Query 048047
Match_columns 466
No_of_seqs 214 out of 1853
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.1E-32 4.5E-37 283.6 38.4 159 42-206 56-252 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 3.6E-28 7.9E-33 250.1 32.9 169 43-224 7-205 (438)
3 PLN02805 D-lactate dehydrogena 100.0 5.5E-28 1.2E-32 254.3 20.5 154 49-207 132-319 (555)
4 TIGR01679 bact_FAD_ox FAD-link 100.0 1.1E-26 2.5E-31 238.7 29.7 166 43-224 4-199 (419)
5 TIGR01677 pln_FAD_oxido plant- 100.0 1.1E-26 2.5E-31 243.8 29.6 153 42-198 23-214 (557)
6 COG0277 GlcD FAD/FMN-containin 99.9 2.9E-26 6.2E-31 239.9 24.9 153 48-206 29-217 (459)
7 TIGR01676 GLDHase galactonolac 99.9 1.1E-26 2.3E-31 240.8 20.2 169 42-223 53-251 (541)
8 PRK11230 glycolate oxidase sub 99.9 2.9E-26 6.2E-31 239.9 22.1 157 48-207 53-242 (499)
9 TIGR00387 glcD glycolate oxida 99.9 1.5E-24 3.2E-29 223.3 16.9 149 54-207 1-185 (413)
10 PRK11282 glcE glycolate oxidas 99.9 4.4E-24 9.5E-29 212.6 17.2 141 59-205 3-179 (352)
11 PLN02465 L-galactono-1,4-lacto 99.9 2E-23 4.3E-28 218.2 20.2 170 42-223 88-286 (573)
12 KOG1231 Proteins containing th 99.9 1E-21 2.2E-26 192.8 17.4 147 46-197 59-240 (505)
13 PF01565 FAD_binding_4: FAD bi 99.9 4.8E-22 1E-26 174.0 9.8 115 51-168 1-116 (139)
14 PRK13905 murB UDP-N-acetylenol 99.8 9.2E-20 2E-24 179.3 10.2 144 49-196 29-193 (298)
15 PRK11183 D-lactate dehydrogena 99.8 2.6E-18 5.7E-23 175.9 17.2 166 48-217 36-287 (564)
16 PRK13903 murB UDP-N-acetylenol 99.7 1E-17 2.2E-22 167.2 11.7 146 48-196 30-197 (363)
17 PRK12436 UDP-N-acetylenolpyruv 99.7 2.7E-17 5.8E-22 161.7 10.0 144 48-195 34-197 (305)
18 KOG4730 D-arabinono-1, 4-lacto 99.7 7.8E-16 1.7E-20 151.7 14.7 146 49-201 48-223 (518)
19 PRK14652 UDP-N-acetylenolpyruv 99.7 3.5E-16 7.7E-21 153.5 10.6 138 48-196 33-196 (302)
20 PF08031 BBE: Berberine and be 99.6 5.9E-17 1.3E-21 113.3 2.7 47 399-457 1-47 (47)
21 PRK13906 murB UDP-N-acetylenol 99.6 3E-15 6.4E-20 147.3 10.6 142 49-194 35-196 (307)
22 TIGR00179 murB UDP-N-acetyleno 99.6 3.7E-15 8E-20 145.4 10.7 144 48-194 10-174 (284)
23 KOG1233 Alkyl-dihydroxyacetone 99.5 6.7E-14 1.5E-18 135.1 14.0 157 45-207 155-351 (613)
24 KOG1232 Proteins containing th 99.5 1.8E-14 3.9E-19 138.8 8.7 159 39-200 78-270 (511)
25 PRK14649 UDP-N-acetylenolpyruv 99.5 1.7E-13 3.6E-18 134.3 13.8 144 50-195 20-192 (295)
26 PRK14653 UDP-N-acetylenolpyruv 99.3 1.3E-11 2.8E-16 120.6 10.3 141 50-196 33-194 (297)
27 COG0812 MurB UDP-N-acetylmuram 99.1 7.4E-10 1.6E-14 106.4 11.4 146 48-195 18-183 (291)
28 PRK00046 murB UDP-N-acetylenol 99.0 7.6E-10 1.6E-14 109.6 9.2 142 50-195 20-188 (334)
29 PRK14650 UDP-N-acetylenolpyruv 99.0 1E-09 2.2E-14 107.1 9.9 143 50-196 32-195 (302)
30 PRK14648 UDP-N-acetylenolpyruv 98.8 1.2E-08 2.5E-13 101.2 9.1 112 50-163 29-143 (354)
31 PRK14651 UDP-N-acetylenolpyruv 98.5 7.1E-07 1.5E-11 86.0 9.1 129 53-195 23-170 (273)
32 KOG1262 FAD-binding protein DI 98.1 2.5E-06 5.5E-11 83.5 4.5 98 99-199 105-232 (543)
33 PRK13904 murB UDP-N-acetylenol 98.0 1.4E-05 3.1E-10 76.3 7.7 128 51-196 19-160 (257)
34 PF00941 FAD_binding_5: FAD bi 94.2 0.074 1.6E-06 48.0 5.0 134 51-197 2-147 (171)
35 PRK09799 putative oxidoreducta 93.4 0.23 5.1E-06 47.9 7.1 74 53-131 4-78 (258)
36 TIGR03312 Se_sel_red_FAD proba 92.2 0.44 9.4E-06 46.0 7.1 70 54-130 4-76 (257)
37 PF09265 Cytokin-bind: Cytokin 91.5 0.088 1.9E-06 51.0 1.5 33 423-456 248-280 (281)
38 PLN00107 FAD-dependent oxidore 90.7 0.44 9.6E-06 45.4 5.2 27 425-453 171-197 (257)
39 TIGR02963 xanthine_xdhA xanthi 90.7 0.67 1.4E-05 48.7 7.1 81 51-135 192-274 (467)
40 TIGR03195 4hydrxCoA_B 4-hydrox 89.8 0.58 1.2E-05 46.6 5.5 74 53-130 6-81 (321)
41 PRK09971 xanthine dehydrogenas 88.8 0.71 1.5E-05 45.5 5.3 74 53-130 6-82 (291)
42 PF04030 ALO: D-arabinono-1,4- 87.4 0.42 9E-06 46.1 2.7 28 424-453 227-254 (259)
43 TIGR03199 pucC xanthine dehydr 86.0 1.2 2.5E-05 43.2 4.9 70 57-130 1-73 (264)
44 PF02913 FAD-oxidase_C: FAD li 84.2 2 4.3E-05 40.4 5.5 27 425-451 217-244 (248)
45 COG4981 Enoyl reductase domain 81.5 3.2 6.9E-05 43.5 5.9 114 5-132 111-232 (717)
46 PLN02906 xanthine dehydrogenas 77.6 4.5 9.9E-05 48.2 6.5 80 52-135 229-310 (1319)
47 PLN00192 aldehyde oxidase 74.3 7.4 0.00016 46.5 7.1 81 51-135 233-317 (1344)
48 TIGR02969 mam_aldehyde_ox alde 74.2 7.3 0.00016 46.5 7.0 78 52-133 237-316 (1330)
49 COG1319 CoxM Aerobic-type carb 71.7 12 0.00025 36.7 6.6 76 51-130 3-81 (284)
50 COG1519 KdtA 3-deoxy-D-manno-o 64.4 77 0.0017 32.7 10.9 92 50-179 260-366 (419)
51 COG0351 ThiD Hydroxymethylpyri 62.9 26 0.00056 33.8 6.9 96 4-131 122-220 (263)
52 PLN02805 D-lactate dehydrogena 62.2 17 0.00037 39.2 6.2 35 423-457 515-550 (555)
53 PRK11230 glycolate oxidase sub 61.3 13 0.00029 39.4 5.2 33 424-456 439-472 (499)
54 KOG1017 Predicted uracil phosp 60.1 10 0.00023 34.5 3.5 67 4-76 150-218 (267)
55 TIGR00387 glcD glycolate oxida 58.2 6 0.00013 40.9 1.9 28 424-451 382-410 (413)
56 KOG4730 D-arabinono-1, 4-lacto 56.1 6 0.00013 40.7 1.5 20 432-451 485-504 (518)
57 COG4630 XdhA Xanthine dehydrog 54.7 25 0.00055 35.4 5.4 80 52-135 204-285 (493)
58 PLN02465 L-galactono-1,4-lacto 46.9 1.2E+02 0.0026 32.9 9.5 27 424-453 538-564 (573)
59 PRK11282 glcE glycolate oxidas 39.5 17 0.00037 36.8 1.7 22 431-452 323-345 (352)
60 PF02601 Exonuc_VII_L: Exonucl 36.9 18 0.00039 35.9 1.5 58 20-84 18-87 (319)
61 KOG2862 Alanine-glyoxylate ami 34.3 58 0.0013 32.2 4.3 88 60-149 52-155 (385)
62 PRK06186 hypothetical protein; 34.1 34 0.00073 32.4 2.7 27 58-84 66-92 (229)
63 KOG2499 Beta-N-acetylhexosamin 32.9 37 0.0008 35.5 2.8 31 57-87 246-278 (542)
64 TIGR00237 xseA exodeoxyribonuc 30.9 28 0.00061 36.3 1.8 62 20-83 133-198 (432)
65 COG2144 Selenophosphate synthe 29.8 1E+02 0.0022 30.2 5.1 47 22-81 242-289 (324)
66 PRK00286 xseA exodeoxyribonucl 28.7 30 0.00065 36.1 1.5 56 21-83 140-203 (438)
67 TIGR01676 GLDHase galactonolac 27.9 30 0.00064 37.1 1.3 20 434-453 515-534 (541)
68 PF04472 DUF552: Protein of un 27.2 89 0.0019 23.6 3.5 33 53-107 2-34 (73)
69 COG4359 Uncharacterized conser 25.8 71 0.0015 29.1 3.1 25 63-87 78-102 (220)
70 PF08741 YwhD: YwhD family; I 25.1 1.6E+02 0.0035 25.9 5.0 46 73-126 2-51 (163)
71 COG1570 XseA Exonuclease VII, 24.7 40 0.00088 34.9 1.5 62 20-83 139-204 (440)
72 PF04753 Corona_NS2: Coronavir 22.9 52 0.0011 26.2 1.5 11 180-190 68-78 (109)
73 cd07033 TPP_PYR_DXS_TK_like Py 22.8 1.2E+02 0.0027 26.4 4.2 29 53-81 126-154 (156)
74 KOG4656 Copper chaperone for s 22.8 1.2E+02 0.0026 28.1 3.9 34 105-138 34-67 (247)
75 KOG1199 Short-chain alcohol de 22.7 67 0.0015 29.0 2.3 48 57-107 64-115 (260)
76 cd02742 GH20_hexosaminidase Be 22.7 80 0.0017 31.1 3.2 30 57-86 68-99 (303)
77 PF14658 EF-hand_9: EF-hand do 22.4 51 0.0011 24.6 1.3 15 435-449 35-49 (66)
78 PF01113 DapB_N: Dihydrodipico 22.3 1.2E+02 0.0025 25.5 3.7 36 50-85 67-102 (124)
79 PF09286 Pro-kuma_activ: Pro-k 22.3 81 0.0018 27.1 2.8 50 22-84 36-85 (143)
80 cd06568 GH20_SpHex_like A subg 22.2 83 0.0018 31.5 3.2 29 58-86 72-102 (329)
81 COG2720 Uncharacterized vancom 22.0 92 0.002 31.3 3.3 127 49-197 137-269 (376)
82 cd06565 GH20_GcnA-like Glycosy 21.7 86 0.0019 30.9 3.2 29 57-85 56-86 (301)
83 COG1154 Dxs Deoxyxylulose-5-ph 21.6 5.2E+02 0.011 28.1 9.0 82 50-136 440-527 (627)
84 PF15608 PELOTA_1: PELOTA RNA 21.2 1.2E+02 0.0025 24.8 3.2 34 50-83 55-89 (100)
85 cd05014 SIS_Kpsf KpsF-like pro 20.6 1.5E+02 0.0032 24.5 4.0 33 54-86 54-86 (128)
86 cd06570 GH20_chitobiase-like_1 20.5 96 0.0021 30.8 3.2 28 58-85 65-94 (311)
87 PF00728 Glyco_hydro_20: Glyco 20.4 80 0.0017 31.5 2.7 29 57-85 69-99 (351)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.1e-32 Score=283.58 Aligned_cols=159 Identities=25% Similarity=0.329 Sum_probs=138.8
Q ss_pred ccCCCCCCCCCEEEecCCHHHHHHHHHHHH--hcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcc-------eEEcC
Q 048047 42 VFSTPTNQKPPFIITPFHVSEIQAAIKCSK--KSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE-------ISVNA 112 (466)
Q Consensus 42 r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~--~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~-------v~~d~ 112 (466)
.|.......|.+|++|+|++||+++|++|+ ++++++++||||||+.|.+...+ |++|||++||+ +++|.
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~ 133 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSG 133 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcC
Confidence 476655668999999999999999999997 67999999999999998887754 99999999999 46889
Q ss_pred CCCEEEEcCCCcHHHHHHHHHHhCCCceee-cCCCCCCceEeeeccCCCcCCccchh-----------------------
Q 048047 113 EAKTAWVQSGATVGQLNYRIAEKSQNLLAF-PVGTCPGVAVGGHFSGGGYGALLRKY----------------------- 168 (466)
Q Consensus 113 ~~~~~~vg~G~~~~~v~~~l~~~g~~~l~~-~~G~~~~vg~gG~~lgGG~g~~s~~~----------------------- 168 (466)
+..+|+||+|++|.+|++++.++|. +. ..+.+..+++||.+.+||+|..+.+|
T Consensus 134 ~~~~VtV~aG~~~~dv~~~l~~~Gl---aP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s 210 (525)
T PLN02441 134 DGPYVDVSGGELWIDVLKATLKHGL---APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCS 210 (525)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHCCC---ccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeC
Confidence 9999999999999999999999974 33 34666778999999999998888888
Q ss_pred -----hHHHHHhhcCCCceEEEEEEEEEEEecCceeEEEEEec
Q 048047 169 -----DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPR 206 (466)
Q Consensus 169 -----dLfwalrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~ 206 (466)
|||||+|||+ |+|||||++|+|++|.|+......+.+
T Consensus 211 ~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y 252 (525)
T PLN02441 211 PTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLY 252 (525)
T ss_pred CCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEc
Confidence 9999999998 899999999999999998654444444
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.97 E-value=3.6e-28 Score=250.09 Aligned_cols=169 Identities=22% Similarity=0.338 Sum_probs=143.0
Q ss_pred cCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcC
Q 048047 43 FSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQS 121 (466)
Q Consensus 43 ~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~ 121 (466)
|+......|.+|++|+|++||+++|++|+++++++.++|+|||+.+.+.. + +++|||++||+| ++|++.++|+|++
T Consensus 7 W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~-~--gvvIdl~~l~~i~~id~~~~~vtV~a 83 (438)
T TIGR01678 7 WAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT-D--GFLIHLDKMNKVLQFDKEKKQITVEA 83 (438)
T ss_pred CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC-C--eEEEEhhhcCCceEEcCCCCEEEEcC
Confidence 66656668999999999999999999999999999999999999876543 2 799999999996 9999999999999
Q ss_pred CCcHHHHHHHHHHhCCCceeec-CCCCCCceEeeeccCCCcCCccchh----------------------------hHHH
Q 048047 122 GATVGQLNYRIAEKSQNLLAFP-VGTCPGVAVGGHFSGGGYGALLRKY----------------------------DLFW 172 (466)
Q Consensus 122 G~~~~~v~~~l~~~g~~~l~~~-~G~~~~vg~gG~~lgGG~g~~s~~~----------------------------dLfw 172 (466)
|+++.+|.+.|.++|. +++ .|.++.+++||.+.+|+||. +.+| ||||
T Consensus 84 G~~l~~L~~~L~~~Gl---~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~ 159 (438)
T TIGR01678 84 GIRLYQLHEQLDEHGY---SMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQ 159 (438)
T ss_pred CCCHHHHHHHHHHcCC---EecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHH
Confidence 9999999999999985 465 78899999999999999996 4554 9999
Q ss_pred HHhhcCCCceEEEEEEEEEEEecCceeEEEEEecchhhhHHHHHHHHHHHHH
Q 048047 173 AIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIAD 224 (466)
Q Consensus 173 alrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (466)
|++|+. |+|||||++|||++|....... ... ....++++.|++...
T Consensus 160 a~~~~~-G~lGIIt~vtl~l~p~~~l~~~--~~~---~~~~~~~~~~~~~~~ 205 (438)
T TIGR01678 160 AARVSL-GCLGIIVTVTIQVVPQFHLQET--SFV---STLKELLDNWDSHWK 205 (438)
T ss_pred HHhcCC-CceEeeEEEEEEEEeccceEEE--Eec---CCHHHHHHHHHHHhh
Confidence 999998 7999999999999998764322 111 134567777766543
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.96 E-value=5.5e-28 Score=254.26 Aligned_cols=154 Identities=21% Similarity=0.329 Sum_probs=139.5
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHHH
Q 048047 49 QKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 49 ~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~~ 127 (466)
..|.+||+|+|++||+++|++|+++++|+++|||||++.|.+.... ++++|||++||+| ++|++..+|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~~-ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAPH-GGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCCC-CEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 4699999999999999999999999999999999999988776542 5899999999997 5999999999999999999
Q ss_pred HHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh---------------------------------hHHHHH
Q 048047 128 LNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY---------------------------------DLFWAI 174 (466)
Q Consensus 128 v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~---------------------------------dLfwal 174 (466)
|+++|.++|. .+|...++.+++||.++++++|..+.+| ||||++
T Consensus 211 L~~~L~~~Gl---~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~ 287 (555)
T PLN02805 211 LNEYLEPYGL---FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLV 287 (555)
T ss_pred HHHHHHHcCC---EeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHh
Confidence 9999999984 6887778888999999999999988888 999999
Q ss_pred hhcCCCceEEEEEEEEEEEecCceeEEEEEecc
Q 048047 175 RGGGGPSFGIIISWKIELVDVPSTVTVFAVPRT 207 (466)
Q Consensus 175 rG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~ 207 (466)
+|++ |+|||||++++|++|.|+......+.|+
T Consensus 288 ~Gse-GtLGIIT~~tlrl~p~P~~~~~~~~~f~ 319 (555)
T PLN02805 288 IGSE-GTLGVITEVTLRLQKIPQHSVVAMCNFP 319 (555)
T ss_pred ccCC-CceEEEEEEEEEeecCCcceEEEEEEcC
Confidence 9999 8999999999999999986555555554
No 4
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.96 E-value=1.1e-26 Score=238.71 Aligned_cols=166 Identities=20% Similarity=0.321 Sum_probs=134.0
Q ss_pred cCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcC
Q 048047 43 FSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQS 121 (466)
Q Consensus 43 ~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~ 121 (466)
|+......|.+|++|+|++||+++|++|++ ++.++|+|||+.+.+.. + +++|||++||+| ++|+++++|+||+
T Consensus 4 W~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~-~--g~~idl~~l~~i~~~d~~~~~v~v~a 77 (419)
T TIGR01679 4 WSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT-D--GTMISLTGLQGVVDVDQPTGLATVEA 77 (419)
T ss_pred CCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC-C--CEEEEhhHcCCceeecCCCCEEEEcC
Confidence 766666789999999999999999999974 79999999999876543 2 799999999996 8999999999999
Q ss_pred CCcHHHHHHHHHHhCCCceeec-CCCCCCceEeeeccCCCcCCccchh----------------------------hHHH
Q 048047 122 GATVGQLNYRIAEKSQNLLAFP-VGTCPGVAVGGHFSGGGYGALLRKY----------------------------DLFW 172 (466)
Q Consensus 122 G~~~~~v~~~l~~~g~~~l~~~-~G~~~~vg~gG~~lgGG~g~~s~~~----------------------------dLfw 172 (466)
|+++.+|.+.|.++|. +++ .|.+..+++||.+.+|+||.- ..| ||||
T Consensus 78 G~~l~~l~~~L~~~G~---~l~~~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~ 153 (419)
T TIGR01679 78 GTRLGALGPQLAQRGL---GLENQGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYL 153 (419)
T ss_pred CCCHHHHHHHHHHcCC---ccccCCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHH
Confidence 9999999999999985 344 366667789999998888853 233 9999
Q ss_pred HHhhcCCCceEEEEEEEEEEEecCceeEEEEEecchhhhHHHHHHHHHHHHH
Q 048047 173 AIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIAD 224 (466)
Q Consensus 173 alrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (466)
|+|||+ |+|||||++|+|++|.++.... ....+ ..++++.+.++..
T Consensus 154 a~~g~~-G~lGVIt~vtl~~~p~~~~~~~-~~~~~----~~~~~~~~~~~~~ 199 (419)
T TIGR01679 154 AARVSL-GALGVISQVTLQTVALFRLRRR-DWRRP----LAQTLERLDEFVD 199 (419)
T ss_pred HHHhCC-CceEEEEEEEEEeecceEeEEE-EEecC----HHHHHHHHHHHHh
Confidence 999999 8999999999999999864322 11122 2445555555543
No 5
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.96 E-value=1.1e-26 Score=243.79 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=131.2
Q ss_pred ccCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEec-cccCCCCCcccCC-CCeEEEEcCCCcc-eEEcCCCCEEE
Q 048047 42 VFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRS-GGHDLEGLSSISD-VPFIIVDLINFSE-ISVNAEAKTAW 118 (466)
Q Consensus 42 r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~-gGh~~~g~s~~~~-~~~~~idl~~l~~-v~~d~~~~~~~ 118 (466)
.|+......|.+|++|+|++||+++|++|++++++|.|+| +||++.+.+...+ +++++|||++||+ +++|.++++|+
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 3887777799999999999999999999999999999996 6999876554321 2369999999999 79999999999
Q ss_pred EcCCCcHHHHHHHHHHhCCCceeecC-CCCCCceEeeeccCCCcCCcc-chh----------------------------
Q 048047 119 VQSGATVGQLNYRIAEKSQNLLAFPV-GTCPGVAVGGHFSGGGYGALL-RKY---------------------------- 168 (466)
Q Consensus 119 vg~G~~~~~v~~~l~~~g~~~l~~~~-G~~~~vg~gG~~lgGG~g~~s-~~~---------------------------- 168 (466)
||+|+++.+|.+.|.++|. +++. |.+..++|||.+.+|+||... +.+
T Consensus 103 V~AG~~l~~L~~~L~~~Gl---al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~ 179 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAGL---ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRIL 179 (557)
T ss_pred ECCCCcHHHHHHHHHHcCC---EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEe
Confidence 9999999999999999984 5654 455678999999999888533 111
Q ss_pred ------hHHHHHhhcCCCceEEEEEEEEEEEecCce
Q 048047 169 ------DLFWAIRGGGGPSFGIIISWKIELVDVPST 198 (466)
Q Consensus 169 ------dLfwalrG~g~~~fGvVt~~~~k~~p~~~~ 198 (466)
|||||+|||+ |+|||||++|||++|.+..
T Consensus 180 s~~~~~dLf~a~rgsl-G~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 180 SEGDTPNEFNAAKVSL-GVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCCCHHHHHhhccCC-CccEeeeEEEEEEEccccc
Confidence 8999999999 8999999999999998763
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.95 E-value=2.9e-26 Score=239.94 Aligned_cols=153 Identities=24% Similarity=0.360 Sum_probs=134.3
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHH
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQSGATVG 126 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~ 126 (466)
...|.+|+.|+|++||+++|++|.++++|+++|||||++.|.+...+ +++|||++||+| ++|+++++|+|+||+++.
T Consensus 29 ~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~~--gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~ 106 (459)
T COG0277 29 RGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPDG--GVVLDLSRLNRILEIDPEDGTATVQAGVTLE 106 (459)
T ss_pred cCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCCC--cEEEEchhhcchhccCcCCCEEEEcCCccHH
Confidence 35799999999999999999999999999999999999988776652 899999999998 699999999999999999
Q ss_pred HHHHHHHHhCCCceeec-CCCC-CCceEeeeccCCCcCCccchh---------------------------------hHH
Q 048047 127 QLNYRIAEKSQNLLAFP-VGTC-PGVAVGGHFSGGGYGALLRKY---------------------------------DLF 171 (466)
Q Consensus 127 ~v~~~l~~~g~~~l~~~-~G~~-~~vg~gG~~lgGG~g~~s~~~---------------------------------dLf 171 (466)
+|.++|.++|+. +| .+.+ .+++|||++.++++|..+.+| ||+
T Consensus 107 ~l~~~l~~~G~~---~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~ 183 (459)
T COG0277 107 DLEKALAPHGLF---LPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLT 183 (459)
T ss_pred HHHHHHHHcCCc---cCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHH
Confidence 999999999864 44 3333 379999999999999999999 888
Q ss_pred HHHhhcCCCceEEEEEEEEEEEecCceeEEEEEec
Q 048047 172 WAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPR 206 (466)
Q Consensus 172 walrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~ 206 (466)
+++-|+. |+|||||++|+|++|.|+........+
T Consensus 184 ~l~iGs~-GtlGiit~~tl~l~p~~~~~~~~~~~~ 217 (459)
T COG0277 184 ALFVGSE-GTLGIITEATLKLLPLPETKATAVAGF 217 (459)
T ss_pred HhcccCC-ccceEEEEEEEEeccCCchheEEEEeC
Confidence 8888888 899999999999999987543333333
No 7
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.95 E-value=1.1e-26 Score=240.82 Aligned_cols=169 Identities=20% Similarity=0.247 Sum_probs=143.6
Q ss_pred ccCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEc
Q 048047 42 VFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQ 120 (466)
Q Consensus 42 r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg 120 (466)
+|+......|..+++|+|++||+++|++|++++++|.++|+|||+.+.+... +.+|||++||+| ++|+++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 4887777789999999999999999999999999999999999999877664 347999999995 999999999999
Q ss_pred CCCcHHHHHHHHHHhCCCceeec-CCCCCCceEeeeccCCCcCCccchh----------------------------hHH
Q 048047 121 SGATVGQLNYRIAEKSQNLLAFP-VGTCPGVAVGGHFSGGGYGALLRKY----------------------------DLF 171 (466)
Q Consensus 121 ~G~~~~~v~~~l~~~g~~~l~~~-~G~~~~vg~gG~~lgGG~g~~s~~~----------------------------dLf 171 (466)
||+++.+|.++|.++|. +++ .|.++.+++||.+.+|+||.-. ++ |||
T Consensus 130 AG~~l~~L~~~L~~~Gl---al~n~gsi~~~TIGGaiatgtHGtg~-~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF 205 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGI---TLQNFASIREQQIGGIIQVGAHGTGA-KLPPIDEQVIAMKLVTPAKGTIEISKDKDPELF 205 (541)
T ss_pred CCCCHHHHHHHHHHcCC---EeccCCCCCCceEccccccCCcCCCC-CCCCHHHhEEEEEEEECCCCEEEECCCCCHHHH
Confidence 99999999999999985 454 5888999999999999999743 34 999
Q ss_pred HHHhhcCCCceEEEEEEEEEEEecCceeEEEEEecchhhhHHHHHHHHHHHH
Q 048047 172 WAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIA 223 (466)
Q Consensus 172 walrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (466)
||+|||+ |+|||||++|||++|.+... ......+ ..++++.+.++.
T Consensus 206 ~Aargsl-G~LGVItevTLr~~Pa~~l~-~~~~~~~----~~e~l~~~~~~~ 251 (541)
T TIGR01676 206 FLARCGL-GGLGVVAEVTLQCVERQELV-EHTFISN----MKDIKKNHKKFL 251 (541)
T ss_pred HHHhcCC-CceEeEEEEEEEEEecccee-EEEEecC----HHHHHHHHHHHH
Confidence 9999999 79999999999999998743 2222222 355666666654
No 8
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.95 E-value=2.9e-26 Score=239.95 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=134.0
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHH
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQSGATVG 126 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~ 126 (466)
...|.+||+|+|++||+++|++|+++++||++||+||+..|.+.... ++++|||++||+| ++|++..+|+||||+++.
T Consensus 53 ~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~~-~gividl~~ln~I~~id~~~~~v~VeaGv~~~ 131 (499)
T PRK11230 53 RTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPLE-KGVLLVMARFNRILDINPVGRRARVQPGVRNL 131 (499)
T ss_pred CCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccCC-CcEEEEcccCCCceEEcCCCCEEEEcCCccHH
Confidence 45799999999999999999999999999999999999877665432 4899999999996 899999999999999999
Q ss_pred HHHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh--------------------------------hHHHHH
Q 048047 127 QLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY--------------------------------DLFWAI 174 (466)
Q Consensus 127 ~v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~--------------------------------dLfwal 174 (466)
+|.++|.++|.. +....++.....+||.+.+++.|..+.+| ||+|++
T Consensus 132 ~L~~~l~~~Gl~-~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 132 AISQAAAPHGLY-YAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHcCCe-eCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 999999999863 22223444567899999988777766666 999999
Q ss_pred hhcCCCceEEEEEEEEEEEecCceeEEEEEecc
Q 048047 175 RGGGGPSFGIIISWKIELVDVPSTVTVFAVPRT 207 (466)
Q Consensus 175 rG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~ 207 (466)
+|++ |+|||||++|||++|.|+......+.|.
T Consensus 211 ~Gs~-GtlGIIt~atlkl~p~p~~~~~~~~~f~ 242 (499)
T PRK11230 211 TGSE-GMLGVVTEVTVKLLPKPPVARVLLASFD 242 (499)
T ss_pred ccCC-CccEEEEEEEEEEEcCCcceEEEEEECC
Confidence 9999 8999999999999999986555555553
No 9
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.92 E-value=1.5e-24 Score=223.31 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=129.0
Q ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHHHHHHHH
Q 048047 54 IITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQSGATVGQLNYRI 132 (466)
Q Consensus 54 vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~~v~~~l 132 (466)
||+|+|++||+++|++|+++++|+.+|||||++.|.+...+ ++++|||++||+| ++|+++.+++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~-~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEE-GGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCC-CeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 68999999999999999999999999999999877665443 5899999999997 999999999999999999999999
Q ss_pred HHhCCCceeec--CCCCCCceEeeeccCCCcCCccchh---------------------------------hHHHHHhhc
Q 048047 133 AEKSQNLLAFP--VGTCPGVAVGGHFSGGGYGALLRKY---------------------------------DLFWAIRGG 177 (466)
Q Consensus 133 ~~~g~~~l~~~--~G~~~~vg~gG~~lgGG~g~~s~~~---------------------------------dLfwalrG~ 177 (466)
.++|. .++ .++.....+||.+.+++.|..+.+| ||+|.+.|+
T Consensus 80 ~~~gl---~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs 156 (413)
T TIGR00387 80 EEHNL---FYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS 156 (413)
T ss_pred HHcCC---eeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC
Confidence 99985 444 3334456799999999888877777 899999999
Q ss_pred CCCceEEEEEEEEEEEecCceeEEEEEecc
Q 048047 178 GGPSFGIIISWKIELVDVPSTVTVFAVPRT 207 (466)
Q Consensus 178 g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~ 207 (466)
. |+|||||+++||++|.|+......+.+.
T Consensus 157 ~-GtlGiit~~~lkl~p~p~~~~~~~~~f~ 185 (413)
T TIGR00387 157 E-GTLGIVTEATLKLLPKPENIVVALAFFD 185 (413)
T ss_pred C-ccceEEEEEEEEeecCCCccEEEEEECC
Confidence 9 7999999999999999986544455454
No 10
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.92 E-value=4.4e-24 Score=212.62 Aligned_cols=141 Identities=18% Similarity=0.286 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhcCCcEEEecccc-CCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHHHHHHHHHHhC
Q 048047 59 HVSEIQAAIKCSKKSGLQIRVRSGGH-DLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQSGATVGQLNYRIAEKS 136 (466)
Q Consensus 59 ~~~dV~~~v~~a~~~~~~~~vr~gGh-~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~~v~~~l~~~g 136 (466)
.++||+++|++|+++++|+.+||||| ++.|.+. + +++|||++||+| ++|++..+|+|++|+++.+|.++|+++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~--~--~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL--A--GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC--C--CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 46899999999999999999999997 4666532 2 579999999996 8999999999999999999999999999
Q ss_pred CCceeecC-CCCCCceEeeeccCCCcCCccchh---------------------------------hHHHHHhhcCCCce
Q 048047 137 QNLLAFPV-GTCPGVAVGGHFSGGGYGALLRKY---------------------------------DLFWAIRGGGGPSF 182 (466)
Q Consensus 137 ~~~l~~~~-G~~~~vg~gG~~lgGG~g~~s~~~---------------------------------dLfwalrG~g~~~f 182 (466)
.. +.+.. ..++..++||.+.+|++|+.+.+| ||||+++|++ |+|
T Consensus 79 ~~-lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~-GtL 156 (352)
T PRK11282 79 QM-LPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSL-GTL 156 (352)
T ss_pred Ce-eCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCC-chh
Confidence 64 33423 345568899999999999999888 9999999999 899
Q ss_pred EEEEEEEEEEEecCceeEEEEEe
Q 048047 183 GIIISWKIELVDVPSTVTVFAVP 205 (466)
Q Consensus 183 GvVt~~~~k~~p~~~~~~~~~~~ 205 (466)
||||++|||++|.|+......+.
T Consensus 157 GVitevtlkl~P~p~~~~t~~~~ 179 (352)
T PRK11282 157 GVLLEVSLKVLPRPRAELTLRLE 179 (352)
T ss_pred hhheEEEEEEEecCceEEEEEEe
Confidence 99999999999999854333333
No 11
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.91 E-value=2e-23 Score=218.18 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=140.5
Q ss_pred ccCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEc
Q 048047 42 VFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQ 120 (466)
Q Consensus 42 r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg 120 (466)
+|+......|.+++.|+|++||+++|++|+++++++.++|+|||+.+.+..++ + +|||++|++| ++|++.++|+||
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td~--g-lIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSRE--G-MVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCCC--E-EEECcCCCCcEEEeCCCCEEEEc
Confidence 58887788999999999999999999999999999999999999988766543 4 6899999996 899999999999
Q ss_pred CCCcHHHHHHHHHHhCCCceeecC-CCCCCceEeeeccCCCcCCccchh---------------------------hHHH
Q 048047 121 SGATVGQLNYRIAEKSQNLLAFPV-GTCPGVAVGGHFSGGGYGALLRKY---------------------------DLFW 172 (466)
Q Consensus 121 ~G~~~~~v~~~l~~~g~~~l~~~~-G~~~~vg~gG~~lgGG~g~~s~~~---------------------------dLfw 172 (466)
+|+++.+|.+.|.++|. +++. |.+...+|||.+.+|+||.-.+.- ||||
T Consensus 165 AG~~l~~L~~~L~~~GL---al~n~g~I~~~TIGGaIstGtHGtG~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHGL---TLQNYASIREQQIGGFIQVGAHGTGARIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcCC---EeccCCCCCCeeecchhhCCCCCcCCCcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 99999999999999985 4554 666778899999999998743211 8999
Q ss_pred HHhhcCCCceEEEEEEEEEEEecCceeEEEEEecchhhhHHHHHHHHHHHH
Q 048047 173 AIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRTLEQNATMLLHKWQYIA 223 (466)
Q Consensus 173 alrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (466)
|.|++. |.|||||++|||+.|.++.. .-....+ ..++++.+.++.
T Consensus 242 aar~gl-G~lGVIteVTLql~P~~~L~-~~~~~~~----~~~~~~~~~~~~ 286 (573)
T PLN02465 242 LARCGL-GGLGVVAEVTLQCVPAHRLV-EHTFVSN----RKEIKKNHKKWL 286 (573)
T ss_pred HhhccC-CCCcEEEEEEEEEEecCceE-EEEEEec----HHHHHHHHHHHH
Confidence 999999 79999999999999998743 2222222 244555555554
No 12
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.88 E-value=1e-21 Score=192.82 Aligned_cols=147 Identities=24% Similarity=0.325 Sum_probs=122.0
Q ss_pred CCCCCCCEEEecCCHHHHHHHHHHHHhc--CCcEEEeccccCCCCCcccCCCCeEEEEcC---CCcce-EEcCCCCEEEE
Q 048047 46 PTNQKPPFIITPFHVSEIQAAIKCSKKS--GLQIRVRSGGHDLEGLSSISDVPFIIVDLI---NFSEI-SVNAEAKTAWV 119 (466)
Q Consensus 46 ~~~~~p~~vv~p~~~~dV~~~v~~a~~~--~~~~~vr~gGh~~~g~s~~~~~~~~~idl~---~l~~v-~~d~~~~~~~v 119 (466)
.....|.+|..|+|++||+.++|+|... ++|+++||+|||..|.+.... +|++|.|. .|+++ .+..+...|.|
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV 137 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDV 137 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEe
Confidence 3455899999999999999999999999 999999999999999887733 48666655 45554 45666799999
Q ss_pred cCCCcHHHHHHHHHHhCCCceeecCCCCC-CceEeeeccCCCcCCccchh----------------------------hH
Q 048047 120 QSGATVGQLNYRIAEKSQNLLAFPVGTCP-GVAVGGHFSGGGYGALLRKY----------------------------DL 170 (466)
Q Consensus 120 g~G~~~~~v~~~l~~~g~~~l~~~~G~~~-~vg~gG~~lgGG~g~~s~~~----------------------------dL 170 (466)
.||..|-+|.+++.++|. +...++-+ ...|||.+..+|+|-..-+| +|
T Consensus 138 ~~g~~Widll~~t~e~GL---~p~swtDyl~ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~l 214 (505)
T KOG1231|consen 138 SAGTLWIDLLDYTLEYGL---SPFSWTDYLPLTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNL 214 (505)
T ss_pred eCChhHHHHHHHHHHcCC---CccCcCCccceeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCcee
Confidence 999999999999999984 22222221 26688999989988887777 99
Q ss_pred HHHHhhcCCCceEEEEEEEEEEEecCc
Q 048047 171 FWAIRGGGGPSFGIIISWKIELVDVPS 197 (466)
Q Consensus 171 fwalrG~g~~~fGvVt~~~~k~~p~~~ 197 (466)
|.++-||- |+|||||+++++++|+|+
T Consensus 215 f~~vlGgl-GqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 215 FFLVLGGL-GQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeccC-cceeeEEEEEEEeccCCc
Confidence 99999999 899999999999999994
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.87 E-value=4.8e-22 Score=174.01 Aligned_cols=115 Identities=33% Similarity=0.527 Sum_probs=103.4
Q ss_pred CCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcc-eEEcCCCCEEEEcCCCcHHHHH
Q 048047 51 PPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE-ISVNAEAKTAWVQSGATVGQLN 129 (466)
Q Consensus 51 p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~-v~~d~~~~~~~vg~G~~~~~v~ 129 (466)
|.+||+|+|++||+++|++|+++++++.+||+||++.+.+... ++++|||++|++ +++|++.++++|++|++|.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~~~--~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSSDE--GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTSST--TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccccC--CcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 7899999999999999999999999999999999998777634 499999999999 7899999999999999999999
Q ss_pred HHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh
Q 048047 130 YRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY 168 (466)
Q Consensus 130 ~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~ 168 (466)
++|.++|.. +.+..+.+..+++||++.+||+|..++.|
T Consensus 79 ~~l~~~g~~-~~~~~~~~~~~tvGG~i~~~~~g~~~~~~ 116 (139)
T PF01565_consen 79 EALAPRGLM-LPVEPGSGIPGTVGGAIAGNGHGSGSRRY 116 (139)
T ss_dssp HHHHHHTEE-ESSGGGSTTTSBHHHHHHTT-EETTHHHH
T ss_pred ccccccccc-ccccccccccceEchhhcCCCcccccccc
Confidence 999999853 33347888899999999999999988866
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.80 E-value=9.2e-20 Score=179.34 Aligned_cols=144 Identities=20% Similarity=0.223 Sum_probs=118.3
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCC-CcceEEcCCCCEEEEcCCCcHHH
Q 048047 49 QKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLIN-FSEISVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 49 ~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~-l~~v~~d~~~~~~~vg~G~~~~~ 127 (466)
..|.+++.|+|++||+++|++|+++++|+.++||||+......+. ++++|||++ |+.+++ ++.+++||+|++|.+
T Consensus 29 g~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g~--~gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~~ 104 (298)
T PRK13905 29 GPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGGI--RGVVIRLGKGLNEIEV--EGNRITAGAGAPLIK 104 (298)
T ss_pred ceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCCc--ceEEEEecCCcceEEe--cCCEEEEECCCcHHH
Confidence 468899999999999999999999999999999999965322222 289999998 999855 456899999999999
Q ss_pred HHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------hHHHHHhhcCCC-ceEEEEE
Q 048047 128 LNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------DLFWAIRGGGGP-SFGIIIS 187 (466)
Q Consensus 128 v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------dLfwalrG~g~~-~fGvVt~ 187 (466)
|.++|.++|..|+....|.+++||-+-.+..|+||.....+ |++|++|+++.+ .+||||+
T Consensus 105 L~~~l~~~Gl~gle~~~gipGTVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~~~e~~~~yR~s~~~~~~gII~~ 184 (298)
T PRK13905 105 LARFAAEAGLSGLEFAAGIPGTVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLSNEELGFGYRHSALQEEGLIVLS 184 (298)
T ss_pred HHHHHHHcCCCcchhccCCCcchhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEEHHHcCCcCccccCCCCCEEEEE
Confidence 99999999976677888888887744444577787322222 999999998744 4899999
Q ss_pred EEEEEEecC
Q 048047 188 WKIELVDVP 196 (466)
Q Consensus 188 ~~~k~~p~~ 196 (466)
++||++|..
T Consensus 185 ~~l~l~~~~ 193 (298)
T PRK13905 185 ATFQLEPGD 193 (298)
T ss_pred EEEEEcCCC
Confidence 999999874
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.79 E-value=2.6e-18 Score=175.95 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=126.3
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCC----CeEEEEcCCCcce-EEcCCCCEEEEcCC
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDV----PFIIVDLINFSEI-SVNAEAKTAWVQSG 122 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~----~~~~idl~~l~~v-~~d~~~~~~~vg~G 122 (466)
...|.+||+|+|++||+++|++|.++++|+++||||.+..|.++..++ ++|+|||++||+| .|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 346999999999999999999999999999999999999988876532 3799999999997 577 5678999999
Q ss_pred CcHHHHHHHHHHhCCCceeecCCCC-CCceEeeeccCCCcCCccchh---------------------------------
Q 048047 123 ATVGQLNYRIAEKSQNLLAFPVGTC-PGVAVGGHFSGGGYGALLRKY--------------------------------- 168 (466)
Q Consensus 123 ~~~~~v~~~l~~~g~~~l~~~~G~~-~~vg~gG~~lgGG~g~~s~~~--------------------------------- 168 (466)
+++.+|.++|+++|+. .....|+| -...+||.+..+.-|....+|
T Consensus 115 Vtl~~LeeaLk~~Gl~-p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGRE-PHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALYAQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCC-CCCcccccccCCCCccceEECCcchhheEcchhhhhhhhhEECCCCcEEEeeccCcccCCCHH
Confidence 9999999999999863 11111332 222355655533333333333
Q ss_pred ---------------------------------------------hHHHHH--hhcCCCceEEEEEEEEEEEecCceeEE
Q 048047 169 ---------------------------------------------DLFWAI--RGGGGPSFGIIISWKIELVDVPSTVTV 201 (466)
Q Consensus 169 ---------------------------------------------dLfwal--rG~g~~~fGvVt~~~~k~~p~~~~~~~ 201 (466)
||--.+ .|+. |.+||+ +++++++|.|+....
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGse-GkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCA-GKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCC-ceEEEE-EEEeccccCCCcceE
Confidence 776766 7888 799999 999999999987777
Q ss_pred EEEecchhhhHHHHHH
Q 048047 202 FAVPRTLEQNATMLLH 217 (466)
Q Consensus 202 ~~~~~~~~~~~~~~~~ 217 (466)
+.+.++....+.++..
T Consensus 272 f~ig~n~~~~~~~~rr 287 (564)
T PRK11183 272 FYIGTNDPAVLTEIRR 287 (564)
T ss_pred EEEeCCCHHHHHHHHH
Confidence 7777764434444333
No 16
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.74 E-value=1e-17 Score=167.24 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=125.7
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHH
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~ 127 (466)
...+.+++.|+|++|+++++++|+++++|+.|+|||||..-...+ ..+++|+++ ++.++++.+..+++||+|+.|.+
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g--~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDG--FDGTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCC--ccEEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 346889999999999999999999999999999999997532111 238999998 58898886677999999999999
Q ss_pred HHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh--------------------hHHHHHhhcC--CCceEEE
Q 048047 128 LNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY--------------------DLFWAIRGGG--GPSFGII 185 (466)
Q Consensus 128 v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~--------------------dLfwalrG~g--~~~fGvV 185 (466)
|.+.+.++|..||....|.+++||.+.++.+|++|...... ||+|++|++. +++++||
T Consensus 107 l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~~~el~f~YR~S~f~~~~~~II 186 (363)
T PRK13903 107 VVARTVEAGLGGLECLSGIPGSAGATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVPAADLGFGYRTSVLKHSDRAVV 186 (363)
T ss_pred HHHHHHHcCCccccccCCCCcchhhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEEHHHcceeccccccCCCCCEEE
Confidence 99999999998999999999999999999999998743333 9999999962 1358999
Q ss_pred EEEEEEEEecC
Q 048047 186 ISWKIELVDVP 196 (466)
Q Consensus 186 t~~~~k~~p~~ 196 (466)
|+++||++|..
T Consensus 187 l~a~f~L~~~~ 197 (363)
T PRK13903 187 LEVEFQLDPSG 197 (363)
T ss_pred EEEEEEEEcCC
Confidence 99999999873
No 17
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.71 E-value=2.7e-17 Score=161.72 Aligned_cols=144 Identities=21% Similarity=0.228 Sum_probs=120.2
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHH
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~ 127 (466)
...|.++|.|+|++||+++|++|+++++|+.|+||||+......+. ++++|+|++|++|+++ ..+++||+|+.|.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g~--~GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGGI--RGITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCCe--eEEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 3468999999999999999999999999999999999976322112 2899999999999886 45899999999999
Q ss_pred HHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------hHHHHHhhcCC-CceEEEEE
Q 048047 128 LNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------DLFWAIRGGGG-PSFGIIIS 187 (466)
Q Consensus 128 v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------dLfwalrG~g~-~~fGvVt~ 187 (466)
|.+++.++|..|+.++.|.+++||-+-.+..|++|...... |+.|+.|.+.- .+..||++
T Consensus 110 L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~~e~~f~YR~s~~~~~~~iil~ 189 (305)
T PRK12436 110 VSRIALDHNLTGLEFACGIPGSVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTKEAFEFGYRKSVFANNHYIILE 189 (305)
T ss_pred HHHHHHHcCCccchhhcCCccchhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEHHHhcCcCCCCcCCCCCEEEEE
Confidence 99999999987788899999998876677788888433222 99999999853 24679999
Q ss_pred EEEEEEec
Q 048047 188 WKIELVDV 195 (466)
Q Consensus 188 ~~~k~~p~ 195 (466)
++||+.+.
T Consensus 190 a~~~l~~~ 197 (305)
T PRK12436 190 ARFELEEG 197 (305)
T ss_pred EEEEEcCC
Confidence 99999765
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.67 E-value=7.8e-16 Score=151.69 Aligned_cols=146 Identities=24% Similarity=0.311 Sum_probs=128.0
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcc-eEEcCCCCEEEEcCCCcHHH
Q 048047 49 QKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE-ISVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 49 ~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~-v~~d~~~~~~~vg~G~~~~~ 127 (466)
.+.+-|-+|+|++|+.++|+.|+++|.++.+.+.|||..+....+ |.+|+|..||+ +++|++..++||++|+++.+
T Consensus 48 c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQ 124 (518)
T KOG4730|consen 48 CKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQ 124 (518)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEeccCcCHHH
Confidence 355668889999999999999999999999999999998876654 58899999999 68999999999999999999
Q ss_pred HHHHHHHhCCCceeec-CCCCCCceEeeeccCCCcCCccchh----------------------------hHHHHHhhcC
Q 048047 128 LNYRIAEKSQNLLAFP-VGTCPGVAVGGHFSGGGYGALLRKY----------------------------DLFWAIRGGG 178 (466)
Q Consensus 128 v~~~l~~~g~~~l~~~-~G~~~~vg~gG~~lgGG~g~~s~~~----------------------------dLfwalrG~g 178 (466)
|.+++++.| ++++ .|.-..+.|||++..|.||.--..| |+|-|.|=+-
T Consensus 125 Lie~~~~~G---lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~AAkvSL 201 (518)
T KOG4730|consen 125 LIEELAKLG---LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNAAKVSL 201 (518)
T ss_pred HHHHHHhcC---ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhhhhhcc
Confidence 999999987 4565 4666678899999999998755534 9999999999
Q ss_pred CCceEEEEEEEEEEEecCceeEE
Q 048047 179 GPSFGIIISWKIELVDVPSTVTV 201 (466)
Q Consensus 179 ~~~fGvVt~~~~k~~p~~~~~~~ 201 (466)
|-+|||.++|+++.|.-+....
T Consensus 202 -G~LGVIs~VTl~~vp~Fk~s~t 223 (518)
T KOG4730|consen 202 -GVLGVISQVTLSVVPAFKRSLT 223 (518)
T ss_pred -cceeEEEEEEEEEEecceeeeE
Confidence 7899999999999998875433
No 19
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=3.5e-16 Score=153.48 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=107.6
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCC-CcceEEcCCCCEEEEcCCCcHH
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLIN-FSEISVNAEAKTAWVQSGATVG 126 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~-l~~v~~d~~~~~~~vg~G~~~~ 126 (466)
...|.++|.|+|++||+++|++|+++++|+.++|||||..-...+- ++++|+|++ ++.+.++ +.+++||+|+.|.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~g~--~gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~ 108 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADAGV--RGVVLRLPQDFPGESTD--GGRLVLGAGAPIS 108 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCCCE--eeEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 3478899999999999999999999999999999999974221111 279999976 5667654 4599999999999
Q ss_pred HHHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------------hHHHHHhhcCCCc
Q 048047 127 QLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------------DLFWAIRGGGGPS 181 (466)
Q Consensus 127 ~v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------------dLfwalrG~g~~~ 181 (466)
+|.+++.++|.. |....+|+.| ++||+.....+.| |+.|++|++.-+.
T Consensus 109 ~L~~~~~~~GL~------GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G~~~~~~~e~~f~YR~s~~~~ 181 (302)
T PRK14652 109 RLPARAHAHGLV------GMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADGAGFVPAAALGYAYRTCRLPP 181 (302)
T ss_pred HHHHHHHHcCCc------ccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCCcEEeehhhcCcccceeccCC
Confidence 999999999864 4444555544 5566655555544 9999999975223
Q ss_pred eEEEEEEEEEEEecC
Q 048047 182 FGIIISWKIELVDVP 196 (466)
Q Consensus 182 fGvVt~~~~k~~p~~ 196 (466)
.||||+++||++|..
T Consensus 182 ~~II~~a~~~L~~~~ 196 (302)
T PRK14652 182 GAVITRVEVRLRPGD 196 (302)
T ss_pred CeEEEEEEEEEecCC
Confidence 489999999999854
No 20
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.65 E-value=5.9e-17 Score=113.26 Aligned_cols=47 Identities=45% Similarity=0.810 Sum_probs=34.8
Q ss_pred ccccccCCccCCCCCCCCCchhchhhhhhhhccccHHHHHHhhhccCCCCCcccCCCCC
Q 048047 399 AYINYRDLDIGTNNKLGDTSVQEAGVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIP 457 (466)
Q Consensus 399 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~yyg~n~~RL~~IK~kYDP~nvF~~~~~I~ 457 (466)
+|+||+|.+++. ..|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~~------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 699999988651 37999999999999999999999999999999996
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=3e-15 Score=147.31 Aligned_cols=142 Identities=18% Similarity=0.230 Sum_probs=117.3
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHHH
Q 048047 49 QKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQL 128 (466)
Q Consensus 49 ~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~v 128 (466)
..+.++|.|+|++||+++|++|+++++|+.++||||+......+. ++++|+|++|++|+++. .+++||+|+.|.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g~--~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGGI--RGIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCCc--ceEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 358899999999999999999999999999999999975322222 38999999999998864 48999999999999
Q ss_pred HHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------hHHHHHhhcCCCc-eEEEEEE
Q 048047 129 NYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------DLFWAIRGGGGPS-FGIIISW 188 (466)
Q Consensus 129 ~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------dLfwalrG~g~~~-fGvVt~~ 188 (466)
.+.+.++|..|+....|...+||-+..+..|++|-..... |+.|+.|-..-.. --||+++
T Consensus 111 ~~~~~~~Gl~GlE~~~gIPGtVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~~e~~f~YR~S~~~~~~~ii~~~ 190 (307)
T PRK13906 111 SRVARDYALTGLEFACGIPGSIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTTKELELDYRNSIIQKEHLVVLEA 190 (307)
T ss_pred HHHHHHcCCccchhhcCCCccHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEHHHccCcCCcccCCCCCEEEEEE
Confidence 9999999987777888888888877778888887433322 9999999876322 2499999
Q ss_pred EEEEEe
Q 048047 189 KIELVD 194 (466)
Q Consensus 189 ~~k~~p 194 (466)
+||+.|
T Consensus 191 ~~~l~~ 196 (307)
T PRK13906 191 AFTLAP 196 (307)
T ss_pred EEEECC
Confidence 999976
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.60 E-value=3.7e-15 Score=145.39 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=110.8
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHH
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~ 127 (466)
...|.+++.|+|++||+++|++|+++++|+.|+|||||....+... ++++|++++|+++.+++ ..+++||+|+.|.+
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~~--~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~ 86 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDGR--GGVIINLGKGIDIEDDE-GEYVHVGGGENWHK 86 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCCc--CeEEEECCCCceEEEec-CCEEEEEcCCcHHH
Confidence 3468899999999999999999999999999999999987655444 48999999999887776 56999999999999
Q ss_pred HHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------hHHHHHhhcCCCc-e-EEEE
Q 048047 128 LNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------DLFWAIRGGGGPS-F-GIII 186 (466)
Q Consensus 128 v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------dLfwalrG~g~~~-f-GvVt 186 (466)
|.+++.++|..|+....|..+++|-+=.+..|++|.-.... |+.|+.|-+.-.. . .||+
T Consensus 87 l~~~~~~~Gl~GlE~l~giPGtvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~~~~~f~YR~S~f~~~~~~iil 166 (284)
T TIGR00179 87 LVKYALKNGLSGLEFLAGIPGTVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTNEQLGFGYRTSIFQHKYVGLVL 166 (284)
T ss_pred HHHHHHHCCCcccccCCCCCchHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEHHHccccCCccccCCCCcEEEE
Confidence 99999999976555555555544332223334444322211 9999999876322 2 6999
Q ss_pred EEEEEEEe
Q 048047 187 SWKIELVD 194 (466)
Q Consensus 187 ~~~~k~~p 194 (466)
+.+|++.+
T Consensus 167 ~a~~~l~~ 174 (284)
T TIGR00179 167 KAEFQLTL 174 (284)
T ss_pred EEEEEecc
Confidence 99998843
No 23
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.55 E-value=6.7e-14 Score=135.11 Aligned_cols=157 Identities=20% Similarity=0.297 Sum_probs=130.6
Q ss_pred CCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCC---CeEEEEcCCCcce-EEcCCCCEEEEc
Q 048047 45 TPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDV---PFIIVDLINFSEI-SVNAEAKTAWVQ 120 (466)
Q Consensus 45 ~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~---~~~~idl~~l~~v-~~d~~~~~~~vg 120 (466)
....+.|..||.|++.+||.++|+.|.+|++-+.+.|||+|.++.-..+.+ --+.+|++.||+| -+|.++-|++++
T Consensus 155 gkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~e 234 (613)
T KOG1233|consen 155 GKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAE 234 (613)
T ss_pred CccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEe
Confidence 344568999999999999999999999999999999999997543222221 2467899999996 689999999999
Q ss_pred CCCcHHHHHHHHHHhCCCceeecCCCCCCc----eEeeeccCCCcCCccchh----------------------------
Q 048047 121 SGATVGQLNYRIAEKSQNLLAFPVGTCPGV----AVGGHFSGGGYGALLRKY---------------------------- 168 (466)
Q Consensus 121 ~G~~~~~v~~~l~~~g~~~l~~~~G~~~~v----g~gG~~lgGG~g~~s~~~---------------------------- 168 (466)
+|..-.+|.+.|.+.| +..|.-|+. .+||++..-..|.--..|
T Consensus 235 aGIvGQ~LERqL~~~G-----~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRm 309 (613)
T KOG1233|consen 235 AGIVGQSLERQLNKKG-----FTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRM 309 (613)
T ss_pred cCcchHHHHHHHhhcC-----cccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcc
Confidence 9999999999999987 456777653 679999998888877777
Q ss_pred ----hHHHHHhhcCCCceEEEEEEEEEEEecCceeEEEEEecc
Q 048047 169 ----DLFWAIRGGGGPSFGIIISWKIELVDVPSTVTVFAVPRT 207 (466)
Q Consensus 169 ----dLfwalrG~g~~~fGvVt~~~~k~~p~~~~~~~~~~~~~ 207 (466)
|+-.-+-|+. |++||||++|+|+.|.|..-...++.|+
T Consensus 310 S~GPDihh~IlGSE-GTLGVitEvtiKirPiPe~~ryGS~aFP 351 (613)
T KOG1233|consen 310 SSGPDIHHIILGSE-GTLGVITEVTIKIRPIPEVKRYGSFAFP 351 (613)
T ss_pred cCCCCcceEEeccC-cceeEEEEEEEEEeechhhhhcCccccC
Confidence 9999999999 8999999999999999985444445453
No 24
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.53 E-value=1.8e-14 Score=138.84 Aligned_cols=159 Identities=20% Similarity=0.258 Sum_probs=133.0
Q ss_pred cccccCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEE
Q 048047 39 QNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTA 117 (466)
Q Consensus 39 ~n~r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~ 117 (466)
+|..|..........|..|.|+++|++++++|+++++.++++||-++..|.|...- +-|||.|.+||+| ++|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPvf-DEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPVF-DEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccch-HHHhhhhhhhccccccccccceE
Confidence 46667776666788999999999999999999999999999999999888777653 3799999999996 699999999
Q ss_pred EEcCCCcHHHHHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-----------------------------
Q 048047 118 WVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY----------------------------- 168 (466)
Q Consensus 118 ~vg~G~~~~~v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~----------------------------- 168 (466)
++.+|+++.++...|+++|.. +.+-.|.-+++-|||.+....-|..--+|
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m-~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKD 235 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYM-FPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKD 235 (511)
T ss_pred EeccceEehhhHHHHHhcCce-eeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhccc
Confidence 999999999999999999975 55557888888899987754433322233
Q ss_pred ----hHHHHHhhcCCCceEEEEEEEEEEEecCceeE
Q 048047 169 ----DLFWAIRGGGGPSFGIIISWKIELVDVPSTVT 200 (466)
Q Consensus 169 ----dLfwalrG~g~~~fGvVt~~~~k~~p~~~~~~ 200 (466)
||=--.-|+. |++||||+.++-+.|.|+.+.
T Consensus 236 NTgydlkhLFIGSE-GtlGVvT~vSil~~~kpksvn 270 (511)
T KOG1232|consen 236 NTGYDLKHLFIGSE-GTLGVVTKVSILAPPKPKSVN 270 (511)
T ss_pred CccccchhheecCC-ceeeEEeeEEEeecCCCccee
Confidence 6666667999 899999999999999998543
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.51 E-value=1.7e-13 Score=134.34 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=118.0
Q ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCc-ceEEcCCCCEEEEcCCCcHHHH
Q 048047 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFS-EISVNAEAKTAWVQSGATVGQL 128 (466)
Q Consensus 50 ~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~-~v~~d~~~~~~~vg~G~~~~~v 128 (466)
...++|.|+|++|+++++++|+++++|+.|+|||||......+.+ |++|+++.++ ++..+.+..+++||+|+.|.+|
T Consensus 20 ~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g~~--GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~l 97 (295)
T PRK14649 20 PARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEGFD--GLVARYRGQRWELHEHGDTAEVWVEAGAPMAGT 97 (295)
T ss_pred eeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCCcC--eEEEEecCCCcEEEEeCCcEEEEEEcCCcHHHH
Confidence 566899999999999999999999999999999999876554443 8999998854 7776666559999999999999
Q ss_pred HHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------hHHHHHhhcCCCc--------
Q 048047 129 NYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------DLFWAIRGGGGPS-------- 181 (466)
Q Consensus 129 ~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------dLfwalrG~g~~~-------- 181 (466)
.+.+.++|..|+....|..+|||-+.++..|.+|...... ||+|+.|-+.--.
T Consensus 98 ~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~~el~f~YR~S~~~~~~~~~~~~ 177 (295)
T PRK14649 98 ARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSVHDFAYGYRTSVLKQLRADGITW 177 (295)
T ss_pred HHHHHHcCCccccccCCCCcchhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeHHHcCcccceeeccccccccccc
Confidence 9999999988888888888888877788888887644333 9999998875221
Q ss_pred -eEEEEEEEEEEEec
Q 048047 182 -FGIIISWKIELVDV 195 (466)
Q Consensus 182 -fGvVt~~~~k~~p~ 195 (466)
--||++.+|++.|.
T Consensus 178 ~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 178 RPPLVLAARFRLHRD 192 (295)
T ss_pred CCeEEEEEEEEECCC
Confidence 12888888888764
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.29 E-value=1.3e-11 Score=120.63 Aligned_cols=141 Identities=17% Similarity=0.237 Sum_probs=115.2
Q ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHHHH
Q 048047 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLN 129 (466)
Q Consensus 50 ~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~v~ 129 (466)
...+++.|+|++|+++++++|++ ++|+.+.|+|.+......+.+ +++|.+++|+.++++. ..++||+|+.|.++.
T Consensus 33 ~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~~--gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~L~ 107 (297)
T PRK14653 33 PVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPMD--FVVVSTERLDDIFVDN--DKIICESGLSLKKLC 107 (297)
T ss_pred EEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCcc--EEEEEeCCcCceEEeC--CEEEEeCCCcHHHHH
Confidence 45589999999999999999999 999999999999765444333 8999998899998873 589999999999999
Q ss_pred HHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh------------------hHHHHHhhcCCC---ceEEEEEE
Q 048047 130 YRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY------------------DLFWAIRGGGGP---SFGIIISW 188 (466)
Q Consensus 130 ~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~------------------dLfwalrG~g~~---~fGvVt~~ 188 (466)
.++.++|..||..-.|..+|||-+=.+..|++|.-.... |+-|..|-..-. .+ |||++
T Consensus 108 ~~~~~~GL~GlE~l~gIPGTVGGAv~mNAGayG~ei~d~l~~V~~~d~g~v~~~~~~e~~f~YR~S~~~~~~~~-iI~~a 186 (297)
T PRK14653 108 LVAAKNGLSGFENAYGIPGSVGGAVYMNAGAYGWETAENIVEVVAYDGKKIIRLGKNEIKFSYRNSIFKEEKDL-IILRV 186 (297)
T ss_pred HHHHHCCCcchhhhcCCchhHHHHHHHhCccCchhhheeEEEEEEECCCEEEEEchhhccccCccccCCCCCcE-EEEEE
Confidence 999999988888888887787765566677787732222 888888876422 34 99999
Q ss_pred EEEEEecC
Q 048047 189 KIELVDVP 196 (466)
Q Consensus 189 ~~k~~p~~ 196 (466)
+||+.|..
T Consensus 187 ~f~L~~~~ 194 (297)
T PRK14653 187 TFKLKKGN 194 (297)
T ss_pred EEEEecCC
Confidence 99998753
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=7.4e-10 Score=106.44 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=124.6
Q ss_pred CCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHH
Q 048047 48 NQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 48 ~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~ 127 (466)
......++.|++.+|+.++++++.+.++|+.+-|+|.+..-...+. ++++|.+.+++.++++.+...+++|+|+.|.+
T Consensus 18 Gg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g~--~gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~~ 95 (291)
T COG0812 18 GGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGGI--GGVVIKLGKLNFIEIEGDDGLIEAGAGAPWHD 95 (291)
T ss_pred CcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCCC--ceEEEEcccccceeeeccCCeEEEccCCcHHH
Confidence 3356689999999999999999999999999999999954332223 48999999999999888877999999999999
Q ss_pred HHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------hHHHHHhhcCCCce-EEEEE
Q 048047 128 LNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------DLFWAIRGGGGPSF-GIIIS 187 (466)
Q Consensus 128 v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------dLfwalrG~g~~~f-GvVt~ 187 (466)
|.+.+.++|..||....|..+|||-+=++..|.+|.--... ||-|+.|-+.-..= .||++
T Consensus 96 l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~~el~f~YR~S~f~~~~~vvl~ 175 (291)
T COG0812 96 LVRFALENGLSGLEFLAGIPGSVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSAEELGFGYRTSPFKKEYLVVLS 175 (291)
T ss_pred HHHHHHHcCCcchhhhcCCCcccchhhhccCcccccchheeEEEEEEEcCCCCEEEEEHHHhCcccccCcCCCCCEEEEE
Confidence 99999999999999999999999988888888888744333 99999998874333 89999
Q ss_pred EEEEEEec
Q 048047 188 WKIELVDV 195 (466)
Q Consensus 188 ~~~k~~p~ 195 (466)
++||+.|-
T Consensus 176 v~f~L~~~ 183 (291)
T COG0812 176 VEFKLTKG 183 (291)
T ss_pred EEEEeCCC
Confidence 99999875
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.03 E-value=7.6e-10 Score=109.57 Aligned_cols=142 Identities=14% Similarity=0.040 Sum_probs=115.9
Q ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEc--CCC-CEEEEcCCCcHH
Q 048047 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVN--AEA-KTAWVQSGATVG 126 (466)
Q Consensus 50 ~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d--~~~-~~~~vg~G~~~~ 126 (466)
...+++.|+|++|++.++++|+++++|+.+-|+|.|..-.. .- .|++|.+. |+.++++ .+. ..+++|+|+.|.
T Consensus 20 ~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~~--~g~vI~~~-~~~~~~~~~~~~~~~v~a~AG~~~~ 95 (334)
T PRK00046 20 RARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-DF--DGTVLLNR-IKGIEVLSEDDDAWYLHVGAGENWH 95 (334)
T ss_pred EEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-CC--CEEEEEec-CCceEEEecCCCeEEEEEEcCCcHH
Confidence 45689999999999999999999999999999999965433 23 38888884 9999883 222 389999999999
Q ss_pred HHHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh--------------------hHHHHHhhcCCCc----e
Q 048047 127 QLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY--------------------DLFWAIRGGGGPS----F 182 (466)
Q Consensus 127 ~v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~--------------------dLfwalrG~g~~~----f 182 (466)
+|.+.+.++|..||....|..+|||-+=.+..|.+|.--... |+.|+.|-+.-.. -
T Consensus 96 ~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~~e~~f~YR~S~f~~~~~~~ 175 (334)
T PRK00046 96 DLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSAAECRFGYRDSIFKHEYPDR 175 (334)
T ss_pred HHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEHHHcCcccccccCCCCCcCC
Confidence 999999999999999999999999877777788887532222 9999999875321 1
Q ss_pred EEEEEEEEEEEec
Q 048047 183 GIIISWKIELVDV 195 (466)
Q Consensus 183 GvVt~~~~k~~p~ 195 (466)
-||++++|++.|-
T Consensus 176 ~iVl~a~f~L~~~ 188 (334)
T PRK00046 176 YAITAVGFRLPKQ 188 (334)
T ss_pred EEEEEEEEEecCC
Confidence 3999999999874
No 29
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.03 E-value=1e-09 Score=107.07 Aligned_cols=143 Identities=12% Similarity=0.116 Sum_probs=117.2
Q ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCccc-CCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHHH
Q 048047 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSI-SDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQL 128 (466)
Q Consensus 50 ~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~-~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~v 128 (466)
...+.+.|+|++|+++++++++++++|+.+-|+|.+..-...+ - ++++|.+.+|+.++++. ..++||+|+.|.++
T Consensus 32 ~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~--~g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~l 107 (302)
T PRK14650 32 ISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEI--DFPIIYTGHLNKIEIHD--NQIVAECGTNFEDL 107 (302)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCcc--ceEEEEECCcCcEEEeC--CEEEEEeCCcHHHH
Confidence 4557899999999999999999999999999999996433222 2 27888887799998864 47999999999999
Q ss_pred HHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh-------------------hHHHHHhhcCCCc-eEEEEEE
Q 048047 129 NYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY-------------------DLFWAIRGGGGPS-FGIIISW 188 (466)
Q Consensus 129 ~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~-------------------dLfwalrG~g~~~-fGvVt~~ 188 (466)
...+.++|..||..-.|..+|||-+=++-.|.+|.--... |+-|+.|-+.-.. =.||+++
T Consensus 108 ~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~~e~~f~YR~S~f~~~~~iIl~a 187 (302)
T PRK14650 108 CKFALQNELSGLEFIYGLPGTLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKKFKKEEFKYKISPFQNKNTFILKA 187 (302)
T ss_pred HHHHHHcCCchhhhhcCCCcchhHHHHhhCCccccchheeEEEEEEEECCCCEEEEEHHHcCcccccccCCCCCEEEEEE
Confidence 9999999999999999999999877777788887533322 9999999876321 1499999
Q ss_pred EEEEEecC
Q 048047 189 KIELVDVP 196 (466)
Q Consensus 189 ~~k~~p~~ 196 (466)
+|++.|..
T Consensus 188 ~f~L~~~~ 195 (302)
T PRK14650 188 TLNLKKGN 195 (302)
T ss_pred EEEEcCCC
Confidence 99998754
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.83 E-value=1.2e-08 Score=101.17 Aligned_cols=112 Identities=16% Similarity=0.200 Sum_probs=92.8
Q ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEc---CCCCEEEEcCCCcHH
Q 048047 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVN---AEAKTAWVQSGATVG 126 (466)
Q Consensus 50 ~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d---~~~~~~~vg~G~~~~ 126 (466)
...+.+.|+|.+|+++++++|+++++|+.+-|+|.|..-...+- .|++|.+++|+.+++. .+...++||+|+.|.
T Consensus 29 ~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g~--~G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~~ 106 (354)
T PRK14648 29 AAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEGV--PGLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPVA 106 (354)
T ss_pred EEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCCc--cEEEEEeCCcCceEEeeccCCcEEEEEEeCCcHH
Confidence 45579999999999999999999999999999999965433222 3899999779998862 222479999999999
Q ss_pred HHHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCC
Q 048047 127 QLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGA 163 (466)
Q Consensus 127 ~v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~ 163 (466)
+|...+.++|..||..-.|..++||-+=++..|.+|.
T Consensus 107 ~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGAyG~ 143 (354)
T PRK14648 107 ALLAFCAHHALRGLETFAGLPGSVGGAAYMNARCYGR 143 (354)
T ss_pred HHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCccce
Confidence 9999999999999999999999988766666666654
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.45 E-value=7.1e-07 Score=86.03 Aligned_cols=129 Identities=20% Similarity=0.197 Sum_probs=101.8
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCC-CcceEEcCCCCEEEEcCCCcHHHHHHH
Q 048047 53 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLIN-FSEISVNAEAKTAWVQSGATVGQLNYR 131 (466)
Q Consensus 53 ~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~-l~~v~~d~~~~~~~vg~G~~~~~v~~~ 131 (466)
+.+ |.+++|+++++ ++|+.+-|+|.|..-...+- .+++|-+++ ++.++++. ++|+|+.|.+|.++
T Consensus 23 ~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g~--~g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l~~~ 88 (273)
T PRK14651 23 LWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAGV--PERVIRLGGEFAEWDLDG-----WVGGGVPLPGLVRR 88 (273)
T ss_pred EEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCCc--ceEEEEECCcceeEeECC-----EEECCCcHHHHHHH
Confidence 455 99999999987 59999999999964332222 378888865 67776543 69999999999999
Q ss_pred HHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh------------------hHHHHHhhcCCCceEEEEEEEEEEE
Q 048047 132 IAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY------------------DLFWAIRGGGGPSFGIIISWKIELV 193 (466)
Q Consensus 132 l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~------------------dLfwalrG~g~~~fGvVt~~~~k~~ 193 (466)
+.++|..|+..-.|...|||-+=++..|.+|.--... |+.|+.|-+.-..=-||++++||+.
T Consensus 89 ~~~~gl~GlE~l~gIPGTVGGAv~mNaGayG~ei~d~l~~V~~~~~g~~~~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~ 168 (273)
T PRK14651 89 AARLGLSGLEGLVGIPAQVGGAVKMNAGTRFGEMADALHTVEIVHDGGFHQYSPDELGFGYRHSGLPPGHVVTRVRLKLR 168 (273)
T ss_pred HHHCCCcchhhhcCCCcchhhHHHhhCCccccChheeEEEEEEEECCCEEEEEHHHccccccccCCCCCEEEEEEEEEEC
Confidence 9999998999999999999877777778887533322 9999999876332139999999997
Q ss_pred ec
Q 048047 194 DV 195 (466)
Q Consensus 194 p~ 195 (466)
|.
T Consensus 169 ~~ 170 (273)
T PRK14651 169 PS 170 (273)
T ss_pred CC
Confidence 65
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=98.11 E-value=2.5e-06 Score=83.52 Aligned_cols=98 Identities=27% Similarity=0.413 Sum_probs=82.8
Q ss_pred EEEcCCCcc-eEEcCCCCEEEEcCCCcHHHHHHHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh---------
Q 048047 99 IVDLINFSE-ISVNAEAKTAWVQSGATVGQLNYRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY--------- 168 (466)
Q Consensus 99 ~idl~~l~~-v~~d~~~~~~~vg~G~~~~~v~~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~--------- 168 (466)
-|++..|.. +++|.++.+|+|+|+++++++.++|-+.|.. |++ ..--.+..+||++.|=|+-..|.+|
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~t-LaV-~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~a 182 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYT-LAV-LPELDDLTVGGLINGVGIESSSHKYGLFQHICTA 182 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCce-eee-ecccccceecceeeecccccccchhhhHHhhhhe
Confidence 355554444 5789999999999999999999999999976 433 4556677899999999988888887
Q ss_pred --------------------hHHHHHhhcCCCceEEEEEEEEEEEecCcee
Q 048047 169 --------------------DLFWAIRGGGGPSFGIIISWKIELVDVPSTV 199 (466)
Q Consensus 169 --------------------dLfwalrG~g~~~fGvVt~~~~k~~p~~~~~ 199 (466)
|||.|+-.+- |++|..+.+|+|+.|..+.+
T Consensus 183 YEvVladGelv~~t~dne~sdLfyaiPWSq-GTlgfLVaatiriIkvK~Yv 232 (543)
T KOG1262|consen 183 YEVVLADGELVRVTPDNEHSDLFYAIPWSQ-GTLGFLVAATIRIIKVKKYV 232 (543)
T ss_pred eEEEecCCeEEEecCCcccCceEEEccccc-CchheeeeeEEEEEeccceE
Confidence 9999999999 89999999999999998754
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.02 E-value=1.4e-05 Score=76.30 Aligned_cols=128 Identities=11% Similarity=0.045 Sum_probs=99.0
Q ss_pred CCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHHHHH
Q 048047 51 PPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLNY 130 (466)
Q Consensus 51 p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~v~~ 130 (466)
..+.+.|++.+ + ++|+.+-|+|.|..-...+. ++++ -++.|+.++++. ..+++++|+.|.++.+
T Consensus 19 A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g~--~~vv-~~~~~~~~~~~~--~~v~~~AG~~l~~l~~ 82 (257)
T PRK13904 19 LEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNPK--NLAI-LGKNFDYIKIDG--ECLEIGGATKSGKIFN 82 (257)
T ss_pred EEEEEEechhh-h----------CCCeEEEeceeEEEEecCCc--cEEE-EccCcCeEEEeC--CEEEEEcCCcHHHHHH
Confidence 34566777776 5 89999999999964322222 2454 356789998854 4799999999999999
Q ss_pred HHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh--------------hHHHHHhhcCCCceEEEEEEEEEEEecC
Q 048047 131 RIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY--------------DLFWAIRGGGGPSFGIIISWKIELVDVP 196 (466)
Q Consensus 131 ~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~--------------dLfwalrG~g~~~fGvVt~~~~k~~p~~ 196 (466)
.+.++|..||....|...|||-+=++..|.+|.--... |+.|+.|-..- . .||++++||+.|..
T Consensus 83 ~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa~g~ei~d~l~~V~~~~~~~~~~e~~f~YR~S~~-~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 83 YAKKNNLGGFEFLGKLPGTLGGLVKMNAGLKEYEISNNLESICTNGGWIEKEDIGFGYRSSGI-N-GVILEARFKKTHGF 160 (257)
T ss_pred HHHHCCCchhhhhcCCCccHHHHHHhcCCcCccchheeEEEEEEEeeEEeHHHCcccccCcCC-C-cEEEEEEEEECCCC
Confidence 99999999999999999998876666677777533322 99999998763 2 49999999998754
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=94.23 E-value=0.074 Score=48.00 Aligned_cols=134 Identities=20% Similarity=0.210 Sum_probs=77.9
Q ss_pred CCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCC-CcccCCCCeEEEEcCCCcc---eEEcCCCCEEEEcCCCcHH
Q 048047 51 PPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSE---ISVNAEAKTAWVQSGATVG 126 (466)
Q Consensus 51 p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g-~s~~~~~~~~~idl~~l~~---v~~d~~~~~~~vg~G~~~~ 126 (466)
+...++|+|.+|..++++ .+-...+.+||++... ..........+||++++.+ |+.+ .+.++||++++..
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~--~~~l~IGA~vtl~ 75 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISED--DGGLRIGAAVTLS 75 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEE--TSEEEEETTSBHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEe--ccEEEECCCccHH
Confidence 346789999999888877 3335778889988421 1111001258899998755 5554 6799999999999
Q ss_pred HHHHH--HHHhCCCceeecCCCCC------CceEeeeccCCCcCCccchhhHHHHHhhcCCCceEEEEEEEEEEEecCc
Q 048047 127 QLNYR--IAEKSQNLLAFPVGTCP------GVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISWKIELVDVPS 197 (466)
Q Consensus 127 ~v~~~--l~~~g~~~l~~~~G~~~------~vg~gG~~lgGG~g~~s~~~dLfwalrG~g~~~fGvVt~~~~k~~p~~~ 197 (466)
++.+. +.++-.. |.-...... ...+||.+..+... .|+.=+|-.-+ ...-|+..-.-|..|..+
T Consensus 76 ~l~~~~~~~~~~p~-L~~~~~~ias~~IRn~aTiGGNl~~~~~~-----sD~~~~Llal~-A~v~i~~~~g~r~~~~~~ 147 (171)
T PF00941_consen 76 ELEESPLIQQYFPA-LAQAARRIASPQIRNRATIGGNLCNASPA-----SDLAPALLALD-ARVEIASPDGTRTVPLED 147 (171)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCTSS-HHHHTT-BHHHHHHHTBTT------SHHHHHHHTT--EEEEEETTEEEEEEGGG
T ss_pred HHhhcchhhhhHHH-HHHHHHHhCCHhHeeeeeeccccccCccc-----ccHHHHHHHhC-cEEEEEcCCeeEEEEHHH
Confidence 99875 1111000 111111222 22457776443321 29999998888 666666555556666654
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=93.43 E-value=0.23 Score=47.93 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=50.9
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHHHHHHH
Q 048047 53 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEI-SVNAEAKTAWVQSGATVGQLNYR 131 (466)
Q Consensus 53 ~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~~v~~~ 131 (466)
-...|+|.+|...+++ +++=...+.+||++....- ......++||++++ ++ .+..+.+.++||++++..++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 3578999999877654 4433456789999963211 11123688999975 43 23445679999999999999863
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=92.19 E-value=0.44 Score=46.02 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=48.6
Q ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEeccccCCC-CCcccCCCCeEEEEcCCC--cceEEcCCCCEEEEcCCCcHHHHHH
Q 048047 54 IITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLE-GLSSISDVPFIIVDLINF--SEISVNAEAKTAWVQSGATVGQLNY 130 (466)
Q Consensus 54 vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~-g~s~~~~~~~~~idl~~l--~~v~~d~~~~~~~vg~G~~~~~v~~ 130 (466)
..+|+|.+|..++++ +++-.-.+.+||++.. ..... ...++||++++ +.|+. +.+.++||+.++..++.+
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~--~~~~lIdl~~ieL~~I~~--~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRT--DKKVAISLDKLALDKIEL--QGGALHIGAMCHLQSLID 76 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhccc--CCCEEEEcCCCCCCcEEe--cCCEEEEEeCCcHHHHHh
Confidence 568999999776544 4433346689999974 32211 12578999876 44444 456899999999999875
No 37
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=91.54 E-value=0.088 Score=51.04 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=24.7
Q ss_pred hhhhhhhccccHHHHHHhhhccCCCCCcccCCCC
Q 048047 423 GVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSI 456 (466)
Q Consensus 423 ~~~~~~yyg~n~~RL~~IK~kYDP~nvF~~~~~I 456 (466)
+.|. .-||..++|+++.|++|||.+++.--|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 5796 56799999999999999999999888776
No 38
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=90.72 E-value=0.44 Score=45.36 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=22.4
Q ss_pred hhhhhccccHHHHHHhhhccCCCCCcccC
Q 048047 425 WGKKYFKNNFYRLVHVKTMVDPENFFRNE 453 (466)
Q Consensus 425 ~~~~yyg~n~~RL~~IK~kYDP~nvF~~~ 453 (466)
....| .++.+.++||+++||+++|.+.
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCH
Confidence 33444 5899999999999999999865
No 39
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=90.70 E-value=0.67 Score=48.75 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=54.7
Q ss_pred CCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCC-CCcccCCCCeEEEEcCCCcceE-EcCCCCEEEEcCCCcHHHH
Q 048047 51 PPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLE-GLSSISDVPFIIVDLINFSEIS-VNAEAKTAWVQSGATVGQL 128 (466)
Q Consensus 51 p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~-g~s~~~~~~~~~idl~~l~~v~-~d~~~~~~~vg~G~~~~~v 128 (466)
..-+++|+|.+|+.++++ ++. ...+.+||++.. ...........+||++++.++. +..+...++||++++..++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~---~~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKA---AHP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHh---hCC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 446899999999887765 332 356788999962 2111111236889999876532 3334568999999999999
Q ss_pred HHHHHHh
Q 048047 129 NYRIAEK 135 (466)
Q Consensus 129 ~~~l~~~ 135 (466)
.+.+.++
T Consensus 268 ~~~l~~~ 274 (467)
T TIGR02963 268 YAALAKR 274 (467)
T ss_pred HHHHHHH
Confidence 8765543
No 40
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=89.80 E-value=0.58 Score=46.63 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=48.7
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCC-CCcccCCCCeEEEEcCCCcceE-EcCCCCEEEEcCCCcHHHHHH
Q 048047 53 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLE-GLSSISDVPFIIVDLINFSEIS-VNAEAKTAWVQSGATVGQLNY 130 (466)
Q Consensus 53 ~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~-g~s~~~~~~~~~idl~~l~~v~-~d~~~~~~~vg~G~~~~~v~~ 130 (466)
-.+.|+|.+|..++++ +++ .-.+.+||++.. ..-........+||++++.++. |..+.+.++||++++..++.+
T Consensus 6 ~~~~P~sl~eA~~ll~---~~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALA---AHP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHh---hCC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 5788999998776654 332 345789999852 1111111236889999765432 333456899999999999854
No 41
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=88.79 E-value=0.71 Score=45.45 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=50.2
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCC-CCcccCCCCeEEEEcCCCcceE-Ec-CCCCEEEEcCCCcHHHHH
Q 048047 53 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLE-GLSSISDVPFIIVDLINFSEIS-VN-AEAKTAWVQSGATVGQLN 129 (466)
Q Consensus 53 ~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~-g~s~~~~~~~~~idl~~l~~v~-~d-~~~~~~~vg~G~~~~~v~ 129 (466)
-.+.|+|.+|..++++ ++. ...+.+||++.. ...........+||+++++++. |. .+.+.++||+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~---~~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLA---DNP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHH---hCC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 5788999999877665 332 356789999952 2111111236889999876532 33 234579999999999997
Q ss_pred H
Q 048047 130 Y 130 (466)
Q Consensus 130 ~ 130 (466)
+
T Consensus 82 ~ 82 (291)
T PRK09971 82 E 82 (291)
T ss_pred c
Confidence 5
No 42
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=87.44 E-value=0.42 Score=46.10 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=19.2
Q ss_pred hhhhhhccccHHHHHHhhhccCCCCCcccC
Q 048047 424 VWGKKYFKNNFYRLVHVKTMVDPENFFRNE 453 (466)
Q Consensus 424 ~~~~~yyg~n~~RL~~IK~kYDP~nvF~~~ 453 (466)
...+.| .++++..++|+++||+|+|.+.
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 344444 7999999999999999999764
No 43
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=85.99 E-value=1.2 Score=43.22 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=47.0
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEeccccCCC-CCccc-CCCCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHHHHHH
Q 048047 57 PFHVSEIQAAIKCSKKSGLQIRVRSGGHDLE-GLSSI-SDVPFIIVDLINFSEI-SVNAEAKTAWVQSGATVGQLNY 130 (466)
Q Consensus 57 p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~-g~s~~-~~~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~~v~~ 130 (466)
|+|.+|+.++++ ++. ...+.+||++.. ..... -.....+||++++.++ .|..+.+.++||+++++.++.+
T Consensus 1 P~sl~ea~~ll~---~~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~ 73 (264)
T TIGR03199 1 PAALDEAWSLLE---KAP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRK 73 (264)
T ss_pred CCCHHHHHHHHH---hCC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhh
Confidence 678888777665 232 356788999852 21111 0113678999987664 2445667999999999999964
No 44
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=84.17 E-value=2 Score=40.41 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=19.5
Q ss_pred hhhhhccc-cHHHHHHhhhccCCCCCcc
Q 048047 425 WGKKYFKN-NFYRLVHVKTMVDPENFFR 451 (466)
Q Consensus 425 ~~~~yyg~-n~~RL~~IK~kYDP~nvF~ 451 (466)
|-...+++ -+.-+++||+.+||+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 217 YLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 33344554 6999999999999999986
No 45
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=81.46 E-value=3.2 Score=43.47 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=73.2
Q ss_pred hhHHHHHhhcCCCCCceEEcCCCCCchHHhhhcccccccCCCCCCCCCEEEecCCHHHHHHHHHHHHhc-CCcEEE----
Q 048047 5 ENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKS-GLQIRV---- 79 (466)
Q Consensus 5 ~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~-~~~~~v---- 79 (466)
+.|.+...+...+|.+.|+.-+=|+-+.+.. ++..+ ...-.|..++.|.|.++|..+|++|+++ ..|+.+
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~E-lI~~L----~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVE-LIEEL----GDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHH-HHHHH----hhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 4577888888899999999999899888754 22111 2334788999999999999999999997 456555
Q ss_pred -eccccC-CCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHH-HHHHHH
Q 048047 80 -RSGGHD-LEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVG-QLNYRI 132 (466)
Q Consensus 80 -r~gGh~-~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~-~v~~~l 132 (466)
|+|||. |... ++ .++.--|.+++. ++=++.||+|.=.- +-+.+|
T Consensus 186 GraGGHHSweDl---d~--llL~tYs~lR~~----~NIvl~vGgGiGtp~~aa~YL 232 (717)
T COG4981 186 GRAGGHHSWEDL---DD--LLLATYSELRSR----DNIVLCVGGGIGTPDDAAPYL 232 (717)
T ss_pred CccCCccchhhc---cc--HHHHHHHHHhcC----CCEEEEecCCcCChhhccccc
Confidence 445554 5543 11 222222233321 22266778876443 334443
No 46
>PLN02906 xanthine dehydrogenase
Probab=77.60 E-value=4.5 Score=48.16 Aligned_cols=80 Identities=5% Similarity=0.069 Sum_probs=54.1
Q ss_pred CEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCC-CcccCCCCeEEEEcCCCcceE-EcCCCCEEEEcCCCcHHHHH
Q 048047 52 PFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSEIS-VNAEAKTAWVQSGATVGQLN 129 (466)
Q Consensus 52 ~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g-~s~~~~~~~~~idl~~l~~v~-~d~~~~~~~vg~G~~~~~v~ 129 (466)
.-.++|+|.+|+.++++ ++. .-.+.+||++... .........++||++++..+. |..+...++||++++..++.
T Consensus 229 ~~~~~P~tl~ea~~ll~---~~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKA---EYP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHH---hCC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 35889999999887654 232 2456789999632 111111236889999876542 44455689999999999999
Q ss_pred HHHHHh
Q 048047 130 YRIAEK 135 (466)
Q Consensus 130 ~~l~~~ 135 (466)
+.|.+.
T Consensus 305 ~~l~~~ 310 (1319)
T PLN02906 305 NLFRKV 310 (1319)
T ss_pred HHHHHH
Confidence 875543
No 47
>PLN00192 aldehyde oxidase
Probab=74.29 E-value=7.4 Score=46.47 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=55.2
Q ss_pred CCEEEecCCHHHHHHHHHHHHhc---CCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceE-EcCCCCEEEEcCCCcHH
Q 048047 51 PPFIITPFHVSEIQAAIKCSKKS---GLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEIS-VNAEAKTAWVQSGATVG 126 (466)
Q Consensus 51 p~~vv~p~~~~dV~~~v~~a~~~---~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~-~d~~~~~~~vg~G~~~~ 126 (466)
..-.++|+|.+|+.++++ ++ +-.-.+..||++..-.-. .....++||++++.++. |..+...++||+++++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~---~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~ 308 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLE---SNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTIS 308 (1344)
T ss_pred CceEECcCCHHHHHHHHH---hCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHH
Confidence 446889999999887654 33 123566789999632211 21236889999866542 34455789999999999
Q ss_pred HHHHHHHHh
Q 048047 127 QLNYRIAEK 135 (466)
Q Consensus 127 ~v~~~l~~~ 135 (466)
++.+.+..+
T Consensus 309 el~~~l~~~ 317 (1344)
T PLN00192 309 KAIEALREE 317 (1344)
T ss_pred HHHHHHHhh
Confidence 998766543
No 48
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=74.21 E-value=7.3 Score=46.48 Aligned_cols=78 Identities=21% Similarity=0.188 Sum_probs=53.5
Q ss_pred CEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCC-CcccCCCCeEEEEcCCCcceE-EcCCCCEEEEcCCCcHHHHH
Q 048047 52 PFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEG-LSSISDVPFIIVDLINFSEIS-VNAEAKTAWVQSGATVGQLN 129 (466)
Q Consensus 52 ~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g-~s~~~~~~~~~idl~~l~~v~-~d~~~~~~~vg~G~~~~~v~ 129 (466)
.-.+.|+|.+|+.++++ ++. .-.+.+||++..- ..........+||++++.++. +..+...++||++++..++.
T Consensus 237 ~~~~~P~tl~ea~~ll~---~~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKF---KYP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHH---hCC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 45889999999887755 232 3456789999632 211111125789999866642 44456789999999999998
Q ss_pred HHHH
Q 048047 130 YRIA 133 (466)
Q Consensus 130 ~~l~ 133 (466)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 49
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=71.70 E-value=12 Score=36.66 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCC-cccCCCCeEEEEcCCCc-c-eEEcCCCCEEEEcCCCcHHH
Q 048047 51 PPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGL-SSISDVPFIIVDLINFS-E-ISVNAEAKTAWVQSGATVGQ 127 (466)
Q Consensus 51 p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~-s~~~~~~~~~idl~~l~-~-v~~d~~~~~~~vg~G~~~~~ 127 (466)
+.-+.+|.|.+|-.. ..++++ .-.+-+|||+.... -........+||++++. . ..+..+++.++||+-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~---ll~~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALN---LLARAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHH---HHHhCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 456788988888554 445666 77888999996421 11111135789999985 3 23445677899999999999
Q ss_pred HHH
Q 048047 128 LNY 130 (466)
Q Consensus 128 v~~ 130 (466)
+.+
T Consensus 79 i~~ 81 (284)
T COG1319 79 IAR 81 (284)
T ss_pred HHh
Confidence 964
No 50
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=64.43 E-value=77 Score=32.66 Aligned_cols=92 Identities=24% Similarity=0.276 Sum_probs=62.5
Q ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHHHHH
Q 048047 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVGQLN 129 (466)
Q Consensus 50 ~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~~v~ 129 (466)
....|+.|+-+|-...+.+.|+++|++++-||.|--. . .+. +-++.| ++|++.
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~-~---~~t-dV~l~D----------------------tmGEL~ 312 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPP-F---SDT-DVLLGD----------------------TMGELG 312 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCC-C---CCC-cEEEEe----------------------cHhHHH
Confidence 4668999999999999999999999999999998211 1 111 134433 466766
Q ss_pred HHHHHhCCCceeecCCCCCCceEeeeccCCCcCCccchh---------------hHHHHHhhcCC
Q 048047 130 YRIAEKSQNLLAFPVGTCPGVAVGGHFSGGGYGALLRKY---------------DLFWAIRGGGG 179 (466)
Q Consensus 130 ~~l~~~g~~~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~---------------dLfwalrG~g~ 179 (466)
....-.. .++++|+--. -|||.++-..+ |++-.+.-+|+
T Consensus 313 l~y~~ad---iAFVGGSlv~--------~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga 366 (419)
T COG1519 313 LLYGIAD---IAFVGGSLVP--------IGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGA 366 (419)
T ss_pred HHHhhcc---EEEECCcccC--------CCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCC
Confidence 5433222 4666655433 35565554444 99999999984
No 51
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=62.91 E-value=26 Score=33.85 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=62.1
Q ss_pred hhhHHHHHhhcCCCCCceEEcCCCCCchHHhhhcccccccCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccc
Q 048047 4 HENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGG 83 (466)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gG 83 (466)
.+.|++.|.. ...|++|+-++-+.+.. . ...++.+|+.++-+...+.|.+-++.=||
T Consensus 122 ~~~l~~~LlP-----~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGG 178 (263)
T COG0351 122 VEALREELLP-----LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGG 178 (263)
T ss_pred HHHHHHHhhc-----cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 3445555555 34788999888776642 1 26789999999999999999999999999
Q ss_pred cCCCCCcccCCCCeEEEEcCCCcce---EEcCCCCEEEEcCCCcHHHHHHH
Q 048047 84 HDLEGLSSISDVPFIIVDLINFSEI---SVNAEAKTAWVQSGATVGQLNYR 131 (466)
Q Consensus 84 h~~~g~s~~~~~~~~~idl~~l~~v---~~d~~~~~~~vg~G~~~~~v~~~ 131 (466)
|... ... -++.|-..+..+ .++.. =+=|.||++.-...+
T Consensus 179 H~~~---~~~---D~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa 220 (263)
T COG0351 179 HLEG---EAV---DVLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAA 220 (263)
T ss_pred CCCC---Cce---eEEEcCCceEEEeccccCCC---CCCCccHHHHHHHHH
Confidence 9865 112 244444422211 12221 246889998755443
No 52
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=62.21 E-value=17 Score=39.19 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=27.6
Q ss_pred hhhhhhhcc-ccHHHHHHhhhccCCCCCcccCCCCC
Q 048047 423 GVWGKKYFK-NNFYRLVHVKTMVDPENFFRNEQSIP 457 (466)
Q Consensus 423 ~~~~~~yyg-~n~~RL~~IK~kYDP~nvF~~~~~I~ 457 (466)
..|-..+|| +.++-+++||+.+||+|+++--.=|+
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 356667777 57999999999999999998654444
No 53
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=61.31 E-value=13 Score=39.44 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=25.2
Q ss_pred hhhhhhcc-ccHHHHHHhhhccCCCCCcccCCCC
Q 048047 424 VWGKKYFK-NNFYRLVHVKTMVDPENFFRNEQSI 456 (466)
Q Consensus 424 ~~~~~yyg-~n~~RL~~IK~kYDP~nvF~~~~~I 456 (466)
.|-...|| +.+.-+++||+.+||+|+++--.-|
T Consensus 439 ~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 439 NQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 34445556 6799999999999999999855444
No 54
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=60.08 E-value=10 Score=34.52 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=46.2
Q ss_pred hhhHHHHHhhcCCCCCceEEcCCCCCchHHhhhcccccccCCCCCCCCCEEEec--CCHHHHHHHHHHHHhcCCc
Q 048047 4 HENFLKCLSLQSDTISKVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITP--FHVSEIQAAIKCSKKSGLQ 76 (466)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p--~~~~dV~~~v~~a~~~~~~ 76 (466)
-+.||+||.+.. -|.|+.-+|..-..+.--| .||......+-....+| .+-.-|.+||+..++|++|
T Consensus 150 EqgLRdCCRsIR---IGKILi~sd~~t~~akV~Y---ArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp 218 (267)
T KOG1017|consen 150 EQGLRDCCRSIR---IGKILIGSDQNTHEAKVLY---ARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVP 218 (267)
T ss_pred HHHHHHHHHHhe---eeeEEeccccccceeeEEE---EecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCC
Confidence 367999999987 5677776665444433223 36665554555566666 4667899999999999976
No 55
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=58.19 E-value=6 Score=40.95 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=22.7
Q ss_pred hhhhhhcc-ccHHHHHHhhhccCCCCCcc
Q 048047 424 VWGKKYFK-NNFYRLVHVKTMVDPENFFR 451 (466)
Q Consensus 424 ~~~~~yyg-~n~~RL~~IK~kYDP~nvF~ 451 (466)
.|....|+ +.++-|++||+.+||+|+++
T Consensus 382 ~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 382 EFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 34555556 57999999999999999986
No 56
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=56.14 E-value=6 Score=40.68 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=19.0
Q ss_pred ccHHHHHHhhhccCCCCCcc
Q 048047 432 NNFYRLVHVKTMVDPENFFR 451 (466)
Q Consensus 432 ~n~~RL~~IK~kYDP~nvF~ 451 (466)
.|+++..+||+++||+++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 69999999999999999994
No 57
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=54.74 E-value=25 Score=35.42 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=52.2
Q ss_pred CEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCC-CCeEEEEcCCCcce-EEcCCCCEEEEcCCCcHHHHH
Q 048047 52 PFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISD-VPFIIVDLINFSEI-SVNAEAKTAWVQSGATVGQLN 129 (466)
Q Consensus 52 ~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~-~~~~~idl~~l~~v-~~d~~~~~~~vg~G~~~~~v~ 129 (466)
...+.|.+.+|...++. .+-..++..|++++.-+.+..- +=..+|-+.++..+ +|+.+.+.++||+|++..+.+
T Consensus 204 ~r~~~P~~l~D~a~l~a----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~ 279 (493)
T COG4630 204 DRFIVPATLADFADLLA----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAY 279 (493)
T ss_pred ceeEeeccHHHHHHHHh----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHH
Confidence 35788999999887643 3334555668877643322110 01234555665553 355566899999999999999
Q ss_pred HHHHHh
Q 048047 130 YRIAEK 135 (466)
Q Consensus 130 ~~l~~~ 135 (466)
..|..+
T Consensus 280 ~~la~~ 285 (493)
T COG4630 280 RALAGR 285 (493)
T ss_pred HHHHhh
Confidence 998765
No 58
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=46.94 E-value=1.2e+02 Score=32.88 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.1
Q ss_pred hhhhhhccccHHHHHHhhhccCCCCCcccC
Q 048047 424 VWGKKYFKNNFYRLVHVKTMVDPENFFRNE 453 (466)
Q Consensus 424 ~~~~~yyg~n~~RL~~IK~kYDP~nvF~~~ 453 (466)
.+.+.| . +.+.++|++++||+++|.+.
T Consensus 538 ~L~~~Y-P--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 538 RLRKRF-P--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred HHHhhC-C--HHHHHHHHHHhCCCCccCCH
Confidence 444444 5 99999999999999999865
No 59
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=39.51 E-value=17 Score=36.76 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=18.4
Q ss_pred ccc-HHHHHHhhhccCCCCCccc
Q 048047 431 KNN-FYRLVHVKTMVDPENFFRN 452 (466)
Q Consensus 431 g~n-~~RL~~IK~kYDP~nvF~~ 452 (466)
..+ .+-.++||+++||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 345 6888999999999999973
No 60
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.94 E-value=18 Score=35.89 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=38.9
Q ss_pred ceEEcCCCCCchHHhhhcccccccCCCCCCCCCEEEec------CCHHHHHHHHHHHHhc------CCcEEEecccc
Q 048047 20 KVIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITP------FHVSEIQAAIKCSKKS------GLQIRVRSGGH 84 (466)
Q Consensus 20 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p------~~~~dV~~~v~~a~~~------~~~~~vr~gGh 84 (466)
+.|..|....|.+.+.. -+.||.. ...+++| ..+++|..+++.+.+. .+=+.+||||-
T Consensus 18 ~vITs~~gAa~~D~~~~--~~~r~~~-----~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRT--LKRRNPI-----VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHH--HHHhCCC-----cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 34555777888888763 2446653 3345555 4578999999999864 46777788873
No 61
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=34.28 E-value=58 Score=32.24 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHH--hcCCcEEEeccccC-CCC---CcccCCCCeEEEEcCCCcc----------eEEcCCCCEEEEcCCC
Q 048047 60 VSEIQAAIKCSK--KSGLQIRVRSGGHD-LEG---LSSISDVPFIIVDLINFSE----------ISVNAEAKTAWVQSGA 123 (466)
Q Consensus 60 ~~dV~~~v~~a~--~~~~~~~vr~gGh~-~~g---~s~~~~~~~~~idl~~l~~----------v~~d~~~~~~~vg~G~ 123 (466)
.++|.+-+++.- .++.+|++-|.||+ +.. .-.-++|.-++.-...+.+ .++|. -++..|.++
T Consensus 52 m~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~--v~~~~G~~~ 129 (385)
T KOG2862|consen 52 MDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDV--VEADIGQAV 129 (385)
T ss_pred HHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeE--EecCcccCc
Confidence 356666666543 46899999999999 432 1122333344444433321 22222 256689999
Q ss_pred cHHHHHHHHHHhCCCceeecCCCCCC
Q 048047 124 TVGQLNYRIAEKSQNLLAFPVGTCPG 149 (466)
Q Consensus 124 ~~~~v~~~l~~~g~~~l~~~~G~~~~ 149 (466)
..+++.++|..|....+++.+|.+++
T Consensus 130 ~le~i~~~lsqh~p~~vfv~hgdsST 155 (385)
T KOG2862|consen 130 PLEEITEKLSQHKPKAVFVTHGDSST 155 (385)
T ss_pred cHHHHHHHHHhcCCceEEEEecCccc
Confidence 99999999999987656667777665
No 62
>PRK06186 hypothetical protein; Validated
Probab=34.07 E-value=34 Score=32.36 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEecccc
Q 048047 58 FHVSEIQAAIKCSKKSGLQIRVRSGGH 84 (466)
Q Consensus 58 ~~~~dV~~~v~~a~~~~~~~~vr~gGh 84 (466)
+..+--..++++|+++++||.=.+-|=
T Consensus 66 rg~~Gki~ai~~Are~~iP~LGIClGm 92 (229)
T PRK06186 66 RNDDGALTAIRFARENGIPFLGTCGGF 92 (229)
T ss_pred ccHhHHHHHHHHHHHcCCCeEeechhh
Confidence 678889999999999999999777763
No 63
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=32.89 E-value=37 Score=35.47 Aligned_cols=31 Identities=10% Similarity=0.338 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEEe--ccccCCC
Q 048047 57 PFHVSEIQAAIKCSKKSGLQIRVR--SGGHDLE 87 (466)
Q Consensus 57 p~~~~dV~~~v~~a~~~~~~~~vr--~gGh~~~ 87 (466)
.-|.+||+++|+||+-+||+|.+- .-||.-+
T Consensus 246 vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 246 VYTREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred eecHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 347799999999999999999874 5777643
No 64
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.91 E-value=28 Score=36.26 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=39.7
Q ss_pred ceEEcCCCCCchHHhhhcccccccCC-CCCCCCCEEEecCCHHHHHHHHHHHHhc---CCcEEEeccc
Q 048047 20 KVIYTQNNSSYSSVLKSSIQNLVFST-PTNQKPPFIITPFHVSEIQAAIKCSKKS---GLQIRVRSGG 83 (466)
Q Consensus 20 ~~v~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~p~~~~dV~~~v~~a~~~---~~~~~vr~gG 83 (466)
+.|..|....+.+.+.. -+.||.. .....|+.|==...+.+|.++|+.+.+. ++-+.+||||
T Consensus 133 ~vits~~~aa~~D~~~~--~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGG 198 (432)
T TIGR00237 133 GVITSQTGAALADILHI--LKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGG 198 (432)
T ss_pred EEEeCCccHHHHHHHHH--HHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCC
Confidence 45555777788888763 3567753 2223444444445678999999888763 4566778877
No 65
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=29.80 E-value=1e+02 Score=30.18 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=37.3
Q ss_pred EEcCCCCCchHHhhhcccccccCCCCCCCCC-EEEecCCHHHHHHHHHHHHhcCCcEEEec
Q 048047 22 IYTQNNSSYSSVLKSSIQNLVFSTPTNQKPP-FIITPFHVSEIQAAIKCSKKSGLQIRVRS 81 (466)
Q Consensus 22 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~p~~~~dV~~~v~~a~~~~~~~~vr~ 81 (466)
|=.|.+-+|.+++++ +|. -.|....++||-+++.++.+.++++++.|
T Consensus 242 iP~p~~vd~~~wlk~-------------ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~G 289 (324)
T COG2144 242 IPYPADVDFRQWLKR-------------YPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIG 289 (324)
T ss_pred cCCcccccHHHHHHh-------------CCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEE
Confidence 446777888877653 455 67777788899999999999999999865
No 66
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=28.71 E-value=30 Score=36.10 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=38.2
Q ss_pred eEEcCCCCCchHHhhhcccccccCCCCCCCCCEEEecC------CHHHHHHHHHHHHhc--CCcEEEeccc
Q 048047 21 VIYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPF------HVSEIQAAIKCSKKS--GLQIRVRSGG 83 (466)
Q Consensus 21 ~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~------~~~dV~~~v~~a~~~--~~~~~vr~gG 83 (466)
.|..|....+.+.+.. -+.||.. -..+++|. .+.+|.++++.+.+. ++=+.+||||
T Consensus 140 viTs~~gAa~~D~~~~--~~~r~p~-----~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 140 VITSPTGAAIRDILTV--LRRRFPL-----VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEeCCccHHHHHHHHH--HHhcCCC-----CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 4455667778888753 3567753 23455554 458999999988874 6777888888
No 67
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=27.87 E-value=30 Score=37.11 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=18.2
Q ss_pred HHHHHHhhhccCCCCCcccC
Q 048047 434 FYRLVHVKTMVDPENFFRNE 453 (466)
Q Consensus 434 ~~RL~~IK~kYDP~nvF~~~ 453 (466)
+.+-++|++++||+++|.+.
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78889999999999999875
No 68
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=27.25 E-value=89 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=23.0
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcc
Q 048047 53 FIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSE 107 (466)
Q Consensus 53 ~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~ 107 (466)
.++.|++-+|+..++...++.+ .+++||+.|+.
T Consensus 2 ~v~~p~~~~D~~~i~~~l~~g~----------------------~Vivnl~~l~~ 34 (73)
T PF04472_consen 2 VVFEPKSFEDAREIVDALREGK----------------------IVIVNLENLDD 34 (73)
T ss_dssp EEEE-SSGGGHHHHHHHHHTT------------------------EEEE-TTS-H
T ss_pred EEEeeCCHHHHHHHHHHHHcCC----------------------EEEEECCCCCH
Confidence 5789999999999988776633 57888888865
No 69
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=25.80 E-value=71 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCcEEEeccccCCC
Q 048047 63 IQAAIKCSKKSGLQIRVRSGGHDLE 87 (466)
Q Consensus 63 V~~~v~~a~~~~~~~~vr~gGh~~~ 87 (466)
....++|++++++||.|.|+|-.+.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 3457899999999999999999864
No 70
>PF08741 YwhD: YwhD family; InterPro: IPR014852 The members of this entry are currently uncharacterised. They are around 170 amino acids in length.
Probab=25.07 E-value=1.6e+02 Score=25.88 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=33.8
Q ss_pred cCCcEEEecc----ccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHH
Q 048047 73 SGLQIRVRSG----GHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVG 126 (466)
Q Consensus 73 ~~~~~~vr~g----Gh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~ 126 (466)
.++.|.|.+. ||.-.| .=.|||.++.-|-||.+.+.+.|.-|+.-.
T Consensus 2 k~~~fnIi~~d~tdgH~G~g--------~Gsi~L~nvspViID~e~~ea~vD~GAmHA 51 (163)
T PF08741_consen 2 KKIGFNIIKNDSTDGHGGFG--------AGSISLNNVSPVIIDVEEGEAFVDMGAMHA 51 (163)
T ss_pred CCcceEEecCCCCCCCCCcc--------eeeEeccccccEEEecCCCEEEEecccccc
Confidence 4566777654 665322 124899999999999999999998887653
No 71
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.69 E-value=40 Score=34.92 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=37.4
Q ss_pred ceEEcCCCCCchHHhhhcccccccCC-CCCCCCCEEEecCCHHHHHHHHHHHHhcC-CcE--EEeccc
Q 048047 20 KVIYTQNNSSYSSVLKSSIQNLVFST-PTNQKPPFIITPFHVSEIQAAIKCSKKSG-LQI--RVRSGG 83 (466)
Q Consensus 20 ~~v~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~p~~~~dV~~~v~~a~~~~-~~~--~vr~gG 83 (466)
|.|..|......+.++. -..||.. .....|..|==...+++|+++|+.|++.+ +-+ ..||||
T Consensus 139 GVITS~tgAairDIl~~--~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 139 GVITSPTGAALRDILHT--LSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred EEEcCCchHHHHHHHHH--HHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 44555666667776653 3457763 22223444444456789999999999876 444 445555
No 72
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=22.87 E-value=52 Score=26.24 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=9.4
Q ss_pred CceEEEEEEEE
Q 048047 180 PSFGIIISWKI 190 (466)
Q Consensus 180 ~~fGvVt~~~~ 190 (466)
.+|||||+||-
T Consensus 68 ~~fgvItsFTa 78 (109)
T PF04753_consen 68 KYFGVITSFTA 78 (109)
T ss_pred cceeeEEeeeh
Confidence 69999999963
No 73
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=22.85 E-value=1.2e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.8
Q ss_pred EEEecCCHHHHHHHHHHHHhcCCcEEEec
Q 048047 53 FIITPFHVSEIQAAIKCSKKSGLQIRVRS 81 (466)
Q Consensus 53 ~vv~p~~~~dV~~~v~~a~~~~~~~~vr~ 81 (466)
.|+.|.+.+|+..+++.|-+.+-|+.+|=
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999998877888773
No 74
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=22.76 E-value=1.2e+02 Score=28.11 Aligned_cols=34 Identities=9% Similarity=0.278 Sum_probs=31.5
Q ss_pred CcceEEcCCCCEEEEcCCCcHHHHHHHHHHhCCC
Q 048047 105 FSEISVNAEAKTAWVQSGATVGQLNYRIAEKSQN 138 (466)
Q Consensus 105 l~~v~~d~~~~~~~vg~G~~~~~v~~~l~~~g~~ 138 (466)
+++|++|-+.+.|.|+.-+.+.++...|+..|+.
T Consensus 34 i~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~ 67 (247)
T KOG4656|consen 34 INSVEVDLEQQIVSVETSVPPSEIQNTLENTGRD 67 (247)
T ss_pred cceEEEEhhhcEEEEEccCChHHHHHHHHhhChh
Confidence 4789999999999999999999999999999875
No 75
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.73 E-value=67 Score=28.95 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHHhc--CCcEEEeccccCCC--CCcccCCCCeEEEEcCCCcc
Q 048047 57 PFHVSEIQAAIKCSKKS--GLQIRVRSGGHDLE--GLSSISDVPFIIVDLINFSE 107 (466)
Q Consensus 57 p~~~~dV~~~v~~a~~~--~~~~~vr~gGh~~~--g~s~~~~~~~~~idl~~l~~ 107 (466)
.+|++||++++..++.. .+.+.|-+.|..+. .++... ....|+..+++
T Consensus 64 vtsekdv~aala~ak~kfgrld~~vncagia~a~ktyn~~k---~~~h~ledfqr 115 (260)
T KOG1199|consen 64 VTSEKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQK---KKHHDLEDFQR 115 (260)
T ss_pred cCcHHHHHHHHHHHHhhccceeeeeeccceeeeeeeeeecc---cccccHHHhhh
Confidence 47899999999988874 57778888887653 333333 34456666665
No 76
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.69 E-value=80 Score=31.10 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEE--eccccCC
Q 048047 57 PFHVSEIQAAIKCSKKSGLQIRV--RSGGHDL 86 (466)
Q Consensus 57 p~~~~dV~~~v~~a~~~~~~~~v--r~gGh~~ 86 (466)
.-|.+||+.+|++|+++||.|.+ -.-||+.
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~~ 99 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHST 99 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHHH
Confidence 45789999999999999999987 4678873
No 77
>PF14658 EF-hand_9: EF-hand domain
Probab=22.44 E-value=51 Score=24.64 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.4
Q ss_pred HHHHHhhhccCCCCC
Q 048047 435 YRLVHVKTMVDPENF 449 (466)
Q Consensus 435 ~RL~~IK~kYDP~nv 449 (466)
.+|+.+.+.+||++-
T Consensus 35 ~~Lq~l~~elDP~g~ 49 (66)
T PF14658_consen 35 SELQDLINELDPEGR 49 (66)
T ss_pred HHHHHHHHHhCCCCC
Confidence 389999999999986
No 78
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.30 E-value=1.2e+02 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccC
Q 048047 50 KPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHD 85 (466)
Q Consensus 50 ~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~ 85 (466)
.+.++|.-++++.+...+++|.++++++.+=.+|.+
T Consensus 67 ~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 67 EADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp H-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred cCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 488999999999999999999999999999777765
No 79
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.29 E-value=81 Score=27.11 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=30.8
Q ss_pred EEcCCCCCchHHhhhcccccccCCCCCCCCCEEEecCCHHHHHHHHHHHHhcCCcEEEecccc
Q 048047 22 IYTQNNSSYSSVLKSSIQNLVFSTPTNQKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGH 84 (466)
Q Consensus 22 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh 84 (466)
|..|+++.|...+...-.+.++ .-+.++|.++.+|.+++|+.+......+
T Consensus 36 vsdP~s~~Ygk~Lt~~e~~~~~-------------~p~~~~v~~V~~wL~~~G~~~~~~~~~~ 85 (143)
T PF09286_consen 36 VSDPGSPNYGKYLTPEEFAALF-------------APSPEDVAAVKSWLKSHGLTVVEVSANG 85 (143)
T ss_dssp HHTTTSTTTT----HHHHHHHH-------------S--HHHHHHHHHHHHHCT-EEEEEETTT
T ss_pred CcCCCCcccccCCCHHHHHHHH-------------CCCHHHHHHHHHHHHHcCCceeEEeCCC
Confidence 6679999998776543333332 2357899999999999998888744443
No 80
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.19 E-value=83 Score=31.50 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhcCCcEEE--eccccCC
Q 048047 58 FHVSEIQAAIKCSKKSGLQIRV--RSGGHDL 86 (466)
Q Consensus 58 ~~~~dV~~~v~~a~~~~~~~~v--r~gGh~~ 86 (466)
-|.+||+.+|++|+++||.|.+ =.-||+.
T Consensus 72 YT~~di~elv~yA~~rgI~vIPEiD~PGH~~ 102 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPEIDMPGHTN 102 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCCcHHHH
Confidence 4899999999999999999887 4577874
No 81
>COG2720 Uncharacterized vancomycin resistance protein [Defense mechanisms]
Probab=21.96 E-value=92 Score=31.33 Aligned_cols=127 Identities=17% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCCCEEEecCCHHHHHHHHHHHHhcCCcEEEeccccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHH--
Q 048047 49 QKPPFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVG-- 126 (466)
Q Consensus 49 ~~p~~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~-- 126 (466)
+.|.-|..|.+.+.=+..++... ++.-..+.+++.++.+.+-... .-|.+--..|+.+.+ +||-+..
T Consensus 137 ~~~~~i~vv~~~~~P~~~~~~la-~~~t~~~a~~~~s~~gss~~R~-~NI~laa~~idg~vv---------~PGe~FSFn 205 (376)
T COG2720 137 PGPTTIPVVIERQLPARTLALLA-RIKTQLLASGTTSFYGSSAERV-TNIRLAADAIDGTVV---------GPGETFSFN 205 (376)
T ss_pred CCceeeeeeecccCcchhHhhhc-ccceeeeeeeeeeecccCccce-eeeeehhhhcCCeEe---------cCCCceeec
Confidence 35555655555543344444444 4555666677777776553321 123333445665544 3443321
Q ss_pred -HHHHHHHHhCCC-ceeecCCCCCCceEeeeccCCCcCCccchhhHHHHHhhcCCCceEEEEEE--EEEEEecCc
Q 048047 127 -QLNYRIAEKSQN-LLAFPVGTCPGVAVGGHFSGGGYGALLRKYDLFWAIRGGGGPSFGIIISW--KIELVDVPS 197 (466)
Q Consensus 127 -~v~~~l~~~g~~-~l~~~~G~~~~vg~gG~~lgGG~g~~s~~~dLfwalrG~g~~~fGvVt~~--~~k~~p~~~ 197 (466)
.|-..-+.+|.. |+.+.+|...+ | +|||+--.|. -||||+-.+| +.||.+. +++.++.|+
T Consensus 206 ~~vG~rsa~~Gfv~g~iI~gg~~~~-G-----vGGGICQvSt--Tlfna~~~AG---L~iVeR~~HSy~v~yypp 269 (376)
T COG2720 206 KVVGPRSAANGFVEGPIISGGESDS-G-----VGGGICQVST--TLFNAVYQAG---LPIVERNNHSYRVFYYPP 269 (376)
T ss_pred cccCCcchhcCCccceEEECCcccc-c-----cCcceehhHH--HHHHHHHhcC---chhheeccccccCCcCCC
Confidence 111112334433 44455554433 3 3677777777 8999999999 7999876 456666654
No 82
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.74 E-value=86 Score=30.92 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEE--eccccC
Q 048047 57 PFHVSEIQAAIKCSKKSGLQIRV--RSGGHD 85 (466)
Q Consensus 57 p~~~~dV~~~v~~a~~~~~~~~v--r~gGh~ 85 (466)
+-|.+||..++++|+++|+.+.+ -.=||.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 36999999999999999999987 456776
No 83
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=21.58 E-value=5.2e+02 Score=28.14 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCC-EEEecCCHHHHHHHHHHHHhcC-CcEEEecc-ccCCCCCcccCCCCeEEEEcCCCcceEEcCCCCEEEEcCCCcHH
Q 048047 50 KPP-FIITPFHVSEIQAAIKCSKKSG-LQIRVRSG-GHDLEGLSSISDVPFIIVDLINFSEISVNAEAKTAWVQSGATVG 126 (466)
Q Consensus 50 ~p~-~vv~p~~~~dV~~~v~~a~~~~-~~~~vr~g-Gh~~~g~s~~~~~~~~~idl~~l~~v~~d~~~~~~~vg~G~~~~ 126 (466)
-|- .|..|+++++.++.+.+|..++ -|+++|=- |+......... .-.++..+ ...+-...+.+.++-|....
T Consensus 440 iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~---~~~~~~Gk--~~i~~~G~~vail~~G~~~~ 514 (627)
T COG1154 440 IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPE---LEPLEIGK--GELLKEGEKVAILAFGTMLP 514 (627)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccc---cccccccc--eEEEecCCcEEEEecchhhH
Confidence 344 6788999999999999999998 69999864 54432211100 11233333 22334566788889898887
Q ss_pred H---HHHHHHHhC
Q 048047 127 Q---LNYRIAEKS 136 (466)
Q Consensus 127 ~---v~~~l~~~g 136 (466)
. +.+.|.++|
T Consensus 515 ~al~vae~L~~~G 527 (627)
T COG1154 515 EALKVAEKLNAYG 527 (627)
T ss_pred HHHHHHHHHHhcC
Confidence 4 445555544
No 84
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=21.24 E-value=1.2e+02 Score=24.76 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=29.0
Q ss_pred CCC-EEEecCCHHHHHHHHHHHHhcCCcEEEeccc
Q 048047 50 KPP-FIITPFHVSEIQAAIKCSKKSGLQIRVRSGG 83 (466)
Q Consensus 50 ~p~-~vv~p~~~~dV~~~v~~a~~~~~~~~vr~gG 83 (466)
.|. .+|++.+..|++.++..|.++|+|+.+.+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 465 5677788899999999999999999998754
No 85
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.63 E-value=1.5e+02 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=27.7
Q ss_pred EEecCCHHHHHHHHHHHHhcCCcEEEeccccCC
Q 048047 54 IITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDL 86 (466)
Q Consensus 54 vv~p~~~~dV~~~v~~a~~~~~~~~vr~gGh~~ 86 (466)
+=......++.++++.|+++|+++..-.+.++.
T Consensus 54 iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 54 ISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 335667899999999999999999998887764
No 86
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.50 E-value=96 Score=30.80 Aligned_cols=28 Identities=14% Similarity=0.438 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCcEEE--eccccC
Q 048047 58 FHVSEIQAAIKCSKKSGLQIRV--RSGGHD 85 (466)
Q Consensus 58 ~~~~dV~~~v~~a~~~~~~~~v--r~gGh~ 85 (466)
-|.+|+..+|++|+++||.+.+ -.-||+
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 5899999999999999999886 345555
No 87
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.35 E-value=80 Score=31.52 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHhcCCcEEE--eccccC
Q 048047 57 PFHVSEIQAAIKCSKKSGLQIRV--RSGGHD 85 (466)
Q Consensus 57 p~~~~dV~~~v~~a~~~~~~~~v--r~gGh~ 85 (466)
.-|.+||+.+|++|+++||.|.+ -.-||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 45789999999999999999987 567776
Done!