BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048047
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 380 bits (975), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/517 (41%), Positives = 291/517 (56%), Gaps = 62/517 (11%)
Query: 1 AENHENFLKCLSLQ-SDTIS--KVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITP 57
A ENFLKC S + ++ K++YTQ++ IQNL F + T KP I+TP
Sbjct: 1 ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60
Query: 58 FHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTA 117
+ S IQA I CSKK GLQIR RSGGHD EG+S IS VPF++VDL N I ++ ++TA
Sbjct: 61 SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120
Query: 118 WVQSGATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY--------- 168
WV++GAT+G++ Y I EK++N L+FP G CP L+R Y
Sbjct: 121 WVEAGATLGEVYYWINEKNEN-LSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 169 ------------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLEQ 210
DLFWA +WKI+LV VPS T+F+V + +E
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 211 NATM-LLHKWQYIADRVHEDLFISPFLYRAN---------SSMVCLFTSLFLGGVDRLLP 260
+ + L +KWQ IA + +DL + N +++ F+S+F GGVD L+
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299
Query: 261 LMQESFPELGLTKEDCREMSFIESVVYING---FEIREF---------------FKGKAD 302
LM +SFPELG+ K DC+E S+I++ ++ +G F F F K D
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLD 359
Query: 303 YVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLY 362
YV +PIP+ A + + Y+ED G+ V +PYGG M E SES IPFPHRAG +Y L Y
Sbjct: 360 YVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYELWY 418
Query: 363 YADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEA 422
A W+ D +++H N + ++N+ TPYV++NPR AY+NYRDLD+G N + +A
Sbjct: 419 TASWEKQED--NEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQA 476
Query: 423 GVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 459
+WG+KYF NF RLV VKT VDP NFFRNEQSIPP
Sbjct: 477 RIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 323 bits (829), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/499 (36%), Positives = 263/499 (52%), Gaps = 55/499 (11%)
Query: 4 HENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHVSEI 63
+FL CL+ D + +Y +++ ++N+ F + KP +IITP + S I
Sbjct: 10 ERDFLTCLT--KDIPPRQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHI 67
Query: 64 QAAIKCSKKSGLQIRVRSGGHDLEGLSSISDV--PFIIVDLINFSEISVNAEAKTAWVQS 121
QAA+ C ++ G++IRVRSGGHD EGLS S+ PF +VD+ +S++ +A TAWV S
Sbjct: 68 QAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDS 127
Query: 122 GATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY------------- 168
GA +G L Y IA+ S L FP G C LLRKY
Sbjct: 128 GAQLGDLYYGIAKASPK-LGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVV 186
Query: 169 --------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLEQNATM 214
D FWA SW+++L+ VP VTVF V + +++ A
Sbjct: 187 DAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAID 246
Query: 215 LLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKE 274
L+ KWQ +A + +DL I + +M F +L+LG L+ LM FPELG+
Sbjct: 247 LVTKWQTVAPALPDDLMIR-IMAMGQGAM---FEALYLGTCKDLVLLMTARFPELGMNAT 302
Query: 275 DCREMSFIESVVYI-------------NGFEIREFFKGKADYVMEPIPKEAFEGLYDLFY 321
C+EM++IESV YI I+ F K K+DYV+EPIPK +E ++
Sbjct: 303 HCKEMTWIESVPYIPMGPKGTVRDLLNRTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLV 362
Query: 322 KEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNML 381
K G+++ PYGG ++ ES PFP R+G ++ + Y W + A+
Sbjct: 363 KPGA---GVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYW--FGEGAAALPTQWT 417
Query: 382 NKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAG-VWGKKYFKNNFYRLVHV 440
++++MTPYV+KNPR AY+NYRDLD+G N +G+ S +G VWG+KYFK NF RL
Sbjct: 418 RDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLART 477
Query: 441 KTMVDPENFFRNEQSIPPF 459
K +DPE++FRNEQSIPP
Sbjct: 478 KGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 314 bits (805), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 182/501 (36%), Positives = 263/501 (52%), Gaps = 59/501 (11%)
Query: 5 ENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHVSEIQ 64
E+FL CL + +++Y +++ I+N +S+P N KP +IITP VS IQ
Sbjct: 9 EDFLGCLV--KEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQ 66
Query: 65 AAIKCSKKSGLQIRVRSGGHDLEGLSSISDVP--FIIVDLINFSEISVNAEAKTAWVQSG 122
+A+ C ++ ++IRVRSGGHD EGLS S P F +VDL + V+ +A+TAWV SG
Sbjct: 67 SAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSG 126
Query: 123 ATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY-------------- 168
A +G+L Y I K+ LAFP G CP LLRKY
Sbjct: 127 AQLGELYYAI-YKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVD 185
Query: 169 -------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLEQNATML 215
D FWA +W+++L+ VP TVT+F + +T+ + A +
Sbjct: 186 ANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDI 245
Query: 216 LHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKED 275
++KWQ +A ++ DL I ++ F +++LG L PLM FPELG+
Sbjct: 246 INKWQVVAPQLPADLMIRIIAQGPKAT----FEAMYLGTCKTLTPLMSSKFPELGMNPSH 301
Query: 276 CREMSFIESVVYI----------------NGFEIREFFKGKADYVMEPIPKEAFEGLYDL 319
C EMS+I+S+ ++ N F + F + K+DYV +P PK +E + +
Sbjct: 302 CNEMSWIQSIPFVHLGHRDALEDDLLNRQNSF--KPFAEYKSDYVYQPFPKTVWEQILNT 359
Query: 320 FYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKN 379
+ + G+++F PYG +S T ES PFPHR G ++ + Y W A+ +
Sbjct: 360 WLVKP--GAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYW--FAPGAAAAPLS 415
Query: 380 MLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAG-VWGKKYFKNNFYRLV 438
++NYM PYV+KNPR AY NYRD+D+G N + D S +G VWG+KYFK NF RL
Sbjct: 416 WSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLA 475
Query: 439 HVKTMVDPENFFRNEQSIPPF 459
K VDP ++FRNEQSIPP
Sbjct: 476 ITKGKVDPTDYFRNEQSIPPL 496
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 245/504 (48%), Gaps = 50/504 (9%)
Query: 1 AENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHV 60
AE + L CL+ V ++ IQN +F KP II P
Sbjct: 2 AEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSK 61
Query: 61 SEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQ 120
E+ I+C +K IR+RSGGH EGLS SD PFI++DL+N + +S++ E++TAWV+
Sbjct: 62 EELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 121 SGATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY------------ 168
SG+T+G+L Y I E S L F G CP + RKY
Sbjct: 122 SGSTLGELYYAITESSSK-LGFTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAIL 180
Query: 169 ---------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLE-QNA 212
D+FWA +WKI+L+ VP VTVF V + + A
Sbjct: 181 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 240
Query: 213 TMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLL-PLMQESFPELGL 271
T LLHKWQ++A+ + ED +S L A+ V L F G+ + FPELGL
Sbjct: 241 TSLLHKWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 299
Query: 272 TKEDCREMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDL 319
+ED EMS+ ES Y+ G E FK K D EP+P +AF GL +
Sbjct: 300 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 359
Query: 320 FYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKN 379
KE P G + +GG+MS+ S PFPHR+G + Y W + + +
Sbjct: 360 LSKE-PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 416
Query: 380 MLNKLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGDTSVQEAGVWGKKYFKNNFY 435
L K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+
Sbjct: 417 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 476
Query: 436 RLVHVKTMVDPENFFRNEQSIPPF 459
RL+ KT++DP N F + QSIPP
Sbjct: 477 RLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/504 (34%), Positives = 245/504 (48%), Gaps = 50/504 (9%)
Query: 1 AENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHV 60
AE + L CL+ V ++ IQN +F KP II P
Sbjct: 2 AEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSK 61
Query: 61 SEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQ 120
E+ I+C +K IR+RSGGH EGLS SD PFI++DL+N + +S++ E++TAWV+
Sbjct: 62 EELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVE 121
Query: 121 SGATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY------------ 168
SG+T+G+L Y I E S L F G CP + RKY
Sbjct: 122 SGSTLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 180
Query: 169 ---------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLE-QNA 212
D+FWA +WKI+L+ VP VTVF V + + A
Sbjct: 181 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 240
Query: 213 TMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLL-PLMQESFPELGL 271
T LLHKWQ++A+ + ED +S L A+ V L F G+ + FPELGL
Sbjct: 241 TSLLHKWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 299
Query: 272 TKEDCREMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDL 319
+ED EMS+ ES Y+ G E FK K D EP+P +AF GL +
Sbjct: 300 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 359
Query: 320 FYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKN 379
KE P G + +GG+MS+ S PFPHR+G + Y W + + +
Sbjct: 360 LSKE-PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 416
Query: 380 MLNKLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGDTSVQEAGVWGKKYFKNNFY 435
L K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+
Sbjct: 417 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 476
Query: 436 RLVHVKTMVDPENFFRNEQSIPPF 459
RL+ KT++DP N F + QSIPP
Sbjct: 477 RLIRAKTLIDPNNVFNHPQSIPPM 500
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 282 bits (722), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/503 (34%), Positives = 245/503 (48%), Gaps = 50/503 (9%)
Query: 1 AENHENFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHV 60
AE + L CL+ V ++ IQN +F KP II P
Sbjct: 21 AEAGNDLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSK 80
Query: 61 SEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQ 120
E+ I+C +K IR+RSGGH EGLS SD PFI++DL+N + +S++ E++TAWV+
Sbjct: 81 EELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVE 140
Query: 121 SGATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY------------ 168
SG+T+G+L Y I E S L F G CP + RKY
Sbjct: 141 SGSTLGELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAIL 199
Query: 169 ---------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLE-QNA 212
D+FWA +WKI+L+ VP VTVF V + + A
Sbjct: 200 IDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEA 259
Query: 213 TMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLL-PLMQESFPELGL 271
T LLHKWQ++A+ + ED +S L A+ V L F G+ + FPELGL
Sbjct: 260 TSLLHKWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGL 318
Query: 272 TKEDCREMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDL 319
+ED EMS+ ES Y+ G E FK K D EP+P +AF GL +
Sbjct: 319 VEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLER 378
Query: 320 FYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKN 379
KE P G + +GG+MS+ S PFPHR+G + Y W + + +
Sbjct: 379 LSKE-PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLD 435
Query: 380 MLNKLFNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGDTSVQEAGVWGKKYFKNNFY 435
L K++ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+
Sbjct: 436 WLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYE 495
Query: 436 RLVHVKTMVDPENFFRNEQSIPP 458
RL+ KT++DP N F + QSIPP
Sbjct: 496 RLIRAKTLIDPNNVFNHPQSIPP 518
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/498 (34%), Positives = 243/498 (48%), Gaps = 50/498 (10%)
Query: 6 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHVSEIQA 65
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 1 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60
Query: 66 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATV 125
I+C +K IR+RSGGH EGLS SD PFI++DL+N + +S++ E++TAWV+SG+T+
Sbjct: 61 TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120
Query: 126 GQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY----------------- 168
G+L Y I E S L F G CP + RKY
Sbjct: 121 GELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
Query: 169 ----------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLE-QNATMLLH 217
D+FWA +WKI+L+ VP VTVF V + + AT LLH
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLH 239
Query: 218 KWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLL-PLMQESFPELGLTKEDC 276
KWQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 240 KWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 298
Query: 277 REMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDLFYKED 324
EMS+ ES Y+ G E FK K D EP+P +AF GL + KE
Sbjct: 299 LEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE- 357
Query: 325 PRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKL 384
P G + +GG+MS+ S PFPHR+G + Y W + + + L K+
Sbjct: 358 PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKV 415
Query: 385 FNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGDTSVQEAGVWGKKYFKNNFYRLVHV 440
+ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+
Sbjct: 416 YEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRA 475
Query: 441 KTMVDPENFFRNEQSIPP 458
KT++DP N F + QSIPP
Sbjct: 476 KTLIDPNNVFNHPQSIPP 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/498 (33%), Positives = 242/498 (48%), Gaps = 50/498 (10%)
Query: 6 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHVSEIQA 65
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 1 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60
Query: 66 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATV 125
I+C +K IR+RSGGH EGLS SD PFI++DL+N + +S++ E++TAWV+SG+T+
Sbjct: 61 TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120
Query: 126 GQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY----------------- 168
G+L Y I E S L F G P + RKY
Sbjct: 121 GELYYAITESSSK-LGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
Query: 169 ----------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLE-QNATMLLH 217
D+FWA +WKI+L+ VP VTVF V + + AT LLH
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLH 239
Query: 218 KWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLL-PLMQESFPELGLTKEDC 276
KWQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 240 KWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 298
Query: 277 REMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDLFYKED 324
EMS+ ES Y+ G E FK K D EP+P +AF GL + KE
Sbjct: 299 LEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE- 357
Query: 325 PRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKL 384
P G + +GG+MS+ S PFPHR+G + Y W + + + L K+
Sbjct: 358 PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKV 415
Query: 385 FNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGDTSVQEAGVWGKKYFKNNFYRLVHV 440
+ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+
Sbjct: 416 YEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRA 475
Query: 441 KTMVDPENFFRNEQSIPP 458
KT++DP N F + QSIPP
Sbjct: 476 KTLIDPNNVFNHPQSIPP 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/499 (33%), Positives = 242/499 (48%), Gaps = 50/499 (10%)
Query: 6 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHVSEIQA 65
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 4 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 63
Query: 66 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATV 125
I+C +K IR+RSGG EGLS SD PFI++DL+N + +S++ E++TAWV+SG+T+
Sbjct: 64 TIRCIRKGSWTIRLRSGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 123
Query: 126 GQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY----------------- 168
G+L Y I E S L F G CP + RKY
Sbjct: 124 GELYYAITESSSK-LGFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 182
Query: 169 ----------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLE-QNATMLLH 217
D+FWA +WKI+L+ VP VTVF V + + AT LLH
Sbjct: 183 AILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLH 242
Query: 218 KWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLL-PLMQESFPELGLTKEDC 276
KWQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 243 KWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 301
Query: 277 REMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDLFYKED 324
EMS+ ES Y+ G E FK K D EP+P +AF GL + KE
Sbjct: 302 LEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE- 360
Query: 325 PRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKL 384
P G + +GG+MS+ S PFPHR+G + Y W + + + L K+
Sbjct: 361 PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKV 418
Query: 385 FNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGDTSVQEAGVWGKKYFKNNFYRLVHV 440
+ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+
Sbjct: 419 YEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRA 478
Query: 441 KTMVDPENFFRNEQSIPPF 459
KT++DP N F + QSIPP
Sbjct: 479 KTLIDPNNVFNHPQSIPPM 497
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 169/498 (33%), Positives = 242/498 (48%), Gaps = 50/498 (10%)
Query: 6 NFLKCLSLQSDTISKVIYTQNNXXXXXXXXXXIQNLVFSTPTNQKPPFIITPFHVSEIQA 65
+ L CL+ V ++ IQN +F KP II P E+
Sbjct: 1 DLLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSN 60
Query: 66 AIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATV 125
I+C +K IR+RSGGH EGLS SD PFI++DL+N + +S++ E++TAWV+SG+T+
Sbjct: 61 TIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTL 120
Query: 126 GQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY----------------- 168
G+L Y I E S L F G P + RKY
Sbjct: 121 GELYYAITESSSK-LGFTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANG 179
Query: 169 ----------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVTVFAVPRTLE-QNATMLLH 217
D+FWA +WKI+L+ VP VTVF V + + AT LLH
Sbjct: 180 AILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLH 239
Query: 218 KWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGVDRLL-PLMQESFPELGLTKEDC 276
KWQ++A+ + ED +S L A+ V L F G+ + FPELGL +ED
Sbjct: 240 KWQFVAEELEEDFTLS-VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDY 298
Query: 277 REMSFIESVVYINGFEI------------REFFKGKADYVMEPIPKEAFEGLYDLFYKED 324
EMS+ ES Y+ G E FK K D EP+P +AF GL + KE
Sbjct: 299 LEMSWGESFAYLAGLETVSQLNNRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE- 357
Query: 325 PRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKL 384
P G + +GG+MS+ S PFPHR+G + Y W + + + L K+
Sbjct: 358 PN--GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKV 415
Query: 385 FNYMTPYVAKNPRTAYINYRDLDIG----TNNKLGDTSVQEAGVWGKKYFKNNFYRLVHV 440
+ +M P+V+KNPR Y+N+ DLD+G N + + +++ + WG+ YF +N+ RL+
Sbjct: 416 YEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRA 475
Query: 441 KTMVDPENFFRNEQSIPP 458
KT++DP N F + QSIPP
Sbjct: 476 KTLIDPNNVFNHPQSIPP 493
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 16/168 (9%)
Query: 298 KGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNI 357
K KA Y+ + + + +Y+ D YG + YGGK++ + P R I
Sbjct: 365 KTKAGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-I 423
Query: 358 YTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNP------RTAYINYRDLDIGTN 411
+ Y W + +EA +H + KL+ + P AYINY D D
Sbjct: 424 LKVNYITGWANPGNEA--KHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSD---- 477
Query: 412 NKLGDTSVQEAGV-WGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 458
L D + +GV W Y+K N RL VK DP N F + SI P
Sbjct: 478 --LADPGLNTSGVPWHDLYYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE 107
N +P +I ++ A++ + ++G ++ VRSGGH E DV +I+D+ +E
Sbjct: 55 NGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTE 113
Query: 108 ISVNAEAKTAWVQSGATVGQL 128
I+ + ++ G T+ ++
Sbjct: 114 IAYDPSMNAFLIEPGNTLSEV 134
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 98/467 (20%), Positives = 168/467 (35%), Gaps = 77/467 (16%)
Query: 46 PTNQKPPFIITPFH----VSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVD 101
P N + P+I T + IQ+A++C+KK L++ +SGGH + ++V
Sbjct: 28 PFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQ 87
Query: 102 LINFSE-ISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXX------ 154
L + IS N + A V+ GA +G L + +K ++ GTCP
Sbjct: 88 LDRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISH--GTCPGVGISGHFAHGG 145
Query: 155 ----------------------XXXXXXXXXLLRKYDLFWAXXXXXXXXXXXXXSWKIEL 192
DLFW WK+
Sbjct: 146 FGFSSHMHGLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAGSNFGIVAV-WKLAT 204
Query: 193 VDVPSTVTVFAVPRTLE-QNATMLLHKWQYIADRVHEDLFISP----FLYRANSSMVCLF 247
P +T F V TL +N T L + + D +++P F +
Sbjct: 205 FPAPKVLTRFGV--TLNWKNKTSALKGIEAVEDYAR---WVAPREVNFRIGDYGAGNPGI 259
Query: 248 TSLFLGGVDRLLPLMQESFPEL--GLTKEDCREMSFIESVVYINGFEIREF--------F 297
L+ G ++ Q L G +++IESV+ + F+ +F F
Sbjct: 260 EGLYYGTPEQWRAAFQPLLDTLPAGYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVENF 319
Query: 298 KGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFP---YGGKMSETSE---SEIPFP 351
K+ ++ I +A + D ++ + F+ +GGK S+ ++ +E +P
Sbjct: 320 YAKS-LTLKSIKGDAVKNFVDYYFDVSNKVKDRFWFYQLDVHGGKNSQVTKVTNAETAYP 378
Query: 352 HRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTN 411
HR + L+ + D D + L+ N +T + K+ YINY D + +
Sbjct: 379 HR--DKLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKALPKSDWGMYINYADPRMDRD 436
Query: 412 NKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 458
K Y+ N RL +K DP + F Q++ P
Sbjct: 437 YAT------------KVYYGENLARLQKLKAKFDPTDRFYYPQAVRP 471
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 97/247 (39%), Gaps = 26/247 (10%)
Query: 229 DLFISPFLYRANSSMVCLFTSLFLGGVD---RLLPLMQESFPELGLT-KEDCREMSFIES 284
DL+ L R+ S + + T L G D RL + +G+ D R + ++ S
Sbjct: 292 DLYSVLALTRSQSGALAMTTQLDATGPDAEKRLETYLAAVSEGVGVQPHSDTRRLPWLHS 351
Query: 285 VVY--ING-FEIREFFKGKADYVMEPIPKEAFEGLYDLFYKED-PRTYGLLVFFPYGGKM 340
+ I G ++ K KA Y LY D G++ YGGK+
Sbjct: 352 TRWPGIAGDGDMTGRAKIKAAYARRSFDDRQIGTLYTRLTSTDYDNPAGVVALIAYGGKV 411
Query: 341 SETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRHKNMLNKLFNYM------TPYVAK 394
+ R +I ++Y W+D + H + +L+ + P
Sbjct: 412 NAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPV--HVRWIRELYRDVYADTGGVPVPGG 468
Query: 395 NPRTAYINYRDLDIGTNNKLGDTSVQEAGV-WGKKYFKNNFYRLVHVKTMVDPENFFRNE 453
AY+NY D+D L D +GV W + Y+K+ + RL VK DP N FR+
Sbjct: 469 AADGAYVNYPDVD------LADEEWNTSGVPWSELYYKDAYPRLQAVKARWDPRNVFRHA 522
Query: 454 QS--IPP 458
S +PP
Sbjct: 523 LSVRVPP 529
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 60 VSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWV 119
+EI+ + + +SG ++ VRSGGH E + SDV +++D+ S + + E V
Sbjct: 68 AAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RVVMDMSRLSAVGFDEERGAFAV 126
Query: 120 QSGATVGQLNYRIAEKSQNLLAFPVGTCP 148
++GAT+G + Y+ + + P G CP
Sbjct: 127 EAGATLGAV-YKTLFRVWG-VTLPGGACP 153
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/454 (21%), Positives = 166/454 (36%), Gaps = 78/454 (17%)
Query: 49 QKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI 108
Q+P I ++ +++ + +GL+I VRSGGH+ G + ++ I++DL + I
Sbjct: 37 QRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYA--TNDGGIVLDLRLMNSI 94
Query: 109 SVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPXXXXXXXXXXXXXXXLLRKY 168
++ A + G G L + E ++ LA G P L KY
Sbjct: 95 HIDTAGSRARIGGGVISGDL---VKEAAKFGLAAVTGMHPKVGFCGLALNGGVGFLTPKY 151
Query: 169 ----------------------------DLFWAXXXXXXXXXXXXXSWKIELVDVPSTVT 200
+LFWA +++L ++P +
Sbjct: 152 GLASDNILGATLVTATGDVIYCSDDERPELFWA-VRGAGPNFGVVTEVEVQLYELPRKML 210
Query: 201 ---VFAVPRTLEQNA--TMLLHKWQYIADRVHEDLFISPFLYRANSSMVCLFTSLFLGGV 255
+ P E T LL +AD ++ +F+ RA S VC+ LGG+
Sbjct: 211 AGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPSVTVCVG---HLGGL 267
Query: 256 DRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFEIREFFKGKADYVME---PIPK-- 310
D + LG T D + + VV +N E+ F G ++ ++ +P
Sbjct: 268 D-IAERDIARLRGLGRTVSDSIAVRSYDEVVALNA-EVGSFEDGMSNLWIDREIAMPNAR 325
Query: 311 --EAFEGLYDLFYKEDPRTYGLLVF----FPYGGKMSETSESEIPFPHRAGNIYTLLYYA 364
EA G D F E P + G + P+G + P HR + +L A
Sbjct: 326 FAEAIAGNLDKFVSE-PASGGSVKLEIEGMPFG------NPKRTPARHR--DAMGVLALA 376
Query: 365 DWQDATDEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAGV 424
+W A S+++ + +L + +N N+++ V E
Sbjct: 377 EWSGAA-PGSEKYPELARELDAALLRAGVTTSGFGLLN-------NNSEVTAEMVAEV-- 426
Query: 425 WGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 458
Y + RL VK DPEN FR+ +I P
Sbjct: 427 ----YKPEVYSRLAAVKREYDPENRFRHNYNIDP 456
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 298 KGKADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFFPYGGKMSETSESEIPFPHRAGNI 357
K K Y+ +P LY D + +G + + YGGK++ E+ R +I
Sbjct: 362 KSKGAYLRKPWTAAQAATLYRHL-SADSQVWGEVSLYSYGGKVNSVPETATATAQR-DSI 419
Query: 358 YTLLYYADWQD-ATDEASQRH-KNMLNKLFNYMTPYVAKNPRT--AYINYRDLDIGTNNK 413
+ A W D A D+A+ + + ++F + RT +INY D+D
Sbjct: 420 IKVWMSATWMDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVD------ 473
Query: 414 LGDTSVQEAGV-WGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 458
L D +GV W Y+K N+ RL VK DP + FR+ S+ P
Sbjct: 474 LVDERWNTSGVPWYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRP 519
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 39 QNLV---FSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDV 95
Q+LV F+ +P + ++ A+ + +G +I VRSGGH EG D
Sbjct: 41 QDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF---VDD 97
Query: 96 PFI--IVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCP 148
P + ++D+ ++ ++ + V+ GAT+G+ YR + P G CP
Sbjct: 98 PAVRAVIDMSQMRQVFYDSGKRAFAVEPGATLGE-TYRALYLDWG-VTIPAGVCP 150
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 22/190 (11%)
Query: 279 MSFIESVVYINGFEIREFFKG----KADYVMEPIPKEAFEGLYDLFYKEDPRTYGLLVFF 334
MS++ Y++ + + K+ Y E L+ + + P ++F
Sbjct: 320 MSWLTGTRYMSQADCGDVMGARSASKSAYHRAAPTDEQLSVLHRHLHADHPGQASYVMFN 379
Query: 335 PYGGKMSETSESEIPFPHRAGNIYTLLYYADWQDATDEASQRH----KNMLNKLFNYMTP 390
YGG+++ S+ P R ++ +++ WQDA E + H + + + F
Sbjct: 380 SYGGEINRRGPSDAAVPQR-DSVVKSSWFSAWQDA--ELDELHLGWLRGLYEEFFAGTGG 436
Query: 391 YVAKNPRT--AYINYRDLDI--GTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDP 446
RT YINY D D+ N+ G+ W Y+K+N+ RL K DP
Sbjct: 437 VPVTGGRTDGCYINYPDADLLDPARNRSGEP-------WHHLYYKDNYARLRSAKRAWDP 489
Query: 447 ENFFRNEQSI 456
N F + SI
Sbjct: 490 LNTFHHSMSI 499
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGH---DLEGLSSISDVPFIIVDLINFS 106
+P P ++ A+++ + G + RSGGH D G +++DL N
Sbjct: 34 EPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRD----LVLDLHNLH 89
Query: 107 EISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTC 147
I A+ V SGATV Q+ + + A P+G C
Sbjct: 90 AIGPAADGAGVRVGSGATVDQVQKALFRRWN--AALPLGAC 128
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 38 IQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPF 97
+ F+ + P I P +I AA++C +G+QI + GGH +
Sbjct: 30 MDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGH 89
Query: 98 IIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCP 148
++++L +SV+ + A +Q GA +G + ++ L+ GTCP
Sbjct: 90 LMLELDRMYRVSVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTCP 137
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 38 IQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPF 97
+ F+ + P I P +I AA++C +G+QI + GGH +
Sbjct: 30 MDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGH 89
Query: 98 IIVDLINFSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCP 148
++++L +SV+ + A +Q GA +G + ++ L+ GT P
Sbjct: 90 LMLELDRMYRVSVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTAP 137
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 21/91 (23%)
Query: 233 SPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFE 292
+PFLY+ GVD ++ +M+E +PEL L++E F++ +V
Sbjct: 314 NPFLYK---------------GVDLVVDIMKEPYPELELSRE------FVKGIVKGEEKR 352
Query: 293 IREFFKGKADYVMEPIPKEAFEGLYDLFYKE 323
+ K +Y+ E I K EG L KE
Sbjct: 353 FIKTLKAGMEYIQEVIQKALEEGRKTLSGKE 383
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 21/91 (23%)
Query: 233 SPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFE 292
+PFLY+ GVD ++ +M+E +PEL L++E F++ +V
Sbjct: 313 NPFLYK---------------GVDLVVDIMKEPYPELELSRE------FVKGIVKGEEKR 351
Query: 293 IREFFKGKADYVMEPIPKEAFEGLYDLFYKE 323
+ K +Y+ E I K EG L KE
Sbjct: 352 FIKTLKAGMEYIQEVIQKALEEGRKTLSGKE 382
>pdb|1AW5|A Chain A, 5-Aminolevulinate Dehydratase From Saccharomyces
Cerevisiae
Length = 340
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 371 DEASQRHKNMLNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAG--VWGKK 428
D A ++ +N+L +Y+ P VAK R+ + L GT + +G + AG + G +
Sbjct: 58 DSAPNINRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIR 117
Query: 429 YFKNNFYRL 437
+ + F L
Sbjct: 118 FIREKFPEL 126
>pdb|1YLV|A Chain A, Schiff-Base Complex Of Yeast 5-Aminolaevulinic Acid
Dehydratase With Laevulinic Acid
Length = 342
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 381 LNKLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGDTSVQEAG--VWGKKYFKNNFYRL 437
+N+L +Y+ P VAK R+ + L GT + +G + AG + G K+ + F L
Sbjct: 68 VNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREKFPEL 126
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 233 SPFLYRANSSMVCLFTSLFLGGVDRLLPLMQESFPELGLTKEDCREMSFIESVVYINGFE 292
+PFLY+ GVD ++ + +E +PEL L++E F++ +V
Sbjct: 314 NPFLYK---------------GVDLVVDIXKEPYPELELSRE------FVKGIVKGEEKR 352
Query: 293 IREFFKGKADYVMEPIPKEAFEGLYDLFYKE 323
+ K +Y+ E I K EG L KE
Sbjct: 353 FIKTLKAGXEYIQEVIQKALEEGRKTLSGKE 383
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 325 PRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADW 366
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 325 PRTYGLLVFFPYGGKMSETSESEIPFPHRAGNIYTLLYYADW 366
P GL FFPY + + + ++I P AG + A W
Sbjct: 1 PHMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASW 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,869,851
Number of Sequences: 62578
Number of extensions: 508713
Number of successful extensions: 1126
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 32
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)