BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048051
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/249 (38%), Positives = 144/249 (57%), Gaps = 5/249 (2%)
Query: 50 FKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFE 109
F P +N+ D T+ ++L+E RK + + T + ID++QRLG+ YHF
Sbjct: 36 FLNCPDKNI-----DAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFT 90
Query: 110 DEIMERLERFSDGDAAGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKD 169
EI + LE + E +L+ ++RFRLLR +G D+F KF +++G K SV+ D
Sbjct: 91 KEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSD 150
Query: 170 TRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMS 229
RG+L LY+ASYL +DIL EA+ FT L+ +V+ +D S V AL +
Sbjct: 151 VRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLP 210
Query: 230 RSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGR 289
R EA +Y++ Y +H++ LL+ AK DFNM+Q LH++EL+EI RWWK L KL + R
Sbjct: 211 RVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYAR 270
Query: 290 DRPLECFLW 298
DR +E + W
Sbjct: 271 DRVVEGYFW 279
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 137/229 (59%), Gaps = 2/229 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LIDTI+RLGI YHFE EI + L++ + ++ +L
Sbjct: 49 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN-DLC 107
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 108 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 167
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 168 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 227
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+ WT
Sbjct: 228 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWT 276
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 136/229 (59%), Gaps = 2/229 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LIDTI+RLGI YHFE EI + L++ + ++ +L
Sbjct: 49 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN-DLC 107
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 108 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 167
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 168 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 227
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+ W
Sbjct: 228 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 276
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 136/229 (59%), Gaps = 2/229 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LIDTI+RLGI YHFE EI + L++ + ++ +L
Sbjct: 47 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN-DLC 105
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 106 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 165
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 166 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 225
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+ W
Sbjct: 226 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 136/229 (59%), Gaps = 2/229 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LIDTI+RLGI YHFE EI + L++ + ++ + L
Sbjct: 34 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND-LC 92
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 93 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 152
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 153 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 212
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+ W
Sbjct: 213 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 261
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 136/229 (59%), Gaps = 2/229 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LIDTI+RLGI YHFE EI + L++ + ++ +L
Sbjct: 47 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN-DLC 105
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 106 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 165
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 166 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 225
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+ W
Sbjct: 226 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 167 bits (423), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 135/229 (58%), Gaps = 2/229 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LID I+RLGI YHFE EI E L++ + ++ +L
Sbjct: 47 EALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCN-DLC 105
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 106 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 165
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 166 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 225
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+ W
Sbjct: 226 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 167 bits (423), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 135/229 (58%), Gaps = 2/229 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LID I+RLGI YHFE EI E L++ + ++ +L
Sbjct: 47 EALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCN-DLC 105
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 106 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 165
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 166 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 225
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+ W
Sbjct: 226 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWA 274
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 135/227 (59%), Gaps = 2/227 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LIDTI+RLGI YHFE EI + L++ + ++ +L
Sbjct: 47 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN-DLC 105
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 106 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 165
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 166 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 225
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFL 297
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+
Sbjct: 226 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYF 272
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 163 bits (413), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 135/227 (59%), Gaps = 2/227 (0%)
Query: 72 EELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEENLF 131
E L+E+TR L + T+ LIDTI+RLGI YHFE EI + L++ + ++ +L
Sbjct: 47 EALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCN-DLC 105
Query: 132 ENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191
+AL+FRLLR +G +IF KF ++ GK KES++ D G+L+LYEAS++ T DIL
Sbjct: 106 TSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILE 165
Query: 192 EAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINE-YSQSWNHDQTL 250
+A+ F+ L + + S V AL H + R E +I+ Y + + + L
Sbjct: 166 DALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVL 225
Query: 251 LQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFL 297
L+ AK DFN++Q LH++ELA++ RWWK L V L + RDR +EC+
Sbjct: 226 LRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYF 272
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 137/236 (58%), Gaps = 4/236 (1%)
Query: 68 KSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERF-SDG--DA 124
K ++L+ R+ + + ++LID +QRLG+GY FE +I L+RF S G D
Sbjct: 43 KDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDG 102
Query: 125 AGEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLAT 184
+ +L AL FRLLR +G + F F ++ G E++ +DT+ +LSLYEAS+LA
Sbjct: 103 VTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLAL 162
Query: 185 QDKDILFEAMEFTKTELTQ-SVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQS 243
+ ++IL EA F + L + S + + + V AL LP H R R EA I Y +
Sbjct: 163 EGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK 222
Query: 244 WNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
+ +Q LL+LA D+NM+QS++QR+L E RWW+++GL KL F RDR +E F W
Sbjct: 223 EDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWA 278
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 131/224 (58%), Gaps = 5/224 (2%)
Query: 80 KALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLE-RFSDGDAAGEENLFENALRFR 138
K + + D ++LID ++RLGI HFE EI+E L ++ + E +L+ ALRFR
Sbjct: 74 KMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFR 133
Query: 139 LLRHNGLPACTDIFKKFINKEG-KLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFT 197
LLR ++F F N +G K S+ DTRG+L LYEAS+L+ Q ++ L A +F
Sbjct: 134 LLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFA 193
Query: 198 KTELTQSVSLMDSQSS--RHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAK 255
T+ Q L+D + + +AL LP H R+ A ++I+ Y + + + T+L+LAK
Sbjct: 194 -TKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAK 252
Query: 256 SDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
DFNMVQ+ Q+EL E RWW GLV +L F RDR +EC+ WT
Sbjct: 253 LDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWT 296
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 10/236 (4%)
Query: 73 ELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERL-------ERFSDGDAA 125
EL + L K + D ++LID +QR+G+ HF++E E L + +
Sbjct: 35 ELVTLVKMELEKET-DQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK 93
Query: 126 GEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQ 185
E +L+ +L FRLLR +G ++F F N+EG+ KES+S DTRG+L LYEAS+L T+
Sbjct: 94 EERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTE 153
Query: 186 DKDILFEAMEFTKTELTQSVSL--MDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQS 243
+ L A EF L + V+ +D + +L +P H R+ R A +I Y +
Sbjct: 154 GETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR 213
Query: 244 WNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
+ + +L+LA D N+VQ+ Q EL E RWW+ G V+KL F RDR +EC+ W
Sbjct: 214 PDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWN 269
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 11/231 (4%)
Query: 80 KALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAGEEN------LFEN 133
+ L K +P ++LI ++ LG+ F+DEI E L + N L+
Sbjct: 45 RILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFT 104
Query: 134 ALRFRLLRHNGLPACTDIFKKFINKEG-KLKESVSKDTRGMLSLYEASYLATQDKDILFE 192
AL FRLLR +G D+F F N++G K S+++DT+GML LYEAS+L + +D L
Sbjct: 105 ALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLEL 164
Query: 193 AMEFT----KTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQ 248
A EF + +L + + +D + +L LP H R+ EA +I+ Y++ + +
Sbjct: 165 AREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNP 224
Query: 249 TLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299
+ +LAK +FN++Q+ HQ+EL ++ RWW +L +KL F RDR +E F W
Sbjct: 225 LIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA 275
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 28/232 (12%)
Query: 93 MKLIDTIQRLGIGYHFEDEIMERLERF-----SDGDAAGEENLFEN----ALRFRLLRHN 143
+ L+D I+ LGIG HF+ EI L+ G G ++L + AL R LR +
Sbjct: 250 LSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMH 309
Query: 144 GLPACTDIFKKFINKEGKLKESVSK---DTRGMLSLYEASYLATQDKDILFEAMEFTKTE 200
G +D+ F ++ G+ S + + R +++L+ AS LA D+ + +A +F +
Sbjct: 310 GYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPY 369
Query: 201 LTQSVSLMDSQSSR---HVVQALALPRHLRMSRSEAGNYINEYSQS--WNH--------- 246
L ++++ S +++ + + P H+ + R EA +YI+ Y + W
Sbjct: 370 LREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRMPSL 429
Query: 247 -DQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFL 297
+ L+LAK DFN+VQSLHQ EL + RWWK+ G+ D + F R R E +
Sbjct: 430 SNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYF 480
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 111/239 (46%), Gaps = 41/239 (17%)
Query: 95 LIDTIQRLGIGYHFEDEIMERLERF-----SDGDAAGEEN----LFENALRFRLLR---H 142
++D I RLGI HFE EI E L+ G G N L AL FRLLR +
Sbjct: 304 IVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRY 363
Query: 143 NGLPACTDIFK----KFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTK 198
N PA D FK KFI G+ +KD ML+LY AS LA ++IL EA F
Sbjct: 364 NVSPAIFDNFKDANGKFICSTGQF----NKDVASMLNLYRASQLAFPGENILDEAKSFAT 419
Query: 199 TELTQSVSLMDSQS--------SRHVVQALALPRHLRMSRSEAGNYINEYSQSWN----- 245
L +++ ++ S S+ + AL H + R EA Y Y +
Sbjct: 420 KYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKC 479
Query: 246 -------HDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFL 297
+++ L+L K DFN++QS+HQ E+ + W++ GL F R+RPLE +
Sbjct: 480 VYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEFYF 537
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 33/234 (14%)
Query: 96 IDTIQRLGIGYHFEDEIMERLER-FSDGDAAG----EEN----LFENALRFRLLRHNGLP 146
+DT++RLGI HF++EI E L+ +S D G EN + + A+ R+LR +G
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYN 336
Query: 147 ACTDIFKKFINKEGKLKESVSKDTRG---MLSLYEASYLATQDKDILFEAMEFTKTELTQ 203
+D+ K F ++ G+ + + RG ML++ S+++ + I+ EA T+ L
Sbjct: 337 VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRN 396
Query: 204 SVSLMDS-------QSSRHVVQ-ALALPRHLRMSRSEAGNYINEYS------------QS 243
++ +D+ ++ R V+ AL P H M R EA +YI Y
Sbjct: 397 ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMP 456
Query: 244 WNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFL 297
+ ++ L+LAK DFN VQS+HQ EL +++RWWK G D L F R+R E +
Sbjct: 457 YISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTD-LNFTRERVTEIYF 509
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 37/236 (15%)
Query: 95 LIDTIQRLGIGYHFEDEIMERLER----FSDGD-----AAGEENLFENALRFRLLRHNGL 145
++D +QRLGI +FE+EI E L+ ++D + +++ + A+ FRLLR +G
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 146 PACTDIFKKFINKEGKLKESVSKDTR---GMLSLYEASYLATQDKDILFEAMEFT----- 197
D+FK F KEG+ V + + GM +LY AS LA ++IL A EF+
Sbjct: 311 QVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLL 369
Query: 198 ----KTELTQSVSLMDSQSSRHVVQALALPRHLRMSRSEAGNYINEYS------------ 241
+ EL +M + AL +P + + R E YI++Y
Sbjct: 370 EKREREELIDKWIIMKDLPGE-IGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLY 428
Query: 242 -QSWNHDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECF 296
+ ++ L+LAK D+N Q+ HQ E ++W+++ + + G R LEC+
Sbjct: 429 RMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-NRLSEWGVRRSELLECY 483
>pdb|2G0U|A Chain A, Solution Structure Of Monomeric Bsal, The Type Iii
Secretion Needle Protein Of Burkholderia Pseudomallei
Length = 92
Score = 30.8 bits (68), Expect = 0.92, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 39 LSSLPKPLVTDFKTSPRQNVLTYEGDRGTKSLEEELQERTRKALRKSSNDPTA 91
+S+ P PL+ D++ S + D G K L ++LQ+ + L K+ +DPTA
Sbjct: 1 MSNPPTPLLADYEWSGYLTGIGRAFDDGVKDLNKQLQD-AQANLTKNPSDPTA 52
>pdb|3OHN|A Chain A, Crystal Structure Of The Fimd Translocation Domain
pdb|3OHN|B Chain B, Crystal Structure Of The Fimd Translocation Domain
Length = 558
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 146 PACTDIFKKFINKEGKLKESVSKDTRGMLSLY----EASYLATQDKDILFEA---MEFTK 198
P TD + NK GKL+ +V++ +LY +Y T + D F+A F
Sbjct: 345 PKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFED 404
Query: 199 TELTQSVSLMDSQSSRHVVQALALPRHLRMSR 230
T S SL + + Q LAL ++ S
Sbjct: 405 INWTLSYSLTKNAWQKGRDQMLALNVNIPFSH 436
>pdb|3RFZ|B Chain B, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
pdb|3RFZ|E Chain E, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
Length = 843
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 146 PACTDIFKKFINKEGKLKESVSKDTRGMLSLY----EASYLATQDKDILFEA---MEFTK 198
P TD + NK GKL+ +V++ +LY +Y T + D F+A F
Sbjct: 468 PKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFED 527
Query: 199 TELTQSVSLMDSQSSRHVVQALALPRHLRMS 229
T S SL + + Q LAL ++ S
Sbjct: 528 INWTLSYSLTKNAWQKGRDQMLALNVNIPFS 558
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,281,693
Number of Sequences: 62578
Number of extensions: 308650
Number of successful extensions: 1264
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 24
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)