Query 048056
Match_columns 143
No_of_seqs 117 out of 687
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls3_A High affinity copper up 98.8 1.4E-12 5E-17 72.3 0.0 28 78-105 1-28 (29)
2 2ls4_A High affinity copper up 98.0 4.4E-09 1.5E-13 56.8 0.0 24 103-126 1-24 (26)
3 2ls2_A High affinity copper up 97.2 1.2E-06 4.1E-11 47.2 0.0 25 41-65 2-26 (26)
4 3gia_A Uncharacterized protein 50.7 79 0.0027 25.1 8.4 25 104-128 401-425 (444)
5 4djk_A Probable glutamate/gamm 33.4 1.5E+02 0.0051 23.9 7.5 25 102-126 444-468 (511)
6 3ukw_C Bimax1 peptide; arm rep 32.4 11 0.00037 19.6 0.2 18 126-143 7-24 (28)
7 3l1l_A Arginine/agmatine antip 31.8 1.9E+02 0.0064 22.8 8.2 19 106-124 410-428 (445)
8 2vv5_A MSCS, small-conductance 30.8 1.6E+02 0.0056 22.7 7.0 84 36-119 21-109 (286)
9 2jwa_A Receptor tyrosine-prote 30.1 38 0.0013 19.7 2.4 19 106-124 20-38 (44)
10 1iij_A ERBB-2 receptor protein 23.2 34 0.0012 19.0 1.3 16 106-121 16-31 (35)
11 2i68_A Protein EMRE; transmemb 22.2 2E+02 0.007 20.0 7.6 41 85-125 35-82 (137)
No 1
>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.83 E-value=1.4e-12 Score=72.34 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048056 78 AGLFKTGLHGVRVGLAYMVVLAVMSFNG 105 (143)
Q Consensus 78 ~~l~~s~l~~~q~~l~YlLMLivMTyN~ 105 (143)
.|++|+++|++|+++||+|||++||||+
T Consensus 1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~ 28 (29)
T 2ls3_A 1 KHLLQTVLHIIQVVISYFLMLIFMTYNK 28 (29)
Confidence 4789999999999999999999999997
No 2
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=98.04 E-value=4.4e-09 Score=56.76 Aligned_cols=24 Identities=38% Similarity=0.722 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhccee
Q 048056 103 FNGGIFIAAVVGHAVGYLLFGSRV 126 (143)
Q Consensus 103 yN~~l~laVvlG~~iGy~~F~~~~ 126 (143)
||+|+++||++|+++||++|+++.
T Consensus 1 YNg~l~iavvlGa~~Gyf~F~~~~ 24 (26)
T 2ls4_A 1 YNGYLCIAVAAGAGTGYFLFSWKK 24 (26)
Confidence 899999999999999999999874
No 3
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=97.18 E-value=1.2e-06 Score=47.17 Aligned_cols=25 Identities=36% Similarity=0.370 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHh
Q 048056 41 SSTGMYVLALVFVFSLAVIVEWLSH 65 (143)
Q Consensus 41 ~t~~~~~~sci~vf~lavl~e~l~~ 65 (143)
+|.+++++||+++|+++++||++|.
T Consensus 2 ~s~~~~v~Sci~ifll~~~YE~Lk~ 26 (26)
T 2ls2_A 2 NTAGEMAGAFVAVFLLAMFYEGLKX 26 (26)
Confidence 5778999999999999999999983
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=50.71 E-value=79 Score=25.10 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcceeec
Q 048056 104 NGGIFIAAVVGHAVGYLLFGSRVRM 128 (143)
Q Consensus 104 N~~l~laVvlG~~iGy~~F~~~~~~ 128 (143)
+.++.+.+.++..+.+.+..++..+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (444)
T 3gia_A 401 VFYGIIATFIGVLIFEIIYRKVTKR 425 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3446666777777777777554433
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=33.44 E-value=1.5e+02 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=15.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhccee
Q 048056 102 SFNGGIFIAAVVGHAVGYLLFGSRV 126 (143)
Q Consensus 102 TyN~~l~laVvlG~~iGy~~F~~~~ 126 (143)
.|...++..+++...+.+++...+.
T Consensus 444 ~~~~~~~~~~~~~~~i~~~~~~~~~ 468 (511)
T 4djk_A 444 MYVELLVVSFLVVLALPFILYAVHD 468 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566777777777777754433
No 6
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=32.41 E-value=11 Score=19.55 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=13.5
Q ss_pred eeccccccCcchhhhhcC
Q 048056 126 VRMLVTKLGMREEEKRKR 143 (143)
Q Consensus 126 ~~~~~~~~~~~e~~~~~~ 143 (143)
-++.+-.+|..||.-|||
T Consensus 7 prkrplewdedeepprkr 24 (28)
T 3ukw_C 7 PRKRPLEWDEDEEPPRKR 24 (28)
T ss_dssp CCCCCCCCCGGGSCCSSC
T ss_pred cccCCcccccccCcchhh
Confidence 356778888888887765
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.83 E-value=1.9e+02 Score=22.79 Aligned_cols=19 Identities=0% Similarity=-0.104 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 048056 106 GIFIAAVVGHAVGYLLFGS 124 (143)
Q Consensus 106 ~l~laVvlG~~iGy~~F~~ 124 (143)
.+...+++..++-.+.+.+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~ 428 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNY 428 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444433
No 8
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=30.80 E-value=1.6e+02 Score=22.70 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=37.2
Q ss_pred cCcccCChhHHHHHHHHHHHHHHHHHHHHhh-hhc--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHH
Q 048056 36 SGWPGSSTGMYVLALVFVFSLAVIVEWLSHY-NIV--KPGASRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGI--FIA 110 (143)
Q Consensus 36 ~~W~~~t~~~~~~sci~vf~lavl~e~l~~~-r~~--~p~~~~~~~~l~~s~l~~~q~~l~YlLMLivMTyN~~l--~la 110 (143)
..|-++.....+.+++++++.-++.+.++.+ ++. +.+.+....++++.++..+-..++.++.|-..-.|..- ..+
T Consensus 21 ~~~~~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~ 100 (286)
T 2vv5_A 21 QALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVL 100 (286)
T ss_dssp ----CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3344444455666665555444455544422 111 11222333445555555555555555555555555432 333
Q ss_pred HHHHHHHHH
Q 048056 111 AVVGHAVGY 119 (143)
Q Consensus 111 VvlG~~iGy 119 (143)
-++|.++|.
T Consensus 101 g~~g~aig~ 109 (286)
T 2vv5_A 101 GAAGLVVGL 109 (286)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555554
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=30.13 E-value=38 Score=19.67 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 048056 106 GIFIAAVVGHAVGYLLFGS 124 (143)
Q Consensus 106 ~l~laVvlG~~iGy~~F~~ 124 (143)
++++.+++|..++.++=.+
T Consensus 20 Gvll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 20 GILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheehh
Confidence 4667788888777766444
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.23 E-value=34 Score=18.95 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 048056 106 GIFIAAVVGHAVGYLL 121 (143)
Q Consensus 106 ~l~laVvlG~~iGy~~ 121 (143)
++++.+++|..+|.++
T Consensus 16 glll~vii~l~~~~~i 31 (35)
T 1iij_A 16 GVLLFLILVVVVGILI 31 (35)
T ss_dssp HHHHHHHHTTTTTHHH
T ss_pred HHHHHHHHHHHhheEE
Confidence 3778888888888765
No 11
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=22.16 E-value=2e+02 Score=19.95 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhhcce
Q 048056 85 LHGVRVGLAYMVVLAVM-------SFNGGIFIAAVVGHAVGYLLFGSR 125 (143)
Q Consensus 85 l~~~q~~l~YlLMLivM-------TyN~~l~laVvlG~~iGy~~F~~~ 125 (143)
+-.+-..++|++...++ .|..|..+..++...+|.++|+..
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ 82 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33344444555444444 334444455555555555555544
Done!