Query 048049
Match_columns 77
No_of_seqs 101 out of 172
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 09:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j8p_A Cleavage stimulation fa 53.5 7.9 0.00027 22.5 2.0 20 35-54 26-45 (49)
2 3bhp_A UPF0291 protein YNZC; N 53.5 10 0.00035 22.9 2.6 20 35-54 21-40 (60)
3 2jvd_A UPF0291 protein YNZC; s 53.5 11 0.00037 22.4 2.6 20 35-54 21-40 (54)
4 3q8g_A CRAL-TRIO domain-contai 51.9 20 0.00068 25.9 4.4 34 35-68 34-67 (320)
5 1r44_A D-alanyl-D-alanine dipe 50.4 6.9 0.00024 27.7 1.7 35 18-52 22-58 (202)
6 3oyo_A Hemopexin fold protein 47.1 6.4 0.00022 27.5 1.1 16 23-38 186-201 (225)
7 1aua_A Phosphatidylinositol tr 41.3 29 0.001 24.0 3.7 33 36-68 26-58 (296)
8 2hep_A UPF0291 protein YNZC; S 40.5 20 0.00069 22.9 2.6 19 36-54 22-40 (85)
9 3jsz_A LGT1, putative uncharac 40.0 13 0.00043 30.5 1.9 51 13-65 125-177 (525)
10 1w6k_A Lanosterol synthase; cy 38.4 15 0.00052 29.9 2.1 8 25-32 32-39 (732)
11 3c7x_A Matrix metalloproteinas 38.0 5.5 0.00019 27.2 -0.5 15 23-37 115-129 (196)
12 3lay_A Zinc resistance-associa 35.8 23 0.00078 24.6 2.4 22 36-57 68-89 (175)
13 3cqv_A Nuclear receptor subfam 35.5 23 0.00079 23.3 2.3 43 31-73 132-183 (199)
14 2og0_A Excisionase; protein-DN 34.7 12 0.00041 21.5 0.7 11 24-35 37-47 (52)
15 2ffu_A Ppgalnact-2, polypeptid 33.2 23 0.00078 26.2 2.2 25 12-36 435-459 (501)
16 3gwl_A P14, FAD-linked sulfhyd 30.7 19 0.00065 22.8 1.2 32 23-54 6-44 (106)
17 2bf9_A Pancreatic hormone; tur 29.4 61 0.0021 17.9 3.0 20 34-53 10-29 (36)
18 2ki0_A DS119; beta-alpha-beta, 28.3 36 0.0012 18.7 2.0 15 26-44 6-20 (36)
19 2j49_A Transcription initiatio 27.6 24 0.00082 23.6 1.4 32 36-68 81-115 (148)
20 2j4b_A TAF5, transcription ini 26.9 28 0.00094 22.9 1.6 32 36-68 79-113 (138)
21 3h8k_B Autocrine motility fact 26.5 67 0.0023 16.6 2.7 17 37-53 2-27 (28)
22 1pm6_A Excisionase; antiparall 26.4 20 0.00067 21.8 0.7 11 24-35 37-47 (72)
23 1fth_A ACPS, acyl carrier prot 26.4 12 0.00042 23.0 -0.3 26 36-61 32-61 (122)
24 4rxn_A Rubredoxin; electron tr 26.1 23 0.00078 20.5 0.9 12 29-40 11-22 (54)
25 1itv_A MMP9; adaptive molecula 25.8 13 0.00043 25.3 -0.3 15 23-37 115-129 (195)
26 2lqt_A Coiled-coil-helix-coile 25.6 45 0.0015 21.3 2.3 16 32-47 64-79 (85)
27 3iwj_A Putative aminoaldehyde 25.3 2.3E+02 0.0078 21.6 6.6 39 14-54 22-61 (503)
28 1urf_A Protein kinase C-like 1 24.7 32 0.0011 21.9 1.5 35 35-74 36-70 (81)
29 1pex_A Collagenase-3, MMP-13; 24.6 14 0.00046 25.5 -0.3 14 23-36 133-146 (207)
30 1xhb_A Polypeptide N-acetylgal 24.3 42 0.0014 24.3 2.3 25 12-36 402-426 (472)
31 1xvp_B Orphan nuclear receptor 24.0 94 0.0032 20.9 3.9 42 31-72 166-218 (246)
32 1gen_A Gelatinase A; hydrolase 23.9 20 0.0007 24.7 0.5 15 23-37 141-155 (218)
33 3oc5_A Toxin coregulated pilus 22.8 30 0.001 26.8 1.2 17 18-34 258-274 (318)
34 1g0d_A Protein-glutamine gamma 22.7 36 0.0012 28.7 1.8 34 16-49 411-458 (695)
35 3hym_A Anaphase-promoting comp 22.4 35 0.0012 18.0 1.1 16 36-51 11-26 (29)
36 2a98_A Inositol 1,4,5-trisphos 22.2 27 0.00093 25.5 0.9 12 32-43 94-105 (259)
37 3h1t_A Type I site-specific re 21.7 70 0.0024 24.0 3.1 28 14-44 116-152 (590)
38 1rpb_A Tricyclic peptide RP 71 21.7 25 0.00086 18.2 0.4 10 17-26 4-13 (26)
39 2y39_A Nickel and cobalt resis 21.4 60 0.0021 21.6 2.4 27 29-55 14-40 (118)
40 2wbq_A L-arginine beta-hydroxy 21.4 75 0.0026 22.7 3.1 33 19-54 15-47 (358)
41 3lp9_A LS-24; SEED albumin, pl 20.9 19 0.00066 25.0 -0.1 14 23-36 189-202 (227)
42 1vju_A Coproporphyrinogen III 20.9 31 0.001 26.6 0.9 24 15-41 272-297 (309)
43 1bba_A Bovine pancreatic polyp 20.8 76 0.0026 17.5 2.3 20 34-53 10-29 (36)
44 1l8n_A Alpha-D-glucuronidase; 20.5 20 0.0007 30.2 -0.1 40 24-67 465-504 (679)
45 4aie_A Glucan 1,6-alpha-glucos 20.2 70 0.0024 23.4 2.7 22 28-49 69-91 (549)
46 1f7l_A Holo-(acyl carrier prot 20.1 16 0.00055 22.2 -0.6 25 36-60 30-58 (121)
No 1
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=53.53 E-value=7.9 Score=22.49 Aligned_cols=20 Identities=10% Similarity=0.003 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
.-.|+||.+|...|+.|.++
T Consensus 26 ~LPp~qR~qI~~LR~q~~~~ 45 (49)
T 2j8p_A 26 MLPPEQRQSILILKEQIQKS 45 (49)
T ss_dssp TSCHHHHTHHHHHHHHHHCC
T ss_pred hCCHHHHHHHHHHHHHHHhc
Confidence 34689999999999999764
No 2
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=53.52 E-value=10 Score=22.89 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
.-|+||.++-...|++|-++
T Consensus 21 gLT~eEk~EQ~~LR~eYl~~ 40 (60)
T 3bhp_A 21 VITEEEKAEQQKLRQEYLKG 40 (60)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999764
No 3
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=53.45 E-value=11 Score=22.39 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 048049 35 ADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~n 54 (77)
.-|+||.++-...|++|-++
T Consensus 21 gLT~eEk~EQ~~LR~eYl~~ 40 (54)
T 2jvd_A 21 VITEEEKAEQQKLRQEYLKG 40 (54)
T ss_dssp CCCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35999999999999999875
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=51.88 E-value=20 Score=25.89 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHHhhccCccCCchhHHHHH
Q 048049 35 ADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQI 68 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~ 68 (77)
.-|++|.+.|++.|+...++-...+.+...|.|+
T Consensus 34 ~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRF 67 (320)
T 3q8g_A 34 NLTKEQEEALLQFRSILLEKNYKERLDDSTLLRF 67 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 3689999999999999998876555666677775
No 5
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=50.42 E-value=6.9 Score=27.72 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=25.0
Q ss_pred eccCCcceeeeeEeC-CC-CCCHHHHHHHHHHHHHHh
Q 048049 18 FSTNNHVGRQIWEFD-PD-ADSPEELAEVEGARLNYF 52 (77)
Q Consensus 18 ~S~Nn~vGRQ~WEFD-p~-~GtpEE~a~VE~aR~~F~ 52 (77)
.|+|||+||.+=.|+ |. ..+++-.+++.+|.+...
T Consensus 22 at~~Nf~g~~v~gY~~~~~~Lr~~aa~aL~~aq~~L~ 58 (202)
T 1r44_A 22 ATWDNFTGKPVDGYEVNRIVGTYELAESLLKAKELAA 58 (202)
T ss_dssp GSSCSTTSSCCTTBCSSSCEEEHHHHHHHHHHHHHTT
T ss_pred ccCcccCCCcCCCcCCCcEEECHHHHHHHHHHHHHHH
Confidence 489999999984444 33 367777777777777654
No 6
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=47.15 E-value=6.4 Score=27.53 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.0
Q ss_pred cceeeeeEeCCCCCCH
Q 048049 23 HVGRQIWEFDPDADSP 38 (77)
Q Consensus 23 ~vGRQ~WEFDp~~Gtp 38 (77)
|.|.|+|.||+..|++
T Consensus 186 FkG~~ywr~d~~~g~~ 201 (225)
T 3oyo_A 186 FKGQNYVRIDFTPGGK 201 (225)
T ss_dssp EETTEEEEEECCTTCG
T ss_pred EECCEEEEEeCCcCCc
Confidence 4599999999996643
No 7
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=41.26 E-value=29 Score=23.97 Aligned_cols=33 Identities=6% Similarity=-0.008 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHhhccCccCCchhHHHHH
Q 048049 36 DSPEELAEVEGARLNYFNNRFNVKNSSNLIWQI 68 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~ 68 (77)
-|++|.+.|++.|+...++-+..+.+...|.|+
T Consensus 26 l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRF 58 (296)
T 1aua_A 26 LDSAQEKALAELRKLLEDAGFIERLDDSTLLRF 58 (296)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHH
Confidence 378899999999999998765555555667665
No 8
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=40.47 E-value=20 Score=22.89 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHHhhc
Q 048049 36 DSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~n 54 (77)
-|+||.++-...|++|-++
T Consensus 22 LT~eEk~EQ~~LR~eYl~~ 40 (85)
T 2hep_A 22 ITEEEKAEQQKLRQEYLKG 40 (85)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4999999999999999875
No 9
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=40.04 E-value=13 Score=30.50 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=37.5
Q ss_pred CCCceeccCCcceeeeeE-eCCCCCCH-HHHHHHHHHHHHHhhccCccCCchhHH
Q 048049 13 NDPYIFSTNNHVGRQIWE-FDPDADSP-EELAEVEGARLNYFNNRFNVKNSSNLI 65 (77)
Q Consensus 13 ~~p~L~S~Nn~vGRQ~WE-FDp~~Gtp-EE~a~VE~aR~~F~~nRf~~K~SsDLL 65 (77)
++||-++||+++ .+|= -||+.--| |-..+++++|++.-.-+++.-=||-+|
T Consensus 125 ~d~~~F~tn~~~--~IWFSn~P~~fMp~e~q~~Lle~re~nPG~~i~LVYsStlL 177 (525)
T 3jsz_A 125 SNEFKFKTNVQT--SIWFSIKPELFMPSKQQEALKRRREQYPGCKIRLIYSSSLL 177 (525)
T ss_dssp SCCEEEESSEEE--EECCCSSTTCSSCHHHHHHHHHHHHHCTTCEEEEEECSTTS
T ss_pred cCcccccCCceE--EEEEeCChhHhccHHHHHHHHHHHhhCCCCeEEEEeehhhc
Confidence 499999999998 5893 28887656 556789997777666576665555554
No 10
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=38.36 E-value=15 Score=29.90 Aligned_cols=8 Identities=50% Similarity=1.190 Sum_probs=7.3
Q ss_pred eeeeeEeC
Q 048049 25 GRQIWEFD 32 (77)
Q Consensus 25 GRQ~WEFD 32 (77)
|||+|+|-
T Consensus 32 ~~~~w~~~ 39 (732)
T 1w6k_A 32 GRQTWTYL 39 (732)
T ss_dssp TEEEEEEC
T ss_pred Cccceecc
Confidence 99999995
No 11
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=37.97 E-value=5.5 Score=27.20 Aligned_cols=15 Identities=13% Similarity=0.470 Sum_probs=11.9
Q ss_pred cceeeeeEeCCCCCC
Q 048049 23 HVGRQIWEFDPDADS 37 (77)
Q Consensus 23 ~vGRQ~WEFDp~~Gt 37 (77)
|.|.|+|.||+...+
T Consensus 115 FkG~~yw~yd~~~~~ 129 (196)
T 3c7x_A 115 FRGNKYYRFNEELRA 129 (196)
T ss_dssp EETTEEEEEETTTTE
T ss_pred EECCEEEEEeCCccc
Confidence 469999999987543
No 12
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.75 E-value=23 Score=24.64 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHhhccCc
Q 048049 36 DSPEELAEVEGARLNYFNNRFN 57 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~nRf~ 57 (77)
-|||+++++.+.|++|...+..
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~ 89 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSA 89 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999886543
No 13
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=35.45 E-value=23 Score=23.27 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=23.5
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhh-------ccCccCC--chhHHHHHHHhhh
Q 048049 31 FDPDADSPEELAEVEGARLNYFN-------NRFNVKN--SSNLIWQIQVICV 73 (77)
Q Consensus 31 FDp~~GtpEE~a~VE~aR~~F~~-------nRf~~K~--SsDLLmR~Q~~~~ 73 (77)
|+|+...-++.+.||+.|+.+.. .++...+ =++||+++.-+..
T Consensus 132 ~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~ 183 (199)
T 3cqv_A 132 VSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRS 183 (199)
T ss_dssp HTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 45554323455678888776654 2222111 2678888765443
No 14
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=34.73 E-value=12 Score=21.45 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=9.2
Q ss_pred ceeeeeEeCCCC
Q 048049 24 VGRQIWEFDPDA 35 (77)
Q Consensus 24 vGRQ~WEFDp~~ 35 (77)
+|| .|-||+++
T Consensus 37 vGr-~wrv~~~a 47 (52)
T 2og0_A 37 DGR-EYLFHESA 47 (52)
T ss_dssp ETT-EEEEETTC
T ss_pred cCC-EEEEcccc
Confidence 786 89999886
No 15
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=33.25 E-value=23 Score=26.20 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=19.5
Q ss_pred CCCCceeccCCcceeeeeEeCCCCC
Q 048049 12 KNDPYIFSTNNHVGRQIWEFDPDAD 36 (77)
Q Consensus 12 g~~p~L~S~Nn~vGRQ~WEFDp~~G 36 (77)
|....|.++|+--+.|.|.|+++.|
T Consensus 435 g~~v~l~~C~~~~~~Q~W~~~~~~~ 459 (501)
T 2ffu_A 435 GSLIKLQGCRENDSRQKWEQIEGNS 459 (501)
T ss_dssp TCBCEEEECCTTCGGGCEEEETTTT
T ss_pred CCeEEEEecCCCCcCceEEEECCCC
Confidence 4456788998877889999998555
No 16
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=30.72 E-value=19 Score=22.77 Aligned_cols=32 Identities=31% Similarity=0.329 Sum_probs=22.2
Q ss_pred cceeeeeEe-------CCCCCCHHHHHHHHHHHHHHhhc
Q 048049 23 HVGRQIWEF-------DPDADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 23 ~vGRQ~WEF-------Dp~~GtpEE~a~VE~aR~~F~~n 54 (77)
..||-+|-| =|+..|++|+.++...=..|...
T Consensus 6 ~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~ 44 (106)
T 3gwl_A 6 HWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIES 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 368888865 46677998887777765555544
No 17
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=29.41 E-value=61 Score=17.86 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 048049 34 DADSPEELAEVEGARLNYFN 53 (77)
Q Consensus 34 ~~GtpEE~a~VE~aR~~F~~ 53 (77)
+..||||+|+--.+=++|-+
T Consensus 10 ~dA~~Eela~Y~~~LrhYiN 29 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQQYLN 29 (36)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 35699999998888777754
No 18
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.31 E-value=36 Score=18.66 Aligned_cols=15 Identities=47% Similarity=0.988 Sum_probs=10.9
Q ss_pred eeeeEeCCCCCCHHHHHHH
Q 048049 26 RQIWEFDPDADSPEELAEV 44 (77)
Q Consensus 26 RQ~WEFDp~~GtpEE~a~V 44 (77)
|-+|. .|||||+..+
T Consensus 6 rtiwv----ggtpeelkkl 20 (36)
T 2ki0_A 6 RTIWV----GGTPEELKKL 20 (36)
T ss_dssp CCCCB----CCCHHHHHHH
T ss_pred EEEEe----cCCHHHHHHH
Confidence 56673 6899998654
No 19
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=27.58 E-value=24 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHHhhccCccCCc---hhHHHHH
Q 048049 36 DSPEELAEVEGARLNYFNNRFNVKNS---SNLIWQI 68 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~nRf~~K~S---sDLLmR~ 68 (77)
.+||+.++=+-|+ .|.+|+|.++=| -++|+++
T Consensus 81 ~~p~hl~~n~~~~-~fr~nKy~I~ls~~s~~lL~~f 115 (148)
T 2j49_A 81 NSIDHIKENEVAS-AFQSHKYRITMSKTTLNLLLYF 115 (148)
T ss_dssp CSHHHHHHCHHHH-HHHSSCEEEEECHHHHHHHHHH
T ss_pred CCHHHHhhCHHHH-HHHhCCeEEEECHHHHHHHHHH
Confidence 4788877777776 899999998755 4567665
No 20
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=26.93 E-value=28 Score=22.86 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHhhccCccCCc---hhHHHHH
Q 048049 36 DSPEELAEVEGARLNYFNNRFNVKNS---SNLIWQI 68 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F~~nRf~~K~S---sDLLmR~ 68 (77)
.+||+.++=+-| +.|.+|+|.++=| -++|+++
T Consensus 79 ~~~e~l~~n~~~-~~fr~nKy~I~ls~~s~~lL~~f 113 (138)
T 2j4b_A 79 YTVQHIHENNFA-YTFKNSKYHLSMGRYAFDLLINF 113 (138)
T ss_dssp CSHHHHHHCHHH-HHHHHSCEEEEEEHHHHHHHHHH
T ss_pred CCHHHHhhCHHH-HHHHhCCeEEEECHHHHHHHHHH
Confidence 468877766666 6899999998755 4566554
No 21
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=26.47 E-value=67 Score=16.59 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=10.8
Q ss_pred CHHHHHH---------HHHHHHHHhh
Q 048049 37 SPEELAE---------VEGARLNYFN 53 (77)
Q Consensus 37 tpEE~a~---------VE~aR~~F~~ 53 (77)
||+||.. |..||+.|-+
T Consensus 2 s~~eRq~~Lq~Rk~~mi~~ARrryl~ 27 (28)
T 3h8k_B 2 SADERQRMLVQRKDELLQQARKRFLN 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666643 6677777653
No 22
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=26.42 E-value=20 Score=21.81 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=9.4
Q ss_pred ceeeeeEeCCCC
Q 048049 24 VGRQIWEFDPDA 35 (77)
Q Consensus 24 vGRQ~WEFDp~~ 35 (77)
||| .|.||+++
T Consensus 37 vGr-~Wrv~~~a 47 (72)
T 1pm6_A 37 DGR-EYLFHESA 47 (72)
T ss_dssp CSS-SEEEETTC
T ss_pred cCC-EEEECchh
Confidence 786 89999986
No 23
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A*
Probab=26.39 E-value=12 Score=23.03 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHH----HHHHhhccCccCCc
Q 048049 36 DSPEELAEVEGA----RLNYFNNRFNVKNS 61 (77)
Q Consensus 36 GtpEE~a~VE~a----R~~F~~nRf~~K~S 61 (77)
-||+|++.++.. |.+|.-.||..|.+
T Consensus 32 ~t~~E~~~~~~~~~~~~~~~~a~rwaaKEA 61 (122)
T 1fth_A 32 LTALEMERFTSLKGRRQIEYLAGRWSAKEA 61 (122)
T ss_dssp SCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 589999988754 56666677776654
No 24
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.13 E-value=23 Score=20.54 Aligned_cols=12 Identities=25% Similarity=0.966 Sum_probs=9.3
Q ss_pred eEeCCCCCCHHH
Q 048049 29 WEFDPDADSPEE 40 (77)
Q Consensus 29 WEFDp~~GtpEE 40 (77)
|.|||..|.|++
T Consensus 11 yvYd~~~Gdp~~ 22 (54)
T 4rxn_A 11 YIYDPEDGDPDD 22 (54)
T ss_dssp CEECTTTCBGGG
T ss_pred eEECCCcCCccc
Confidence 789998876654
No 25
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=25.77 E-value=13 Score=25.34 Aligned_cols=15 Identities=40% Similarity=0.920 Sum_probs=12.2
Q ss_pred cceeeeeEeCCCCCC
Q 048049 23 HVGRQIWEFDPDADS 37 (77)
Q Consensus 23 ~vGRQ~WEFDp~~Gt 37 (77)
|.|-|+|.||+...+
T Consensus 115 Fkg~~ywr~d~~~~~ 129 (195)
T 1itv_A 115 FSGRRLWRFDVKAQM 129 (195)
T ss_dssp EETTEEEEEETTTTE
T ss_pred EeCCEEEEEeCCccc
Confidence 568999999987654
No 26
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=25.58 E-value=45 Score=21.30 Aligned_cols=16 Identities=25% Similarity=0.219 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHHHHHH
Q 048049 32 DPDADSPEELAEVEGA 47 (77)
Q Consensus 32 Dp~~GtpEE~a~VE~a 47 (77)
.|..-|+|||++|-.+
T Consensus 64 ~P~~P~~~eR~~I~~~ 79 (85)
T 2lqt_A 64 KPFMPTAAERDEILRA 79 (85)
T ss_dssp SCSSCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 5778899999998654
No 27
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=25.32 E-value=2.3e+02 Score=21.64 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=29.0
Q ss_pred CCceeccCCcceeeeeEeCCCCCCHHHH-HHHHHHHHHHhhc
Q 048049 14 DPYIFSTNNHVGRQIWEFDPDADSPEEL-AEVEGARLNYFNN 54 (77)
Q Consensus 14 ~p~L~S~Nn~vGRQ~WEFDp~~GtpEE~-a~VE~aR~~F~~n 54 (77)
+..+.+.|-.-|.-+.++- .+|+++. +.|+.||+.|..+
T Consensus 22 ~~~~~~~nP~tg~~i~~~~--~~~~~~v~~av~~A~~A~~~~ 61 (503)
T 3iwj_A 22 NKRIPVINPATQNIIGDIP--AATKEDVDVAVAAAKTALTRN 61 (503)
T ss_dssp CCEEEEECTTTCCEEEEEE--CCCHHHHHHHHHHHHHHHHGG
T ss_pred CCeEEeECCCCCCEEEEEc--CCCHHHHHHHHHHHHHHhhhc
Confidence 3466777878888888774 4567665 6799999999844
No 28
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=24.70 E-value=32 Score=21.85 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHhhccCccCCchhHHHHHHHhhhh
Q 048049 35 ADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQIQVICVI 74 (77)
Q Consensus 35 ~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR~Q~~~~~ 74 (77)
.|++.+|.-...|++-+.+.+-++ |+ .|||.+.+.
T Consensus 36 ~g~~~drKlLaeAQqmL~DSk~KI----e~-lRmqI~k~~ 70 (81)
T 1urf_A 36 NGSTKDRKLLLTAQQMLQDSKTKI----DI-IRMQLRRAL 70 (81)
T ss_dssp HSSSCCHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHH----HH-HHHHHHHHH
Confidence 367788888889999998865543 44 599987653
No 29
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=24.62 E-value=14 Score=25.52 Aligned_cols=14 Identities=29% Similarity=0.843 Sum_probs=11.4
Q ss_pred cceeeeeEeCCCCC
Q 048049 23 HVGRQIWEFDPDAD 36 (77)
Q Consensus 23 ~vGRQ~WEFDp~~G 36 (77)
|.|.|+|.||....
T Consensus 133 FkG~~ywr~d~~~~ 146 (207)
T 1pex_A 133 FSGNQVWRYDDTNH 146 (207)
T ss_dssp EETTEEEEEETTTT
T ss_pred EeCCEEEEEeCcCc
Confidence 57999999998643
No 30
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=24.31 E-value=42 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCCCceeccCCcceeeeeEeCCCCC
Q 048049 12 KNDPYIFSTNNHVGRQIWEFDPDAD 36 (77)
Q Consensus 12 g~~p~L~S~Nn~vGRQ~WEFDp~~G 36 (77)
|....|.++|+--+-|.|.|+++.|
T Consensus 402 g~~v~l~~C~~~~~~Q~W~~~~~~g 426 (472)
T 1xhb_A 402 NGPVTMLKCHHLKGNQLWEYDPVKL 426 (472)
T ss_dssp TCCCEEEECCTTCGGGCEEEETTTT
T ss_pred CceEEEEeCCCCCcCceEEEeCCCC
Confidence 3456788888867789999988555
No 31
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=24.05 E-value=94 Score=20.88 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=23.5
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhh-------cc--CccCCc--hhHHHHHHHhh
Q 048049 31 FDPDADSPEELAEVEGARLNYFN-------NR--FNVKNS--SNLIWQIQVIC 72 (77)
Q Consensus 31 FDp~~GtpEE~a~VE~aR~~F~~-------nR--f~~K~S--sDLLmR~Q~~~ 72 (77)
|+|+.-.-.+.+.||+.|+.+.. .+ ....++ ++||+++--+.
T Consensus 166 ~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL~~L~~Lr 218 (246)
T 1xvp_B 166 FSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELR 218 (246)
T ss_dssp SCSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHH
Confidence 45554333455678888776653 22 222333 88888765443
No 32
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=23.95 E-value=20 Score=24.75 Aligned_cols=15 Identities=13% Similarity=0.612 Sum_probs=11.9
Q ss_pred cceeeeeEeCCCCCC
Q 048049 23 HVGRQIWEFDPDADS 37 (77)
Q Consensus 23 ~vGRQ~WEFDp~~Gt 37 (77)
|.|.|+|+||+...+
T Consensus 141 FkG~~ywr~d~~~~~ 155 (218)
T 1gen_A 141 FAGDKFWRYNEVKKK 155 (218)
T ss_dssp EETTEEEEEETTTTE
T ss_pred EECCEEEEEECcccc
Confidence 469999999987653
No 33
>3oc5_A Toxin coregulated pilus biosynthesis protein F; multidomain protein, immunoglobulin-like (IG-like) fold, CEL adhesion; 2.40A {Vibrio cholerae}
Probab=22.80 E-value=30 Score=26.76 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=11.3
Q ss_pred eccCCcceeeeeEeCCC
Q 048049 18 FSTNNHVGRQIWEFDPD 34 (77)
Q Consensus 18 ~S~Nn~vGRQ~WEFDp~ 34 (77)
.-+||+.|.|+|+|-.+
T Consensus 258 h~s~n~~Gk~i~~~stn 274 (318)
T 3oc5_A 258 QPSNNLTGKKLYNVSTN 274 (318)
T ss_dssp CC---CCSEEEEEEECC
T ss_pred ccccCCCccceEEEecC
Confidence 34799999999999654
No 34
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=22.66 E-value=36 Score=28.66 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=27.7
Q ss_pred ceeccCCcceee--------------eeEeCCCCCCHHHHHHHHHHHH
Q 048049 16 YIFSTNNHVGRQ--------------IWEFDPDADSPEELAEVEGARL 49 (77)
Q Consensus 16 ~L~S~Nn~vGRQ--------------~WEFDp~~GtpEE~a~VE~aR~ 49 (77)
-+.+-..+||+. |-.|-..-||+|||..+++|-+
T Consensus 411 ~~~~~t~~VG~~ISTKaVGsd~ReDIT~~YKypEGS~eER~v~~kA~~ 458 (695)
T 1g0d_A 411 KITEDHASVGKNISTKSVYGNHREDVTLHYKYPEGSQKEREVYKKAGR 458 (695)
T ss_dssp ECEESSCCSSCCCEEECSSSSCEEECHHHHCCCTTCHHHHHHHHHHTC
T ss_pred EEeeccCccCcEeEcccCCCCccccccccCCCCCCCHHHHHHHHHHHh
Confidence 356777889988 6777777799999999999955
No 35
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=22.37 E-value=35 Score=18.04 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHH
Q 048049 36 DSPEELAEVEGARLNY 51 (77)
Q Consensus 36 GtpEE~a~VE~aR~~F 51 (77)
-|+|++++.|.+|++.
T Consensus 11 l~~eDi~e~E~~rke~ 26 (29)
T 3hym_A 11 LKLDDIEEFENIRKDL 26 (29)
T ss_dssp CCSGGGHHHHHHHHHC
T ss_pred ecHHHHHHHHHHHHHH
Confidence 4789999999999874
No 36
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=22.23 E-value=27 Score=25.45 Aligned_cols=12 Identities=58% Similarity=0.905 Sum_probs=10.1
Q ss_pred CCCCCCHHHHHH
Q 048049 32 DPDADSPEELAE 43 (77)
Q Consensus 32 Dp~~GtpEE~a~ 43 (77)
||+|.|+||..+
T Consensus 94 dp~apt~eek~~ 105 (259)
T 2a98_A 94 DPGAPTPEEHAQ 105 (259)
T ss_dssp CTTCSCHHHHHH
T ss_pred CCCCCchHHHHH
Confidence 788989999865
No 37
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=21.69 E-value=70 Score=23.96 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=19.6
Q ss_pred CCceeccCCcceeeeeEeCCCC---------CCHHHHHHH
Q 048049 14 DPYIFSTNNHVGRQIWEFDPDA---------DSPEELAEV 44 (77)
Q Consensus 14 ~p~L~S~Nn~vGRQ~WEFDp~~---------GtpEE~a~V 44 (77)
-|+++++|+ +.+|.+|... .||++..+-
T Consensus 116 ~p~~~~tng---~~~~~~D~~~~~~~~~~~~~~~~~l~~~ 152 (590)
T 3h1t_A 116 LKFAYSTNG---HEILEFDYTTGEEQLLSRFPTPDELFKR 152 (590)
T ss_dssp CSEEEEECS---SCEEEEETTTCCEEEESSCCCHHHHHHH
T ss_pred CCEEEEecC---cEEEEEeCCCCCccccCccCCHHHHHHH
Confidence 589999996 4677777543 468776543
No 38
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=21.67 E-value=25 Score=18.17 Aligned_cols=10 Identities=40% Similarity=0.365 Sum_probs=7.6
Q ss_pred eeccCCccee
Q 048049 17 IFSTNNHVGR 26 (77)
Q Consensus 17 L~S~Nn~vGR 26 (77)
+-|.|||.|=
T Consensus 4 igscn~fagc 13 (26)
T 1rpb_A 4 IGSCNDFAGC 13 (26)
T ss_dssp CSSBCSSSSS
T ss_pred eecccCcCCC
Confidence 4589999883
No 39
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=21.43 E-value=60 Score=21.65 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=21.3
Q ss_pred eEeCCCCCCHHHHHHHHHHHHHHhhcc
Q 048049 29 WEFDPDADSPEELAEVEGARLNYFNNR 55 (77)
Q Consensus 29 WEFDp~~GtpEE~a~VE~aR~~F~~nR 55 (77)
|-|+.-.-||++++++|..+..|..-|
T Consensus 14 ~vh~~L~Lt~~Q~~~leaie~~fa~~r 40 (118)
T 2y39_A 14 ILHEAVPLDANEREILELKEDAFAQRR 40 (118)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 445444569999999999999998755
No 40
>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A*
Probab=21.40 E-value=75 Score=22.70 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=23.3
Q ss_pred ccCCcceeeeeEeCCCCCCHHHHHHHHHHHHHHhhc
Q 048049 19 STNNHVGRQIWEFDPDADSPEELAEVEGARLNYFNN 54 (77)
Q Consensus 19 S~Nn~vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~~n 54 (77)
-++...++..|.|. -|++|+++|+.|=+.|...
T Consensus 15 ~~~~~~~~~~~~~~---lt~~e~~ei~~a~~~~~~~ 47 (358)
T 2wbq_A 15 DSVATPVRPWSEFR---LTPAEAAAAAALAARCAQR 47 (358)
T ss_dssp ------CCSSEEEE---CCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCceEEE---cCHHHHHHHHHHHHHhhcc
Confidence 34456677799997 5799999999999999753
No 41
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=20.89 E-value=19 Score=25.01 Aligned_cols=14 Identities=0% Similarity=-0.119 Sum_probs=11.8
Q ss_pred cceeeeeEeCCCCC
Q 048049 23 HVGRQIWEFDPDAD 36 (77)
Q Consensus 23 ~vGRQ~WEFDp~~G 36 (77)
|.|.++|.||+...
T Consensus 189 Fkg~~Ywr~d~~~~ 202 (227)
T 3lp9_A 189 FKDDHYARVKVTPX 202 (227)
T ss_dssp EETTEEEEEECCSS
T ss_pred EECCEEEEEECCcc
Confidence 46999999998765
No 42
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=20.87 E-value=31 Score=26.61 Aligned_cols=24 Identities=21% Similarity=0.595 Sum_probs=17.3
Q ss_pred CceeccCCcceeeeeEeC--CCCCCHHHH
Q 048049 15 PYIFSTNNHVGRQIWEFD--PDADSPEEL 41 (77)
Q Consensus 15 p~L~S~Nn~vGRQ~WEFD--p~~GtpEE~ 41 (77)
..|-|+--.| -|+|| |..||||++
T Consensus 272 SILmSLPp~a---~W~Y~~~pe~gS~Ea~ 297 (309)
T 1vju_A 272 SILISLPPRA---RWGYNWQPEPGTPEAR 297 (309)
T ss_dssp HHGGGSCSCC---CCCTTCCCCTTSHHHH
T ss_pred eeeecCCccC---eeccCCCCCCCCHHHH
Confidence 3566666665 69875 889999875
No 43
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=20.81 E-value=76 Score=17.47 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 048049 34 DADSPEELAEVEGARLNYFN 53 (77)
Q Consensus 34 ~~GtpEE~a~VE~aR~~F~~ 53 (77)
+..||||.|+--.+=++|-+
T Consensus 10 ~dA~pEela~Y~~~Lr~YiN 29 (36)
T 1bba_A 10 DNATPEQMAQYAAELRRYIN 29 (36)
T ss_dssp SCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 35689999998887777754
No 44
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A* 1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Probab=20.46 E-value=20 Score=30.19 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=28.7
Q ss_pred ceeeeeEeCCCCCCHHHHHHHHHHHHHHhhccCccCCchhHHHH
Q 048049 24 VGRQIWEFDPDADSPEELAEVEGARLNYFNNRFNVKNSSNLIWQ 67 (77)
Q Consensus 24 vGRQ~WEFDp~~GtpEE~a~VE~aR~~F~~nRf~~K~SsDLLmR 67 (77)
-||=.| ||++ |+|++++ |=+|.-|..+.--+..=.++||+
T Consensus 465 fGRLaW--~p~l-~~~~I~~-EW~~~Tf~~d~~~~~~v~~m~~~ 504 (679)
T 1l8n_A 465 FGRLAW--NPDL-SAEEIAN-EWVVQTFGDDSQVVETISWMLLS 504 (679)
T ss_dssp HHHHHH--CTTS-CHHHHHH-HHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHhhc--CCCC-CHHHHHH-HHHHHhcCCCHHHHHHHHHHHHh
Confidence 499999 9996 6888765 77888886655445555566654
No 45
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=20.17 E-value=70 Score=23.36 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=15.8
Q ss_pred eeEeCCCCCCHHHHHH-HHHHHH
Q 048049 28 IWEFDPDADSPEELAE-VEGARL 49 (77)
Q Consensus 28 ~WEFDp~~GtpEE~a~-VE~aR~ 49 (77)
.-.-||..||+||..+ |++|.+
T Consensus 69 y~~vdp~~Gt~~dfk~Lv~~aH~ 91 (549)
T 4aie_A 69 YEAIDPQYGTMADMDELISKAKE 91 (549)
T ss_dssp EEEECTTTCCHHHHHHHHHHHHH
T ss_pred CCCcCcccCCHHHHHHHHHHHHH
Confidence 3456999999999754 566654
No 46
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, CO complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A*
Probab=20.12 E-value=16 Score=22.21 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHH----HHHHhhccCccCC
Q 048049 36 DSPEELAEVEGA----RLNYFNNRFNVKN 60 (77)
Q Consensus 36 GtpEE~a~VE~a----R~~F~~nRf~~K~ 60 (77)
-||+|++.++.. +.+|.-.||-.|.
T Consensus 30 ~t~~E~~~~~~~~~~~~~~~la~rwaaKE 58 (121)
T 1f7l_A 30 LTRSELDQYYELSEKRKNEFLAGRFAAKE 58 (121)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence 489999887643 5667766766653
Done!