Query 048056
Match_columns 143
No_of_seqs 117 out of 687
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 09:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048056.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048056hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 22.7 45 0.0033 17.2 3.0 20 43-62 14-33 (37)
2 d2axti1 f.23.37.1 (I:1-35) Pho 14.9 34 0.0025 17.5 1.3 17 109-125 8-24 (35)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 14.5 1.1E+02 0.0081 21.8 4.8 44 82-125 5-48 (248)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 12.8 45 0.0033 16.2 1.4 13 47-59 9-22 (30)
5 d3b60a2 f.37.1.1 (A:10-328) Mu 11.6 62 0.0045 21.6 2.4 24 83-106 133-156 (319)
6 d1otsa_ f.20.1.1 (A:) Clc chlo 11.4 65 0.0047 24.5 2.7 30 92-121 390-419 (444)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 10.7 1E+02 0.0074 14.9 2.4 13 107-119 10-22 (32)
8 d2axth1 f.23.33.1 (H:2-65) Pho 10.3 79 0.0057 18.2 2.1 27 34-61 20-46 (64)
9 d2vv5a3 f.34.1.1 (A:27-112) Me 9.1 1.8E+02 0.013 16.5 7.2 46 74-119 36-83 (86)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 6.6 1.7E+02 0.012 17.4 2.7 22 108-129 38-59 (100)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.74 E-value=45 Score=17.16 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 048056 43 TGMYVLALVFVFSLAVIVEW 62 (143)
Q Consensus 43 ~~~~~~sci~vf~lavl~e~ 62 (143)
.....+.++.+|++|++...
T Consensus 14 rtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34567778888999988653
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.86 E-value=34 Score=17.53 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhcce
Q 048056 109 IAAVVGHAVGYLLFGSR 125 (143)
Q Consensus 109 laVvlG~~iGy~~F~~~ 125 (143)
.-+++-..++-|+||..
T Consensus 8 Vy~vV~fFv~lFiFGFL 24 (35)
T d2axti1 8 VYIVVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 33455556667777764
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=14.46 E-value=1.1e+02 Score=21.80 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcce
Q 048056 82 KTGLHGVRVGLAYMVVLAVMSFNGGIFIAAVVGHAVGYLLFGSR 125 (143)
Q Consensus 82 ~s~l~~~q~~l~YlLMLivMTyN~~l~laVvlG~~iGy~~F~~~ 125 (143)
..++-.+..+..|.+.++..-=+.++.+.+++-.+++.++|.++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~ 48 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANR 48 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEcc
Confidence 46777888888888888777777776666666666666666554
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.80 E-value=45 Score=16.18 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=6.5
Q ss_pred HHHH-HHHHHHHHH
Q 048056 47 VLAL-VFVFSLAVI 59 (143)
Q Consensus 47 ~~sc-i~vf~lavl 59 (143)
.++| +++|++|++
T Consensus 9 ifac~i~lfffaif 22 (30)
T d2axtt1 9 IFACIIALFFFAIF 22 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 3444 345555554
No 5
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=11.60 E-value=62 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 048056 83 TGLHGVRVGLAYMVVLAVMSFNGG 106 (143)
Q Consensus 83 s~l~~~q~~l~YlLMLivMTyN~~ 106 (143)
.....++..+..+..++.|.+--+
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 133 ALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhhhhhhHHHHHHhhhc
Confidence 333344444444444555544433
No 6
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=11.44 E-value=65 Score=24.52 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 048056 92 LAYMVVLAVMSFNGGIFIAAVVGHAVGYLL 121 (143)
Q Consensus 92 l~YlLMLivMTyN~~l~laVvlG~~iGy~~ 121 (143)
++=.++.+=||-+..+++.+++...++|.+
T Consensus 390 lta~vl~~Eltg~~~~~~p~~ia~~~a~~v 419 (444)
T d1otsa_ 390 LTGIILVLEMTDNYQLILPMIITGLGATLL 419 (444)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 444566666777765555555555555554
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.67 E-value=1e+02 Score=14.94 Aligned_cols=13 Identities=54% Similarity=0.810 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 048056 107 IFIAAVVGHAVGY 119 (143)
Q Consensus 107 l~laVvlG~~iGy 119 (143)
+|+|...|.++|-
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4556666666664
No 8
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.25 E-value=79 Score=18.23 Aligned_cols=27 Identities=30% Similarity=0.588 Sum_probs=17.1
Q ss_pred eecCcccCChhHHHHHHHHHHHHHHHHH
Q 048056 34 LFSGWPGSSTGMYVLALVFVFSLAVIVE 61 (143)
Q Consensus 34 LF~~W~~~t~~~~~~sci~vf~lavl~e 61 (143)
.-++|-++-.-..+.+++.+|++ ++.|
T Consensus 20 VaPGWGTTplMgv~m~Lf~vfl~-iiLe 46 (64)
T d2axth1 20 VAPGWGTTPLMAVFMGLFLVFLL-IILE 46 (64)
T ss_dssp CCSTTTTHHHHHHHHHHHHHHHH-HHHH
T ss_pred ccCCcCccHHHHHHHHHHHHHHH-HHHH
Confidence 34788877766777777766544 4444
No 9
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.12 E-value=1.8e+02 Score=16.48 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHH
Q 048056 74 SRVAAGLFKTGLHGVRVGLAYMVVLAVMSFNGGIFIAA--VVGHAVGY 119 (143)
Q Consensus 74 ~~~~~~l~~s~l~~~q~~l~YlLMLivMTyN~~l~laV--vlG~~iGy 119 (143)
++...+++..+.+.+-..++.+..|-.+-.|..-+++. ++|.++|+
T Consensus 36 ~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 36 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34455666666666666677777777777777644443 44555554
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.58 E-value=1.7e+02 Score=17.38 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhcceeecc
Q 048056 108 FIAAVVGHAVGYLLFGSRVRML 129 (143)
Q Consensus 108 ~laVvlG~~iGy~~F~~~~~~~ 129 (143)
++.+++...+-|+++..+.++.
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHhhhhhccCC
Confidence 3444555666677776665443
Done!