BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048059
(198 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 154/199 (77%), Gaps = 3/199 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct: 1 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F+IWDTAGQERYHSLAPMYYRGAAAA++V+D++N +F RA K VQELQ QGN +VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMAL 120
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
A NKSDL R+V E+ + ++QENG+F++ETSAKTA N+ E+FYEIA+RL RV P +
Sbjct: 121 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTENP 180
Query: 180 SGINLNPETPER--KGFCC 196
+G+ L +R CC
Sbjct: 181 TGMVLPDRAMDRAVSSSCC 199
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 249 bits (637), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 122/199 (61%), Positives = 150/199 (75%), Gaps = 3/199 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA GNK I AKLVLLGD+G GK+SL LRF+K QF + QE TIGAAFF+Q L++++ATVK
Sbjct: 1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F+IWDTAGQERYHSLAPMYYRGAAAA++V+DI+N +F RA K VQELQ QGN +VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRS 180
A NK+DL R+V EE E ++QEN +F++ETSAKTA N+ ++FYEIAKRL RV P +
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENP 180
Query: 181 GINLNPETPERKGF---CC 196
+ P P CC
Sbjct: 181 TGMVLPNGPGATAVSSSCC 199
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 249 bits (637), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/199 (60%), Positives = 153/199 (76%), Gaps = 3/199 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA + + AKLVLLGDMG GK+SL +RF+KGQF + QE TIGAAFF+ L+++ ATVK
Sbjct: 1 MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F+IWDTAGQERYHSLAPMYYRGAAAA++VYDI++ D+F RA K VQELQ+QGN +VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
A NK+DL+ +R+V EE +++ENG+F++ETSAKTA N+N +FYEIAKRL R P +
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNP 180
Query: 180 SGINLNPETPE--RKGFCC 196
+G+ L E R CC
Sbjct: 181 AGMVLVDRAAEGTRATSCC 199
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 245 bits (626), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 117/199 (58%), Positives = 153/199 (76%), Gaps = 3/199 (1%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
MA + + AKLVLLGDMG GK+SL +RF+KGQF + QE TIGAAFF+ +S++ ATVK
Sbjct: 1 MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVK 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
F+IWDTAGQERYHSLAPMYYRGAAAA++VYDI++ ++ RA K VQELQ+QGN +VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMAL 120
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR- 179
A NK+DL+ +R+V EE +++ENG+F++ETSAKTA N+N++FYEIAKRL R P +
Sbjct: 121 AGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNP 180
Query: 180 SGINL--NPETPERKGFCC 196
+G+ L P + CC
Sbjct: 181 AGMVLEDKPAQGSQAASCC 199
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 236 bits (602), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 149/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8 ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA V+ELQRQ + +
Sbjct: 68 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL S+R V +E + ++ +N + ++ETSAKTA N+NE+F IAK+L + P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
Query: 177 ------PKRS-GINLNPETPERKGFCC 196
P R+ G++L +P + CC
Sbjct: 188 QNAAGAPSRNRGVDLQENSPASRSQCC 214
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 236 bits (601), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 149/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8 ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA V+ELQRQ + +
Sbjct: 68 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL S+R V +E + ++++N + ++ETSAKTA N+NE+F IAK+L + P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
Query: 177 ------PKRS-GINLNPETPERKGFCC 196
P R+ G++L P + CC
Sbjct: 188 QNAAGAPGRNRGVDLQENNPASRSQCC 214
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8 ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA V+ELQRQ + +
Sbjct: 68 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL S+R V +E + ++ +N + ++ETSAKTA N+NE+F IAK+L + P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
Query: 177 ------PKRS-GINLNPETPERKGFCC 196
P R+ G++L P + CC
Sbjct: 188 QNAAGAPGRTRGVDLQESNPASRSQCC 214
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8 ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA V+ELQRQ + +
Sbjct: 68 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL S+R V +E + ++ +N + ++ETSAKTA N+NE+F IAK+L + P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
Query: 177 ------PKRS-GINLNPETPERKGFCC 196
P R+ G++L P + CC
Sbjct: 188 QNATGAPGRNRGVDLQENNPASRSQCC 214
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8 ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA V+ELQRQ + +
Sbjct: 68 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL S+R V +E + ++ +N + ++ETSAKTA N+NE+F IAK+L + P
Sbjct: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
Query: 177 ------PKRS-GINLNPETPERKGFCC 196
P R+ G++L P + CC
Sbjct: 188 QNATGAPGRNRGVDLQENNPASRSQCC 214
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 234 bits (596), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 114/207 (55%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP +KI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 7 ARPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD 66
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N +TF RA V+ELQRQ + +
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSI 126
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL S+R V EE + ++ +N + ++ETSAKTA N+N+LF IAK+L + P
Sbjct: 127 VIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
Query: 177 PKRS-------GINLNPETPERKGFCC 196
S G++L+ +T + K CC
Sbjct: 187 QSTSGAAGRSRGVDLHEQTQQNKSQCC 213
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 230 bits (586), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 109/176 (61%), Positives = 140/176 (79%), Gaps = 1/176 (0%)
Query: 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD 65
NKI Q KLVLLG+ GK+SL LRF++G F D QE TIGAAF Q + L++ TVKF+IWD
Sbjct: 5 NKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWD 64
Query: 66 TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
TAGQERYH+LAPMYYRGA AA+VVYDI + D+F RA K V+ELQRQG+ +V+ALA NK
Sbjct: 65 TAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKL 124
Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG 181
DL ++R+V T E +Q+++ENG+ ++ETSAKT+QN+NELF EIAK+L + +P R G
Sbjct: 125 DLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPK-TPTTRPG 179
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP +KI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 7 ARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD 66
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N +TF RA V+ELQRQ + +
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSI 126
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL ++R V EE + ++ +N + ++ETSAKTA N+N+LF IAK+L + P
Sbjct: 127 VIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
Query: 177 P-------KRSGINLNPETPERKGFCC 196
+ G++L+ ++ + K CC
Sbjct: 187 QNLGGAAGRSRGVDLHEQSQQNKSQCC 213
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP +KI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 7 ARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD 66
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N +TF RA V+ELQRQ + +
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSI 126
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL ++R V EE + ++ +N + ++ETSAKTA N+N+LF IAK+L + P
Sbjct: 127 VIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
Query: 177 P-------KRSGINLNPETPERKGFCC 196
+ G++L+ ++ + K CC
Sbjct: 187 QNLGGAAGRSRGVDLHEQSQQNKSQCC 213
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 229 bits (583), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 148/207 (71%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP +KI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 7 ARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD 66
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N +TF RA V+ELQRQ + +
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSI 126
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL ++R V EE + ++ +N + ++ETSAKTA N+N+LF IAK+L + P
Sbjct: 127 VIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
Query: 177 P-------KRSGINLNPETPERKGFCC 196
+ G++L+ ++ + K CC
Sbjct: 187 QNLGGAAGRSRGVDLHEQSQQNKSQCC 213
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 226 bits (575), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 145/207 (70%), Gaps = 12/207 (5%)
Query: 2 ARP-----GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE 56
ARP GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L +
Sbjct: 8 ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
Query: 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116
TVKF+IWDTAGQERYHSLAPMYYRGA AA+VVYDI+N DTF RA V+ELQRQ + +
Sbjct: 68 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNI 127
Query: 117 VMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
V+ALA NK+DL ++R V ++ + ++ +N + ++ETSAKTA N+NE+F IAK+L + P
Sbjct: 128 VIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
Query: 177 PKRSG-------INLNPETPERKGFCC 196
G ++L + + CC
Sbjct: 188 QNAPGGPGRNRVVDLQESSQPSRSQCC 214
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 222 bits (566), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 143/200 (71%), Gaps = 10/200 (5%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 74
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINL 184
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L + + P+ GIN
Sbjct: 135 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK-NEPQNPGINC 193
Query: 185 N---------PETPERKGFC 195
P P R C
Sbjct: 194 TRGRGVDLTEPTQPTRSQCC 213
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 143/199 (71%), Gaps = 7/199 (3%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 74
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP-------P 177
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L + P
Sbjct: 135 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSA 194
Query: 178 KRSGINLNPETPERKGFCC 196
+ G++L T + CC
Sbjct: 195 RGRGVDLTEPTQPTRSQCC 213
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 143/199 (71%), Gaps = 7/199 (3%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 74
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP-------P 177
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L + P
Sbjct: 135 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSA 194
Query: 178 KRSGINLNPETPERKGFCC 196
+ G++L T + CC
Sbjct: 195 RGRGVDLTEPTQPTRSQCC 213
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 143/199 (71%), Gaps = 7/199 (3%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 74
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP-------P 177
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L + P
Sbjct: 135 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANST 194
Query: 178 KRSGINLNPETPERKGFCC 196
+ G++L T + CC
Sbjct: 195 RGRGVDLTEPTQPTRSQCC 213
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/199 (53%), Positives = 143/199 (71%), Gaps = 7/199 (3%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 74
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP-------P 177
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L + P
Sbjct: 135 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSA 194
Query: 178 KRSGINLNPETPERKGFCC 196
+ G++L T + CC
Sbjct: 195 RGRGVDLTEPTQPTRNQCC 213
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 221 bits (562), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 143/199 (71%), Gaps = 8/199 (4%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GNKI Q KLVLLG+ GK+SL LRF+KGQF++ QE TIGAAF TQ + L + TVKF+IW
Sbjct: 15 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 74
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQERYHSLAPMYYRGA AA+VVYDI+N ++F RA V+ELQRQ + +V+AL+ NK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 134
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP-------P 177
+DL ++R V +E + ++ +N + ++ETSAKT+ N+NE+F IAK+L + P
Sbjct: 135 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSA 194
Query: 178 KRSGINLN-PETPERKGFC 195
+ G++L P P R C
Sbjct: 195 RGRGVDLTEPAQPARSQCC 213
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 211 bits (537), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 97/171 (56%), Positives = 134/171 (78%), Gaps = 1/171 (0%)
Query: 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIWD 65
K ++ KLVLLGD G GK+ + LRF++GQF + T+GA+F +Q ++L ++T VKF+IWD
Sbjct: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWD 89
Query: 66 TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125
TAGQERY +LAP+YYRGA AV+VYDI++ ++F +A V+ELQ+ G+ +VMAL NK+
Sbjct: 90 TAGQERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGSPDIVMALVGNKA 149
Query: 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
DL +REVPTE+G + +++NGMF+IETSAKTA NIN+LF EI KRL R +P
Sbjct: 150 DLHEKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLPRPAP 200
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 180 bits (456), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 124/192 (64%), Gaps = 3/192 (1%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
I + K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IWDTA
Sbjct: 3 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 62
Query: 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQER+HSLAPMYYRG+AAAV+VYDI+ D+F+ K V+EL+ G + +VMA+A NK DL
Sbjct: 63 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDL 122
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR---SGINL 184
REVP ++ +++++ G +ETSAK A NI ELF I++++ + P + GI L
Sbjct: 123 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLGPQENGNSGGIKL 182
Query: 185 NPETPERKGFCC 196
++ + CC
Sbjct: 183 GNQSLQASRRCC 194
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 180 bits (456), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 124/192 (64%), Gaps = 3/192 (1%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
I + K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IWDTA
Sbjct: 3 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 62
Query: 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQER+HSLAPMYYRG+AAAV+VYDI+ D+F+ K V+EL+ G + +VMA+A NK DL
Sbjct: 63 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDL 122
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR---SGINL 184
REVP ++ +++++ G +ETSAK A NI ELF I++++ + P + GI L
Sbjct: 123 SDIREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLDPHENGNSGGIKL 182
Query: 185 NPETPERKGFCC 196
++ + CC
Sbjct: 183 GNQSLQAGRRCC 194
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 128/188 (68%), Gaps = 8/188 (4%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
+ KLVLLG+ GK+S+ LRF+ F + +EPTIGAAF TQ ++++E TVKF+IWDTA
Sbjct: 5 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 64
Query: 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQER+ SLAPMYYR A AA+VVYD++ +F +A V+EL Q ++ +++AL NK D+
Sbjct: 65 GQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDM 124
Query: 128 ---DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSGINL 184
+R+V EEGE+ ++E G+ + ETSAKT +N+N++F I +++ P ++
Sbjct: 125 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI-----PLKTAEEQ 179
Query: 185 NPETPERK 192
N + ER+
Sbjct: 180 NSASNERE 187
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 114/169 (67%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
I + K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IWDTA
Sbjct: 3 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 62
Query: 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQER+HSLAPMYYRG+AAAV+VYDI+ D+F K V+EL+ G + +VMA+A NK DL
Sbjct: 63 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 122
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176
REVP ++ +++++ G +ETSAK A NI ELF I++++ + P
Sbjct: 123 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 171
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 174 bits (440), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 118/171 (69%), Gaps = 3/171 (1%)
Query: 4 PGNKI-IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT-VKF 61
P N + I KLVLLGD GK+SL LRF+K QF D +E TIGAAF TQ L + E T VK
Sbjct: 7 PKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKL 66
Query: 62 DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALA 121
+IWDTAGQERY SLAPMYYR A A+VVYDI+ + +A ++ELQRQ + +V+ALA
Sbjct: 67 EIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALA 126
Query: 122 ANKSDLDSQRE-VPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK DL +R V + E ++ E + + ETSAKTA+N+NELF IAK+L
Sbjct: 127 GNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKL 177
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 116/190 (61%), Gaps = 3/190 (1%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IWDTAGQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
ER+ +LAPMYYRG+AAA++VYDI+ +TF+ V+EL++ G +V+A+A NK DL
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS---PPKRSGINLNP 186
REV + + ++ ++ETSAK A NINELF EI++R+ P G L
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANLPSGGKGFKLRR 184
Query: 187 ETPERKGFCC 196
+ E K CC
Sbjct: 185 QPSEPKRSCC 194
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 117/192 (60%), Gaps = 7/192 (3%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IWDTAGQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
ER+ +LAPMYYRG+AAA++VYDI+ +TF+ V+EL++ G +V+A+A NK DL
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKRSG-----INL 184
REV + + ++ ++ETSAK A NINELF EI++R+ SG +
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDANPASGGKGFKLRR 184
Query: 185 NPETPERKGFCC 196
P P+R CC
Sbjct: 185 QPSEPKRS--CC 194
>sp|P35292|RAB17_MOUSE Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=1 SV=1
Length = 214
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 131/195 (67%), Gaps = 11/195 (5%)
Query: 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70
+KLVLLG GKTSLALR++K F + PT+G AFFT++L L +++K +IWDTAGQE
Sbjct: 20 SKLVLLGSSSVGKTSLALRYMKQDFSNVL-PTVGCAFFTKVLDLGSSSLKLEIWDTAGQE 78
Query: 71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSDLD 128
+Y S+ +Y+RGA AA++VYDI+ D+F++A + +++L++ Q ++VVM L NK+DL
Sbjct: 79 KYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVM-LVGNKTDLG 137
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS-------PPKRSG 181
+REV +EG++F++ + ++ETSAK ++E+F +A+ L + + P +
Sbjct: 138 EEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQELLQRAGDTGSSRPQEGEA 197
Query: 182 INLNPETPERKGFCC 196
+ LN E P R+ CC
Sbjct: 198 VALNQEPPIRQRQCC 212
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 119/192 (61%), Gaps = 7/192 (3%)
Query: 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69
+ K+ LLGD G GK+S+ RF++ F PTIGA+F T+ + KF IWDTAGQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129
E + +LAPMYYRG+AAA++VYDI+ +TF+ V+EL++ G +V+A+A NK DL
Sbjct: 65 EAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL--ARVSPP---KRSGINL 184
REV + + ++ ++ETSAK A NINELF EI++R+ A +PP K +
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSADANPPSGGKGFKLRR 184
Query: 185 NPETPERKGFCC 196
P P+R CC
Sbjct: 185 QPSEPQRS--CC 194
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLVLLG+M TGKT ++ R ++ +F + TIGAAF + + + +K +IWDTAGQER
Sbjct: 51 KLVLLGEMNTGKTCISSRLVRNEF-GPTDSTIGAAFLVKSMVVDNINIKLEIWDTAGQER 109
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
Y SL PMYYRGAAAAVVVYDI+ +TF + V ELQ+ + +++ALA NK DL R
Sbjct: 110 YRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDL-PNR 168
Query: 132 EVPTEEGEQFSQE--NGMFYIETSAKTAQNINELFYEIAKRL 171
EV +E ++ E N +F+ ETSA + QNINELF EI +RL
Sbjct: 169 EVQVDEVNRYISELGNAIFF-ETSAASGQNINELFTEICRRL 209
>sp|Q9H0T7|RAB17_HUMAN Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2
Length = 212
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 127/193 (65%), Gaps = 11/193 (5%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
KLVLLG GK+SLALR++K F PT+G AFFT+++ + ++K +IWDTAGQE+
Sbjct: 21 KLVLLGSGSVGKSSLALRYVKNDFKSIL-PTVGCAFFTKVVDVGATSLKLEIWDTAGQEK 79
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDS 129
YHS+ +Y+RGA AA++VYDI+ D+F +A + +++L+ + + +++VM L NK+DL
Sbjct: 80 YHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVM-LVGNKTDLSQ 138
Query: 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPK------RSGIN 183
+REV +EG++F+ + ++ETSAK ++E+F +A+ L + S + + +
Sbjct: 139 EREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQELLQRSDEEGQALRGDAAVA 198
Query: 184 LNPETPERKGFCC 196
LN + P R+ CC
Sbjct: 199 LN-KGPARQAKCC 210
>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1
Length = 212
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 29/193 (15%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL--------SEATV 59
++Q KLVLLGD GK+S+ RF+K F + +E TIGAAF +Q +++ + +
Sbjct: 1 MLQFKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVI 60
Query: 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVM 118
KF+IWDTAGQERY SLAPMYYR A AA+VVYDI+ D+ +A V EL+ + G+ +V+
Sbjct: 61 KFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVI 120
Query: 119 ALAANKSDL-----------DSQ---------REVPTEEGEQFSQENGMFYIETSAKTAQ 158
L NK DL DS R + TEE +Q++QE G+ + E SAKT +
Sbjct: 121 YLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGE 180
Query: 159 NINELFYEIAKRL 171
+ E+F +I ++L
Sbjct: 181 GVKEIFQDIGEKL 193
>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2
SV=1
Length = 212
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|Q5R6B6|RAB2A_PONAB Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1
Length = 212
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|Q4R4X6|RAB2A_MACFA Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2
SV=1
Length = 212
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1
Length = 212
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1
Length = 212
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|Q90965|RAB2A_CHICK Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1
Length = 212
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 149 bits (377), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 110/163 (67%)
Query: 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68
++AK+VLLG+ GKTSL LR+ + +F D+ E T+ A+F + L++ ++ IWDTAG
Sbjct: 15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAG 74
Query: 69 QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128
QERYH+L P+YYR + A++VYDI++ D+F++A ++EL+R V + + NK DLD
Sbjct: 75 QERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLD 134
Query: 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
QR V ++ ++++ G + TSAK ++ + ELF ++AKR+
Sbjct: 135 RQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRI 177
>sp|P05712|RAB2A_RAT Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=1 SV=1
Length = 212
Score = 149 bits (377), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + T+G F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+S+R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167
>sp|Q5JT25|RAB41_HUMAN Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2
Length = 222
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 117/189 (61%), Gaps = 3/189 (1%)
Query: 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA 67
+ ++KL+ LG+ GKTS+ RF+ F + T+G F ++ + L + V+ +WDTA
Sbjct: 29 LCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTA 88
Query: 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127
GQER+HSL P Y R + AVVVYDI+N+++F +K V+ ++ + VV+ L NK DL
Sbjct: 89 GQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDL 148
Query: 128 DSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL--ARVSPPKRSG-INL 184
D++R+V E+GE+ S+ + +IETSAKT N+ +LF +A L R SPP + G + +
Sbjct: 149 DNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTRTSPPPKEGTVEI 208
Query: 185 NPETPERKG 193
E+ E G
Sbjct: 209 ELESFEESG 217
>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1
Length = 212
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 105/160 (65%)
Query: 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71
K +++GD G GK+ L L+F +F + TIG F +++++ +K IWDTAGQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 67
Query: 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131
+ S+ YYRGAA A++VYDI+ DTFN +++ ++ N +V+ L NKSDL+++R
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARR 127
Query: 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
EV EEGE F++E+G+ ++ETSAKTA N+ E F AK +
Sbjct: 128 EVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEI 167
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 108/167 (64%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+ SL P Y R + AVVVYDI+N+++F + +K + +++ + V++ L NK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+DL +R++ EEGEQ ++E + +IETSAKT N+ +LF +A L
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 174
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 108/167 (64%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+ SL P Y R + AVVVYDI+N+++F + +K + +++ + V++ L NK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+DL +R++ EEGEQ ++E + +IETSAKT N+ +LF +A L
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 174
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 108/167 (64%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+ +W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+ SL P Y R + AVVVYDI+N+++F + +K + +++ + V++ L NK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+DL +R++ EEGEQ ++E + +IETSAKT N+ +LF +A L
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 174
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2
PE=2 SV=1
Length = 205
Score = 147 bits (370), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 110/171 (64%)
Query: 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVK 60
M+ GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + TV+
Sbjct: 1 MSDFGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR 60
Query: 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMAL 120
+WDTAGQER+ SL P Y R + AVVVYDI+N ++F++ +K + +++ + V++ L
Sbjct: 61 LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIML 120
Query: 121 AANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
NK+DL +R+V T+EGE+ ++E + +IETSAK N+ +LF IA L
Sbjct: 121 VGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGAL 171
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 146 bits (369), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 108/167 (64%)
Query: 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIW 64
GN + + KLV LG+ GKTSL RF+ F + + TIG F ++ + L + T++ +W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124
DTAGQER+ SL P Y R +AAAVVVYDI+N+++F + K + +++ + V++ L NK
Sbjct: 68 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171
+DL +R+V EEGE+ ++E + +IETSAK N+ +LF +A L
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,806,227
Number of Sequences: 539616
Number of extensions: 2492414
Number of successful extensions: 12927
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 10976
Number of HSP's gapped (non-prelim): 1202
length of query: 198
length of database: 191,569,459
effective HSP length: 111
effective length of query: 87
effective length of database: 131,672,083
effective search space: 11455471221
effective search space used: 11455471221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)