Query 048050
Match_columns 77
No_of_seqs 125 out of 1011
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:47:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 2.6E-24 5.6E-29 152.6 7.4 55 1-55 17-75 (371)
2 KOG0712 Molecular chaperone (D 99.9 9.6E-23 2.1E-27 143.1 7.2 53 1-53 17-70 (337)
3 KOG0713 Molecular chaperone (D 99.9 6.5E-22 1.4E-26 138.4 6.9 52 1-52 29-84 (336)
4 PRK14288 chaperone protein Dna 99.8 1.8E-19 3.8E-24 128.0 6.4 52 1-52 16-71 (369)
5 PRK14296 chaperone protein Dna 99.8 2.3E-19 5E-24 127.6 6.3 52 1-52 17-71 (372)
6 PTZ00037 DnaJ_C chaperone prot 99.8 3.1E-19 6.8E-24 128.7 6.0 52 1-52 41-92 (421)
7 PRK14279 chaperone protein Dna 99.8 1.3E-18 2.7E-23 124.5 6.0 51 1-51 22-76 (392)
8 PRK14286 chaperone protein Dna 99.8 2E-18 4.4E-23 122.7 6.4 52 1-52 17-72 (372)
9 PRK14287 chaperone protein Dna 99.7 4E-18 8.6E-23 121.2 6.4 52 1-52 17-71 (371)
10 PRK14276 chaperone protein Dna 99.7 6E-18 1.3E-22 120.5 6.3 52 1-52 17-71 (380)
11 PRK14283 chaperone protein Dna 99.7 5.9E-18 1.3E-22 120.4 6.2 52 1-52 18-72 (378)
12 PRK14282 chaperone protein Dna 99.7 7E-18 1.5E-22 119.8 6.2 52 1-52 17-73 (369)
13 PRK14299 chaperone protein Dna 99.7 8.5E-18 1.8E-22 116.2 6.5 52 1-52 17-71 (291)
14 PRK14285 chaperone protein Dna 99.7 7E-18 1.5E-22 119.7 6.1 52 1-52 16-71 (365)
15 PRK14298 chaperone protein Dna 99.7 7E-18 1.5E-22 120.2 5.9 52 1-52 18-72 (377)
16 KOG0717 Molecular chaperone (D 99.7 7.9E-18 1.7E-22 121.8 6.2 51 1-51 21-76 (508)
17 PRK14292 chaperone protein Dna 99.7 1.5E-17 3.2E-22 118.0 7.5 52 1-52 15-69 (371)
18 PRK14277 chaperone protein Dna 99.7 9.6E-18 2.1E-22 119.7 6.4 52 1-52 18-73 (386)
19 PRK14291 chaperone protein Dna 99.7 1.1E-17 2.4E-22 119.3 6.4 52 1-52 16-70 (382)
20 PRK14280 chaperone protein Dna 99.7 1.1E-17 2.4E-22 119.0 6.3 52 1-52 17-71 (376)
21 PRK14278 chaperone protein Dna 99.7 1.2E-17 2.6E-22 118.9 5.9 52 1-52 16-70 (378)
22 PRK14294 chaperone protein Dna 99.7 1.8E-17 3.8E-22 117.6 6.4 52 1-52 17-72 (366)
23 PRK14284 chaperone protein Dna 99.7 1.7E-17 3.7E-22 118.5 6.4 52 1-52 14-69 (391)
24 PHA03102 Small T antigen; Revi 99.7 1.6E-17 3.4E-22 106.3 5.5 53 1-53 20-72 (153)
25 PRK14297 chaperone protein Dna 99.7 1.3E-17 2.9E-22 118.7 5.7 52 1-52 17-72 (380)
26 PRK14301 chaperone protein Dna 99.7 1.7E-17 3.7E-22 118.0 5.8 52 1-52 17-72 (373)
27 KOG0718 Molecular chaperone (D 99.7 2.2E-17 4.9E-22 119.8 6.0 53 1-53 22-81 (546)
28 KOG0716 Molecular chaperone (D 99.7 2.7E-17 5.9E-22 112.6 5.8 52 1-52 44-99 (279)
29 PRK14295 chaperone protein Dna 99.7 3.1E-17 6.7E-22 117.3 6.3 51 1-51 22-80 (389)
30 PRK14281 chaperone protein Dna 99.7 3.7E-17 8.1E-22 117.1 5.9 52 1-52 16-71 (397)
31 PRK10767 chaperone protein Dna 99.7 5.5E-17 1.2E-21 115.1 6.2 52 1-52 17-72 (371)
32 KOG0715 Molecular chaperone (D 99.7 1.2E-16 2.6E-21 110.7 6.2 53 1-53 56-111 (288)
33 PRK14300 chaperone protein Dna 99.7 1.2E-16 2.6E-21 113.6 6.0 52 1-52 16-70 (372)
34 TIGR02349 DnaJ_bact chaperone 99.7 1.4E-16 3E-21 112.4 6.1 52 1-52 13-67 (354)
35 KOG0691 Molecular chaperone (D 99.7 1.7E-16 3.8E-21 110.3 6.1 53 1-53 18-74 (296)
36 PRK14289 chaperone protein Dna 99.7 2E-16 4.3E-21 112.8 6.4 52 1-52 18-73 (386)
37 PRK14290 chaperone protein Dna 99.7 1.9E-16 4.2E-21 112.3 6.0 52 1-52 16-72 (365)
38 PRK14293 chaperone protein Dna 99.7 2.2E-16 4.7E-21 112.3 6.1 52 1-52 16-70 (374)
39 PRK10266 curved DNA-binding pr 99.6 2.4E-16 5.3E-21 109.5 6.0 51 1-51 17-70 (306)
40 PTZ00341 Ring-infected erythro 99.6 1.9E-16 4.1E-21 122.4 5.8 53 1-53 586-641 (1136)
41 PF00226 DnaJ: DnaJ domain; I 99.6 7E-16 1.5E-20 84.9 5.3 47 1-47 13-64 (64)
42 KOG0719 Molecular chaperone (D 99.6 3.1E-15 6.7E-20 101.1 5.6 53 1-53 27-85 (264)
43 KOG0721 Molecular chaperone (D 99.5 1.9E-14 4.1E-19 96.3 6.0 53 1-53 112-168 (230)
44 COG2214 CbpA DnaJ-class molecu 99.5 9.8E-14 2.1E-18 89.0 6.2 49 1-49 19-72 (237)
45 smart00271 DnaJ DnaJ molecular 99.5 9.1E-14 2E-18 75.3 4.5 41 1-41 14-59 (60)
46 TIGR03835 termin_org_DnaJ term 99.4 2.2E-13 4.7E-18 103.8 6.5 52 1-52 15-69 (871)
47 PRK01356 hscB co-chaperone Hsc 99.4 3.4E-13 7.4E-18 87.2 6.5 50 2-51 18-74 (166)
48 KOG0624 dsRNA-activated protei 99.4 3E-13 6.4E-18 96.7 6.6 52 1-52 407-465 (504)
49 cd06257 DnaJ DnaJ domain or J- 99.4 2.7E-13 5.8E-18 72.2 4.7 39 1-39 13-55 (55)
50 PRK05014 hscB co-chaperone Hsc 99.4 4.3E-13 9.3E-18 87.1 6.1 50 2-51 17-75 (171)
51 PRK00294 hscB co-chaperone Hsc 99.4 4.9E-13 1.1E-17 87.1 6.2 50 2-51 20-78 (173)
52 TIGR00714 hscB Fe-S protein as 99.4 6.7E-13 1.4E-17 85.2 6.0 50 2-51 5-63 (157)
53 PRK03578 hscB co-chaperone Hsc 99.4 1.3E-12 2.8E-17 85.3 6.1 49 2-50 22-79 (176)
54 KOG0722 Molecular chaperone (D 99.3 2.5E-12 5.4E-17 88.4 3.9 56 2-57 47-105 (329)
55 KOG0714 Molecular chaperone (D 99.3 3.8E-12 8.2E-17 85.1 4.1 52 1-52 16-72 (306)
56 PTZ00100 DnaJ chaperone protei 99.2 1.5E-11 3.2E-16 75.7 5.1 38 1-38 78-115 (116)
57 PHA02624 large T antigen; Prov 99.2 1.5E-11 3.2E-16 92.4 5.5 46 1-46 26-71 (647)
58 KOG0720 Molecular chaperone (D 99.2 8.8E-12 1.9E-16 90.6 3.9 53 1-53 248-303 (490)
59 KOG0550 Molecular chaperone (D 99.1 8.5E-11 1.9E-15 85.1 5.7 50 1-50 386-440 (486)
60 PRK09430 djlA Dna-J like membr 99.1 1.5E-10 3.2E-15 79.7 4.3 39 1-39 213-262 (267)
61 PRK01773 hscB co-chaperone Hsc 99.1 4.3E-10 9.4E-15 73.3 5.9 50 2-51 18-76 (173)
62 COG5407 SEC63 Preprotein trans 99.0 3.4E-10 7.3E-15 82.9 4.5 53 1-53 111-172 (610)
63 COG5269 ZUO1 Ribosome-associat 98.9 3.8E-09 8.2E-14 73.6 5.1 50 1-50 59-114 (379)
64 KOG1150 Predicted molecular ch 98.7 2.2E-08 4.7E-13 67.1 4.8 46 1-46 66-116 (250)
65 KOG1789 Endocytosis protein RM 98.7 2.7E-08 5.9E-13 79.0 4.5 37 2-38 1299-1336(2235)
66 KOG0431 Auxilin-like protein a 98.0 6.9E-06 1.5E-10 60.4 4.1 36 1-36 401-447 (453)
67 KOG0723 Molecular chaperone (D 97.8 6.7E-05 1.5E-09 45.7 4.6 39 2-40 70-108 (112)
68 KOG0568 Molecular chaperone (D 97.6 0.00011 2.3E-09 50.7 4.4 38 2-39 61-102 (342)
69 KOG3192 Mitochondrial J-type c 97.5 0.00018 3.9E-09 46.5 4.4 47 4-50 26-81 (168)
70 COG1076 DjlA DnaJ-domain-conta 97.1 0.00081 1.8E-08 43.6 3.6 49 3-51 18-75 (174)
71 COG1076 DjlA DnaJ-domain-conta 95.5 0.01 2.2E-07 38.4 2.2 37 1-37 126-173 (174)
72 KOG0724 Zuotin and related mol 94.6 0.041 9E-07 38.6 3.2 48 2-49 6-61 (335)
73 PF14687 DUF4460: Domain of un 92.3 0.39 8.5E-06 29.3 4.4 40 2-41 8-55 (112)
74 PF03656 Pam16: Pam16; InterP 88.5 1.7 3.8E-05 27.1 5.0 40 1-40 71-110 (127)
75 PF07709 SRR: Seven Residue Re 80.8 1.2 2.6E-05 17.3 1.1 13 26-38 2-14 (14)
76 PF12434 Malate_DH: Malate deh 77.2 3.3 7.2E-05 19.2 2.2 17 2-18 10-26 (28)
77 cd01388 SOX-TCF_HMG-box SOX-TC 73.5 12 0.00027 20.2 4.6 40 8-48 15-54 (72)
78 COG4907 Predicted membrane pro 64.7 12 0.00025 28.7 3.8 15 27-41 525-539 (595)
79 PF11833 DUF3353: Protein of u 64.6 19 0.0004 23.9 4.4 34 1-38 5-38 (194)
80 COG2879 Uncharacterized small 63.8 16 0.00034 20.3 3.3 15 9-23 28-42 (65)
81 cd01389 MATA_HMG-box MATA_HMG- 59.9 27 0.00059 19.1 4.7 40 7-47 14-53 (77)
82 cd01390 HMGB-UBF_HMG-box HMGB- 57.2 26 0.00057 18.1 4.5 39 9-48 15-53 (66)
83 KOG0527 HMG-box transcription 56.0 21 0.00046 25.7 3.8 42 7-49 75-116 (331)
84 cd00084 HMG-box High Mobility 54.3 29 0.00063 17.7 4.5 40 7-47 13-52 (66)
85 PF00505 HMG_box: HMG (high mo 51.6 32 0.00069 17.9 3.3 37 8-45 14-50 (69)
86 PF10475 DUF2450: Protein of u 50.3 25 0.00054 24.3 3.3 33 3-41 182-214 (291)
87 PF06767 Sif: Sif protein; In 45.2 41 0.00089 24.4 3.8 41 6-46 44-84 (337)
88 KOG3960 Myogenic helix-loop-he 39.8 19 0.00042 25.3 1.5 14 25-38 128-141 (284)
89 PTZ00199 high mobility group p 38.9 78 0.0017 18.2 4.5 37 10-46 38-75 (94)
90 PRK10141 DNA-binding transcrip 36.0 46 0.001 20.2 2.6 25 27-51 3-27 (117)
91 PF01846 FF: FF domain; Inter 32.7 70 0.0015 15.9 4.3 18 4-23 1-18 (51)
92 PF03820 Mtc: Tricarboxylate c 32.7 99 0.0021 22.1 4.1 22 1-22 49-70 (308)
93 COG3195 Uncharacterized protei 30.5 47 0.001 21.9 2.1 11 25-35 107-117 (176)
94 PF04328 DUF466: Protein of un 30.3 1E+02 0.0022 16.9 3.8 16 8-23 27-42 (65)
95 smart00398 HMG high mobility g 29.4 88 0.0019 16.0 4.3 38 9-47 16-53 (70)
96 PF08726 EFhand_Ca_insen: Ca2+ 29.2 33 0.00071 19.1 1.1 13 1-13 4-16 (69)
97 PF06975 DUF1299: Protein of u 28.8 15 0.00032 18.8 -0.4 11 31-41 10-20 (47)
98 KOG2320 RAS effector RIN1 (con 27.8 88 0.0019 24.7 3.4 18 3-20 404-421 (651)
99 PF12840 HTH_20: Helix-turn-he 26.7 70 0.0015 16.5 2.1 18 32-49 2-19 (61)
100 PTZ00043 cytochrome c oxidase 25.7 1.4E+02 0.0029 20.9 3.7 35 5-39 98-133 (268)
101 PF12481 DUF3700: Aluminium in 25.2 86 0.0019 21.6 2.7 24 14-39 93-116 (228)
102 PF00880 Nebulin: Nebulin repe 25.2 78 0.0017 14.0 2.0 23 26-48 4-26 (29)
103 PRK10455 periplasmic protein; 25.0 1.1E+02 0.0025 19.6 3.1 21 29-50 122-142 (161)
104 cd07355 HN_L-delphilin-R2_like 23.7 1.6E+02 0.0035 17.0 3.9 32 12-47 27-58 (80)
105 PHA02513 V1 structural protein 23.5 95 0.0021 19.3 2.4 33 2-34 24-56 (135)
106 PF07813 LTXXQ: LTXXQ motif fa 23.4 1.2E+02 0.0026 16.8 2.8 21 27-48 78-98 (100)
107 PF04859 DUF641: Plant protein 22.2 78 0.0017 19.9 1.9 17 3-19 22-38 (131)
108 PRK13798 putative OHCU decarbo 21.7 1.4E+02 0.0031 19.2 3.1 12 11-22 65-76 (166)
109 PF07739 TipAS: TipAS antibiot 21.5 1.8E+02 0.0038 16.7 5.2 38 5-47 62-99 (118)
110 PRK09498 sifA secreted effecto 21.5 2.5E+02 0.0054 20.3 4.4 42 7-48 45-86 (336)
111 PF02319 E2F_TDP: E2F/DP famil 21.3 1.1E+02 0.0023 16.7 2.2 20 30-49 27-50 (71)
112 TIGR03164 UHCUDC OHCU decarbox 21.1 1.9E+02 0.0041 18.4 3.5 11 12-22 54-64 (157)
113 PF14010 PEPcase_2: Phosphoeno 20.9 43 0.00094 25.5 0.7 24 16-39 8-39 (491)
114 TIGR03180 UraD_2 OHCU decarbox 20.8 1.5E+02 0.0033 18.9 3.1 12 11-22 55-66 (158)
115 PF04949 Transcrip_act: Transc 20.4 1.4E+02 0.003 19.4 2.8 21 24-44 65-85 (159)
116 smart00380 AP2 DNA-binding dom 20.2 1.5E+02 0.0033 15.5 2.6 20 1-20 33-52 (64)
117 KOG3935 Predicted glycerate ki 20.0 1.4E+02 0.003 22.2 3.0 40 37-76 296-347 (446)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.6e-24 Score=152.61 Aligned_cols=55 Identities=35% Similarity=0.405 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCC-C---hHHHHHHHHHHHhcCChhhHHHHhhhcccccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSG-N---SRDFIEIHNSYETLSDPTARAIYDISLEEDEN 55 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~-~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~~~ 55 (77)
|++|||+|||+||++||||+|+ + +++|++|++||+|||||++|+.||++++....
T Consensus 17 s~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 17 SEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 6799999999999999999999 3 68999999999999999999999999988654
No 2
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.6e-23 Score=143.14 Aligned_cols=53 Identities=40% Similarity=0.469 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
|++|||+|||+||++||||+||+ .++|++|++||+|||||++|.+||.+++..
T Consensus 17 s~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 17 SEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 67999999999999999999998 689999999999999999999999999763
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.5e-22 Score=138.35 Aligned_cols=52 Identities=38% Similarity=0.450 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+..|||+|||+||+++|||+||+ .+.|+.|+.||+|||||++|+.||.+|+.
T Consensus 29 sd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 29 SDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 46899999999999999999997 58999999999999999999999999865
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.8e-19 Score=127.99 Aligned_cols=52 Identities=29% Similarity=0.340 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+||++||||+++. +++|++|++||+||+||++|+.||.++..
T Consensus 16 s~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 16 NQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 57899999999999999999983 57999999999999999999999998864
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.3e-19 Score=127.55 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+||++||||++++ +++|++|++||+||+||++|+.||.++..
T Consensus 17 ~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 17 SEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 56899999999999999999975 68999999999999999999999998764
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.78 E-value=3.1e-19 Score=128.69 Aligned_cols=52 Identities=40% Similarity=0.468 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+||++||||++++.++|++|++||+||+||.+|+.||.++..
T Consensus 41 s~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 41 TTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred CHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 5789999999999999999998889999999999999999999999998764
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=124.49 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.+|||+|||+||++||||++++ ++.|++|++||+||+||++|+.||.++.
T Consensus 22 ~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 22 SAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 46899999999999999999984 5899999999999999999999999864
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=122.71 Aligned_cols=52 Identities=31% Similarity=0.348 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+||++||||+++. +++|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 17 NDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 56899999999999999999974 58999999999999999999999998764
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=4e-18 Score=121.17 Aligned_cols=52 Identities=33% Similarity=0.417 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.+|||+|||+||++||||++++ +++|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 17 SVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 46899999999999999999975 57999999999999999999999998864
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=6e-18 Score=120.50 Aligned_cols=52 Identities=35% Similarity=0.469 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+||++||||++++ +++|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 17 SQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 57899999999999999999975 68999999999999999999999998764
No 11
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.9e-18 Score=120.43 Aligned_cols=52 Identities=33% Similarity=0.348 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+||++||||++++ ++.|++|++||+||+||.+|+.||.++..
T Consensus 18 ~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 18 DKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 57899999999999999999874 68999999999999999999999998764
No 12
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=7e-18 Score=119.75 Aligned_cols=52 Identities=35% Similarity=0.413 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+||++||||+++. +++|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 17 TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 57899999999999999999874 47999999999999999999999998764
No 13
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=8.5e-18 Score=116.21 Aligned_cols=52 Identities=35% Similarity=0.444 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+||++||||++++ +++|++|++||+||+||.+|..||.++..
T Consensus 17 ~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 17 SQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 57899999999999999999975 68999999999999999999999998764
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=7e-18 Score=119.72 Aligned_cols=52 Identities=29% Similarity=0.242 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+|+++||||+++. .++|++|++||+||+||.+|..||.++..
T Consensus 16 ~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 16 SKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 57899999999999999999974 47899999999999999999999998764
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=7e-18 Score=120.17 Aligned_cols=52 Identities=33% Similarity=0.318 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.+|||+|||+||++||||++++ +++|++|++||+||+||.+|+.||.++..
T Consensus 18 ~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 18 SVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 56899999999999999999975 57999999999999999999999998764
No 16
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.9e-18 Score=121.81 Aligned_cols=51 Identities=35% Similarity=0.415 Sum_probs=47.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
++.+||++||+|||+||||++|. +++|+.|+.||+|||||+.|++||.+..
T Consensus 21 ~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 21 DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 46799999999999999999987 6899999999999999999999998865
No 17
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.5e-17 Score=118.03 Aligned_cols=52 Identities=31% Similarity=0.342 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|+++||+|||+|+++||||++++ +++|+.|++||+||+||.+|+.||.++..
T Consensus 15 ~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 15 SADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 57899999999999999999975 68999999999999999999999998764
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=9.6e-18 Score=119.68 Aligned_cols=52 Identities=37% Similarity=0.470 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+||++||||++++ +++|++|++||+||+||.+|..||.++..
T Consensus 18 ~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 18 TEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 56899999999999999999984 57999999999999999999999998754
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.1e-17 Score=119.26 Aligned_cols=52 Identities=37% Similarity=0.519 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.++||+|||+||++||||++++ ++.|++|++||+||+||.+|+.||.++..
T Consensus 16 ~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 16 TQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 56899999999999999999975 68999999999999999999999998764
No 20
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1.1e-17 Score=119.02 Aligned_cols=52 Identities=35% Similarity=0.398 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+|+++||||++++ +++|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 17 SKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 56899999999999999999875 68999999999999999999999998864
No 21
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=118.94 Aligned_cols=52 Identities=33% Similarity=0.413 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.+|||+|||+||++||||++++ ++.|++|++||+||+||.+|+.||.++..
T Consensus 16 ~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 16 SDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 56899999999999999999986 57899999999999999999999998763
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.8e-17 Score=117.61 Aligned_cols=52 Identities=35% Similarity=0.384 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.+|||+|||+||++||||+++. ++.|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 17 SEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 46899999999999999999984 57999999999999999999999998864
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.7e-17 Score=118.52 Aligned_cols=52 Identities=33% Similarity=0.420 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+||++||||++++ ++.|++|++||+||+|+.+|+.||.++..
T Consensus 14 ~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 14 SPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 57899999999999999999985 57999999999999999999999998754
No 24
>PHA03102 Small T antigen; Reviewed
Probab=99.71 E-value=1.6e-17 Score=106.33 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
|.++||+|||++++++|||++++++.|+.|++||++|+|+..|..||.++...
T Consensus 20 s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 20 NLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred CHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 46899999999999999999988999999999999999999999999998764
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=118.67 Aligned_cols=52 Identities=33% Similarity=0.364 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.+|||+|||+||++||||+++. +++|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 17 SDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 56899999999999999999974 57999999999999999999999998764
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.7e-17 Score=118.01 Aligned_cols=52 Identities=31% Similarity=0.305 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.++||+|||+||++||||++++ ++.|++|++||+||+||.+|+.||.++..
T Consensus 17 ~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 17 SEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 56899999999999999999974 47999999999999999999999998764
No 27
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-17 Score=119.79 Aligned_cols=53 Identities=36% Similarity=0.478 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-------SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
|.+||++|||++++.||||++.+ ++.|+.|.+|||||+||++|++||.+|..+
T Consensus 22 t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG 81 (546)
T KOG0718|consen 22 TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG 81 (546)
T ss_pred CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence 57999999999999999999874 578999999999999999999999998874
No 28
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.7e-17 Score=112.62 Aligned_cols=52 Identities=38% Similarity=0.474 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.++|||+||+|++++|||++++ .++|++||+||+||+||.+|..||.++..
T Consensus 44 t~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 44 TKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL 99 (279)
T ss_pred chHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence 46899999999999999999986 58999999999999999999999999754
No 29
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=3.1e-17 Score=117.25 Aligned_cols=51 Identities=31% Similarity=0.361 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhh----hcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDI----SLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~----~~~ 51 (77)
|++|||+|||+||++||||+++. +++|++|++||+||+||.+|+.||. ++.
T Consensus 22 ~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~ 80 (389)
T PRK14295 22 TEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGN 80 (389)
T ss_pred CHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcc
Confidence 56899999999999999999874 5899999999999999999999998 664
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.7e-17 Score=117.05 Aligned_cols=52 Identities=29% Similarity=0.300 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.+|||+|||+||++||||++++ ++.|++|++||+||+||.+|+.||.++..
T Consensus 16 ~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 16 DKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 56899999999999999999975 57999999999999999999999998764
No 31
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.5e-17 Score=115.13 Aligned_cols=52 Identities=37% Similarity=0.412 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+||++||||++++ ++.|++|++||+||+||.+|..||.++..
T Consensus 17 s~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 17 SEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 56899999999999999999974 47999999999999999999999998754
No 32
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-16 Score=110.69 Aligned_cols=53 Identities=36% Similarity=0.445 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+..|||+||++|++++|||.+.+ .++|++|.+|||||+|+++|..||..+...
T Consensus 56 t~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 56 TLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 56899999999999999999986 689999999999999999999999998864
No 33
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.2e-16 Score=113.58 Aligned_cols=52 Identities=31% Similarity=0.389 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+|+++||||++++ +++|++|++||+||+|+.+|+.||.++..
T Consensus 16 s~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 16 SQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 57899999999999999999874 67999999999999999999999998764
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.66 E-value=1.4e-16 Score=112.36 Aligned_cols=52 Identities=37% Similarity=0.444 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.++||+|||+||++||||+++. ++.|++|++||+||+|+.+|..||.++..
T Consensus 13 ~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 13 SEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 56899999999999999999964 57999999999999999999999998764
No 35
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.7e-16 Score=110.27 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=49.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
++.+|++||+..+++||||+||+ .+.|+.|.+||+||+|+..|..||.++...
T Consensus 18 t~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 18 TDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 56899999999999999999997 589999999999999999999999998653
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=2e-16 Score=112.83 Aligned_cols=52 Identities=29% Similarity=0.296 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+||++||||+++. .++|++|++||+||+||.+|+.||.++..
T Consensus 18 ~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 18 TVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 56899999999999999999974 57999999999999999999999998764
No 37
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.9e-16 Score=112.27 Aligned_cols=52 Identities=33% Similarity=0.405 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.+|||+|||+|+++||||+++. .++|++|++||+||+|+.+|..||.++..
T Consensus 16 ~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 16 SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 56899999999999999999874 47999999999999999999999998753
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2.2e-16 Score=112.29 Aligned_cols=52 Identities=38% Similarity=0.441 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|++|||+|||+|+++||||++++ +++|+.|++||+||+||.+|+.||.++..
T Consensus 16 ~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 16 DKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 57899999999999999999875 68999999999999999999999998754
No 39
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.65 E-value=2.4e-16 Score=109.53 Aligned_cols=51 Identities=33% Similarity=0.379 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
|.+|||+|||+||++||||+++. ++.|++|++||++|+||.+|+.||.++.
T Consensus 17 ~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 17 DLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 46899999999999999999864 6899999999999999999999998763
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.65 E-value=1.9e-16 Score=122.43 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
|+.+||+|||+||++||||++++ .+.|+.|++||+|||||.+|+.||.+|..+
T Consensus 586 S~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 586 DMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 56899999999999999999985 578999999999999999999999998753
No 41
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.63 E-value=7e-16 Score=84.92 Aligned_cols=47 Identities=36% Similarity=0.506 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHhcCChhhHHHHh
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-S----RDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-~----~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+.++|+++|+++++.+|||+++. . +.|..|++||++|++|..|+.||
T Consensus 13 ~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 13 SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 46899999999999999999775 4 79999999999999999999998
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.1e-15 Score=101.13 Aligned_cols=53 Identities=28% Similarity=0.338 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN------SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
++.+|++||++|++++|||+++. .+.|++|+.||+||+|.+.|+.||..|...
T Consensus 27 ~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 27 TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 46899999999999999999963 579999999999999999999999998764
No 43
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.9e-14 Score=96.30 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
|..|||+|||+|++++||||++. ++.|..|++||+.|+|+..|.+|..+++++
T Consensus 112 s~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 112 SEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred CHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 56899999999999999999865 678999999999999999999999999874
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=9.8e-14 Score=89.02 Aligned_cols=49 Identities=39% Similarity=0.438 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhh
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDIS 49 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~ 49 (77)
+.++|++|||++++++|||+++. .+.|..|++||++|+|+..|..||..
T Consensus 19 s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 19 SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 46899999999999999999985 38999999999999999999999985
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.47 E-value=9.1e-14 Score=75.27 Aligned_cols=41 Identities=37% Similarity=0.418 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChh
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPT 41 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~ 41 (77)
+.++|+++|+++++.+|||+++. .+.|..|++||++|+||.
T Consensus 14 ~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 14 SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999983 689999999999999984
No 46
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.44 E-value=2.2e-13 Score=103.82 Aligned_cols=52 Identities=31% Similarity=0.332 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.++||+|||+|++++|||++++ ...|+.|++||++|+||.+|+.||.++..
T Consensus 15 S~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a 69 (871)
T TIGR03835 15 DEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD 69 (871)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence 46899999999999999999875 56899999999999999999999998764
No 47
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=3.4e-13 Score=87.24 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN-------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~-------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
..+|+++|+++++++|||+..+ .+.+..|++||+||+||.+|+.|+....
T Consensus 18 ~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 18 LKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred HHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 5789999999999999999875 1357899999999999999999987654
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.44 E-value=3e-13 Score=96.68 Aligned_cols=52 Identities=29% Similarity=0.373 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-------SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+..||.||||++|.+||||-..+ +.+|.-|..|=+||+||++|+.||....+
T Consensus 407 sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 407 SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence 46799999999999999998776 46899999999999999999999987654
No 49
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.43 E-value=2.7e-13 Score=72.18 Aligned_cols=39 Identities=36% Similarity=0.413 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCC
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSD 39 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d 39 (77)
+.++|+++|+++++++|||+++. .+.|..|++||++|+|
T Consensus 13 ~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 13 SDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999984 6799999999999986
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=4.3e-13 Score=87.08 Aligned_cols=50 Identities=30% Similarity=0.424 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.+|+++|+++++++|||+..+ .+.|..||+||++|+||..|+.|+....
T Consensus 17 ~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 17 TQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 5799999999999999999764 2478999999999999999999986543
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.42 E-value=4.9e-13 Score=87.06 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.+|+++|+++++++|||+..+ .+.|..||+||+||+||.+|+.|+....
T Consensus 20 ~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 20 LDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5899999999999999999864 2579999999999999999999997654
No 52
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.40 E-value=6.7e-13 Score=85.17 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.+|+++|+++++++|||+.++ .+.|..||+||++|+||.+|+.|+..+.
T Consensus 5 ~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 5 TQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5789999999999999998653 3679999999999999999999998765
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.38 E-value=1.3e-12 Score=85.26 Aligned_cols=49 Identities=27% Similarity=0.270 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
+.+|+++|+++++++|||+.+. .+.+..||+||++|+||.+|+.|+..+
T Consensus 22 ~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 22 EAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 5789999999999999999864 234689999999999999999999654
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.5e-12 Score=88.40 Aligned_cols=56 Identities=27% Similarity=0.385 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccccccch
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEEDENNV 57 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~~~~~ 57 (77)
.++|.+|||+||+++|||++++ .+.|..|.+||++|.|...|..||-....+...|
T Consensus 47 KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd~~f 105 (329)
T KOG0722|consen 47 KSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPDEVF 105 (329)
T ss_pred HHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCchHHH
Confidence 5799999999999999999987 5689999999999999999999998876654433
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.8e-12 Score=85.10 Aligned_cols=52 Identities=40% Similarity=0.452 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNS-----RDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~-----~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
|.++|++||+++++++|||+++.. .+|.+|.+||+||+|+.+|..||.++..
T Consensus 16 s~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~ 72 (306)
T KOG0714|consen 16 SEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE 72 (306)
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence 356999999999999999998752 4699999999999999999999999863
No 56
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.24 E-value=1.5e-11 Score=75.66 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcC
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLS 38 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~ 38 (77)
|.+||+++||+|++++|||+..+.+.|.+|++||++|.
T Consensus 78 s~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 78 SKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999877889999999999985
No 57
>PHA02624 large T antigen; Provisional
Probab=99.23 E-value=1.5e-11 Score=92.42 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
+.++||+|||++++++|||++.+++.|++|++||++|+|+..+..|
T Consensus 26 s~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 26 NLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred CHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 4679999999999999999988899999999999999999999998
No 58
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.8e-12 Score=90.63 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+.||++|...|||||.. ++.|+.|.-||++|+|+.+|..||.....+
T Consensus 248 sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 248 SDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred CHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 56899999999999999999975 789999999999999999999999887554
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.5e-11 Score=85.12 Aligned_cols=50 Identities=30% Similarity=0.332 Sum_probs=45.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
|..|||+|||++++.+|||++.. +..|++|-+||.+|+||.+|..||...
T Consensus 386 s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 386 SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 45789999999999999999875 468999999999999999999999763
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.07 E-value=1.5e-10 Score=79.66 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=34.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHhcCC
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----------SRDFIEIHNSYETLSD 39 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----------~~~f~~i~~Ay~vL~d 39 (77)
|+++||+|||+|++++|||+..+ +++|++|++||++|+.
T Consensus 213 s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 213 DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999632 4799999999999975
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.06 E-value=4.3e-10 Score=73.26 Aligned_cols=50 Identities=26% Similarity=0.278 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.++++.|+.|++.+|||+... .+....||+||.+|+||.+|+.|=..+.
T Consensus 18 ~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 18 NALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred HHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 4679999999999999999754 2467899999999999999999976554
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.02 E-value=3.4e-10 Score=82.91 Aligned_cols=53 Identities=21% Similarity=0.155 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
|..+||++||+|+.++||||.++ ++.+.+|++||+.|+|...|.+|-.+|.++
T Consensus 111 s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 111 SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 45789999999999999999886 578999999999999999999999998874
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.8e-09 Score=73.56 Aligned_cols=50 Identities=30% Similarity=0.335 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN------SRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~------~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
.+.+|.+|.++.+.+||||+... .+.|..|+.||+||+|+..|..||.--
T Consensus 59 ~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 59 IPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred CcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 36789999999999999999732 689999999999999999999999753
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.2e-08 Score=67.07 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHH
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
+.++||+.||+|++..|||+|++ ...|..|.+||..|-|+..|..-
T Consensus 66 ~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 66 TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 35899999999999999999997 46899999999999999866543
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.7e-08 Score=78.98 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHhcC
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN-SRDFIEIHNSYETLS 38 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~ 38 (77)
++.||++|++|+.+|||||||. .+.|..|++|||.|.
T Consensus 1299 ~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1299 PAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 4789999999999999999996 789999999999997
No 66
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=98.01 E-value=6.9e-06 Score=60.35 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHh
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----------SRDFIEIHNSYET 36 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----------~~~f~~i~~Ay~v 36 (77)
|+++|||+||+.++..||||.+. ++.|..+++||..
T Consensus 401 tp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 401 TPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred CHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999875 2445555555554
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=6.7e-05 Score=45.68 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCCh
Q 048050 2 PVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDP 40 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~ 40 (77)
++.||.|.|++.+..|||+..+.-.-..||||+++|...
T Consensus 70 k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 70 KDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 578999999999999999998877788899999999654
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00011 Score=50.73 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHH-hcCC
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYE-TLSD 39 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~-vL~d 39 (77)
..+++.||..|++++|||.... .+.|.+|.+||. ||+.
T Consensus 61 adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 61 ADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred hhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998775 689999999998 7754
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00018 Score=46.53 Aligned_cols=47 Identities=34% Similarity=0.457 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 4 MALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 4 eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
.++..|--.++++|||+... .+...+|++||.+|.||-.|+.|=...
T Consensus 26 ~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 26 KLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred hhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34446778889999998442 467899999999999999999997654
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00081 Score=43.60 Aligned_cols=49 Identities=33% Similarity=0.415 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 3 VMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.++..|+.+.+.+|||+... -+.+..++.||.+|.+|-.|+.|=....
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred hHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999764 2478899999999999999999876544
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.01 Score=38.43 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----------SRDFIEIHNSYETL 37 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----------~~~f~~i~~Ay~vL 37 (77)
++.+|+++|+++....|||+-.. .+.+++|++||+.+
T Consensus 126 ~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 126 DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999998543 46788888888643
No 72
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.041 Score=38.58 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHhcCChhhHHHHhhh
Q 048050 2 PVMALGAGGSLYEVYHPDFSG--------NSRDFIEIHNSYETLSDPTARAIYDIS 49 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~--------~~~~f~~i~~Ay~vL~d~~~R~~yD~~ 49 (77)
..+|..+|+..++..||++.. ..+.|++|.+||.+|.+...+...|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 6 EDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 467899999999999999873 157799999999999986554455544
No 73
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=92.27 E-value=0.39 Score=29.29 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHhcCChh
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN--------SRDFIEIHNSYETLSDPT 41 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~--------~~~f~~i~~Ay~vL~d~~ 41 (77)
..+++.|.|.+.++.|||.-.. ++-++.|+.-.+.|..+.
T Consensus 8 ~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 8 SPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 3679999999999999997543 455777776666666543
No 74
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=88.54 E-value=1.7 Score=27.09 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=29.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCCh
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDP 40 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~ 40 (77)
+.++|.+.|..|-...+|++..+.-.=..|..|.+.|...
T Consensus 71 ~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 71 SREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988755555677777776533
No 75
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=80.84 E-value=1.2 Score=17.31 Aligned_cols=13 Identities=46% Similarity=0.825 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcC
Q 048050 26 DFIEIHNSYETLS 38 (77)
Q Consensus 26 ~f~~i~~Ay~vL~ 38 (77)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5778888888774
No 76
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=77.22 E-value=3.3 Score=19.22 Aligned_cols=17 Identities=12% Similarity=-0.150 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHhCC
Q 048050 2 PVMALGAGGSLYEVYHP 18 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HP 18 (77)
+++.+.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 36788899999999983
No 77
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=73.51 E-value=12 Score=20.23 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
..+...+.-||+. ...+..+.|.+.|..|++.++...++.
T Consensus 15 ~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 15 RHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4466667789985 346778889999999998766555444
No 78
>COG4907 Predicted membrane protein [Function unknown]
Probab=64.69 E-value=12 Score=28.66 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCChh
Q 048050 27 FIEIHNSYETLSDPT 41 (77)
Q Consensus 27 f~~i~~Ay~vL~d~~ 41 (77)
-.+|-+|+..+-+.+
T Consensus 525 ~dkVvkam~~~~~~e 539 (595)
T COG4907 525 SDKVVKAMRKALDME 539 (595)
T ss_pred HHHHHHHHHHhCcHh
Confidence 356667776554443
No 79
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=64.56 E-value=19 Score=23.95 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcC
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLS 38 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~ 38 (77)
|-|||..|+..+..+|--| ++.-..|..||+.+.
T Consensus 5 SfeEIq~Arn~ll~~y~gd----~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 5 SFEEIQAARNRLLAQYAGD----EKSREAIEAAYDAIL 38 (194)
T ss_pred CHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHH
Confidence 4589999999999988444 456777888998653
No 80
>COG2879 Uncharacterized small protein [Function unknown]
Probab=63.76 E-value=16 Score=20.30 Aligned_cols=15 Identities=20% Similarity=-0.020 Sum_probs=11.8
Q ss_pred HHHHHHHhCCCCCCC
Q 048050 9 GGSLYEVYHPDFSGN 23 (77)
Q Consensus 9 yr~l~~~~HPD~~~~ 23 (77)
|-.-.++.|||+.+-
T Consensus 28 YVehmr~~hPd~p~m 42 (65)
T COG2879 28 YVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHhCcCCCcc
Confidence 556678889998885
No 81
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=59.90 E-value=27 Score=19.07 Aligned_cols=40 Identities=10% Similarity=0.022 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+.++..++.-+|+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~~r~~~~~~~p~~~-~~eisk~~g~~Wk~ls~eeK~~y~~ 53 (77)
T cd01389 14 QDKHAQLKTENPGLT-NNEISRIIGRMWRSESPEVKAYYKE 53 (77)
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 456777888899863 3677888899999998665544333
No 82
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=57.24 E-value=26 Score=18.06 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 9 GGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 9 yr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
.+...+.-||+.. ..+....|.+.|..|++.++....+.
T Consensus 15 ~r~~~~~~~p~~~-~~~i~~~~~~~W~~ls~~eK~~y~~~ 53 (66)
T cd01390 15 QRPKLKKENPDAS-VTEVTKILGEKWKELSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3555666788832 36788889999999987655444433
No 83
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=56.00 E-value=21 Score=25.70 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhhh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDIS 49 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~~ 49 (77)
+..|+...+--||.+ +.++.+.|-+-|+.|++.++|-.+|.-
T Consensus 75 q~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKrPFi~EA 116 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKRPFVDEA 116 (331)
T ss_pred HHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhccHHHHH
Confidence 455666666777775 378999999999999999999888754
No 84
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=54.30 E-value=29 Score=17.69 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
..++...+..||+.. ..+....|.+.|..|++.++....+
T Consensus 13 ~~~~~~~~~~~~~~~-~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 13 QEHRAEVKAENPGLS-VGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445666777888843 3567788899999998765544443
No 85
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=51.63 E-value=32 Score=17.92 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAI 45 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~ 45 (77)
..+...+..||+.. ..+....|.+.|..|++.++...
T Consensus 14 ~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~~eK~~y 50 (69)
T PF00505_consen 14 EKRAKLKEENPDLS-NKEISKILAQMWKNLSEEEKAPY 50 (69)
T ss_dssp HHHHHHHHHSTTST-HHHHHHHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHhcccc-cccchhhHHHHHhcCCHHHHHHH
Confidence 34555666788866 46778888999999976544443
No 86
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.26 E-value=25 Score=24.32 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChh
Q 048050 3 VMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPT 41 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~ 41 (77)
+.+..++.+++..+.|+ .|..|.+||..|++..
T Consensus 182 ~~ld~~l~~~~~~Fd~~------~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 182 EQLDSDLSKVCQDFDPD------KYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHhCCHH------HHHHHHHHHHHHhhhH
Confidence 34556666666666665 7889999999999653
No 87
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=45.23 E-value=41 Score=24.35 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 048050 6 LGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 6 kkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
.+|..-+...+|||..+..+.+..+-.+.+.|.-|..|..+
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~LKeLAspg~Kd~F 84 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFELKELASPGYKDRF 84 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHHHHHC-HHHHTTE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhce
Confidence 36788888999999988877777787788889989888764
No 88
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=39.84 E-value=19 Score=25.27 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhcC
Q 048050 25 RDFIEIHNSYETLS 38 (77)
Q Consensus 25 ~~f~~i~~Ay~vL~ 38 (77)
.+.++||+|+|+|.
T Consensus 128 RRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 128 RRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999874
No 89
>PTZ00199 high mobility group protein; Provisional
Probab=38.90 E-value=78 Score=18.19 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=25.1
Q ss_pred HHHHHHhCCCCCCC-hHHHHHHHHHHHhcCChhhHHHH
Q 048050 10 GSLYEVYHPDFSGN-SRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 10 r~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
|...+.-||+...+ .+....|.+.|..|++.+....+
T Consensus 38 R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~ 75 (94)
T PTZ00199 38 RAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYE 75 (94)
T ss_pred HHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45556678987543 56678889999999866444433
No 90
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=35.97 E-value=46 Score=20.25 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 27 FIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 27 f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.++.+.+++|+||..+.+.+....
T Consensus 3 ~~~~~~~fkaLadptRl~IL~~L~~ 27 (117)
T PRK10141 3 FLLPLQLFKILSDETRLGIVLLLRE 27 (117)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456789999999999998876543
No 91
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=32.71 E-value=70 Score=15.86 Aligned_cols=18 Identities=17% Similarity=-0.081 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhCCCCCCC
Q 048050 4 MALGAGGSLYEVYHPDFSGN 23 (77)
Q Consensus 4 eIkkayr~l~~~~HPD~~~~ 23 (77)
+.+.+|++|...+. ..+.
T Consensus 1 ~a~~~F~~lL~e~~--i~~~ 18 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPY 18 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TT
T ss_pred CHHHHHHHHHHhCC--CCCC
Confidence 46788998888766 4443
No 92
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=32.69 E-value=99 Score=22.06 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=17.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCC
Q 048050 1 MPVMALGAGGSLYEVYHPDFSG 22 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~ 22 (77)
+.+||-+|-+-.--.+|||...
T Consensus 49 ~~~~lw~Ak~l~~Sa~HPDTge 70 (308)
T PF03820_consen 49 TDDELWKAKKLYDSAFHPDTGE 70 (308)
T ss_pred CHHHHHHHHHHhhcccCCCCCC
Confidence 3577888888888889999754
No 93
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.50 E-value=47 Score=21.92 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 048050 25 RDFIEIHNSYE 35 (77)
Q Consensus 25 ~~f~~i~~Ay~ 35 (77)
+.|..||++|.
T Consensus 107 a~f~~LN~aY~ 117 (176)
T COG3195 107 ARFTELNAAYV 117 (176)
T ss_pred HHHHHHHHHHH
Confidence 57888999885
No 94
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=30.34 E-value=1e+02 Score=16.88 Aligned_cols=16 Identities=19% Similarity=-0.051 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCCCCC
Q 048050 8 AGGSLYEVYHPDFSGN 23 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~ 23 (77)
.|-.-.+..|||..+-
T Consensus 27 ~Yv~H~~~~HP~~p~m 42 (65)
T PF04328_consen 27 RYVEHMRRHHPDEPPM 42 (65)
T ss_pred HHHHHHHHHCcCCCCC
Confidence 4666778899999774
No 95
>smart00398 HMG high mobility group.
Probab=29.39 E-value=88 Score=15.96 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 9 GGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 9 yr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
.+...+.-||+.. ..+....|.+.|..|++.++....+
T Consensus 16 ~r~~~~~~~~~~~-~~~i~~~~~~~W~~l~~~ek~~y~~ 53 (70)
T smart00398 16 NRAKIKAENPDLS-NAEISKKLGERWKLLSEEEKAPYEE 53 (70)
T ss_pred HHHHHHHHCcCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455566688754 3567788899999998665544443
No 96
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=29.24 E-value=33 Score=19.10 Aligned_cols=13 Identities=15% Similarity=-0.212 Sum_probs=9.3
Q ss_pred ChhHHHHHHHHHH
Q 048050 1 MPVMALGAGGSLY 13 (77)
Q Consensus 1 ~~~eIkkayr~l~ 13 (77)
|.++|..|||-|+
T Consensus 4 s~eqv~~aFr~lA 16 (69)
T PF08726_consen 4 SAEQVEEAFRALA 16 (69)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHH
Confidence 5677888887763
No 97
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=28.75 E-value=15 Score=18.85 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=9.0
Q ss_pred HHHHHhcCChh
Q 048050 31 HNSYETLSDPT 41 (77)
Q Consensus 31 ~~Ay~vL~d~~ 41 (77)
++||-+|||.+
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 57999999864
No 98
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.82 E-value=88 Score=24.66 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHhCCCC
Q 048050 3 VMALGAGGSLYEVYHPDF 20 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~ 20 (77)
++||.++.++.+.|||.+
T Consensus 404 Eqvk~k~~~m~r~YSP~k 421 (651)
T KOG2320|consen 404 EQVKQKFTAMQRRYSPSK 421 (651)
T ss_pred HHHHHHHHHHHHhhChHH
Confidence 679999999999999984
No 99
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=26.73 E-value=70 Score=16.55 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.1
Q ss_pred HHHHhcCChhhHHHHhhh
Q 048050 32 NSYETLSDPTARAIYDIS 49 (77)
Q Consensus 32 ~Ay~vL~d~~~R~~yD~~ 49 (77)
+..++|+||..+.++...
T Consensus 2 ~i~~aL~~p~R~~Il~~L 19 (61)
T PF12840_consen 2 EIFKALSDPTRLRILRLL 19 (61)
T ss_dssp HHHHHHTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 456889999999998877
No 100
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=25.66 E-value=1.4e+02 Score=20.92 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHhcCC
Q 048050 5 ALGAGGSLYEVYHPD-FSGNSRDFIEIHNSYETLSD 39 (77)
Q Consensus 5 Ikkayr~l~~~~HPD-~~~~~~~f~~i~~Ay~vL~d 39 (77)
++|.|.+||+-.-=. .++..+.++-+-+-|++|.-
T Consensus 98 ~~ksykqla~d~gmqi~~~~~~hm~~~le~y~~Lk~ 133 (268)
T PTZ00043 98 PKKSYKQLARDMGMQIVNEPSEHMLGLLELYEYLKS 133 (268)
T ss_pred chHHHHHHHHHhCceecCCchHHHHHHHHHHHhcCc
Confidence 689999999865332 23447888888999998853
No 101
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=25.19 E-value=86 Score=21.58 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=14.5
Q ss_pred HHhCCCCCCChHHHHHHHHHHHhcCC
Q 048050 14 EVYHPDFSGNSRDFIEIHNSYETLSD 39 (77)
Q Consensus 14 ~~~HPD~~~~~~~f~~i~~Ay~vL~d 39 (77)
++|.=-|..++. ..|.|||.+|.|
T Consensus 93 qqYGLsK~~nEa--~~vIEAYrtLRD 116 (228)
T PF12481_consen 93 QQYGLSKGANEA--MFVIEAYRTLRD 116 (228)
T ss_pred HHhCcCcCcchh--hhHHHHHHHhhc
Confidence 334443333333 348999999986
No 102
>PF00880 Nebulin: Nebulin repeat; InterPro: IPR000900 Nebulin is a 600-800kDa protein found in the thin filaments of striated vertebrate muscle. It is presumed to play a role in binding and stabilising F-actin [], essentially by providing a template for actin polymerisation (i.e., acting as an "actin zipper"). The amino acid sequence shows a uniform repeating pattern along its length, a repeated 35-residue motif constituting up to 97% of the polypeptide. Analysis of individual repeats reveals a progressive N- to C-terminal divergence, coupled with an increasing alpha-helix propensity. This correlates with a higher binding affinity for F-actin at the C terminus. Thus, it is postulated that once the repeats have formed an initiation complex, the whole length of the nebulin molecule may then associate in a highly co-operative process with the thin filament, in a manner similar to the closing of a zipper [].
Probab=25.15 E-value=78 Score=13.96 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHhh
Q 048050 26 DFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 26 ~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
.+....++.+++||-.-|..|+.
T Consensus 4 ~~~~ak~~~~~~Sd~~Yk~~~ek 26 (29)
T PF00880_consen 4 EMVHAKKAAQLQSDVKYKEDYEK 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788899999888888865
No 103
>PRK10455 periplasmic protein; Reviewed
Probab=24.97 E-value=1.1e+02 Score=19.56 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=14.2
Q ss_pred HHHHHHHhcCChhhHHHHhhhc
Q 048050 29 EIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 29 ~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
.-++.|.||+ |+.|..|+...
T Consensus 122 ~~~qiy~vLT-PEQr~q~~~~~ 142 (161)
T PRK10455 122 TQNKIYNVLT-PEQKKQFNANF 142 (161)
T ss_pred HHHHHHHhCC-HHHHHHHHHHH
Confidence 3456788887 66777776543
No 104
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=23.66 E-value=1.6e+02 Score=17.00 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=22.0
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 12 LYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 12 l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
....||-++| .-..|...|-||-+|.++..+-
T Consensus 27 aL~~y~~~Rn----vd~Li~~v~pVLDtPaK~~iw~ 58 (80)
T cd07355 27 ALEDYFQHRN----IDTLIVDVYPVLDTPAKQVIWQ 58 (80)
T ss_pred HHHHHHHhcc----HHHHHhhhhhhcCCHHHHHHHH
Confidence 3344666665 3455778888999998888764
No 105
>PHA02513 V1 structural protein V1; Reviewed
Probab=23.52 E-value=95 Score=19.29 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q 048050 2 PVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSY 34 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay 34 (77)
.++|..|++=.-..|.-+...+..+|.++.+|-
T Consensus 24 ~eqi~ea~kif~qtwdgnii~sa~~fveva~~n 56 (135)
T PHA02513 24 KEQIAEATKIFYQTWDGNIISSARRFVEVAKAN 56 (135)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Confidence 455555555555555444443445555555543
No 106
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=23.38 E-value=1.2e+02 Score=16.75 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhhHHHHhh
Q 048050 27 FIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 27 f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
.......|.||+ |+.|..+|.
T Consensus 78 ~~~~~~~~~vLt-~eQk~~~~~ 98 (100)
T PF07813_consen 78 AKAQHALYAVLT-PEQKEKFDQ 98 (100)
T ss_dssp HHHHHHHHTTS--HHHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHH
Confidence 344556777786 667777764
No 107
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.23 E-value=78 Score=19.85 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHhCCC
Q 048050 3 VMALGAGGSLYEVYHPD 19 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD 19 (77)
.-||.||-+|..-++|=
T Consensus 22 SalKaAY~qLQ~Ah~Py 38 (131)
T PF04859_consen 22 SALKAAYAQLQQAHSPY 38 (131)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 46899999999998886
No 108
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=21.67 E-value=1.4e+02 Score=19.20 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=8.4
Q ss_pred HHHHHhCCCCCC
Q 048050 11 SLYEVYHPDFSG 22 (77)
Q Consensus 11 ~l~~~~HPD~~~ 22 (77)
.-++..|||...
T Consensus 65 ~~~l~~HP~lg~ 76 (166)
T PRK13798 65 DEALAGHPRIGE 76 (166)
T ss_pred HHHHHhCCcccC
Confidence 345678999864
No 109
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.49 E-value=1.8e+02 Score=16.66 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 5 ALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 5 Ikkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
|-+.+..++..+++ .+.+.+..|.+.| +.||.-+..||
T Consensus 62 l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 62 LAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp HHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhcc
Confidence 44455556666665 2346788888888 77888888888
No 110
>PRK09498 sifA secreted effector protein SifA; Reviewed
Probab=21.46 E-value=2.5e+02 Score=20.34 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
+|..=+...+|||..+..+....+-+..+.|.-|..|..+-.
T Consensus 45 eA~~CI~eLchp~~~~trE~i~~~F~~Lk~LA~p~y~dnfq~ 86 (336)
T PRK09498 45 KADRCLHEMLFADRAPTRERLTEIFFELKELACASQRDRFQV 86 (336)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhceee
Confidence 466777888999999886666666666778888877765433
No 111
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=21.33 E-value=1.1e+02 Score=16.75 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=13.1
Q ss_pred HHHHHHhc---CC-hhhHHHHhhh
Q 048050 30 IHNSYETL---SD-PTARAIYDIS 49 (77)
Q Consensus 30 i~~Ay~vL---~d-~~~R~~yD~~ 49 (77)
|+++.+.| .- ...|+.||-.
T Consensus 27 l~~ia~~l~~~~~k~~~RRlYDI~ 50 (71)
T PF02319_consen 27 LNEIADKLISENVKTQRRRLYDII 50 (71)
T ss_dssp HHHHHHHCHHHCCHHHCHHHHHHH
T ss_pred HHHHHHHHcccccccccchhhHHH
Confidence 45556666 33 3789999954
No 112
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=21.07 E-value=1.9e+02 Score=18.40 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=7.9
Q ss_pred HHHHhCCCCCC
Q 048050 12 LYEVYHPDFSG 22 (77)
Q Consensus 12 l~~~~HPD~~~ 22 (77)
.++..|||...
T Consensus 54 ~ll~~HP~Lg~ 64 (157)
T TIGR03164 54 ALIRAHPDLAG 64 (157)
T ss_pred HHHHhCCcccc
Confidence 44778999864
No 113
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=20.90 E-value=43 Score=25.51 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=14.0
Q ss_pred hCCC--------CCCChHHHHHHHHHHHhcCC
Q 048050 16 YHPD--------FSGNSRDFIEIHNSYETLSD 39 (77)
Q Consensus 16 ~HPD--------~~~~~~~f~~i~~Ay~vL~d 39 (77)
.||| .++--..-.+|.|||.+++.
T Consensus 8 QHPDN~~~Pff~~~~~i~~~dEV~EA~~a~s~ 39 (491)
T PF14010_consen 8 QHPDNASVPFFASTPVISGEDEVEEAYYAFSH 39 (491)
T ss_dssp --ST--------SS--B-TTTHHHHHHHHHSS
T ss_pred CCCCcccccccccCCccccchhHHHHHHHHHh
Confidence 5999 44433455679999988873
No 114
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=20.76 E-value=1.5e+02 Score=18.88 Aligned_cols=12 Identities=17% Similarity=-0.014 Sum_probs=8.4
Q ss_pred HHHHHhCCCCCC
Q 048050 11 SLYEVYHPDFSG 22 (77)
Q Consensus 11 ~l~~~~HPD~~~ 22 (77)
.-++..|||...
T Consensus 55 ~~~l~~HP~lg~ 66 (158)
T TIGR03180 55 FEALAGHPRIGE 66 (158)
T ss_pred HHHHHhCCcccC
Confidence 345677999864
No 115
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=20.41 E-value=1.4e+02 Score=19.43 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhcCChhhHH
Q 048050 24 SRDFIEIHNSYETLSDPTARA 44 (77)
Q Consensus 24 ~~~f~~i~~Ay~vL~d~~~R~ 44 (77)
+.....|.++.++|.||..+.
T Consensus 65 tkrLa~ireeLE~l~dP~RkE 85 (159)
T PF04949_consen 65 TKRLAEIREELEVLADPMRKE 85 (159)
T ss_pred HHHHHHHHHHHHhhccchHHH
Confidence 356788999999999996554
No 116
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=20.19 E-value=1.5e+02 Score=15.51 Aligned_cols=20 Identities=10% Similarity=-0.225 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHHhCCCC
Q 048050 1 MPVMALGAGGSLYEVYHPDF 20 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~ 20 (77)
+++|-..||...++++|...
T Consensus 33 t~eeAa~Ayd~a~~~~~g~~ 52 (64)
T smart00380 33 TAEEAARAYDRAAFKFRGRS 52 (64)
T ss_pred CHHHHHHHHHHHHHHhcCCc
Confidence 46777888988888888754
No 117
>KOG3935 consensus Predicted glycerate kinase [Carbohydrate transport and metabolism]
Probab=20.01 E-value=1.4e+02 Score=22.16 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=22.2
Q ss_pred cCChhhHHHHhhhccc-----------cccchhhccCCccc-cCCCCCCCCC
Q 048050 37 LSDPTARAIYDISLEE-----------DENNVVWVFGSVRV-KMGNQSRRGR 76 (77)
Q Consensus 37 L~d~~~R~~yD~~~~~-----------~~~~~~~~f~~~~f-~~g~~~~~~~ 76 (77)
|.||+.|..|-....+ +.-.....|||.+. ...|.|++||
T Consensus 296 ~~D~QL~E~~AE~s~Pt~~~Ale~~~~~~~Pi~Ll~GGEptv~lsg~G~GGR 347 (446)
T KOG3935|consen 296 LKDPQLREKYAERSYPTFRRALENLTIENYPIALLFGGEPTVHLSGPGKGGR 347 (446)
T ss_pred ccChHHHHHHHhhcchHHHHHHHhhhhccCCeEEEeCCCceEEecCCCCCcc
Confidence 5688888887754332 12222334665544 5566666665
Done!