Query 048051
Match_columns 299
No_of_seqs 138 out of 743
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 1.7E-87 3.6E-92 676.8 21.2 253 46-299 1-270 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 2.4E-72 5.3E-77 585.1 15.4 211 86-299 267-503 (784)
3 PLN02592 ent-copalyl diphospha 100.0 3.3E-71 7.1E-76 576.0 16.0 225 73-299 290-551 (800)
4 PF01397 Terpene_synth: Terpen 100.0 3E-56 6.4E-61 395.8 16.3 157 63-220 21-183 (183)
5 PF14164 YqzH: YqzH-like prote 30.3 27 0.00058 26.6 1.1 19 137-155 11-29 (64)
6 PF11848 DUF3368: Domain of un 30.2 25 0.00055 24.6 0.9 21 136-156 24-44 (48)
7 KOG3951 Uncharacterized conser 24.8 1.2E+02 0.0025 29.4 4.5 57 157-221 264-320 (321)
8 COG4738 Predicted transcriptio 23.9 1.5E+02 0.0033 25.2 4.6 79 93-178 14-102 (124)
9 KOG3557 Epidermal growth facto 23.2 47 0.001 35.6 1.7 96 114-229 271-370 (721)
10 PF11000 DUF2840: Protein of u 22.9 49 0.0011 29.1 1.5 14 93-106 98-111 (149)
11 PF09278 MerR-DNA-bind: MerR, 21.0 92 0.002 22.2 2.5 23 91-116 2-24 (65)
12 COG1725 Predicted transcriptio 20.7 1.3E+02 0.0028 25.7 3.6 69 128-196 47-119 (125)
13 PF08373 RAP: RAP domain; Int 20.5 73 0.0016 22.3 1.8 27 130-156 17-43 (58)
14 PF12626 PolyA_pol_arg_C: Poly 20.1 1.5E+02 0.0033 25.0 3.9 28 254-281 65-92 (124)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.7e-87 Score=676.77 Aligned_cols=253 Identities=44% Similarity=0.701 Sum_probs=237.2
Q ss_pred CC-CCCCCCCc----ccc--CCCCch-hhHHHHHHHHHHHHHHHhhhC--CCCccchhhHHHHHHHhCCccccHHHHHHH
Q 048051 46 LV-TDFKTSPR----QNV--LTYEGD-RGTKSLEEELQERTRKALRKS--SNDPTATMKLIDTIQRLGIGYHFEDEIMER 115 (299)
Q Consensus 46 r~-a~~~ps~W----fl~--~~~~~~-~~~~~~~~~Lk~eVr~~l~~~--~~d~~~~L~lID~LqRLGI~yhFe~EI~~~ 115 (299)
|+ ++|+||+| |++ +++.+. .+.++++ +||++||+||... +.|++++|+|||+||||||+|||++||+++
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~-~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~ 79 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIE-ELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI 79 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHH-HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence 45 99999999 444 344443 6888999 9999999999864 579999999999999999999999999999
Q ss_pred HHHhHcCCCC----CCCchhhHHHHHHHHhhcCccccccccccccccccccccccccchHHHHhHhhhhccCCCCchHHH
Q 048051 116 LERFSDGDAA----GEENLFENALRFRLLRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILF 191 (299)
Q Consensus 116 L~~iy~~~~~----~~~DL~~~AL~FRLLRqhGY~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLd 191 (299)
|++||+.+.. ...||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||+|||||||+++||+|||
T Consensus 80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd 159 (542)
T cd00684 80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD 159 (542)
T ss_pred HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence 9999987532 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC---CCCccHHHHHHhccCCccCCcchhhhhhhhhhcccCCcccHHHHHHHHhhhHHHHHHHHHH
Q 048051 192 EAMEFTKTELTQSVSL---MDSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNHDQTLLQLAKSDFNMVQSLHQRE 268 (299)
Q Consensus 192 eA~~Fs~~~L~~~~~~---~~~~L~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~lLeLAKlDFn~~Qs~hq~E 268 (299)
||+.||++||++.++. ++++|+++|++||++|+|+++||+|||+||++|++++++|++||||||+|||+||++||+|
T Consensus 160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E 239 (542)
T cd00684 160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE 239 (542)
T ss_pred HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence 9999999999999886 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcccccceeeeccC
Q 048051 269 LAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299 (299)
Q Consensus 269 L~~lsrWWk~l~l~~~L~FaRdR~ve~Yfw~ 299 (299)
|++++|||+++||.++|||||||++|||||+
T Consensus 240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~ 270 (542)
T cd00684 240 LKILSRWWKDLDLASKLPFARDRLVECYFWA 270 (542)
T ss_pred HHHHhHHHHhcCCcccCCcccchhHHHHHHH
Confidence 9999999999999988999999999999995
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=2.4e-72 Score=585.14 Aligned_cols=211 Identities=32% Similarity=0.465 Sum_probs=198.4
Q ss_pred CCCccchhhHHHHHHHhCCccccHHHHHHHHHHhHcCCCC----CCCchhhHHHHHHHHhhcCccccccccccccccccc
Q 048051 86 SNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAA----GEENLFENALRFRLLRHNGLPACTDIFKKFINKEGK 161 (299)
Q Consensus 86 ~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~----~~~DL~~~AL~FRLLRqhGY~VS~DvF~~F~d~~G~ 161 (299)
+.++++++++||+||||||+|||++||+++|+++|+.+.. ...|+++|||+|||||||||+||||||++|+|++
T Consensus 267 p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~-- 344 (784)
T PLN02279 267 PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH-- 344 (784)
T ss_pred cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc--
Confidence 5789999999999999999999999999999999986421 2379999999999999999999999999999754
Q ss_pred ccccc---ccchHHHHhHhhhhccCCCCchHHHHHHHHHHHHHHhhhcC-------CCCccHHHHHHhccCCccCCcchh
Q 048051 162 LKESV---SKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSL-------MDSQSSRHVVQALALPRHLRMSRS 231 (299)
Q Consensus 162 F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~-------~~~~L~~~V~~aL~~P~h~~l~Rl 231 (299)
|++++ .+||+|||+||||||+++|||+|||||+.||++||++.+.. ++++|+++|+|||++|||++|||+
T Consensus 345 F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~Rl 424 (784)
T PLN02279 345 FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERL 424 (784)
T ss_pred ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHH
Confidence 99988 59999999999999999999999999999999999998763 577899999999999999999999
Q ss_pred hhhhhhhhcccCCc------------ccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccceeeeccC
Q 048051 232 EAGNYINEYSQSWN------------HDQTLLQLAKSDFNMVQSLHQRELAEIKRWWKQLGLVDKLGFGRDRPLECFLWT 299 (299)
Q Consensus 232 eaR~yI~~Y~~~~~------------~n~~lLeLAKlDFn~~Qs~hq~EL~~lsrWWk~l~l~~~L~FaRdR~ve~Yfw~ 299 (299)
|||+||++|++++. +|+.||||||+|||+||++||+||++|+|||+++|| .+|||||||+||||||+
T Consensus 425 EaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~a 503 (784)
T PLN02279 425 ANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSA 503 (784)
T ss_pred HHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHH
Confidence 99999999998875 799999999999999999999999999999999999 69999999999999996
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=3.3e-71 Score=575.99 Aligned_cols=225 Identities=28% Similarity=0.399 Sum_probs=203.1
Q ss_pred HHHHHHHHHhhh----CCCCccchhhHHHHHHHhCCccccHHHHHHHHHHhHcCC---C------CCCCchhhHHHHHHH
Q 048051 73 ELQERTRKALRK----SSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGD---A------AGEENLFENALRFRL 139 (299)
Q Consensus 73 ~Lk~eVr~~l~~----~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~---~------~~~~DL~~~AL~FRL 139 (299)
.|..-|++.=.. ++.+++++|+|||+||||||+|||++||+++|+++|+.+ + ....|+++|||+|||
T Consensus 290 YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRL 369 (800)
T PLN02592 290 YLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRL 369 (800)
T ss_pred HHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHH
Confidence 665555443222 357999999999999999999999999999999999842 1 013799999999999
Q ss_pred HhhcCcccccccccccccccccccccc---ccchHHHHhHhhhhccCCCCchHHHHHHHHHHHHHHhhhc--C------C
Q 048051 140 LRHNGLPACTDIFKKFINKEGKLKESV---SKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVS--L------M 208 (299)
Q Consensus 140 LRqhGY~VS~DvF~~F~d~~G~F~~~l---~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~--~------~ 208 (299)
||||||+||||||++|++ +|+|++.+ .+|++|||+|||||||++|||+|||+|+.||+++|++.+. . +
T Consensus 370 LRqhGy~VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~ 448 (800)
T PLN02592 370 LRLHGHQVSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWII 448 (800)
T ss_pred HHHcCCCCChHHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999997 89998765 7999999999999999999999999999999999999753 1 4
Q ss_pred CCccHHHHHHhccCCccCCcchhhhhhhhhhcccCCcc-------------cHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 048051 209 DSQSSRHVVQALALPRHLRMSRSEAGNYINEYSQSWNH-------------DQTLLQLAKSDFNMVQSLHQRELAEIKRW 275 (299)
Q Consensus 209 ~~~L~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~-------------n~~lLeLAKlDFn~~Qs~hq~EL~~lsrW 275 (299)
+++|+++|+|||++|||++|||+|||+||++|++++++ |+.||||||+|||+||++||+||++|+||
T Consensus 449 ~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrW 528 (800)
T PLN02592 449 MKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKW 528 (800)
T ss_pred CccHHHHHHHhccChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHH
Confidence 67899999999999999999999999999999987764 99999999999999999999999999999
Q ss_pred HHHhCCCCCCCcccccceeeeccC
Q 048051 276 WKQLGLVDKLGFGRDRPLECFLWT 299 (299)
Q Consensus 276 Wk~l~l~~~L~FaRdR~ve~Yfw~ 299 (299)
||++|| .+|||||||+||||||+
T Consensus 529 wke~~L-~~L~faRdr~ve~Yfwa 551 (800)
T PLN02592 529 YEECNL-GEFGVSRSELLLAYFLA 551 (800)
T ss_pred HHhcCC-CcCCcchhHHHHHHHHH
Confidence 999999 58999999999999995
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=3e-56 Score=395.75 Aligned_cols=157 Identities=43% Similarity=0.657 Sum_probs=138.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhhCCCCccchhhHHHHHHHhCCccccHHHHHHHHHHhHcCCCC---CCCchhhHHHHHHH
Q 048051 63 GDRGTKSLEEELQERTRKALRKSSNDPTATMKLIDTIQRLGIGYHFEDEIMERLERFSDGDAA---GEENLFENALRFRL 139 (299)
Q Consensus 63 ~~~~~~~~~~~Lk~eVr~~l~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~---~~~DL~~~AL~FRL 139 (299)
.+.+.++++ +||++||.||.....|++++|+|||+||||||+|||++||+++|++||+.+.. ...||++|||+|||
T Consensus 21 ~~~~~~~~~-~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRL 99 (183)
T PF01397_consen 21 DEKCKERAE-ELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRL 99 (183)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHH
Confidence 367889999 99999999998743489999999999999999999999999999999997543 23599999999999
Q ss_pred HhhcCccccccccccccccccccccccccchHHHHhHhhhhccCCCCchHHHHHHHHHHHHHHhhhcCCCC---ccHHHH
Q 048051 140 LRHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDS---QSSRHV 216 (299)
Q Consensus 140 LRqhGY~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~---~L~~~V 216 (299)
||||||+||||||++|+|++|+|+.++++||+|||+|||||||+++||+|||||+.||++||++++++..+ +|+++|
T Consensus 100 LRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V 179 (183)
T PF01397_consen 100 LRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSNLSIPDPHLAKEV 179 (183)
T ss_dssp HHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHH
T ss_pred HHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999875533 499999
Q ss_pred HHhc
Q 048051 217 VQAL 220 (299)
Q Consensus 217 ~~aL 220 (299)
+|||
T Consensus 180 ~~AL 183 (183)
T PF01397_consen 180 KHAL 183 (183)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9997
No 5
>PF14164 YqzH: YqzH-like protein
Probab=30.29 E-value=27 Score=26.61 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.7
Q ss_pred HHHHhhcCccccccccccc
Q 048051 137 FRLLRHNGLPACTDIFKKF 155 (299)
Q Consensus 137 FRLLRqhGY~VS~DvF~~F 155 (299)
=+-|||.||++.++.+...
T Consensus 11 ~~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 11 INCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHHhCCcccCCCCCHH
Confidence 3569999999999987764
No 6
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.16 E-value=25 Score=24.60 Aligned_cols=21 Identities=10% Similarity=0.339 Sum_probs=15.6
Q ss_pred HHHHHhhcCcccccccccccc
Q 048051 136 RFRLLRHNGLPACTDIFKKFI 156 (299)
Q Consensus 136 ~FRLLRqhGY~VS~DvF~~F~ 156 (299)
.+--|+++||.+|+++++.+.
T Consensus 24 ~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 24 LLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHHcCcccCHHHHHHHH
Confidence 344458889999998887764
No 7
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.79 E-value=1.2e+02 Score=29.43 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=40.6
Q ss_pred ccccccccccccchHHHHhHhhhhccCCCCchHHHHHHHHHHHHHHhhhcCCCCccHHHHHHhcc
Q 048051 157 NKEGKLKESVSKDTRGMLSLYEASYLATQDKDILFEAMEFTKTELTQSVSLMDSQSSRHVVQALA 221 (299)
Q Consensus 157 d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~L~~~V~~aL~ 221 (299)
+.+|-|....+-|+||...|-.+-- ....| -|=.|..||++||..- +-.+++++-|+
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~e-~LLnaLRfTTKHlNde------sTpK~ir~ll~ 320 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQSE-CLLNALRFTTKHLNDE------STPKSIRHLLE 320 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhhH-HHHHHHHHHHhhcCCC------CChHHHHHHhc
Confidence 4678898888899999999988653 22333 4667899999998642 34566666553
No 8
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=23.94 E-value=1.5e+02 Score=25.19 Aligned_cols=79 Identities=27% Similarity=0.350 Sum_probs=43.4
Q ss_pred hhHHHHHHHhCCccccHHHHHHHHHHhHcCCCCC------CCch--hhHHHHHHHHhhcCccccccccccccccccc-cc
Q 048051 93 MKLIDTIQRLGIGYHFEDEIMERLERFSDGDAAG------EENL--FENALRFRLLRHNGLPACTDIFKKFINKEGK-LK 163 (299)
Q Consensus 93 L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~~------~~DL--~~~AL~FRLLRqhGY~VS~DvF~~F~d~~G~-F~ 163 (299)
-.+|+.|+.|||++.- -.+|-.+-+..... ...| -.+|++-|.||.+|. |.----+| ..+|. .+
T Consensus 14 ~~~ie~L~~lgi~R~v----A~tlv~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~gW-V~~R~eKK--kGKGRPik 86 (124)
T COG4738 14 YEIIELLRILGIPRNV----ATTLVCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENGW-VDEREEKK--KGKGRPIK 86 (124)
T ss_pred HHHHHHHHHcCCCchH----HHHHHHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHccc-cchHHhcc--cCCCCCce
Confidence 3689999999999853 22333332321100 0111 268999999999995 21112222 23343 22
Q ss_pred c-ccccchHHHHhHhh
Q 048051 164 E-SVSKDTRGMLSLYE 178 (299)
Q Consensus 164 ~-~l~~Dv~glLsLYe 178 (299)
. .|+.+...+++-++
T Consensus 87 ~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 87 LYRLTVPFDEIVSEIE 102 (124)
T ss_pred EEEecCcHHHHHHHHH
Confidence 1 45666666666554
No 9
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=23.22 E-value=47 Score=35.63 Aligned_cols=96 Identities=20% Similarity=0.169 Sum_probs=59.3
Q ss_pred HHHHHhHcCCCCCCCchhhHHHHHHHH--hhcCccccccccccccccccccccccccchHHHHhHhhhhccCCCCc--hH
Q 048051 114 ERLERFSDGDAAGEENLFENALRFRLL--RHNGLPACTDIFKKFINKEGKLKESVSKDTRGMLSLYEASYLATQDK--DI 189 (299)
Q Consensus 114 ~~L~~iy~~~~~~~~DL~~~AL~FRLL--RqhGY~VS~DvF~~F~d~~G~F~~~l~~Dv~glLsLYeAS~l~~~gE--~i 189 (299)
++|.++++-+..-..=|-..|.+||-| |.+|| |++- ..+-.|+|-|- ++.--++| ||
T Consensus 271 ~iLNh~fDDIE~FvaRLQkAAeA~reLe~Rkr~~--------K~~k---------~~pgeG~LTlR--arpP~e~EfvD~ 331 (721)
T KOG3557|consen 271 DILNHVFDDIESFVARLQKAAEAARELEQRKRGR--------KSKK---------RAPGEGLLTLR--ARPPSEAEFVDC 331 (721)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cccC---------CCCCCceeEee--cCCCchHHHHHH
Confidence 466666653221112477889999998 55666 2221 23556777441 12222344 57
Q ss_pred HHHHHHHHHHHHHhhhcCCCCccHHHHHHhccCCccCCcc
Q 048051 190 LFEAMEFTKTELTQSVSLMDSQSSRHVVQALALPRHLRMS 229 (299)
Q Consensus 190 LdeA~~Fs~~~L~~~~~~~~~~L~~~V~~aL~~P~h~~l~ 229 (299)
+.+.+ .|-+.|-++-++|..+-+-+.-|-|..|+.-.+.
T Consensus 332 fqK~K-lsFNLLAKLk~hI~dPsApELvHFLFtPL~~Ive 370 (721)
T KOG3557|consen 332 FQKIK-LSFNLLAKLKGHIHDPSAPELVHFLFTPLALIVE 370 (721)
T ss_pred HHHHH-HHHHHHHHHHhhccCCChHHHHHHHhhhHHHHHH
Confidence 77754 3667777777788777788888999999865443
No 10
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=22.89 E-value=49 Score=29.11 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=12.2
Q ss_pred hhHHHHHHHhCCcc
Q 048051 93 MKLIDTIQRLGIGY 106 (299)
Q Consensus 93 L~lID~LqRLGI~y 106 (299)
|..||+|+.|||+-
T Consensus 98 L~~IDaiEalGidp 111 (149)
T PF11000_consen 98 LQAIDAIEALGIDP 111 (149)
T ss_pred HHHHhHHHHcCCCh
Confidence 56799999999985
No 11
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=21.02 E-value=92 Score=22.23 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.2
Q ss_pred chhhHHHHHHHhCCccccHHHHHHHH
Q 048051 91 ATMKLIDTIQRLGIGYHFEDEIMERL 116 (299)
Q Consensus 91 ~~L~lID~LqRLGI~yhFe~EI~~~L 116 (299)
++|.+|=.++.||.+= +||++.|
T Consensus 2 ~rL~~I~~~r~lGfsL---~eI~~~l 24 (65)
T PF09278_consen 2 ERLQFIRRLRELGFSL---EEIRELL 24 (65)
T ss_dssp HHHHHHHHHHHTT--H---HHHHHHH
T ss_pred hHHHHHHHHHHcCCCH---HHHHHHH
Confidence 5789999999999987 8999999
No 12
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=20.71 E-value=1.3e+02 Score=25.69 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=39.4
Q ss_pred CchhhHHHHHHHHhhcCccccccccccccccccc--cccccccchHHHHh--HhhhhccCCCCchHHHHHHHH
Q 048051 128 ENLFENALRFRLLRHNGLPACTDIFKKFINKEGK--LKESVSKDTRGMLS--LYEASYLATQDKDILFEAMEF 196 (299)
Q Consensus 128 ~DL~~~AL~FRLLRqhGY~VS~DvF~~F~d~~G~--F~~~l~~Dv~glLs--LYeAS~l~~~gE~iLdeA~~F 196 (299)
-+.+|++=+|+.|.+.||=-+---..-|.-++|. +...-..=+...|+ +.+|..+++.-|+|++-...+
T Consensus 47 VNpnTv~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s~eei~~~~~~~ 119 (125)
T COG1725 47 VNPNTVQRAYQELEREGIVETKRGKGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILELLKEI 119 (125)
T ss_pred CCHHHHHHHHHHHHHCCCEEEecCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3688999999999999986665544444433322 10000011222222 567777777766666554443
No 13
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=20.51 E-value=73 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHhhcCcccccccccccc
Q 048051 130 LFENALRFRLLRHNGLPACTDIFKKFI 156 (299)
Q Consensus 130 L~~~AL~FRLLRqhGY~VS~DvF~~F~ 156 (299)
...++|.=|+|+..||+|-+=.|-.+.
T Consensus 17 ~g~t~lk~r~L~~~G~~Vi~Ip~~eW~ 43 (58)
T PF08373_consen 17 TGSTKLKHRHLKALGYKVISIPYYEWN 43 (58)
T ss_pred chHHHHHHHHHHHCCCEEEEecHHHHH
Confidence 468999999999999999665555543
No 14
>PF12626 PolyA_pol_arg_C: Polymerase A arginine-rich C-terminus; PDB: 3AQN_A 3AQK_A 3AQM_B 3AQL_B.
Probab=20.09 E-value=1.5e+02 Score=25.02 Aligned_cols=28 Identities=29% Similarity=0.659 Sum_probs=22.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhCC
Q 048051 254 AKSDFNMVQSLHQRELAEIKRWWKQLGL 281 (299)
Q Consensus 254 AKlDFn~~Qs~hq~EL~~lsrWWk~l~l 281 (299)
|-.||=.+-+.--+++.++..||.+.--
T Consensus 65 AAyDFL~LR~~~ge~~~~l~~WW~~fq~ 92 (124)
T PF12626_consen 65 AAYDFLLLRAEAGEELSELAEWWTEFQE 92 (124)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 5678888877779999999999998754
Done!