BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048059
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/176 (63%), Positives = 138/176 (78%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F+IWDTAGQERYHSLAPMYYRG +D++N +F RA K VQELQ QGN +VMAL
Sbjct: 63 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 122
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
A NKSDL R+V E+ + ++QENG+F++ETSAKTA N+ E+FYEIA+RL RV P
Sbjct: 123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 210 bits (535), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/177 (55%), Positives = 128/177 (72%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
+KI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 3 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N +TF RA V+ELQRQ + +V+ALA NK
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
+DL ++R V EE + ++ +N + ++ETSAKTA N+N+LF IAK+L + P G
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGG 179
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/164 (59%), Positives = 123/164 (75%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
I Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IWDTA
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQERYHSLAPMYYRG YDI+N DTF RA V+ELQRQ + +V+ALA NK+DL
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
S+R V +E + ++ +N + ++ETSAKTA N+NE+F IAK+L
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 206 bits (525), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 206 bits (525), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/164 (58%), Positives = 122/164 (74%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
I Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IWDTA
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
G ERYHSLAPMYYRG YDI+N DTF RA V+ELQRQ + +V+ALA NK+DL
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
S+R V +E + ++ +N + ++ETSAKTA N+NE+F IAK+L
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1 GNKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/164 (58%), Positives = 122/164 (74%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
I Q KLVLLG+ GK+SL LRF+KGQF++ QE TI AAF TQ + L + TVKF+IWDTA
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQERYHSLAPMYYRG YDI+N DTF RA V+ELQRQ + +V+ALA NK+DL
Sbjct: 63 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
S+R V +E + ++ +N + ++ETSAKTA N+NE+F IAK+L
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1 GNKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1 GNKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1 GNKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/169 (56%), Positives = 127/169 (75%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 1 GNKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 202 bits (514), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 125/169 (73%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 2 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAP YYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 121
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+DL ++R V +E + ++ +N + + ETSAKT+ N+NE+F IAK+L +
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 125/168 (74%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
NKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IWD
Sbjct: 1 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
TAG ERYHSLAPMYYRG YDI+N ++F RA V+ELQRQ + +V+AL+ NK+
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L +
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 109/172 (63%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G+ I + K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IW
Sbjct: 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIW 77
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+HSLAPMYYRG YDI+ D+F K V+EL+ G + +VMA+A NK
Sbjct: 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
DL REVP ++ +++++ G +ETSAK A NI ELF I++++ + P
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 112/167 (67%), Gaps = 3/167 (1%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
+ KLVLLG+ GK+S+ LRF+ F + +EPTIGAAF TQ ++++E TVKF+IWDTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQER+ SLAP YYR YD++ +F +A V+EL Q ++ +++AL NK D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120
Query: 128 ---DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+R+V EEGE+ ++E G+ + ETSAKT +N+N++F I +++
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 101/162 (62%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IWDTAGQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
ER+ +LAPMYYRG YDI+ +TF+ V+EL++ G +V+A+A NK DL
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
REV + + ++ ++ETSAK A NINELF EI++R+
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 103/167 (61%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G+ + + K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IW
Sbjct: 1 GSALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAG ER+ +LAPMYYRG YDI+ +TF+ V+EL++ G +V+A+A NK
Sbjct: 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
DL REV + + ++ ++ETSAK A NINELF EI++R+
Sbjct: 121 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 99/160 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 71
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRG YDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 72 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 132 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 101/167 (60%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G++ K+VLLG+ GKTSL LR+ + +F D+ T+GA+F T+ L++ V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+H+L P+YYR YDI++ D+F + V+EL++ + + + NK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
DL+ +R V +E E +++ G + TSAK + I ELF ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 103/167 (61%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +W
Sbjct: 9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 68
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+ SL P Y R YDI+N ++F++ +K + +++ + V++ L NK
Sbjct: 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+DL +R+V TEEGE+ ++E + +IETSAK N+ +LF +A L
Sbjct: 129 TDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +WDTAGQER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ SL P Y R YDI+N+++F + +K + +++ + V++ L NK+DL +R
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKR 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ EEGEQ ++E + +IETSAKT N+ +LF +A L
Sbjct: 124 QITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 100/162 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 82
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRG YDI+ +TFN +++ ++ + +V+ L NKSDL+S+R
Sbjct: 83 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 142
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+V EEGE F++E+G+ ++ETSAKTA N+ E F AK + R
Sbjct: 143 DVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 100/167 (59%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G++ K+VLLG+ GKTSL LR+ + +F D+ T+ A+F T+ L++ V IW
Sbjct: 15 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 74
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+H+L P+YYR YDI++ D+F + V+EL++ + + + NK
Sbjct: 75 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
DL+ +R V +E E +++ G + TSAK + I ELF ++ KR+
Sbjct: 135 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 100/167 (59%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G++ K+VLLG+ GKTSL LR+ + +F D+ T+ A+F T+ L++ V IW
Sbjct: 1 GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+H+L P+YYR YDI++ D+F + V+EL++ + + + NK
Sbjct: 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
DL+ +R V +E E +++ G + TSAK + I ELF ++ KR+
Sbjct: 121 IDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 99/160 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GDMG GK+ L +F + +F TIG F T+I+ +S +K IWDTAGQER
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YDI+ T+N + + + + N V+ L NK+DL++QR
Sbjct: 77 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 136
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+V EE +QF++ENG+ ++E SAKT +N+ + F E AK++
Sbjct: 137 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF K +F + TIG F T+ L + +K IWDTAGQER
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDIS ++ N + EL+ + V + L NKSDL R
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR 134
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
VPTEE + F+QEN + + ETSA ++N+++ F E+
Sbjct: 135 AVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + D TIG F + +SL TVK IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ D+F+ + +QE+ R + V L NK DL S+R
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKR 130
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
V ++EG + + +G+ +IETSAK A N+ + F+ EI KR+
Sbjct: 131 VVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 8/201 (3%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +W
Sbjct: 11 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 70
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAG ER+ SL P Y R YDI+N+++F + K + +++ + V++ L NK
Sbjct: 71 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 130
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV-SPPKRSG-- 181
+DL +R+V EEGE+ ++E + +IETSAK N+ +LF +A L + S RS
Sbjct: 131 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 190
Query: 182 -INLNPETPERK----GFCCL 197
I++ E P+ + G C L
Sbjct: 191 MIDIKLEKPQEQPVSEGGCLL 211
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 9/202 (4%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + T++ +W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAG ER+ SL P Y R YDI+N+++F + K + +++ + V++ L NK
Sbjct: 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV-SPPKRSG-- 181
+DL +R+V EEGE+ ++E + +IETSAK N+ +LF +A L + S RS
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRED 187
Query: 182 -INLNPETPERK-----GFCCL 197
I++ E P+ + G CL
Sbjct: 188 MIDIKLEKPQEQPVSEGGCSCL 209
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 98/160 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GDMG GK+ L +F + +F TIG F T+I+ +S +K IWDTAGQ R
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGR 91
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YDI+ T+N + + + + N V+ L NK+DL++QR
Sbjct: 92 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR 151
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+V EE +QF++ENG+ ++E SAKT +N+ + F E AK++
Sbjct: 152 DVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 101/167 (60%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G+ + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + T++ +W
Sbjct: 1 GSPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+ SL P Y R YDI+N+++F + K + +++ + V++ L NK
Sbjct: 61 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+DL +R+V EEGE+ ++E + +IETSAK N+ +LF +A L
Sbjct: 121 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 100/167 (59%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +W
Sbjct: 1 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAG ER+ SL P Y R YDI+N+++F + K + +++ + V++ L NK
Sbjct: 61 DTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+DL +R+V EEGE+ ++E + +IETSAK N+ +LF +A L
Sbjct: 121 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 97/160 (60%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +WDTAGQER
Sbjct: 3 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ SL P Y R YDI+N+++F + K + +++ + V++ L NK+DL +R
Sbjct: 63 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 122
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+V EEGE+ ++E + +IETSAK N+ +LF +A L
Sbjct: 123 QVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 99/160 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++G+ GTGK+ L +FI+ +F D TIG F ++I+++ VK IWDTAGQER
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRG YDI++ +T+N + + + +Q +V+ L NK DLD+ R
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV E +F+QEN + ++ETSA T +N+ E F + A+++
Sbjct: 132 EVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 97/168 (57%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF + +F + + TIG F T+ + + T+K IWDTAGQER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y + YYRG YDI+ T+ + ++EL+ + +V+ L NKSDL R
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 126
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR 179
VPT+E F+++N + +IETSA + N+ E F I + R+ K+
Sbjct: 127 AVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 96/163 (58%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF + +F + + TIG F T+ + + T+K IWDTAGQER
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+ T+ + ++EL+ + +V+ L NKSDL R
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 141
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
VPT+E F+++NG+ +IETSA + N+ F I + R+
Sbjct: 142 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+G+ G GKT+L RF + +F TIG F T+ + L A VK IWDTAG ER
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG +D++ T+ + ++EL +V+ L NKSDL R
Sbjct: 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 146
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVS 175
EVPTEE F++ NG+ ++ETSA + N+ F + K + A+VS
Sbjct: 147 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 1/166 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+G+ G GKT+L RF + +F TIG F T+ + L A VK IWDTAG ER
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG +D++ T+ + ++EL +V+ L NKSDL R
Sbjct: 72 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSP 176
EVPTEE F++ NG+ ++ETSA + N+ F + K + A+VS
Sbjct: 132 EVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 129 bits (324), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 99/160 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++G+ GTGK+ L +FI+ +F D TIG F ++I+++ VK IWDTAGQER
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRG YDI++ +T+N + + + +Q +V+ L NK DLD+ R
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 132
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV E +F+QEN + ++ETSA T +++ E F + A+++
Sbjct: 133 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 93/156 (59%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF + +F + + TIG F T+ + + T+K IWDTAGQER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+ T+ + ++EL+ + +V+ L NKSDL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
VPT+E F+++NG+ +IETSA + N+ F I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 95/160 (59%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+G+ G GKT L RF +G F Q TIG F + + ++ VK IWDTAGQER
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYR YDI+ ++F + ++E+++ + V+ L NK DL +R
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR 147
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV + E+FS+ M+Y+ETSAK + N+ +LF ++A RL
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 95/163 (58%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF + +F + + TIG F T+ + + T+K IWDTAG ER
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+ T+ + ++EL+ + +V+ L NKSDL R
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
VPT+E F+++NG+ +IETSA + N+ F I + R+
Sbjct: 130 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 40/199 (20%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE--------------- 56
K VLLG+ GK+S+ LR K F++ TIGA+F T +++L++
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 57 ----------------------ATVKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISN 94
+KFDIWDTAGQERY S+ P+YYRG +DISN
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 95 MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA 154
+T +RA V +L+ N I++ L ANK D ++ +V E ++++Q+N + +I+TSA
Sbjct: 129 SNTLDRAKTWVNQLKISSNYIII--LVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 155 KTAQNINELFYEIAKRLAR 173
KT NI +FY +A+ + +
Sbjct: 186 KTGTNIKNIFYMLAEEIYK 204
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 90/160 (56%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV LG+ GKTS+ RF F + + TIG F ++ L L E V+ +WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ SL P Y R YDI+N +F K +Q++ + + V++AL NK+DL R
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLR 122
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+V EEG Q +QE + ETSAK NI LF + A +L
Sbjct: 123 KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 98/160 (61%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++G+ GTGK+ L +FI+ +F D TIG F ++I+++ VK IWDTAG ER
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRG YDI++ +T+N + + + +Q +V+ L NK DLD+ R
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV E +F+QEN + ++ETSA T +++ E F + A+++
Sbjct: 130 EVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 92/156 (58%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF + +F + + TIG F T+ + + T+K IWDTAG ER
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+ T+ + ++EL+ + +V+ L NKSDL R
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 150
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
VPT+E F+++NG+ +IETSA + N+ F I
Sbjct: 151 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 89/156 (57%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF +F + + TIG F T+ + + +K IWDTAG ER
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDIS ++ N + EL+ + V + L NKSDL R
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLR 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
VPT+E + F+ EN M + ETSA + N+++ F E+
Sbjct: 132 AVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 92/156 (58%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF + +F + + TIG F T+ + + T+K IWDTAG ER
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+ T+ + ++EL+ + +V+ L NKSDL R
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 126
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
VPT+E F+++NG+ +IETSA + N+ F I
Sbjct: 127 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 96/160 (60%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++G GTGK+ L +FI+ +F TIG F ++++++ TVK IWDTAGQER
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRG YDI++ +T+N + + + + +V+ L NK DLD +R
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 146
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV E +F+QEN + ++ETSA T +N+ E F + A+ +
Sbjct: 147 EVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 92/156 (58%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL+GD G GK++L RF + +F + + TIG F T+ + + T+K IWDTAG ER
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+ T+ + ++EL+ + +V+ L NKSDL R
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLR 132
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
VPT+E F+++NG+ +IETSA + N+ F I
Sbjct: 133 AVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 11/196 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+G+ G GK+ L LRF + + TIG F + + L TVK IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN +QE+ R V+ L NK DL +R
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV-----------SPPKRS 180
V + ++F+ N M ++ETSA + N+ + F +A+++ +
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKG 189
Query: 181 GINLNPETPERKGFCC 196
+NL ++ G CC
Sbjct: 190 NVNLKGQSLTNTGGCC 205
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL +++
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRSG 181
V ++F+ G+ ++ETSAK A N+ + F +A + R+ P +G
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAG 188
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 99/181 (54%), Gaps = 5/181 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+G+ G GK+ L LRF + + TIG F + + L TVK IWDTAGQER
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN +QE+ R V+ L NK DL +R
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINLNPETPER 191
V + ++F+ N M ++ETSA + N+ + F +A+++ S NLN ET ++
Sbjct: 130 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI----KESMSQQNLN-ETTQK 184
Query: 192 K 192
K
Sbjct: 185 K 185
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL +++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
V ++F+ G+ ++ETSAK A N+ + F EI KR+
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL +++
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 146
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRLA 172
V ++F+ G+ ++ETSAK A N+ + F EI KR+
Sbjct: 147 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL +++
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
V ++F+ G+ ++ETSAK A N+ + F EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL +++
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRL 171
V ++F+ G+ ++ETSAK A N+ + F EI KR+
Sbjct: 128 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++L+GD G GK+ L +RF++ +F TIG F + + ++ VK IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YDI++ TF + + + N + L NKSD+++ R
Sbjct: 65 FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-R 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
V ++GE ++E G+ +IE+SAK N+NE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 91/162 (56%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL +++
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
V ++F+ G+ ++ETSAK A N+ + F +A + +
Sbjct: 138 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 90/160 (56%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+G+ G GK+ L LRF + + TIG F + + L TVK IWDTAGQER
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN +QE+ R V+ L NK DL +R
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
V + ++F+ N M ++ETSA + N+ + F +A+++
Sbjct: 143 VVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL +++
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 154
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKR 170
V ++F+ G+ ++ETSAK A N+ + F EI KR
Sbjct: 155 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 99/172 (57%), Gaps = 2/172 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++L+GD G GK+ L +RF++ +F TIG F + + ++ VK +WDTAGQER
Sbjct: 22 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ TF + + + N + L NKSD+++ R
Sbjct: 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-R 140
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRSGI 182
V ++GE ++E G+ +IE+SAK N+NE+F+ +AK + ++ K G+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGV 192
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 1/173 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQE 70
K+VL+GD G GK++L RF + +F + + TIG F T+ + L + +K IWDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 71 RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
RY ++ YYRG YDI+ ++F K ++EL+ + +V+ L NKSDL
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGIN 183
R + + Q++++ + +IETSA A N+ F+++ + V K++ N
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++L+GD G GK+ L +RF++ +F TIG F + + ++ VK IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YDI++ TF + + + N + L NKSD ++ R
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
V ++GE ++E G+ +IE+SAK N+NE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++L+GD G GK+ L +RF++ +F TIG F + + ++ VK +WDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ TF + + + N + L NKSD+++ R
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-R 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
V ++GE ++E G+ +IE+SAK N+NE+F+ +AK +
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 167
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ +++ + +QE+ R ++ V L NKSDL +++
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRLA 172
V ++F+ G+ ++ETSAK A N+ + F EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
K++L+GD G GKT L +RF G F T+G F ++L + VK +WDTAGQE
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 71 RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
R+ S+ YYR YD++N +F+ + E+ V + L NK D +
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS 175
R V E+GE+ ++E G+ ++ETSAKT N++ F IAK L R S
Sbjct: 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 4/165 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ +++ + +QE+ R ++ V L NKSDL +++
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKK 130
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY----EIAKRLA 172
V ++F+ G+ ++ETSAK A N+ + F EI KR+
Sbjct: 131 VVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ ++FN + +QE+ R ++ V L K DL +++
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKK 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPP 177
V ++F+ G+ ++ETSAK A N+ + F +A + + P
Sbjct: 130 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGP 175
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 94/160 (58%), Gaps = 1/160 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++L+GD G GK+ L +RF++ +F TIG F + + ++ VK +WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YD+++ TF + + + N + L NKSD ++ R
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-R 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
V ++GE ++E G+ +IE+SAK N+NE+F+ +AK +
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GKT + RF + F TIG F + + L +K IWDTAGQER
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YDI+N +F+ ++ ++ + V + NK D++ +R
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+V E GE+ + + G+ ++ETSAK N+ F+ +A+ +
Sbjct: 128 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+GD G GKT + RF + F TIG F + + L +K IWDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYRG YDI+N +F+ ++ ++ + V + NK D++ +R
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+V E GE+ + + G+ ++ETSAK N+ F+ +A+ +
Sbjct: 130 QVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLVL+GD GKT + RF G F ++Q TIG F + L + VK IWDTAGQER
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 90
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ ++ YYR YDI+ +F ++++++ +V L NKSDL R
Sbjct: 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 150
Query: 132 EVPTEEGEQFSQENGMFY-IETSAKTAQNINELFYEIAKRL 171
EV E + ++ + IETSAK + N+ E F +A L
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 97/172 (56%), Gaps = 3/172 (1%)
Query: 3 RPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFD 62
RP + + +++++G G GKTSL RF F + + T+G F + + L ++
Sbjct: 21 RPAD--FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 63 IWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAA 122
IWDTAGQER++S+ YYR YDI+ +TF+ K ++ + + ++ + L
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 123 NKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
NK D ++ RE+ ++GE+F+Q+ GM + E SAK N++E+F ++ + +
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++G+ G GK+SL LRF F + TIG F + +S+ K IWDTAGQER
Sbjct: 17 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQ-IVVMALAANKSDLDSQ 130
+ +L P YYRG YD++ DTF + + + EL+ + +V L NK D ++
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN- 135
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
REV EG +F++++ +IE SAKT + F E+ +++
Sbjct: 136 REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 94/173 (54%), Gaps = 3/173 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MAR + + KL+++GD G GK+SL LRF F TIG F + + ++ VK
Sbjct: 2 MARDYDHLF--KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVK 59
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
IWDTAGQER+ ++ YYRG YD+++ ++F + + E+ + + V L
Sbjct: 60 LQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD-VCRIL 118
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
NK+D ++ V TE+ +F+ + G+ ETSAK N+ E+F I + + R
Sbjct: 119 VGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++GD GKT L RF G+F D+ E TIG F + + + +K +WDTAGQER
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 72 YH-SLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQ--GNQIVVMALAANKSDLD 128
+ S+ YYR YD++NM +F+ ++E ++ N I + L NK DL
Sbjct: 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLR 140
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQN---INELFYEIAKRL 171
S +VPT+ ++F+ + M ETSAK + + +F +A +L
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 12/190 (6%)
Query: 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
K + K+++LGD G GKTSL +++ +F +Q + TIGA F T+ + + + V IWDT
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
AGQER+ SL +YRG +D++ +TF R L+Q R + L
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
NK DL++ R+V T+ + + +N + Y ETSAK A N+ + F IA+ + + +
Sbjct: 124 GNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK----QET 178
Query: 181 GINLNPETPE 190
+ L E PE
Sbjct: 179 EVELYNEFPE 188
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN KL+++G+ GKTS R+ F T+G F + + E VK IW
Sbjct: 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIW 77
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERY ++ YYRG YDI+N ++FN +++ + L NK
Sbjct: 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNK 137
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
D++ +R VPTE+G+ +++ G + E SAK ++ + F
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
K + K+++LGD G GKTSL +++ +F +Q + TIGA F T+ + + + V IWDT
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
AGQER+ SL +YRG +D++ +TF R L+Q R + L
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAK 169
NK DL++ R+V T+ + + +N + Y ETSAK A N+ + F IA+
Sbjct: 124 GNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KL+L+G+ GKTS R+ F T+G F + + + +K IWDTAGQER
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+N ++F +++ + L NK DL+ +R
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER 143
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
VP E+G + + + G + E SAK N+ ++F
Sbjct: 144 VVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
K + K+++LGD G GKTSL +++ +F +Q + TIGA F T+ + + + V IWDT
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
AGQER+ SL +YRG +D++ +TF R L+Q R + L
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
NK D ++ R+V T+ + + +N + Y ETSAK A N+ + F IA+ + + +
Sbjct: 124 GNKIDFEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK----QET 178
Query: 181 GINLNPETPE 190
+ L E PE
Sbjct: 179 EVELYNEFPE 188
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV+LG +G GK++L ++F++G F ++ +PTI ++ Q+ + +I DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 65
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
+ ++ +Y + Y I+ TFN L +++ R + V M L NK DL+ +
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 125
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
R V E+G+ + Q N ++E+SAK+ N+NE+FY++ +++ R
Sbjct: 126 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++GD GKT L RF G+F D+ E TIG F + + + +K +WDTAGQER
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 72 YH-SLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQ--GNQIVVMALAANKSDLD 128
+ S+ YYR YD +N +F+ ++E ++ N I + L NK DL
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLR 149
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQN---INELFYEIAKRL 171
S +VPT+ ++F+ + ETSAK + + +F +A +L
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 12/190 (6%)
Query: 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
K + K+++LGD G GKTSL +++ +F +Q + TIGA F T+ + + + V IWDT
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDT 64
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFN-----RANKLVQELQRQGNQIVVMALA 121
AG ER+ SL +YRG +D++ +TF R L+Q R + L
Sbjct: 65 AGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL- 123
Query: 122 ANKSDLDSQREVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
NK DL++ R+V T+ + + +N + Y ETSAK A N+ + F IA+ + + +
Sbjct: 124 GNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK----QET 178
Query: 181 GINLNPETPE 190
+ L E PE
Sbjct: 179 EVELYNEFPE 188
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y ++ Y R + I+N +F + ++++R + ++ V M L NKSDL S
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS- 123
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
R V T++ + ++ G+ +IETSAKT Q +++ FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV+LG G GK++L ++F++G F ++ +PTI ++ Q+ + +I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
+ ++ +Y + Y I+ TFN L +++ R + V M L NK DL+ +
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDE 123
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
R V E+G+ + Q N ++E+SAK+ N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV+LG G GK++L ++F++G F D+ +PTI ++ Q+ + +I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
+ ++ +Y + Y I+ TFN L +++ R + + V M L NK DL+ +
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
R V E+G+ + Q ++E+SAK+ N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++LLGD G GK+SL R++ +F Q TIG F + L + V IWDTAGQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
+ SL +YRG + + + +F + +E + + + NK D+
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
Query: 128 DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
S+R+V TEE + + ++NG + Y ETSAK A N+ F E +R+
Sbjct: 129 -SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++LLGD G GK+SL R++ +F Q TIG F + L + V IWDTAGQER
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 70
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
+ SL +YRG + + + +F + +E + + + NK D+
Sbjct: 71 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 130
Query: 128 DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
S+R+V TEE + + ++NG + Y ETSAK A N+ F E +R+
Sbjct: 131 -SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++LLGD G GK+SL R++ +F Q TIG F + L + V IWDTAGQER
Sbjct: 13 KIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 72
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
+ SL +YRG + + + +F + +E + + + NK+D+
Sbjct: 73 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDI 132
Query: 128 DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRL 171
+R+V TEE + + ++NG + Y ETSAK + N+ F E +R+
Sbjct: 133 -KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y ++ Y R + I+N +F + ++++R + ++ V M L NK DL S
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
R V T++ + ++ G+ +IETSAKT Q +++ FY + + + +
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
N + K++++G G GK++L L+F+ +F + EPT ++ +++ L V+ DI D
Sbjct: 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 68
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
TAGQE Y ++ Y+R + I+ M++F +++ R + ++ V L NK
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
SDL+ +R+V EE + +++ + Y+ETSAKT N++++F+++ + +
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++G+ GKTS R+ F T+G F + + ++ +K IWDTAGQER
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+N ++FN +++ + L NK D++ +R
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
V +E G Q + G + E SAK N+ + F +RL V K
Sbjct: 127 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF----ERLVDVICEK 169
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+VL GD GK+S +R K +F + T+G F + L + +WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL---- 127
+ S+A Y+R YD++ +F + V ++ ++ V + L NK+D+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 128 --DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ Q+ VP GE+ + G + ETSAK NI E +A+ + +
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
N + K++++G G GK++L L+F+ +F + EPT ++ +++ L V+ DI D
Sbjct: 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 72
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
TAGQE Y ++ Y+R + I+ M++F +++ R + ++ V L NK
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
SDL+ +R+V EE + +++ + Y+ETSAKT N++++F+++ + +
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
N + K++++G G GK++L L+F+ +F + EPT ++ +++ L V+ DI D
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 60
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
TAGQE Y ++ Y+R + I+ M++F +++ R + ++ V L NK
Sbjct: 61 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
SDL+ +R+V EE + +++ + Y+ETSAKT N++++F+++ + +
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 95/164 (57%), Gaps = 3/164 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV+LG G GK++L ++F++G F ++ +PTI ++ Q+ + +I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQ 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
+ ++ +Y + Y I+ TFN L +++ R + + V M L NK DL+ +
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123
Query: 131 REVPTEEGEQFS-QENGMFYIETSAKTAQNINELFYEIAKRLAR 173
R V E+G+ + Q ++E+SAK+ N+NE+FY++ +++ R
Sbjct: 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y ++ Y R + I+N +F ++ ++++R + + V M L NK DL +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%)
Query: 13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72
L+L+GD G GK+ L LRF + + TIG F + + L T+K IWDTAGQER+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 73 HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
++ YYRG YD+++ ++FN + +QE+ R ++ V L NK DL
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + EPT ++ +++ L V+ DI DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQED 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y ++ Y+R + I+ M++F +++ R + ++ V L NKSDL+ +
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
R+V EE + + + + Y+ETSAKT N++++F+++ + +
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + EPT ++ +++ L V+ DI DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 67
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR---QGNQIVVMALAANKSDLD 128
Y ++ Y+R + I+ ++F + +++ R + ++I ++ + NKSDL+
Sbjct: 68 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG-NKSDLE 126
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+R+VP EE ++E G+ Y+ETSAKT N++++F+++ + +
Sbjct: 127 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y ++ Y R + I+N +F ++ ++++R + + V M L NK DL +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++G G GK++L L+F+ +F + EPT ++ +++ L V+ DI DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGLED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR---QGNQIVVMALAANKSDLD 128
Y ++ Y+R + I+ ++F + +++ R + ++I ++ + NKSDL+
Sbjct: 64 YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG-NKSDLE 122
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+R+VP EE ++E G+ Y+ETSAKT N++++F+++ + +
Sbjct: 123 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y ++ Y R + I+N +F ++ ++++R + + V M L NK DL +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AA 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEE 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y ++ Y R + I+N +F ++ ++++R + + V M L NK DL +
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AG 122
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
N + K++++G G GK++L L+F+ +F + EPT ++ +++ L V+ DI D
Sbjct: 2 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILD 60
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANK 124
TAG E Y ++ Y+R + I+ M++F +++ R + ++ V L NK
Sbjct: 61 TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
SDL+ +R+V EE + +++ + Y+ETSAKT N++++F+++ + +
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 4/169 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K++++G+ GKTS R+ F T+G F + + ++ +K IWDTAG ER
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLER 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y ++ YYRG YDI+N ++FN +++ + L NK D + +R
Sbjct: 70 YRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER 129
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
V +E G Q + G + E SAK N+ + F +RL V K S
Sbjct: 130 VVSSERGRQLADHLGFEFFEASAKDNINVKQTF----ERLVDVICEKXS 174
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
K + K++LLGD G GK+SL R++ +F Q TIG F + L + V IWDT
Sbjct: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-------QIVVMA 119
AGQER+ SL +YRG + + + +F +E + VV+
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 120 LAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARV 174
+K D R+V TEE + + ENG + Y+ETSAK N+ F E +++ V
Sbjct: 124 NKVDKED----RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV 175
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQE 70
K+++LGD G GKTSL R++ ++ Q + TIGA F T+ +++ + +WDTAGQE
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 71 RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSD 126
R+ SL +YRG YD++N +F E N + + NK D
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 127 LDSQREVPTEEGEQ-FSQENG---MFYIETSAKTAQNINELFYEIAK 169
+ +++ +E+ Q ++ G +F TSAK A N++ F EIA+
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIAR 174
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+V+LG GKTSLA +F++G+F + +PT+ + ++I++L + + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQ 130
Y L + G Y ++++ +F L Q+L G V + L NK+DL +
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174
REV EG++ ++ G ++E+SA+ Q +F ++ + +ARV
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + PT+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + PT+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK-----RLARVSPPKRSG 181
++ G+ YIETSAKT Q + + FY + + +L +++PP SG
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESG 178
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 8/171 (4%)
Query: 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT 66
K + KL + G G GK++L +RF+ +F + +PT+ + + Q ++ + V +I DT
Sbjct: 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDT 83
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA---NKLVQELQRQGNQIVVMALAAN 123
AGQE + R YDI++ +F ++ E+++ N V + L N
Sbjct: 84 AGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGN 140
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAKRLAR 173
K+DLD R+V TEEGE+ + E + E SA T + NI E+FYE+ + + R
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE+Y L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAGQE++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F + ++++R + ++ V M L NKSDL S R V T++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
++ G+ +IETSAKT Q +++ FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 87/152 (57%), Gaps = 3/152 (1%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F + ++++R + ++ V M L NKSDL S R V T++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
++ G+ +IETSAKT Q +++ FY + + + +
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++FI+ F +PTI ++ T+I S+ + DI DTAGQE + ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I++ +FN KL ++ R + + L NK+DL+SQR+VP E F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK 169
+ + Y E SAK N++E F ++ +
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +KF++W
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQE++ L YY +D+++ T+ ++L R I ++ L NK
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 129 VDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 3 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAG E++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 121
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 122 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
+Q KLVL+GD GTGKT+ R + G+F + T+G + + +KF++WDTAG
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
QE++ L YY +D+++ T+ ++L R I ++ L NK D+
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIK 120
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 121 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G + + KLV++G +G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI
Sbjct: 5 GGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDIL 63
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAAN 123
DTAGQE Y ++ Y R + I+N +F ++ ++++R + + V M L N
Sbjct: 64 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 123
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
K DL + R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 124 KCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA G +Q KLVL+GD GTGKT+ R + G+F + T+G + + +K
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F++WDTAG E++ L YY +D+++ T+ ++L R I ++ L
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-L 119
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 120 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NKSDL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
P + + KLV++G +G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI
Sbjct: 2 PLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDI 60
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAA 122
DTAGQE Y ++ Y R + I+N +F ++ ++++R + + V M L
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK DL + R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 121 NKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
P + + KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI
Sbjct: 2 PLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDI 60
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAA 122
DTAGQE Y ++ Y R + I+N +F ++ ++++R + + V M L
Sbjct: 61 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK DL + R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 121 NKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NKSDL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G+ + + KLV++G G GK++L ++ I+ F D+ +P+I ++ Q++ E T DI
Sbjct: 4 GSDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDIL 62
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAAN 123
DTAGQE Y ++ Y R + I+N +F ++ ++++R + + V M L N
Sbjct: 63 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 122
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
K DL + R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 123 KCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDI 63
G+ + Q K+V+LGD +GKTSL F + F Q + TIG FF + ++L V I
Sbjct: 1 GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRAN---KLVQELQRQGNQIVVMAL 120
WD GQ + Y G YDI+N +F +V+++ + ++AL
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
NK DL+ R + E+ +F QENG SAKT ++ F ++A + + K
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG E Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F + ++++R + ++ V M L NK DL S R V T++ +
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRLAR 173
++ G+ +IETSAKT Q +++ FY + + + +
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 183
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F N ++++R + + V M L NK DL + R V T++ +
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHEL 151
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ +IETSAKT Q + + FY + + +
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 15/177 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE----------ATVKF 61
K + LGD G GKTS+ ++ G+F + T+G F + + +
Sbjct: 13 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG-NQIVVMAL 120
+WDTAG ER+ SL ++R +D++N +F + +LQ ++ + L
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRLAR 173
NKSDL+ QR V EE + +++ G+ Y ETSA NI+ L I KR+ R
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
+Q KLVL+GD GTGKT+ R + G+F + T+G + + +KF++WDTAG
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
E++ L YY +D+++ T+ ++L R I ++ L NK D+
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIK 123
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 124 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 1/162 (0%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
+ K+V++G+ GK+S+ R+ KG F + TIG F + + +++ V+ +WDTAG
Sbjct: 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
QE + ++ YYRG + ++ ++F + +++ + I AL NK DL
Sbjct: 64 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKIDLL 122
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170
+ EE E ++ + + TS K N++E+F +A++
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G+ I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +W
Sbjct: 4 GSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALW 62
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
DTAGQE Y L P+ Y + I + D+ N K E++ + ++ L N
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGN 121
Query: 124 KSDLDS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
K DL + Q V EEG + G F Y+E SAKT + E+F E+A R
Sbjct: 122 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 180
Query: 171 LA 172
A
Sbjct: 181 AA 182
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K +L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK 169
++ G+ YIETSAKT Q + + FY + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++FI+ F +PTI ++ Q + + + + DI DTAGQE + ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVPTEEGEQF 141
+ +++ +F K +++ R ++ M L NK+DLD QR+V EEG+Q
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAK 169
+++ + Y+E SAK N+++ F+E+ +
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E + DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICL-LDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L N+ DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD+ GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 5 IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 63
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 64 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 122
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 123 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 179
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 3/169 (1%)
Query: 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
P + + KLV++G G GK++L ++ I+ F D+ +PTI ++ Q++ E T DI
Sbjct: 2 PLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDI 60
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAA 122
DTAG E Y ++ Y R + I+N +F ++ ++++R + + V M L
Sbjct: 61 LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK DL + R V + + + ++ G+ YIETSAKT Q + + FY + + +
Sbjct: 121 NKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +P+I ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G +Q KLVL+GD GTGKT+ R + G+ + T+G + + +KF++W
Sbjct: 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVW 69
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQE++ L YY +D+++ T+ ++L R I ++ L NK
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNK 128
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
D+ ++ + F ++ + Y + SAK+ N + F +A++L
Sbjct: 129 VDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG+E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLVL+GD GTGKT+ R + G+F + TIG + +KFD+WDTAG E+
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ L YY +D+++ T+ ++L R I ++ L NK D+ +R
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDV-KER 124
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
+V + F ++ + Y + SAK+ N + F +A++LA
Sbjct: 125 KVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLA 164
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLVL+GD GTGKT+ R + G+F + TIG + +KFD+WDTAG E+
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ L YY +D+++ T+ ++L R I ++ L NK D+ +R
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDV-KER 123
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
+V + F ++ + Y + SAK+ N + F +A++LA
Sbjct: 124 KVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLA 163
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLVL+GD GTGKT+ R + G+F + TIG + +KFD+WDTAG E+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ L YY +D+++ T+ ++L R I ++ L NK D+ +R
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDV-KER 131
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
+V + F ++ + Y + SAK+ N + F +A++LA
Sbjct: 132 KVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLA 171
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
KL+ LGD G GKT+ R+ +F + T+G F + + S V
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
+WDTAG ER+ SL ++R +D+++ +F + +LQ N +V
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRLARV 174
L NK+DL QREV + + +++ G+ Y ETSA T QN+ + L I KR+ +
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKC 190
Query: 175 -----SPPKRSGIN---LNPETPERKGFCC 196
P +G N L+ E P K C
Sbjct: 191 VEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DT GQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF-TQILSLSEATVKFDIWDTAGQE 70
K+ L+GD G GKT+ R + G+F T+GA L +KF++WDTAGQE
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 71 RYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
+ L +YY G +D+++ T + V+E Q + + ANK D+ ++
Sbjct: 73 KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL-ARVSPPKRSGINLNP 186
+++ + + + Y E SAKTA N F +A+ R S +NL P
Sbjct: 133 QKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEP 189
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +W
Sbjct: 1 GMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALW 59
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
DTAGQE Y L P+ Y + I + D+ N K E++ + ++ L N
Sbjct: 60 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGN 118
Query: 124 KSDLDS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
K DL + Q V EEG + G F Y+E SAKT + E+F E+A R
Sbjct: 119 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATR 177
Query: 171 LA 172
A
Sbjct: 178 AA 179
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F ++ +PTI ++ Q++ E T DI DTAGQE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
KL+ LGD G GKT+ R+ +F + T+G F + + S V
Sbjct: 27 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
+WDTAGQER+ SL ++R +D+++ +F + +LQ N +V
Sbjct: 87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV- 145
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160
L NK+DL QREV + + + + G+ Y ETSA T QN+
Sbjct: 146 -LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNV 186
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 123
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 123
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 65 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 123
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 124 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 180
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 66 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 124
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTA QE Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQEEASAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++ I+ F D+ +PTI ++ Q++ E T DI DTAG E Y ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
+ I+N +F ++ ++++R + + V M L NK DL + R V + + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++ G+ YIETSAKT Q + + FY + + +
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 18/182 (9%)
Query: 2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
A PG + + K+VL+GD G GKTSL + F G F + PT+ + L + V
Sbjct: 28 APPGVRSV--KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHL 84
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMAL 120
IWDTAGQ+ Y L P++Y +D+++ ++F N N+ E+ ++ ++ +
Sbjct: 85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVV 144
Query: 121 AANKSDLDSQRE------------VPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEI 167
K+DL + V G++ ++ G + Y+E SA+ N++ +F E
Sbjct: 145 GC-KTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203
Query: 168 AK 169
A+
Sbjct: 204 AE 205
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
KL+ LGD G GKT+ R+ +F + T+G F + + S V
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
+WDTAG ER+ SL ++R +D+++ +F + +LQ N +V
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE----LFYEIAKRLAR 173
L NK+DL QREV + + +++ G+ Y ETSA T QN+ + L I KR+ +
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 141
Query: 128 D------------SQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
Q V +EEG + F Y+E SAKT + + E+F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + F K QF + PT+ + I + V+ +WDTAG
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 82
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII-LVGNKKDL 141
Query: 128 D------------SQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
Q V +EEG + F Y+E SAKT + + E+F E+A R
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 196
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
+I+ KLV++GD GKT L + F K +F + PT+ + I + V+ +WDTA
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADI-EVDGKQVELALWDTA 81
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSD 126
GQE Y L P+ Y + + + D+ N K V E++ + ++ L ANK D
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKD 140
Query: 127 LDSQREVPTE----EGEQFSQENGMF---------YIETSAKTAQNINELFYEIAKRLA 172
L S V TE + E ++G Y+E SAKT + + E+F E A R A
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF-ETATRAA 198
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
KL+ LGD G GKT+ R+ +F + T+G F + + S V
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
+WDTAG ER+ SL ++R +D+++ +F +LQ N +V
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160
L NK+DL QREV + + +++ G+ Y ETSA T QN+
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + K QF + PT+ + I + V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL----------SLSEATVKF 61
KL+ LGD G GKT+ R+ +F + T+G F + + S V
Sbjct: 13 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQG---NQIVVM 118
+WDTAG ER+ SL ++R +D+++ +F +LQ N +V
Sbjct: 73 QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV- 131
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160
L NK+DL QREV + + +++ G+ Y ETSA T QN+
Sbjct: 132 -LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + K QF + PT+ + I + V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + K QF + PT+ + I + V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 119
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + K QF + PT+ + I + V+ +WDTAG
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 60
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 61 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 119
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 176
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + K QF + PT+ + I + V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 122 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD+ GKT L + F K QF PT+ + I + V+ +WDTAG
Sbjct: 4 IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 63 QEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EG + G F Y+E SAKT + E+F E+A R A
Sbjct: 122 RNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 178
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V +GD GKT + + + +F PT+ F + ++ V +WDTAGQE
Sbjct: 11 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQED 69
Query: 72 YHSLAPMYYRGXXXXXXXYD-ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--- 127
Y L P+ YRG + IS N K + EL+R + ++ L K DL
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLRDD 128
Query: 128 -----DSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
D + + +GE+ ++ G YIE S+KT QN+ +F K + + PP+R
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV--LQPPRRK- 185
Query: 182 INLNPETPERK 192
E P R+
Sbjct: 186 -----EVPRRR 191
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 17/176 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + K QF + PT+ + I + V+ +WDTAG
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADI-EVDGKQVELALWDTAG 62
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
QE Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 63 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 121
Query: 128 ----DSQRE--------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
++RE V +EEG + F Y+E SAKT + + E+F E+A R
Sbjct: 122 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF-EMATR 176
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V +GD GKT + + + F PT+ F ++ + TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL--- 127
Y+ L P+ YRG + + + ++ N A K + EL+ + ++ L K DL
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDD 125
Query: 128 -----DSQREVP--TEEGEQFSQENGM-FYIETSAKTAQNINELF 164
D VP T +GE+ + G YIE S+KT QN+ +F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + K QF + PT+ + I + V+ +WDTAG
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADI-EVDGKQVELALWDTAG 65
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDL 127
E Y L P+ Y + I + D+ N K E++ + ++ L NK DL
Sbjct: 66 LEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDL 124
Query: 128 DS------------QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
+ Q V EEG + G F Y+E SAKT + E+F E+A R A
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAA 181
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+ +LG GK+SL ++F++GQF D +PTI FT++++++ + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
Y Y Y ++++ +F + +L ++ + + L NK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
R + EEG+ ++ ++E+SAK Q ++F I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 5/159 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
++ + G G GK+SL LRF+KG F + PT+ + Q++S ++ I DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQ 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL---VQELQRQGNQIVVMALAANKSDLD 128
+ ++ + Y I++ + + + E++ I +M L NK D
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM-LVGNKCDES 122
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
REV + E E ++ ++ETSAK N+ ELF E+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+ +LG GK+SL ++F++GQF D +PTI FT++++++ + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
Y Y Y ++++ +F + +L ++ + + L NK DL +
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
R + EEG+ ++ ++E+SAK Q ++F I
Sbjct: 127 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+ +LG GK+SL ++F++GQF D +PTI FT++++++ + DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
Y Y Y ++++ +F + +L ++ + + L NK DL +
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 124
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
R + EEG+ ++ ++E+SAK Q ++F I
Sbjct: 125 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+ +LG GK+SL ++F++GQF D +PTI FT++++++ + DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDE 61
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130
Y Y Y ++++ +F + +L ++ + + L NK DL +
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 121
Query: 131 REVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167
R + EEG+ ++ ++E+SAK Q ++F I
Sbjct: 122 RVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V +GD GKT L + + F PT+ F ++ ++ ATV +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 72 YHSLAPMYYRGXXXXXXXYD-ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--- 127
Y+ L P+ YRG + IS N + K + EL+ + ++ L K DL
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV-LVGTKLDLRDD 127
Query: 128 -----DSQREVP--TEEGEQFSQENGM-FYIETSAKTAQNINELF 164
D VP T +GE+ + G YIE S+K+ +N+ +F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 13/183 (7%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K+SL LRF+KG F D PTI + Q++S ++ I DT G ++ ++ +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 83 XXXXXXXYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE 139
+ +++ + KL+ +++ I VM L NK D ++QREV T E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM-LVGNKCD-ETQREVDTREAQ 137
Query: 140 QFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPP-----KRSGINLNPETPERKGF 194
+QE ++ETSAK N+ ELF E+ R + KRSG T KG
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSG--KQKRTDRVKGK 195
Query: 195 CCL 197
C L
Sbjct: 196 CTL 198
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V +GD GKT + + + F PT+ F ++ + +TV +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 72 YHSLAPMYYRGXXXXXXXYD-ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y+ L P+ YRG + IS N K + EL+ I ++ L K DL
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV-LVGTKLDLRDD 125
Query: 131 RE----------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLA 172
++ + T +GE+ + G Y+E S+KT QN+ +F + A R+A
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-DTAIRVA 177
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+V++GD GKT L L F KG+ PT+ F + ++ +WDTAGQE
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--DS 129
Y L P+ Y + ++N +F+ + + + L K DL D
Sbjct: 84 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG 143
Query: 130 QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELF 164
+V +EG+ Q+ G YIE S+ +NE+F
Sbjct: 144 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
A P + KLV++GD G GK++L ++F + F D +PTI ++ +
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHT-EIDNQWAIL 68
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
D+ DTAGQE + ++ Y R Y +++ +F ++ Q + R + + M L
Sbjct: 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
ANK DL R+V ++G++ + + + YIETSAK N+++ F+++ +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 4/156 (2%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K+V++GD GKT L L F KG+ PT+ F + ++ +WDTAGQE
Sbjct: 24 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL--DS 129
Y L P+ Y + ++N +F+ + + + L K DL D
Sbjct: 83 YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG 142
Query: 130 QREVPTEEGEQFSQENGMF-YIETSAKTAQNINELF 164
+V +EG+ Q+ G YIE S+ +NE+F
Sbjct: 143 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 90/170 (52%), Gaps = 3/170 (1%)
Query: 2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
A P + KLV++GD G GK++L ++F + F D+ +PTI ++ +
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAIL 68
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
D+ DTAGQE + ++ Y R Y +++ +F ++ Q + R + + M L
Sbjct: 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
ANK DL R+V ++G++ + + + YIETSAK N+++ F+++ +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 21/178 (11%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
I+ KLV++GD GKT L + KGQF + PT+ + + + V+ +WDTAG
Sbjct: 9 IRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADV-EVDGRRVELALWDTAG 67
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQR--QGNQIVVMALAANKS 125
QE Y L P+ Y + I D+ N K + E+ QG I+ L K
Sbjct: 68 QEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPII---LVGCKV 124
Query: 126 DL------------DSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKR 170
DL + Q+ V ++EG+ + + G Y E SAKT + E+F E A R
Sbjct: 125 DLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF-EAATR 181
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 89/170 (52%), Gaps = 3/170 (1%)
Query: 2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
A P + KLV++GD G GK++L ++F + F + +PTI ++ +
Sbjct: 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHT-EIDNQWAIL 68
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
D+ DTAGQE + ++ Y R Y +++ +F ++ Q + R + + M L
Sbjct: 69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
ANK DL R+V ++G++ + + + YIETSAK N+++ F+++ +
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 23 KTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG 82
K++L ++F+ G F ++ +PTI F+ + + + + +I DTAG E++ S+ +Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 83 XXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQF 141
Y + N +F + ++ R + + V + L NK DL+S+REV + EG
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 SQENGMFYIETSAKTAQNINELFYEIAKRL 171
++E G ++ETSAK+ ++ELF EI +++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKF 61
A P + KLV++GD G GK++L ++F + F +PTI ++ +
Sbjct: 5 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAIL 63
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMAL 120
D+ DTAGQE + ++ Y R Y +++ +F ++ Q + R + + M L
Sbjct: 64 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 123
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELFYEIAK 169
ANK DL R+V ++G++ + + + YIETSAK N+++ F+++ +
Sbjct: 124 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 8/158 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS---EATVKFDIWDTAG 68
++VLLGD G GKTSLA F Q D E +G + + L++ V D W+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSD 126
++ S +G Y I++ +F A++L +L+R Q + + ++ L NK+D
Sbjct: 65 LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII-LVGNKAD 122
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
L REV EEG + +IETSA N+ ELF
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAF--FTQILSLSEATVKFDIWDTAG 68
K VL+GD GKTSL + + + + PT AF F+ ++S+ V+ + DTAG
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT---AFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSD- 126
Q+ + L P+ Y + + + +F N + K V E++ + ++ L +SD
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDL 136
Query: 127 ---------LDSQRE--VPTEEGEQFSQE-NGMFYIETSAKTAQNINELF 164
LD +E VP E + ++E YIE SA T +N+ E+F
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
++VL+G+ G GK++LA F D +G + + L + S + D+W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
G+ + L + Y I++ +F +A++L +L+R + + + + L NKSD
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPK 178
L REV EG + +IETSA N+ ELF I + RL R S K
Sbjct: 126 LVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
++VL+G+ G GK++LA F D +G + + L + S + D+W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
G+ + L + Y I++ +F +A++L +L+R + + + + L NKSD
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPK 178
L REV EG + +IETSA N+ ELF I + RL R S K
Sbjct: 126 LVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
++VL+G+ G GK++LA F D +G + + L + S + D+W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
G+ + L + Y I++ +F +A++L +L+R + + + + L NKSD
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 156
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK--RLARVSPPK 178
L REV EG + +IETSA N+ ELF I + RL R S K
Sbjct: 157 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 17/198 (8%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
M P + + KLVL+GD+ GKT++ K + + PT+ + T L E V+
Sbjct: 2 MRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVE 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMA 119
+WDT+G Y ++ P+ Y +DIS +T + A K E+ V+
Sbjct: 61 LSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLL 120
Query: 120 LAAN---KSDLDSQREVPTEEGEQFSQENGM---------FYIETSAKTAQNINELFYEI 167
+ ++DL + E+ ++ S E G Y+E SA T++ +
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRT 180
Query: 168 AKRLARVSP---PKRSGI 182
A L P P++S +
Sbjct: 181 ASMLCLNKPSPLPQKSPV 198
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 5 GNKIIQA----KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
G+KII A K V++GD GKT L + + +F + PT+ + ++ E
Sbjct: 1 GSKIISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT- 59
Query: 61 FDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ-------- 111
++DTAGQE Y L P+ Y + + + +F N K V E+
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 119
Query: 112 -GNQI-------VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINE 162
G QI + LA NK Q+ + E E+ +++ + Y+E SA T + +
Sbjct: 120 VGTQIDLRDDPSTIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKN 174
Query: 163 LFYEIAKRLARVSPPK 178
+F E LA + PP+
Sbjct: 175 VFDEAI--LAALEPPE 188
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
P + + KLVL+GD+ GKT++ K + + PT+ + T L E V+ +
Sbjct: 4 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSL 62
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAA 122
WDT+G Y ++ P+ Y +DIS +T + A K E+ V+ +
Sbjct: 63 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC 122
Query: 123 N---KSDLDSQREVPTEEGEQFSQENGM---------FYIETSAKTAQNINELFYEIAKR 170
++DL + E+ ++ S E G Y+E SA T++ + A
Sbjct: 123 KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 182
Query: 171 LARVSP---PKRSGI 182
L P P++S +
Sbjct: 183 LCLNKPSPLPQKSPV 197
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
P + + KLVL+GD+ GKT++ K + + PT+ + T L E V+ +
Sbjct: 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSL 79
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAA 122
WDT+G Y ++ P+ Y +DIS +T + A K E+ V+ +
Sbjct: 80 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGC 139
Query: 123 N---KSDLDSQREVPTEEGEQFSQENGM---------FYIETSAKTAQNINELFYEIAKR 170
++DL + E+ ++ S E G Y+E SA T++ + A
Sbjct: 140 KTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASM 199
Query: 171 LARVSP---PKRSGI 182
L P P++S +
Sbjct: 200 LCLNKPSPLPQKSPV 214
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
N+ ++ K+V++GD GKT+L F K F + PT+ + T + ++ +WD
Sbjct: 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 82
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL----VQELQRQGNQIVVMALA 121
T+G Y ++ P+ Y +DIS +T + K +QE ++V +
Sbjct: 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 142
Query: 122 ANKSD------LDSQREVPT--EEGEQFSQENG-MFYIETSAKTAQN-INELFY 165
++D L + R+ P ++G +++ G YIE SA ++N + ++F+
Sbjct: 143 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 196
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 12 KLVLLGDMGTGKTSLALRFIK-GQFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTA 67
++VL+G+ G GK++LA F D +G + + L + S + D+W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 68 GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSD 126
G+ + L + Y I++ +F +A++L +L+R + + + + L NKSD
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
Query: 127 LDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
L REV EG + +IETSA N+ ELF I +++
Sbjct: 126 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
N+ ++ K+V++GD GKT+L F K F + PT+ + T + ++ +W
Sbjct: 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL----VQELQRQGNQIVVMAL 120
DT+G Y ++ P+ Y +DIS +T + K +QE ++V
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 120
Query: 121 AANKSD------LDSQREVPT--EEGEQFSQENG-MFYIETSAKTAQN-INELFY 165
+ ++D L + R+ P ++G +++ G YIE SA ++N + ++F+
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 175
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
N+ ++ K+V++GD GKT+L F K F + PT+ + T + ++ +WD
Sbjct: 19 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWD 77
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKL----VQELQRQGNQIVVMALA 121
T+G Y ++ P+ Y +DIS +T + K +QE ++V +
Sbjct: 78 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 137
Query: 122 ANKSD------LDSQREVPT--EEGEQFSQENG-MFYIETSAKTAQN-INELFY 165
++D L + R+ P ++G +++ G YIE SA ++N + ++F+
Sbjct: 138 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFH 191
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 5 GNKIIQA-KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
G+K++QA K V++GD GKT L + + F + PT+ + ++ + V +
Sbjct: 1 GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 59
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAA 122
WDTAGQE Y L P+ Y + + + +F N K E++ ++ L
Sbjct: 60 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVG 118
Query: 123 NKSDLDSQRE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAK 169
K DL ++ + +G ++E G Y+E SA T + + +F E A
Sbjct: 119 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AI 177
Query: 170 RLARVSPPKR 179
R PP +
Sbjct: 178 RAVLCPPPVK 187
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD+ GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
+ PP+
Sbjct: 177 LEPPE 181
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G+ + K V++GD GKT L + + +F + PT+ + ++ E ++
Sbjct: 1 GSHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLF 59
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQ 114
DTAGQE Y L P+ Y + + + +F N K V E+ G Q
Sbjct: 60 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 119
Query: 115 I-------VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
I + LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 120 IDLRDDPSTIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 167 IAKRLARVSPPK 178
LA + PP+
Sbjct: 175 AI--LAALEPPE 184
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G+ + K V++GD GKT L + + +F + PT+ + ++ E ++
Sbjct: 1 GSHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLF 59
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQ 114
DTAGQE Y L P+ Y + + + +F N K V E+ G Q
Sbjct: 60 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 119
Query: 115 I-------VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
I + LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 120 IDLRDDPSTIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 174
Query: 167 IAKRLARVSPPK 178
LA + PP+
Sbjct: 175 AI--LAALEPPE 184
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 14/175 (8%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G + K V++GD GKT L + + F ++ PT+ + + ++ ++
Sbjct: 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGKQYLLGLY 71
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQ 114
DTAGQE Y L P+ Y + + N +F N + V EL+ G Q
Sbjct: 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131
Query: 115 IVVMALAANKSDLDSQREVP--TEEGEQFSQENG-MFYIETSAKTAQNINELFYE 166
I + + L+ +E P E+G++ ++E G Y+E SA T + + +F E
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
+ PP+
Sbjct: 177 LEPPE 181
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 125 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 177
Query: 174 VSPPK 178
+ PP+
Sbjct: 178 LEPPE 182
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
+ PP+
Sbjct: 177 LEPPE 181
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 65
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 126 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 178
Query: 174 VSPPK 178
+ PP+
Sbjct: 179 LEPPE 183
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
+ PP+
Sbjct: 177 LEPPE 181
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 73
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 134 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 186
Query: 174 VSPPK 178
+ PP+
Sbjct: 187 LEPPE 191
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEATVK-FDIWDTAG 68
K++LLG G GK++LA F G D E + + ++ EA++ +DIW+ G
Sbjct: 4 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 69 QERY--HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANK 124
H +A Y +++ +F +A++L +L+R Q + + ++ L NK
Sbjct: 62 GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNK 115
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
SDL REV +EG + +IETSA N+ LF + +++
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEATVK-FDIWDTAG 68
K++LLG G GK++LA F G D E + + ++ EA++ +DIW+ G
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69 QERY--HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANK 124
H +A Y +++ +F +A++L +L+R Q + + ++ L NK
Sbjct: 67 GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
SDL REV +EG + +IETSA N+ LF + +++
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEATVK-FDIWDTAG 68
K++LLG G GK++LA F G D E + + ++ EA++ +DIW+ G
Sbjct: 9 KVLLLGAPGVGKSALARIF--GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 69 QERY--HSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANK 124
H +A Y +++ +F +A++L +L+R Q + + ++ L NK
Sbjct: 67 GRWLPGHCMAM-----GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNK 120
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
SDL REV +EG + +IETSA N+ LF + +++
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + + E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYT-LGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
+ PP+
Sbjct: 177 LEPPE 181
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 65
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 66 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 124
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E A R PP
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 183
Query: 178 KR 179
+
Sbjct: 184 VK 185
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E A R PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
+
Sbjct: 182 VK 183
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E A R PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
+
Sbjct: 182 VK 183
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E A R PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
+
Sbjct: 182 VK 183
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E A R PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
+
Sbjct: 182 VK 183
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GK L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 12 KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQED 70
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 71 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 130
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 131 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 183
Query: 174 VSPPK 178
+ PP+
Sbjct: 184 LEPPE 188
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSLSEAT-VKFDIW---D 65
K++L+G+ G GK++LA F Q EP + + ++ E T V +DIW D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQ--RQGNQIVVMALAAN 123
G R H L + +++ +F++ + + L+ R + + V+ L N
Sbjct: 85 AGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGN 138
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
KSDL REV EEG + +IETSA N ELF
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAG E
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGLED 67
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 128 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 180
Query: 174 VSPPK 178
+ PP+
Sbjct: 181 LEPPE 185
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 67
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 128 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGLED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLAR 173
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E LA
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI--LAA 176
Query: 174 VSPPK 178
+ PP+
Sbjct: 177 LEPPE 181
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 65
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 126 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD+ GKT L + + F + PT+ + ++ S+ V +WDTAGQE
Sbjct: 11 KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKP-VNLGLWDTAGQED 69
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + ++ N K E++ ++ L K DL
Sbjct: 70 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 131 RE------------VPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
++ + +G ++E + + Y+E SA T + + +F E
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 177
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
G + K V++GD+ GKT L + + F + PT+ + ++ S+ V +W
Sbjct: 5 GGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKP-VNLGLW 63
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN 123
DTAGQE Y L P+ Y + + + ++ N K E++ ++ L
Sbjct: 64 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGT 122
Query: 124 KSDLDSQRE------------VPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
K DL ++ + +G ++E + + Y+E SA T + + +F E
Sbjct: 123 KLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E A R PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
+
Sbjct: 182 VK 183
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDD 123
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 64
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 65 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDD 123
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + PT+ + ++ E + DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLRDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E A R PP
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE-AIRAVLCPPP 181
Query: 178 KR 179
+
Sbjct: 182 VK 183
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPIL-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDMGTGKTSLALRF--IKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIW---D 65
K++L+G+ G GK++LA F ++G + E + ++ E T + +DIW D
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQ--RQGNQIVVMALAAN 123
G + H L + +++ +F++ + + L+ R + + V+ L N
Sbjct: 64 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGN 117
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
KSDL REV EEG + +IETSA N ELF
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 12 KLVLLGDMGTGKTSLALRF--IKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIW---D 65
K++LLG+ G GK++LA F ++G + E + ++ E T + +DIW D
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 66 TAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQ--RQGNQIVVMALAAN 123
G + H L + +++ +F++ + + L+ R + + V+ L N
Sbjct: 74 AGGWLQDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGN 127
Query: 124 KSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164
KSDL REV EEG + +IETSA N ELF
Sbjct: 128 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + +F + P + + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + + + PT+ + ++ E ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQ---------GNQI------ 115
Y L P+ Y + + + +F N K V E+ G QI
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 116 -VVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYE 166
+ LA NK Q+ + E E+ +++ + Y+E SA T + + +F E
Sbjct: 124 STIEKLAKNK-----QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLAR 173
++ + +G ++E G Y+E SA T + + +F E + + +
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 90
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 149
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +L L+G +GKT+ GQF + PT+G + +++ V IWD GQ
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGF----NMRKVTKGNVTIKIWDIGGQ 77
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTF----NRANKLVQELQRQGNQIVVMALAANKS 125
R+ S+ Y RG D ++ + N + L+ + Q QG ++V+ NK
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 DL 127
DL
Sbjct: 135 DL 136
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 17/182 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ S+ V +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKP-VNLGLWDTAGQED 63
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + ++ N K E++ ++ L K DL
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 131 RE------------VPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E + + Y+E SA T + + +F E A R P
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE-AIRAVLCPQP 181
Query: 178 KR 179
R
Sbjct: 182 TR 183
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFI-KG-QFYDQQEPTIGAAFFTQILSLSEATVKFDIW-- 64
++ K+ ++G+ GK++L F KG +F T G +++ + TV +++
Sbjct: 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLL 78
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRAN---KLVQELQRQGNQIVVMALA 121
DTAG + Y Y+ G +D+S+M++F +L++ + + + L
Sbjct: 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 122 ANKSDLDSQR-EVPTEEGEQFSQENGMFYIETSAK-TAQNINELFYEIAKRLAR 173
ANK+DL QR +V + + ++ N + + + SA ++ + F IA R
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 73
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 132
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 24 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 82
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 83 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 141
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +L L+G +GKT+ GQF + PT+G + +++ V +WD GQ
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF----NMRKITKGNVTIKLWDIGGQ 77
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTF----NRANKLVQELQRQGNQIVVMALAANKS 125
R+ S+ Y RG D ++ + N + L+ + Q QG ++V+ NK
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 126 DL 127
DL
Sbjct: 135 DL 136
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNK + ++++LG GKT++ + GQ PT+G + +++ VKF++W
Sbjct: 9 GNK--EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMAL 120
D GQ++ L YY G D ++ D + A QEL R N + ++ +
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 118
Query: 121 AANKSDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
ANK DL D+ + +E ++ + +Y++ S T+
Sbjct: 119 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 157
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +L L+G +GKT+ GQF + PT+G + +++ V +WD GQ
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF----NMRKITKGNVTIKLWDIGGQ 86
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTF----NRANKLVQELQRQGNQIVVMALAANKS 125
R+ S+ Y RG D ++ + N + L+ + Q QG ++V+ NK
Sbjct: 87 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 143
Query: 126 DL 127
DL
Sbjct: 144 DL 145
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 16/159 (10%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNK + ++++LG GKT++ + GQ PT+G + +++ VKF++W
Sbjct: 10 GNK--EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMAL 120
D GQ++ L YY G D ++ D + A QEL R N + ++ +
Sbjct: 63 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AANKSDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
ANK DL D+ + +E ++ + +Y++ S T+
Sbjct: 120 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 158
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 17/177 (9%)
Query: 5 GNKIIQA-KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
G+ +QA K V++GD GK L + + F + PT+ + ++ + V +
Sbjct: 4 GSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGL 62
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAA 122
WDTAGQE Y L P+ Y + + + +F N K E++ ++ L
Sbjct: 63 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVG 121
Query: 123 NKSDLDSQRE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
K DL ++ + +G ++E G Y+E SA T + + +F E
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 178
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F+ K E++ ++ L K DL
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 274
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E + A + PP
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR--AVLCPP 332
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F+ K E++ ++ L K DL
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 274
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E + A + PP
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR--AVLCPP 332
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F+ K E++ ++ L K DL
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 274
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYEIAKRLARVSPP 177
++ + +G ++E G Y+E SA T + + +F E + A + PP
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR--AVLCPP 332
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + + PT+ + ++ + V +WDTAGQE
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 90
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 149
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ ++++LG GKT++ + GQ PT+G + +++ VKF++WD GQ
Sbjct: 322 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG----FNVETVTYKNVKFNVWDVGGQ 376
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKS 125
++ L YY G D ++ D + A QEL R N + ++ + ANK
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQ 433
Query: 126 DL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
DL D+ + +E ++ + +Y++ S T+
Sbjct: 434 DLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 467
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAG E
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 66
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 67 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 125
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 36/199 (18%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQED 65
Query: 72 YHSLAPMYYRGXXXXXXXYDISN-------MDTF-------------NRANKLVQELQRQ 111
Y L P+ Y DI++ D F N K E++
Sbjct: 66 YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 112 GNQIVVMALAANKSDLDSQRE------------VPTEEGEQFSQENGMF-YIETSAKTAQ 158
++ L K DL ++ + +G ++E G Y+E SA T +
Sbjct: 126 CPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
Query: 159 NINELFYEIAKRLARVSPP 177
+ +F E A R PP
Sbjct: 185 GLKTVFDE-AIRAVLCPPP 202
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K V++GD GKT L + + F + PT+ + ++ + V +WDTAG E
Sbjct: 32 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 90
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130
Y L P+ Y + + + +F N K E++ ++ L K DL
Sbjct: 91 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDD 149
Query: 131 RE------------VPTEEGEQFSQENGMF-YIETSAKTAQNINELFYE 166
++ + +G ++E G Y+E SA T + + +F E
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
++++LG GKT++ + GQ PT+G + +++ VKF++WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
L YY G D ++ D + A QEL R N + ++ + ANK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 -DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
D+ + +E ++ + +Y++ S T+
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 145
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
++++LG GKT++ + GQ PT+G + +++ VKF++WD GQ++
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
L YY G D ++ D + A QEL R N + ++ + ANK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQDL 113
Query: 128 -DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
D+ + +E ++ + +Y++ S T+
Sbjct: 114 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 145
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNK + ++++LG GKT++ + GQ PT+G + +++ VKF++W
Sbjct: 10 GNK--EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVW 62
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMAL 120
D G ++ L YY G D ++ D + A QEL R N + ++ +
Sbjct: 63 DVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILI 119
Query: 121 AANKSDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
ANK DL D+ + +E ++ + +Y++ S T+
Sbjct: 120 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 158
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
+++ LG GKT++ + GQ PT+G + +++ VKF++WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGGQDK 56
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDL 127
L YY G D ++ D + A QEL R N + ++ + ANK DL
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQDL 113
Query: 128 -DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
D+ + +E ++ + +Y++ S T+
Sbjct: 114 PDAXKPHEIQEKLGLTRIRDRNWYVQPSCATS 145
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNK + +++++G G GKT++ + G+ PTIG + ++ + F +W
Sbjct: 14 GNK--EMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVETVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-QIVVMALAAN 123
D GQ+R SL YYR D ++ A +++Q + + + V + AN
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFAN 126
Query: 124 KSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTA 157
K DL S E+ TE+ S N ++I+++ T+
Sbjct: 127 KQDLPEAMSAAEI-TEKLGLHSIRNRPWFIQSTCATS 162
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
++ ++++LG GKT++ + GQ PT+G + +++ VKF++WD G
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGG 56
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANK 124
++ L YY G D ++ D + A QEL R N + ++ + ANK
Sbjct: 57 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 113
Query: 125 SDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
DL D+ + +E ++ + +Y++ S T+
Sbjct: 114 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 148
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
++ ++++LG GKT++ + GQ PT+G + +++ VKF++WD G
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF----NVETVTYKNVKFNVWDVGG 55
Query: 69 QERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANK 124
++ L YY G D ++ D + A QEL R N + ++ + ANK
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANK 112
Query: 125 SDL-DSQREVPTEEGEQFSQ-ENGMFYIETSAKTA 157
DL D+ + +E ++ + +Y++ S T+
Sbjct: 113 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 147
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNK + +++++G G GKT++ + G+ PTIG + ++ + F +W
Sbjct: 14 GNK--EMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVETVQYKNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-QIVVMALAAN 123
D GQ+R SL YYR D ++ A +++Q + + + + AN
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFAN 126
Query: 124 KSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTA 157
K DL S E+ TE+ S N ++I+ + T+
Sbjct: 127 KQDLPEAMSAAEI-TEKLGLHSIRNRPWFIQATCATS 162
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 10/151 (6%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++++G GKTS+ + G+ PTIG + ++ + F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIV-TTIPTIGF----NVETVEYKNISFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD 128
++ L YY+ D ++ D A +L++ L + ++ + ANK DL
Sbjct: 72 DKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLP 131
Query: 129 ---SQREVPTEEGEQFSQENGMFYIETSAKT 156
S EV + G Q + +N +Y +TS T
Sbjct: 132 QAMSISEVTEKLGLQ-TIKNRKWYCQTSCAT 161
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNK + +++++G G GKT++ + G+ PTIG + + + F +W
Sbjct: 14 GNK--EMRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVECVQYCNISFTVW 66
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALA-AN 123
D GQ+R SL YY D ++ A +++Q + + L AN
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFAN 126
Query: 124 KSDLD---SQREVPTEEGEQFSQENGMFYIETSAKTA 157
K DL S E+ TE+ S N ++I+ + T+
Sbjct: 127 KQDLPEAMSAAEI-TEKLGLHSIRNRPWFIQATCATS 162
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
+++++G G GKT++ + G+ PTIG + ++ + F +WD GQ+R
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGF----NVETVQYKNISFTVWDVGGQDR 56
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLD-- 128
SL YYR D ++ A +++Q + + + + ANK DL
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEA 116
Query: 129 -SQREVPTEEGEQFSQENGMFYIETSAKTA 157
S E+ TE+ S N ++I+ + T+
Sbjct: 117 MSAAEI-TEKLGLHSIRNRPWFIQATCATS 145
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ ++++LG G GKT++ R G+ + PTIG + +LS +K ++WD GQ
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGF----NVETLSYKNLKLNVWDLGGQ 72
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANK-LVQELQRQGNQIVVMALAANKSD 126
YY D ++ D + A+K L LQ + Q + + ANK D
Sbjct: 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ ++++LG G GKT++ R G+ PTIG + +++ +KF +WD GQ
Sbjct: 2 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF----NVETVTYKNLKFQVWDLGGQ 56
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD 128
YY D + D + ++LV L+ + + ++ + ANK D++
Sbjct: 57 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 116
Query: 129 SQREVPTE 136
Q P+E
Sbjct: 117 -QAMTPSE 123
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYD--QQEPTIG---AAFFTQILSLSEATVKFDIW 64
+ KL ++G+ G+GKT+L + K + D Q T+G + QI + + ++W
Sbjct: 2 RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 65 DTAGQERYHSLAPMYYRGXXXXXXXYDIS 93
D AG+E ++S P + YD+S
Sbjct: 62 DFAGREEFYSTHPHFXTQRALYLAVYDLS 90
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYD--QQEPTIG---AAFFTQILSLSEATVKFDIWDT 66
KL ++G+ G+GKT+L + K + D Q T+G + QI + + ++WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 67 AGQERYHSLAPMYYRGXXXXXXXYDIS 93
AG+E ++S P + YD+S
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLS 88
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
Q +++++G GKT++ + G+ PTIG + ++ + F +WD GQ
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF----NVETVEYKNICFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQ----GNQIVVMALAANKS 125
+R L Y++ D ++ + R ++ ELQ+ + V+ L ANK
Sbjct: 72 DRIRPLWKHYFQNTQGLIFVVDSNDRE---RIQEVADELQKMLLVDELRDAVLLLFANKQ 128
Query: 126 DLDSQ---REVPTEEGEQFSQENGMFYIETSAKTA-----QNINELFYEIAKR 170
DL + E+ + G Q S N +Y++ + T + ++ L E++KR
Sbjct: 129 DLPNAMAISEMTDKLGLQ-SLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA- 67
++ L +LG G GK++L ++F+ +F + +P + + ++ ++ V + DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTAD 78
Query: 68 -----GQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQI---VVMA 119
ERY + A + Y + + +F+ ++ ++ L + +
Sbjct: 79 LDTPRNCERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL 131
Query: 120 LAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA-QNINELFYEIAKRLAR 173
L NK D+ R+V EG + G + E SA +++ +F+E + R
Sbjct: 132 LLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++++G GKT++ + G+ PTIG + ++ + F +WD GQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG----FNVETVEYKNISFTVWDVGGQ 219
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDL 127
++ L Y++ D ++ + N A +L++ L + V+ + ANK DL
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +L++LG GKT++ +F G+ D PT+G I +L K +IWD GQ
Sbjct: 16 ELRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGF----NIKTLEHRGFKLNIWDVGGQ 70
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV--------MALA 121
+ S Y+ I +D+ +R +Q+ QR+ ++V + +
Sbjct: 71 KSLRSYWRNYFESTDGL-----IWVVDSADRQR--MQDCQRELQSLLVEERLAGATLLIF 123
Query: 122 ANKSDL 127
ANK DL
Sbjct: 124 ANKQDL 129
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ ++++LG G GKT++ R G+ PTIG + +++ +KF +WD G
Sbjct: 4 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF----NVETVTYKNLKFQVWDLGGL 58
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD 128
YY D + D + ++LV L+ + + ++ + ANK D++
Sbjct: 59 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 118
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +L++LG GKT++ +F G+ D PT+G I +L K +IWD GQ
Sbjct: 18 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQ 72
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV--------MALA 121
+ S Y+ I +D+ +R +Q+ QR+ ++V + +
Sbjct: 73 KSLRSYWRNYFESTDGL-----IWVVDSADRQR--MQDCQRELQSLLVEERLAGATLLIF 125
Query: 122 ANKSDL 127
ANK DL
Sbjct: 126 ANKQDL 131
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +L++LG GKT++ +F G+ D PT+G I +L K +IWD GQ
Sbjct: 18 ELRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQ 72
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV--------MALA 121
+ S Y+ I +D+ +R +Q+ QR+ ++V + +
Sbjct: 73 KSLRSYWRNYFESTDGL-----IWVVDSADRQR--MQDCQRELQSLLVEERLAGATLLIF 125
Query: 122 ANKSDL 127
ANK DL
Sbjct: 126 ANKQDL 131
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 1 MARPGNKIIQAK---LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA 57
++R N++ Q K ++++G GKT++ + G+ PTIG + ++
Sbjct: 5 VSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVV-TTIPTIGF----NVETVEFR 59
Query: 58 TVKFDIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQ--- 114
+ F +WD GQ++ L YY D ++ + + A +EL R N+
Sbjct: 60 NISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEEL 116
Query: 115 -IVVMALAANKSDL 127
++ + ANK DL
Sbjct: 117 KDAIILVFANKQDL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 15/170 (8%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
Q +++++G GKT++ + G+ PTIG + ++ + F +WD GQ
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF----NVETVEYKNICFTVWDVGGQ 83
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNR-ANKLVQELQRQGNQIVVMALAANKSDLD 128
++ L Y++ D ++ + A++L + LQ + V+ + ANK D+
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143
Query: 129 SQ---REVPTEEGEQFSQENGMFYIETSAKTA-----QNINELFYEIAKR 170
+ E+ + G Q + +Y++ + T ++ L +E++KR
Sbjct: 144 NAMPVSELTDKLGLQHLRSR-TWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++++G GKT++ + G+ PTIG + ++ + F +WD GQ
Sbjct: 16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF----NVETVEYKNISFTVWDVGGQ 70
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDL 127
++ L Y++ D ++ + N A +L++ L + V+ + ANK DL
Sbjct: 71 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 129
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++++G GKT++ + G+ PTIG + ++ + F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF----NVETVEYKNISFTVWDVGGQ 71
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDL 127
++ L Y++ D ++ + N A +L++ L + V+ + ANK DL
Sbjct: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 130
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
+++++G GKT++ + G+ PTIG + ++ + F +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF----NVETVEYKNISFTVWDVGGQDK 56
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDL 127
L Y++ D ++ + N A +L++ L + V+ + ANK DL
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++++G GKT++ + G+ PTIG + ++ + F +WD GQ
Sbjct: 20 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF----NVETVEYKNISFTVWDVGGQ 74
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQ----IVVMALAANKS 125
++ L Y++ D ++ D R + EL R N+ V+ + ANK
Sbjct: 75 DKIRPLWRHYFQNTQGLIFVVDSNDRD---RVVEARDELHRMLNEDELRDAVLLVFANKQ 131
Query: 126 DLDSQREVP--TEEGEQFSQENGMFYIETSAKTA 157
DL + T++ S +YI+++ T+
Sbjct: 132 DLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 165
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK---FDIWDT 66
+ K++++G GKT++ +F+ + PTIG+ ++ E VK F +WD
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMNEVV-HTSPTIGS-------NVEEIVVKNTHFLMWDI 67
Query: 67 AGQERYHSLAPMYY 80
GQE S YY
Sbjct: 68 GGQESLRSSWNTYY 81
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
+++++G GKT++ + G+ PTIG + ++ + F +WD G ++
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF----NVETVEYKNISFTVWDVGGLDK 58
Query: 72 YHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDL 127
L Y++ D ++ + N A +L++ L + V+ + ANK DL
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 115
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 22 GKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR 81
GKT++ +F G+ D PT+G I +L K +IWD GQ+ S Y+
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLGF----NIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 82 GXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVV--------MALAANKSDL 127
I +D+ +R Q+ QR+ ++V + + ANK DL
Sbjct: 85 STDGL-----IWVVDSADRQRX--QDCQRELQSLLVEERLAGATLLIFANKQDL 131
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K++++G GKT++ +F + PTIG+ +++ +F +WD GQ
Sbjct: 22 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN----NTRFLMWDIGGQ 76
Query: 70 ERYHSLAPMYY 80
E S YY
Sbjct: 77 ESLRSSWNTYY 87
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K++++G GKT++ +F + PTIG+ +++ +F +WD GQ
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN----NTRFLMWDIGGQ 75
Query: 70 ERYHSLAPMYY 80
E S YY
Sbjct: 76 ESLRSSWNTYY 86
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K++++G GKT++ +F + PTIG+ +++ +F +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN----NTRFLMWDIGGQ 70
Query: 70 ERYHSLAPMYY 80
E S YY
Sbjct: 71 ESLRSSWNTYY 81
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K++++G GKT++ +F + PTIG+ +++ +F +WD GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVIN----NTRFLMWDIGGQ 70
Query: 70 ERYHSLAPMYY 80
E S YY
Sbjct: 71 ESLRSSWNTYY 81
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
Length = 190
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTAG 68
+ ++ LG +GKT++ + Q PTIG + I +++ F ++D +G
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS----IEKFKSSSLSFTVFDMSG 76
Query: 69 QERYHSLAPMYYR 81
Q RY +L YY+
Sbjct: 77 QGRYRNLWEHYYK 89
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ ++++LG G GKT++ R G+ PTIG + +++ +KF +WD G
Sbjct: 7 EXRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF----NVETVTYKNLKFQVWDLGGL 61
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMD 96
YY D + D
Sbjct: 62 TSIRPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|1ZB6|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And 1,6-Dihydroxynaphtalene
pdb|1ZCW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gpp
pdb|1ZDW|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Gspp And Flaviolin
pdb|1ZDY|A Chain A, Co-Crystal Structure Of Orf2 An Aromatic Prenyl
Transferase From Streptomyces Sp. Strain Cl190 Complexed
With Taps
Length = 307
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 106 QELQRQGNQIVVMALAANK--SDLDSQREVPTEEGEQFSQ--ENGMFYIETSAKTAQNIN 161
Q+ +G +VV ++A+ + ++LD VPT G+ ++ E G+F T ++
Sbjct: 38 QDTLVEGGSVVVFSMASGRHSTELDFSISVPTSHGDPYATVVEKGLF-----PATGHPVD 92
Query: 162 ELFYEIAKRL 171
+L + K L
Sbjct: 93 DLLADTQKHL 102
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 11/172 (6%)
Query: 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDI 63
P ++ I ++++LG GKTS+ R G T + +L + F++
Sbjct: 18 PADRKI--RVLMLGLDNAGKTSILYRLHLGD-----VVTTVPTVGVNLETLQYKNISFEV 70
Query: 64 WDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAA 122
WD GQ Y+ D ++ D A ++L L + ++ + A
Sbjct: 71 WDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA 130
Query: 123 NKSDL---DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK DL S+ E+ + G +++S+KT + E + +RL
Sbjct: 131 NKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 68/184 (36%), Gaps = 40/184 (21%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ----ILSLSE----ATVKF 61
+ K+ L+GD GKTSL + I F ++ T G T+ I L F
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100
Query: 62 DIWDTAGQERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQ---IVVM 118
WD GQE H+ + D S D+ + ++ +++ G + IVVM
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDS--NKHYWLRHIEKYGGKSPVIVVM 157
Query: 119 ALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK 178
NK D EN + IE + INE F I R R+S
Sbjct: 158 ----NKID-----------------ENPSYNIE-----QKKINERFPAIENRFHRISCKN 191
Query: 179 RSGI 182
G+
Sbjct: 192 GDGV 195
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172
QRE P + NG +Y+ TS T N N+ Y +K LA
Sbjct: 233 QREAPC-----LIKRNGYYYLITSGCTGWNPNQAKYAYSKDLA 270
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF 48
LVLLG G GKT+ LR I G +EPT G +F
Sbjct: 40 LVLLGPSGCGKTT-TLRMIAG----LEEPTEGRIYF 70
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF 48
LVLLG G GKT+ LR I G +EPT G +F
Sbjct: 41 LVLLGPSGCGKTT-TLRMIAG----LEEPTEGRIYF 71
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++LLG GKT+L L+ + + PT G I S+ K ++WD GQ
Sbjct: 17 EVRILLLGLDNAGKTTL-LKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQ 71
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALA-ANKSDL 127
+ Y+ D ++ F + + EL + V L ANK DL
Sbjct: 72 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 130
>pdb|2VUG|A Chain A, The Structure Of An Archaeal Homodimeric Rna Ligase
pdb|2VUG|B Chain B, The Structure Of An Archaeal Homodimeric Rna Ligase
Length = 389
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAK-TAQNINELFYEIAKRLAR 173
++ + R +P EE + ++E G+ ++E K T +++EL Y++ +RL++
Sbjct: 183 EIKTGRSLPVEERLKIAEEYGINHVEVFGKYTKDDVDEL-YQLIERLSK 230
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++LLG GKT+L L+ + + PT G I S+ K ++WD GQ
Sbjct: 16 EVRILLLGLDNAGKTTL-LKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQ 70
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALA-ANKSDL 127
+ Y+ D ++ F + + EL + V L ANK DL
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ +++LLG GKT+L L+ + + PT G I S+ K ++WD GQ
Sbjct: 4 EVRILLLGLDNAGKTTL-LKQLASEDISHITPTQGF----NIKSVQSQGFKLNVWDIGGQ 58
Query: 70 ERYHSLAPMYYRGXXXXXXXYDISNMDTFNRANKLVQELQRQGNQIVVMALA-ANKSDL 127
+ Y+ D ++ F + + EL + V L ANK DL
Sbjct: 59 RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQF 35
I + +L +LGD +GK+SL RF+ G +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY 32
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQF 35
I + +L +LGD +GK+SL RF+ G +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,250,830
Number of Sequences: 62578
Number of extensions: 180504
Number of successful extensions: 1257
Number of sequences better than 100.0: 350
Number of HSP's better than 100.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 366
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)