Query 048050
Match_columns 77
No_of_seqs 125 out of 1011
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o37_A Protein SIS1; HSP40, J- 99.8 3.4E-21 1.2E-25 112.8 6.3 55 1-55 21-76 (92)
2 2och_A Hypothetical protein DN 99.8 1.6E-19 5.6E-24 101.4 6.7 51 1-51 21-72 (73)
3 1hdj_A Human HSP40, HDJ-1; mol 99.8 2.8E-19 9.4E-24 101.3 7.1 53 1-53 16-71 (77)
4 2yua_A Williams-beuren syndrom 99.8 2.8E-19 9.7E-24 105.8 6.9 56 1-56 30-89 (99)
5 2dn9_A DNAJ homolog subfamily 99.8 3.1E-19 1.1E-23 101.5 6.1 53 1-53 20-76 (79)
6 2ctp_A DNAJ homolog subfamily 99.8 3.8E-19 1.3E-23 101.0 6.0 53 1-53 20-75 (78)
7 2ej7_A HCG3 gene; HCG3 protein 99.8 3.6E-19 1.2E-23 101.8 5.8 52 1-52 22-78 (82)
8 2cug_A Mkiaa0962 protein; DNAJ 99.8 4.6E-19 1.6E-23 102.9 6.0 52 1-52 30-84 (88)
9 2ctr_A DNAJ homolog subfamily 99.8 6.7E-19 2.3E-23 102.1 5.5 52 1-52 20-74 (88)
10 2lgw_A DNAJ homolog subfamily 99.8 9E-19 3.1E-23 103.9 5.3 53 1-53 15-72 (99)
11 2dmx_A DNAJ homolog subfamily 99.8 1.3E-18 4.3E-23 101.6 5.8 53 1-53 22-79 (92)
12 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 6.7E-19 2.3E-23 105.6 4.3 60 1-60 29-95 (109)
13 2ctw_A DNAJ homolog subfamily 99.8 2.2E-18 7.7E-23 103.5 6.6 53 1-53 30-86 (109)
14 2ctq_A DNAJ homolog subfamily 99.7 1.1E-18 3.8E-23 105.2 5.1 53 1-53 33-89 (112)
15 1wjz_A 1700030A21RIK protein; 99.7 1.1E-18 3.8E-23 101.9 4.1 52 1-52 29-90 (94)
16 1bq0_A DNAJ, HSP40; chaperone, 99.7 1.1E-18 3.8E-23 103.8 3.1 53 1-53 16-72 (103)
17 2pf4_E Small T antigen; PP2A, 99.7 1.9E-18 6.4E-23 111.6 1.0 50 2-51 27-76 (174)
18 3apq_A DNAJ homolog subfamily 99.7 2.1E-17 7.2E-22 106.7 5.8 53 1-53 15-71 (210)
19 2l6l_A DNAJ homolog subfamily 99.7 2.9E-17 9.9E-22 103.5 5.8 51 1-51 23-83 (155)
20 1faf_A Large T antigen; J doma 99.7 1.7E-17 5.7E-22 94.9 3.5 46 1-46 26-71 (79)
21 1gh6_A Large T antigen; tumor 99.7 1.9E-18 6.7E-23 104.9 -0.6 48 3-50 25-72 (114)
22 2ys8_A RAB-related GTP-binding 99.6 8.4E-17 2.9E-21 93.8 3.4 44 1-44 40-86 (90)
23 1fpo_A HSC20, chaperone protei 99.6 1.5E-16 5.2E-21 102.1 4.8 51 1-51 16-75 (171)
24 3uo3_A J-type CO-chaperone JAC 99.6 7.4E-17 2.5E-21 104.5 2.6 50 1-50 31-81 (181)
25 3lz8_A Putative chaperone DNAJ 99.6 2.8E-17 9.7E-22 114.4 0.0 50 1-50 41-93 (329)
26 3bvo_A CO-chaperone protein HS 99.6 2.4E-16 8.1E-21 103.9 4.4 50 1-50 58-116 (207)
27 3hho_A CO-chaperone protein HS 99.6 3.2E-16 1.1E-20 100.8 4.7 50 2-51 20-78 (174)
28 1iur_A KIAA0730 protein; DNAJ 99.6 6.1E-16 2.1E-20 90.1 3.5 43 1-43 29-76 (88)
29 2guz_A Mitochondrial import in 99.6 3.3E-16 1.1E-20 87.8 2.2 43 1-43 28-70 (71)
30 3ag7_A Putative uncharacterize 99.6 2.1E-16 7.1E-21 94.9 1.0 41 1-41 53-104 (106)
31 1n4c_A Auxilin; four helix bun 99.5 8E-16 2.7E-20 99.9 1.4 46 1-46 130-182 (182)
32 2qwo_B Putative tyrosine-prote 99.5 2E-15 6.9E-20 88.7 1.2 39 1-39 46-91 (92)
33 3apo_A DNAJ homolog subfamily 99.5 3.4E-15 1.1E-19 111.0 0.4 53 1-53 34-90 (780)
34 2y4t_A DNAJ homolog subfamily 99.1 1.1E-10 3.9E-15 79.0 4.2 47 2-48 396-449 (450)
35 2guz_B Mitochondrial import in 98.7 2.9E-08 9.8E-13 54.7 4.3 39 1-39 20-58 (65)
36 2d7l_A WD repeat and HMG-box D 74.8 5 0.00017 21.9 3.9 42 7-48 18-59 (81)
37 2pzi_A Probable serine/threoni 71.1 4.3 0.00015 29.6 3.8 30 3-36 646-675 (681)
38 4a3n_A Transcription factor SO 70.3 9.1 0.00031 19.6 4.4 39 7-46 15-53 (71)
39 2b7e_A PRE-mRNA processing pro 68.6 11 0.00037 19.8 5.2 49 2-50 2-56 (59)
40 2eqz_A High mobility group pro 68.4 12 0.00041 20.2 5.0 40 8-47 29-69 (86)
41 3f27_D Transcription factor SO 64.9 14 0.00047 19.6 4.4 40 7-47 19-58 (83)
42 1ckt_A High mobility group 1 p 64.6 13 0.00043 19.1 5.4 40 8-47 15-55 (71)
43 1i11_A Transcription factor SO 62.5 15 0.00053 19.4 4.5 41 7-48 17-57 (81)
44 1r4v_A Hypothetical protein AQ 61.6 19 0.00064 22.8 4.8 30 7-36 140-169 (171)
45 2crj_A SWI/SNF-related matrix- 57.6 21 0.00072 19.4 5.0 41 7-48 20-60 (92)
46 1uzc_A Hypothetical protein FL 57.5 20 0.00069 19.2 5.3 50 1-50 13-66 (71)
47 1wgf_A Upstream binding factor 56.9 18 0.00063 19.6 3.9 40 8-48 34-73 (90)
48 3u85_B Histone-lysine N-methyl 56.9 6.6 0.00023 16.3 1.5 18 59-76 3-20 (21)
49 2yrq_A High mobility group pro 55.9 23 0.0008 21.4 4.6 40 8-47 29-69 (173)
50 1aab_A High mobility group pro 54.6 15 0.00052 19.5 3.2 40 8-47 21-61 (83)
51 1wz6_A HMG-box transcription f 54.5 22 0.00077 18.8 4.8 40 7-47 20-59 (82)
52 1gt0_D Transcription factor SO 53.8 22 0.00075 18.7 3.8 40 7-47 15-54 (80)
53 2cs1_A PMS1 protein homolog 1; 52.8 26 0.0009 19.0 4.2 40 8-48 21-60 (92)
54 2e6o_A HMG box-containing prot 52.5 26 0.00088 18.8 4.0 39 7-46 30-68 (87)
55 2lef_A LEF-1 HMG, protein (lym 52.5 25 0.00085 18.8 3.9 39 7-47 15-53 (86)
56 4euw_A Transcription factor SO 51.3 29 0.001 19.5 4.2 40 7-47 42-81 (106)
57 1hry_A Human SRY; DNA, DNA-bin 50.8 25 0.00085 18.2 4.9 38 7-45 17-54 (76)
58 1ug2_A 2610100B20RIK gene prod 50.5 9.1 0.00031 22.0 1.9 20 1-20 69-88 (95)
59 2co9_A Thymus high mobility gr 50.3 27 0.00091 19.5 3.9 39 8-47 31-69 (102)
60 3u2b_C Transcription factor SO 49.7 26 0.00091 18.2 4.3 39 7-46 15-53 (79)
61 3tq6_A Transcription factor A, 48.4 31 0.0011 21.9 4.4 40 7-47 22-61 (214)
62 3tmm_A Transcription factor A, 48.2 30 0.001 22.3 4.4 39 8-47 55-93 (238)
63 3nm9_A HMG-D, high mobility gr 47.7 28 0.00097 17.9 4.3 37 7-47 16-52 (73)
64 1j46_A SRY, sex-determining re 47.3 31 0.0011 18.4 4.0 38 7-45 17-54 (85)
65 1wwi_A Hypothetical protein TT 47.3 41 0.0014 20.7 4.6 29 7-35 116-145 (148)
66 1hme_A High mobility group pro 46.5 30 0.001 17.9 4.6 38 8-46 20-57 (77)
67 1k99_A Upstream binding factor 41.9 44 0.0015 18.5 5.5 40 8-48 24-63 (99)
68 1r5q_A KAI A, circadian oscill 39.9 52 0.0018 19.0 3.9 32 3-34 12-44 (102)
69 2gzk_A Sex-determining region 35.9 68 0.0023 18.9 4.6 37 10-47 20-56 (159)
70 1cf7_A Protein (transcription 35.7 22 0.00074 19.3 1.8 20 30-49 33-52 (76)
71 2dod_A Transcription elongatio 34.9 58 0.002 17.8 4.5 51 1-51 15-68 (82)
72 2cqn_A Formin-binding protein 33.3 59 0.002 17.5 4.0 49 3-52 9-64 (77)
73 1v2z_A Circadian clock protein 32.4 65 0.0022 18.8 3.6 20 3-22 19-38 (111)
74 1qqr_A Streptokinase domain B; 30.1 35 0.0012 20.8 2.3 18 2-19 46-63 (138)
75 3rh2_A Hypothetical TETR-like 27.6 61 0.0021 19.0 3.1 9 40-48 194-202 (212)
76 1ny9_A Transcriptional activat 26.1 1E+02 0.0035 17.9 5.4 26 24-51 99-124 (143)
77 2vkj_A TM1634; membrane protei 25.4 73 0.0025 18.3 2.9 22 25-46 11-34 (106)
78 1tuz_A Diacylglycerol kinase a 25.3 52 0.0018 19.2 2.4 42 1-42 23-69 (118)
79 3fgh_A Transcription factor A, 24.7 63 0.0022 16.1 2.5 23 24-46 27-49 (67)
80 2pk2_A Cyclin-T1, protein TAT; 23.4 41 0.0014 23.0 1.9 10 4-13 233-242 (358)
81 2lhj_A High mobility group pro 23.3 16 0.00054 20.2 -0.2 36 9-44 37-73 (97)
82 3oeo_A Spheroplast protein Y; 23.0 72 0.0025 18.9 2.8 25 26-51 96-120 (138)
83 3kp1_E D-ornithine aminomutase 22.6 64 0.0022 19.2 2.4 16 1-16 18-33 (121)
84 3hm5_A DNA methyltransferase 1 22.0 70 0.0024 18.0 2.4 16 1-16 68-83 (93)
85 1o7d_C Lysosomal alpha-mannosi 21.7 84 0.0029 18.5 2.9 20 4-23 2-21 (159)
86 2zkz_A Transcriptional repress 21.1 39 0.0013 18.3 1.2 24 25-48 12-35 (99)
87 2yuk_A Myeloid/lymphoid or mix 20.8 1.1E+02 0.0037 16.9 3.0 32 10-44 38-69 (90)
88 4iej_A DNA methyltransferase 1 20.8 77 0.0026 17.9 2.4 17 1-17 68-84 (93)
No 1
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.4e-21 Score=112.80 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=50.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHhcCChhhHHHHhhhcccccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-SRDFIEIHNSYETLSDPTARAIYDISLEEDEN 55 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~~~ 55 (77)
+.++||+||++|++++|||+++. .+.|++|++||+||+||.+|..||.++.....
T Consensus 21 s~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 76 (92)
T 2o37_A 21 NEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAAR 76 (92)
T ss_dssp CHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence 46899999999999999999975 78999999999999999999999999876543
No 2
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.80 E-value=1.6e-19 Score=101.44 Aligned_cols=51 Identities=31% Similarity=0.389 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.++||+||++|++++|||++++ .+.|+.|++||++|+||..|..||.+|.
T Consensus 21 ~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 21 SDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 46899999999999999999986 6899999999999999999999999875
No 3
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.79 E-value=2.8e-19 Score=101.32 Aligned_cols=53 Identities=34% Similarity=0.394 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+||++|++++|||++++ .+.|+.|++||++|+||..|..||.++...
T Consensus 16 s~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 16 SDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 56899999999999999999875 689999999999999999999999988653
No 4
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=105.77 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhccccccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEEDENN 56 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~~~~ 56 (77)
+.++||+||++|++++|||+++. .+.|+.|++||+||+||.+|..||..+...+..
T Consensus 30 s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e~~ 89 (99)
T 2yua_A 30 TQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDL 89 (99)
T ss_dssp CHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHHHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccccccc
Confidence 46899999999999999999975 679999999999999999999999987665544
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-19 Score=101.46 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+||++|++++|||+++. .+.|+.|++||++|+||.+|..||.++...
T Consensus 20 ~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 20 SQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 46899999999999999999975 589999999999999999999999988653
No 6
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.8e-19 Score=100.95 Aligned_cols=53 Identities=26% Similarity=0.259 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+||++|++++|||+++. .+.|+.|++||++|+||..|..||.++...
T Consensus 20 s~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 20 SDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 46899999999999999999975 689999999999999999999999988653
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=101.79 Aligned_cols=52 Identities=31% Similarity=0.360 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.++||+||++|++++|||+++. .+.|+.|++||++|+||..|..||.++..
T Consensus 22 s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 22 SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp CHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 46899999999999999999986 36899999999999999999999998864
No 8
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=4.6e-19 Score=102.85 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.++||+||++|++++|||+++. .+.|+.|++||++|+||..|..||.++..
T Consensus 30 s~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 30 SQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp CHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 46899999999999999999875 68999999999999999999999998864
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=102.14 Aligned_cols=52 Identities=35% Similarity=0.352 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.++||+||++|++++|||+++. .+.|+.|++||++|+||..|..||..+..
T Consensus 20 s~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (88)
T 2ctr_A 20 SERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS 74 (88)
T ss_dssp CHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 46899999999999999999986 67999999999999999999999998754
No 10
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.76 E-value=9e-19 Score=103.90 Aligned_cols=53 Identities=30% Similarity=0.328 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+||++|++++|||+++. .+.|+.|++||++|+||.+|..||.++...
T Consensus 15 s~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 15 SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 46899999999999999999985 478999999999999999999999987654
No 11
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=101.56 Aligned_cols=53 Identities=28% Similarity=0.384 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+||++|++++|||+++. .+.|+.|++||++|+||.+|..||..+...
T Consensus 22 s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 22 SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 46899999999999999999985 478999999999999999999999987643
No 12
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.75 E-value=6.7e-19 Score=105.56 Aligned_cols=60 Identities=28% Similarity=0.282 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHhcCChhhHHHHhhhccccccchhhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-------SRDFIEIHNSYETLSDPTARAIYDISLEEDENNVVWV 60 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~~~~~~~~ 60 (77)
+.++||+|||+|++++|||++++ .+.|++|++||++|+||.+|..||..+....+.+..+
T Consensus 29 s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~~~~~~~~ 95 (109)
T 2qsa_A 29 DKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNY 95 (109)
T ss_dssp CHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCchHHHHHH
Confidence 46899999999999999999975 5799999999999999999999999987665544433
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=2.2e-18 Score=103.54 Aligned_cols=53 Identities=30% Similarity=0.300 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+||++|++++|||+++. .+.|+.|++||+||+||.+|..||.++...
T Consensus 30 s~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~ 86 (109)
T 2ctw_A 30 TSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG 86 (109)
T ss_dssp CHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence 46899999999999999999985 579999999999999999999999988653
No 14
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=105.24 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+|||+|++++|||++++ .+.|++|++||+||+||.+|..||.++...
T Consensus 33 s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~ 89 (112)
T 2ctq_A 33 SVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ 89 (112)
T ss_dssp CHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence 46899999999999999999985 689999999999999999999999998664
No 15
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.74 E-value=1.1e-18 Score=101.90 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=47.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHhcCChhhHHHHhhhccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----------SRDFIEIHNSYETLSDPTARAIYDISLEE 52 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~ 52 (77)
+.++||+||++|++++|||+++. .+.|+.|++||+||+||.+|..||..+..
T Consensus 29 s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 29 NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 46899999999999999999863 47999999999999999999999998754
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.73 E-value=1.1e-18 Score=103.76 Aligned_cols=53 Identities=32% Similarity=0.349 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+||++|++++|||+++. .+.|++|++||+||+||.+|..||.++...
T Consensus 16 s~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 16 EEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 56899999999999999999874 579999999999999999999999998764
No 17
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.70 E-value=1.9e-18 Score=111.62 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
.++||+|||++++++|||++++++.|++|++||+||+||.+|+.||.++.
T Consensus 27 ~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 27 IPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 58999999999999999999989999999999999999999999999984
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.70 E-value=2.1e-17 Score=106.67 Aligned_cols=53 Identities=32% Similarity=0.337 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
+.++||+|||+|++++|||+++. .+.|+.|++||++|+||.+|..||.++...
T Consensus 15 ~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 15 SSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 46899999999999999999974 579999999999999999999999998653
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=103.50 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.++||+|||+|++++|||+++. .+.|+.|++||+||+||.+|+.||..+.
T Consensus 23 ~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 23 NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 46899999999999999999875 2799999999999999999999998764
No 20
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.68 E-value=1.7e-17 Score=94.90 Aligned_cols=46 Identities=15% Similarity=0.030 Sum_probs=42.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
+.++||+|||+|++++|||++++.+.|++|++||++|+|+..|..+
T Consensus 26 ~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 26 DFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp CHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4689999999999999999999899999999999999999888773
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.68 E-value=1.9e-18 Score=104.94 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 3 VMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
++||+|||+|++++|||++++.+.|++|++||+||+||.+|+.||.++
T Consensus 25 ~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 25 PLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred HHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 899999999999999999999999999999999999999999999755
No 22
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.4e-17 Score=93.78 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=40.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHH
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARA 44 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~ 44 (77)
+.++||+|||+|++++|||+++. .+.|++|++||++|+||.+|.
T Consensus 40 s~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 40 SRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 46899999999999999999965 689999999999999998775
No 23
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.64 E-value=1.5e-16 Score=102.11 Aligned_cols=51 Identities=27% Similarity=0.288 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.++||++||+|++++|||++++ .+.|..|++||+||+||.+|+.||..+.
T Consensus 16 ~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 16 DTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 46899999999999999999875 2589999999999999999999998754
No 24
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.63 E-value=7.4e-17 Score=104.51 Aligned_cols=50 Identities=26% Similarity=0.331 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-SRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
+.++||+|||+|++++|||++++ .+.|+.|++||+||+||.+|..||..+
T Consensus 31 ~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 31 DQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 46799999999999999999984 789999999999999999999999865
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.62 E-value=2.8e-17 Score=114.39 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---SRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
+.+|||+|||+|+++||||++++ +++|++|++||++|+||.+|+.||.++
T Consensus 41 s~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 41 DLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp -----------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 46899999999999999999875 679999999999999999999999974
No 26
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=103.93 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISL 50 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~ 50 (77)
++++||++||+|++++|||++++ .+.|+.|++||+||+||.+|+.||..+
T Consensus 58 ~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l 116 (207)
T 3bvo_A 58 DTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKL 116 (207)
T ss_dssp CHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 36799999999999999999874 257999999999999999999999653
No 27
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.62 E-value=3.2e-16 Score=100.80 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN---------SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~---------~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
.++||++||+|++++|||++++ .+.|..|++||+||+||.+|..||..+.
T Consensus 20 ~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp HHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 6899999999999999999875 2689999999999999999999998654
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.59 E-value=6.1e-16 Score=90.13 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=39.2
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHhcCChhhH
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----SRDFIEIHNSYETLSDPTAR 43 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----~~~f~~i~~Ay~vL~d~~~R 43 (77)
+.++||+|||+|+++||||++++ .+.|++|++||++|+|...|
T Consensus 29 s~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 29 PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 46899999999999999999986 47999999999999998666
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.3e-16 Score=87.76 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=39.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhH
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTAR 43 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R 43 (77)
+.++||+|||+|++++|||++.+.+.|++|++||++|+++..|
T Consensus 28 ~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 28 TKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 4689999999999999999988899999999999999987654
No 30
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.58 E-value=2.1e-16 Score=94.87 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=36.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHhcCChh
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-----------SRDFIEIHNSYETLSDPT 41 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-----------~~~f~~i~~Ay~vL~d~~ 41 (77)
|+++||+|||++++++|||++++ ++.|+.|++||++|+|+.
T Consensus 53 s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 53 EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 57899999999999999999762 468999999999999985
No 31
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.55 E-value=8e-16 Score=99.91 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHhcCChhhHHHH
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-------SRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-------~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
++++||+|||++++++|||++++ .+.|+.|++||+||+|+.+|..|
T Consensus 130 s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 57899999999999999999874 35899999999999999999866
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.51 E-value=2e-15 Score=88.69 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=34.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHhcCC
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-------SRDFIEIHNSYETLSD 39 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-------~~~f~~i~~Ay~vL~d 39 (77)
|+++||+|||++++++|||++++ ++.|+.|++||+||.+
T Consensus 46 s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 46 TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999875 3589999999999964
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.48 E-value=3.4e-15 Score=111.01 Aligned_cols=53 Identities=32% Similarity=0.337 Sum_probs=28.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHhcCChhhHHHHhhhcccc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN----SRDFIEIHNSYETLSDPTARAIYDISLEED 53 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~----~~~f~~i~~Ay~vL~d~~~R~~yD~~~~~~ 53 (77)
|.++||+|||+|++++|||++++ .+.|+.|++||++|+||.+|+.||.++...
T Consensus 34 ~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 34 SSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp CHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 56899999999999999999864 578999999999999999999999998653
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.05 E-value=1.1e-10 Score=79.04 Aligned_cols=47 Identities=34% Similarity=0.424 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN-------SRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~-------~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
.++|+++|+++++++|||+.+. .+.|+.|.+||++|+||++|..||.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 4789999999999999999885 3589999999999999999999996
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.66 E-value=2.9e-08 Score=54.68 Aligned_cols=39 Identities=15% Similarity=-0.059 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCC
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSD 39 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d 39 (77)
+.++|+++||+|....|||+..+......|++|.++|..
T Consensus 20 ~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 20 NMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp SHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999999999888889999999999853
No 36
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.83 E-value=5 Score=21.91 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
..+|...+.-||+.....+..+.|.+.|..|++.++....+.
T Consensus 18 ~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 18 EENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356777888899986236788889999999997765554443
No 37
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=71.11 E-value=4.3 Score=29.62 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHh
Q 048050 3 VMALGAGGSLYEVYHPDFSGNSRDFIEIHNSYET 36 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~~~~~~~f~~i~~Ay~v 36 (77)
.+|++|||++++..+++ .+.+..|..|+.|
T Consensus 646 ~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 646 LGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp HHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 46999999999966665 4688888988876
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=70.32 E-value=9.1 Score=19.59 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 15 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~ 53 (71)
T 4a3n_A 15 KDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFV 53 (71)
T ss_dssp HHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345667777788865 367788889999999866544433
No 39
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=68.64 E-value=11 Score=19.78 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhCCCCCCC-hHHHHHH---HHHHHhcCC-hh-hHHHHhhhc
Q 048050 2 PVMALGAGGSLYEVYHPDFSGN-SRDFIEI---HNSYETLSD-PT-ARAIYDISL 50 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD~~~~-~~~f~~i---~~Ay~vL~d-~~-~R~~yD~~~ 50 (77)
++|..+||.+|.+...=|..=+ ++....| ..-|-+|.| |. ++..|+.+.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 5788999999999875444433 6677777 358999997 76 556677664
No 40
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.44 E-value=12 Score=20.19 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCC-hHHHHHHHHHHHhcCChhhHHHHh
Q 048050 8 AGGSLYEVYHPDFSGN-SRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
..|...+.-||+...+ .+..+.|.+.|..|++.++....+
T Consensus 29 ~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (86)
T 2eqz_A 29 TCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDE 69 (86)
T ss_dssp HHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4466667779997643 678888999999998765544433
No 41
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=64.91 E-value=14 Score=19.62 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+.+|..++.-||+.. ..+....|.+.|..|++.++....+
T Consensus 19 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 58 (83)
T 3f27_D 19 KDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVE 58 (83)
T ss_dssp HHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 455677777899865 3577888899999998665444433
No 42
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=64.55 E-value=13 Score=19.10 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCCCCC-hHHHHHHHHHHHhcCChhhHHHHh
Q 048050 8 AGGSLYEVYHPDFSGN-SRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~-~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
..|...+.-||+...+ .+..+.|.+.|..|++.++....+
T Consensus 15 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 55 (71)
T 1ckt_A 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3455667779997643 678888999999999876554433
No 43
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=62.53 E-value=15 Score=19.39 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
+.++...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 17 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 17 KDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 345666667788754 36778889999999998766555443
No 44
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=61.55 E-value=19 Score=22.81 Aligned_cols=30 Identities=0% Similarity=-0.134 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYET 36 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~v 36 (77)
-++-+..+..|||++|..+.+....+.+..
T Consensus 140 valARv~K~l~Pernp~~ehwE~a~~v~Dl 169 (171)
T 1r4v_A 140 LMHADVIKKATGERKPSREAMEFVAQIVDK 169 (171)
T ss_dssp HHHHHHHHHHCCCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 456677788999999987777666655543
No 45
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=57.62 E-value=21 Score=19.42 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 20 NERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345666777788854 36778889999999998765554443
No 46
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=57.54 E-value=20 Score=19.16 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-hHHHHHHH--HHHHhcCChh-hHHHHhhhc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-SRDFIEIH--NSYETLSDPT-ARAIYDISL 50 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-~~~f~~i~--~Ay~vL~d~~-~R~~yD~~~ 50 (77)
+.++.+.+|++|....+=+-.-. ++....|. .-|.+|.++. ++..|+.+.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 46899999999999886443333 34444443 3677887754 455566553
No 47
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=56.89 E-value=18 Score=19.64 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 34 ~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 73 (90)
T 1wgf_A 34 EKRRQLQEERPELS-ESELTRLLARMWNDLSEKKKAKYKAR 73 (90)
T ss_dssp HTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34666677788843 36778889999999987655444443
No 48
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=56.89 E-value=6.6 Score=16.28 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=7.1
Q ss_pred hccCCccccCCCCCCCCC
Q 048050 59 WVFGSVRVKMGNQSRRGR 76 (77)
Q Consensus 59 ~~f~~~~f~~g~~~~~~~ 76 (77)
|.|..-+.+-++++.++|
T Consensus 3 wrfparpg~s~~sg~g~r 20 (21)
T 3u85_B 3 WRFPARPGTTGGGGGGGR 20 (26)
T ss_pred cccccCCCcccCCCcccc
Confidence 445433333333333333
No 49
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.92 E-value=23 Score=21.45 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCC-CChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 8 AGGSLYEVYHPDFS-GNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 8 ayr~l~~~~HPD~~-~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
..|...+.-||+.. ...+....|.+.|..|++.+.....+
T Consensus 29 ~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 69 (173)
T 2yrq_A 29 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 69 (173)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45666777899963 34678889999999999776544443
No 50
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=54.58 E-value=15 Score=19.50 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCC-ChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 8 AGGSLYEVYHPDFSG-NSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 8 ayr~l~~~~HPD~~~-~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
..|...+.-||+... ..+....|.+.|..|++.++....+
T Consensus 21 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~ 61 (83)
T 1aab_A 21 TSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61 (83)
T ss_dssp HHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345566667898753 3577888999999999776554443
No 51
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=54.48 E-value=22 Score=18.75 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 20 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 59 (82)
T 1wz6_A 20 KRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQKYTD 59 (82)
T ss_dssp HHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 445667777889854 3577888999999998765444333
No 52
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=53.82 E-value=22 Score=18.66 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+..|...+.-||+.. ..+....|.+.|..|++.++....+
T Consensus 15 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~ 54 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRPFID 54 (80)
T ss_dssp HHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345666667788853 3577888999999998765444433
No 53
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.82 E-value=26 Score=19.02 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 21 ~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 21 DHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45666677788864 35778888999999987655544443
No 54
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=52.51 E-value=26 Score=18.84 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....
T Consensus 30 ~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~ 68 (87)
T 2e6o_A 30 KKYRVEYTQMYPGKD-NRAISVILGDRWKKMKNEERRMYT 68 (87)
T ss_dssp HHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 345666677788853 357778889999999866544433
No 55
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=52.47 E-value=25 Score=18.79 Aligned_cols=39 Identities=10% Similarity=-0.112 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+..|...+.-||+.. ..+....|.+.|..|++.+. ..|.
T Consensus 15 ~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK-~~y~ 53 (86)
T 2lef_A 15 KEMRANVVAESTLKE-SAAINQILGRRWHALSREEQ-AKYY 53 (86)
T ss_dssp HHHHHHHHHHSSCCC-HHHHHHHHHHHHTTSCHHHH-HHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHH-HHHH
Confidence 345666677788863 36778889999999986654 4443
No 56
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=51.29 E-value=29 Score=19.48 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 42 ~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~ 81 (106)
T 4euw_A 42 QAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRPFVE 81 (106)
T ss_dssp HHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455677777888854 2577888899999998665544443
No 57
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=50.76 E-value=25 Score=18.19 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAI 45 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~ 45 (77)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++...
T Consensus 17 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y 54 (76)
T 1hry_A 17 RDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPF 54 (76)
T ss_dssp HHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHHHHH
Confidence 345666777799864 35778889999999986654443
No 58
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=50.52 E-value=9.1 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHHHHhCCCC
Q 048050 1 MPVMALGAGGSLYEVYHPDF 20 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~ 20 (77)
+++||+..|++|.+.+|--+
T Consensus 69 s~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 69 TPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888876543
No 59
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.30 E-value=27 Score=19.45 Aligned_cols=39 Identities=5% Similarity=0.032 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 31 ~~r~~i~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~ 69 (102)
T 2co9_A 31 DTQAAIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQVYKK 69 (102)
T ss_dssp HHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Confidence 45666667788864 3577788899999998765544444
No 60
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=49.75 E-value=26 Score=18.19 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
+.+|...+.-||+.. ..+....|.+.|..|++.++....
T Consensus 15 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~ 53 (79)
T 3u2b_C 15 QIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSDKIPFI 53 (79)
T ss_dssp HHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345666677788754 357788889999999866544433
No 61
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=48.37 E-value=31 Score=21.88 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+..|...+.-||+.. ..+..+.|.+.|..|++.++....|
T Consensus 22 ~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~ 61 (214)
T 3tq6_A 22 KEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQD 61 (214)
T ss_dssp HHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHH
Confidence 345666777799865 4677888899999999775554444
No 62
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=48.20 E-value=30 Score=22.34 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
..|...+.-||+.. ..+..+.|.+.|..|++.++....|
T Consensus 55 e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~ 93 (238)
T 3tmm_A 55 EQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQD 93 (238)
T ss_dssp HHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44666677789865 4677888899999999776555444
No 63
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=47.67 E-value=28 Score=17.93 Aligned_cols=37 Identities=5% Similarity=0.103 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+.+|...+.-||+.. ..+..+.|.+.|..|++ +..|.
T Consensus 16 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 16 NSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHHH
Confidence 345666777889864 36778889999999987 55554
No 64
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=47.34 E-value=31 Score=18.35 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHH
Q 048050 7 GAGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAI 45 (77)
Q Consensus 7 kayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~ 45 (77)
+.+|...+.-||+.. ..+....|.+.|..|++.++...
T Consensus 17 ~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y 54 (85)
T 1j46_A 17 RDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPF 54 (85)
T ss_dssp HHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHHHH
Confidence 345666677788864 35778888999999986654433
No 65
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=47.26 E-value=41 Score=20.73 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCC-CCCChHHHHHHHHHHH
Q 048050 7 GAGGSLYEVYHPD-FSGNSRDFIEIHNSYE 35 (77)
Q Consensus 7 kayr~l~~~~HPD-~~~~~~~f~~i~~Ay~ 35 (77)
-++-+..+..||+ ++|..+.+.+..+.+.
T Consensus 116 v~lArv~K~l~pe~rnp~~eh~E~a~~v~d 145 (148)
T 1wwi_A 116 VAYARVLKELDPALKNPQTEHHERAERVFN 145 (148)
T ss_dssp HHHHHHHHHHSTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccCCCCHHHHHHHHHHHH
Confidence 3556777889999 8888777766655544
No 66
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=46.52 E-value=30 Score=17.90 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHH
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
..|...+.-||+.. ..+....|.+.|..|++.++....
T Consensus 20 ~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~ 57 (77)
T 1hme_A 20 EYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYE 57 (77)
T ss_dssp HHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHHHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45566667788853 367788899999999976554443
No 67
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=41.93 E-value=44 Score=18.47 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHhh
Q 048050 8 AGGSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 8 ayr~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 24 ~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~ 63 (99)
T 1k99_A 24 EKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYIQD 63 (99)
T ss_dssp HHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHHHH
T ss_pred HHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44666667788854 46788899999999998766555443
No 68
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=39.89 E-value=52 Score=18.95 Aligned_cols=32 Identities=6% Similarity=-0.093 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHH
Q 048050 3 VMALGAGGSLYEVYHPDFSG-NSRDFIEIHNSY 34 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~~~-~~~~f~~i~~Ay 34 (77)
++++..||.+.+.|-.+-.. +...=+.||.|+
T Consensus 12 ~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~aF 44 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFTTDKALKEKIDKFINAVF 44 (102)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 57899999999998655433 322222345544
No 69
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=35.90 E-value=68 Score=18.92 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHHHHh
Q 048050 10 GSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARAIYD 47 (77)
Q Consensus 10 r~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~~yD 47 (77)
+...+.-||+.+ ..+....|.+.|..|++.++....+
T Consensus 20 ~~ki~~~~P~~~-~~eisk~lg~~Wk~ls~~eK~~y~~ 56 (159)
T 2gzk_A 20 RRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQ 56 (159)
T ss_dssp HHHHHHHCSSCC-HHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCCC-HHHHHHHHHHHHHHhhHHHhccHHH
Confidence 444456799943 3677888899999998776554444
No 70
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=35.66 E-value=22 Score=19.28 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=15.5
Q ss_pred HHHHHHhcCChhhHHHHhhh
Q 048050 30 IHNSYETLSDPTARAIYDIS 49 (77)
Q Consensus 30 i~~Ay~vL~d~~~R~~yD~~ 49 (77)
|++|-+.|.-.++|+.||-.
T Consensus 33 l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 33 LKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp HHHHHHHTTTCCTHHHHHHH
T ss_pred HHHHHHHhCCccceehhhHH
Confidence 67777888754799999965
No 71
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=34.87 E-value=58 Score=17.81 Aligned_cols=51 Identities=8% Similarity=0.041 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCC-hHHHHHHH--HHHHhcCChhhHHHHhhhcc
Q 048050 1 MPVMALGAGGSLYEVYHPDFSGN-SRDFIEIH--NSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~HPD~~~~-~~~f~~i~--~Ay~vL~d~~~R~~yD~~~~ 51 (77)
+.++-+.+|+.|...++-+-.-. +.....|. .-|.+|.....+..|+.+..
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y~~ 68 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVK 68 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCCHHHHHHHHHHHHH
Confidence 45788899999999886554443 44444443 35777764456667777653
No 72
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=33.26 E-value=59 Score=17.46 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCC---h---HHHHHHHHHHHhcCCh-hhHHHHhhhccc
Q 048050 3 VMALGAGGSLYEVYHPDFSGN---S---RDFIEIHNSYETLSDP-TARAIYDISLEE 52 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~~~~---~---~~f~~i~~Ay~vL~d~-~~R~~yD~~~~~ 52 (77)
..++.+|+.+.+...|..... . ..|.. ..+|..+.++ ..+.+|+.+...
T Consensus 9 rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~-~~~fkav~~E~eR~~lFeeYi~~ 64 (77)
T 2cqn_A 9 KRKESAFKSMLKQAAPPIELDAVWEDIRERFVK-EPAFEDITLESERKRIFKDFMHV 64 (77)
T ss_dssp HHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTT-SHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHcc-CHHHHhcCCHHHHHHHHHHHHHH
Confidence 457788999998888877765 2 22322 3489999775 566778887654
No 73
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=32.35 E-value=65 Score=18.81 Aligned_cols=20 Identities=5% Similarity=-0.212 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHhCCCCCC
Q 048050 3 VMALGAGGSLYEVYHPDFSG 22 (77)
Q Consensus 3 ~eIkkayr~l~~~~HPD~~~ 22 (77)
++++..||.+.+.|-.+-..
T Consensus 19 ~~L~~~YR~ill~YF~~d~~ 38 (111)
T 1v2z_A 19 DELRSIYRTIVLEYFNTDAK 38 (111)
T ss_dssp HHHHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHHHHHhCCchH
Confidence 57899999999998655443
No 74
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=30.13 E-value=35 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHhCCC
Q 048050 2 PVMALGAGGSLYEVYHPD 19 (77)
Q Consensus 2 ~~eIkkayr~l~~~~HPD 19 (77)
.+|++++=..+..++|||
T Consensus 46 s~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 46 SQELLAQAQSILNKNHPG 63 (138)
T ss_dssp HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 578888888888888888
No 75
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=27.59 E-value=61 Score=19.01 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=4.2
Q ss_pred hhhHHHHhh
Q 048050 40 PTARAIYDI 48 (77)
Q Consensus 40 ~~~R~~yD~ 48 (77)
+..+..|+.
T Consensus 194 ~~~~~~~~~ 202 (212)
T 3rh2_A 194 PDSLANFDR 202 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444544443
No 76
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=26.07 E-value=1e+02 Score=17.86 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 24 SRDFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 24 ~~~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
.+.|..|.+-| +.||.-+..||..+.
T Consensus 99 ~e~~~~L~~mY--v~D~rF~~~~d~~~~ 124 (143)
T 1ny9_A 99 YEMHTCLGEMY--VSDERFTRNIDAAKP 124 (143)
T ss_dssp HHHHHHHHHHT--TSTHHHHHHHGGGST
T ss_pred HHHHHHHHHHH--hcCHHHHHhHcccCh
Confidence 46777777776 478888899998643
No 77
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.40 E-value=73 Score=18.27 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhc--CChhhHHHH
Q 048050 25 RDFIEIHNSYETL--SDPTARAIY 46 (77)
Q Consensus 25 ~~f~~i~~Ay~vL--~d~~~R~~y 46 (77)
+..+.|++||++. ++...-+.|
T Consensus 11 ey~eKl~KAYElYvfs~~~~F~~Y 34 (106)
T 2vkj_A 11 TRMEKTLKAYELYIFSDYENFENY 34 (106)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHH
Confidence 5678899999964 566555555
No 78
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=25.27 E-value=52 Score=19.18 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=27.9
Q ss_pred ChhHHHHHHHHHH----HHhCCCCCCChHHHHHHHHHHHhcC-Chhh
Q 048050 1 MPVMALGAGGSLY----EVYHPDFSGNSRDFIEIHNSYETLS-DPTA 42 (77)
Q Consensus 1 ~~~eIkkayr~l~----~~~HPD~~~~~~~f~~i~~Ay~vL~-d~~~ 42 (77)
|..||+.-|+..- ++.+|+-.-+.+.|+.|-..|---. +|..
T Consensus 23 s~~elk~~y~~F~~g~~~k~cp~G~i~~e~F~~i~~~ffp~~~~p~~ 69 (118)
T 1tuz_A 23 STKKVSDVLKLFEDGEMAKYVQGDAIGYEGFQQFLKIYLEVDNVPRH 69 (118)
T ss_dssp CCCCHHHHHHHHHTSGGGGGEETTEECHHHHHHHHHHHTTCSSCCHH
T ss_pred CHHHHHHHHHHHccccccccCCCCCCCHHHHHHHHHHhCcCCCCHHH
Confidence 3457888888774 5667765445788988888775444 5543
No 79
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=24.73 E-value=63 Score=16.14 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhcCChhhHHHH
Q 048050 24 SRDFIEIHNSYETLSDPTARAIY 46 (77)
Q Consensus 24 ~~~f~~i~~Ay~vL~d~~~R~~y 46 (77)
.+..+.|.+.|..|++.++....
T Consensus 27 ~ei~k~lg~~Wk~ls~~eK~~y~ 49 (67)
T 3fgh_A 27 QEKLKTVKENWKNLSDSEKELYI 49 (67)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHH
Confidence 47788899999999866544433
No 80
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=23.35 E-value=41 Score=23.02 Aligned_cols=10 Identities=0% Similarity=-0.154 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 048050 4 MALGAGGSLY 13 (77)
Q Consensus 4 eIkkayr~l~ 13 (77)
+|+..+..+.
T Consensus 233 ~l~~i~~~il 242 (358)
T 2pk2_A 233 LLDELTHEFL 242 (358)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 81
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=23.28 E-value=16 Score=20.17 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCCCC-ChHHHHHHHHHHHhcCChhhHH
Q 048050 9 GGSLYEVYHPDFSG-NSRDFIEIHNSYETLSDPTARA 44 (77)
Q Consensus 9 yr~l~~~~HPD~~~-~~~~f~~i~~Ay~vL~d~~~R~ 44 (77)
+|...+.-||+... ..+....|.+.|..|++.++..
T Consensus 37 ~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~ 73 (97)
T 2lhj_A 37 KRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKP 73 (97)
T ss_dssp GGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSS
T ss_pred HHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555667888753 3577888899999998775443
No 82
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=23.04 E-value=72 Score=18.88 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHhhhcc
Q 048050 26 DFIEIHNSYETLSDPTARAIYDISLE 51 (77)
Q Consensus 26 ~f~~i~~Ay~vL~d~~~R~~yD~~~~ 51 (77)
.....++.|.||+ |+.|..++....
T Consensus 96 ~~~~~~~~~~vLT-PEQr~q~~~~~~ 120 (138)
T 3oeo_A 96 HMETQNKIYNILT-PEQKKQFNANFE 120 (138)
T ss_dssp HHHHHHHHHTTSC-HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 3555678899997 777777776543
No 83
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=22.62 E-value=64 Score=19.19 Aligned_cols=16 Identities=6% Similarity=-0.365 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHHHh
Q 048050 1 MPVMALGAGGSLYEVY 16 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~ 16 (77)
|.+|++..+++|+.+.
T Consensus 18 ~d~el~~rar~LA~kI 33 (121)
T 3kp1_E 18 SDEELQTRFWEMAEKI 33 (121)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5689999999999864
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=21.96 E-value=70 Score=18.01 Aligned_cols=16 Identities=0% Similarity=-0.421 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHHHh
Q 048050 1 MPVMALGAGGSLYEVY 16 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~ 16 (77)
|-++||..|..++++.
T Consensus 68 t~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 68 SVEDLKERYYHICAKL 83 (93)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4578999999888764
No 85
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=21.67 E-value=84 Score=18.49 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC
Q 048050 4 MALGAGGSLYEVYHPDFSGN 23 (77)
Q Consensus 4 eIkkayr~l~~~~HPD~~~~ 23 (77)
+|..+.+.+++..|-|-.++
T Consensus 2 ~L~~~~k~l~~~QhHDaItG 21 (159)
T 1o7d_C 2 DSAPLNEAMAVLQHHDAVSG 21 (159)
T ss_dssp CSHHHHHHHHHTTBTTTTTC
T ss_pred hHHHHHHHHhCcccCCcCCc
Confidence 46788999999999999875
No 86
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=21.06 E-value=39 Score=18.32 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHhh
Q 048050 25 RDFIEIHNSYETLSDPTARAIYDI 48 (77)
Q Consensus 25 ~~f~~i~~Ay~vL~d~~~R~~yD~ 48 (77)
..+..+.+.+++|+||........
T Consensus 12 ~~~~~~~~~~~aL~~~~Rl~IL~~ 35 (99)
T 2zkz_A 12 MSLEDDAELLKTMAHPMRLKIVNE 35 (99)
T ss_dssp CCHHHHHHHHHHHCSHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHH
Confidence 456677888899999988877743
No 87
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=20.77 E-value=1.1e+02 Score=16.94 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHhcCChhhHH
Q 048050 10 GSLYEVYHPDFSGNSRDFIEIHNSYETLSDPTARA 44 (77)
Q Consensus 10 r~l~~~~HPD~~~~~~~f~~i~~Ay~vL~d~~~R~ 44 (77)
|...+.-||+. ...+..|.+.|..|++.++.-
T Consensus 38 R~kik~enP~~---s~~~~eIse~Wk~ls~eeK~p 69 (90)
T 2yuk_A 38 FPNLKEEFPDW---TTRVKQIAKLWRKASSQERAP 69 (90)
T ss_dssp CTTHHHHCCSH---HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHCcCc---cchHHHHHHHHHcCCHHHHHH
Confidence 33444445542 234788889999999765544
No 88
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=20.76 E-value=77 Score=17.91 Aligned_cols=17 Identities=0% Similarity=-0.412 Sum_probs=13.1
Q ss_pred ChhHHHHHHHHHHHHhC
Q 048050 1 MPVMALGAGGSLYEVYH 17 (77)
Q Consensus 1 ~~~eIkkayr~l~~~~H 17 (77)
|-++||..|.++++++-
T Consensus 68 tvEdLK~RYY~V~~~l~ 84 (93)
T 4iej_A 68 SVEDLKERYYHICAKLA 84 (93)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45889999998887653
Done!