Query 048049
Match_columns 77
No_of_seqs 101 out of 172
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 05:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02993 lupeol synthase 100.0 3.5E-34 7.5E-39 239.2 7.7 71 1-72 1-71 (763)
2 PLN03012 Camelliol C synthase 100.0 4E-34 8.6E-39 238.9 7.7 71 1-72 1-71 (759)
3 KOG0497 Oxidosqualene-lanoster 99.9 2.4E-28 5.1E-33 204.9 3.4 72 1-73 1-72 (760)
4 smart00120 HX Hemopexin-like r 80.6 0.96 2.1E-05 24.1 1.1 13 23-35 15-27 (45)
5 PF00045 Hemopexin: Hemopexin; 73.8 1.5 3.2E-05 24.2 0.6 12 23-34 15-26 (45)
6 COG2173 DdpX D-alanyl-D-alanin 73.3 1.3 2.8E-05 33.8 0.4 20 19-38 51-71 (211)
7 PF01011 PQQ: PQQ enzyme repea 68.7 2.7 5.9E-05 22.5 0.9 23 14-36 9-31 (38)
8 PF13387 DUF4105: Domain of un 67.9 3.8 8.3E-05 28.4 1.8 24 19-43 89-112 (176)
9 PRK10178 D-alanyl-D-alanine di 61.7 6.4 0.00014 29.0 2.0 35 18-52 24-58 (184)
10 smart00564 PQQ beta-propeller 59.4 6.5 0.00014 19.5 1.3 19 14-32 15-33 (33)
11 PF07477 Glyco_hydro_67C: Glyc 58.3 3.2 6.8E-05 31.8 -0.1 40 24-67 13-52 (225)
12 COG3592 Uncharacterized conser 56.8 8.6 0.00019 25.3 1.8 28 14-46 35-62 (74)
13 PF06737 Transglycosylas: Tran 48.9 15 0.00033 23.9 2.0 39 12-52 16-67 (77)
14 PF09292 Neil1-DNA_bind: Endon 47.6 8.8 0.00019 22.5 0.7 16 14-29 14-29 (39)
15 PF09164 VitD-bind_III: Vitami 46.2 27 0.00057 22.7 2.8 24 33-57 27-50 (68)
16 PF05979 DUF896: Bacterial pro 45.5 25 0.00055 22.2 2.6 19 36-54 19-37 (65)
17 cd07355 HN_L-delphilin-R2_like 44.7 26 0.00055 23.3 2.6 22 35-56 15-36 (80)
18 TIGR03009 plancto_dom_2 Planct 44.7 12 0.00026 28.0 1.1 12 25-36 71-82 (210)
19 PRK11546 zraP zinc resistance 43.2 26 0.00056 25.1 2.6 18 36-53 44-61 (143)
20 PRK02539 hypothetical protein; 41.2 30 0.00064 23.1 2.5 20 35-54 20-39 (85)
21 PF10892 DUF2688: Protein of u 40.9 22 0.00047 22.6 1.7 13 36-48 45-57 (60)
22 PF06433 Me-amine-dh_H: Methyl 40.5 17 0.00037 29.3 1.5 14 23-36 266-279 (342)
23 KOG2515 Mannosyltransferase [C 39.5 11 0.00023 32.5 0.3 13 24-36 54-66 (568)
24 PF05726 Pirin_C: Pirin C-term 39.4 26 0.00057 22.3 2.0 25 27-56 79-103 (104)
25 PF06226 DUF1007: Protein of u 38.9 17 0.00037 26.3 1.1 9 26-34 42-50 (212)
26 PRK01631 hypothetical protein; 38.8 35 0.00075 22.3 2.5 20 35-54 19-38 (76)
27 TIGR00547 lolA periplasmic cha 38.2 19 0.00042 26.0 1.4 13 25-37 85-97 (204)
28 cd07148 ALDH_RL0313 Uncharacte 37.2 68 0.0015 25.2 4.3 34 18-53 2-36 (455)
29 TIGR00811 sit silicon transpor 36.1 8 0.00017 33.1 -1.0 25 31-55 427-452 (545)
30 KOG0705 GTPase-activating prot 36.1 20 0.00043 31.8 1.3 17 24-43 454-470 (749)
31 PF12202 OSR1_C: Oxidative-str 35.3 26 0.00057 20.3 1.4 14 29-42 25-38 (38)
32 KOG3043 Predicted hydrolase re 35.2 40 0.00087 26.3 2.7 20 34-53 216-235 (242)
33 PRK01546 hypothetical protein; 35.1 43 0.00092 22.0 2.5 20 35-54 21-40 (79)
34 cd00161 RICIN Ricin-type beta- 34.7 41 0.00089 19.6 2.2 20 15-34 24-43 (124)
35 cd00730 rubredoxin Rubredoxin; 32.9 22 0.00048 21.1 0.8 11 29-39 9-19 (50)
36 PF14974 DUF4511: Domain of un 32.4 58 0.0013 22.3 2.9 27 36-71 19-45 (105)
37 PF14206 Cys_rich_CPCC: Cystei 31.9 38 0.00081 21.9 1.8 25 28-53 27-58 (78)
38 smart00831 Cation_ATPase_N Cat 31.9 79 0.0017 17.9 3.0 23 43-65 15-37 (64)
39 PF00301 Rubredoxin: Rubredoxi 31.5 19 0.00042 21.1 0.4 12 29-40 9-20 (47)
40 PF12399 BCA_ABC_TP_C: Branche 31.3 34 0.00073 17.5 1.2 17 35-51 5-21 (23)
41 PF13801 Metal_resist: Heavy-m 30.7 65 0.0014 19.3 2.7 20 35-54 41-60 (125)
42 smart00717 SANT SANT SWI3, AD 29.4 84 0.0018 15.7 2.9 34 37-70 5-45 (49)
43 PF11959 DUF3473: Domain of un 29.1 25 0.00053 24.2 0.6 9 28-36 82-90 (133)
44 COG0774 LpxC UDP-3-O-acyl-N-ac 29.1 37 0.00079 27.3 1.7 26 21-48 163-190 (300)
45 smart00390 GoLoco LGN motif, p 28.8 34 0.00074 18.3 1.0 9 63-71 6-14 (26)
46 COG1773 Rubredoxin [Energy pro 28.5 26 0.00057 21.6 0.6 11 29-39 11-21 (55)
47 COG0184 RpsO Ribosomal protein 28.3 81 0.0017 20.9 3.0 26 32-57 19-49 (89)
48 CHL00027 rps15 ribosomal prote 27.7 92 0.002 20.7 3.2 23 30-52 14-36 (90)
49 KOG3608 Zn finger proteins [Ge 27.6 11 0.00023 31.7 -1.6 22 51-72 382-403 (467)
50 PF11453 DUF2950: Protein of u 25.9 29 0.00063 27.4 0.6 12 28-39 90-101 (271)
51 PF09252 Feld-I_B: Allergen Fe 25.6 45 0.00097 21.4 1.3 25 35-59 27-51 (67)
52 PF05700 BCAS2: Breast carcino 25.0 65 0.0014 23.4 2.2 18 31-48 15-32 (221)
53 cd00094 HX Hemopexin-like repe 24.5 35 0.00076 23.7 0.7 16 23-38 116-131 (194)
54 PF13964 Kelch_6: Kelch motif 24.4 52 0.0011 17.8 1.3 14 26-39 28-41 (50)
55 PF00652 Ricin_B_lectin: Ricin 24.2 58 0.0013 19.4 1.6 20 14-33 68-87 (124)
56 PF13297 Telomere_Sde2_2: Telo 23.4 49 0.0011 20.8 1.2 9 35-43 32-40 (60)
57 TIGR03042 PS_II_psbQ_bact phot 23.1 98 0.0021 22.1 2.8 25 33-57 27-51 (142)
58 PF04591 DUF596: Protein of un 23.0 68 0.0015 20.7 1.8 17 35-53 16-32 (70)
59 PF04802 SMK-1: Component of I 23.0 1E+02 0.0022 22.5 3.0 41 28-74 60-111 (193)
60 PF13415 Kelch_3: Galactose ox 23.0 46 0.001 18.1 0.9 12 26-37 19-30 (49)
61 COG5397 Uncharacterized conser 22.8 1.1E+02 0.0024 25.1 3.3 28 22-49 39-79 (349)
62 PF13308 YARHG: YARHG domain 22.7 54 0.0012 20.5 1.3 29 20-49 46-78 (81)
63 PF13570 PQQ_3: PQQ-like domai 22.5 43 0.00092 17.6 0.7 10 25-34 1-10 (40)
64 COG5474 Uncharacterized conser 22.4 82 0.0018 23.3 2.3 26 28-53 45-70 (159)
65 KOG3355 Mitochondrial sulfhydr 22.2 17 0.00037 27.2 -1.3 27 20-46 69-102 (177)
66 COG3575 Uncharacterized protei 21.7 92 0.002 23.5 2.5 30 28-57 61-91 (184)
67 KOG1621 1D-myo-inositol-tripho 21.6 50 0.0011 27.9 1.2 14 30-43 291-304 (458)
68 COG4224 Uncharacterized protei 21.6 1.1E+02 0.0023 20.3 2.5 19 35-53 20-38 (77)
69 PF07985 SRR1: SRR1; InterPro 21.5 1.3E+02 0.0029 17.6 2.8 20 26-46 35-54 (56)
70 PF11178 DUF2963: Protein of u 21.5 56 0.0012 19.2 1.1 12 26-37 9-20 (51)
71 PF06955 XET_C: Xyloglucan end 21.2 82 0.0018 18.3 1.8 17 36-52 16-32 (51)
72 KOG2881 Predicted membrane pro 21.2 58 0.0013 26.1 1.5 19 28-47 151-169 (294)
73 PF05593 RHS_repeat: RHS Repea 20.9 75 0.0016 16.9 1.5 18 17-34 7-25 (38)
74 PF13373 DUF2407_C: DUF2407 C- 20.7 98 0.0021 21.7 2.4 17 37-56 12-28 (140)
75 cd00353 Ribosomal_S15p_S13e Ri 20.7 1.6E+02 0.0035 18.4 3.2 25 33-57 14-43 (80)
76 PF14304 CSTF_C: Transcription 20.4 94 0.002 18.5 1.9 20 35-54 24-43 (46)
77 PF03842 Silic_transp: Silicon 20.4 19 0.00041 30.7 -1.4 27 29-55 426-453 (512)
78 PF13524 Glyco_trans_1_2: Glyc 20.3 1.1E+02 0.0025 17.9 2.3 41 25-65 40-90 (92)
79 cd04283 ZnMc_hatching_enzyme Z 20.3 1.7E+02 0.0036 21.1 3.5 30 29-59 8-40 (182)
80 PF00690 Cation_ATPase_N: Cati 20.1 1.5E+02 0.0032 17.3 2.7 26 42-67 24-49 (69)
No 1
>PLN02993 lupeol synthase
Probab=100.00 E-value=3.5e-34 Score=239.24 Aligned_cols=71 Identities=55% Similarity=1.039 Sum_probs=67.5
Q ss_pred CceeeecCCCCCCCCceeccCCcceeeeeEeCCCCCCHHHHHHHHHHHHHHhhccCccCCchhHHHHHHHhh
Q 048049 1 MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVIC 72 (77)
Q Consensus 1 MWkLKiaeg~~g~~p~L~S~Nn~vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~Q~~~ 72 (77)
||||||++|+ +++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+||||||||++
T Consensus 1 ~wrl~~~~~~-~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 71 (763)
T PLN02993 1 MWKLKIGEGN-GEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKGCSDLLWRMQFLK 71 (763)
T ss_pred CCceEeCCCC-CCCcceecccCcCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHh
Confidence 9999999983 2399999999999999999999999999999999999999999999999999999999765
No 2
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=4e-34 Score=238.92 Aligned_cols=71 Identities=61% Similarity=1.110 Sum_probs=67.5
Q ss_pred CceeeecCCCCCCCCceeccCCcceeeeeEeCCCCCCHHHHHHHHHHHHHHhhccCccCCchhHHHHHHHhh
Q 048049 1 MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVIC 72 (77)
Q Consensus 1 MWkLKiaeg~~g~~p~L~S~Nn~vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~Q~~~ 72 (77)
||||||++|+ +++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+||||||||++
T Consensus 1 ~wrl~~~~~~-~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~d~~~r~~~~~ 71 (759)
T PLN03012 1 MWKLKIAEGN-GDDPYLFSTNNFAGRQTWEFDPDAGSPEELAAVEEARRIFYDDRFHVKASSDLIWRMQFLK 71 (759)
T ss_pred CCceEeCCCC-CCCcceecccccCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHh
Confidence 9999999983 2399999999999999999999999999999999999999999999999999999999765
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.94 E-value=2.4e-28 Score=204.91 Aligned_cols=72 Identities=56% Similarity=0.934 Sum_probs=69.0
Q ss_pred CceeeecCCCCCCCCceeccCCcceeeeeEeCCCCCCHHHHHHHHHHHHHHhhccCccCCchhHHHHHHHhhh
Q 048049 1 MWRLKIGDHRTKNDPYIFSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICV 73 (77)
Q Consensus 1 MWkLKiaeg~~g~~p~L~S~Nn~vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~Q~~~~ 73 (77)
||||||++|. |.+|+|+|||||||||+||||+++|||||+|+||+||++|.+||+..|+|+||+|||||++-
T Consensus 1 mw~l~~~~~~-~~~~~l~~tn~~~grq~W~~d~~~~~~e~~~~v~~~r~~f~~~~~~~k~s~dl~~r~qf~~E 72 (760)
T KOG0497|consen 1 MWRLKIGEGA-GEDPHLFTTNNFVGRQTWEFDADAGGPEELAYVEEARANFSDNRSREKASLDLLWRMQFLRE 72 (760)
T ss_pred Ccceeecccc-CCCCcccccccccCceeEEecCCCCCcchHHHHHHHHHhcCCcchhHHHhcccchhhhhhhh
Confidence 9999999984 67999999999999999999999999999999999999999999999999999999998754
No 4
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=80.58 E-value=0.96 Score=24.12 Aligned_cols=13 Identities=38% Similarity=1.002 Sum_probs=10.9
Q ss_pred cceeeeeEeCCCC
Q 048049 23 HVGRQIWEFDPDA 35 (77)
Q Consensus 23 ~vGRQ~WEFDp~~ 35 (77)
|.|+|+|.||+..
T Consensus 15 Fkg~~yw~~~~~~ 27 (45)
T smart00120 15 FKGDKYWRFDPKR 27 (45)
T ss_pred EeCCEEEEEcCCc
Confidence 5699999999863
No 5
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=73.76 E-value=1.5 Score=24.15 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=10.6
Q ss_pred cceeeeeEeCCC
Q 048049 23 HVGRQIWEFDPD 34 (77)
Q Consensus 23 ~vGRQ~WEFDp~ 34 (77)
|.|+|+|+||..
T Consensus 15 Fkg~~ywr~~~~ 26 (45)
T PF00045_consen 15 FKGNQYWRFDES 26 (45)
T ss_dssp EETTEEEEEETT
T ss_pred EECCEEEEEcCc
Confidence 579999999987
No 6
>COG2173 DdpX D-alanyl-D-alanine dipeptidase [Cell envelope biogenesis, outer membrane]
Probab=73.25 E-value=1.3 Score=33.82 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=16.1
Q ss_pred ccCCcceeeeeEeCCC-CCCH
Q 048049 19 STNNHVGRQIWEFDPD-ADSP 38 (77)
Q Consensus 19 S~Nn~vGRQ~WEFDp~-~Gtp 38 (77)
+.|||.||++|++++- +-+|
T Consensus 51 ~a~nf~grp~~~~~~~c~l~~ 71 (211)
T COG2173 51 GANNFTGRPIYEIGARCLLHP 71 (211)
T ss_pred hccccccccccccCchheecH
Confidence 7899999999999865 3344
No 7
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=68.69 E-value=2.7 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.794 Sum_probs=20.0
Q ss_pred CCceeccCCcceeeeeEeCCCCC
Q 048049 14 DPYIFSTNNHVGRQIWEFDPDAD 36 (77)
Q Consensus 14 ~p~L~S~Nn~vGRQ~WEFDp~~G 36 (77)
+..|+..|.--|-..|+|++...
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSSG
T ss_pred CCEEEEEECCCCCEEEeeeCCCC
Confidence 56899999999999999997753
No 8
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=67.89 E-value=3.8 Score=28.44 Aligned_cols=24 Identities=38% Similarity=0.700 Sum_probs=17.8
Q ss_pred ccCCcceeeeeEeCCCCCCHHHHHH
Q 048049 19 STNNHVGRQIWEFDPDADSPEELAE 43 (77)
Q Consensus 19 S~Nn~vGRQ~WEFDp~~GtpEE~a~ 43 (77)
.=.+.-||.+|||.-++ ||||+.+
T Consensus 89 ~Y~~~e~R~v~~y~LnL-s~ee~~~ 112 (176)
T PF13387_consen 89 EYSNVEGRDVWEYPLNL-SPEEKQR 112 (176)
T ss_pred HHhhhhCCcEEEEEeeC-CHHHHHH
Confidence 33455789999999886 6887654
No 9
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=61.73 E-value=6.4 Score=28.95 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=22.7
Q ss_pred eccCCcceeeeeEeCCCCCCHHHHHHHHHHHHHHh
Q 048049 18 FSTNNHVGRQIWEFDPDADSPEELAEVEGARLNYF 52 (77)
Q Consensus 18 ~S~Nn~vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~ 52 (77)
.|+|||+|+.+....--..+++--.++.+|.+...
T Consensus 24 at~~NF~g~~iY~~~~c~l~~~aA~aL~~a~~~l~ 58 (184)
T PRK10178 24 ATADNLTGKPIYREARCLLHKDAEAALRKAVSIAQ 58 (184)
T ss_pred ccCCCcCCCccccCCeEEECHHHHHHHHHHHHHHH
Confidence 48999999999432112357766666666666554
No 10
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=59.37 E-value=6.5 Score=19.51 Aligned_cols=19 Identities=16% Similarity=0.684 Sum_probs=16.2
Q ss_pred CCceeccCCcceeeeeEeC
Q 048049 14 DPYIFSTNNHVGRQIWEFD 32 (77)
Q Consensus 14 ~p~L~S~Nn~vGRQ~WEFD 32 (77)
+-.|+..|--.|...|+|+
T Consensus 15 ~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 15 DGTLYALDAKTGEILWTYK 33 (33)
T ss_pred CCEEEEEEcccCcEEEEcC
Confidence 5588889988999999975
No 11
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=58.27 E-value=3.2 Score=31.84 Aligned_cols=40 Identities=35% Similarity=0.618 Sum_probs=26.6
Q ss_pred ceeeeeEeCCCCCCHHHHHHHHHHHHHHhhccCccCCchhHHHH
Q 048049 24 VGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQ 67 (77)
Q Consensus 24 vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR 67 (77)
-||=.| ||++ |+|++|+ |=+|.-|..+---+..=.++||+
T Consensus 13 fGRLAW--dp~l-sse~Ia~-EW~~~TF~~d~~~~~~v~~mm~~ 52 (225)
T PF07477_consen 13 FGRLAW--DPDL-SSEEIAD-EWIRMTFGNDPKVVETVVDMMMR 52 (225)
T ss_dssp HHHHHH---TTS--HHHHHH-HHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHhhc--CCCC-CHHHHHH-HHHHhhcCCCHHHHHHHHHHHHH
Confidence 489999 9997 6888764 78999998766555666677765
No 12
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=56.80 E-value=8.6 Score=25.27 Aligned_cols=28 Identities=39% Similarity=0.780 Sum_probs=22.3
Q ss_pred CCceeccCCcceeeeeEeCCCCCCHHHHHHHHH
Q 048049 14 DPYIFSTNNHVGRQIWEFDPDADSPEELAEVEG 46 (77)
Q Consensus 14 ~p~L~S~Nn~vGRQ~WEFDp~~GtpEE~a~VE~ 46 (77)
+|.++- +||.-| -+||++.+||...|-+
T Consensus 35 n~~vF~----~~rkPW-I~Pd~~~ve~i~~vi~ 62 (74)
T COG3592 35 NPKVFN----LGRKPW-IMPDAVDVEEIVKVID 62 (74)
T ss_pred CHhhcc----cCCCCc-cCCCCCCHHHHHHHHH
Confidence 666654 899999 5999999999776644
No 13
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=48.88 E-value=15 Score=23.90 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCCCceeccCCccee-----eeeE------e--CCCCCCHHHHHHHHHHHHHHh
Q 048049 12 KNDPYIFSTNNHVGR-----QIWE------F--DPDADSPEELAEVEGARLNYF 52 (77)
Q Consensus 12 g~~p~L~S~Nn~vGR-----Q~WE------F--Dp~~GtpEE~a~VE~aR~~F~ 52 (77)
|+++-+-+.|.+-|- .+|. | .|+..|++| |+..|.+-+.
T Consensus 16 gGn~~~ntgnG~yGg~Qf~~sTW~a~Gg~~yap~~~~As~~e--Qi~~A~~l~~ 67 (77)
T PF06737_consen 16 GGNWAINTGNGYYGGLQFSQSTWRAYGGSGYAPRPDQASRAE--QIAVAEKLYA 67 (77)
T ss_dssp TT-TT---SSSBBTTTTBBHHHHHHTTGGGT-SSCCCS-HHH--HHHHHHHHHH
T ss_pred CCCCccCCCCCccceeccCHHHHHHhCCCcCCCChhhCCHHH--HHHHHHHHHH
Confidence 457778888888773 4565 4 677889988 6666666554
No 14
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=47.60 E-value=8.8 Score=22.54 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=10.9
Q ss_pred CCceeccCCcceeeee
Q 048049 14 DPYIFSTNNHVGRQIW 29 (77)
Q Consensus 14 ~p~L~S~Nn~vGRQ~W 29 (77)
.|-+.|+..+-||-+|
T Consensus 14 v~gM~sl~D~~gRTiW 29 (39)
T PF09292_consen 14 VPGMKSLRDRNGRTIW 29 (39)
T ss_dssp -TT-EEEE-TTS-EEE
T ss_pred ccccccccccCCCEEE
Confidence 4558999999999999
No 15
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=46.20 E-value=27 Score=22.66 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCc
Q 048049 33 PDADSPEELAEVEGARLNYFNNRFN 57 (77)
Q Consensus 33 p~~GtpEE~a~VE~aR~~F~~nRf~ 57 (77)
|++ ||+|+++.-+.|.+|...--.
T Consensus 27 P~a-t~~~l~~lve~RsdFAS~CC~ 50 (68)
T PF09164_consen 27 PDA-TPTELKELVEKRSDFASKCCS 50 (68)
T ss_dssp TTS--HHHHHHHHHHHHHHHHHHSS
T ss_pred CCC-CHHHHHHHHHHHhhHHHHhhc
Confidence 664 899999999999999986543
No 16
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=45.50 E-value=25 Score=22.19 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 048049 36 DSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~n 54 (77)
-|+||.++-+..|++|-++
T Consensus 19 LT~eE~~Eq~~LR~eYl~~ 37 (65)
T PF05979_consen 19 LTEEEKAEQAELRQEYLQN 37 (65)
T ss_dssp --HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999764
No 17
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=44.73 E-value=26 Score=23.34 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHhhccC
Q 048049 35 ADSPEELAEVEGARLNYFNNRF 56 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~nRf 56 (77)
+-||.||..|-+|=+.|..+|-
T Consensus 15 lLt~~ER~~i~qaL~~y~~~Rn 36 (80)
T cd07355 15 LLTPPERYGIKKALEDYFQHRN 36 (80)
T ss_pred hCCHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999884
No 18
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=44.70 E-value=12 Score=27.96 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=10.3
Q ss_pred eeeeeEeCCCCC
Q 048049 25 GRQIWEFDPDAD 36 (77)
Q Consensus 25 GRQ~WEFDp~~G 36 (77)
|-.+|.|||++-
T Consensus 71 Gk~lW~YDpdle 82 (210)
T TIGR03009 71 GTAVYAYNGLAK 82 (210)
T ss_pred CCEEEEECCChh
Confidence 789999999853
No 19
>PRK11546 zraP zinc resistance protein; Provisional
Probab=43.19 E-value=26 Score=25.06 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 048049 36 DSPEELAEVEGARLNYFN 53 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~ 53 (77)
-|||++++++..+++|..
T Consensus 44 LT~EQQa~~q~I~~~f~~ 61 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYA 61 (143)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 599999999999999976
No 20
>PRK02539 hypothetical protein; Provisional
Probab=41.22 E-value=30 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
.-|+||.++-++.|+.|-++
T Consensus 20 gLT~eEk~Eq~~LR~eYl~~ 39 (85)
T PRK02539 20 GLTGEEKVEQAKLREEYIEG 39 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999764
No 21
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=40.92 E-value=22 Score=22.60 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHH
Q 048049 36 DSPEELAEVEGAR 48 (77)
Q Consensus 36 GtpEE~a~VE~aR 48 (77)
-||||..+++++-
T Consensus 45 itpEE~~~I~e~~ 57 (60)
T PF10892_consen 45 ITPEEDREILEAT 57 (60)
T ss_pred CCHHHHHHHHHHH
Confidence 4899999999864
No 22
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=40.49 E-value=17 Score=29.26 Aligned_cols=14 Identities=21% Similarity=0.741 Sum_probs=11.2
Q ss_pred cceeeeeEeCCCCC
Q 048049 23 HVGRQIWEFDPDAD 36 (77)
Q Consensus 23 ~vGRQ~WEFDp~~G 36 (77)
.-|+++|+||+..+
T Consensus 266 dpgteVWv~D~~t~ 279 (342)
T PF06433_consen 266 DPGTEVWVYDLKTH 279 (342)
T ss_dssp S-EEEEEEEETTTT
T ss_pred CCceEEEEEECCCC
Confidence 45899999999865
No 23
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.55 E-value=11 Score=32.50 Aligned_cols=13 Identities=38% Similarity=0.892 Sum_probs=11.0
Q ss_pred ceeeeeEeCCCCC
Q 048049 24 VGRQIWEFDPDAD 36 (77)
Q Consensus 24 vGRQ~WEFDp~~G 36 (77)
-|=|||||-|+.+
T Consensus 54 ~GfQTWEYSP~ya 66 (568)
T KOG2515|consen 54 EGFQTWEYSPEYA 66 (568)
T ss_pred ccccceeeCchhH
Confidence 4889999999864
No 24
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=39.39 E-value=26 Score=22.30 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=18.1
Q ss_pred eeeEeCCCCCCHHHHHHHHHHHHHHhhccC
Q 048049 27 QIWEFDPDADSPEELAEVEGARLNYFNNRF 56 (77)
Q Consensus 27 Q~WEFDp~~GtpEE~a~VE~aR~~F~~nRf 56 (77)
|.|=|- ..|.|| |++|.++|.+.||
T Consensus 79 ~~GpFV--mnt~ee---I~qA~~dy~~g~f 103 (104)
T PF05726_consen 79 QYGPFV--MNTREE---IEQAFEDYQNGKF 103 (104)
T ss_dssp EETTEE--ESSHHH---HHHHHHHHHCT-T
T ss_pred EECCcc--cCCHHH---HHHHHHHHHhCCC
Confidence 556565 346665 9999999999887
No 25
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=38.86 E-value=17 Score=26.27 Aligned_cols=9 Identities=44% Similarity=0.885 Sum_probs=7.8
Q ss_pred eeeeEeCCC
Q 048049 26 RQIWEFDPD 34 (77)
Q Consensus 26 RQ~WEFDp~ 34 (77)
|++|.||+-
T Consensus 42 ~~~W~fDe~ 50 (212)
T PF06226_consen 42 RMTWTFDEF 50 (212)
T ss_pred EEEEEeCch
Confidence 799999974
No 26
>PRK01631 hypothetical protein; Provisional
Probab=38.76 E-value=35 Score=22.33 Aligned_cols=20 Identities=25% Similarity=0.219 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
.-|++|.++-...|+.|-++
T Consensus 19 gLT~eE~~Eq~~LR~eYl~~ 38 (76)
T PRK01631 19 GLTVDEKQEQQMLRQNYTQT 38 (76)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999876
No 27
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=38.16 E-value=19 Score=26.00 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=10.9
Q ss_pred eeeeeEeCCCCCC
Q 048049 25 GRQIWEFDPDADS 37 (77)
Q Consensus 25 GRQ~WEFDp~~Gt 37 (77)
|..+|-|||+.-.
T Consensus 85 G~~vw~Ydp~leQ 97 (204)
T TIGR00547 85 GKTLWFYDPFVEQ 97 (204)
T ss_pred CCEEEEECCCCce
Confidence 8899999998643
No 28
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=37.20 E-value=68 Score=25.22 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=25.4
Q ss_pred eccCCcceeeeeEeCCCCCCHHHH-HHHHHHHHHHhh
Q 048049 18 FSTNNHVGRQIWEFDPDADSPEEL-AEVEGARLNYFN 53 (77)
Q Consensus 18 ~S~Nn~vGRQ~WEFDp~~GtpEE~-a~VE~aR~~F~~ 53 (77)
.+.|-.-|.-++++- ..|++|. +.|+.||+.|..
T Consensus 2 ~~~~P~t~~~i~~~~--~~~~~~v~~av~~A~~a~~~ 36 (455)
T cd07148 2 EVVNPFDLKPIGEVP--TVDWAAIDKALDTAHALFLD 36 (455)
T ss_pred CccCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHhh
Confidence 355667788888876 4566665 679999999976
No 29
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=36.13 E-value=8 Score=33.13 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=20.5
Q ss_pred eCCC-CCCHHHHHHHHHHHHHHhhcc
Q 048049 31 FDPD-ADSPEELAEVEGARLNYFNNR 55 (77)
Q Consensus 31 FDp~-~GtpEE~a~VE~aR~~F~~nR 55 (77)
+|.- -||||||++-+++-..|...|
T Consensus 427 ~devyvgt~eer~~~~~~d~~~~~~~ 452 (545)
T TIGR00811 427 LDEVYVGTAEERAAGEKPDHSVHAGR 452 (545)
T ss_pred cceeEeCCHHHhhhccCCcccccccc
Confidence 4555 499999999999988888865
No 30
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=36.12 E-value=20 Score=31.80 Aligned_cols=17 Identities=41% Similarity=0.755 Sum_probs=14.7
Q ss_pred ceeeeeEeCCCCCCHHHHHH
Q 048049 24 VGRQIWEFDPDADSPEELAE 43 (77)
Q Consensus 24 vGRQ~WEFDp~~GtpEE~a~ 43 (77)
.| |+|+|. |+|-|||.+
T Consensus 454 tg-qtWhFe--Att~EERda 470 (749)
T KOG0705|consen 454 TG-QTWHFE--ATTYEERDA 470 (749)
T ss_pred cc-chhhhh--hcchhhHHH
Confidence 57 999998 889999964
No 31
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=35.27 E-value=26 Score=20.28 Aligned_cols=14 Identities=50% Similarity=0.814 Sum_probs=10.3
Q ss_pred eEeCCCCCCHHHHH
Q 048049 29 WEFDPDADSPEELA 42 (77)
Q Consensus 29 WEFDp~~GtpEE~a 42 (77)
.+||+...|||+.|
T Consensus 25 F~F~~~~D~~e~VA 38 (38)
T PF12202_consen 25 FEFDLGKDTAEEVA 38 (38)
T ss_dssp EEEETTT--HHHHH
T ss_pred EEEecCCCcccccC
Confidence 68999999999865
No 32
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=35.22 E-value=40 Score=26.29 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 048049 34 DADSPEELAEVEGARLNYFN 53 (77)
Q Consensus 34 ~~GtpEE~a~VE~aR~~F~~ 53 (77)
+..+||++..+|+|+++|.+
T Consensus 216 ~~~~Ped~~~~eea~~~~~~ 235 (242)
T KOG3043|consen 216 NISSPEDKKAAEEAYQRFIS 235 (242)
T ss_pred CCCChhHHHHHHHHHHHHHH
Confidence 45699999999999999875
No 33
>PRK01546 hypothetical protein; Provisional
Probab=35.12 E-value=43 Score=21.99 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
.-|++|.++-+..|+.|-++
T Consensus 21 gLT~eEk~Eq~~LR~eYl~~ 40 (79)
T PRK01546 21 GLTEEEQRERQSLREQYLKG 40 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999764
No 34
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=34.66 E-value=41 Score=19.59 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=15.1
Q ss_pred CceeccCCcceeeeeEeCCC
Q 048049 15 PYIFSTNNHVGRQIWEFDPD 34 (77)
Q Consensus 15 p~L~S~Nn~vGRQ~WEFDp~ 34 (77)
..|++.++.-+.|.|.|+++
T Consensus 24 v~~~~c~~~~~~Q~W~~~~~ 43 (124)
T cd00161 24 VQLYPCHGNGNNQKWTLTSD 43 (124)
T ss_pred EEEEECCCCCccCCEEEeCC
Confidence 35677776657899999983
No 35
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=32.94 E-value=22 Score=21.07 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=8.2
Q ss_pred eEeCCCCCCHH
Q 048049 29 WEFDPDADSPE 39 (77)
Q Consensus 29 WEFDp~~GtpE 39 (77)
|+|||+.|.|+
T Consensus 9 yiYd~~~Gd~~ 19 (50)
T cd00730 9 YIYDPAEGDPD 19 (50)
T ss_pred eEECCCCCCcc
Confidence 88999876553
No 36
>PF14974 DUF4511: Domain of unknown function (DUF4511)
Probab=32.37 E-value=58 Score=22.33 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHhhccCccCCchhHHHHHHHh
Q 048049 36 DSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVI 71 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~Q~~ 71 (77)
.+||-.+.+++|+.+ .+.|+++.||+.
T Consensus 19 ~~peN~~kl~eAk~~---------agndm~k~mq~v 45 (105)
T PF14974_consen 19 NQPENAAKLEEAKAN---------AGNDMLKMMQFV 45 (105)
T ss_pred cCchHHHHHHHHHHh---------ccchHHHHHHHH
Confidence 578888899998864 348999999974
No 37
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=31.94 E-value=38 Score=21.95 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=17.0
Q ss_pred eeEeCCC-------CCCHHHHHHHHHHHHHHhh
Q 048049 28 IWEFDPD-------ADSPEELAEVEGARLNYFN 53 (77)
Q Consensus 28 ~WEFDp~-------~GtpEE~a~VE~aR~~F~~ 53 (77)
.||.|+- .|.|- .--+.+||++|.+
T Consensus 27 ~WEdD~~q~~~pd~~~G~N-~~SL~eAr~ny~~ 58 (78)
T PF14206_consen 27 FWEDDGVQLRDPDYYGGAN-HMSLNEARENYKK 58 (78)
T ss_pred CcccCCccccCCcccCCCC-HHHHHHHHHHHHH
Confidence 4887753 13333 5678899999986
No 38
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=31.86 E-value=79 Score=17.90 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhccCccCCchhHH
Q 048049 43 EVEGARLNYFNNRFNVKNSSNLI 65 (77)
Q Consensus 43 ~VE~aR~~F~~nRf~~K~SsDLL 65 (77)
+|++-|+.|-.|+...+.+.-.+
T Consensus 15 ~v~~r~~~~G~N~l~~~~~~s~~ 37 (64)
T smart00831 15 EAARRLERYGPNELPPPKKRSPL 37 (64)
T ss_pred HHHHHHHHhCCCCCCCCCCCCHH
Confidence 49999999999999877544333
No 39
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=31.50 E-value=19 Score=21.11 Aligned_cols=12 Identities=33% Similarity=0.960 Sum_probs=9.7
Q ss_pred eEeCCCCCCHHH
Q 048049 29 WEFDPDADSPEE 40 (77)
Q Consensus 29 WEFDp~~GtpEE 40 (77)
|.|||..|.|++
T Consensus 9 yvYd~~~Gd~~~ 20 (47)
T PF00301_consen 9 YVYDPEKGDPEN 20 (47)
T ss_dssp BEEETTTBBGGG
T ss_pred EEEcCCcCCccc
Confidence 789999987754
No 40
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=31.26 E-value=34 Score=17.55 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHHH
Q 048049 35 ADSPEELAEVEGARLNY 51 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F 51 (77)
.|||+|...=+++++.|
T Consensus 5 ~G~p~~i~~n~~V~~aY 21 (23)
T PF12399_consen 5 EGTPEEIRANPEVREAY 21 (23)
T ss_pred EcCHHHHhcCHHHHHhh
Confidence 38999987766666654
No 41
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=30.68 E-value=65 Score=19.29 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
.-|||+++++...+.+|...
T Consensus 41 ~Lt~eQ~~~l~~~~~~~~~~ 60 (125)
T PF13801_consen 41 NLTPEQQAKLRALMDEFRQE 60 (125)
T ss_dssp -TTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999988763
No 42
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=29.41 E-value=84 Score=15.73 Aligned_cols=34 Identities=12% Similarity=-0.039 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHhhcc-------CccCCchhHHHHHHH
Q 048049 37 SPEELAEVEGARLNYFNNR-------FNVKNSSNLIWQIQV 70 (77)
Q Consensus 37 tpEE~a~VE~aR~~F~~nR-------f~~K~SsDLLmR~Q~ 70 (77)
|+||...+..+-..|-.++ +..|...|+..|+..
T Consensus 5 t~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~ 45 (49)
T smart00717 5 TEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNN 45 (49)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 7889888888888887333 333666666665543
No 43
>PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised. It is about 130 amino acids in length and is found C-terminal to PF01522 from PFAM. It contains two completely conserved residues (P and H) that may be functionally important.
Probab=29.14 E-value=25 Score=24.17 Aligned_cols=9 Identities=67% Similarity=1.416 Sum_probs=7.0
Q ss_pred eeEeCCCCC
Q 048049 28 IWEFDPDAD 36 (77)
Q Consensus 28 ~WEFDp~~G 36 (77)
=|||||+.-
T Consensus 82 PwE~dp~qp 90 (133)
T PF11959_consen 82 PWEFDPDQP 90 (133)
T ss_pred ceecCCCCc
Confidence 499999853
No 44
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=29.05 E-value=37 Score=27.27 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=16.7
Q ss_pred CCccee--eeeEeCCCCCCHHHHHHHHHHH
Q 048049 21 NNHVGR--QIWEFDPDADSPEELAEVEGAR 48 (77)
Q Consensus 21 Nn~vGR--Q~WEFDp~~GtpEE~a~VE~aR 48 (77)
+..+|| |.|+||-..-+- +.+|-.||
T Consensus 163 ~p~Ig~~~q~~~~~~~~~sf--~~eIa~AR 190 (300)
T COG0774 163 HPAIGRQWQSFEFDFSAESF--RKEIARAR 190 (300)
T ss_pred CcccCCcceeEEEecchHHH--HHHhhhhh
Confidence 446999 999999763322 23455555
No 45
>smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases. GEF specific for Galpha_i proteins
Probab=28.77 E-value=34 Score=18.34 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=7.5
Q ss_pred hHHHHHHHh
Q 048049 63 NLIWQIQVI 71 (77)
Q Consensus 63 DLLmR~Q~~ 71 (77)
|||+|+|-.
T Consensus 6 elL~r~Qs~ 14 (26)
T smart00390 6 DLLLRMQSS 14 (26)
T ss_pred HHHHHHHhh
Confidence 799999964
No 46
>COG1773 Rubredoxin [Energy production and conversion]
Probab=28.51 E-value=26 Score=21.58 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=8.5
Q ss_pred eEeCCCCCCHH
Q 048049 29 WEFDPDADSPE 39 (77)
Q Consensus 29 WEFDp~~GtpE 39 (77)
|.|||+.|-|+
T Consensus 11 ~vYd~e~Gdp~ 21 (55)
T COG1773 11 YVYDPEKGDPR 21 (55)
T ss_pred eEeccccCCcc
Confidence 88999877654
No 47
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=28.31 E-value=81 Score=20.87 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=19.5
Q ss_pred CCCCCCHHHH-----HHHHHHHHHHhhccCc
Q 048049 32 DPDADSPEEL-----AEVEGARLNYFNNRFN 57 (77)
Q Consensus 32 Dp~~GtpEE~-----a~VE~aR~~F~~nRf~ 57 (77)
..+.||||+. +.+.+.+.+|..|+-.
T Consensus 19 ~~dtgs~evq~a~Lt~ri~~L~~Hlk~hkKD 49 (89)
T COG0184 19 EVDTGSGEVQLALLTERINNLTEHLKEHKKD 49 (89)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 5567888775 4678889999988754
No 48
>CHL00027 rps15 ribosomal protein S15
Probab=27.66 E-value=92 Score=20.70 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=15.5
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Q 048049 30 EFDPDADSPEELAEVEGARLNYF 52 (77)
Q Consensus 30 EFDp~~GtpEE~a~VE~aR~~F~ 52 (77)
|.+.|.||||-+.++=-+|-++-
T Consensus 14 ~~~~DTGS~evQiA~LT~rI~~L 36 (90)
T CHL00027 14 EKEENRGSVEFQVFSFTNKIRRL 36 (90)
T ss_pred cCCCCCCChHHHHHHHHHHHHHH
Confidence 56788999998866544444433
No 49
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=27.60 E-value=11 Score=31.71 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=18.3
Q ss_pred HhhccCccCCchhHHHHHHHhh
Q 048049 51 YFNNRFNVKNSSNLIWQIQVIC 72 (77)
Q Consensus 51 F~~nRf~~K~SsDLLmR~Q~~~ 72 (77)
+---||..|...|-+||+|..+
T Consensus 382 sGh~RFtYk~~edG~mRLqt~r 403 (467)
T KOG3608|consen 382 SGHKRFTYKVDEDGFMRLQTTR 403 (467)
T ss_pred CCCCceeeeeccCceeeeeeee
Confidence 4456899999999999999743
No 50
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=25.86 E-value=29 Score=27.38 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.0
Q ss_pred eeEeCCCCCCHH
Q 048049 28 IWEFDPDADSPE 39 (77)
Q Consensus 28 ~WEFDp~~GtpE 39 (77)
-|.||+.+|..|
T Consensus 90 gW~FD~~aG~~E 101 (271)
T PF11453_consen 90 GWRFDTAAGREE 101 (271)
T ss_pred CceecHHHHHHH
Confidence 399999999665
No 51
>PF09252 Feld-I_B: Allergen Fel d I-B chain; InterPro: IPR015332 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans. The nomenclature system uses the first three letters of the genus, followed by the first letter of the species name, followed by a number (additional letters can be added to the name as required to discriminate between similar designations). Fel d 1 is allergen 1 from Felis silvestris catus (Cat), which is an important agent in human allergic reactions []. The protein is expressed in saliva and sebaceous glands. The complete primary structure of Fel d 1 has been determined []. The allergen is tetrameric glycoprotein consisting of two disulphide-linked heterodimers of chains 1 and 2, which have been shown to be encoded by different genes. Fel d 1 chains 1 and 2 share structural similarity with uteroglobin, a secretoglobin superfamily member; chain 2 is a glycoprotein with N-linked oligosaccharides. This entry represents Fel d 1 chain 2.; GO: 0005615 extracellular space; PDB: 1ZKR_B 1PUO_B 2EJN_B.
Probab=25.64 E-value=45 Score=21.40 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHhhccCccC
Q 048049 35 ADSPEELAEVEGARLNYFNNRFNVK 59 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~nRf~~K 59 (77)
..|++|+++.|+...=|.++....|
T Consensus 27 naT~~E~~AfeKIQdCynE~Glk~K 51 (67)
T PF09252_consen 27 NATDEEKEAFEKIQDCYNEEGLKAK 51 (67)
T ss_dssp T--HHHHHHHHHHHHHHHHCCHHHH
T ss_pred cCChHHHHHHHHHHHHHhccCchhh
Confidence 4799999999999999998876655
No 52
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=24.98 E-value=65 Score=23.45 Aligned_cols=18 Identities=44% Similarity=0.649 Sum_probs=14.6
Q ss_pred eCCCCCCHHHHHHHHHHH
Q 048049 31 FDPDADSPEELAEVEGAR 48 (77)
Q Consensus 31 FDp~~GtpEE~a~VE~aR 48 (77)
+|++.+||+++++|++.=
T Consensus 15 iD~~~~~~~~~~~a~~lI 32 (221)
T PF05700_consen 15 IDPDYDTPEERQAAEALI 32 (221)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 588888999998887654
No 53
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=24.53 E-value=35 Score=23.68 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=12.5
Q ss_pred cceeeeeEeCCCCCCH
Q 048049 23 HVGRQIWEFDPDADSP 38 (77)
Q Consensus 23 ~vGRQ~WEFDp~~Gtp 38 (77)
|.|.|.|.||....+.
T Consensus 116 Fkg~~y~ry~~~~~~v 131 (194)
T cd00094 116 FKGDKYWRYDEKTQKM 131 (194)
T ss_pred EeCCEEEEEeCCCccc
Confidence 4699999999865543
No 54
>PF13964 Kelch_6: Kelch motif
Probab=24.40 E-value=52 Score=17.75 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=10.6
Q ss_pred eeeeEeCCCCCCHH
Q 048049 26 RQIWEFDPDADSPE 39 (77)
Q Consensus 26 RQ~WEFDp~~GtpE 39 (77)
..+|.|||...+=+
T Consensus 28 ~~v~~yd~~t~~W~ 41 (50)
T PF13964_consen 28 NDVERYDPETNTWE 41 (50)
T ss_pred ccEEEEcCCCCcEE
Confidence 47899999877533
No 55
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=24.19 E-value=58 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.702 Sum_probs=16.4
Q ss_pred CCceeccCCcceeeeeEeCC
Q 048049 14 DPYIFSTNNHVGRQIWEFDP 33 (77)
Q Consensus 14 ~p~L~S~Nn~vGRQ~WEFDp 33 (77)
...|.+.+.--..|.|.|++
T Consensus 68 ~i~l~~C~~~~~~Q~W~~~~ 87 (124)
T PF00652_consen 68 KIVLWPCDSNSSNQRWKFDP 87 (124)
T ss_dssp BEEEEETTTTGGGGBEEEET
T ss_pred eEEEeeccCCccCCeEEEcC
Confidence 35788888866679999998
No 56
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=23.44 E-value=49 Score=20.79 Aligned_cols=9 Identities=22% Similarity=0.198 Sum_probs=7.3
Q ss_pred CCCHHHHHH
Q 048049 35 ADSPEELAE 43 (77)
Q Consensus 35 ~GtpEE~a~ 43 (77)
.||++|||+
T Consensus 32 GGTl~ERA~ 40 (60)
T PF13297_consen 32 GGTLQERAA 40 (60)
T ss_pred CCCHHHHHH
Confidence 489999875
No 57
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=23.07 E-value=98 Score=22.09 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCc
Q 048049 33 PDADSPEELAEVEGARLNYFNNRFN 57 (77)
Q Consensus 33 p~~GtpEE~a~VE~aR~~F~~nRf~ 57 (77)
|-+.||+++++|+..=+.|...|-+
T Consensus 27 p~tysp~~l~~i~~~~~~i~~~~~r 51 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAEGIEAAKDR 51 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6678999999998888888776644
No 58
>PF04591 DUF596: Protein of unknown function, DUF596; InterPro: IPR007670 This family contains several uncharacterised proteins.; PDB: 2O5H_B.
Probab=23.03 E-value=68 Score=20.65 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 048049 35 ADSPEELAEVEGARLNYFN 53 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~ 53 (77)
.||+|| +||.-|+.|-+
T Consensus 16 ~Gt~eE--qve~fr~~fP~ 32 (70)
T PF04591_consen 16 EGTTEE--QVEMFRKSFPA 32 (70)
T ss_dssp ---HHH--HHHHHHHH--S
T ss_pred cCCHHH--HHHHHHHHCCC
Confidence 489998 89999998865
No 59
>PF04802 SMK-1: Component of IIS longevity pathway SMK-1; InterPro: IPR006887 This is a conserved region which characterises a number of eukaryotic proteins of unknown function.
Probab=23.02 E-value=1e+02 Score=22.52 Aligned_cols=41 Identities=22% Similarity=0.512 Sum_probs=23.7
Q ss_pred eeEeCCCCCCHHHHHHHHHHHHHHhhccCccC-----CchhH------HHHHHHhhhh
Q 048049 28 IWEFDPDADSPEELAEVEGARLNYFNNRFNVK-----NSSNL------IWQIQVICVI 74 (77)
Q Consensus 28 ~WEFDp~~GtpEE~a~VE~aR~~F~~nRf~~K-----~SsDL------LmR~Q~~~~~ 74 (77)
+=||||+...+. | + -++|-+.+-+.| +++++ .-|+||+++|
T Consensus 60 ~LEYDp~~~~~k--a---~-hR~fL~~~~~FkeVIpi~~~~l~~kIhqtyRlqYLkDv 111 (193)
T PF04802_consen 60 ILEYDPEFPQPK--A---N-HREFLKEKAKFKEVIPIPDPELLSKIHQTYRLQYLKDV 111 (193)
T ss_pred hhccCCcccccc--c---c-hHHHHHhCCCCceeeecCCHHHHHHHHHHHhHHHHHHH
Confidence 569999976533 1 1 345555543333 34555 3578887765
No 60
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=22.96 E-value=46 Score=18.08 Aligned_cols=12 Identities=33% Similarity=0.972 Sum_probs=9.2
Q ss_pred eeeeEeCCCCCC
Q 048049 26 RQIWEFDPDADS 37 (77)
Q Consensus 26 RQ~WEFDp~~Gt 37 (77)
-.+|.||++.++
T Consensus 19 nd~~~~~~~~~~ 30 (49)
T PF13415_consen 19 NDVWVFDLDTNT 30 (49)
T ss_pred cCEEEEECCCCE
Confidence 378999988764
No 61
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=1.1e+02 Score=25.09 Aligned_cols=28 Identities=39% Similarity=0.650 Sum_probs=20.0
Q ss_pred CcceeeeeEeCCC-------------CCCHHHHHHHHHHHH
Q 048049 22 NHVGRQIWEFDPD-------------ADSPEELAEVEGARL 49 (77)
Q Consensus 22 n~vGRQ~WEFDp~-------------~GtpEE~a~VE~aR~ 49 (77)
+--||-+|-||-- +.+||=+..||+.++
T Consensus 39 ~~kgR~YWYfd~p~~~g~~krrYvGp~ddpei~~rv~~~K~ 79 (349)
T COG5397 39 DRKGRVYWYFDTPDGGGGRKRRYVGPADDPEIAQRVERHKA 79 (349)
T ss_pred ccCCceEEEEecCCCCCCceecccCCCCCHHHHHHHHHHHH
Confidence 6689999999832 346676677777654
No 62
>PF13308 YARHG: YARHG domain
Probab=22.66 E-value=54 Score=20.48 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=19.3
Q ss_pred cCCcceeeeeEeCCCC----CCHHHHHHHHHHHH
Q 048049 20 TNNHVGRQIWEFDPDA----DSPEELAEVEGARL 49 (77)
Q Consensus 20 ~Nn~vGRQ~WEFDp~~----GtpEE~a~VE~aR~ 49 (77)
.+++-+.+.| |.|.. -|+.|++-|+..++
T Consensus 46 l~~yF~~~~W-Y~~~~~~~~l~~~E~~ni~~i~~ 78 (81)
T PF13308_consen 46 LQAYFSSKSW-YKPEYSDSVLNEIEKANIDLIKK 78 (81)
T ss_pred HHHHHcCCCc-cCCCcccCCCCHHHHHHHHHHHH
Confidence 3556667777 44444 68888888877654
No 63
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=22.45 E-value=43 Score=17.57 Aligned_cols=10 Identities=30% Similarity=1.165 Sum_probs=6.6
Q ss_pred eeeeeEeCCC
Q 048049 25 GRQIWEFDPD 34 (77)
Q Consensus 25 GRQ~WEFDp~ 34 (77)
|.+.|.|+-.
T Consensus 1 G~~~W~~~~~ 10 (40)
T PF13570_consen 1 GKVLWSYDTG 10 (40)
T ss_dssp S-EEEEEE-S
T ss_pred CceeEEEECC
Confidence 7889999754
No 64
>COG5474 Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=82 Score=23.27 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.8
Q ss_pred eeEeCCCCCCHHHHHHHHHHHHHHhh
Q 048049 28 IWEFDPDADSPEELAEVEGARLNYFN 53 (77)
Q Consensus 28 ~WEFDp~~GtpEE~a~VE~aR~~F~~ 53 (77)
+-+||-+-|.|-|+.+|-+.|.-|..
T Consensus 45 ~i~y~~e~gDpRELsEIPEvRlWF~r 70 (159)
T COG5474 45 IIGYDDEPGDPRELSEIPEVRLWFKR 70 (159)
T ss_pred EEeccCCCCChHHhhhchHHHHHHHH
Confidence 34789889999999999999999864
No 65
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=17 Score=27.20 Aligned_cols=27 Identities=26% Similarity=0.694 Sum_probs=21.4
Q ss_pred cCCcceeeeeEe-------CCCCCCHHHHHHHHH
Q 048049 20 TNNHVGRQIWEF-------DPDADSPEELAEVEG 46 (77)
Q Consensus 20 ~Nn~vGRQ~WEF-------Dp~~GtpEE~a~VE~ 46 (77)
+++-+||-+|.| =|+.-||||+...-.
T Consensus 69 ~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~s 102 (177)
T KOG3355|consen 69 DKEELGRSTWTLLHTLAANYPDRPTPEQKDDMRS 102 (177)
T ss_pred hHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHH
Confidence 567799999987 688999999765433
No 66
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.66 E-value=92 Score=23.47 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=19.8
Q ss_pred eeEeC-CCCCCHHHHHHHHHHHHHHhhccCc
Q 048049 28 IWEFD-PDADSPEELAEVEGARLNYFNNRFN 57 (77)
Q Consensus 28 ~WEFD-p~~GtpEE~a~VE~aR~~F~~nRf~ 57 (77)
+=-|| ++....+|.+..-++.+.|..+|+.
T Consensus 61 v~yFD~~dls~e~e~~~~kkl~~~f~~~~~~ 91 (184)
T COG3575 61 VIYFDDADLSYEAEAALEKKLAEQFPQLRYP 91 (184)
T ss_pred EEEecCcccChHHHHHHHHHHHHhccCCCCc
Confidence 34589 4444445556666789999986643
No 67
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=21.58 E-value=50 Score=27.89 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=12.1
Q ss_pred EeCCCCCCHHHHHH
Q 048049 30 EFDPDADSPEELAE 43 (77)
Q Consensus 30 EFDp~~GtpEE~a~ 43 (77)
.-||++-|+||+|+
T Consensus 291 avDp~aPTeEE~aq 304 (458)
T KOG1621|consen 291 AVDPDAPTEEERAQ 304 (458)
T ss_pred ccCCCCCCHHHhhc
Confidence 45999999999986
No 68
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=1.1e+02 Score=20.28 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 048049 35 ADSPEELAEVEGARLNYFN 53 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~ 53 (77)
.-|+||..+-+..|++|-+
T Consensus 20 gLTeeEk~eQ~~LR~eYl~ 38 (77)
T COG4224 20 GLTEEEKKEQAKLRREYLE 38 (77)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3589999999999999875
No 69
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=21.52 E-value=1.3e+02 Score=17.61 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.4
Q ss_pred eeeeEeCCCCCCHHHHHHHHH
Q 048049 26 RQIWEFDPDADSPEELAEVEG 46 (77)
Q Consensus 26 RQ~WEFDp~~GtpEE~a~VE~ 46 (77)
-+++-|||-. |+.|++-++.
T Consensus 35 ~~v~~yDPvf-t~~d~~~L~~ 54 (56)
T PF07985_consen 35 DQVSIYDPVF-TEVDKAFLES 54 (56)
T ss_pred CcEEEECCCC-CHHHHHHHHH
Confidence 5899999986 6777776654
No 70
>PF11178 DUF2963: Protein of unknown function (DUF2963); InterPro: IPR021348 This family of proteins with unknown function appears to be restricted to Mollicutes.
Probab=21.50 E-value=56 Score=19.18 Aligned_cols=12 Identities=33% Similarity=0.590 Sum_probs=9.3
Q ss_pred eeeeEeCCCCCC
Q 048049 26 RQIWEFDPDADS 37 (77)
Q Consensus 26 RQ~WEFDp~~Gt 37 (77)
..+.||||..|.
T Consensus 9 ~~I~eydp~Tg~ 20 (51)
T PF11178_consen 9 DYITEYDPQTGK 20 (51)
T ss_pred EEEEEECcccCc
Confidence 467899998774
No 71
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=21.24 E-value=82 Score=18.30 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHHHHHh
Q 048049 36 DSPEELAEVEGARLNYF 52 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~ 52 (77)
-|++++++++.+|++|-
T Consensus 16 L~~~q~~~m~wvr~~ym 32 (51)
T PF06955_consen 16 LSAKQRRQMRWVRRNYM 32 (51)
T ss_dssp --HHHHHHHHHHHHHCE
T ss_pred CCHHHHHHHHHHHHcCe
Confidence 47899999999999874
No 72
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=21.21 E-value=58 Score=26.14 Aligned_cols=19 Identities=47% Similarity=0.802 Sum_probs=15.7
Q ss_pred eeEeCCCCCCHHHHHHHHHH
Q 048049 28 IWEFDPDADSPEELAEVEGA 47 (77)
Q Consensus 28 ~WEFDp~~GtpEE~a~VE~a 47 (77)
-||+-|+.| .||.++||+-
T Consensus 151 g~~~~~~~~-~eE~eEVe~e 169 (294)
T KOG2881|consen 151 GWEMSPSEG-QEELEEVEAE 169 (294)
T ss_pred hhcCCCccc-hhhHHHHHHH
Confidence 499999988 8888888764
No 73
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=20.90 E-value=75 Score=16.92 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=12.1
Q ss_pred eeccCCcceeee-eEeCCC
Q 048049 17 IFSTNNHVGRQI-WEFDPD 34 (77)
Q Consensus 17 L~S~Nn~vGRQ~-WEFDp~ 34 (77)
|.+.-...|+.+ |+||+.
T Consensus 7 l~~~~d~~G~~~~y~YD~~ 25 (38)
T PF05593_consen 7 LTSVTDPDGRTTRYTYDAA 25 (38)
T ss_pred EEEEEcCCCCEEEEEECCC
Confidence 333336677777 999986
No 74
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=20.74 E-value=98 Score=21.67 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHhhccC
Q 048049 37 SPEELAEVEGARLNYFNNRF 56 (77)
Q Consensus 37 tpEE~a~VE~aR~~F~~nRf 56 (77)
|||| |+..|+.|+...-
T Consensus 12 S~~e---I~~LR~QF~~~~~ 28 (140)
T PF13373_consen 12 SPEE---IQDLRSQFHSIYG 28 (140)
T ss_pred CHHH---HHHHHHHHHHHhc
Confidence 6665 9999999998764
No 75
>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.
Probab=20.65 E-value=1.6e+02 Score=18.43 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=17.5
Q ss_pred CCCCCHHHHH-----HHHHHHHHHhhccCc
Q 048049 33 PDADSPEELA-----EVEGARLNYFNNRFN 57 (77)
Q Consensus 33 p~~GtpEE~a-----~VE~aR~~F~~nRf~ 57 (77)
.|.||+|... .|...+.++..|+-.
T Consensus 14 ~DtGs~evQia~LT~rI~~L~~Hl~~~~KD 43 (80)
T cd00353 14 GDTGSPEVQLALLTERIVNLTEHLEKNKKD 43 (80)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3689998874 467777777776643
No 76
>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A.
Probab=20.44 E-value=94 Score=18.54 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
+-.|+||++|-..|+.|.++
T Consensus 24 ~LPp~qR~~I~~Lr~ql~~~ 43 (46)
T PF14304_consen 24 ALPPDQRQQILQLRQQLMRG 43 (46)
T ss_dssp TS-HHHHTHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHHHhc
Confidence 34689999999999988653
No 77
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=20.38 E-value=19 Score=30.67 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEeCCC-CCCHHHHHHHHHHHHHHhhcc
Q 048049 29 WEFDPD-ADSPEELAEVEGARLNYFNNR 55 (77)
Q Consensus 29 WEFDp~-~GtpEE~a~VE~aR~~F~~nR 55 (77)
.+||.- -||||||+..+++-.++.+.|
T Consensus 426 ~q~DevYvgt~eer~~~~~~d~~~~~~~ 453 (512)
T PF03842_consen 426 FQYDEVYVGTAEERAANDKADKEMHSGA 453 (512)
T ss_pred CCccceEeCCHHHhhcccCCccccccCc
Confidence 345665 499999999888877777553
No 78
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=20.35 E-value=1.1e+02 Score=17.89 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=21.8
Q ss_pred eeeeeEeC-CC---------CCCHHHHHHHHHHHHHHhhccCccCCchhHH
Q 048049 25 GRQIWEFD-PD---------ADSPEELAEVEGARLNYFNNRFNVKNSSNLI 65 (77)
Q Consensus 25 GRQ~WEFD-p~---------~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLL 65 (77)
|..+-.|+ |+ ...|++++++-++=+.+...+|..++-.+-|
T Consensus 40 ~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t~~~~~~~i 90 (92)
T PF13524_consen 40 GEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKRHTWEHRAEQI 90 (92)
T ss_pred CCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 55666664 21 2455566555444445556566655544433
No 79
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=20.28 E-value=1.7e+02 Score=21.15 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=24.1
Q ss_pred eEeCCCCCCHHHHHHHHHHHHHHhhc---cCccC
Q 048049 29 WEFDPDADSPEELAEVEGARLNYFNN---RFNVK 59 (77)
Q Consensus 29 WEFDp~~GtpEE~a~VE~aR~~F~~n---Rf~~K 59 (77)
++||++. ++.+++.|.+|=+.+.++ ||..+
T Consensus 8 Y~i~~~~-~~~~~~~I~~A~~~~~~~TCirF~~~ 40 (182)
T cd04283 8 YVISPQY-SENERAVIEKAMQEFETLTCVRFVPR 40 (182)
T ss_pred EEECCCC-CHHHHHHHHHHHHHHHhCCceeeEEC
Confidence 6888876 578899999999998776 67544
No 80
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.13 E-value=1.5e+02 Score=17.25 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhccCccCCchhHHHH
Q 048049 42 AEVEGARLNYFNNRFNVKNSSNLIWQ 67 (77)
Q Consensus 42 a~VE~aR~~F~~nRf~~K~SsDLLmR 67 (77)
++|++-|+.|-.|.+..+...-++.+
T Consensus 24 ~ev~~r~~~~G~N~l~~~~~~s~~~~ 49 (69)
T PF00690_consen 24 EEVEERRKKYGPNELPEPKKKSLWRI 49 (69)
T ss_dssp HHHHHHHHHHSSSSTTTTTSSSHHHH
T ss_pred HHHHHHHHhcccccccccccCcHHHH
Confidence 46999999999999965555444443
Done!