RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 048058
         (157 letters)



>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 246

 Score =  105 bits (263), Expect = 2e-29
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 9   ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSA 68
            T+  L+G+        V LPDV +  +R D++G        N +Q Y     AG +T A
Sbjct: 3   ATIYDLDGN----TDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPA 58

Query: 69  ESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAI 128
           ES+G+GR  + +P++ G                 GR   P K  +     +N  +++ A+
Sbjct: 59  ESFGSGRGQAHVPKLDGRARRV-------PQAVKGRSAHPPKTEKDRSLDLNDKERQLAV 111

Query: 129 VSAIAASAVPSLVMARGHKIETVPEMPLV 157
            SA+AA+A   LV  RGH+     E+P+V
Sbjct: 112 RSALAATADADLVADRGHEF-DRDEVPVV 139


>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 225

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 16/144 (11%)

Query: 9   ITVQSLEGDMATDASSTVPLPD-VMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTS 67
           + + +++G+       T+ + D V       D++         N R        A  +T 
Sbjct: 3   VDLLNVKGE----KVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGT-----ASTKTR 53

Query: 68  AESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYA 127
            E  G GR   +       G  R G         GG +  P    R W +K+N   K+ A
Sbjct: 54  GEVSGGGR---KPWPQKHTGRARHGSIRSPIWRHGGVVHGPKP--RDWSKKLNKKMKKLA 108

Query: 128 IVSAIAASAVPS-LVMARGHKIET 150
           + SA++     + L++    K+E 
Sbjct: 109 LRSALSVKYRENKLLVLDDLKLER 132


>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
           thermophilus [TaxId: 274]}
          Length = 208

 Score = 48.3 bits (114), Expect = 4e-08
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 21  DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRI 80
             S    L   + A I P ++  V        R+       A  +T  E   +GR   +I
Sbjct: 13  SPSGRRELAADLPAEINPHLLWEVVRWQLAKRRRGT-----ASTKTRGEVAYSGR---KI 64

Query: 81  PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAIVSAIAASAVPSL 140
                 G  R G         GG +F P    R +   +    ++  +  A+A  A    
Sbjct: 65  WPQKHTGRARHGDIGAPIFVGGGVVFGPKP--RDYSYTLPKKVRKKGLAMAVADRAREGK 122

Query: 141 VM 142
           ++
Sbjct: 123 LL 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.393 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 556,843
Number of extensions: 22592
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 6
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)