Query 048053
Match_columns 75
No_of_seqs 205 out of 1051
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dim_A Cell division cycle 5-l 99.9 3E-28 1E-32 136.3 3.7 62 8-69 3-69 (70)
2 1h8a_C AMV V-MYB, MYB transfor 99.9 1.1E-27 3.6E-32 146.8 6.4 74 2-75 15-93 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.5E-26 5.1E-31 137.5 6.4 65 11-75 1-70 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 99.9 2.1E-26 7.3E-31 137.5 5.9 62 14-75 1-67 (107)
5 3zqc_A MYB3; transcription-DNA 99.9 7.4E-26 2.5E-30 139.3 7.4 63 13-75 1-68 (131)
6 3osg_A MYB21; transcription-DN 99.9 4.3E-26 1.5E-30 139.6 6.2 67 8-75 5-76 (126)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.4E-25 4.9E-30 141.4 5.4 73 3-75 47-124 (159)
8 1h89_C C-MYB, MYB proto-oncoge 99.9 2E-24 6.9E-29 136.2 2.5 65 11-75 3-72 (159)
9 2d9a_A B-MYB, MYB-related prot 99.9 1.9E-22 6.6E-27 109.5 5.4 53 8-60 2-59 (60)
10 1gvd_A MYB proto-oncogene prot 99.8 1.5E-21 5E-26 103.4 4.7 47 12-58 1-52 (52)
11 1guu_A C-MYB, MYB proto-oncoge 99.8 2E-21 7E-26 102.7 4.3 47 12-58 1-52 (52)
12 1ity_A TRF1; helix-turn-helix, 99.8 3.1E-21 1.1E-25 107.4 5.2 58 8-65 4-68 (69)
13 2din_A Cell division cycle 5-l 99.8 1.8E-21 6.1E-26 107.5 2.1 55 7-62 2-60 (66)
14 3sjm_A Telomeric repeat-bindin 99.8 6.1E-21 2.1E-25 105.3 4.0 51 10-60 7-64 (64)
15 1x41_A Transcriptional adaptor 99.8 3.9E-20 1.3E-24 100.6 5.6 52 8-59 2-58 (60)
16 2roh_A RTBP1, telomere binding 99.8 3.5E-20 1.2E-24 113.3 5.6 66 9-74 26-106 (122)
17 2juh_A Telomere binding protei 99.8 3.5E-20 1.2E-24 113.2 4.8 68 8-75 11-93 (121)
18 2llk_A Cyclin-D-binding MYB-li 99.8 5.7E-19 1.9E-23 99.6 5.3 56 3-60 12-71 (73)
19 1w0t_A Telomeric repeat bindin 99.8 3.8E-19 1.3E-23 94.4 4.2 44 13-56 1-51 (53)
20 2yum_A ZZZ3 protein, zinc fing 99.8 2.4E-19 8.1E-24 101.0 3.3 56 8-63 2-67 (75)
21 2cu7_A KIAA1915 protein; nucle 99.8 5.1E-19 1.8E-23 99.1 3.5 54 7-61 2-60 (72)
22 3zqc_A MYB3; transcription-DNA 99.7 2.5E-19 8.5E-24 110.0 1.5 64 3-67 43-111 (131)
23 2elk_A SPCC24B10.08C protein; 99.7 2.5E-18 8.5E-23 92.9 5.0 47 9-55 4-56 (58)
24 2ckx_A NGTRF1, telomere bindin 99.7 3.4E-17 1.2E-21 94.3 4.8 60 15-74 1-75 (83)
25 1gv2_A C-MYB, MYB proto-oncoge 99.7 2.4E-17 8.3E-22 97.5 2.8 55 3-58 45-104 (105)
26 2aje_A Telomere repeat-binding 99.7 9.8E-17 3.4E-21 95.9 4.7 62 8-69 7-82 (105)
27 1ign_A Protein (RAP1); RAP1,ye 99.6 1.8E-16 6.3E-21 105.8 4.6 66 9-74 3-107 (246)
28 2k9n_A MYB24; R2R3 domain, DNA 99.6 6.5E-17 2.2E-21 96.2 1.9 53 4-57 43-100 (107)
29 1h8a_C AMV V-MYB, MYB transfor 99.6 1.6E-16 5.3E-21 97.0 2.9 55 3-58 68-127 (128)
30 2ltp_A Nuclear receptor corepr 99.4 4.4E-17 1.5E-21 94.7 0.0 52 5-57 7-63 (89)
31 3osg_A MYB21; transcription-DN 99.6 1.6E-16 5.5E-21 96.9 2.0 54 3-57 51-109 (126)
32 2yus_A SWI/SNF-related matrix- 99.6 1.5E-15 5.1E-20 86.6 4.5 46 8-54 12-62 (79)
33 2cqr_A RSGI RUH-043, DNAJ homo 99.5 7E-15 2.4E-19 82.8 3.3 51 7-57 11-69 (73)
34 2cjj_A Radialis; plant develop 99.3 1.4E-12 4.7E-17 76.4 3.2 43 13-55 7-57 (93)
35 1x58_A Hypothetical protein 49 99.3 7.6E-12 2.6E-16 68.2 5.1 45 12-57 6-58 (62)
36 2eqr_A N-COR1, N-COR, nuclear 99.1 3.6E-10 1.2E-14 61.2 5.4 47 8-55 6-57 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 99.0 2.9E-10 9.8E-15 63.6 4.0 48 10-57 4-58 (72)
38 1fex_A TRF2-interacting telome 98.8 9.6E-10 3.3E-14 59.3 1.9 43 14-56 2-58 (59)
39 2iw5_B Protein corest, REST co 98.8 7.3E-09 2.5E-13 68.8 4.3 45 12-57 131-180 (235)
40 2llk_A Cyclin-D-binding MYB-li 98.7 7.2E-09 2.5E-13 58.0 1.7 28 48-75 10-37 (73)
41 1wgx_A KIAA1903 protein; MYB D 98.5 1.1E-07 3.8E-12 53.2 4.1 45 13-57 7-59 (73)
42 3hm5_A DNA methyltransferase 1 98.2 1.4E-06 4.6E-11 50.8 4.0 42 14-56 30-81 (93)
43 2din_A Cell division cycle 5-l 98.1 1.3E-06 4.6E-11 47.3 1.7 22 54-75 2-23 (66)
44 2yqk_A Arginine-glutamic acid 98.0 6.1E-06 2.1E-10 44.6 3.9 45 8-53 3-53 (63)
45 2xag_B REST corepressor 1; ami 97.9 8.8E-06 3E-10 58.9 4.2 42 13-55 379-425 (482)
46 4eef_G F-HB80.4, designed hema 97.9 2.8E-06 9.7E-11 47.5 0.9 40 13-52 19-66 (74)
47 2ebi_A DNA binding protein GT- 97.8 7E-06 2.4E-10 46.5 1.2 44 13-56 3-64 (86)
48 2d9a_A B-MYB, MYB-related prot 97.5 3.3E-05 1.1E-09 40.9 1.9 20 56-75 3-22 (60)
49 2lr8_A CAsp8-associated protei 96.6 1.4E-05 5E-10 44.0 0.0 42 15-56 15-62 (70)
50 1ug2_A 2610100B20RIK gene prod 97.5 0.00013 4.4E-09 42.3 3.6 43 13-55 32-81 (95)
51 4b4c_A Chromodomain-helicase-D 97.4 0.00012 4.2E-09 46.9 4.0 32 10-41 130-161 (211)
52 2crg_A Metastasis associated p 97.3 0.00017 5.7E-09 39.6 2.9 40 13-53 7-52 (70)
53 4a69_C Nuclear receptor corepr 97.3 0.0002 7E-09 41.4 3.4 39 14-53 43-86 (94)
54 1x41_A Transcriptional adaptor 97.2 0.00014 4.7E-09 38.6 1.8 20 56-75 3-22 (60)
55 4iej_A DNA methyltransferase 1 97.2 0.00056 1.9E-08 39.7 4.0 43 13-56 29-81 (93)
56 2xb0_X Chromo domain-containin 97.0 0.00028 9.7E-09 47.7 2.4 27 15-41 169-195 (270)
57 1ity_A TRF1; helix-turn-helix, 97.0 0.00034 1.2E-08 37.9 1.8 22 54-75 3-24 (69)
58 2elk_A SPCC24B10.08C protein; 96.8 0.00056 1.9E-08 36.0 1.9 20 56-75 4-23 (58)
59 2ltp_A Nuclear receptor corepr 95.7 0.00026 8.8E-09 40.4 0.0 23 53-75 8-30 (89)
60 3sjm_A Telomeric repeat-bindin 96.7 0.0006 2.1E-08 36.7 1.4 17 59-75 9-25 (64)
61 3hm5_A DNA methyltransferase 1 96.5 0.00087 3E-08 38.8 1.3 28 44-75 17-44 (93)
62 1ofc_X ISWI protein; nuclear p 96.1 0.013 4.6E-07 40.2 5.5 28 15-42 111-138 (304)
63 1ofc_X ISWI protein; nuclear p 95.5 0.013 4.5E-07 40.2 3.8 44 13-56 211-274 (304)
64 1ign_A Protein (RAP1); RAP1,ye 95.4 0.011 3.6E-07 39.6 2.8 19 13-31 93-111 (246)
65 2juh_A Telomere binding protei 95.3 0.0065 2.2E-07 36.6 1.6 31 8-39 72-103 (121)
66 2cqr_A RSGI RUH-043, DNAJ homo 95.3 0.0083 2.8E-07 33.1 1.8 18 57-74 14-31 (73)
67 2yus_A SWI/SNF-related matrix- 95.3 0.0087 3E-07 33.4 1.9 18 58-75 15-32 (79)
68 2aje_A Telomere repeat-binding 94.9 0.016 5.4E-07 34.1 2.3 19 56-74 8-26 (105)
69 2roh_A RTBP1, telomere binding 94.8 0.024 8.3E-07 34.2 3.0 29 8-36 86-115 (122)
70 1irz_A ARR10-B; helix-turn-hel 94.4 0.083 2.8E-06 28.4 4.3 43 11-54 4-56 (64)
71 1x58_A Hypothetical protein 49 94.2 0.025 8.4E-07 30.4 1.9 16 59-74 6-21 (62)
72 2y9y_A Imitation switch protei 93.6 0.12 4.1E-06 36.4 5.0 43 13-55 227-289 (374)
73 3cz6_A DNA-binding protein RAP 86.7 0.52 1.8E-05 29.8 2.8 25 10-34 110-142 (168)
74 2xag_B REST corepressor 1; ami 86.4 0.13 4.6E-06 37.2 0.0 37 14-51 189-230 (482)
75 4b4c_A Chromodomain-helicase-D 83.7 0.49 1.7E-05 29.9 1.7 30 12-41 5-36 (211)
76 2xb0_X Chromo domain-containin 68.9 3.8 0.00013 27.5 2.8 29 13-41 2-32 (270)
77 2li6_A SWI/SNF chromatin-remod 68.1 1.9 6.5E-05 25.1 1.1 34 24-57 53-98 (116)
78 1ig6_A MRF-2, modulator recogn 66.9 1.9 6.4E-05 24.7 0.9 34 24-57 37-87 (107)
79 3i4p_A Transcriptional regulat 62.3 4 0.00014 24.5 1.8 40 20-59 3-46 (162)
80 2eqy_A RBP2 like, jumonji, at 59.5 2.1 7.2E-05 25.2 0.2 34 24-57 46-95 (122)
81 2cxy_A BAF250B subunit, HBAF25 59.3 2.2 7.6E-05 25.1 0.3 34 24-57 55-104 (125)
82 2kk0_A AT-rich interactive dom 57.9 3.5 0.00012 25.0 1.0 46 24-69 68-132 (145)
83 1c20_A DEAD ringer protein; DN 55.7 2.8 9.7E-05 24.7 0.3 34 24-57 56-106 (128)
84 2jxj_A Histone demethylase jar 54.9 1.5 5.3E-05 24.5 -0.9 34 24-57 40-89 (96)
85 2rq5_A Protein jumonji; develo 54.9 2.5 8.6E-05 25.0 -0.0 47 24-73 46-109 (121)
86 2jrz_A Histone demethylase jar 54.0 3.1 0.00011 24.2 0.3 34 24-57 44-93 (117)
87 2lm1_A Lysine-specific demethy 52.7 3.2 0.00011 23.6 0.2 34 24-57 48-97 (107)
88 3h8k_B Autocrine motility fact 43.0 17 0.00058 16.1 1.8 10 17-26 1-10 (28)
89 2e1c_A Putative HTH-type trans 38.7 25 0.00085 21.2 2.7 41 19-59 26-70 (171)
90 1kkx_A Transcription regulator 38.5 3 0.0001 24.6 -1.5 33 25-57 53-97 (123)
91 2y9y_A Imitation switch protei 35.4 44 0.0015 23.4 3.8 28 15-42 124-151 (374)
92 2ba3_A NIKA; dimer, bacterial 30.6 47 0.0016 15.8 2.5 21 14-34 19-39 (51)
93 1y66_A Engrailed homeodomain; 30.2 36 0.0012 16.7 1.9 18 16-33 3-20 (52)
94 2dbb_A Putative HTH-type trans 27.3 49 0.0017 19.0 2.6 38 20-57 9-50 (151)
95 2dll_A Interferon regulatory f 26.9 1E+02 0.0034 18.0 4.0 44 13-57 43-88 (121)
96 1m0d_A Endonuclease, endodeoxy 26.4 62 0.0021 19.6 2.9 29 13-41 55-83 (138)
97 2cyy_A Putative HTH-type trans 25.3 41 0.0014 19.4 2.0 39 20-58 7-49 (151)
98 2ia0_A Putative HTH-type trans 24.5 42 0.0014 20.2 2.0 40 19-58 16-59 (171)
99 3s1b_A Mini-Z; VEGF, cystine k 24.1 60 0.0021 14.6 2.0 16 45-60 3-19 (34)
100 2p5v_A Transcriptional regulat 22.8 57 0.0019 19.0 2.3 39 20-58 10-52 (162)
101 2p1m_A SKP1-like protein 1A; F 22.1 77 0.0026 18.9 2.8 24 43-73 129-152 (160)
102 2cg4_A Regulatory protein ASNC 21.9 59 0.002 18.7 2.2 37 20-56 8-48 (152)
103 2k0m_A Uncharacterized protein 21.9 34 0.0012 19.6 1.1 32 43-74 16-47 (104)
104 2irf_G IRF-2, interferon regul 21.2 1.3E+02 0.0045 17.3 4.6 45 12-57 41-87 (113)
No 1
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=3e-28 Score=136.28 Aligned_cols=62 Identities=35% Similarity=0.828 Sum_probs=59.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHH
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEE 69 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd 69 (75)
..|.+++|+||+|||++|+++|..||.++|..|| ||+.||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5788999999999999999999999988999999 4999999999999999999999999997
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.94 E-value=1.1e-27 Score=146.83 Aligned_cols=74 Identities=34% Similarity=0.667 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 2 VRAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 2 ~r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
.|+..+++|++++|+||+|||++|+++|..||.++|..|| ||+.||++||.++|+|.+++++||+|||..|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 4667789999999999999999999999999987899999 4999999999999999999999999999999863
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.93 E-value=1.5e-26 Score=137.45 Aligned_cols=65 Identities=38% Similarity=0.777 Sum_probs=61.3
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 11 GMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 11 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
.+++|+||+|||++|+.+|..||.++|..||. |+.||++||.++|+|.+++++||+|||..|+++
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 47899999999999999999999879999994 999999999999999999999999999999863
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.93 E-value=2.1e-26 Score=137.53 Aligned_cols=62 Identities=29% Similarity=0.713 Sum_probs=59.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
||+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||+|||.+|+++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~ 67 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Confidence 6899999999999999999988999999 5999999999999999999999999999999863
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.93 E-value=7.4e-26 Score=139.26 Aligned_cols=63 Identities=37% Similarity=0.703 Sum_probs=59.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
.||+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||+|||++|+++
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 68 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRN 68 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHH
Confidence 37999999999999999999988999999 4999999999999999999999999999999863
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.93 E-value=4.3e-26 Score=139.61 Aligned_cols=67 Identities=31% Similarity=0.650 Sum_probs=62.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
.++..++|+||+|||++|+.+|..||. +|..|| ||+.||++||.++|+|.+++++||+|||++|+++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 76 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQK 76 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHH
Confidence 467789999999999999999999996 999999 5999999999999999999999999999999864
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.92 E-value=1.4e-25 Score=141.43 Aligned_cols=73 Identities=34% Similarity=0.669 Sum_probs=67.8
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
|+..+++|++++|+||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+++++||++||..|+++
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 124 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 124 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHH
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHH
Confidence 445678999999999999999999999999987899999 4999999999999999999999999999999863
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.89 E-value=2e-24 Score=136.18 Aligned_cols=65 Identities=31% Similarity=0.716 Sum_probs=28.5
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 11 GMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 11 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
++++++||+|||++|+++|..||.++|..||. |+.||++||.++|+|.+++++||+|||+.|+++
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 72 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKL 72 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHH
Confidence 36899999999999999999999889999994 999999999999999999999999999999863
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=1.9e-22 Score=109.54 Aligned_cols=53 Identities=28% Similarity=0.697 Sum_probs=49.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCC
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIK 60 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~ 60 (75)
.+|++++++||+|||++|+++|.+||.++|..|| ||+.||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4688999999999999999999999987999999 5999999999999999875
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.84 E-value=1.5e-21 Score=103.37 Aligned_cols=47 Identities=45% Similarity=0.965 Sum_probs=44.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~ 58 (75)
+++|+||+|||++|+++|..||.++|..|| ||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999977899999 49999999999999985
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.84 E-value=2e-21 Score=102.75 Aligned_cols=47 Identities=30% Similarity=0.786 Sum_probs=42.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD 58 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~ 58 (75)
+++|+||+|||++|+++|..||.++|..|| ||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 578999999999999999999977999999 49999999999999985
No 12
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.84 E-value=3.1e-21 Score=107.44 Aligned_cols=58 Identities=28% Similarity=0.516 Sum_probs=53.1
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-------CChHHHHHHHHhhcCCCCCCCCCC
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIKHGNYT 65 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-------rt~~qcr~Rw~~~L~~~~~~~~wt 65 (75)
.+|..++++||+|||++|+.+|..||.++|..|| ||+.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4677899999999999999999999988999998 599999999999999999987654
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-21 Score=107.53 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=51.4
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc----CChHHHHHHHHhhcCCCCCCC
Q 048053 7 YDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPDIKHG 62 (75)
Q Consensus 7 ~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----rt~~qcr~Rw~~~L~~~~~~~ 62 (75)
+++|++++++||+|||++|+.+|+.||. +|..|| ||+.||++||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHHHHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhcccCcCHHHHHHHHHHHhChHhcCC
Confidence 6899999999999999999999999995 999999 599999999999999977664
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.82 E-value=6.1e-21 Score=105.26 Aligned_cols=51 Identities=29% Similarity=0.545 Sum_probs=45.2
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-------CChHHHHHHHHhhcCCCCC
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIK 60 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-------rt~~qcr~Rw~~~L~~~~~ 60 (75)
...+|++||+|||++|+++|.+||.++|..|| ||+.||++||+++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 34589999999999999999999988999998 4999999999999999874
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=3.9e-20 Score=100.60 Aligned_cols=52 Identities=19% Similarity=0.492 Sum_probs=47.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCC
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDI 59 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~ 59 (75)
.+|++.+++||+|||++|+++|..||.++|..|| ||+.||++||.++|.+..
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 3578999999999999999999999988999999 599999999999998753
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.81 E-value=3.5e-20 Score=113.33 Aligned_cols=66 Identities=14% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc---------CChHHHHHHHHhhc-----CCCCCCCCCCHHH-HHHHh
Q 048053 9 GRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEE-ETKRK 73 (75)
Q Consensus 9 ~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia---------rt~~qcr~Rw~~~L-----~~~~~~~~wt~eE-d~~L~ 73 (75)
+...++++||+|||+.|+++|++||.++|..|+ ||+.||++||+|++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 455689999999999999999999988999997 59999999999999 8999999999999 67776
Q ss_pred c
Q 048053 74 R 74 (75)
Q Consensus 74 ~ 74 (75)
.
T Consensus 106 ~ 106 (122)
T 2roh_A 106 A 106 (122)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.80 E-value=3.5e-20 Score=113.20 Aligned_cols=68 Identities=12% Similarity=0.226 Sum_probs=62.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc---------CChHHHHHHHHhhcC-----CCCCCC-CCCHHHHHHH
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP---------KSGKSCRLRWMNYLR-----PDIKHG-NYTKEEETKR 72 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia---------rt~~qcr~Rw~~~L~-----~~~~~~-~wt~eEd~~L 72 (75)
.++..++++||+|||+.|+++|++||.++|+.|+ ||+.||++||+++|+ |.++++ +|+++|+.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 5678899999999999999999999988999997 499999999999998 999998 9999999988
Q ss_pred hcC
Q 048053 73 KRL 75 (75)
Q Consensus 73 ~~l 75 (75)
+.|
T Consensus 91 ~~~ 93 (121)
T 2juh_A 91 LAA 93 (121)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 18
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.77 E-value=5.7e-19 Score=99.64 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=43.8
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc----CChHHHHHHHHhhcCCCCC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPDIK 60 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----rt~~qcr~Rw~~~L~~~~~ 60 (75)
|+..+++|++++|+||+|||++|+++|.+||. +|+.|| ||+.||++||+. |....+
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~lgRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAALGRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHHTSCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHhCCCHHHHHHHHHH-HHHHcc
Confidence 56678999999999999999999999999995 799999 699999999985 554443
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.76 E-value=3.8e-19 Score=94.42 Aligned_cols=44 Identities=34% Similarity=0.665 Sum_probs=41.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc-------CChHHHHHHHHhhcC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLR 56 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-------rt~~qcr~Rw~~~L~ 56 (75)
++++||+|||+.|+++|..||.++|..|| ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 57999999999999999999988999997 599999999999885
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-19 Score=101.03 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=51.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCCcccc-----CChHHHHHHHHhhcCCCCCCCC
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGH-----WNWAQLP-----KSGKSCRLRWMNYLRPDIKHGN 63 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~-----~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~~~ 63 (75)
.+|++.+++||+|||++|+++|..||. ++|..|| ||+.||++||+++|.+.++.+.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999996 6899999 5999999999999998777653
No 21
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.75 E-value=5.1e-19 Score=99.14 Aligned_cols=54 Identities=17% Similarity=0.393 Sum_probs=49.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCCCCCC
Q 048053 7 YDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKH 61 (75)
Q Consensus 7 ~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~~~~~ 61 (75)
..+|.+++++||+|||++|+++|..||. +|..|| ||+.||++||+++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999995 999999 59999999999999886655
No 22
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.74 E-value=2.5e-19 Score=110.01 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=57.6
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCCCCCCCCCHH
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKE 67 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~~~~~~wt~e 67 (75)
|+..+++|++++|+||+|||++|+.+|..|| .+|..||+ |+.||++||+++|++.+..++|+.+
T Consensus 43 Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 43 RWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 3445789999999999999999999999999 69999994 9999999999999999988887753
No 23
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.74 E-value=2.5e-18 Score=92.93 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=42.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc------CChHHHHHHHHhhc
Q 048053 9 GRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP------KSGKSCRLRWMNYL 55 (75)
Q Consensus 9 ~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia------rt~~qcr~Rw~~~L 55 (75)
+..+.+++||+|||++|+++|.+||.++|..|| ||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999988999999 49999999999875
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.68 E-value=3.4e-17 Score=94.29 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccc---------CChHHHHHHHHhhc-----CCCCCCC-CCCHHHHHHHhc
Q 048053 15 GAWSKEEDDKLRAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHG-NYTKEEETKRKR 74 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia---------rt~~qcr~Rw~~~L-----~~~~~~~-~wt~eEd~~L~~ 74 (75)
++||+|||+.|+++|++||.++|+.|+ ||+.||++||+++| +|.++++ +..++....++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~ 75 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLA 75 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHH
Confidence 489999999999999999988999997 49999999999988 6776654 788888777764
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.66 E-value=2.4e-17 Score=97.49 Aligned_cols=55 Identities=24% Similarity=0.444 Sum_probs=48.4
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~ 58 (75)
|+..+++|++++|+||+|||++|+.+|..|| .+|..||+ |+.||++||..+|...
T Consensus 45 Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 45 RWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHhccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 3445789999999999999999999999999 59999994 9999999999988753
No 26
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.65 E-value=9.8e-17 Score=95.87 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=53.9
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc---------CChHHHHHHHHhhc-----CCCCCCCCCCHHHH
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEEE 69 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia---------rt~~qcr~Rw~~~L-----~~~~~~~~wt~eEd 69 (75)
.++..++++||+|||+.|+.+|++||.++|..|+ ||+.||++||++++ +|.++++.-+++|-
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~ 82 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQEL 82 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHH
Confidence 4567899999999999999999999988999997 49999999999999 78888887666654
No 27
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.63 E-value=1.8e-16 Score=105.84 Aligned_cols=66 Identities=18% Similarity=0.330 Sum_probs=55.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----CccccC-----ChHHHHHHHHhhcCCCCC------------------
Q 048053 9 GRGMKKGAWSKEEDDKLRAYILKYGHWN-----WAQLPK-----SGKSCRLRWMNYLRPDIK------------------ 60 (75)
Q Consensus 9 ~~~~~k~~Wt~eED~~L~~~v~~~g~~~-----W~~Iar-----t~~qcr~Rw~~~L~~~~~------------------ 60 (75)
.+.+++++||+|||+.|+++|.++|..+ |..||+ |++|||+||+++|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 3568899999999999999999998532 999994 999999999999999987
Q ss_pred -----------CCCCCHHHHHHHhc
Q 048053 61 -----------HGNYTKEEETKRKR 74 (75)
Q Consensus 61 -----------~~~wt~eEd~~L~~ 74 (75)
+..||.+||-.|+.
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~ 107 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAI 107 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHH
T ss_pred ceeeeccCccccCccchhccHHHHH
Confidence 78999999988763
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.63 E-value=6.5e-17 Score=96.23 Aligned_cols=53 Identities=30% Similarity=0.555 Sum_probs=48.1
Q ss_pred CCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhcCC
Q 048053 4 APTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 4 ~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L~~ 57 (75)
+..+++|++++|+||+|||++|+.+|..|| .+|..|| ||+.||++||..++..
T Consensus 43 w~~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 43 WNNYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHHHSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 345689999999999999999999999999 5999999 4999999999998765
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.62 E-value=1.6e-16 Score=96.99 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=48.8
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCCC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~~ 58 (75)
|+..+++|++++|+||+|||+.|+++|..|| .+|..||+ |+.||++||..+|...
T Consensus 68 Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 68 RWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHhcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 3445789999999999999999999999999 59999994 9999999999988753
No 30
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-17 Score=94.67 Aligned_cols=52 Identities=19% Similarity=0.481 Sum_probs=47.3
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCC
Q 048053 5 PTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRP 57 (75)
Q Consensus 5 ~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~ 57 (75)
+....|.+.+|+||+|||++|+++|..||. +|..||. |+.||++||+++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 345789999999999999999999999995 9999994 999999999999875
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.60 E-value=1.6e-16 Score=96.92 Aligned_cols=54 Identities=28% Similarity=0.529 Sum_probs=48.2
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCC
Q 048053 3 RAPTYDGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRP 57 (75)
Q Consensus 3 r~~~~~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~ 57 (75)
|+..+++|++++|+||+|||++|+.+|..|| .+|..||+ |+.||++||..+++.
T Consensus 51 Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 51 RWKNYLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp HHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhhhcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 3345689999999999999999999999999 69999994 999999999998753
No 32
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=86.62 Aligned_cols=46 Identities=15% Similarity=0.399 Sum_probs=42.2
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhh
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNY 54 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~ 54 (75)
..+...+++||+|||++|+++|.+|| ++|..|| ||+.||++||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 44567799999999999999999999 7999999 5999999999997
No 33
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.51 E-value=7e-15 Score=82.78 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=44.8
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhC---CCCCcccc-----CChHHHHHHHHhhcCC
Q 048053 7 YDGRGMKKGAWSKEEDDKLRAYILKYG---HWNWAQLP-----KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 7 ~~~~~~~k~~Wt~eED~~L~~~v~~~g---~~~W~~Ia-----rt~~qcr~Rw~~~L~~ 57 (75)
-..+.+.+++||++||++|+.++..|| +.+|..|| ||+.||++||.+++..
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 356778899999999999999999999 35899999 4999999999988753
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.29 E-value=1.4e-12 Score=76.37 Aligned_cols=43 Identities=14% Similarity=0.377 Sum_probs=38.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCCcccc-----CChHHHHHHHHhhc
Q 048053 13 KKGAWSKEEDDKLRAYILKYG---HWNWAQLP-----KSGKSCRLRWMNYL 55 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g---~~~W~~Ia-----rt~~qcr~Rw~~~L 55 (75)
.+++||+|||++|..++..|| +..|..|| ||+.||++||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 478999999999999999997 46799999 49999999999875
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=7.6e-12 Score=68.24 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=40.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCcccc--------CChHHHHHHHHhhcCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLP--------KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia--------rt~~qcr~Rw~~~L~~ 57 (75)
-++.+||+|||+.|+++|++||. +|..|+ ||.-++++||++....
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 47889999999999999999996 999999 3999999999987654
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.6e-10 Score=61.15 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=40.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHhhc
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~~L 55 (75)
.+..-..++||++|++++.+++..|| .+|..|| +|..||..+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 44455779999999999999999999 6999999 49999999997653
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.01 E-value=2.9e-10 Score=63.64 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=41.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCCcccc----CChHHHHHHHHhhcCC
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGH---WNWAQLP----KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia----rt~~qcr~Rw~~~L~~ 57 (75)
++...+.||.|||++|..++..|+. ..|..|| ||..||+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4567889999999999999999973 5699999 6999999999987654
No 38
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.84 E-value=9.6e-10 Score=59.31 Aligned_cols=43 Identities=26% Similarity=0.454 Sum_probs=37.3
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCCccccC------ChHHHHHHHHhhcC
Q 048053 14 KGAWSKEEDDKLRAYILKY--------GHWNWAQLPK------SGKSCRLRWMNYLR 56 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~--------g~~~W~~Iar------t~~qcr~Rw~~~L~ 56 (75)
|.+||+|||+.|+..|..+ |..-|..+++ |-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 4445888874 89999999999875
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.75 E-value=7.3e-09 Score=68.78 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=40.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhcCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRP 57 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L~~ 57 (75)
...++||.||++.+++++..|| .+|..||+ |..||++.|.++...
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999 69999994 999999999988753
No 40
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.65 E-value=7.2e-09 Score=58.03 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 48 RLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 48 r~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
.-||.++|+|.+++++||+|||++|++|
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l 37 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKEL 37 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHH
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHH
Confidence 4589999999999999999999999864
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.52 E-value=1.1e-07 Score=53.20 Aligned_cols=45 Identities=20% Similarity=0.447 Sum_probs=38.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCCcccc-----CChHHHHHHHHhhcCC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGH---WNWAQLP-----KSGKSCRLRWMNYLRP 57 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----rt~~qcr~Rw~~~L~~ 57 (75)
..+.||.+|+++|..++..|+. +.|..|| +|..+|+.||..++.-
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999974 4699999 4999999999987654
No 42
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.22 E-value=1.4e-06 Score=50.81 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=37.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc----------CChHHHHHHHHhhcC
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP----------KSGKSCRLRWMNYLR 56 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----------rt~~qcr~Rw~~~L~ 56 (75)
.++||.||++.|++++.+|| ..|..|+ ||..++++||..+..
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999 5999988 388899999987654
No 43
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.3e-06 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=20.3
Q ss_pred hcCCCCCCCCCCHHHHHHHhcC
Q 048053 54 YLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 54 ~L~~~~~~~~wt~eEd~~L~~l 75 (75)
+|+|.+++++||+|||++|+++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~ 23 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHL 23 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHH
Confidence 7999999999999999999863
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=6.1e-06 Score=44.60 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCCccccC------ChHHHHHHHHh
Q 048053 8 DGRGMKKGAWSKEEDDKLRAYILKYGHWNWAQLPK------SGKSCRLRWMN 53 (75)
Q Consensus 8 ~~~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar------t~~qcr~Rw~~ 53 (75)
..|.+...+||+||-++..+++.+|| .+|..|++ +..||..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 45788899999999999999999999 59999983 88999887754
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.92 E-value=8.8e-06 Score=58.87 Aligned_cols=42 Identities=24% Similarity=0.362 Sum_probs=38.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHHHhhc
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRWMNYL 55 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw~~~L 55 (75)
...+||.+|-.++++++.+|| .+|..||+ |..||+..|.++-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 468999999999999999999 59999994 9999999998753
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.89 E-value=2.8e-06 Score=47.49 Aligned_cols=40 Identities=8% Similarity=0.225 Sum_probs=33.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCCcccc-----CChHHHHHHHH
Q 048053 13 KKGAWSKEEDDKLRAYILKYGH---WNWAQLP-----KSGKSCRLRWM 52 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----rt~~qcr~Rw~ 52 (75)
..++||.+|++.|..++..|+. ..|.+|| +|..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3568999999999999999965 3799999 49999999885
No 47
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.76 E-value=7e-06 Score=46.48 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=35.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCCcccc---------CChHHHHHHHHhhcC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGH---------WNWAQLP---------KSGKSCRLRWMNYLR 56 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~---------~~W~~Ia---------rt~~qcr~Rw~~~L~ 56 (75)
+...||.+|-..|+.+...... ..|..|| +|+.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999875311 2599999 399999999998653
No 48
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.55 E-value=3.3e-05 Score=40.88 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=17.7
Q ss_pred CCCCCCCCCCHHHHHHHhcC
Q 048053 56 RPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~l 75 (75)
+|.+++++||+|||++|+++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~ 22 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRAL 22 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 57899999999999999864
No 49
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.64 E-value=1.4e-05 Score=43.99 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCCccccC----ChHHHHHHHHhhcC
Q 048053 15 GAWSKEEDDKLRAYILKYGH--WNWAQLPK----SGKSCRLRWMNYLR 56 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~--~~W~~Iar----t~~qcr~Rw~~~L~ 56 (75)
-.||.|||..|+..+++-|. .-|..||. |+.|+.+||...+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMK 62 (70)
Confidence 46999999999999999986 36999994 99999999988654
No 50
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.45 E-value=0.00013 Score=42.30 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=36.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCCcccc-----CChHHHHHHHHhhc
Q 048053 13 KKGAWSKEEDDKLRAYILKYGH--WNWAQLP-----KSGKSCRLRWMNYL 55 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~--~~W~~Ia-----rt~~qcr~Rw~~~L 55 (75)
+---||.|||..++...++-|. .-|..|| ++++|+.+||+..+
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3446999999999999999985 3688888 49999999998865
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.45 E-value=0.00012 Score=46.93 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=27.6
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCCcccc
Q 048053 10 RGMKKGAWSKEEDDKLRAYILKYGHWNWAQLP 41 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia 41 (75)
+......||.+||..|+.+|.+||.++|..|-
T Consensus 130 ~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir 161 (211)
T 4b4c_A 130 AAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK 161 (211)
T ss_dssp CCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence 33345579999999999999999999999887
No 52
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00017 Score=39.65 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=35.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccccC------ChHHHHHHHHh
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLPK------SGKSCRLRWMN 53 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Iar------t~~qcr~Rw~~ 53 (75)
...+||++|-++..+++..|| .+|..|++ |..||..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 456899999999999999999 59999984 88899888754
No 53
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.31 E-value=0.0002 Score=41.39 Aligned_cols=39 Identities=21% Similarity=0.431 Sum_probs=34.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCcccc-----CChHHHHHHHHh
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLP-----KSGKSCRLRWMN 53 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-----rt~~qcr~Rw~~ 53 (75)
...||++|-++..+++..|| .+|..|| +|..||-.-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999 6999999 499999988853
No 54
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.22 E-value=0.00014 Score=38.58 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=17.3
Q ss_pred CCCCCCCCCCHHHHHHHhcC
Q 048053 56 RPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~l 75 (75)
.+.+.+++||+|||++|+++
T Consensus 3 s~~~~~~~WT~eED~~L~~~ 22 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEA 22 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 46789999999999999863
No 55
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.15 E-value=0.00056 Score=39.67 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=36.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc----------CChHHHHHHHHhhcC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP----------KSGKSCRLRWMNYLR 56 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia----------rt~~qcr~Rw~~~L~ 56 (75)
....||.||...|.+++..|+ -.|..|+ ||-.+.++||..+..
T Consensus 29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999 5998887 377889999987643
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.05 E-value=0.00028 Score=47.73 Aligned_cols=27 Identities=44% Similarity=0.871 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCcccc
Q 048053 15 GAWSKEEDDKLRAYILKYGHWNWAQLP 41 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia 41 (75)
..|+.+||..|+..|.+||.++|..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 469999999999999999999999997
No 57
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=96.96 E-value=0.00034 Score=37.93 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=18.2
Q ss_pred hcCCCCCCCCCCHHHHHHHhcC
Q 048053 54 YLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 54 ~L~~~~~~~~wt~eEd~~L~~l 75 (75)
...|..++++||+|||+.|+++
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~ 24 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSG 24 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHH
Confidence 3567788999999999999863
No 58
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.83 E-value=0.00056 Score=36.01 Aligned_cols=20 Identities=15% Similarity=-0.017 Sum_probs=16.4
Q ss_pred CCCCCCCCCCHHHHHHHhcC
Q 048053 56 RPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~l 75 (75)
+..+.+++||++||.+|+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~ 23 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDA 23 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH
Confidence 44577889999999999863
No 59
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.73 E-value=0.00026 Score=40.43 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.0
Q ss_pred hhcCCCCCCCCCCHHHHHHHhcC
Q 048053 53 NYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 53 ~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
..++|.+++++||.|||.+|+++
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~ 30 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKG 30 (89)
Confidence 35788999999999999999864
No 60
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=96.67 E-value=0.0006 Score=36.71 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHHHhcC
Q 048053 59 IKHGNYTKEEETKRKRL 75 (75)
Q Consensus 59 ~~~~~wt~eEd~~L~~l 75 (75)
.++++||+|||+.|+++
T Consensus 9 ~kk~~WT~eED~~L~~~ 25 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAG 25 (64)
T ss_dssp -CCCCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 46889999999999863
No 61
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.49 E-value=0.00087 Score=38.83 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.6
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCHHHHHHHhcC
Q 048053 44 GKSCRLRWMNYLRPDIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 44 ~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~l 75 (75)
+.=+.++|.++|.+ ++||.||+..|++|
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L 44 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDL 44 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHH
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHH
Confidence 34467899999987 79999999999875
No 62
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.05 E-value=0.013 Score=40.17 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccC
Q 048053 15 GAWSKEEDDKLRAYILKYGHWNWAQLPK 42 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~~~W~~Iar 42 (75)
+.||..+...++.++.+||..+|..||.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ 138 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAK 138 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTT
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4699999999999999999999999994
No 63
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.52 E-value=0.013 Score=40.21 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCCcccc-----------------CChHHHHHHHHhhcC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGH---WNWAQLP-----------------KSGKSCRLRWMNYLR 56 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----------------rt~~qcr~Rw~~~L~ 56 (75)
+...||.+||..|+-++.+||. ++|..|. ||+.++..|=...|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 5668999999999999999999 8898885 488888777666553
No 64
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.37 E-value=0.011 Score=39.59 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=17.0
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 048053 13 KKGAWSKEEDDKLRAYILK 31 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~ 31 (75)
-|.+||.+||-.|...+.+
T Consensus 93 iK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 93 IKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp SCCCCCHHHHHHHHHHHHH
T ss_pred ccCccchhccHHHHHHHHH
Confidence 4789999999999998876
No 65
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.33 E-value=0.0065 Score=36.63 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=27.2
Q ss_pred CCCCCccC-CCCHHHHHHHHHHHHHhCCCCCcc
Q 048053 8 DGRGMKKG-AWSKEEDDKLRAYILKYGHWNWAQ 39 (75)
Q Consensus 8 ~~~~~~k~-~Wt~eED~~L~~~v~~~g~~~W~~ 39 (75)
..|.+++| +|+++|+.+|+.+...+| +.|.+
T Consensus 72 ~~p~~krg~~~p~e~~~rv~~~h~~~g-n~~~~ 103 (121)
T 2juh_A 72 IAPQQRRGEPVPQDLLDRVLAAHAYWS-QQQGK 103 (121)
T ss_dssp TCSTTCCCSCCCHHHHHHHHHHHHHHH-HHHCC
T ss_pred cCCcccCCCCCCHHHHHHHHHHHHHHc-cchhc
Confidence 45888999 999999999999999999 57765
No 66
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.29 E-value=0.0083 Score=33.07 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=15.2
Q ss_pred CCCCCCCCCHHHHHHHhc
Q 048053 57 PDIKHGNYTKEEETKRKR 74 (75)
Q Consensus 57 ~~~~~~~wt~eEd~~L~~ 74 (75)
+.+.+++||.+||.+|++
T Consensus 14 ~~~~~~~WT~eEd~~L~~ 31 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLEL 31 (73)
T ss_dssp TTCSSCCCCHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHH
Confidence 456788999999999975
No 67
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=95.27 E-value=0.0087 Score=33.36 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=14.7
Q ss_pred CCCCCCCCHHHHHHHhcC
Q 048053 58 DIKHGNYTKEEETKRKRL 75 (75)
Q Consensus 58 ~~~~~~wt~eEd~~L~~l 75 (75)
...+++||.+||.+|+++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~ 32 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEA 32 (79)
T ss_dssp SCCSCCCCHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHH
Confidence 345789999999999863
No 68
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=94.89 E-value=0.016 Score=34.08 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=15.6
Q ss_pred CCCCCCCCCCHHHHHHHhc
Q 048053 56 RPDIKHGNYTKEEETKRKR 74 (75)
Q Consensus 56 ~~~~~~~~wt~eEd~~L~~ 74 (75)
.+..++++||.|||+.|++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~ 26 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQ 26 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHH
Confidence 3567789999999999975
No 69
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=94.75 E-value=0.024 Score=34.16 Aligned_cols=29 Identities=17% Similarity=0.038 Sum_probs=25.6
Q ss_pred CCCCCccCCCCHHH-HHHHHHHHHHhCCCC
Q 048053 8 DGRGMKKGAWSKEE-DDKLRAYILKYGHWN 36 (75)
Q Consensus 8 ~~~~~~k~~Wt~eE-D~~L~~~v~~~g~~~ 36 (75)
.+|.+++|.|+++| +.+|+++...+|...
T Consensus 86 ~~p~~kr~~~~p~e~~~~v~~~h~~~g~~~ 115 (122)
T 2roh_A 86 IAPQQRRGAPVPQELLDRVLAAQAYWSVDS 115 (122)
T ss_dssp SCTTTCCCSSCCHHHHHHHHHHHHHHHSSC
T ss_pred CCccccCCCCCCHHHHHHHHHHHHHHhhHH
Confidence 47889999999999 999999999998643
No 70
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.42 E-value=0.083 Score=28.44 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=32.1
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCC---CccccC-------ChHHHHHHHHhh
Q 048053 11 GMKKGAWSKEEDDKLRAYILKYGHWN---WAQLPK-------SGKSCRLRWMNY 54 (75)
Q Consensus 11 ~~~k~~Wt~eED~~L~~~v~~~g~~~---W~~Iar-------t~~qcr~Rw~~~ 54 (75)
...+-.||+|.-++.+.+|...| .+ +..|.+ |..+++.+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999 44 334431 777777666554
No 71
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=94.19 E-value=0.025 Score=30.40 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHhc
Q 048053 59 IKHGNYTKEEETKRKR 74 (75)
Q Consensus 59 ~~~~~wt~eEd~~L~~ 74 (75)
-++.+||+|||+.|++
T Consensus 6 ~~r~~WT~EE~~~L~~ 21 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFH 21 (62)
T ss_dssp CCSSSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
Confidence 3678999999999985
No 72
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.63 E-value=0.12 Score=36.41 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=35.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCCcccc-----------------CChHHHHHHHHhhc
Q 048053 13 KKGAWSKEEDDKLRAYILKYGH---WNWAQLP-----------------KSGKSCRLRWMNYL 55 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----------------rt~~qcr~Rw~~~L 55 (75)
++..||.+||..|+-++.+||. ++|..|- ||+..+..|=..+|
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 4568999999999999999999 8999984 38887777766554
No 73
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=86.68 E-value=0.52 Score=29.75 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=19.4
Q ss_pred CCCccCCCCHHHHHHHH--------HHHHHhCC
Q 048053 10 RGMKKGAWSKEEDDKLR--------AYILKYGH 34 (75)
Q Consensus 10 ~~~~k~~Wt~eED~~L~--------~~v~~~g~ 34 (75)
|.-..|-||+++|+.|. .++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 45678999999999865 46777763
No 74
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=86.41 E-value=0.13 Score=37.22 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCccccC-----ChHHHHHHH
Q 048053 14 KGAWSKEEDDKLRAYILKYGHWNWAQLPK-----SGKSCRLRW 51 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~~~W~~Iar-----t~~qcr~Rw 51 (75)
...||++|..++.+++..|| .+|..|++ +-.+|-..|
T Consensus 189 ~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp -------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHh
Confidence 35899999999999999999 69999995 666776554
No 75
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=83.70 E-value=0.49 Score=29.90 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=24.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhC--CCCCcccc
Q 048053 12 MKKGAWSKEEDDKLRAYILKYG--HWNWAQLP 41 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g--~~~W~~Ia 41 (75)
-....||..|=..|+.++.+|| ...|..|+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~ 36 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIA 36 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHH
Confidence 3567899999999999999999 56899997
No 76
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=68.94 E-value=3.8 Score=27.49 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=26.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC--CCCcccc
Q 048053 13 KKGAWSKEEDDKLRAYILKYGH--WNWAQLP 41 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~--~~W~~Ia 41 (75)
.+++||..|=..|+.++.+||. ..|..|+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~ 32 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELI 32 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4789999999999999999995 5799997
No 77
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=68.09 E-value=1.9 Score=25.10 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=25.1
Q ss_pred HHHHHHHHhCC-------CCCccccC-----ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK-----SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar-----t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+...+..|..+|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46666766653 47888885 577899999998875
No 78
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=66.93 E-value=1.9 Score=24.65 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=24.3
Q ss_pred HHHHHHHHhCC-------CCCccccC----------ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK----------SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar----------t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666666542 47998884 346789999999886
No 79
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=62.32 E-value=4 Score=24.50 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCCCC
Q 048053 20 EEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPDI 59 (75)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~~~ 59 (75)
+-|.+|+.+++..|.-.+..||+ |...|+.|........+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 45888999999998889999996 99999999988766554
No 80
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=59.48 E-value=2.1 Score=25.19 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=24.2
Q ss_pred HHHHHHHHhCC-------CCCccccC---------ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46667776653 47999884 246788889888865
No 81
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=59.32 E-value=2.2 Score=25.10 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=23.6
Q ss_pred HHHHHHHHhCC-------CCCccccC---------ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666666653 37988884 346788888888865
No 82
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=57.87 E-value=3.5 Score=24.95 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC-------CCCccccC----------ChHHHHHHHHhhcCC--CCCCCCCCHHHH
Q 048053 24 KLRAYILKYGH-------WNWAQLPK----------SGKSCRLRWMNYLRP--DIKHGNYTKEEE 69 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar----------t~~qcr~Rw~~~L~~--~~~~~~wt~eEd 69 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.| ...++.=+++|-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~ 132 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 132 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 45666666653 47998884 256789999999987 333444444444
No 83
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=55.74 E-value=2.8 Score=24.71 Aligned_cols=34 Identities=26% Similarity=0.536 Sum_probs=24.7
Q ss_pred HHHHHHHHhCC-------CCCccccC----------ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK----------SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar----------t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776653 47998884 256789999999876
No 84
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=54.92 E-value=1.5 Score=24.47 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHHhCC-------CCCccccC---------ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 35555555531 46888884 256788888887754
No 85
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=54.89 E-value=2.5 Score=25.02 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC-------CCCccccC----------ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHh
Q 048053 24 KLRAYILKYGH-------WNWAQLPK----------SGKSCRLRWMNYLRPDIKHGNYTKEEETKRK 73 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar----------t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~ 73 (75)
+|..+|...|. +.|..||. .+...+..|..+|.| ....+++|-..|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~ 109 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLE 109 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHH
Confidence 34455555542 46888883 245789999999886 2236667666553
No 86
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=54.02 E-value=3.1 Score=24.22 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=24.6
Q ss_pred HHHHHHHHhCC-------CCCccccC---------ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777753 47999984 256788989888865
No 87
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=52.66 E-value=3.2 Score=23.56 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=23.6
Q ss_pred HHHHHHHHhCC-------CCCccccC---------ChHHHHHHHHhhcCC
Q 048053 24 KLRAYILKYGH-------WNWAQLPK---------SGKSCRLRWMNYLRP 57 (75)
Q Consensus 24 ~L~~~v~~~g~-------~~W~~Iar---------t~~qcr~Rw~~~L~~ 57 (75)
+|..+|...|. +.|..||+ .+.+.+..|.++|.|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46666666653 37988884 246788888888764
No 88
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=42.95 E-value=17 Score=16.15 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=7.6
Q ss_pred CCHHHHHHHH
Q 048053 17 WSKEEDDKLR 26 (75)
Q Consensus 17 Wt~eED~~L~ 26 (75)
||++|-+..+
T Consensus 1 ~s~~eRq~~L 10 (28)
T 3h8k_B 1 WSADERQRML 10 (28)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 8888887754
No 89
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=38.68 E-value=25 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCCCC
Q 048053 19 KEEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPDI 59 (75)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~~~ 59 (75)
.+-|.+|+.+++..|...+..||+ +...|+.|........+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 356778888888888788999996 99999999988766544
No 90
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=38.50 E-value=3 Score=24.63 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=21.1
Q ss_pred HHHHHHHhCC-------CCCccccC-----ChHHHHHHHHhhcCC
Q 048053 25 LRAYILKYGH-------WNWAQLPK-----SGKSCRLRWMNYLRP 57 (75)
Q Consensus 25 L~~~v~~~g~-------~~W~~Iar-----t~~qcr~Rw~~~L~~ 57 (75)
|..+|...|. +.|..||+ .+...+..|.++|.|
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 5555555442 25777774 467788888888765
No 91
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=35.38 E-value=44 Score=23.43 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCccccC
Q 048053 15 GAWSKEEDDKLRAYILKYGHWNWAQLPK 42 (75)
Q Consensus 15 ~~Wt~eED~~L~~~v~~~g~~~W~~Iar 42 (75)
+.||.-+=..++.++.+||..+-..||.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ 151 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIAR 151 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHH
Confidence 3577777778888888888777777763
No 92
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=30.57 E-value=47 Score=15.81 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=18.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC
Q 048053 14 KGAWSKEEDDKLRAYILKYGH 34 (75)
Q Consensus 14 k~~Wt~eED~~L~~~v~~~g~ 34 (75)
.-..|++|-+.|...+...|.
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHTC
T ss_pred EEEECHHHHHHHHHHHHHhCC
Confidence 446899999999999999984
No 93
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=30.18 E-value=36 Score=16.73 Aligned_cols=18 Identities=28% Similarity=0.684 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 048053 16 AWSKEEDDKLRAYILKYG 33 (75)
Q Consensus 16 ~Wt~eED~~L~~~v~~~g 33 (75)
.||.|=+.+|.+.|..|.
T Consensus 3 qwseeverklkefvrrhq 20 (52)
T 1y66_A 3 QWSEEVERKLKEFVRRHQ 20 (52)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 699999999999998875
No 94
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=27.25 E-value=49 Score=18.99 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCC
Q 048053 20 EEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRP 57 (75)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~ 57 (75)
+-|..|+.+++..|...+..||+ +...|+.|.......
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45677888888888788999996 888888888765443
No 95
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.86 E-value=1e+02 Score=18.03 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=34.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCccc-cC-ChHHHHHHHHhhcCC
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQL-PK-SGKSCRLRWMNYLRP 57 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~I-ar-t~~qcr~Rw~~~L~~ 57 (75)
.+.-|..++|..|..+-..+. +.+..= .+ .+..|+.|++..|+.
T Consensus 43 ~r~~~~~~~D~~iFkaWA~~~-Gk~~~g~d~~d~~~wK~nfRcALn~ 88 (121)
T 2dll_A 43 GKQDYNREEDAALFKAWALFK-GKFREGIDKPDPPTWKTRLRCALNK 88 (121)
T ss_dssp CCSSSCHHHHTHHHHHHHHHH-SCCCBTTBCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCcchhhHHHHHHHHHc-CCCcCCCCCCCHHHHHHHHHHHhcc
Confidence 456678899999999998886 567543 22 888999999998865
No 96
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=26.37 E-value=62 Score=19.61 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=23.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCcccc
Q 048053 13 KKGAWSKEEDDKLRAYILKYGHWNWAQLP 41 (75)
Q Consensus 13 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia 41 (75)
.||.|+.+.-.+.+.+.++|..-+...|.
T Consensus 55 vKG~~~~~dR~K~k~ikeq~P~ldirfvf 83 (138)
T 1m0d_A 55 TKGLWESDDRKKHLLIREQHPELDIRIVF 83 (138)
T ss_dssp EESSCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ecccCCHHHHHHHHHHHHHCCCceEEEEE
Confidence 48999999999999999999865655554
No 97
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.35 E-value=41 Score=19.43 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCCC
Q 048053 20 EEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPD 58 (75)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~~ 58 (75)
+-|..|+.++...|...+..||+ +...|+.|.......+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 44677888888888788999996 8888998887765543
No 98
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=24.52 E-value=42 Score=20.16 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCCC
Q 048053 19 KEEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPD 58 (75)
Q Consensus 19 ~eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~~ 58 (75)
.+-|..|+.+++..|...+..||+ +...|+.|........
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345678888888888778889986 8888999887765443
No 99
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=24.09 E-value=60 Score=14.56 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=12.6
Q ss_pred HHHHHHHHh-hcCCCCC
Q 048053 45 KSCRLRWMN-YLRPDIK 60 (75)
Q Consensus 45 ~qcr~Rw~~-~L~~~~~ 60 (75)
+.|--||.. .|+|+++
T Consensus 3 kecllrykeaaldpnln 19 (34)
T 3s1b_A 3 KECLLRYKEAALDPNLN 19 (34)
T ss_dssp HHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhcCCChh
Confidence 578889987 6888775
No 100
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=22.82 E-value=57 Score=19.04 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcCCC
Q 048053 20 EEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPD 58 (75)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~~~ 58 (75)
+-|..|+.++...|......||+ +...|+.|........
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45667888888888778888886 8888888887665443
No 101
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.09 E-value=77 Score=18.87 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.1
Q ss_pred ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHh
Q 048053 43 SGKSCRLRWMNYLRPDIKHGNYTKEEETKRK 73 (75)
Q Consensus 43 t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~ 73 (75)
|+.+||.-|+ | ...+|+||++.|.
T Consensus 129 t~eeir~~f~------I-~nd~t~eEe~~ir 152 (160)
T 2p1m_A 129 TPEEIRTTFN------I-KNDFTPEEEEEVR 152 (160)
T ss_dssp CHHHHHHHTT------C-CCCCCHHHHHHHH
T ss_pred CHHHHHHHcC------C-CCCCCHHHHHHHH
Confidence 8888888773 2 2369999998764
No 102
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.86 E-value=59 Score=18.72 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCCccccC----ChHHHHHHHHhhcC
Q 048053 20 EEDDKLRAYILKYGHWNWAQLPK----SGKSCRLRWMNYLR 56 (75)
Q Consensus 20 eED~~L~~~v~~~g~~~W~~Iar----t~~qcr~Rw~~~L~ 56 (75)
+-|..|+.++...|......||+ +...|+.|......
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34677888888888778888886 88888888766543
No 103
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=21.86 E-value=34 Score=19.59 Aligned_cols=32 Identities=3% Similarity=-0.250 Sum_probs=23.8
Q ss_pred ChHHHHHHHHhhcCCCCCCCCCCHHHHHHHhc
Q 048053 43 SGKSCRLRWMNYLRPDIKHGNYTKEEETKRKR 74 (75)
Q Consensus 43 t~~qcr~Rw~~~L~~~~~~~~wt~eEd~~L~~ 74 (75)
|..++...+.+.|+.-......+++|...|+.
T Consensus 16 s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~ 47 (104)
T 2k0m_A 16 RKADALAFMKVMLNRYRPGDIVSTVDGAFLVE 47 (104)
T ss_dssp SHHHHHHHHHHHHHHSCTTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 77889999999988655556788886666554
No 104
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=21.16 E-value=1.3e+02 Score=17.34 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=34.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCCccc--cCChHHHHHHHHhhcCC
Q 048053 12 MKKGAWSKEEDDKLRAYILKYGHWNWAQL--PKSGKSCRLRWMNYLRP 57 (75)
Q Consensus 12 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~I--art~~qcr~Rw~~~L~~ 57 (75)
..+.-|..|+|..|..+-..+. +++..= ...+..++.+++..|+.
T Consensus 41 a~r~~~~~e~D~~IFkaWA~~~-Gk~~~g~d~~dp~~WK~nfRcALn~ 87 (113)
T 2irf_G 41 AARHGWDVEKDAPLFRNWAIHT-GKHQPGIDKPDPKTWKANFRCAMNS 87 (113)
T ss_dssp TTSTTCCHHHHSHHHHHHHHHT-TSCCTTTSCCCHHHHHHHHHHHHHH
T ss_pred CCcCCccccchhHHHHHHHHHh-CCCCCCCCCCChhHHHHHHHHHhcc
Confidence 3466788999999999999997 677542 23777888888887764
Done!