSSP 459 (742)
Q Consensus 450 ~~~~~~~~~~ 459 (742)
++.+..+...
T Consensus 126 ~~~l~~g~~V 135 (139)
T cd02132 126 NKSLDQGKKV 135 (139)
T ss_pred HHHHHcCCcE
Confidence 9999876643
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.26 E-value=4.3e-06 Score=75.26 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=64.4
Q ss_pred CCCCcCCCCCC-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc--cc----CCCccccEEEEehhhHH
Q 048043 375 SSAQCSPGSLS-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS--TL----ADPHLLPAVHVSYAAGE 447 (742)
Q Consensus 375 ~~~~c~~~~~~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~--~~----~~~~~~p~~~i~~~~g~ 447 (742)
..+.|.+. + .+++|+|+|++||+|.|.+|..+++.+||.++|++|+...... .. .....+|+++|+..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679765 5 8899999999999999999999999999999999987653211 11 23357999999999999
Q ss_pred HHHHHHhc
Q 048043 448 SIKAYINS 455 (742)
Q Consensus 448 ~l~~~~~~ 455 (742)
.|+.++..
T Consensus 104 ~L~~l~~~ 111 (117)
T cd04813 104 LLSSLLPK 111 (117)
T ss_pred HHHHhccc
Confidence 99988754
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.20 E-value=6.3e-06 Score=76.11 Aligned_cols=70 Identities=30% Similarity=0.523 Sum_probs=58.6
Q ss_pred CCccceEEEeecCCcc-----hhhhhHHHhhcCCeEEEEeccCC-CCcc--ccCC---CccccEEEEehhhHHHHHHHHh
Q 048043 386 SNIRGKLVLCERGGGE-----RTKKGQVVKDAGGIGMILMNDKL-NGYS--TLAD---PHLLPAVHVSYAAGESIKAYIN 454 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~-----~~~~~~~~~~~g~~~~i~~~~~~-~~~~--~~~~---~~~~p~~~i~~~~g~~l~~~~~ 454 (742)
.+++|||+|++||.|. |.+|..+++++||.++|+||+.. .+.. ...+ ...+|++.|+..+|+.|+..+.
T Consensus 53 ~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~ 132 (139)
T cd04817 53 GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAALG 132 (139)
T ss_pred CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHHhc
Confidence 5789999999999999 99999999999999999999973 2211 1122 4589999999999999999885
Q ss_pred c
Q 048043 455 S 455 (742)
Q Consensus 455 ~ 455 (742)
.
T Consensus 133 ~ 133 (139)
T cd04817 133 Q 133 (139)
T ss_pred C
Confidence 3
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.11 E-value=1.4e-05 Score=75.75 Aligned_cols=83 Identities=25% Similarity=0.287 Sum_probs=67.1
Q ss_pred CCCcCCCCC---C-CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCcc-ccC-----CCccccEEEEehhh
Q 048043 376 SAQCSPGSL---S-SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYS-TLA-----DPHLLPAVHVSYAA 445 (742)
Q Consensus 376 ~~~c~~~~~---~-~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~-~~~-----~~~~~p~~~i~~~~ 445 (742)
.+.|.+... + ..+.|+|+|++||.|.|.+|..+++.+||.++|++|+...... ... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 457876654 3 6889999999999999999999999999999999998653221 111 14589999999999
Q ss_pred HHHHHHHHhcCCC
Q 048043 446 GESIKAYINSTSS 458 (742)
Q Consensus 446 g~~l~~~~~~~~~ 458 (742)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999976653
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.74 E-value=0.0004 Score=63.76 Aligned_cols=90 Identities=18% Similarity=0.254 Sum_probs=68.1
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCc--chhhhhHHHhhcCCeEEEEeccCCCCccc-----c-
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGG--ERTKKGQVVKDAGGIGMILMNDKLNGYST-----L- 430 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~--~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-----~- 430 (742)
....+++|.+... ..++. .+++|||++++++.+ .+.+|..++..+||.++|++++....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 3467788876431 12233 569999999999999 88999999999999999999865442211 1
Q ss_pred -CCCccccEEEEehhhHHHHHHHHhcCC
Q 048043 431 -ADPHLLPAVHVSYAAGESIKAYINSTS 457 (742)
Q Consensus 431 -~~~~~~p~~~i~~~~g~~l~~~~~~~~ 457 (742)
.....+|++.|+.++|+.|.+.++.+.
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 223579999999999999999997643
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.15 E-value=0.0015 Score=60.52 Aligned_cols=74 Identities=11% Similarity=0.179 Sum_probs=58.7
Q ss_pred CCccceEEEeecCCc------chhhh-------hHHHhhcCCeEEEEeccCC-------CCcccc-CCCccccEEEEehh
Q 048043 386 SNIRGKLVLCERGGG------ERTKK-------GQVVKDAGGIGMILMNDKL-------NGYSTL-ADPHLLPAVHVSYA 444 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~------~~~~~-------~~~~~~~g~~~~i~~~~~~-------~~~~~~-~~~~~~p~~~i~~~ 444 (742)
.+++|||+++.++.| .+..| ...+.++||.++|+++... .+.... .....+|++.|+.+
T Consensus 36 ~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~e 115 (134)
T cd04815 36 GAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVE 115 (134)
T ss_pred hhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechh
Confidence 578999999999999 88777 6899999999999998642 222222 22346999999999
Q ss_pred hHHHHHHHHhcCCCC
Q 048043 445 AGESIKAYINSTSSP 459 (742)
Q Consensus 445 ~g~~l~~~~~~~~~~ 459 (742)
++..|...+..+...
T Consensus 116 d~~~L~r~l~~g~~v 130 (134)
T cd04815 116 DADMLERLAARGKPI 130 (134)
T ss_pred cHHHHHHHHhCCCCe
Confidence 999999998876543
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.89 E-value=0.033 Score=48.79 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=65.6
Q ss_pred CccEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEcCceEEEE
Q 048043 656 STSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVSTKHTVRS 735 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~~~~v~~ 735 (742)
+...+.+++|+|.|..+..|++..........+++|..-.+.| |++.+++|+|.+.... +.+.+.|.+..++..+.+
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~--g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL--GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC--ceEEEEEEEEECCeEEEE
Confidence 4467788999999999999998765433456778888878888 9999999999975543 468899998877778888
Q ss_pred eEEEE
Q 048043 736 PIAVR 740 (742)
Q Consensus 736 p~~v~ 740 (742)
|+-..
T Consensus 96 ~v~a~ 100 (102)
T PF14874_consen 96 PVKAE 100 (102)
T ss_pred EEEEE
Confidence 88665
No 68
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.06 E-value=0.014 Score=56.48 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc-------------cC---------------------
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST-------------LA--------------------- 431 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~-------------~~--------------------- 431 (742)
.+++|||+|+++|.|.+.+|..+++.+||+|+|+|++..+.... ..
T Consensus 52 v~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~ 131 (183)
T cd02128 52 VSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSS 131 (183)
T ss_pred CCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccccc
Confidence 47899999999999999999999999999999999874211000 00
Q ss_pred CCccccEEEEehhhHHHHHHHHhc
Q 048043 432 DPHLLPAVHVSYAAGESIKAYINS 455 (742)
Q Consensus 432 ~~~~~p~~~i~~~~g~~l~~~~~~ 455 (742)
.-..||+.-|+..++..|+..+.-
T Consensus 132 ~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 132 GLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred CCCCCCEeccCHHHHHHHHHHcCC
Confidence 013588999999999999998853
No 69
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.93 E-value=0.008 Score=54.97 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=76.8
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCCCCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccc------cC---
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLSSNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYST------LA--- 431 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~------~~--- 431 (742)
..+++|.+.. ..+|......-...+.+++++||+|+|..|..++.++||.++|+.++.....+. +.
T Consensus 64 e~~~lV~adP-----p~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~s 138 (193)
T KOG3920|consen 64 ENLELVLADP-----PHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDES 138 (193)
T ss_pred cCcceeecCC-----hhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCccc
Confidence 3466666653 466876554467889999999999999999999999999999998775543322 22
Q ss_pred -CCccccEEEEehhhHHHHHHHHhcCCCCeEEEEece
Q 048043 432 -DPHLLPAVHVSYAAGESIKAYINSTSSPNATIVFKG 467 (742)
Q Consensus 432 -~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 467 (742)
+...+|++++-..+|..++.-+......-+.|..+-
T Consensus 139 q~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 139 QDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred ccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 356899999999999887777776666666665544
No 70
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.70 E-value=0.027 Score=52.29 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCc------------------chhhhhHHHhhcCCeEEEEe
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGG------------------ERTKKGQVVKDAGGIGMILM 420 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~------------------~~~~~~~~~~~~g~~~~i~~ 420 (742)
....|+||.+.... ...|...++. .+++||||++.++.| .+..|..++..+||.|+|++
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 34678888875432 2457777777 799999999999877 46679999999999999999
Q ss_pred ccCC
Q 048043 421 NDKL 424 (742)
Q Consensus 421 ~~~~ 424 (742)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9865
No 71
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.57 E-value=0.039 Score=59.78 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=64.6
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCC------CccccCCCccccEEEEehhhHHHHHHHHhcCCCC
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLN------GYSTLADPHLLPAVHVSYAAGESIKAYINSTSSP 459 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 459 (742)
..++++++++.||.|.|.+|.+.++++||.+.+++|+..+ ++........||.++|..++++.+..-..++.+.
T Consensus 92 ~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V 171 (541)
T KOG2442|consen 92 SKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNV 171 (541)
T ss_pred ccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeE
Confidence 6789999999999999999999999999999999998543 2222334568999999999999999877666665
Q ss_pred eEEEE
Q 048043 460 NATIV 464 (742)
Q Consensus 460 ~~~i~ 464 (742)
++.+.
T Consensus 172 ~~~lY 176 (541)
T KOG2442|consen 172 ELALY 176 (541)
T ss_pred EEEEE
Confidence 55554
No 72
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.46 E-value=0.036 Score=51.16 Aligned_cols=63 Identities=24% Similarity=0.441 Sum_probs=49.4
Q ss_pred CceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcc------------hhhhhHHHhhcCCeEEEEeccCCC
Q 048043 361 KQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGE------------RTKKGQVVKDAGGIGMILMNDKLN 425 (742)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~------------~~~~~~~~~~~g~~~~i~~~~~~~ 425 (742)
..-++||.+.... ...|...++. .+++|||||+.++.|. +.+|..++...||.++|++++...
T Consensus 22 v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3567777775432 2457777776 8999999999998873 568999999999999999988543
No 73
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.82 E-value=0.073 Score=50.06 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=47.3
Q ss_pred ceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCC------------------cchhhhhHHHhhcCCeEEEEecc
Q 048043 362 QFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGG------------------GERTKKGQVVKDAGGIGMILMND 422 (742)
Q Consensus 362 ~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~------------------~~~~~~~~~~~~~g~~~~i~~~~ 422 (742)
.-++||.+.... ...|....+. .+++|||||+.++. |.+..|..++...|++++|++++
T Consensus 21 tg~lVfvGyGi~--~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d 98 (151)
T cd04822 21 TAPVVFAGYGIT--APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNG 98 (151)
T ss_pred eEeEEEecCCcC--ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeC
Confidence 467777765432 3457666665 78999999998764 45678999999999999999998
Q ss_pred CCC
Q 048043 423 KLN 425 (742)
Q Consensus 423 ~~~ 425 (742)
...
T Consensus 99 ~~~ 101 (151)
T cd04822 99 PNS 101 (151)
T ss_pred Ccc
Confidence 644
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.50 E-value=0.22 Score=41.32 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=38.0
Q ss_pred CccEEEEEEEEeeCCCC-ceEEEEEECCCCcEEEEEcCeeE-ecCCCcEEEEEEEEEEccC
Q 048043 656 STSQTYNRTVTNVGQAE-SSYTHKIVAPEGVTVTVEPENIS-FTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~-~~y~~~~~~p~~~~v~v~p~~~~-~~~~g~~~~~~v~~~~~~~ 714 (742)
+...+++.+|+|.|..+ ...+++...|.|-.+...|..+. +.+ |++++++++|+++..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~p-G~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPP-GESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-T-TSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCC-CCEEEEEEEEECCCC
Confidence 34688999999999765 45888888999988777887764 555 999999999999854
No 75
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.21 E-value=0.81 Score=41.23 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=51.1
Q ss_pred cEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCC-CceEEEEEEEE--cCceEEE
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTS-ALFAQGYLSWV--STKHTVR 734 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~-~~~~~G~i~~~--~~~~~v~ 734 (742)
...+++.|+|.+..+.+|++++..++++.+......+++.+ |++.++.|.+..+.... ..-..=.+.+. +++..++
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~~~~~~ 110 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDALKSGSTPITFTVTDDDGGEIIT 110 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEEEE
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHHccCCCeeEEEEEEECCCCEEEE
Confidence 67889999999999999999999988999866558899988 99999999999985421 11112222332 3455555
Q ss_pred EeEEEE
Q 048043 735 SPIAVR 740 (742)
Q Consensus 735 ~p~~v~ 740 (742)
....+.
T Consensus 111 ~~s~F~ 116 (118)
T PF11614_consen 111 YKSTFI 116 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554443
No 76
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=92.88 E-value=0.14 Score=47.63 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL 424 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~ 424 (742)
-+++|||++++.|...+..|..+++..|++|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 468999999999999999999999999999999998753
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.39 Score=51.02 Aligned_cols=78 Identities=23% Similarity=0.202 Sum_probs=61.8
Q ss_pred CCcCCCCCC----CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCCCCccccC----CCccccEEEEehhhHHH
Q 048043 377 AQCSPGSLS----SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKLNGYSTLA----DPHLLPAVHVSYAAGES 448 (742)
Q Consensus 377 ~~c~~~~~~----~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 448 (742)
++|.+.... ......++++.||+|.|.+|..+++.+|..++|++|+......... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 567665441 5677889999999999999999999999999999998765543322 34568889999999998
Q ss_pred HHHHHh
Q 048043 449 IKAYIN 454 (742)
Q Consensus 449 l~~~~~ 454 (742)
|..|..
T Consensus 143 l~~~~~ 148 (348)
T KOG4628|consen 143 LSSYAG 148 (348)
T ss_pred HHHhhc
Confidence 888753
No 78
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.02 E-value=1.4 Score=39.88 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=54.3
Q ss_pred ceeeeeC-CccEEEEEEEEeeCCCCceEEEEEEC----CCC--------------------cEEEEEcCeeEecCCCcEE
Q 048043 649 SFSVILG-STSQTYNRTVTNVGQAESSYTHKIVA----PEG--------------------VTVTVEPENISFTKKNQKA 703 (742)
Q Consensus 649 s~~~~~~-~~~~~~~~tv~n~~~~~~~y~~~~~~----p~~--------------------~~v~v~p~~~~~~~~g~~~ 703 (742)
.|.+... +..++++++|+|.++++.+|.+.+.. ..| --+++ |..+++++ ++++
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~-~~sk 95 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPP-NESK 95 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECC-CCEE
Confidence 3444433 45899999999999999999987651 111 11222 55588888 9999
Q ss_pred EEEEEEEEccCCCCceEEEEEEEE
Q 048043 704 IYSITFTRSQKTSALFAQGYLSWV 727 (742)
Q Consensus 704 ~~~v~~~~~~~~~~~~~~G~i~~~ 727 (742)
+++++++.+...-.+.+-|.|.+.
T Consensus 96 ~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 96 TVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999998764436777777664
No 79
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=91.85 E-value=3.4 Score=37.32 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=47.5
Q ss_pred CCccEEEEEEEEeeCCCCceEEEEEEC---CC----CcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEE
Q 048043 655 GSTSQTYNRTVTNVGQAESSYTHKIVA---PE----GVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWV 727 (742)
Q Consensus 655 ~~~~~~~~~tv~n~~~~~~~y~~~~~~---p~----~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~ 727 (742)
.....+.+++|+|.++.+..+.+.+.. .. .-.+.++|..+++.+ |+++++.| +.....+...-..=+|.+.
T Consensus 12 ~~~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 12 NESQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp ETTSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred eCCCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 334567789999999877777777653 11 125779999999999 99999999 7744432222333345443
No 80
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=91.05 E-value=0.29 Score=49.12 Aligned_cols=39 Identities=31% Similarity=0.500 Sum_probs=36.1
Q ss_pred CCccceEEEeecCCcchhhhhHHHhhcCCeEEEEeccCC
Q 048043 386 SNIRGKLVLCERGGGERTKKGQVVKDAGGIGMILMNDKL 424 (742)
Q Consensus 386 ~~~~g~iv~~~~g~~~~~~~~~~~~~~g~~~~i~~~~~~ 424 (742)
.+++|||+|++++.+.+.+|..+++.+||+|+|++++..
T Consensus 68 vdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 68 IDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 579999999999999889999999999999999998854
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=88.00 E-value=4.7 Score=44.30 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=58.7
Q ss_pred CccEEEEEEEEeeCCCCce-EEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEc
Q 048043 656 STSQTYNRTVTNVGQAESS-YTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVS 728 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~-y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~ 728 (742)
+..++....+.|.|+.+.| -++++..|.|-++.|.|.++-.-++|++.++++|++++.....+-|+=.|.-++
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 4478999999999987655 678999999999999998765555699999999999996544366776776653
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=0.46 Score=55.69 Aligned_cols=24 Identities=38% Similarity=0.808 Sum_probs=22.5
Q ss_pred CCCCCccEEEEEcccCCCCCCCCC
Q 048043 136 SNLGKGVIIGVMDTGITPGHPSFS 159 (742)
Q Consensus 136 ~~~G~gV~VaVIDtGid~~Hp~f~ 159 (742)
.|.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 589999999999999999999887
No 83
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=85.43 E-value=3.9 Score=38.87 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=42.0
Q ss_pred CCceeEEecCCCCCCCCCCcCCCCCC-CCccceEEEeecCCcc-------------------hhhhhHHHhhcCCeEEEE
Q 048043 360 SKQFPLIYPGANGNVSSAQCSPGSLS-SNIRGKLVLCERGGGE-------------------RTKKGQVVKDAGGIGMIL 419 (742)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~g~iv~~~~g~~~-------------------~~~~~~~~~~~g~~~~i~ 419 (742)
...-++||.+....... -...++. .|++||||++.++... ...|...+...||.|+|+
T Consensus 21 ~~~~elVFvGyGi~ape--~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 21 LKDSPLVFVGYGIVAPE--YGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred cccCCEEEeccCccCcc--cCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 34567777775533211 1112334 7899999999876542 224899999999999999
Q ss_pred eccC
Q 048043 420 MNDK 423 (742)
Q Consensus 420 ~~~~ 423 (742)
+.+.
T Consensus 99 v~~~ 102 (157)
T cd04821 99 VHET 102 (157)
T ss_pred EeCC
Confidence 9764
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=80.36 E-value=9.3 Score=33.45 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=41.5
Q ss_pred cEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEcc
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQ 713 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~ 713 (742)
..+.+++|+|.++...-|++....|... .|.|..-.+.+ |+++++.|++.+..
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~p-~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIEP-GESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE-T-TEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEECC-CCEEEEEEEEEecc
Confidence 5788899999999999999998888765 46799988988 99999999999853
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=78.01 E-value=8.4 Score=42.98 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=48.5
Q ss_pred cEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEcc
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQ 713 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~ 713 (742)
...+++.+.|.++.+.+|++++...++.++...++.+++++ |++.++.|.+..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~-g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKA-GEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECC-CCEEEEEEEEEech
Confidence 67788999999999999999999988988877645889988 99999999998874
No 86
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=75.74 E-value=25 Score=32.56 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=50.8
Q ss_pred cEEEEEEEEeeCCCC-ceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEE
Q 048043 658 SQTYNRTVTNVGQAE-SSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWV 727 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~-~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~ 727 (742)
...+.+-+-|..+.. ..-+++...-.+.++--.|..+++.| ++.++++.+|....... ++.||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P-~~~~~i~~~iKVsStet-GvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAP-HGFARIKATIKVSSTET-GVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCC-CcEEEEEEEEEEEeccC-CEEEEEEEEe
Confidence 455666677755432 22344444456788888899999999 99999999999888766 8999999986
No 87
>COG1470 Predicted membrane protein [Function unknown]
Probab=71.79 E-value=55 Score=36.34 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=51.6
Q ss_pred cEEEEEEEEeeCCCCceEEEEEE-CCCCcEEEEEc-----CeeEecCCCcEEEEEEEEEEccC-CCCceEEEEEEEEc
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIV-APEGVTVTVEP-----ENISFTKKNQKAIYSITFTRSQK-TSALFAQGYLSWVS 728 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~-~p~~~~v~v~p-----~~~~~~~~g~~~~~~v~~~~~~~-~~~~~~~G~i~~~~ 728 (742)
+..+++++.|.|..+.+|.++.. .|++-...++- +++.+++ ||+++++|.+.++.. .. +.|.=.|+-++
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~na~p-G~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSLNATP-GTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCCCCCC-CceeEEEEEec
Confidence 67899999999999999999998 78876655543 3466777 999999999998854 33 34444454444
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=61.82 E-value=22 Score=29.43 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=30.4
Q ss_pred EEEEEcCeeEecCCCcEEEEEEEEEEccCCCCceEEEEEEEEcCc
Q 048043 686 TVTVEPENISFTKKNQKAIYSITFTRSQKTSALFAQGYLSWVSTK 730 (742)
Q Consensus 686 ~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~G~i~~~~~~ 730 (742)
.+++.|..+++.. |+++.|++++++.... . ...+.|++..
T Consensus 4 ~i~i~p~~~~l~~-G~~~~l~a~~~~~~~~---~-~~~v~w~Ssn 43 (81)
T smart00635 4 SVTVTPTTASVKK-GLTLQLTATVTPSSAK---V-TGKVTWTSSN 43 (81)
T ss_pred EEEEeCCeeEEeC-CCeEEEEEEEECCCCC---c-cceEEEEECC
Confidence 5788999999987 9999999997654432 2 6678887543
No 89
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=61.54 E-value=49 Score=28.91 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=38.0
Q ss_pred CccEEEEEEEEeeCCCC-ceEEE-----EEECCCCc---EEEEEcCeeEecCCCcEEEEEEEEEEccC
Q 048043 656 STSQTYNRTVTNVGQAE-SSYTH-----KIVAPEGV---TVTVEPENISFTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~-~~y~~-----~~~~p~~~---~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 714 (742)
+.+.++.++++|..+.. .+-++ .+.. .|+ ........+++.| |++.+++++|.+.+-
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l~p-~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTLKP-GETKSVEVTITPSQY 79 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE-T-TEEEEEEEEE-HHSH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceeeCC-CCEEEEEEEEEceeE
Confidence 44789999999998876 55332 2333 455 3566677788888 999999999987653
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=61.19 E-value=29 Score=25.27 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=26.5
Q ss_pred EEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEE
Q 048043 663 RTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITF 709 (742)
Q Consensus 663 ~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~ 709 (742)
++++|.|+.+....--...-.=..+ +...-.+.| ||+..++|+|
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~--~~~~~~i~P-Ges~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTA--EYSKKPIAP-GESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEe--eCCcceECC-CCEEEEEEEC
Confidence 6889999876554322222222333 333345667 9999998875
No 91
>PRK13203 ureB urease subunit beta; Reviewed
Probab=54.24 E-value=38 Score=29.37 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=14.6
Q ss_pred eCCccEEEEEEEEeeCCCCc
Q 048043 654 LGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 654 ~~~~~~~~~~tv~n~~~~~~ 673 (742)
...+..+++++|+|.|+.+.
T Consensus 15 ln~gr~~~~l~V~NtGDRPI 34 (102)
T PRK13203 15 LNAGRETVTLTVANTGDRPI 34 (102)
T ss_pred eCCCCCEEEEEEEeCCCCce
Confidence 33445778899999998753
No 92
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=53.58 E-value=38 Score=29.33 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=14.6
Q ss_pred eCCccEEEEEEEEeeCCCCc
Q 048043 654 LGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 654 ~~~~~~~~~~tv~n~~~~~~ 673 (742)
...+..+.+++|+|.|+.+.
T Consensus 15 lN~gr~~~~l~V~NtGDRpI 34 (101)
T cd00407 15 LNAGREAVTLKVKNTGDRPI 34 (101)
T ss_pred eCCCCCEEEEEEEeCCCcce
Confidence 33446778899999998753
No 93
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=51.83 E-value=45 Score=28.87 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.1
Q ss_pred CCccEEEEEEEEeeCCCCc
Q 048043 655 GSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 655 ~~~~~~~~~tv~n~~~~~~ 673 (742)
..+..+.+++|+|.|+.+.
T Consensus 16 n~gr~~~~l~V~NtGDRPI 34 (101)
T TIGR00192 16 NEGRKTVSVKVKNTGDRPI 34 (101)
T ss_pred CCCCcEEEEEEEeCCCcce
Confidence 3345778899999998753
No 94
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.77 E-value=69 Score=27.05 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=33.3
Q ss_pred CccEEEEEEEEeeCCCC-ceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEEEEc
Q 048043 656 STSQTYNRTVTNVGQAE-SSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITFTRS 712 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~-~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 712 (742)
+...+++.+|+|.|... ..+.+.+... |..+ -+...-.|.+ |+++++++++..+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~-~~~~i~~L~~-g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV-STVTIPSLAP-GESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE-EEEEESEB-T-TEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee-ccEEECCcCC-CcEEEEEEEEEeC
Confidence 45789999999999874 4466665432 3232 1111125667 9999999998887
No 95
>PRK13202 ureB urease subunit beta; Reviewed
Probab=46.07 E-value=73 Score=27.72 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.4
Q ss_pred EEEEEEEEeeCCCCc
Q 048043 659 QTYNRTVTNVGQAES 673 (742)
Q Consensus 659 ~~~~~tv~n~~~~~~ 673 (742)
.+++++|+|.|+.+.
T Consensus 21 ~~~~l~V~NtGDRPI 35 (104)
T PRK13202 21 SRLQMRIINAGDRPV 35 (104)
T ss_pred ceEEEEEEeCCCCce
Confidence 678899999998753
No 96
>PRK13201 ureB urease subunit beta; Reviewed
Probab=44.24 E-value=62 Score=29.44 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=14.2
Q ss_pred CCccEEEEEEEEeeCCCCc
Q 048043 655 GSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 655 ~~~~~~~~~tv~n~~~~~~ 673 (742)
..+..+++++|+|.|+.+.
T Consensus 16 N~gr~~~~l~V~NtGDRPI 34 (136)
T PRK13201 16 NNHHPETVIEVENTGDRPI 34 (136)
T ss_pred CCCCCEEEEEEEeCCCcce
Confidence 3345678899999998753
No 97
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=44.04 E-value=1e+02 Score=25.89 Aligned_cols=53 Identities=15% Similarity=0.093 Sum_probs=34.0
Q ss_pred eeeCCccEEEEEEEEeeCCCCceEEEEEECCCCcEEEEEcCeeEecCCCcEEEEEEEE
Q 048043 652 VILGSTSQTYNRTVTNVGQAESSYTHKIVAPEGVTVTVEPENISFTKKNQKAIYSITF 709 (742)
Q Consensus 652 ~~~~~~~~~~~~tv~n~~~~~~~y~~~~~~p~~~~v~v~p~~~~~~~~g~~~~~~v~~ 709 (742)
+........+.++++|.|....++++.-..-. .-.|.++++.+ |+++++...+
T Consensus 13 ~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~a-g~~~~~~w~l 65 (89)
T PF05506_consen 13 ARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAA-GQTVSLTWPL 65 (89)
T ss_pred EEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECC-CCEEEEEEee
Confidence 33333345888999999988887777652211 11355667777 8887766655
No 98
>PRK13205 ureB urease subunit beta; Reviewed
Probab=43.79 E-value=61 Score=30.13 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=14.9
Q ss_pred eCCccEEEEEEEEeeCCCCc
Q 048043 654 LGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 654 ~~~~~~~~~~tv~n~~~~~~ 673 (742)
...+..+++++|+|.|+.+.
T Consensus 15 lN~GR~~i~L~V~NtGDRPI 34 (162)
T PRK13205 15 GNVGREAKTIEIINTGDRPV 34 (162)
T ss_pred eCCCCcEEEEEEEeCCCCce
Confidence 33446778899999998754
No 99
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=43.79 E-value=48 Score=28.64 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=13.5
Q ss_pred eCCccEEEEEEEEeeCCCCc
Q 048043 654 LGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 654 ~~~~~~~~~~tv~n~~~~~~ 673 (742)
...+..+.+++|+|.|+.+.
T Consensus 14 lN~gr~~~~l~V~N~GDRPI 33 (100)
T PF00699_consen 14 LNAGRERITLEVTNTGDRPI 33 (100)
T ss_dssp TTTTSEEEEEEEEE-SSS-E
T ss_pred ecCCCcEEEEEEEeCCCcce
Confidence 33446788899999998753
No 100
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=43.50 E-value=61 Score=39.32 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=35.0
Q ss_pred ccEEEEEEEEeeCCCCceEEEEE--ECCCCcEEE------EEcCeeEecCCCcEEEEEEEEEEcc
Q 048043 657 TSQTYNRTVTNVGQAESSYTHKI--VAPEGVTVT------VEPENISFTKKNQKAIYSITFTRSQ 713 (742)
Q Consensus 657 ~~~~~~~tv~n~~~~~~~y~~~~--~~p~~~~v~------v~p~~~~~~~~g~~~~~~v~~~~~~ 713 (742)
+..+++++|+|+|+.+..-.+.+ ..|.+. +. +--.++.+.+ ||++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~~P~k~L~gF~Kv~L~p-Ges~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MSRPVKELKGFEKIMLKP-GETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CCCHHHhccCceeEeECC-CCeEEEEEeecHHH
Confidence 36889999999999654444433 334321 11 1113345666 99999999998764
No 101
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=41.91 E-value=1.5e+02 Score=30.14 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=38.1
Q ss_pred cEEEEEEEEeeCCCCceEEEEEE---CC---C----------CcEEEEEcCeeEecCCCcEEEEEEEEEEc
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIV---AP---E----------GVTVTVEPENISFTKKNQKAIYSITFTRS 712 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~---~p---~----------~~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 712 (742)
.....++|.|.|+.+.-+++.+. .| . .-.+-++|..|++.+ |+++.++|.-..+
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~p-g~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPA-GTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECC-CCeEEEEEEEcCC
Confidence 45567888998888777776643 22 1 125678999999988 9998887665443
No 102
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=41.25 E-value=50 Score=27.60 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=13.0
Q ss_pred eeEecCCCcEEEEEEEEEEccC
Q 048043 693 NISFTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 693 ~~~~~~~g~~~~~~v~~~~~~~ 714 (742)
..++.| ||+++|+.++.....
T Consensus 53 ~~~l~p-Ge~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 53 EETLEP-GESLTYEETWDLKDL 73 (82)
T ss_dssp EEEE-T-T-EEEEEEEESS---
T ss_pred EEEECC-CCEEEEEEEECCCCC
Confidence 456777 999999988876653
No 103
>PRK13204 ureB urease subunit beta; Reviewed
Probab=39.61 E-value=76 Score=29.60 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=15.4
Q ss_pred eeCCccEEEEEEEEeeCCCCc
Q 048043 653 ILGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~ 673 (742)
....+..+++++|+|.|+.+.
T Consensus 37 ~lN~gr~~~~l~V~NtGDRPI 57 (159)
T PRK13204 37 EINQGRPRTTLTVRNTGDRPI 57 (159)
T ss_pred EeCCCCcEEEEEEEeCCCCce
Confidence 344456778899999998753
No 104
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=38.82 E-value=1.5e+02 Score=30.16 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=39.5
Q ss_pred eeCCccEEEEEEEEeeCCCCceEEEEE--ECC---CCcEEEEEcCeeEecCCCcEEEEEEEEEE
Q 048043 653 ILGSTSQTYNRTVTNVGQAESSYTHKI--VAP---EGVTVTVEPENISFTKKNQKAIYSITFTR 711 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~~y~~~~--~~p---~~~~v~v~p~~~~~~~~g~~~~~~v~~~~ 711 (742)
.+.++....+++|+|.++. .|.+.. ... ....+-|+|..+++.+ |+++.++|....
T Consensus 34 i~~~~~~~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~fivtPPl~rl~p-g~~q~vRii~~~ 94 (230)
T PRK09918 34 IVEESDGEGSINVKNTDSN--PILLYTTLVDLPEDKSKLLLVTPPVARVEP-GQSQQVRFILKS 94 (230)
T ss_pred EEECCCCeEEEEEEcCCCC--cEEEEEEEecCCCCCCCCEEEcCCeEEECC-CCceEEEEEECC
Confidence 3444567888999998864 455543 221 1245788999999999 999998887653
No 105
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=37.90 E-value=1e+02 Score=26.62 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=14.3
Q ss_pred eeCCccEEEEEEEEeeCCCCc
Q 048043 653 ILGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~ 673 (742)
....+..+.+++|.|.|+.+.
T Consensus 14 elN~gr~~~~i~V~NtGDRPI 34 (106)
T COG0832 14 ELNAGRPTVTIEVANTGDRPI 34 (106)
T ss_pred EEeCCCcceEEEEeecCCCce
Confidence 333345677788999998753
No 106
>PLN03080 Probable beta-xylosidase; Provisional
Probab=37.75 E-value=69 Score=38.86 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=34.0
Q ss_pred cEEEEEEEEeeCCCCceEEEEE--ECCCC-----cEEEEEcCeeEecCCCcEEEEEEEEEE
Q 048043 658 SQTYNRTVTNVGQAESSYTHKI--VAPEG-----VTVTVEPENISFTKKNQKAIYSITFTR 711 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~--~~p~~-----~~v~v~p~~~~~~~~g~~~~~~v~~~~ 711 (742)
..+++++|||+|+....-.+.+ ..|.. .+.-+--+++.+.+ ||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~-Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTAS-GRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCC-CCEEEEEEEeCc
Confidence 4789999999999765555443 33321 11111233455666 999999999976
No 107
>PRK13198 ureB urease subunit beta; Reviewed
Probab=36.45 E-value=92 Score=29.06 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=15.4
Q ss_pred eeCCccEEEEEEEEeeCCCCc
Q 048043 653 ILGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~ 673 (742)
....+..+.+++|+|.|+.+.
T Consensus 42 ~lN~gr~~~~l~V~NtGDRPI 62 (158)
T PRK13198 42 TFNENKPVTKVKVRNTGDRPI 62 (158)
T ss_pred EeCCCCcEEEEEEEeCCCCce
Confidence 344446788899999998753
No 108
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=32.84 E-value=20 Score=16.10 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.1
Q ss_pred cccCCC
Q 048043 480 SFSSRG 485 (742)
Q Consensus 480 ~fSs~G 485 (742)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 109
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=32.73 E-value=41 Score=23.97 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHhhCCCCCHHHHHHHHHcccc
Q 048043 540 AALLKSAHPDWSPAAIKSAIMTTAD 564 (742)
Q Consensus 540 aALl~q~~p~~s~~~ik~~L~~TA~ 564 (742)
+--|++.+|++++..|+..|...-.
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 3457889999999999999976543
No 110
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=31.36 E-value=37 Score=22.92 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 048043 531 MSCPHLSGVAALL 543 (742)
Q Consensus 531 mAaP~VAG~aALl 543 (742)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 4899999998754
No 111
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=31.17 E-value=1.8e+02 Score=30.84 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=14.6
Q ss_pred cEEEEEEEEeeCCCCceEEEEEECC
Q 048043 658 SQTYNRTVTNVGQAESSYTHKIVAP 682 (742)
Q Consensus 658 ~~~~~~tv~n~~~~~~~y~~~~~~p 682 (742)
...++++|+|..+.+.+-.+....|
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeCCC
Confidence 4556677777766655544444444
No 112
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=29.62 E-value=2.1e+02 Score=25.22 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=34.7
Q ss_pred eeec-CcceEEEEEEeccCCCCHHHHHHHHHHhhhCCCcEEEEccCCC
Q 048043 233 VGIA-PLAHLAIYKVCDFDGCSESRVYAAMDTAIDDGVDVLSLSLGAA 279 (742)
Q Consensus 233 ~GvA-P~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~~VIn~SlG~~ 279 (742)
.+.. ++++|+. ++.+.|+....++.-+++..+.|+++|-+|--..
T Consensus 31 ~~y~~~~~elvg--f~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 31 ARYDDEDVELVG--FFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred ccCCCCCeEEEE--EeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 3444 4677776 4556678888899999999999999999987754
No 113
>PRK15019 CsdA-binding activator; Provisional
Probab=29.04 E-value=51 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=27.8
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 048043 524 NMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKS 557 (742)
Q Consensus 524 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~ 557 (742)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3344555 68999999999999999999999876
No 114
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=28.78 E-value=1.2e+02 Score=29.80 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=15.5
Q ss_pred eeCCccEEEEEEEEeeCCCCc
Q 048043 653 ILGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~ 673 (742)
....+..+.+++|+|.|+.+.
T Consensus 123 ~lN~gr~~~~l~V~NtGDRPI 143 (208)
T PRK13192 123 ELNAGRPAVTLDVTNTGDRPI 143 (208)
T ss_pred eeCCCCCEEEEEEEeCCCCce
Confidence 334456788899999999753
No 115
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=27.78 E-value=56 Score=30.35 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=28.4
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 048043 524 NMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSA 558 (742)
Q Consensus 524 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~ 558 (742)
-.+.|.| =|+.|-|++||+++.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998743
No 116
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=25.28 E-value=2.3e+02 Score=28.95 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=40.5
Q ss_pred eeCCccEEEEEEEEeeCCCCceEEEEEEC--------CC----CcEEEEEcCeeEecCCCcEEEEEEEEEE
Q 048043 653 ILGSTSQTYNRTVTNVGQAESSYTHKIVA--------PE----GVTVTVEPENISFTKKNQKAIYSITFTR 711 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~~y~~~~~~--------p~----~~~v~v~p~~~~~~~~g~~~~~~v~~~~ 711 (742)
-+.++....+++|.|.++. .|-+.... ++ ...+.|+|..+++.+ ++.+.++|....
T Consensus 36 Iy~~~~~~~sv~l~N~~~~--p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p-~~~q~lRIi~~~ 103 (236)
T PRK11385 36 IFPADRESISILLTNTSQE--SWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKP-GTTGTLRLLRTE 103 (236)
T ss_pred EEcCCCceEEEEEEeCCCC--cEEEEEEcccCccccCcccccccCCEEEcCCeEEECC-CCceEEEEEECC
Confidence 3445578888999998765 47665521 11 124778999999999 999999988764
No 117
>PRK13986 urease subunit alpha; Provisional
Probab=25.23 E-value=1.5e+02 Score=29.53 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=16.1
Q ss_pred eeeCCccEEEEEEEEeeCCCCc
Q 048043 652 VILGSTSQTYNRTVTNVGQAES 673 (742)
Q Consensus 652 ~~~~~~~~~~~~tv~n~~~~~~ 673 (742)
+....+..+.+++|+|.|+.+.
T Consensus 118 I~lN~gr~~~~l~V~NtGDRPI 139 (225)
T PRK13986 118 ITINAGKKAVSVKVKNVGDRPV 139 (225)
T ss_pred eecCCCCcEEEEEEEeCCCCce
Confidence 3444456788899999999753
No 118
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.09 E-value=66 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=27.8
Q ss_pred eeeccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 048043 524 NMVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKS 557 (742)
Q Consensus 524 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~ 557 (742)
-.+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 68999999999999999999999875
No 119
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=24.94 E-value=1.1e+02 Score=33.43 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=41.5
Q ss_pred CCccccccCCCCCCCCCCCcccceEecCCcEEeccCCCccCCCCCcccceeeccccchhHHHHHHHHHH
Q 048043 475 TPELASFSSRGPSIASPGILKPDIIGPGVNILAAWPFSVENKTNTKSTFNMVAGTSMSCPHLSGVAALL 543 (742)
Q Consensus 475 ~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 543 (742)
++-......-||+. -+-||+.+||+...|+.+.+....... .-+=|=.|+|.+|.++|+.
T Consensus 354 AG~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~GRqG~-----~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 354 AGFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFEGRQGS-----PGARTYLASPAMAAAAAVE 413 (423)
T ss_pred cCcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCCccCCC-----CCCeEEecCHHHHHHHHhh
Confidence 44556667788887 356799999999999988754211110 1122556999999999974
No 120
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=24.39 E-value=5.5e+02 Score=26.40 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=40.3
Q ss_pred CccEEEEEEEEeeCCCCceEEEEEE--CC---CCcEEEEEcCeeEecCCCcEEEEEEEEEEccCC
Q 048043 656 STSQTYNRTVTNVGQAESSYTHKIV--AP---EGVTVTVEPENISFTKKNQKAIYSITFTRSQKT 715 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y~~~~~--~p---~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~ 715 (742)
++....+++|.|.++. .|-+..- .. .....-|+|..+++.+ ++.++++|.......+
T Consensus 53 ~~~~~~sl~i~N~~~~--p~LvQsWvd~~~~~~~~pFiVtPPLfRLep-~~~~~lRIi~~~~~LP 114 (246)
T PRK15233 53 EDAPSTSFWIMNEKEY--PILVQTQVYNDDKSSKAPFIVTPPILKVES-NARTRLKVIPTSNLFN 114 (246)
T ss_pred CCCcEEEEEEEcCCCC--cEEEEEEEecCCCCccCCEEECCCeEEECC-CCceEEEEEECCCCCC
Confidence 4467888999996543 4665542 11 1234778999999999 9999999988754443
No 121
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=66 Score=29.96 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=25.2
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHH
Q 048043 526 VAGTSMSCPHLSGVAALLKSAHPDWSPAAIKS 557 (742)
Q Consensus 526 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~ 557 (742)
+.|=| =|++|.|.+|++++.+-..||++|.+
T Consensus 74 F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 74 FFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred Eeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 33444 37899999999999999999998853
No 122
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=24.17 E-value=7e+02 Score=25.26 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=40.7
Q ss_pred eeCCccEEEEEEEEeeCCCCceEEEE--EECCCC---cEEEEEcCeeEecCCCcEEEEEEEEEEccC
Q 048043 653 ILGSTSQTYNRTVTNVGQAESSYTHK--IVAPEG---VTVTVEPENISFTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~~y~~~--~~~p~~---~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 714 (742)
-+..+....+++|+|.++. ..|-+. +...++ ..+.|+|.-+++.+ +++++++|.......
T Consensus 37 Iy~~~~~~~sv~i~N~~~~-~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~-~~~~~lRI~~~~~~l 101 (228)
T PRK15188 37 IYPQGSKQTSLPIINSSAS-NVFLIQSWVANADGSRSTDFIITPPLFVIQP-KKENILRIMYVGPSL 101 (228)
T ss_pred EEcCCCceEEEEEEeCCCC-ccEEEEEEEecCCCCccCCEEEcCCeEEECC-CCceEEEEEECCCCC
Confidence 3445567888999998753 234433 222222 24778999999999 999999988875433
No 123
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=23.90 E-value=6.5e+02 Score=25.49 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=41.0
Q ss_pred eCCccEEEEEEEEeeCCCCceEEEEEEC---CC---CcEEEEEcCeeEecCCCcEEEEEEEEEEccC
Q 048043 654 LGSTSQTYNRTVTNVGQAESSYTHKIVA---PE---GVTVTVEPENISFTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 654 ~~~~~~~~~~tv~n~~~~~~~y~~~~~~---p~---~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 714 (742)
+..+....+++|+|.++. .|-+.... .. ...+-|+|.-+++.+ |+++.++|.......
T Consensus 33 y~~~~~~~si~i~N~~~~--p~LvQswv~~~~~~~~~~pFivtPPlfrl~p-~~~q~lRI~~~~~~L 96 (229)
T PRK15211 33 YDEGRKNISFEVTNQADQ--TYGGQVWIDNTTQGSSTVYMVPAPPFFKVRP-KEKQIIRIMKTDSAL 96 (229)
T ss_pred EcCCCceEEEEEEeCCCC--cEEEEEEEecCCCCCccCCEEEcCCeEEECC-CCceEEEEEECCCCC
Confidence 444567888999998865 47665321 11 134788999999999 999999988765433
No 124
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=23.77 E-value=4.1e+02 Score=26.91 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=40.8
Q ss_pred eCCccEEEEEEEEeeCCCCceEEEEE--ECCC------C--cEEEEEcCeeEecCCCcEEEEEEEEEEccC
Q 048043 654 LGSTSQTYNRTVTNVGQAESSYTHKI--VAPE------G--VTVTVEPENISFTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 654 ~~~~~~~~~~tv~n~~~~~~~y~~~~--~~p~------~--~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 714 (742)
+.++....+++|.|.++. .|-+.. ...+ . ...-|+|..+++.+ ++.++++|.......
T Consensus 29 y~~~~~~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p-~~~~~lRI~~~~~~L 96 (226)
T PRK15218 29 YPAQKKDITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAA-NSGQQLKIKKLANNL 96 (226)
T ss_pred EcCCCcEEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECC-CCceEEEEEECCCCC
Confidence 444567888999998764 466543 2211 1 24778999999999 999999998764433
No 125
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.29 E-value=3.3e+02 Score=27.74 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=43.6
Q ss_pred eCCccEEEEEEEEeeCCCCceEEEEEE--CC---CCcEEEEEcCeeEecCCCcEEEEEEEEEEccC
Q 048043 654 LGSTSQTYNRTVTNVGQAESSYTHKIV--AP---EGVTVTVEPENISFTKKNQKAIYSITFTRSQK 714 (742)
Q Consensus 654 ~~~~~~~~~~tv~n~~~~~~~y~~~~~--~p---~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~ 714 (742)
+..+.+...++|.|.++.+.....-+. .+ ....+.++|..+++.+ |+.+.++|-.+....
T Consensus 38 ~~~~~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p-~~~q~vRi~~~~~~l 102 (235)
T COG3121 38 YPAGDKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEP-GQEQQLRILYTGNKL 102 (235)
T ss_pred EeCCCceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECC-CCccEEEEEecCCCC
Confidence 344567888999996655555554455 22 3466788999999999 999999999888443
No 126
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=23.18 E-value=7e+02 Score=25.17 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=40.9
Q ss_pred eeeCCccEEEEEEEEeeCCCCceEEEEE--ECCC-----CcEEEEEcCeeEecCCCcEEEEEEEEEEc
Q 048043 652 VILGSTSQTYNRTVTNVGQAESSYTHKI--VAPE-----GVTVTVEPENISFTKKNQKAIYSITFTRS 712 (742)
Q Consensus 652 ~~~~~~~~~~~~tv~n~~~~~~~y~~~~--~~p~-----~~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 712 (742)
+-+.++....+++|+|.++. .|-+.. +..+ ...+.|+|..+++.+ |+++.++|.....
T Consensus 28 vI~~~~~~~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p-~~~q~lRI~~~~~ 92 (226)
T PRK15295 28 LVFDGNNDESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDA-GQKNSIRVIRSGA 92 (226)
T ss_pred EEEeCCCceeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECC-CCceEEEEEECCC
Confidence 34445567888999998764 466542 2111 235788999999999 9999999877643
No 127
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=22.93 E-value=5.7e+02 Score=26.20 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=40.5
Q ss_pred eeCCccEEEEEEEEeeCCCCceEEEEE--EC------CCC--cEEEEEcCeeEecCCCcEEEEEEEEEEc
Q 048043 653 ILGSTSQTYNRTVTNVGQAESSYTHKI--VA------PEG--VTVTVEPENISFTKKNQKAIYSITFTRS 712 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~~y~~~~--~~------p~~--~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 712 (742)
-+..+....+++|.|.++. .|-+.. .. |.. ..+-|+|.-+++.+ |+++.++|.....
T Consensus 35 I~~~~~~~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p-~~~q~lRIi~~~~ 101 (246)
T PRK09926 35 IYKSDQKDVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDP-KRGQTIKLMYTAS 101 (246)
T ss_pred EEeCCCceEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECC-CCccEEEEEeCCC
Confidence 3445577888999998865 455543 21 111 24788999999999 9999999887654
No 128
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=22.77 E-value=81 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=26.2
Q ss_pred eeccccchhHHHHHHHHHHHhhCCCCCHHHHHHH
Q 048043 525 MVAGTSMSCPHLSGVAALLKSAHPDWSPAAIKSA 558 (742)
Q Consensus 525 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~ik~~ 558 (742)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998764
No 129
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=22.64 E-value=6.2e+02 Score=25.53 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=39.9
Q ss_pred eeCCccEEEEEEEEeeCCCCceEEEEE--ECC------CCcEEEEEcCeeEecCCCcEEEEEEEEEEc
Q 048043 653 ILGSTSQTYNRTVTNVGQAESSYTHKI--VAP------EGVTVTVEPENISFTKKNQKAIYSITFTRS 712 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~~y~~~~--~~p------~~~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 712 (742)
-+..+....+++|+|.++. .|.+.. +.. ....+-++|..+++.+ |+++.++|.....
T Consensus 32 i~~~~~~~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p-~~~q~lRI~~~~~ 96 (227)
T PRK15299 32 IFHGDAKDASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNG-GQKNVLRIIRTGG 96 (227)
T ss_pred EEeCCCcEEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECC-CCccEEEEEECCC
Confidence 3444567888999997754 565543 111 1234788999999999 9999999876643
No 130
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=22.47 E-value=1.1e+02 Score=21.70 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHccc
Q 048043 539 VAALLKSAHPDWSPAAIKSAIMTTA 563 (742)
Q Consensus 539 ~aALl~q~~p~~s~~~ik~~L~~TA 563 (742)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998644
No 131
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=22.47 E-value=1e+02 Score=23.88 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhhhhhhhhccCCCCCCCCceE
Q 048043 2 LTITIGLIFSLTFSPAFALTSNGSDTDSLETY 33 (742)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 33 (742)
.+++++|||+.+++ +.+.+.+..+...-.|
T Consensus 4 Kl~vialLC~aLva--~vQ~APQYa~GeeP~Y 33 (65)
T PF10731_consen 4 KLIVIALLCVALVA--IVQSAPQYAPGEEPSY 33 (65)
T ss_pred hhhHHHHHHHHHHH--HHhcCcccCCCCCCCc
Confidence 35677777777766 4444455554444444
No 132
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.68 E-value=79 Score=24.20 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=23.6
Q ss_pred cceeeccccchhHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 048043 522 TFNMVAGTSMSCPHLSGVAA------LLKSAHPDWSPAAIKSAIM 560 (742)
Q Consensus 522 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~p~~s~~~ik~~L~ 560 (742)
+--.+.||=+..=.|....+ -+++.||.++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34456677776666555532 3566799999999999884
No 133
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=20.71 E-value=3.7e+02 Score=20.17 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=23.9
Q ss_pred CccEEEEEEEEeeCCCCce-EEEEEECCCCcEEEEEcCeeEe
Q 048043 656 STSQTYNRTVTNVGQAESS-YTHKIVAPEGVTVTVEPENISF 696 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~-y~~~~~~p~~~~v~v~p~~~~~ 696 (742)
+...+++++++|.|....+ ..+.=..|.|+.. .|.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 4478999999999986543 3333345666442 3444443
No 134
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=20.25 E-value=3.7e+02 Score=29.18 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=27.9
Q ss_pred CccEEEEEEEEeeCCCCceE---E---EEEECC----------------CCcEEEEEcCeeEecCCCcEEEEEEEEEE
Q 048043 656 STSQTYNRTVTNVGQAESSY---T---HKIVAP----------------EGVTVTVEPENISFTKKNQKAIYSITFTR 711 (742)
Q Consensus 656 ~~~~~~~~tv~n~~~~~~~y---~---~~~~~p----------------~~~~v~v~p~~~~~~~~g~~~~~~v~~~~ 711 (742)
+.+.+++.+|||.|+++..- . +....| .| ++|+|+.- +.| ||+++++|+.+-
T Consensus 262 gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~p-I~P-GETrtl~V~a~d 335 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSP-IAP-GETRTLTVEAQD 335 (381)
T ss_dssp SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B-T-T-EEEEEEEEE-
T ss_pred CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCC-cCC-CceEEEEEEeeh
Confidence 34788999999999975432 1 111111 13 34455432 445 999999998864
No 135
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=20.23 E-value=4e+02 Score=27.10 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=40.2
Q ss_pred eeCCccEEEEEEEEeeCCCCceEEEEE--EC------CC--CcEEEEEcCeeEecCCCcEEEEEEEEEE
Q 048043 653 ILGSTSQTYNRTVTNVGQAESSYTHKI--VA------PE--GVTVTVEPENISFTKKNQKAIYSITFTR 711 (742)
Q Consensus 653 ~~~~~~~~~~~tv~n~~~~~~~y~~~~--~~------p~--~~~v~v~p~~~~~~~~g~~~~~~v~~~~ 711 (742)
-+..+....+++|+|.++. .|-+.. .. |. ...+.|+|..+++.+ ++.+.++|....
T Consensus 20 I~~~~~~~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~-~~~~~lRI~~~~ 85 (233)
T PRK15246 20 IFASDDVAQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQP-GELRTLRLLLSS 85 (233)
T ss_pred EEcCCCceEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECC-CCceEEEEEECC
Confidence 3444567888999998754 566554 21 11 135788999999999 999999988764
No 136
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=20.11 E-value=3e+02 Score=28.34 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=40.1
Q ss_pred eeeCCccEEEEEEEEeeCCCCceEEEEE--E------CCCC---cEEEEEcCeeEecCCCcEEEEEEEEEE
Q 048043 652 VILGSTSQTYNRTVTNVGQAESSYTHKI--V------APEG---VTVTVEPENISFTKKNQKAIYSITFTR 711 (742)
Q Consensus 652 ~~~~~~~~~~~~tv~n~~~~~~~y~~~~--~------~p~~---~~v~v~p~~~~~~~~g~~~~~~v~~~~ 711 (742)
+.+.++....+++|.|.++. .|.+.. . .|.+ ..+-|+|..|++.+ |+++.++|....
T Consensus 37 viy~~~~~~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p-~~~q~lRI~~~~ 104 (253)
T PRK15249 37 IIYPSTASSVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQP-KAGQVVRVIYNN 104 (253)
T ss_pred EEEeCCCcceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecC-CCceEEEEEEcC
Confidence 34445567788999997764 465543 1 1212 34788999999999 999999988764
Done!