Query 048059
Match_columns 198
No_of_seqs 157 out of 1656
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.5E-45 3.3E-50 252.9 21.3 175 4-178 3-178 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1E-43 2.2E-48 243.0 20.3 190 8-197 3-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 9.9E-43 2.1E-47 242.3 21.8 173 6-178 8-180 (207)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.7E-42 5.8E-47 236.2 20.4 175 2-176 14-189 (221)
5 KOG0080 GTPase Rab18, small G 100.0 1.8E-40 3.9E-45 220.3 19.4 176 1-176 1-178 (209)
6 KOG0098 GTPase Rab2, small G p 100.0 6E-40 1.3E-44 223.0 18.0 172 7-178 3-174 (216)
7 cd04121 Rab40 Rab40 subfamily. 100.0 1.6E-38 3.4E-43 226.8 24.0 168 8-176 4-171 (189)
8 cd04120 Rab12 Rab12 subfamily. 100.0 2.7E-38 5.8E-43 227.6 24.3 165 11-175 1-166 (202)
9 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.7E-39 8E-44 223.6 18.9 174 5-178 9-182 (222)
10 cd04144 Ras2 Ras2 subfamily. 100.0 9.4E-39 2E-43 229.1 21.7 185 12-197 1-188 (190)
11 KOG0079 GTP-binding protein H- 100.0 1.1E-39 2.4E-44 213.7 13.4 186 9-196 7-198 (198)
12 PLN03110 Rab GTPase; Provision 100.0 1.1E-37 2.5E-42 227.5 25.2 167 8-174 10-176 (216)
13 KOG0394 Ras-related GTPase [Ge 100.0 1.2E-38 2.6E-43 216.2 17.9 170 8-177 7-183 (210)
14 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.2E-37 2.7E-42 225.2 23.4 167 11-177 1-173 (201)
15 KOG0091 GTPase Rab39, small G 100.0 1.9E-38 4.1E-43 211.3 16.5 171 7-177 5-178 (213)
16 cd04110 Rab35 Rab35 subfamily. 100.0 3.7E-37 8E-42 222.3 23.6 187 9-196 5-199 (199)
17 cd04125 RabA_like RabA-like su 100.0 4.4E-37 9.5E-42 220.2 23.7 185 11-195 1-185 (188)
18 cd04112 Rab26 Rab26 subfamily. 100.0 4.3E-37 9.3E-42 220.7 23.0 186 11-196 1-191 (191)
19 cd04122 Rab14 Rab14 subfamily. 100.0 7.1E-37 1.5E-41 215.0 22.3 164 10-173 2-165 (166)
20 PTZ00369 Ras-like protein; Pro 100.0 6.1E-37 1.3E-41 219.6 21.2 185 8-197 3-188 (189)
21 cd04126 Rab20 Rab20 subfamily. 100.0 7.3E-37 1.6E-41 222.5 21.6 181 11-196 1-220 (220)
22 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.9E-37 1.7E-41 217.1 21.2 164 7-172 2-180 (182)
23 KOG0093 GTPase Rab3, small G p 100.0 2E-37 4.2E-42 203.0 15.3 171 7-177 18-188 (193)
24 cd04133 Rop_like Rop subfamily 100.0 1.4E-36 3.1E-41 214.5 20.8 159 11-171 2-172 (176)
25 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.7E-36 8E-41 220.0 23.4 170 6-177 9-193 (232)
26 cd01875 RhoG RhoG subfamily. 100.0 2.5E-36 5.4E-41 216.6 22.0 164 9-174 2-179 (191)
27 cd04111 Rab39 Rab39 subfamily. 100.0 5.7E-36 1.2E-40 217.7 23.8 168 10-177 2-171 (211)
28 cd04109 Rab28 Rab28 subfamily. 100.0 5.3E-36 1.1E-40 218.7 23.5 164 11-174 1-168 (215)
29 cd01867 Rab8_Rab10_Rab13_like 100.0 4.5E-36 9.8E-41 211.1 22.0 165 9-173 2-166 (167)
30 cd04117 Rab15 Rab15 subfamily. 100.0 3.7E-36 8.1E-41 210.3 21.2 160 11-170 1-160 (161)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.5E-36 9.7E-41 211.9 21.4 166 10-176 2-168 (172)
32 PLN03108 Rab family protein; P 100.0 1.4E-35 3E-40 215.6 24.2 169 8-176 4-172 (210)
33 cd01865 Rab3 Rab3 subfamily. 100.0 8.7E-36 1.9E-40 209.3 22.1 163 11-173 2-164 (165)
34 KOG0086 GTPase Rab4, small G p 100.0 9E-37 2E-41 201.2 15.9 169 6-174 5-173 (214)
35 cd04131 Rnd Rnd subfamily. Th 100.0 4.8E-36 1E-40 212.6 20.9 161 10-172 1-176 (178)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.5E-35 3.2E-40 208.2 21.9 163 10-172 2-164 (166)
37 cd04118 Rab24 Rab24 subfamily. 100.0 3.8E-35 8.2E-40 211.0 24.0 185 11-196 1-193 (193)
38 cd04127 Rab27A Rab27a subfamil 100.0 1.7E-35 3.8E-40 210.5 21.9 166 9-174 3-179 (180)
39 PF00071 Ras: Ras family; Int 100.0 1.4E-35 3E-40 207.5 20.9 161 12-172 1-161 (162)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.8E-35 3.9E-40 210.5 21.4 167 11-178 1-172 (182)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 2.1E-35 4.6E-40 207.5 21.6 163 11-173 1-168 (168)
42 cd04132 Rho4_like Rho4-like su 100.0 1.8E-35 3.9E-40 211.6 21.4 179 11-197 1-186 (187)
43 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.3E-35 9.3E-40 213.4 22.9 166 10-177 1-181 (222)
44 KOG0097 GTPase Rab14, small G 100.0 1.8E-35 3.8E-40 193.0 18.5 194 4-197 5-215 (215)
45 KOG0088 GTPase Rab21, small G 100.0 2.2E-36 4.8E-41 200.5 13.8 171 6-176 9-179 (218)
46 cd01868 Rab11_like Rab11-like. 100.0 6.2E-35 1.3E-39 204.8 21.6 163 9-171 2-164 (165)
47 cd01866 Rab2 Rab2 subfamily. 100.0 1.3E-34 2.8E-39 203.9 22.3 165 9-173 3-167 (168)
48 cd04134 Rho3 Rho3 subfamily. 100.0 8.6E-35 1.9E-39 208.4 21.5 164 11-176 1-178 (189)
49 PLN03071 GTP-binding nuclear p 100.0 8.2E-35 1.8E-39 212.7 21.8 165 7-174 10-174 (219)
50 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.5E-35 1.9E-39 205.9 20.5 159 11-171 2-174 (175)
51 cd01864 Rab19 Rab19 subfamily. 100.0 1.4E-34 3E-39 203.1 21.3 162 9-170 2-164 (165)
52 cd04113 Rab4 Rab4 subfamily. 100.0 1.3E-34 2.9E-39 202.3 20.8 160 11-170 1-160 (161)
53 KOG0095 GTPase Rab30, small G 100.0 1.2E-35 2.6E-40 195.3 14.3 171 8-178 5-175 (213)
54 cd04136 Rap_like Rap-like subf 100.0 9.7E-35 2.1E-39 203.3 20.0 161 10-171 1-162 (163)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-34 2.4E-39 203.4 20.2 162 10-172 1-163 (164)
56 cd00877 Ran Ran (Ras-related n 100.0 4E-34 8.7E-39 200.9 21.6 160 11-173 1-160 (166)
57 cd04106 Rab23_lke Rab23-like s 100.0 2.8E-34 6.2E-39 200.8 20.4 159 11-170 1-161 (162)
58 PLN03118 Rab family protein; P 100.0 1.2E-33 2.5E-38 205.9 24.3 169 6-175 10-180 (211)
59 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 5.9E-34 1.3E-38 200.8 21.9 162 12-173 2-166 (170)
60 smart00175 RAB Rab subfamily o 100.0 5.7E-34 1.2E-38 199.6 21.7 163 11-173 1-163 (164)
61 cd04176 Rap2 Rap2 subgroup. T 100.0 4E-34 8.6E-39 200.4 20.3 161 10-171 1-162 (163)
62 cd01871 Rac1_like Rac1-like su 100.0 4E-34 8.6E-39 202.3 20.2 159 10-170 1-173 (174)
63 cd04116 Rab9 Rab9 subfamily. 100.0 9.2E-34 2E-38 199.8 21.6 163 7-170 2-169 (170)
64 cd04140 ARHI_like ARHI subfami 100.0 6.3E-34 1.4E-38 199.8 20.2 158 11-169 2-162 (165)
65 cd01861 Rab6 Rab6 subfamily. 100.0 1.2E-33 2.6E-38 197.5 21.0 160 11-170 1-160 (161)
66 smart00173 RAS Ras subfamily o 100.0 1.2E-33 2.6E-38 198.1 20.3 161 11-172 1-162 (164)
67 cd01860 Rab5_related Rab5-rela 100.0 2.6E-33 5.6E-38 196.1 21.9 162 10-171 1-162 (163)
68 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.8E-33 3.8E-38 198.4 21.0 162 10-171 2-168 (170)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.2E-33 4.9E-38 196.0 20.6 160 10-171 1-161 (162)
70 cd04124 RabL2 RabL2 subfamily. 100.0 3.6E-33 7.7E-38 195.2 21.2 160 11-174 1-160 (161)
71 KOG0081 GTPase Rab27, small G 100.0 7.7E-36 1.7E-40 198.0 7.1 170 8-177 7-186 (219)
72 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.9E-33 8.4E-38 195.4 20.8 161 10-171 2-163 (164)
73 cd04142 RRP22 RRP22 subfamily. 100.0 4E-33 8.7E-38 200.7 20.8 167 11-177 1-179 (198)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.3E-33 1.2E-37 194.8 20.9 160 11-171 1-163 (164)
75 smart00176 RAN Ran (Ras-relate 100.0 3.7E-33 8E-38 200.7 20.3 156 16-174 1-156 (200)
76 cd04123 Rab21 Rab21 subfamily. 100.0 2.2E-32 4.8E-37 191.0 21.9 161 11-171 1-161 (162)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 7.1E-33 1.5E-37 198.7 19.7 158 10-170 2-194 (195)
78 cd01862 Rab7 Rab7 subfamily. 100.0 2.7E-32 5.8E-37 192.5 22.1 165 11-175 1-170 (172)
79 smart00174 RHO Rho (Ras homolo 100.0 9.5E-33 2.1E-37 195.3 19.6 159 13-173 1-173 (174)
80 cd01892 Miro2 Miro2 subfamily. 100.0 8.6E-33 1.9E-37 194.7 19.1 164 8-173 2-167 (169)
81 cd01863 Rab18 Rab18 subfamily. 100.0 3.3E-32 7.1E-37 190.2 21.2 159 11-170 1-160 (161)
82 cd04143 Rhes_like Rhes_like su 100.0 1.7E-32 3.8E-37 203.1 20.6 160 11-171 1-170 (247)
83 cd04177 RSR1 RSR1 subgroup. R 100.0 3.3E-32 7.2E-37 191.6 21.0 162 10-172 1-164 (168)
84 cd04103 Centaurin_gamma Centau 100.0 2.6E-32 5.6E-37 190.0 19.3 153 11-170 1-157 (158)
85 cd04146 RERG_RasL11_like RERG/ 100.0 2.3E-32 4.9E-37 191.9 18.6 160 12-172 1-164 (165)
86 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.9E-32 1.3E-36 191.2 20.4 157 11-169 1-171 (173)
87 cd04135 Tc10 TC10 subfamily. 100.0 6.2E-32 1.3E-36 191.2 20.2 159 11-171 1-173 (174)
88 cd04114 Rab30 Rab30 subfamily. 100.0 1.8E-31 3.8E-36 187.9 22.5 164 8-171 5-168 (169)
89 cd04148 RGK RGK subfamily. Th 100.0 9.3E-32 2E-36 196.8 20.9 163 11-175 1-166 (221)
90 cd00154 Rab Rab family. Rab G 100.0 1E-31 2.3E-36 186.6 20.0 158 11-168 1-158 (159)
91 cd04129 Rho2 Rho2 subfamily. 100.0 2.3E-31 5E-36 190.4 21.7 173 11-197 2-186 (187)
92 KOG0083 GTPase Rab26/Rab37, sm 100.0 9.6E-34 2.1E-38 183.0 6.2 161 15-175 2-163 (192)
93 cd04139 RalA_RalB RalA/RalB su 100.0 5.8E-31 1.3E-35 184.2 20.9 162 11-173 1-163 (164)
94 KOG0395 Ras-related GTPase [Ge 100.0 2.2E-31 4.7E-36 190.1 18.3 167 9-176 2-169 (196)
95 cd04137 RheB Rheb (Ras Homolog 100.0 1.2E-30 2.5E-35 185.6 21.8 165 11-176 2-167 (180)
96 cd00876 Ras Ras family. The R 100.0 7.5E-31 1.6E-35 182.9 19.2 158 12-170 1-159 (160)
97 cd01870 RhoA_like RhoA-like su 100.0 2.4E-30 5.2E-35 183.2 20.8 159 11-171 2-174 (175)
98 cd04147 Ras_dva Ras-dva subfam 100.0 1.2E-30 2.6E-35 188.3 19.4 164 12-176 1-167 (198)
99 cd04149 Arf6 Arf6 subfamily. 100.0 4.9E-31 1.1E-35 185.5 16.5 154 9-169 8-167 (168)
100 PLN00223 ADP-ribosylation fact 100.0 1.4E-30 3E-35 185.2 18.3 160 8-174 15-180 (181)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2E-31 4.4E-36 186.8 13.1 153 12-169 1-163 (164)
102 cd04158 ARD1 ARD1 subfamily. 100.0 2.1E-30 4.5E-35 182.6 18.0 157 12-175 1-164 (169)
103 smart00177 ARF ARF-like small 100.0 3.7E-31 8.1E-36 187.3 14.1 157 8-171 11-173 (175)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.8E-31 8.3E-36 184.5 13.3 152 11-169 1-158 (159)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.4E-30 5.3E-35 184.4 17.2 164 10-176 3-174 (183)
106 KOG0393 Ras-related small GTPa 100.0 5.3E-31 1.1E-35 184.5 13.3 167 8-176 2-183 (198)
107 PTZ00133 ADP-ribosylation fact 100.0 8.4E-31 1.8E-35 186.6 14.2 160 8-174 15-180 (182)
108 PTZ00132 GTP-binding nuclear p 100.0 3.5E-29 7.5E-34 182.9 22.5 167 5-174 4-170 (215)
109 cd00157 Rho Rho (Ras homology) 100.0 2E-29 4.4E-34 177.7 19.9 157 11-169 1-170 (171)
110 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.6E-29 3.5E-34 181.7 19.4 160 11-170 1-198 (202)
111 cd04154 Arl2 Arl2 subfamily. 100.0 9.4E-30 2E-34 179.9 16.8 157 6-169 10-172 (173)
112 cd01893 Miro1 Miro1 subfamily. 100.0 3.8E-29 8.2E-34 175.7 19.0 160 11-173 1-165 (166)
113 PTZ00099 rab6; Provisional 100.0 2.8E-28 6E-33 172.3 20.9 147 33-179 3-149 (176)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.1E-29 2.3E-34 178.6 12.9 153 12-169 1-166 (167)
115 cd04157 Arl6 Arl6 subfamily. 100.0 2.1E-29 4.6E-34 176.1 13.2 152 12-169 1-161 (162)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.2E-28 4.7E-33 173.1 17.0 154 9-169 14-173 (174)
117 KOG4252 GTP-binding protein [S 100.0 6.5E-31 1.4E-35 178.0 3.8 170 7-177 17-186 (246)
118 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.9E-28 4.1E-33 171.0 14.8 152 12-169 1-159 (160)
119 cd00879 Sar1 Sar1 subfamily. 100.0 4.9E-28 1.1E-32 173.6 16.8 156 8-170 17-189 (190)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 5.5E-28 1.2E-32 169.8 16.2 152 12-169 1-166 (167)
121 PLN00023 GTP-binding protein; 100.0 8.6E-28 1.9E-32 180.9 18.0 170 6-175 17-237 (334)
122 cd04151 Arl1 Arl1 subfamily. 100.0 1.7E-28 3.7E-33 171.0 12.8 151 12-169 1-157 (158)
123 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.4E-28 9.4E-33 168.9 14.5 151 12-169 1-157 (158)
124 PF00025 Arf: ADP-ribosylation 100.0 1.1E-27 2.4E-32 169.4 16.5 158 7-171 11-175 (175)
125 KOG0073 GTP-binding ADP-ribosy 100.0 2.4E-27 5.2E-32 158.4 16.8 163 7-174 13-180 (185)
126 smart00178 SAR Sar1p-like memb 100.0 3.4E-27 7.4E-32 168.3 16.8 156 8-170 15-183 (184)
127 cd01890 LepA LepA subfamily. 99.9 2.7E-26 5.8E-31 163.0 16.7 154 12-171 2-176 (179)
128 cd04159 Arl10_like Arl10-like 99.9 1.4E-26 3E-31 160.9 14.5 152 12-169 1-158 (159)
129 cd01897 NOG NOG1 is a nucleola 99.9 5.7E-26 1.2E-30 159.7 15.9 155 12-171 2-167 (168)
130 cd04155 Arl3 Arl3 subfamily. 99.9 7.7E-26 1.7E-30 159.8 16.5 154 6-169 10-172 (173)
131 KOG0070 GTP-binding ADP-ribosy 99.9 2.1E-26 4.6E-31 157.6 12.4 163 7-174 14-180 (181)
132 cd01898 Obg Obg subfamily. Th 99.9 6.7E-26 1.4E-30 159.6 15.5 157 12-170 2-169 (170)
133 TIGR00231 small_GTP small GTP- 99.9 2.9E-25 6.3E-30 153.9 17.8 158 10-168 1-160 (161)
134 COG1100 GTPase SAR1 and relate 99.9 8.8E-25 1.9E-29 160.0 19.8 169 9-177 4-190 (219)
135 cd01878 HflX HflX subfamily. 99.9 1.2E-25 2.7E-30 162.9 14.9 157 8-171 39-204 (204)
136 KOG3883 Ras family small GTPas 99.9 1.1E-24 2.4E-29 144.1 17.3 169 9-177 8-180 (198)
137 cd04171 SelB SelB subfamily. 99.9 2.9E-25 6.3E-30 155.3 15.4 152 11-169 1-163 (164)
138 PRK12299 obgE GTPase CgtA; Rev 99.9 4.8E-25 1E-29 169.4 17.8 162 11-173 159-329 (335)
139 KOG1673 Ras GTPases [General f 99.9 8.7E-26 1.9E-30 149.7 11.4 175 5-180 15-194 (205)
140 TIGR02528 EutP ethanolamine ut 99.9 8.3E-26 1.8E-30 154.7 11.6 134 12-168 2-141 (142)
141 cd00882 Ras_like_GTPase Ras-li 99.9 3.9E-24 8.5E-29 147.0 17.1 153 15-168 1-156 (157)
142 PRK04213 GTP-binding protein; 99.9 3.2E-25 7E-30 160.3 11.3 155 9-176 8-196 (201)
143 cd01879 FeoB Ferrous iron tran 99.9 6.2E-24 1.3E-28 147.7 15.9 148 15-171 1-156 (158)
144 cd01891 TypA_BipA TypA (tyrosi 99.9 2.5E-24 5.4E-29 154.9 13.8 160 11-174 3-190 (194)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.1E-23 2.5E-28 147.9 15.9 157 12-172 2-166 (168)
146 TIGR03156 GTP_HflX GTP-binding 99.9 1.7E-23 3.8E-28 162.0 17.0 153 10-170 189-350 (351)
147 TIGR02729 Obg_CgtA Obg family 99.9 2.1E-23 4.7E-28 160.2 16.9 160 10-171 157-328 (329)
148 PF08477 Miro: Miro-like prote 99.9 1.2E-23 2.5E-28 139.8 13.3 114 12-126 1-119 (119)
149 KOG0071 GTP-binding ADP-ribosy 99.9 5.2E-24 1.1E-28 138.9 10.4 157 9-172 16-178 (180)
150 KOG0075 GTP-binding ADP-ribosy 99.9 5.7E-24 1.2E-28 139.8 10.1 155 9-172 19-182 (186)
151 cd01881 Obg_like The Obg-like 99.9 1.1E-23 2.3E-28 149.1 11.8 155 15-170 1-175 (176)
152 TIGR00436 era GTP-binding prot 99.9 7.7E-23 1.7E-27 154.1 16.7 155 12-174 2-166 (270)
153 PF02421 FeoB_N: Ferrous iron 99.9 2.1E-23 4.6E-28 142.8 12.3 148 11-167 1-156 (156)
154 PRK15494 era GTPase Era; Provi 99.9 6.2E-23 1.3E-27 158.7 15.6 157 8-175 50-219 (339)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.1E-23 2E-27 141.5 14.7 146 11-171 2-156 (157)
156 cd00881 GTP_translation_factor 99.9 1.2E-22 2.7E-27 145.1 14.9 156 12-171 1-186 (189)
157 TIGR01393 lepA GTP-binding pro 99.9 2.1E-22 4.6E-27 165.3 17.8 158 10-173 3-181 (595)
158 PRK03003 GTP-binding protein D 99.9 9.6E-23 2.1E-27 164.3 15.4 154 11-173 39-200 (472)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.8E-22 4E-27 160.5 16.6 153 9-175 202-363 (442)
160 PRK15467 ethanolamine utilizat 99.9 1.7E-22 3.6E-27 140.6 14.2 142 12-176 3-151 (158)
161 PRK05291 trmE tRNA modificatio 99.9 1.9E-22 4.1E-27 161.2 15.5 149 9-173 214-371 (449)
162 cd01889 SelB_euk SelB subfamil 99.9 1.3E-22 2.9E-27 145.7 12.7 159 11-173 1-187 (192)
163 PRK11058 GTPase HflX; Provisio 99.9 4.2E-22 9.2E-27 157.6 16.5 158 11-174 198-364 (426)
164 PRK12297 obgE GTPase CgtA; Rev 99.9 1.7E-21 3.6E-26 153.5 19.1 158 11-175 159-330 (424)
165 PRK03003 GTP-binding protein D 99.9 4.3E-22 9.3E-27 160.5 16.1 162 9-176 210-386 (472)
166 cd01894 EngA1 EngA1 subfamily. 99.9 2.1E-22 4.5E-27 139.8 12.1 146 14-170 1-156 (157)
167 cd01888 eIF2_gamma eIF2-gamma 99.9 2.4E-22 5.2E-27 145.4 12.8 161 11-173 1-200 (203)
168 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 9.4E-23 2E-27 139.6 9.8 171 1-174 1-171 (216)
169 PRK00454 engB GTP-binding prot 99.9 1.4E-21 3E-26 140.7 15.1 160 7-173 21-195 (196)
170 TIGR03594 GTPase_EngA ribosome 99.9 2E-21 4.2E-26 155.6 17.1 161 8-175 170-347 (429)
171 PRK12296 obgE GTPase CgtA; Rev 99.9 2.7E-21 5.8E-26 154.2 17.2 163 10-175 159-343 (500)
172 TIGR00487 IF-2 translation ini 99.9 3.8E-21 8.3E-26 157.3 17.4 153 9-169 86-247 (587)
173 cd04163 Era Era subfamily. Er 99.9 3.9E-21 8.5E-26 134.3 14.9 156 10-170 3-167 (168)
174 PRK12298 obgE GTPase CgtA; Rev 99.9 5.7E-21 1.2E-25 149.7 17.2 162 11-174 160-335 (390)
175 KOG4423 GTP-binding protein-li 99.9 5.4E-24 1.2E-28 145.3 -0.4 176 2-177 17-199 (229)
176 TIGR00475 selB selenocysteine- 99.9 4.3E-21 9.4E-26 157.5 16.5 157 11-176 1-170 (581)
177 TIGR03598 GTPase_YsxC ribosome 99.9 2.2E-21 4.8E-26 137.8 13.0 149 6-161 14-179 (179)
178 PRK00089 era GTPase Era; Revie 99.9 5.2E-21 1.1E-25 145.9 15.8 161 9-174 4-173 (292)
179 cd01895 EngA2 EngA2 subfamily. 99.9 1.9E-20 4.1E-25 131.8 16.7 155 10-170 2-173 (174)
180 KOG0076 GTP-binding ADP-ribosy 99.9 7.6E-22 1.6E-26 133.4 8.8 162 7-174 14-189 (197)
181 cd04105 SR_beta Signal recogni 99.9 1.6E-20 3.6E-25 135.7 15.9 117 12-129 2-123 (203)
182 KOG0074 GTP-binding ADP-ribosy 99.9 1.1E-21 2.5E-26 128.2 8.6 156 6-170 13-177 (185)
183 TIGR00437 feoB ferrous iron tr 99.9 7.8E-21 1.7E-25 156.2 15.3 146 17-171 1-154 (591)
184 CHL00189 infB translation init 99.9 2E-20 4.4E-25 155.3 17.4 157 8-171 242-409 (742)
185 PRK05433 GTP-binding protein L 99.9 3.1E-20 6.8E-25 152.7 18.0 159 10-174 7-186 (600)
186 TIGR03594 GTPase_EngA ribosome 99.9 1.2E-20 2.6E-25 151.1 14.9 152 12-173 1-161 (429)
187 PRK00093 GTP-binding protein D 99.9 2.5E-20 5.4E-25 149.5 16.6 146 11-169 2-159 (435)
188 PRK09554 feoB ferrous iron tra 99.9 3.5E-20 7.6E-25 155.7 18.1 153 10-171 3-167 (772)
189 cd00880 Era_like Era (E. coli 99.9 1.7E-20 3.8E-25 129.9 12.7 151 15-170 1-162 (163)
190 PRK05306 infB translation init 99.9 3.7E-20 8.1E-25 155.0 16.6 154 8-170 288-450 (787)
191 KOG0072 GTP-binding ADP-ribosy 99.8 1.1E-21 2.3E-26 128.7 5.5 161 9-174 17-181 (182)
192 COG1159 Era GTPase [General fu 99.8 4.6E-20 1E-24 135.9 14.6 165 7-176 3-176 (298)
193 PF00009 GTP_EFTU: Elongation 99.8 3.8E-21 8.1E-26 137.6 8.5 160 9-172 2-187 (188)
194 PRK09518 bifunctional cytidyla 99.8 7.2E-20 1.6E-24 154.0 16.8 157 8-173 273-437 (712)
195 TIGR00483 EF-1_alpha translati 99.8 3.5E-20 7.6E-25 147.9 13.9 156 7-164 4-199 (426)
196 PRK00093 GTP-binding protein D 99.8 4.8E-20 1E-24 147.8 14.3 160 9-174 172-346 (435)
197 COG2229 Predicted GTPase [Gene 99.8 3.6E-19 7.8E-24 122.0 15.9 158 5-170 5-176 (187)
198 PRK12317 elongation factor 1-a 99.8 4E-20 8.6E-25 147.6 13.1 156 7-164 3-197 (425)
199 cd01876 YihA_EngB The YihA (En 99.8 1.6E-19 3.5E-24 126.4 13.3 150 12-170 1-169 (170)
200 cd01896 DRG The developmentall 99.8 1.3E-18 2.8E-23 128.2 18.2 151 12-171 2-225 (233)
201 TIGR03680 eif2g_arch translati 99.8 1E-19 2.2E-24 144.2 13.1 163 8-172 2-196 (406)
202 PRK09518 bifunctional cytidyla 99.8 5.2E-19 1.1E-23 148.9 17.9 160 9-176 449-625 (712)
203 TIGR00491 aIF-2 translation in 99.8 3.4E-19 7.3E-24 145.8 16.0 154 11-171 5-215 (590)
204 COG1160 Predicted GTPases [Gen 99.8 1.4E-19 3E-24 140.3 12.8 152 11-172 4-165 (444)
205 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.9E-19 6.4E-24 129.7 12.4 149 12-163 1-185 (208)
206 PRK10218 GTP-binding protein; 99.8 1.2E-18 2.7E-23 142.9 17.2 161 10-174 5-197 (607)
207 TIGR01394 TypA_BipA GTP-bindin 99.8 5.4E-19 1.2E-23 145.1 15.1 160 11-174 2-193 (594)
208 COG0486 ThdF Predicted GTPase 99.8 5.7E-19 1.2E-23 137.2 14.1 155 9-174 216-378 (454)
209 PRK04000 translation initiatio 99.8 5.7E-19 1.2E-23 139.9 14.0 165 7-173 6-202 (411)
210 COG1160 Predicted GTPases [Gen 99.8 1.8E-18 4E-23 134.1 15.4 164 9-177 177-356 (444)
211 COG0218 Predicted GTPase [Gene 99.8 2.7E-18 5.9E-23 120.2 14.7 158 6-173 20-198 (200)
212 PRK10512 selenocysteinyl-tRNA- 99.8 2.4E-18 5.2E-23 141.9 16.4 157 12-172 2-166 (614)
213 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.1E-18 6.8E-23 122.7 14.7 147 10-160 2-171 (195)
214 KOG1707 Predicted Ras related/ 99.8 6.5E-19 1.4E-23 139.3 10.1 167 8-176 7-179 (625)
215 PF10662 PduV-EutP: Ethanolami 99.8 2.5E-18 5.5E-23 115.3 11.2 135 12-168 3-142 (143)
216 PRK04004 translation initiatio 99.8 9.3E-18 2E-22 137.8 16.6 155 10-171 6-217 (586)
217 cd01883 EF1_alpha Eukaryotic e 99.8 9.8E-19 2.1E-23 127.9 9.4 148 12-161 1-194 (219)
218 cd04168 TetM_like Tet(M)-like 99.8 4.9E-18 1.1E-22 125.3 13.0 113 12-128 1-129 (237)
219 TIGR00485 EF-Tu translation el 99.8 6.8E-18 1.5E-22 133.5 14.0 149 6-158 8-179 (394)
220 PRK12736 elongation factor Tu; 99.8 1E-17 2.2E-22 132.3 14.7 162 7-172 9-201 (394)
221 COG2262 HflX GTPases [General 99.8 4.1E-17 9E-22 124.9 15.9 162 9-176 191-360 (411)
222 cd04167 Snu114p Snu114p subfam 99.8 7.9E-18 1.7E-22 122.7 11.5 113 12-128 2-136 (213)
223 PRK12735 elongation factor Tu; 99.8 3.5E-17 7.6E-22 129.4 15.3 162 6-171 8-202 (396)
224 COG0370 FeoB Fe2+ transport sy 99.8 3.9E-17 8.4E-22 132.2 15.3 158 10-176 3-168 (653)
225 cd04104 p47_IIGP_like p47 (47- 99.7 6.4E-17 1.4E-21 116.5 13.4 158 10-175 1-187 (197)
226 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.1E-16 2.4E-21 117.1 14.3 153 12-168 1-219 (224)
227 CHL00071 tufA elongation facto 99.7 1.2E-16 2.5E-21 126.9 14.9 151 6-160 8-181 (409)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 5E-17 1.1E-21 118.5 11.7 164 12-178 1-182 (232)
229 cd04169 RF3 RF3 subfamily. Pe 99.7 2.8E-16 6.1E-21 117.8 15.6 115 11-129 3-137 (267)
230 cd01885 EF2 EF2 (for archaea a 99.7 1.1E-16 2.4E-21 116.6 12.7 113 12-128 2-138 (222)
231 KOG1423 Ras-like GTPase ERA [C 99.7 3.5E-16 7.6E-21 115.4 14.8 170 4-177 66-276 (379)
232 KOG1489 Predicted GTP-binding 99.7 2.1E-16 4.6E-21 117.0 13.6 156 11-170 197-365 (366)
233 COG1084 Predicted GTPase [Gene 99.7 3.3E-16 7.1E-21 116.8 14.5 161 8-174 166-338 (346)
234 PLN00043 elongation factor 1-a 99.7 3.2E-16 6.9E-21 125.2 15.4 153 7-162 4-203 (447)
235 cd01850 CDC_Septin CDC/Septin. 99.7 3.4E-16 7.4E-21 117.9 14.1 143 9-156 3-186 (276)
236 PRK05124 cysN sulfate adenylyl 99.7 2.8E-16 6.1E-21 126.5 14.3 154 7-163 24-216 (474)
237 PRK00049 elongation factor Tu; 99.7 4.2E-16 9.2E-21 123.2 14.6 160 7-170 9-201 (396)
238 TIGR02034 CysN sulfate adenyly 99.7 6.2E-16 1.3E-20 122.7 13.9 149 11-162 1-187 (406)
239 PLN03127 Elongation factor Tu; 99.7 6.9E-16 1.5E-20 123.2 14.2 162 6-171 57-251 (447)
240 PRK00741 prfC peptide chain re 99.7 1.1E-15 2.5E-20 124.1 15.5 117 8-128 8-144 (526)
241 cd04170 EF-G_bact Elongation f 99.7 1.2E-16 2.7E-21 120.3 9.1 150 12-167 1-168 (268)
242 PLN03126 Elongation factor Tu; 99.7 7.5E-16 1.6E-20 123.7 12.9 149 7-159 78-249 (478)
243 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.9E-15 6.2E-20 107.9 14.7 164 11-176 1-188 (196)
244 PTZ00327 eukaryotic translatio 99.7 7.2E-16 1.6E-20 123.1 12.2 166 6-173 30-234 (460)
245 cd01886 EF-G Elongation factor 99.7 6.5E-16 1.4E-20 116.0 11.1 114 12-129 1-130 (270)
246 PRK05506 bifunctional sulfate 99.7 1.4E-15 3E-20 126.9 14.0 153 7-162 21-211 (632)
247 PTZ00141 elongation factor 1- 99.7 3E-15 6.5E-20 119.8 14.9 154 7-162 4-203 (446)
248 KOG0077 Vesicle coat complex C 99.7 4.6E-16 1E-20 104.7 8.6 155 9-170 19-191 (193)
249 cd01899 Ygr210 Ygr210 subfamil 99.7 2.5E-15 5.5E-20 114.9 13.4 81 13-93 1-110 (318)
250 PRK13351 elongation factor G; 99.7 1.6E-15 3.4E-20 127.8 13.3 117 8-128 6-138 (687)
251 PF01926 MMR_HSR1: 50S ribosom 99.7 1.9E-15 4.2E-20 99.7 11.0 106 12-124 1-116 (116)
252 KOG1191 Mitochondrial GTPase [ 99.7 9.2E-16 2E-20 119.6 10.6 169 8-178 266-456 (531)
253 KOG0462 Elongation factor-type 99.7 3.3E-15 7.2E-20 117.8 13.4 167 8-178 58-241 (650)
254 PF09439 SRPRB: Signal recogni 99.6 2.6E-16 5.5E-21 110.2 6.1 117 10-130 3-127 (181)
255 COG0532 InfB Translation initi 99.6 2E-14 4.2E-19 113.7 15.2 153 11-173 6-171 (509)
256 COG3596 Predicted GTPase [Gene 99.6 3.3E-15 7.2E-20 109.1 9.3 164 7-173 36-223 (296)
257 COG0536 Obg Predicted GTPase [ 99.6 1.7E-14 3.6E-19 108.3 12.8 164 11-175 160-336 (369)
258 TIGR00484 EF-G translation elo 99.6 1.8E-14 3.9E-19 121.3 14.5 143 9-157 9-171 (689)
259 KOG3905 Dynein light intermedi 99.6 2.2E-14 4.8E-19 106.9 12.8 161 10-173 52-291 (473)
260 COG0481 LepA Membrane GTPase L 99.6 2.6E-14 5.7E-19 111.2 13.7 164 8-177 7-191 (603)
261 PRK12739 elongation factor G; 99.6 5E-14 1.1E-18 118.6 16.6 117 8-128 6-138 (691)
262 COG1163 DRG Predicted GTPase [ 99.6 7.6E-14 1.6E-18 104.1 15.0 154 10-172 63-289 (365)
263 KOG0090 Signal recognition par 99.6 2.2E-14 4.7E-19 100.8 11.1 155 10-170 38-237 (238)
264 TIGR00503 prfC peptide chain r 99.6 2.8E-14 6E-19 116.1 13.3 118 8-129 9-146 (527)
265 COG5256 TEF1 Translation elong 99.6 2.9E-14 6.2E-19 109.5 11.7 155 7-163 4-202 (428)
266 PRK09866 hypothetical protein; 99.6 1.7E-13 3.7E-18 111.2 16.2 108 60-169 231-350 (741)
267 PRK09602 translation-associate 99.6 1.9E-13 4.1E-18 107.6 15.3 83 11-93 2-113 (396)
268 KOG1145 Mitochondrial translat 99.6 2.9E-13 6.4E-18 107.0 15.3 158 9-176 152-322 (683)
269 cd00066 G-alpha G protein alph 99.6 2.6E-13 5.6E-18 104.4 14.8 119 57-175 159-314 (317)
270 TIGR00101 ureG urease accessor 99.5 2E-13 4.2E-18 98.3 11.7 101 59-172 92-196 (199)
271 PRK00007 elongation factor G; 99.5 3E-13 6.5E-18 113.9 14.3 144 8-157 8-171 (693)
272 smart00010 small_GTPase Small 99.5 2.8E-13 6E-18 90.2 11.4 114 11-161 1-115 (124)
273 PRK12740 elongation factor G; 99.5 3E-13 6.5E-18 113.9 14.1 109 16-128 1-125 (668)
274 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.7E-13 1E-17 101.0 13.1 123 6-129 34-167 (313)
275 TIGR00157 ribosome small subun 99.5 1.1E-13 2.4E-18 102.6 9.3 95 70-168 24-119 (245)
276 smart00275 G_alpha G protein a 99.5 1.4E-12 3.1E-17 101.1 15.7 119 57-175 182-337 (342)
277 KOG1707 Predicted Ras related/ 99.5 1.5E-12 3.2E-17 103.7 14.9 165 6-175 421-586 (625)
278 PF05783 DLIC: Dynein light in 99.5 1.3E-12 2.9E-17 104.3 14.6 165 9-176 24-268 (472)
279 TIGR00490 aEF-2 translation el 99.5 2E-13 4.2E-18 115.4 10.2 117 8-128 17-151 (720)
280 cd01853 Toc34_like Toc34-like 99.5 9.6E-13 2.1E-17 97.6 12.5 121 7-128 28-162 (249)
281 PF04548 AIG1: AIG1 family; I 99.5 7E-13 1.5E-17 96.5 11.6 162 11-176 1-190 (212)
282 COG4917 EutP Ethanolamine util 99.5 2.7E-13 5.8E-18 87.4 7.5 136 12-169 3-143 (148)
283 PRK14845 translation initiatio 99.5 2.4E-12 5.1E-17 111.0 15.6 104 61-171 528-672 (1049)
284 COG5257 GCD11 Translation init 99.4 3.2E-13 6.8E-18 100.6 7.8 175 1-177 1-207 (415)
285 COG1217 TypA Predicted membran 99.4 2.4E-12 5.2E-17 100.2 12.5 163 10-176 5-199 (603)
286 KOG0461 Selenocysteine-specifi 99.4 4.1E-12 8.9E-17 95.7 12.8 166 8-177 5-198 (522)
287 KOG1490 GTP-binding protein CR 99.4 1E-12 2.2E-17 103.0 9.8 168 4-174 162-343 (620)
288 PRK13768 GTPase; Provisional 99.4 1E-12 2.2E-17 98.0 9.3 110 60-172 98-247 (253)
289 PTZ00258 GTP-binding protein; 99.4 6.9E-12 1.5E-16 98.0 13.8 85 8-92 19-125 (390)
290 KOG1532 GTPase XAB1, interacts 99.4 5.4E-12 1.2E-16 92.3 10.8 114 59-174 116-266 (366)
291 TIGR00073 hypB hydrogenase acc 99.4 7.5E-12 1.6E-16 90.9 11.3 151 9-170 21-205 (207)
292 PF03029 ATP_bind_1: Conserved 99.4 6.7E-13 1.5E-17 97.9 5.8 112 60-171 92-236 (238)
293 cd01882 BMS1 Bms1. Bms1 is an 99.4 2.1E-11 4.5E-16 89.6 12.8 140 7-158 36-182 (225)
294 COG0378 HypB Ni2+-binding GTPa 99.3 7E-12 1.5E-16 87.6 8.7 149 10-171 13-200 (202)
295 PRK09435 membrane ATPase/prote 99.3 3.9E-11 8.5E-16 92.2 13.6 108 58-176 148-264 (332)
296 KOG0082 G-protein alpha subuni 99.3 5.9E-11 1.3E-15 90.8 14.2 123 54-176 190-348 (354)
297 PRK07560 elongation factor EF- 99.3 2E-11 4.4E-16 103.6 12.6 117 8-128 18-152 (731)
298 COG2895 CysN GTPases - Sulfate 99.3 4.2E-11 9E-16 90.5 12.6 152 8-162 4-193 (431)
299 PF05049 IIGP: Interferon-indu 99.3 2.2E-11 4.8E-16 94.3 11.5 160 8-175 33-221 (376)
300 PRK09601 GTP-binding protein Y 99.3 1.2E-10 2.6E-15 90.2 15.0 83 11-93 3-107 (364)
301 PLN00116 translation elongatio 99.3 1E-11 2.3E-16 106.6 9.9 118 7-128 16-163 (843)
302 PTZ00416 elongation factor 2; 99.3 1.1E-11 2.4E-16 106.3 9.9 117 8-128 17-157 (836)
303 PF00350 Dynamin_N: Dynamin fa 99.3 2.9E-11 6.2E-16 84.9 9.4 63 60-125 102-168 (168)
304 KOG3886 GTP-binding protein [S 99.3 9.7E-12 2.1E-16 88.7 6.9 146 10-157 4-164 (295)
305 KOG0458 Elongation factor 1 al 99.3 1.1E-10 2.4E-15 93.2 13.1 154 7-163 174-373 (603)
306 TIGR02836 spore_IV_A stage IV 99.3 7.3E-10 1.6E-14 86.3 16.2 154 10-168 17-233 (492)
307 cd01900 YchF YchF subfamily. 99.2 1.4E-10 3.1E-15 87.0 11.4 80 13-92 1-102 (274)
308 KOG1144 Translation initiation 99.2 1E-10 2.2E-15 95.8 11.2 161 10-177 475-692 (1064)
309 TIGR00750 lao LAO/AO transport 99.2 8.1E-11 1.7E-15 90.1 10.1 104 58-172 126-238 (300)
310 KOG0410 Predicted GTP binding 99.2 2E-11 4.3E-16 91.3 6.3 156 8-176 176-345 (410)
311 COG0480 FusA Translation elong 99.2 2.9E-10 6.2E-15 94.9 11.9 125 1-129 1-142 (697)
312 TIGR00993 3a0901s04IAP86 chlor 99.2 6.2E-10 1.3E-14 91.2 13.1 121 8-129 116-250 (763)
313 KOG0705 GTPase-activating prot 99.2 1.5E-10 3.2E-15 91.9 8.7 163 8-177 28-194 (749)
314 PF00735 Septin: Septin; Inte 99.2 2.1E-09 4.6E-14 81.2 14.0 141 9-154 3-183 (281)
315 PRK10463 hydrogenase nickel in 99.2 1.6E-10 3.4E-15 86.8 7.8 54 117-170 232-287 (290)
316 COG3276 SelB Selenocysteine-sp 99.2 7.7E-10 1.7E-14 86.1 11.7 157 12-172 2-162 (447)
317 smart00053 DYNc Dynamin, GTPas 99.1 1.1E-09 2.3E-14 80.8 11.8 68 59-129 125-206 (240)
318 PF00503 G-alpha: G-protein al 99.1 2E-09 4.2E-14 85.5 12.5 114 57-170 234-388 (389)
319 COG0012 Predicted GTPase, prob 99.1 8.2E-09 1.8E-13 79.2 14.3 84 10-93 2-108 (372)
320 KOG3887 Predicted small GTPase 99.1 1.5E-09 3.2E-14 78.4 9.4 164 11-177 28-207 (347)
321 cd01855 YqeH YqeH. YqeH is an 99.1 1.5E-09 3.2E-14 77.8 8.9 94 72-172 24-125 (190)
322 COG5019 CDC3 Septin family pro 99.0 5.9E-09 1.3E-13 79.6 11.8 139 8-151 21-200 (373)
323 COG0050 TufB GTPases - transla 99.0 4.8E-09 1E-13 77.8 10.4 147 7-156 9-177 (394)
324 KOG1486 GTP-binding protein DR 99.0 4.3E-08 9.4E-13 71.3 14.1 153 10-171 62-287 (364)
325 PRK12289 GTPase RsgA; Reviewed 99.0 2.7E-09 5.8E-14 83.0 8.3 94 72-170 79-173 (352)
326 cd01859 MJ1464 MJ1464. This f 99.0 1.7E-09 3.8E-14 75.0 6.5 95 72-172 2-96 (156)
327 cd01854 YjeQ_engC YjeQ/EngC. 98.9 5.3E-09 1.2E-13 79.6 8.5 88 77-169 73-161 (287)
328 KOG0468 U5 snRNP-specific prot 98.9 8.8E-09 1.9E-13 83.9 10.1 117 7-127 125-261 (971)
329 PRK00098 GTPase RsgA; Reviewed 98.9 5.6E-09 1.2E-13 79.9 8.0 86 79-168 77-163 (298)
330 KOG1547 Septin CDC10 and relat 98.9 3.3E-08 7.1E-13 71.5 10.9 155 9-168 45-239 (336)
331 COG4108 PrfC Peptide chain rel 98.9 3.3E-08 7.3E-13 77.1 11.3 136 8-149 10-165 (528)
332 KOG2655 Septin family protein 98.9 4.8E-08 1E-12 75.2 12.0 144 9-157 20-202 (366)
333 PRK12288 GTPase RsgA; Reviewed 98.9 1.2E-08 2.6E-13 79.3 9.0 88 80-170 118-206 (347)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6E-09 1.3E-13 71.0 6.4 54 12-69 85-138 (141)
335 cd01858 NGP_1 NGP-1. Autoanti 98.8 1.3E-08 2.7E-13 70.7 7.3 56 9-68 101-156 (157)
336 KOG0448 Mitofusin 1 GTPase, in 98.8 8.2E-08 1.8E-12 78.5 12.7 145 8-156 107-310 (749)
337 PF03308 ArgK: ArgK protein; 98.8 9.2E-10 2E-14 80.7 1.3 152 9-172 28-230 (266)
338 COG5258 GTPBP1 GTPase [General 98.8 2.5E-08 5.4E-13 76.6 8.9 159 7-169 114-336 (527)
339 cd04178 Nucleostemin_like Nucl 98.8 1.3E-08 2.8E-13 71.6 6.7 56 9-68 116-171 (172)
340 COG1703 ArgK Putative periplas 98.8 5.9E-08 1.3E-12 72.4 9.9 107 59-176 144-258 (323)
341 TIGR03597 GTPase_YqeH ribosome 98.8 2.6E-08 5.7E-13 78.1 8.6 95 69-170 50-151 (360)
342 KOG1143 Predicted translation 98.8 3.5E-08 7.5E-13 75.7 8.2 156 7-166 164-382 (591)
343 KOG1954 Endocytosis/signaling 98.8 7.9E-08 1.7E-12 73.6 9.3 117 10-129 58-225 (532)
344 cd01856 YlqF YlqF. Proteins o 98.7 3.7E-08 7.9E-13 69.4 6.6 57 9-69 114-170 (171)
345 cd01855 YqeH YqeH. YqeH is an 98.7 3.3E-08 7.2E-13 70.8 6.1 57 10-69 127-190 (190)
346 cd01859 MJ1464 MJ1464. This f 98.7 8.1E-08 1.8E-12 66.6 7.0 57 9-69 100-156 (156)
347 COG5192 BMS1 GTP-binding prote 98.7 3.4E-07 7.4E-12 73.8 11.2 139 6-156 65-210 (1077)
348 KOG2486 Predicted GTPase [Gene 98.7 6.6E-08 1.4E-12 71.3 6.5 153 7-168 133-312 (320)
349 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.1E-07 2.3E-12 72.6 7.8 59 8-70 119-177 (287)
350 TIGR03596 GTPase_YlqF ribosome 98.7 8E-08 1.7E-12 72.8 7.1 57 9-69 117-173 (276)
351 COG1161 Predicted GTPases [Gen 98.6 7.3E-08 1.6E-12 74.4 6.5 59 8-70 130-188 (322)
352 PF03193 DUF258: Protein of un 98.6 4.1E-08 8.9E-13 67.7 4.4 59 11-72 36-100 (161)
353 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.5E-07 3.2E-12 65.4 7.1 90 79-171 5-94 (157)
354 KOG0464 Elongation factor G [T 98.6 4.6E-08 9.9E-13 76.0 4.8 134 9-148 36-185 (753)
355 TIGR03348 VI_IcmF type VI secr 98.6 3.6E-07 7.9E-12 81.6 11.0 111 13-128 114-256 (1169)
356 cd01849 YlqF_related_GTPase Yl 98.6 2.2E-07 4.8E-12 64.3 7.6 85 84-172 1-85 (155)
357 KOG0085 G protein subunit Galp 98.6 1.3E-07 2.9E-12 68.1 6.3 121 56-176 196-353 (359)
358 cd01851 GBP Guanylate-binding 98.6 1.5E-06 3.3E-11 63.8 11.6 117 9-127 6-146 (224)
359 cd01849 YlqF_related_GTPase Yl 98.6 2.8E-07 6E-12 63.9 6.9 57 9-69 99-155 (155)
360 KOG0460 Mitochondrial translat 98.5 7.1E-07 1.5E-11 67.8 8.7 147 6-155 50-218 (449)
361 TIGR00092 GTP-binding protein 98.5 5.4E-07 1.2E-11 70.2 8.2 81 11-93 3-108 (368)
362 PRK10416 signal recognition pa 98.5 8E-07 1.7E-11 68.5 8.9 142 10-164 114-302 (318)
363 KOG0466 Translation initiation 98.5 4.5E-08 9.8E-13 73.1 1.7 166 6-177 34-246 (466)
364 KOG0467 Translation elongation 98.5 7.8E-07 1.7E-11 73.7 8.3 117 6-126 5-135 (887)
365 cd01856 YlqF YlqF. Proteins o 98.5 4.4E-07 9.5E-12 63.9 6.1 94 71-172 8-101 (171)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.5E-07 1.4E-11 61.0 6.5 76 78-159 7-84 (141)
367 PRK12288 GTPase RsgA; Reviewed 98.4 5.7E-07 1.2E-11 70.1 6.7 57 13-72 208-270 (347)
368 COG1618 Predicted nucleotide k 98.4 3.2E-05 7E-10 52.9 14.0 145 10-172 5-176 (179)
369 TIGR03596 GTPase_YlqF ribosome 98.4 1.1E-06 2.4E-11 66.6 7.9 102 66-175 4-106 (276)
370 KOG4273 Uncharacterized conser 98.4 4.9E-06 1.1E-10 60.8 10.6 158 11-172 5-222 (418)
371 TIGR00064 ftsY signal recognit 98.4 4.1E-06 8.8E-11 63.3 10.5 95 58-165 154-261 (272)
372 KOG0099 G protein subunit Galp 98.4 4.2E-06 9E-11 61.5 9.9 119 57-175 200-372 (379)
373 KOG0463 GTP-binding protein GP 98.4 2.5E-06 5.4E-11 65.8 8.9 154 8-166 131-352 (641)
374 PRK13796 GTPase YqeH; Provisio 98.4 6.4E-07 1.4E-11 70.5 5.9 58 10-70 160-221 (365)
375 COG1162 Predicted GTPases [Gen 98.4 7E-07 1.5E-11 67.3 5.6 58 12-72 166-229 (301)
376 PRK12289 GTPase RsgA; Reviewed 98.4 7.6E-07 1.7E-11 69.4 6.0 56 12-71 174-236 (352)
377 TIGR03597 GTPase_YqeH ribosome 98.3 1.4E-06 3E-11 68.5 6.8 57 11-70 155-215 (360)
378 PRK14974 cell division protein 98.3 8.7E-07 1.9E-11 68.6 5.5 94 59-165 223-323 (336)
379 PF09547 Spore_IV_A: Stage IV 98.3 4.7E-05 1E-09 60.0 14.6 154 10-168 17-233 (492)
380 PRK13796 GTPase YqeH; Provisio 98.3 4.6E-06 9.9E-11 65.7 9.2 83 81-170 67-157 (365)
381 TIGR00157 ribosome small subun 98.3 1.8E-06 3.8E-11 64.3 6.2 57 11-71 121-183 (245)
382 PRK01889 GTPase RsgA; Reviewed 98.3 4E-06 8.6E-11 65.8 8.3 83 80-168 110-193 (356)
383 PRK09563 rbgA GTPase YlqF; Rev 98.3 3E-06 6.6E-11 64.6 7.1 101 66-174 7-108 (287)
384 TIGR01425 SRP54_euk signal rec 98.3 1E-05 2.2E-10 64.5 10.0 65 58-128 182-252 (429)
385 KOG1491 Predicted GTP-binding 98.3 4.7E-06 1E-10 63.4 7.6 85 9-93 19-125 (391)
386 COG3523 IcmF Type VI protein s 98.2 9.7E-06 2.1E-10 71.4 9.4 111 13-129 128-270 (1188)
387 cd03112 CobW_like The function 98.2 1.1E-05 2.3E-10 56.1 7.8 21 13-33 3-23 (158)
388 cd01854 YjeQ_engC YjeQ/EngC. 98.2 5.3E-06 1.1E-10 63.3 6.6 59 11-72 162-226 (287)
389 KOG3859 Septins (P-loop GTPase 98.2 1.2E-05 2.6E-10 59.7 7.8 63 7-69 39-105 (406)
390 PRK13695 putative NTPase; Prov 98.2 8.5E-05 1.8E-09 52.4 12.0 48 114-171 125-172 (174)
391 PRK00098 GTPase RsgA; Reviewed 98.1 5.6E-06 1.2E-10 63.5 6.0 58 11-71 165-228 (298)
392 PRK14722 flhF flagellar biosyn 98.1 3.3E-05 7.2E-10 60.6 9.6 141 10-154 137-316 (374)
393 PF00448 SRP54: SRP54-type pro 98.1 2.9E-05 6.3E-10 55.8 8.6 84 59-153 84-174 (196)
394 KOG0447 Dynamin-like GTP bindi 98.1 0.00021 4.6E-09 58.0 13.6 82 60-144 413-508 (980)
395 PRK14721 flhF flagellar biosyn 98.0 2.3E-05 4.9E-10 62.5 7.8 134 10-154 191-361 (420)
396 cd03115 SRP The signal recogni 98.0 7.3E-05 1.6E-09 52.6 9.6 84 58-151 82-171 (173)
397 KOG0465 Mitochondrial elongati 98.0 9.6E-06 2.1E-10 66.0 5.5 119 9-131 38-172 (721)
398 KOG1424 Predicted GTP-binding 98.0 9.8E-06 2.1E-10 64.8 5.3 57 10-70 314-370 (562)
399 COG1162 Predicted GTPases [Gen 98.0 9.1E-05 2E-09 56.0 9.7 95 73-170 70-165 (301)
400 PF03266 NTPase_1: NTPase; In 98.0 3.4E-05 7.4E-10 54.1 6.8 135 12-160 1-163 (168)
401 PRK12727 flagellar biosynthesi 98.0 0.00021 4.6E-09 58.4 12.0 135 10-154 350-519 (559)
402 PRK10867 signal recognition pa 97.9 8.1E-05 1.8E-09 59.7 8.9 86 59-154 184-275 (433)
403 PRK11889 flhF flagellar biosyn 97.9 0.00016 3.4E-09 57.1 10.2 134 10-153 241-411 (436)
404 PRK00771 signal recognition pa 97.9 2.3E-05 5.1E-10 62.9 5.7 86 59-154 176-267 (437)
405 KOG1487 GTP-binding protein DR 97.9 0.00016 3.4E-09 53.4 9.3 86 10-97 59-151 (358)
406 TIGR00959 ffh signal recogniti 97.9 5.1E-05 1.1E-09 60.8 7.1 86 59-154 183-274 (428)
407 PRK05703 flhF flagellar biosyn 97.9 0.0003 6.5E-09 56.6 11.4 86 59-154 300-392 (424)
408 COG1419 FlhF Flagellar GTP-bin 97.9 0.00014 3.1E-09 57.1 9.1 156 10-176 203-398 (407)
409 COG3640 CooC CO dehydrogenase 97.8 0.00036 7.9E-09 50.8 9.8 77 60-148 135-212 (255)
410 cd02038 FleN-like FleN is a me 97.8 0.00013 2.8E-09 49.5 7.3 106 14-127 4-109 (139)
411 cd02042 ParA ParA and ParB of 97.8 0.00019 4E-09 46.0 7.6 82 13-106 2-84 (104)
412 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00023 4.9E-09 44.6 7.9 96 13-123 2-99 (99)
413 cd03114 ArgK-like The function 97.8 0.00011 2.3E-09 50.5 6.5 33 58-93 91-123 (148)
414 KOG2484 GTPase [General functi 97.8 2.4E-05 5.3E-10 60.7 3.7 58 8-69 250-307 (435)
415 PF13207 AAA_17: AAA domain; P 97.8 2.7E-05 5.8E-10 51.4 3.4 22 12-33 1-22 (121)
416 cd00009 AAA The AAA+ (ATPases 97.8 0.00033 7.3E-09 47.1 8.8 25 10-34 19-43 (151)
417 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00021 4.5E-09 40.1 5.8 44 82-126 13-58 (58)
418 PRK14723 flhF flagellar biosyn 97.7 0.00062 1.3E-08 58.1 11.3 88 59-154 264-358 (767)
419 PRK08118 topology modulation p 97.7 3.3E-05 7.2E-10 54.1 3.3 22 12-33 3-24 (167)
420 COG0563 Adk Adenylate kinase a 97.7 3.5E-05 7.5E-10 54.5 3.1 23 11-33 1-23 (178)
421 KOG2485 Conserved ATP/GTP bind 97.7 9.5E-05 2.1E-09 55.8 5.5 62 7-69 140-206 (335)
422 PRK12726 flagellar biosynthesi 97.7 7.7E-05 1.7E-09 58.5 4.9 87 58-154 285-377 (407)
423 PF11111 CENP-M: Centromere pr 97.7 0.0056 1.2E-07 42.6 13.4 143 6-172 11-153 (176)
424 cd03111 CpaE_like This protein 97.7 0.00031 6.7E-09 45.3 6.9 100 16-124 6-106 (106)
425 PRK12724 flagellar biosynthesi 97.7 0.0002 4.3E-09 57.0 7.1 135 10-154 223-394 (432)
426 PRK07261 topology modulation p 97.6 4.7E-05 1E-09 53.6 3.3 21 12-32 2-22 (171)
427 PF13671 AAA_33: AAA domain; P 97.6 4.5E-05 9.7E-10 51.8 3.1 20 13-32 2-21 (143)
428 PF13555 AAA_29: P-loop contai 97.6 6.2E-05 1.4E-09 43.3 3.0 21 12-32 25-45 (62)
429 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00081 1.8E-08 47.6 9.0 88 11-109 26-118 (177)
430 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00044 9.5E-09 46.4 7.1 24 11-34 23-46 (133)
431 KOG0459 Polypeptide release fa 97.6 0.00019 4.2E-09 56.1 5.7 158 7-165 76-279 (501)
432 PRK12723 flagellar biosynthesi 97.5 0.0014 3.1E-08 52.0 10.6 134 10-153 174-346 (388)
433 PRK06731 flhF flagellar biosyn 97.5 0.00072 1.6E-08 51.0 8.3 134 11-154 76-246 (270)
434 PRK06995 flhF flagellar biosyn 97.5 0.0019 4.1E-08 52.6 10.9 22 11-32 257-278 (484)
435 PF02367 UPF0079: Uncharacteri 97.5 0.00045 9.7E-09 45.7 6.0 24 11-34 16-39 (123)
436 KOG0780 Signal recognition par 97.5 4.3E-05 9.4E-10 59.3 1.4 46 57-102 182-233 (483)
437 cd02019 NK Nucleoside/nucleoti 97.5 0.00013 2.9E-09 43.1 3.1 21 13-33 2-22 (69)
438 cd02036 MinD Bacterial cell di 97.5 0.0042 9.2E-08 43.6 11.3 84 60-150 64-147 (179)
439 COG1126 GlnQ ABC-type polar am 97.4 0.00011 2.4E-09 52.9 2.9 23 11-33 29-51 (240)
440 KOG2423 Nucleolar GTPase [Gene 97.4 9.8E-05 2.1E-09 57.6 2.2 86 5-97 302-389 (572)
441 KOG0469 Elongation factor 2 [T 97.4 0.00064 1.4E-08 54.8 6.8 114 10-127 19-162 (842)
442 COG0802 Predicted ATPase or ki 97.4 0.0011 2.4E-08 45.0 7.0 25 11-35 26-50 (149)
443 PRK13851 type IV secretion sys 97.4 0.00074 1.6E-08 52.8 7.1 25 10-34 162-186 (344)
444 PRK06217 hypothetical protein; 97.4 0.00017 3.7E-09 51.3 3.3 23 11-33 2-24 (183)
445 PF13238 AAA_18: AAA domain; P 97.4 0.00017 3.7E-09 47.8 3.1 21 13-33 1-21 (129)
446 COG1116 TauB ABC-type nitrate/ 97.4 0.00015 3.3E-09 53.2 3.0 21 13-33 32-52 (248)
447 PRK11537 putative GTP-binding 97.4 0.0045 9.8E-08 48.0 11.2 21 13-33 7-27 (318)
448 PF00005 ABC_tran: ABC transpo 97.4 0.00018 3.8E-09 48.5 3.1 23 12-34 13-35 (137)
449 PRK10646 ADP-binding protein; 97.4 0.0021 4.6E-08 44.1 8.3 23 12-34 30-52 (153)
450 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0017 3.6E-08 44.3 7.8 23 12-34 28-50 (144)
451 PRK03839 putative kinase; Prov 97.3 0.00019 4.1E-09 50.9 3.2 22 12-33 2-23 (180)
452 PF13521 AAA_28: AAA domain; P 97.3 0.00014 3.1E-09 50.6 2.5 22 12-33 1-22 (163)
453 PRK14530 adenylate kinase; Pro 97.3 0.0002 4.4E-09 52.3 3.3 22 11-32 4-25 (215)
454 COG1136 SalX ABC-type antimicr 97.3 0.00019 4.1E-09 52.4 3.0 21 12-32 33-53 (226)
455 KOG1534 Putative transcription 97.3 0.00039 8.5E-09 49.8 4.5 23 10-32 3-25 (273)
456 smart00382 AAA ATPases associa 97.3 0.00024 5.2E-09 47.4 3.3 24 11-34 3-26 (148)
457 PF00004 AAA: ATPase family as 97.3 0.00023 5.1E-09 47.4 3.1 21 13-33 1-21 (132)
458 cd00071 GMPK Guanosine monopho 97.3 0.00024 5.1E-09 48.1 3.1 21 13-33 2-22 (137)
459 TIGR00235 udk uridine kinase. 97.3 0.00031 6.8E-09 51.0 3.9 26 8-33 4-29 (207)
460 PRK01889 GTPase RsgA; Reviewed 97.3 0.00037 8.1E-09 54.8 4.5 24 11-34 196-219 (356)
461 PRK10078 ribose 1,5-bisphospho 97.3 0.00025 5.5E-09 50.6 3.2 22 12-33 4-25 (186)
462 PRK13833 conjugal transfer pro 97.3 0.0014 3E-08 50.8 7.3 25 10-34 144-168 (323)
463 TIGR02322 phosphon_PhnN phosph 97.3 0.00025 5.5E-09 50.1 3.1 22 12-33 3-24 (179)
464 PLN02200 adenylate kinase fami 97.3 0.00035 7.7E-09 51.7 3.9 23 10-32 43-65 (234)
465 PRK14532 adenylate kinase; Pro 97.3 0.00026 5.7E-09 50.5 3.2 21 12-32 2-22 (188)
466 PRK13949 shikimate kinase; Pro 97.3 0.0003 6.4E-09 49.4 3.3 21 12-32 3-23 (169)
467 COG0523 Putative GTPases (G3E 97.2 0.0031 6.8E-08 48.8 8.9 98 59-165 85-194 (323)
468 cd03110 Fer4_NifH_child This p 97.2 0.0038 8.3E-08 44.1 8.8 86 57-151 91-176 (179)
469 cd01131 PilT Pilus retraction 97.2 0.0016 3.5E-08 47.0 6.8 22 13-34 4-25 (198)
470 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00029 6.4E-09 50.1 3.0 21 12-32 5-25 (188)
471 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0038 8.2E-08 51.0 9.3 87 85-171 196-283 (634)
472 PRK13900 type IV secretion sys 97.2 0.0013 2.9E-08 51.2 6.7 25 10-34 160-184 (332)
473 KOG0066 eIF2-interacting prote 97.2 0.0038 8.3E-08 49.9 9.1 25 10-34 613-637 (807)
474 PRK05416 glmZ(sRNA)-inactivati 97.2 0.0046 1E-07 47.2 9.4 20 12-31 8-27 (288)
475 cd02023 UMPK Uridine monophosp 97.2 0.00033 7.2E-09 50.4 3.1 21 13-33 2-22 (198)
476 PRK08233 hypothetical protein; 97.2 0.00037 8.1E-09 49.3 3.3 24 10-33 3-26 (182)
477 PF04665 Pox_A32: Poxvirus A32 97.2 0.00032 6.9E-09 51.8 3.0 26 8-33 11-36 (241)
478 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00036 7.8E-09 44.9 2.8 21 11-31 16-36 (107)
479 PF07728 AAA_5: AAA domain (dy 97.2 0.00041 8.9E-09 46.9 3.3 21 12-32 1-21 (139)
480 TIGR03263 guanyl_kin guanylate 97.2 0.00034 7.4E-09 49.5 3.0 22 12-33 3-24 (180)
481 PRK04195 replication factor C 97.2 0.009 1.9E-07 49.1 11.6 25 10-34 39-63 (482)
482 PRK14531 adenylate kinase; Pro 97.2 0.00039 8.4E-09 49.5 3.3 22 11-32 3-24 (183)
483 TIGR02782 TrbB_P P-type conjug 97.2 0.0019 4.1E-08 49.6 7.2 24 10-33 132-155 (299)
484 PRK14737 gmk guanylate kinase; 97.2 0.00041 9E-09 49.5 3.3 23 11-33 5-27 (186)
485 COG1120 FepC ABC-type cobalami 97.2 0.00034 7.4E-09 52.1 3.0 20 13-32 31-50 (258)
486 PTZ00088 adenylate kinase 1; P 97.2 0.0004 8.6E-09 51.2 3.3 22 11-32 7-28 (229)
487 cd01428 ADK Adenylate kinase ( 97.2 0.00033 7.1E-09 50.1 2.8 22 12-33 1-22 (194)
488 PF03205 MobB: Molybdopterin g 97.2 0.00042 9E-09 47.1 3.1 22 12-33 2-23 (140)
489 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00038 8.2E-09 49.4 3.1 20 13-32 2-21 (183)
490 PRK00625 shikimate kinase; Pro 97.2 0.00042 9E-09 48.8 3.2 21 12-32 2-22 (173)
491 cd01130 VirB11-like_ATPase Typ 97.1 0.0015 3.3E-08 46.5 6.1 25 10-34 25-49 (186)
492 PRK05480 uridine/cytidine kina 97.1 0.00045 9.8E-09 50.2 3.4 25 9-33 5-29 (209)
493 cd02025 PanK Pantothenate kina 97.1 0.00039 8.4E-09 51.0 3.0 21 13-33 2-22 (220)
494 PRK02496 adk adenylate kinase; 97.1 0.0005 1.1E-08 48.9 3.5 22 11-32 2-23 (184)
495 TIGR01351 adk adenylate kinase 97.1 0.00039 8.4E-09 50.6 2.7 21 12-32 1-21 (210)
496 COG0541 Ffh Signal recognition 97.1 0.0012 2.7E-08 52.3 5.5 114 8-128 98-252 (451)
497 cd03238 ABC_UvrA The excision 97.1 0.00053 1.2E-08 48.4 3.2 22 10-31 21-42 (176)
498 PHA00729 NTP-binding motif con 97.1 0.00059 1.3E-08 49.9 3.5 23 11-33 18-40 (226)
499 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.00047 1E-08 51.2 3.0 21 12-32 32-52 (254)
500 COG3839 MalK ABC-type sugar tr 97.1 0.00045 9.7E-09 53.5 3.0 22 13-34 32-53 (338)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-45 Score=252.90 Aligned_cols=175 Identities=38% Similarity=0.636 Sum_probs=169.0
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA 83 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 83 (198)
.+..++.+||+|+|++|+|||+|+.|+..+.|...+..|+|+++..+.+.++++.+++++|||+|+++|+++..+|++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNINE 162 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 162 (198)
+++|+|||+++.+||+.+..|+..+.++...+.|.++||||+|+.+.+.+..++++.|+..++++ ++++||+++.|+++
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHhhCCCC
Q 048059 163 LFYEIAKRLARVSPPK 178 (198)
Q Consensus 163 ~~~~l~~~~~~~~~~~ 178 (198)
+|..|...+..++...
T Consensus 163 ~F~~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 163 AFLTLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999999988775
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-43 Score=243.02 Aligned_cols=190 Identities=53% Similarity=0.908 Sum_probs=174.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|..++|||||+-|+..+.+.....+|+|.-+..+.+.+++..+++.||||+|+++|.++.+.|+++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45799999999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||+++.+||..++.|+..+.+...++..+.++|||+|+.+.+++..++++.++...++.++++||++|.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCC-------CCCCCCC-CCCCCCCCcC
Q 048059 168 AKRLARVSPPKRS-------GINLNPE-TPERKGFCCL 197 (198)
Q Consensus 168 ~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~cc~ 197 (198)
.+.+.+....... ..-+.+. .+.+..+||+
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 9999988887542 2222222 3567788886
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-43 Score=242.32 Aligned_cols=173 Identities=38% Similarity=0.628 Sum_probs=167.0
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+.+..+||+++|+++||||+|+.++..+.+...+..|+|.++..+.+.+++..+.+++|||+|+++++++..+|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+++|||+++..||+.+..|+..+..++...+|.++||||+|+...+.+..+.++++|.++|++|+|+||++|.||+++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 048059 166 EIAKRLARVSPPK 178 (198)
Q Consensus 166 ~l~~~~~~~~~~~ 178 (198)
.|.+.+..+....
T Consensus 168 ~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 168 SLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHhhcchh
Confidence 9999999766664
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-42 Score=236.22 Aligned_cols=175 Identities=40% Similarity=0.675 Sum_probs=163.7
Q ss_pred CCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc
Q 048059 2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR 81 (198)
Q Consensus 2 ~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 81 (198)
+......+.+|++++|..++||||||.++..+.++..|.+|+|.++....+.+.+..+.+++|||+|+++|+.+.+.|++
T Consensus 14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R 93 (221)
T KOG0094|consen 14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 93 (221)
T ss_pred cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence 34455667799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ-IVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
++.++|+|||+++..||++...|++.+....+. ...+++||||.||.+.+++..+++...++++++.|.++||+.|.||
T Consensus 94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 999999999999999999999999999886554 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 048059 161 NELFYEIAKRLARVSP 176 (198)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (198)
..+|..|...+.+...
T Consensus 174 k~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 174 KQLFRRIAAALPGMEV 189 (221)
T ss_pred HHHHHHHHHhccCccc
Confidence 9999998888877633
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-40 Score=220.29 Aligned_cols=176 Identities=36% Similarity=0.632 Sum_probs=163.4
Q ss_pred CCCC-CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh
Q 048059 1 MARP-GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY 79 (198)
Q Consensus 1 m~~~-~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 79 (198)
|... +.....+||+++|.+|+|||||+.++....++.....|+|.++..+.+.+++..+++.||||+|+++|+++++.|
T Consensus 1 M~~~ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy 80 (209)
T KOG0080|consen 1 MGDSSSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY 80 (209)
T ss_pred CCCCccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH
Confidence 4443 345667999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ 158 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (198)
+++|.++|+|||++.+++|..+..|+..+..++. ++...++|+||+|.+.++.++.++..+|++++++.|+++||++.+
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 9999999999999999999999999999988753 666778999999998899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCC
Q 048059 159 NINELFYEIAKRLARVSP 176 (198)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~ 176 (198)
|++..|+.++.++++...
T Consensus 161 ~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETPS 178 (209)
T ss_pred cHHHHHHHHHHHHhcCcc
Confidence 999999999999987643
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-40 Score=222.99 Aligned_cols=172 Identities=40% Similarity=0.703 Sum_probs=165.2
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
..+.+|++++|+.|||||+|+.+++...+.+.+..|+|.++-...+.++++.+++++|||+|++.+++....|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++..++|..+..|+..++.+...+..+++++||+|+...+.++.++++.||++.++.++++||++++|++++|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q 048059 167 IAKRLARVSPPK 178 (198)
Q Consensus 167 l~~~~~~~~~~~ 178 (198)
....+++.....
T Consensus 163 ta~~Iy~~~q~g 174 (216)
T KOG0098|consen 163 TAKEIYRKIQDG 174 (216)
T ss_pred HHHHHHHHHHhc
Confidence 999988876653
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.6e-38 Score=226.84 Aligned_cols=168 Identities=29% Similarity=0.460 Sum_probs=155.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|..|||||||+.++..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..+++.+++++|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999998888788888888887777888888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||++++++|+.+..|++.+.... ++.|++|||||.|+...+.+..++++.+++.+++++++|||++|.||+++|++|
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999997765 579999999999998888888999999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 048059 168 AKRLARVSP 176 (198)
Q Consensus 168 ~~~~~~~~~ 176 (198)
++.+.....
T Consensus 163 ~~~i~~~~~ 171 (189)
T cd04121 163 ARIVLMRHG 171 (189)
T ss_pred HHHHHHhcC
Confidence 998876555
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.7e-38 Score=227.65 Aligned_cols=165 Identities=32% Similarity=0.630 Sum_probs=152.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+.|+++|..|||||||++++..+.+...+.+|++.++....+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 36899999999999999999999998888899998888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
|++++++|+.+..|+..+......+.|+++|+||+|+...+++..+++.+++++. ++.++++||++|.|++++|.+|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999888776677999999999999888888889999999885 789999999999999999999999
Q ss_pred HHHhhC
Q 048059 170 RLARVS 175 (198)
Q Consensus 170 ~~~~~~ 175 (198)
.+....
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-39 Score=223.61 Aligned_cols=174 Identities=39% Similarity=0.686 Sum_probs=166.7
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA 84 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 84 (198)
..-++-+||+++|++++|||-|+.+++.+.+..+.-+|+|..+....+.++++.++.+||||+|+++|+....+|++++.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
++++|||++...+|+.+.+|+..++.+...++++++||||+||...+.+..++++.++...+..++++||.++.|++++|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF 168 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF 168 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 048059 165 YEIAKRLARVSPPK 178 (198)
Q Consensus 165 ~~l~~~~~~~~~~~ 178 (198)
..++..++.....+
T Consensus 169 ~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 169 ERVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888776554
No 10
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=9.4e-39 Score=229.12 Aligned_cols=185 Identities=31% Similarity=0.505 Sum_probs=162.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|.+|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||+|++++..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888777778877554 3445677788899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|.+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999998887643 25689999999999987777888888889998999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059 169 KRLARVSPPKRSGINLNPETPERKGFCCL 197 (198)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 197 (198)
+.+.+...........+...++++.+|||
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQGPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccCCCcCCCCCcccccccCce
Confidence 99988888776667777777778888886
No 11
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=213.73 Aligned_cols=186 Identities=34% Similarity=0.606 Sum_probs=167.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
.-++.+|+|++|+|||+|+.++....+...|..|+|.++..+++.+.+..++++||||+|+++|+.+...|+++.+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|||+++.+||.....|++.+++.+ +..|-++||||.|.++.+.+..++++.|+...++.+|++||++..|++..|..|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 999999999999999999999986 4789999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhCCC------CCCCCCCCCCCCCCCCCCc
Q 048059 169 KRLARVSPP------KRSGINLNPETPERKGFCC 196 (198)
Q Consensus 169 ~~~~~~~~~------~~~~~~~~~~~~~~~~~cc 196 (198)
+.+.+...+ +.....++++. +.+.+||
T Consensus 166 ~qvl~~k~r~~~~~~r~~~~~l~~n~-~~~~k~c 198 (198)
T KOG0079|consen 166 KQVLQAKLRESVEQQRADAVSLKDNS-KSTKKCC 198 (198)
T ss_pred HHHHHHHHhhcHHHHhhcceEeccCC-CccccCC
Confidence 877766521 13334444443 4555777
No 12
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.1e-37 Score=227.45 Aligned_cols=167 Identities=38% Similarity=0.681 Sum_probs=154.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.|||++|++++..++..++++++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35699999999999999999999998888788899999988888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766779999999999998888888889999999999999999999999999999999
Q ss_pred HHHHHhh
Q 048059 168 AKRLARV 174 (198)
Q Consensus 168 ~~~~~~~ 174 (198)
+..+.+.
T Consensus 170 ~~~i~~~ 176 (216)
T PLN03110 170 LLEIYHI 176 (216)
T ss_pred HHHHHHH
Confidence 9988763
No 13
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.2e-38 Score=216.23 Aligned_cols=170 Identities=36% Similarity=0.621 Sum_probs=158.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
..-+||+++|++|+|||||++++...++...+..|+|.++..+.+.+++..+.+++|||+|+++|.++.-.+++++|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCC--CCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDS--QREVPTEEGEQFSQEN-GMFYIETSAKTAQNI 160 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 160 (198)
+|||++++.+|+.+..|...+..++. ...|+||+|||.|+.. .++++...++.||+.. +++||++|||...||
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV 166 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV 166 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence 99999999999999999999987654 5689999999999965 3889999999999976 579999999999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 048059 161 NELFYEIAKRLARVSPP 177 (198)
Q Consensus 161 ~~~~~~l~~~~~~~~~~ 177 (198)
.++|..+.+.+++....
T Consensus 167 ~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 167 DEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHhccch
Confidence 99999999999888764
No 14
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-37 Score=225.20 Aligned_cols=167 Identities=34% Similarity=0.587 Sum_probs=150.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
+||+|+|++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||+|++.+..+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888999988877777777 7889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELF 164 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 164 (198)
||++++++++.+..|+..+.... ....|++||+||+|+...+.+..+++..+++..+ ++++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998887632 3568999999999997667788899999999998 699999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 048059 165 YEIAKRLARVSPP 177 (198)
Q Consensus 165 ~~l~~~~~~~~~~ 177 (198)
++|++.+.+....
T Consensus 161 ~~l~~~l~~~~~~ 173 (201)
T cd04107 161 RFLVKNILANDKN 173 (201)
T ss_pred HHHHHHHHHhchh
Confidence 9999988876543
No 15
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=211.28 Aligned_cols=171 Identities=37% Similarity=0.655 Sum_probs=156.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
-.++++++++|++-+|||+|++.++.+++..-.+||.|.++....+.+ ++..+++++|||+|++++++.+..|++|+-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 357899999999999999999999999999999999999988777655 4667999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
+++|||+++.+||+.++.|+.....+.. .+..+++||+|+|+..+++++.++++++++..+..|+++||++|.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999998877543 44556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 048059 164 FYEIAKRLARVSPP 177 (198)
Q Consensus 164 ~~~l~~~~~~~~~~ 177 (198)
|+.|.+.+...-.+
T Consensus 165 F~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988876555
No 16
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=3.7e-37 Score=222.31 Aligned_cols=187 Identities=35% Similarity=0.594 Sum_probs=161.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46999999999999999999999998887888998888777777788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|||++++++++.+..|+..+.... ...|++||+||+|+.....+..+++..++...+++++++||++|.|++++|++|.
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 999999999999999999987754 5689999999999987777778888999999999999999999999999999999
Q ss_pred HHHHhhCCCCCC--------CCCCCCCCCCCCCCCc
Q 048059 169 KRLARVSPPKRS--------GINLNPETPERKGFCC 196 (198)
Q Consensus 169 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~cc 196 (198)
..+......... .....+++..++..||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 164 ELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 999886665421 1222233335777787
No 17
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.4e-37 Score=220.19 Aligned_cols=185 Identities=31% Similarity=0.542 Sum_probs=162.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887778888888877777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++++++.+..|+..+........|+++++||+|+.+.+.+..+++..++...+++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766678999999999998777788888899999899999999999999999999999999
Q ss_pred HHhhCCCCCCCCCCCCCCCCCCCCC
Q 048059 171 LARVSPPKRSGINLNPETPERKGFC 195 (198)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~c 195 (198)
+..+......+....++...++..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (188)
T cd04125 161 IIKRLEEQELSPKNIKQQFKKKNNC 185 (188)
T ss_pred HHHHhhcCcCCccccccccccccCc
Confidence 9987766655444444444444444
No 18
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.3e-37 Score=220.70 Aligned_cols=186 Identities=36% Similarity=0.619 Sum_probs=158.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
+||+++|++|||||||++++.++.+.. .+.++.+.++....+.+++..+.+.||||||++++...+..++.++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 5677878777777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
||++++++++.+..|+..+........|+++++||+|+...+.+..+++..++..++++++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876667899999999999777777778889999999999999999999999999999999
Q ss_pred HHHhhCCCCCC----CCCCCCCCCCCCCCCc
Q 048059 170 RLARVSPPKRS----GINLNPETPERKGFCC 196 (198)
Q Consensus 170 ~~~~~~~~~~~----~~~~~~~~~~~~~~cc 196 (198)
.+.+......+ ....=....+|+.+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCcEEeccccCcccccCCCC
Confidence 99888543211 1112223445777777
No 19
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=7.1e-37 Score=214.98 Aligned_cols=164 Identities=40% Similarity=0.710 Sum_probs=151.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988888888888888777778888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
||++++++++.+..|+..+.....+..|+++|+||+|+...+.+..+++.++++..+++++++||++|.|++++|.++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887766677899999999999888888889999999999999999999999999999999998
Q ss_pred HHHh
Q 048059 170 RLAR 173 (198)
Q Consensus 170 ~~~~ 173 (198)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 8764
No 20
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=219.57 Aligned_cols=185 Identities=32% Similarity=0.583 Sum_probs=157.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999999888878888887665 556678888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
+|||++++++++.+..|+..+.+.. ..+.|+++++||+|+...+.+..+++..++..++++++++||++|.|++++|.+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 9999999999999999999887753 357899999999999777777778888898888999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059 167 IAKRLARVSPPKRSGINLNPETPERKGFCCL 197 (198)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 197 (198)
|++.+.+..++. ..+++.+++++-||.
T Consensus 162 l~~~l~~~~~~~----~~~~~~~~~~~~~~~ 188 (189)
T PTZ00369 162 LVREIRKYLKED----MPSQKQKKKGGLCLI 188 (189)
T ss_pred HHHHHHHHhhcc----chhhhhhccCCeeee
Confidence 999998776654 222333445555663
No 21
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=7.3e-37 Score=222.51 Aligned_cols=181 Identities=37% Similarity=0.614 Sum_probs=151.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+|+|.+|||||||+++|+.+.+.. +.++++.++....+ ..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 56777766544332 4678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-------------------QREVPTEEGEQFSQENG----- 146 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 146 (198)
|++++++|+.+..|+..+........|++||+||+|+.. .+.+..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888888776556789999999999965 57888999999999876
Q ss_pred ---------CeEEEEccCCCCCHHHHHHHHHHHHHhhCCCC-----CCCCCCCCCCCC-CCCCCc
Q 048059 147 ---------MFYIETSAKTAQNINELFYEIAKRLARVSPPK-----RSGINLNPETPE-RKGFCC 196 (198)
Q Consensus 147 ---------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~cc 196 (198)
++|+++||++|.||+++|..+++.+.+...++ +....+.+.+++ +|.+||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence 68999999999999999999998887555444 334455666665 555666
No 22
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=7.9e-37 Score=217.06 Aligned_cols=164 Identities=28% Similarity=0.481 Sum_probs=147.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
+...+||+++|++|+|||||+.++..+.+...+.||.+..+ ...+.+++..+.+.+|||+|++.|..+++.+++++|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45679999999999999999999999999888889988766 45677888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 048059 87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIET 152 (198)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 152 (198)
|+|||++++.+|+.+ ..|+..+.... +..|+++|+||+|+.. .+.+..+++.++++.+++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 79999998765 5789999999999864 346889999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q 048059 153 SAKTAQN-INELFYEIAKRLA 172 (198)
Q Consensus 153 Sa~~~~~-i~~~~~~l~~~~~ 172 (198)
||++|.| |+++|..+++.+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988643
No 23
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-37 Score=202.95 Aligned_cols=171 Identities=31% Similarity=0.553 Sum_probs=161.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
-+..+|++|+|+..+|||||+.++++..+...+..|.|.++..+++--..+.+++++|||+|+++|+.++.+++++++++
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 45678999999999999999999999999999999999999999887788899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|++||+++.+||..++.|...+...+-.+.|+++++||||+.+++.++.+.++.++.++|..||++||+.+.|++.+|..
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 99999999999999999999998887788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 048059 167 IAKRLARVSPP 177 (198)
Q Consensus 167 l~~~~~~~~~~ 177 (198)
++..+-+...+
T Consensus 178 lv~~Ic~kmse 188 (193)
T KOG0093|consen 178 LVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHhhh
Confidence 99988776544
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.4e-36 Score=214.53 Aligned_cols=159 Identities=33% Similarity=0.546 Sum_probs=144.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|.+|+|||||+.++..+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++++..+++.++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999888999998766 445667888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059 91 DISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQR----------EVPTEEGEQFSQENGM-FYIETSAKTAQ 158 (198)
Q Consensus 91 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (198)
|+++++||+.+ ..|+..+.... .+.|++|||||+|+.+.+ .+..+++..+++..++ .++++||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987764 579999999999996543 4788999999999998 69999999999
Q ss_pred CHHHHHHHHHHHH
Q 048059 159 NINELFYEIAKRL 171 (198)
Q Consensus 159 ~i~~~~~~l~~~~ 171 (198)
||+++|+.+++.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 25
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.7e-36 Score=219.98 Aligned_cols=170 Identities=27% Similarity=0.442 Sum_probs=151.1
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+++|++|||||||+.+|..+.+...+.||++.++. ..+.+++..+.+.||||+|++.|..+++.+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 3446799999999999999999999999999889999987764 456788899999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 048059 86 AVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIE 151 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 151 (198)
+|+|||++++++|+.+ ..|+..+.... +..|+++|+||+|+.. .+.+..++++.+++.+++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999985 79999998765 5689999999999864 367889999999999999 6999
Q ss_pred EccCCCC-CHHHHHHHHHHHHHhhCCC
Q 048059 152 TSAKTAQ-NINELFYEIAKRLARVSPP 177 (198)
Q Consensus 152 ~Sa~~~~-~i~~~~~~l~~~~~~~~~~ 177 (198)
|||++|. |++++|..++..+.+...+
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 9999997 8999999999988775443
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.5e-36 Score=216.59 Aligned_cols=164 Identities=24% Similarity=0.418 Sum_probs=144.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|+.|||||||+.++..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|+++|..+++.+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3589999999999999999999999988888899886653 445678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEcc
Q 048059 89 VYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENG-MFYIETSA 154 (198)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 154 (198)
|||++++.+|+.+. .|+..+.... .+.|++||+||.|+... +.+..+++..+++.++ ++++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 6888777654 57899999999999644 2467788999999998 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHhh
Q 048059 155 KTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~ 174 (198)
++|.|++++|.+|++.+...
T Consensus 160 k~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999988653
No 27
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.7e-36 Score=217.69 Aligned_cols=168 Identities=36% Similarity=0.679 Sum_probs=151.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
.+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+ .+..+.+.+|||+|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888778888888887777766 4567899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
|||++++++++.+..|+..+..... ...|++||+||+|+...+.+..+++..+++.++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999877543 457889999999998777888889999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 048059 168 AKRLARVSPP 177 (198)
Q Consensus 168 ~~~~~~~~~~ 177 (198)
.+.+.+....
T Consensus 162 ~~~~~~~~~~ 171 (211)
T cd04111 162 TQEIYERIKR 171 (211)
T ss_pred HHHHHHHhhc
Confidence 9988877544
No 28
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.3e-36 Score=218.72 Aligned_cols=164 Identities=34% Similarity=0.516 Sum_probs=149.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
+||+++|++|||||||+++|.++.+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998888999999888777777754 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGN---QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
||++++++++.+..|+..+..... ...|+++|+||+|+...+.+..++...+++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999887542 35689999999999877888888999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 048059 167 IAKRLARV 174 (198)
Q Consensus 167 l~~~~~~~ 174 (198)
|...+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998865
No 29
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.5e-36 Score=211.09 Aligned_cols=165 Identities=37% Similarity=0.672 Sum_probs=151.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999999888889999888777777788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|||++++++++.+..|+..+........|+++++||+|+.+.+.+..+++..++..++++++++||++|.|++++|.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887667789999999999987777788888999999999999999999999999999999
Q ss_pred HHHHh
Q 048059 169 KRLAR 173 (198)
Q Consensus 169 ~~~~~ 173 (198)
+++..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98864
No 30
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.7e-36 Score=210.28 Aligned_cols=160 Identities=37% Similarity=0.607 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++++..++..++.++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999988888899988887778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++++++.+..|+..+......+.|+++|+||.|+...+.+..+++..+++.++++++++||++|.|++++|.+|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999987765679999999999998888888899999999999999999999999999999999864
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.5e-36 Score=211.94 Aligned_cols=166 Identities=30% Similarity=0.534 Sum_probs=148.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|.+|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+++.++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998888888887655 34466788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..+++.++++++++||++|.||+++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998988887643 36789999999999987788888999999999999999999999999999999999
Q ss_pred HHHHhhCC
Q 048059 169 KRLARVSP 176 (198)
Q Consensus 169 ~~~~~~~~ 176 (198)
..+.+...
T Consensus 161 ~~~~~~~~ 168 (172)
T cd04141 161 REIRRKES 168 (172)
T ss_pred HHHHHhcc
Confidence 98886443
No 32
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=215.62 Aligned_cols=169 Identities=39% Similarity=0.698 Sum_probs=154.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..++.++|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34699999999999999999999998888778888888887778888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||++++++++.+..|+..+........|+++++||+|+...+.+..+++.++++.++++++++||+++.|++++|.++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877666778999999999998877888899999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 048059 168 AKRLARVSP 176 (198)
Q Consensus 168 ~~~~~~~~~ 176 (198)
++.+.+...
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 999887544
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=8.7e-36 Score=209.25 Aligned_cols=163 Identities=31% Similarity=0.585 Sum_probs=148.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++|.++.+...+.++.+.++....+...+..+.+.+||++|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988888888887776666666777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++++++.+..|+..+........|+++++||+|+...+.+..++...++..++++++++||++|.|++++|++|...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766678999999999998777777788888999999999999999999999999999987
Q ss_pred HHh
Q 048059 171 LAR 173 (198)
Q Consensus 171 ~~~ 173 (198)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 654
No 34
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-37 Score=201.25 Aligned_cols=169 Identities=40% Similarity=0.661 Sum_probs=160.6
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.-+.-+|++++|+.|+|||+|+.++..+++......|+|.++..+.++++++.++++||||+|+++|++....|++++-+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
.++|||+++.++|+.+..|+...+..+.+++.+++++||.|+..+++++..++..|+.+..+.++++||++|+|+++.|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhh
Q 048059 166 EIAKRLARV 174 (198)
Q Consensus 166 ~l~~~~~~~ 174 (198)
...+.+..+
T Consensus 165 ~c~~tIl~k 173 (214)
T KOG0086|consen 165 KCARTILNK 173 (214)
T ss_pred HHHHHHHHH
Confidence 877766543
No 35
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.8e-36 Score=212.59 Aligned_cols=161 Identities=27% Similarity=0.481 Sum_probs=144.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
++||+++|++|||||||++++.++.+...+.||.+..+ ...+.+++..+.+.+|||+|++.|..+.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888889987765 45677888899999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEccC
Q 048059 90 YDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIETSAK 155 (198)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (198)
||++++++|+.+ ..|+..+.... ++.|+++||||+|+.. .+.+..+++.++++.+++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 79999998875 5789999999999854 345888999999999997 89999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 048059 156 TAQN-INELFYEIAKRLA 172 (198)
Q Consensus 156 ~~~~-i~~~~~~l~~~~~ 172 (198)
+|+| ++++|..+++.++
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998654
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.5e-35 Score=208.22 Aligned_cols=163 Identities=38% Similarity=0.687 Sum_probs=150.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++++..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999888888888888888777788888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
||++++++++.+..|+..+........|+++++||+|+...+.+..+++..+++..+++++++||++|.|++++|.+|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998766567899999999999877778888899999999999999999999999999999998
Q ss_pred HHH
Q 048059 170 RLA 172 (198)
Q Consensus 170 ~~~ 172 (198)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 875
No 37
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.8e-35 Score=211.00 Aligned_cols=185 Identities=37% Similarity=0.606 Sum_probs=154.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
+||+|+|++|+|||||+++|+++.+.. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5778888887777888888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC----CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS----QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
||++++.+++.+..|+..+.... .+.|+++|+||+|+.. .+.+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887753 4689999999999853 234556778888888899999999999999999999
Q ss_pred HHHHHHHhhCCCC---CCCCCCCCCCCCCCCCCc
Q 048059 166 EIAKRLARVSPPK---RSGINLNPETPERKGFCC 196 (198)
Q Consensus 166 ~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~cc 196 (198)
+|.+.+.+....+ .....+..+..++..+||
T Consensus 160 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (193)
T cd04118 160 KVAEDFVSRANNQMNTEKGVDLGQKKNSYFYSCC 193 (193)
T ss_pred HHHHHHHHhcccccCCCCccccCCcCCCCCCCCC
Confidence 9999998764433 112223333334666677
No 38
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.7e-35 Score=210.47 Aligned_cols=166 Identities=28% Similarity=0.522 Sum_probs=149.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC----------CcEEEEEEEeCCCchhhcccchh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS----------EATVKFDIWDTAGQERYHSLAPM 78 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~ 78 (198)
+.+||+++|++|||||||++++.++.+...+.++.+.++....+.+. +..+.+.+||++|++.+..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46999999999999999999999999988888998887766655543 45688999999999999999999
Q ss_pred hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA 157 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (198)
+++++|++++|||++++++++.+..|+..+.... .++.|+++|+||+|+...+.+..+++..++...+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987753 357899999999999877788888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 048059 158 QNINELFYEIAKRLARV 174 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~~ 174 (198)
.|++++|++|++.+.++
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 163 TNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 39
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.4e-35 Score=207.52 Aligned_cols=161 Identities=38% Similarity=0.722 Sum_probs=153.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
++++++++.+..|+..+........|++|++||.|+...+.+..++++.+++.++++|+++||+++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998776789999999999988889999999999999999999999999999999999999987
Q ss_pred H
Q 048059 172 A 172 (198)
Q Consensus 172 ~ 172 (198)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.8e-35 Score=210.46 Aligned_cols=167 Identities=23% Similarity=0.425 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|+|||||++++.++.+...+.+|.+.++....+.+++..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999988889999998887788888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-----CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-----QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
|++++++++.+..|+..+........| ++|+||+|+.. ......+++..+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998876555567 57899999842 112234677888888999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 048059 166 EIAKRLARVSPPK 178 (198)
Q Consensus 166 ~l~~~~~~~~~~~ 178 (198)
++.+.+.+....+
T Consensus 160 ~l~~~l~~~~~~~ 172 (182)
T cd04128 160 IVLAKAFDLPLTI 172 (182)
T ss_pred HHHHHHHhcCCCh
Confidence 9999998765544
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.1e-35 Score=207.48 Aligned_cols=163 Identities=27% Similarity=0.583 Sum_probs=149.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++|+++.+...+.++.+.++....+...+..+.+.+|||+|++.+..++..++.++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888999998888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC-----CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGN-----QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
|++++.+++.+..|+..+..... .+.|+++|+||+|+...+....++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999987643 4689999999999976667778888889998999999999999999999999
Q ss_pred HHHHHHHh
Q 048059 166 EIAKRLAR 173 (198)
Q Consensus 166 ~l~~~~~~ 173 (198)
+|++.+.+
T Consensus 161 ~l~~~l~~ 168 (168)
T cd04119 161 TLFSSIVD 168 (168)
T ss_pred HHHHHHhC
Confidence 99988753
No 42
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.8e-35 Score=211.64 Aligned_cols=179 Identities=27% Similarity=0.480 Sum_probs=151.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
+||+|+|++|||||||+++|.++.+...+.++.+.++... +... +..+.+.+|||+|++.+..++..++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999998888888877766443 4444 6788999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 048059 90 YDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ----REVPTEEGEQFSQENGM-FYIETSAKTAQNINEL 163 (198)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 163 (198)
||++++++++.+. .|+..+... .++.|+++|+||+|+... +.+..+++.+++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 588777654 357899999999998543 35667888999999998 9999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059 164 FYEIAKRLARVSPPKRSGINLNPETPERKGFCCL 197 (198)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 197 (198)
|..+++.+....... +.+...++..|+|
T Consensus 159 f~~l~~~~~~~~~~~------~~~~~~~~~~c~~ 186 (187)
T cd04132 159 FDTAIEEALKKEGKA------IFKKKKKKRKCVV 186 (187)
T ss_pred HHHHHHHHHhhhhhh------hhccCCCCccccc
Confidence 999999988766544 3444557777765
No 43
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.3e-35 Score=213.37 Aligned_cols=166 Identities=23% Similarity=0.423 Sum_probs=144.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+|+|++|||||||+.+|..+.+...+.||.+.++. ..+.+++..+.+.||||+|++.|..+++.++.++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999998889999887764 5667888899999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccC
Q 048059 90 YDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAK 155 (198)
Q Consensus 90 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (198)
||++++++|+.+ ..|...+... .++.|++||+||+|+... ..+..+++..+++..++ +|+||||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999999 4677666554 467899999999998542 24778899999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHhhCCC
Q 048059 156 TAQN-INELFYEIAKRLARVSPP 177 (198)
Q Consensus 156 ~~~~-i~~~~~~l~~~~~~~~~~ 177 (198)
++.+ |+++|...+...+.+..+
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCC
Confidence 9885 999999999987775444
No 44
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=193.01 Aligned_cols=194 Identities=39% Similarity=0.636 Sum_probs=174.9
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA 83 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 83 (198)
|.+-..-+|-+++|+-|+|||+|+..++..++......++|+.+-...+.+.+..+++++|||+|+++++.....|++++
T Consensus 5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
-+.++|||++.+.++..+..|+...++..+++..+++++||.|++.++.+..+++++|+.++++.++++||++|.|+++.
T Consensus 85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC-----------------CCCCCCCCCCCCCCCCCcC
Q 048059 164 FYEIAKRLARVSPPK-----------------RSGINLNPETPERKGFCCL 197 (198)
Q Consensus 164 ~~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~cc~ 197 (198)
|-...+++++.-.+. .+.-++.++.+.++.+|-|
T Consensus 165 fle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 165 FLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 999888888764442 2223344455557777865
No 45
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=200.47 Aligned_cols=171 Identities=37% Similarity=0.668 Sum_probs=161.7
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+++|..-+|||||+-++..++|......|+-..+..+.+++.+....+.||||+|+++|..+-+.|++++++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 35668999999999999999999999999999998988888888999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+++|||++|..||+.+..|...++...+...-++||+||+|+++++.++.+++..++..-|+.|+++||+++.||.++|.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 99999999999999999999999998778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 048059 166 EIAKRLARVSP 176 (198)
Q Consensus 166 ~l~~~~~~~~~ 176 (198)
.|..++.+...
T Consensus 169 ~Lt~~MiE~~s 179 (218)
T KOG0088|consen 169 SLTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHHhh
Confidence 99998887663
No 46
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=6.2e-35 Score=204.83 Aligned_cols=163 Identities=41% Similarity=0.723 Sum_probs=149.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..+++.++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999998888888999988888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887666789999999999987777788889999998899999999999999999999998
Q ss_pred HHH
Q 048059 169 KRL 171 (198)
Q Consensus 169 ~~~ 171 (198)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 875
No 47
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.3e-34 Score=203.87 Aligned_cols=165 Identities=41% Similarity=0.722 Sum_probs=151.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+|+|++|||||||++++.++.+...+.++.+.++....+...+....+.+||++|++++..++..+++++|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999988888888888888877888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|||++++++++.+..|+..+.....++.|+++|+||.|+...+.+..+++..++...+++++++||+++.|++++|.++.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887667899999999999987777888889999999999999999999999999999999
Q ss_pred HHHHh
Q 048059 169 KRLAR 173 (198)
Q Consensus 169 ~~~~~ 173 (198)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T cd01866 163 KEIYE 167 (168)
T ss_pred HHHHh
Confidence 88765
No 48
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.6e-35 Score=208.40 Aligned_cols=164 Identities=30% Similarity=0.493 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
.||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++.++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988888888876653 44566777889999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CeEEEEccCC
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQENG-MFYIETSAKT 156 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~ 156 (198)
|++++++|+.+. .|+..+.... .+.|+++|+||+|+...+ .+..+++..++...+ ++++++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 6888887654 578999999999986543 345677788888776 6899999999
Q ss_pred CCCHHHHHHHHHHHHHhhCC
Q 048059 157 AQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~~~ 176 (198)
|.|++++|.+|.+.+....+
T Consensus 159 ~~~v~e~f~~l~~~~~~~~~ 178 (189)
T cd04134 159 NRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred CCCHHHHHHHHHHHHhcccc
Confidence 99999999999998875444
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8.2e-35 Score=212.65 Aligned_cols=165 Identities=31% Similarity=0.513 Sum_probs=147.3
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
+...+||+++|.+|||||||+++++.+.+...+.++.+.++....+...+..+.+.+|||+|++.+..++..+++++|++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 46789999999999999999999999998888999999888877777777889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.. +.+..++. .+++..+++++++||++|.|++++|.+
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 99999999999999999999998764 5789999999999853 33444444 777788999999999999999999999
Q ss_pred HHHHHHhh
Q 048059 167 IAKRLARV 174 (198)
Q Consensus 167 l~~~~~~~ 174 (198)
|++.+.+.
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99998765
No 50
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8.5e-35 Score=205.90 Aligned_cols=159 Identities=25% Similarity=0.430 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|.+|+|||||+.++..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999988888899887664 34567788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CeEEEEccCC
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENG-MFYIETSAKT 156 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 156 (198)
|++++++++.+. .|+..+.... ++.|++||+||+|+... +.+..+++..+++..+ +.++++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999996 5888887654 56899999999998543 5677888899998887 6999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 048059 157 AQNINELFYEIAKRL 171 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~ 171 (198)
|.|++++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 51
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-34 Score=203.14 Aligned_cols=162 Identities=40% Similarity=0.674 Sum_probs=146.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988887788888877777777888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l 167 (198)
|||++++.+++.+..|+..+......+.|+++|+||+|+...+....+.+..+++..++ .++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876667789999999999987777778888999998886 68999999999999999999
Q ss_pred HHH
Q 048059 168 AKR 170 (198)
Q Consensus 168 ~~~ 170 (198)
.+.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.3e-34 Score=202.35 Aligned_cols=160 Identities=41% Similarity=0.712 Sum_probs=147.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888877777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++++++.+..|+..+.....++.|+++++||.|+...+.+..+++..++...++.++++||+++.|++++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877666789999999999998777888889999999999999999999999999999999875
No 53
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=195.29 Aligned_cols=171 Identities=40% Similarity=0.683 Sum_probs=161.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
..-+||+++|+.|+|||+|+++++.+.++.....|+|.++..+++.+++..+++++|||+|++++++....|++.++++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||++...+|+-+..|+..+..+++.++.-++|+||.|+.+.+++....+++|+......|+++||++.+|++.+|..+
T Consensus 85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence 99999999999999999999999988888889999999999999999999999999988899999999999999999999
Q ss_pred HHHHHhhCCCC
Q 048059 168 AKRLARVSPPK 178 (198)
Q Consensus 168 ~~~~~~~~~~~ 178 (198)
...+...-+.+
T Consensus 165 a~rli~~ar~~ 175 (213)
T KOG0095|consen 165 ACRLISEARQN 175 (213)
T ss_pred HHHHHHHHHhc
Confidence 88776654443
No 54
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=9.7e-35 Score=203.34 Aligned_cols=161 Identities=31% Similarity=0.595 Sum_probs=142.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|++|||||||++++..+.+...+.++.+. .....+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 379999999999999999999998887777787763 3355667788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++.++++++++||++|.|++++|++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887753 35789999999999977667777788888888889999999999999999999998
Q ss_pred HHH
Q 048059 169 KRL 171 (198)
Q Consensus 169 ~~~ 171 (198)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.1e-34 Score=203.36 Aligned_cols=162 Identities=33% Similarity=0.627 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|.+|||||||++++..+.+...+.++++..+ ...+.+.+..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998887777778877655 35567778888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
||++++.+++.+..|+..+.... ..+.|+++++||+|+.....+..++...+++.++++++++||++|.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999887653 36789999999999987777777778888888999999999999999999999998
Q ss_pred HHHH
Q 048059 169 KRLA 172 (198)
Q Consensus 169 ~~~~ 172 (198)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8664
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4e-34 Score=200.92 Aligned_cols=160 Identities=31% Similarity=0.551 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++++.+.+...+.++.+.++....+...+..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888899888877777777788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++++++.+..|+..+..... +.|+++|+||+|+.. +.+. .....+++..+++++++||++|.|++++|++|++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999988754 799999999999863 3333 34556777788899999999999999999999998
Q ss_pred HHh
Q 048059 171 LAR 173 (198)
Q Consensus 171 ~~~ 173 (198)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 875
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.8e-34 Score=200.82 Aligned_cols=159 Identities=30% Similarity=0.549 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC--CcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS--EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
+||+++|++|+|||||+++++++.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999998888888888888766666666 778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|||++++++++.+..|+..+.... .+.|+++|+||.|+..++.+..+++..+++.++++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999887654 5789999999999987777888889999999999999999999999999999987
Q ss_pred HH
Q 048059 169 KR 170 (198)
Q Consensus 169 ~~ 170 (198)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 54
No 58
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=205.86 Aligned_cols=169 Identities=37% Similarity=0.642 Sum_probs=146.6
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|+++.+ ..+.++.+.++....+.+++..+.+.||||||++++..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 445679999999999999999999998776 4567888887777777788888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHH-HHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 86 AVVVYDISNMDTFNRANK-LVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
+|+|||++++++++.+.. |...+.... ....|+++|+||+|+...+.+..++...++...++.++++||+++.|++++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 168 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC 168 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999965 655555432 345789999999999877777788888899999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 048059 164 FYEIAKRLARVS 175 (198)
Q Consensus 164 ~~~l~~~~~~~~ 175 (198)
|++|...+.+..
T Consensus 169 ~~~l~~~~~~~~ 180 (211)
T PLN03118 169 FEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHhhh
Confidence 999999887754
No 59
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=5.9e-34 Score=200.76 Aligned_cols=162 Identities=28% Similarity=0.550 Sum_probs=144.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|.+|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+|||+|++++..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988899999988877778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQRE--VPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
++++++++.+..|+..+... .....|+++|+||.|+...+. ...+++..++++++++++++||++|.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999988664 334578999999999865433 345677888888899999999999999999999999
Q ss_pred HHHHh
Q 048059 169 KRLAR 173 (198)
Q Consensus 169 ~~~~~ 173 (198)
..+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88765
No 60
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.7e-34 Score=199.58 Aligned_cols=163 Identities=45% Similarity=0.771 Sum_probs=149.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887778888888877777888888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++.+++.+..|+..+........|+++++||+|+...+....+.+..+++..+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888766789999999999987767777888899999999999999999999999999999998
Q ss_pred HHh
Q 048059 171 LAR 173 (198)
Q Consensus 171 ~~~ 173 (198)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 865
No 61
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4e-34 Score=200.36 Aligned_cols=161 Identities=34% Similarity=0.624 Sum_probs=141.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
++||+++|.+|||||||++++..+.+...+.++.+ ++....+.+++..+.++||||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988877777765 44456677788888899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
||++++++++++..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|.++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998887753 36789999999999977667777778888888889999999999999999999998
Q ss_pred HHH
Q 048059 169 KRL 171 (198)
Q Consensus 169 ~~~ 171 (198)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 62
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4e-34 Score=202.32 Aligned_cols=159 Identities=25% Similarity=0.442 Sum_probs=139.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|.+|||||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+++.++.++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 37999999999999999999999998888888876443 44556788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccC
Q 048059 90 YDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAK 155 (198)
Q Consensus 90 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (198)
||++++++|+.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..++++++. ++++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999995 6888777654 57899999999998542 35778999999999985 99999999
Q ss_pred CCCCHHHHHHHHHHH
Q 048059 156 TAQNINELFYEIAKR 170 (198)
Q Consensus 156 ~~~~i~~~~~~l~~~ 170 (198)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=9.2e-34 Score=199.83 Aligned_cols=163 Identities=36% Similarity=0.585 Sum_probs=145.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34679999999999999999999999888888888888887777788888999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNIN 161 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (198)
++|||++++++++.+..|+..+.... ..+.|+++++||.|+. .+.+..++++++++.+++ +++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998876643 2568999999999986 556677889999998884 89999999999999
Q ss_pred HHHHHHHHH
Q 048059 162 ELFYEIAKR 170 (198)
Q Consensus 162 ~~~~~l~~~ 170 (198)
++|+++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=6.3e-34 Score=199.78 Aligned_cols=158 Identities=30% Similarity=0.501 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++++++.+...+.++.+..+ ...+......+.+.+|||+|++++..++..++..++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988777778776554 444556677889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+++..+++..++..++++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999988887643 2578999999999997767777888888998899999999999999999999998
Q ss_pred HH
Q 048059 168 AK 169 (198)
Q Consensus 168 ~~ 169 (198)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 65
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.2e-33 Score=197.47 Aligned_cols=160 Identities=44% Similarity=0.746 Sum_probs=146.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||++++++..+...+.++.+.++....+..++..+.+.+||+||++.+..++..++..+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999888888888888888888888887889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++++++.+..|+..+......+.|+++++||+|+...+....++...+++..+++++++||+++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877655578999999999997667777888899998889999999999999999999999874
No 66
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.2e-33 Score=198.06 Aligned_cols=161 Identities=34% Similarity=0.635 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..++.++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888777777766433 455667778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
|++++++++.+..|+..+.+.. ..+.|+++++||+|+...+....+++..+++..+++++++||++|.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 9999999999999988887643 356899999999999877777778888899989999999999999999999999998
Q ss_pred HHH
Q 048059 170 RLA 172 (198)
Q Consensus 170 ~~~ 172 (198)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=2.6e-33 Score=196.13 Aligned_cols=162 Identities=60% Similarity=0.982 Sum_probs=148.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
++||+++|++|||||||+++|+++.+.....++.+..+....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999988777788888888788888888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
||++++++++.+..|+..+........|+++++||.|+...+....++...++...+++++++||++|.|+.++|++|+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998876677999999999998777777788889999999999999999999999999999998
Q ss_pred HH
Q 048059 170 RL 171 (198)
Q Consensus 170 ~~ 171 (198)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.8e-33 Score=198.45 Aligned_cols=162 Identities=36% Similarity=0.642 Sum_probs=146.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-ccchhhhcCCCeEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-SLAPMYYRGAAAAVV 88 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~ 88 (198)
.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. .+++.+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999988887888888888877888888888999999999999886 578899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC---CCCHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT---AQNINELF 164 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~ 164 (198)
|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999999887753 36789999999999988888888889999999999999999999 88999999
Q ss_pred HHHHHHH
Q 048059 165 YEIAKRL 171 (198)
Q Consensus 165 ~~l~~~~ 171 (198)
.++++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9998765
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.2e-33 Score=196.04 Aligned_cols=160 Identities=33% Similarity=0.602 Sum_probs=139.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999888777778877554 45566777788899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
||+++..+++.+..|+..+.... ..+.|+++|+||+|+.. +....+++..+++..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988887753 35789999999999865 45566778888888899999999999999999999998
Q ss_pred HHH
Q 048059 169 KRL 171 (198)
Q Consensus 169 ~~~ 171 (198)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 70
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3.6e-33 Score=195.22 Aligned_cols=160 Identities=29% Similarity=0.473 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|.+|||||||++++..+.+...+.++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777777777776777778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++.+++.+..|+..+.... .+.|+++++||+|+... ..++...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987653 56899999999998432 2345566777788999999999999999999999988
Q ss_pred HHhh
Q 048059 171 LARV 174 (198)
Q Consensus 171 ~~~~ 174 (198)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7654
No 71
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-36 Score=198.04 Aligned_cols=170 Identities=28% Similarity=0.488 Sum_probs=155.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC---------CcEEEEEEEeCCCchhhcccchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS---------EATVKFDIWDTAGQERYHSLAPM 78 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~~ 78 (198)
++-+|.+.+|++|+||||++.+++.+++......|.|.++..+.+.+. +..+.+++|||+|++++++++.+
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 345788999999999999999999999999999999999887766542 34578999999999999999999
Q ss_pred hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA 157 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (198)
+++.|-+++++||+++.+||-++.+|+..++.++. .+.-+++++||+|++..+.+..+++.+++.++++|||++||-+|
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 99999999999999999999999999999998754 56679999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCC
Q 048059 158 QNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~~~ 177 (198)
.|+.+..+.|+..++++-.+
T Consensus 167 ~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877654
No 72
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.9e-33 Score=195.41 Aligned_cols=161 Identities=31% Similarity=0.556 Sum_probs=141.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|++|+|||||++++.++.+...+.++.+..+ .....+.+..+.+.+|||||++++..++..++.++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999887777777766444 44456777788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
||++++++++.+..|+..+... ...+.|+++++||+|+...+.+..++...+++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999999888764 335789999999999977777777788889988899999999999999999999998
Q ss_pred HHH
Q 048059 169 KRL 171 (198)
Q Consensus 169 ~~~ 171 (198)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=4e-33 Score=200.68 Aligned_cols=167 Identities=25% Similarity=0.318 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhcC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYRG 82 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~ 82 (198)
+||+|+|.+|||||||++++.++.+...+.|+.+.+.....+.+++..+.+.+|||||.+.+.. .....+.+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988888888887666666677788889999999999754321 12345789
Q ss_pred CCeEEEEEECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCC
Q 048059 83 AAAAVVVYDISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQ 158 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 158 (198)
+|++|+|||++++++++.+..|++.+.... ..+.|+++|+||+|+...+.+..++...++. .++++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887753 4678999999999997766667777777754 568999999999999
Q ss_pred CHHHHHHHHHHHHHhhCCC
Q 048059 159 NINELFYEIAKRLARVSPP 177 (198)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~~ 177 (198)
|++++|+.+++.+..+-+.
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999988866554
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.3e-33 Score=194.78 Aligned_cols=160 Identities=27% Similarity=0.455 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG--QFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+||+++|++|||||||++++..+ .+...+.++.+.++....+.+. +..+.+.+|||+|++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5667788888888766666664 56789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||++++++++.+..|++.+.... ...|+++|+||+|+....++.......++...+++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999988764 568999999999997777777777778888889999999999999999999999
Q ss_pred HHHH
Q 048059 168 AKRL 171 (198)
Q Consensus 168 ~~~~ 171 (198)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3.7e-33 Score=200.67 Aligned_cols=156 Identities=28% Similarity=0.532 Sum_probs=140.4
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCCh
Q 048059 16 LGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM 95 (198)
Q Consensus 16 ~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (198)
+|.+|||||||+++++.+.+...+.+|++.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888889999888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 96 DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 96 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
.+++.+..|+..+.... .+.|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.||+++|.+|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998864 5789999999999854 3444443 467888899999999999999999999999988764
No 76
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.2e-32 Score=191.02 Aligned_cols=161 Identities=42% Similarity=0.759 Sum_probs=143.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||++|++.+..+++.++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998877666667666666666777777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++++++.+..|+..+......+.|+++++||+|+...+.+..++..++++..+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999888765678999999999998777777788888888899999999999999999999999876
Q ss_pred H
Q 048059 171 L 171 (198)
Q Consensus 171 ~ 171 (198)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=7.1e-33 Score=198.74 Aligned_cols=158 Identities=23% Similarity=0.343 Sum_probs=129.8
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCCCCcce-eEEEEE--------EEeCCcEEEEEEEeCCCchhhcc
Q 048059 10 QAKLVLLGDMGTGKTSLAL-RFIKGQ-----FYDQQEPTIGA-AFFTQI--------LSLSEATVKFDIWDTAGQERYHS 74 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~ 74 (198)
.+||+++|.+|||||||+. ++.++. +...+.||++. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 555432 34556777752 222221 25678889999999999875 3
Q ss_pred cchhhhcCCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC-------------------CCCCC
Q 048059 75 LAPMYYRGAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS-------------------QREVP 134 (198)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------------------~~~~~ 134 (198)
+...+++++|++|+|||++++.+|+.+. .|+..+.... ...|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999996 6988887764 5689999999999863 46788
Q ss_pred HHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 135 TEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
.++++.++++++++|++|||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999998864
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2.7e-32 Score=192.55 Aligned_cols=165 Identities=39% Similarity=0.662 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777788888777777788888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFY 165 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~ 165 (198)
|++++++++.+..|...+..... .+.|+++|+||+|+...+....++...+++..+ ++++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888887655432 368999999999997666667788888888887 7999999999999999999
Q ss_pred HHHHHHHhhC
Q 048059 166 EIAKRLARVS 175 (198)
Q Consensus 166 ~l~~~~~~~~ 175 (198)
++.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999888764
No 79
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=9.5e-33 Score=195.34 Aligned_cols=159 Identities=27% Similarity=0.477 Sum_probs=138.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEEC
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDI 92 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 92 (198)
|+|+|++|||||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777776554 34566778888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059 93 SNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAKTAQ 158 (198)
Q Consensus 93 ~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (198)
+++++++.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++..++ +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 6888887754 57899999999998642 23777888999999987 99999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 048059 159 NINELFYEIAKRLAR 173 (198)
Q Consensus 159 ~i~~~~~~l~~~~~~ 173 (198)
|++++|+.+++.+..
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988753
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=8.6e-33 Score=194.66 Aligned_cols=164 Identities=21% Similarity=0.257 Sum_probs=141.6
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
...+||+++|.+|||||||+++++++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35699999999999999999999999988 78889988887777777888888899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFY 165 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 165 (198)
++|||++++++++.+..|+..+... .+.|+++|+||+|+...+.....+..++++.+++ .++++||++|.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999998888765332 4689999999999965554444556777888887 479999999999999999
Q ss_pred HHHHHHHh
Q 048059 166 EIAKRLAR 173 (198)
Q Consensus 166 ~l~~~~~~ 173 (198)
.|.+.+..
T Consensus 160 ~l~~~~~~ 167 (169)
T cd01892 160 KLATAAQY 167 (169)
T ss_pred HHHHHhhC
Confidence 99998763
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=3.3e-32 Score=190.22 Aligned_cols=159 Identities=42% Similarity=0.714 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++|++..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887778888888877777777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
|++++.+++.+..|+..+.... ....|+++++||+|+. .+....++...++...+++++++||++|.|++++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999999888764 4678999999999986 4455677888999999999999999999999999999987
Q ss_pred H
Q 048059 170 R 170 (198)
Q Consensus 170 ~ 170 (198)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 82
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=1.7e-32 Score=203.14 Aligned_cols=160 Identities=28% Similarity=0.483 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|.+|||||||+++|+++.+...+.+|++ ++....+.+++..+.+.||||+|++.+..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988877888876 444566778888899999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 048059 91 DISNMDTFNRANKLVQELQRQ---------GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNI 160 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 160 (198)
|++++++|+.+..|++.+... ...+.|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888653 235789999999999977677777888877764 4688999999999999
Q ss_pred HHHHHHHHHHH
Q 048059 161 NELFYEIAKRL 171 (198)
Q Consensus 161 ~~~~~~l~~~~ 171 (198)
+++|++|...+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=3.3e-32 Score=191.59 Aligned_cols=162 Identities=28% Similarity=0.578 Sum_probs=143.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..+++.++.+++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 37899999999999999999999888777778777554 56667778888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l 167 (198)
||++++++++.+..|...+.... ..+.|+++++||.|+...+....++...+++.++ ++++++||+++.|++++|.++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999988887642 3578999999999998777777788888888887 799999999999999999999
Q ss_pred HHHHH
Q 048059 168 AKRLA 172 (198)
Q Consensus 168 ~~~~~ 172 (198)
+..+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98664
No 84
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.6e-32 Score=190.04 Aligned_cols=153 Identities=21% Similarity=0.394 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988876665554 3333 45677888888999999999975 34678899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLD--SQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|++++.+|+.+..|+..+..... ...|+++|+||.|+. ..+.+..+++..+++.. ++.|++|||++|.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987643 668999999999985 35678888888999876 589999999999999999999
Q ss_pred HHHH
Q 048059 167 IAKR 170 (198)
Q Consensus 167 l~~~ 170 (198)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=2.3e-32 Score=191.86 Aligned_cols=160 Identities=29% Similarity=0.523 Sum_probs=137.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcccchhhhcCCCeEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 90 (198)
||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+||+||++. ....+..+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998877666767765444 45567788888999999999885 3455778899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC-CCHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA-QNINELFYEI 167 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l 167 (198)
|++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..+++..+++++++||++| .|++++|+.|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887753 357899999999999777777888889999999999999999999 4999999999
Q ss_pred HHHHH
Q 048059 168 AKRLA 172 (198)
Q Consensus 168 ~~~~~ 172 (198)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=5.9e-32 Score=191.19 Aligned_cols=157 Identities=25% Similarity=0.464 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|+|||||+.++.++.+...+.++. .+.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999988888777775 3444556777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIETSAKT 156 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (198)
|++++++++.+. .|+..+.... ...|+++++||.|+.. ++.+..+++..+++..++ +++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999984 6888887643 4689999999999853 456778889999999887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 048059 157 AQNINELFYEIAK 169 (198)
Q Consensus 157 ~~~i~~~~~~l~~ 169 (198)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 87
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=6.2e-32 Score=191.17 Aligned_cols=159 Identities=26% Similarity=0.456 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999888777777765443 445667888888999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAKT 156 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (198)
|++++++++.+. .|+..+... ..+.|+++++||.|+... +.+..+++..+++..++ +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999885 688877765 577899999999998532 35677888999999986 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 048059 157 AQNINELFYEIAKRL 171 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~ 171 (198)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998876
No 88
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.8e-31 Score=187.95 Aligned_cols=164 Identities=40% Similarity=0.694 Sum_probs=145.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...++|+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 44699999999999999999999988877777788887777777788888889999999999999999899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||++++.+++.+..|+..+........|+++++||+|+...+++..+....+.+...++++++||++|.|++++|++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999988877665678999999999998777777777788888788899999999999999999999
Q ss_pred HHHH
Q 048059 168 AKRL 171 (198)
Q Consensus 168 ~~~~ 171 (198)
...+
T Consensus 165 ~~~~ 168 (169)
T cd04114 165 ACRL 168 (169)
T ss_pred HHHh
Confidence 8764
No 89
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=9.3e-32 Score=196.82 Aligned_cols=163 Identities=28% Similarity=0.385 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc-CCCeEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR-GAAAAVV 88 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~ 88 (198)
+||+++|++|||||||+++|..+.+. ..+.++.+.++....+.+.+....+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999888776 56667666566677778888889999999999972 23345566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887753 3578999999999998777788888888998889999999999999999999999
Q ss_pred HHHHHhhC
Q 048059 168 AKRLARVS 175 (198)
Q Consensus 168 ~~~~~~~~ 175 (198)
+..+....
T Consensus 159 ~~~~~~~~ 166 (221)
T cd04148 159 VRQIRLRR 166 (221)
T ss_pred HHHHHhhh
Confidence 99886443
No 90
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=1e-31 Score=186.61 Aligned_cols=158 Identities=48% Similarity=0.840 Sum_probs=145.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||+..+...+..+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|++++++++.+..|+..+........|+++++||+|+........++...++...+++++++||+++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999999887657789999999999975666778889999998899999999999999999999986
No 91
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=2.3e-31 Score=190.38 Aligned_cols=173 Identities=31% Similarity=0.529 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
.||+|+|++|+|||||++++..+.+...+.++....+. ..+.+.+..+.+.+||++|++.+....+.++..+++++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 58999999999999999999988777666666655443 34556777788999999999988887778889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS----------QREVPTEEGEQFSQENGM-FYIETSAKTAQ 158 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (198)
|+++.++++.+. .|+..+.... ++.|+++|+||+|+.. .+.+..+++..+++..++ +++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999996 6888887654 4699999999999853 344556788889999885 89999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCcC
Q 048059 159 NINELFYEIAKRLARVSPPKRSGINLNPETPERKGFCCL 197 (198)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 197 (198)
|++++|+++.+.+....+ .+-.-+||+
T Consensus 160 ~v~~~f~~l~~~~~~~~~------------~~~~~~~~~ 186 (187)
T cd04129 160 GVDDVFEAATRAALLVRK------------SEPGAGCCI 186 (187)
T ss_pred CHHHHHHHHHHHHhcccC------------cccccCccc
Confidence 999999999987755444 234678886
No 92
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.6e-34 Score=182.97 Aligned_cols=161 Identities=38% Similarity=0.678 Sum_probs=150.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059 15 LLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS 93 (198)
Q Consensus 15 v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (198)
++|++++|||+|+-++..+.+- ....+|.|.++..+.+..+++.+++++|||+|++++++...+|++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999888877665 456789999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 94 NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
+..||++.+.|+..+.++....+.+.+++||+|+..++.+..++.+.+++.+++|++++||++|.|++..|-.|.+.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999877778889999999998889999999999999999999999999999999999999998876
Q ss_pred hC
Q 048059 174 VS 175 (198)
Q Consensus 174 ~~ 175 (198)
..
T Consensus 162 ~~ 163 (192)
T KOG0083|consen 162 LK 163 (192)
T ss_pred hc
Confidence 54
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=5.8e-31 Score=184.23 Aligned_cols=162 Identities=31% Similarity=0.609 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++++...+...+.++.+..+ ......++..+.+.+||+||+..+...+..+++.+++++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777777766544 455567778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+...+....++...++..++++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887753 357899999999999765566677788888889999999999999999999999998
Q ss_pred HHHh
Q 048059 170 RLAR 173 (198)
Q Consensus 170 ~~~~ 173 (198)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7754
No 94
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.2e-31 Score=190.14 Aligned_cols=167 Identities=33% Similarity=0.610 Sum_probs=153.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|.+|+|||+|..++.+..+...+.||++ +.+.+.+.+++..+.+.|+||+|++.+..+...++.+++++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 368999999999999999999999999999999998 5557778888999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
||+++++.||+.+..+++.+.+. .....|+++||||+|+...+.+..++++.++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 99999999999999999999553 34668999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 048059 168 AKRLARVSP 176 (198)
Q Consensus 168 ~~~~~~~~~ 176 (198)
++.+.....
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 998877443
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=1.2e-30 Score=185.63 Aligned_cols=165 Identities=30% Similarity=0.551 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
.||+++|++|+|||||++++++..+...+.++.+..+ ...+...+..+.+.+||+||++++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887766777765544 445566777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
|.++..+++.+..|+..+.+.. ..+.|+++++||+|+...+....++...++..++++++++||+++.|+.++|.+|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998888887653 356899999999999766666777778888888999999999999999999999999
Q ss_pred HHHhhCC
Q 048059 170 RLARVSP 176 (198)
Q Consensus 170 ~~~~~~~ 176 (198)
.+.....
T Consensus 161 ~~~~~~~ 167 (180)
T cd04137 161 EIEKVEN 167 (180)
T ss_pred HHHHhcC
Confidence 8876654
No 96
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=7.5e-31 Score=182.88 Aligned_cols=158 Identities=33% Similarity=0.617 Sum_probs=139.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|++|||||||++++++..+...+.++.+ +.........+..+.+++||+||++.+...+..+++++|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777766 4445566667677899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
++++++++.+..|+..+..... ...|+++++||+|+...+....+.+..++..++++++++|++++.|++++|++|++.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888887654 578999999999998767777888999999889999999999999999999999875
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.98 E-value=2.4e-30 Score=183.18 Aligned_cols=159 Identities=31% Similarity=0.506 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
.||+++|++|||||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999999888778888776553 45567788889999999999999999888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSAKT 156 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (198)
|++++++++.+. .|+..+... ..+.|+++++||+|+... ..+...+++.++...+. ++++|||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999885 687777654 357899999999998532 23456778888887775 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 048059 157 AQNINELFYEIAKRL 171 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~ 171 (198)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=1.2e-30 Score=188.27 Aligned_cols=164 Identities=24% Similarity=0.422 Sum_probs=135.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|++|||||||+++++++.+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666664 3345566777778899999999999998888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDS-QREVPTEEGEQFSQ-ENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
++++.+++.+..|+..+..... .+.|+++++||.|+.. .+.+..+....... ..+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877543 5789999999999865 34455545444443 4567899999999999999999999
Q ss_pred HHHHhhCC
Q 048059 169 KRLARVSP 176 (198)
Q Consensus 169 ~~~~~~~~ 176 (198)
+.+.....
T Consensus 160 ~~~~~~~~ 167 (198)
T cd04147 160 RQANLPYN 167 (198)
T ss_pred HHhhcccc
Confidence 97764333
No 99
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=4.9e-31 Score=185.51 Aligned_cols=154 Identities=22% Similarity=0.374 Sum_probs=123.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|..+.+. .+.+|.+.++.. +. ...+.+++|||+|++++..+++.+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999876654 456777766532 22 246789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 162 (198)
|||++++.+++.+..|+..+... ...+.|++||+||+|+... +..+++..+.. ...+.++++||++|.|+++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 99999999999888777666542 2356899999999998542 34556665542 1235789999999999999
Q ss_pred HHHHHHH
Q 048059 163 LFYEIAK 169 (198)
Q Consensus 163 ~~~~l~~ 169 (198)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 100
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=1.4e-30 Score=185.23 Aligned_cols=160 Identities=20% Similarity=0.309 Sum_probs=124.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+..+||+++|++|||||||++++..+.+. .+.||.+.+... +....+.+.+||+||++.++.+|..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 44689999999999999999999877765 456777765432 2334578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-----GMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++.+..++..+... ...+.|++|++||.|+.... ..++..+...-. .+.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998887776666432 23568999999999986533 233333322111 1246689999999999
Q ss_pred HHHHHHHHHHHhh
Q 048059 162 ELFYEIAKRLARV 174 (198)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (198)
++|+||.+.+..+
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=2e-31 Score=186.83 Aligned_cols=153 Identities=20% Similarity=0.305 Sum_probs=127.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
.|+++|++|||||||+++|.++.+...+.||.+... ..++...+.+.+||++|++.+..+|..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999998877777788887543 2345567889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCeEEEEccCC------CCCHH
Q 048059 92 ISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT----EEGEQFSQENGMFYIETSAKT------AQNIN 161 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~ 161 (198)
.+++.+++.+..|+..+.... .+.|+++|+||.|+...+.+.. ..+..++++.++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999988888876543 6789999999999876554321 234556666788999999988 99999
Q ss_pred HHHHHHHH
Q 048059 162 ELFYEIAK 169 (198)
Q Consensus 162 ~~~~~l~~ 169 (198)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.1e-30 Score=182.61 Aligned_cols=157 Identities=25% Similarity=0.392 Sum_probs=127.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|++|||||||+++|.+..+. .+.+|.+..+.. +....+.+.+||+||++.+...|..+++++|+++||||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999987654 366777655532 23346789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG------MFYIETSAKTAQNINELF 164 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 164 (198)
++++++++.+..|+..+.+. ...+.|++|++||+|+.. .+..+++..++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999998888887653 234579999999999853 355666666654322 368899999999999999
Q ss_pred HHHHHHHHhhC
Q 048059 165 YEIAKRLARVS 175 (198)
Q Consensus 165 ~~l~~~~~~~~ 175 (198)
+||.+.+.+..
T Consensus 154 ~~l~~~~~~~~ 164 (169)
T cd04158 154 DWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHhhcc
Confidence 99998877654
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.7e-31 Score=187.35 Aligned_cols=157 Identities=21% Similarity=0.347 Sum_probs=123.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+..+||+++|++|||||||++++..+.+. .+.||.+.++.. +.. ..+.+.+||++|++.+..+|..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34699999999999999999999877663 466777766532 222 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++....|+..+... ...+.|++||+||+|+.... ..++..... +...+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999988877776543 23568999999999986432 223322222 1223457789999999999
Q ss_pred HHHHHHHHHH
Q 048059 162 ELFYEIAKRL 171 (198)
Q Consensus 162 ~~~~~l~~~~ 171 (198)
++|+||...+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=3.8e-31 Score=184.52 Aligned_cols=152 Identities=20% Similarity=0.359 Sum_probs=118.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|.+|||||||++++..+.+. .+.||.+.+.. .+. ...+.+.+||++|++++..++..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877765 46677776543 222 24678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHH-HHHHH----HcCCeEEEEccCCCCCHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEG-EQFSQ----ENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
|++++.+++++..|+..+... ...+.|++|++||+|+.... ..++. ..+.. ..++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988777666432 23468999999999985432 22222 22211 224467899999999999999
Q ss_pred HHHHH
Q 048059 165 YEIAK 169 (198)
Q Consensus 165 ~~l~~ 169 (198)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2.4e-30 Score=184.44 Aligned_cols=164 Identities=24% Similarity=0.320 Sum_probs=130.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
.+||+++|++|||||||++++..+.+.. ..++.+.+.....+.. .+..+.+.+|||+|++.+..+|..+++++|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 5899999999999999999999877654 3577776655555443 3467889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCeEEEEccCCCCCHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE------NGMFYIETSAKTAQNIN 161 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~ 161 (198)
|||++++.+++.+..|+..+... ...+.|+++++||+|+... ...++...+... .+++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 99999999999888888777653 2356899999999998542 333444444321 13568999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 048059 162 ELFYEIAKRLARVSP 176 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~ 176 (198)
+++++|.+.+.+..+
T Consensus 160 ~l~~~l~~~l~~~~~ 174 (183)
T cd04152 160 EGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998865544
No 106
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=5.3e-31 Score=184.46 Aligned_cols=167 Identities=27% Similarity=0.477 Sum_probs=150.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
...+|++|+|+.++|||+|+..++.+.++..+.||.-.++ ...+.++ ++.+.+.+|||+|++.|..+++..+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3569999999999999999999999999999999987554 5666774 9999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEEE
Q 048059 87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIET 152 (198)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 152 (198)
+++|++.+++|++++ ..|+..+..+. ++.|+++||+|.||.. ...+..+++.+++++.|+ .|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999998 68999998886 7899999999999963 246788999999999995 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 153 SAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
||++..|++++|+..+..+....+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998887765
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=8.4e-31 Score=186.56 Aligned_cols=160 Identities=22% Similarity=0.341 Sum_probs=123.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|++|||||||++++..+.+.. +.||.+.++.. + ....+.+.+||++|++.++.+|..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998776653 56777765532 2 235578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++....++..+... ...+.|++|++||.|+.... ..++...... ...+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999887766666432 23467999999999985422 2233222211 122357799999999999
Q ss_pred HHHHHHHHHHHhh
Q 048059 162 ELFYEIAKRLARV 174 (198)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (198)
++|+||.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=3.5e-29 Score=182.87 Aligned_cols=167 Identities=27% Similarity=0.499 Sum_probs=145.2
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA 84 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 84 (198)
......+||+++|++|||||||++++..+.+...+.++.+.++....+...+..+.+.+||++|++.+..++..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34555799999999999999999988888888888999998888877777888999999999999999999999999999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
++++|||+++..++..+..|+..+.... .+.|+++++||+|+... .... +...++...++.++++||++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887654 56899999999998542 3333 3346777788999999999999999999
Q ss_pred HHHHHHHHhh
Q 048059 165 YEIAKRLARV 174 (198)
Q Consensus 165 ~~l~~~~~~~ 174 (198)
.+|.+.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999988754
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2e-29 Score=177.68 Aligned_cols=157 Identities=29% Similarity=0.551 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++|+++.+...+.++..... .......+..+.+++||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999888666666665443 445566788889999999999988888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-eEEEEccCCC
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR-----------EVPTEEGEQFSQENGM-FYIETSAKTA 157 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (198)
|+++++++.... .|+..+.... .+.|+++|+||+|+.... .+..+++..++..+++ +++++||++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999998774 5777776654 478999999999986443 3456778888888888 9999999999
Q ss_pred CCHHHHHHHHHH
Q 048059 158 QNINELFYEIAK 169 (198)
Q Consensus 158 ~~i~~~~~~l~~ 169 (198)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=1.6e-29 Score=181.73 Aligned_cols=160 Identities=18% Similarity=0.321 Sum_probs=132.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-----CcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-----EATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+||+++|++|||||||++++.++.+...+.+|++.++..+.+.+. +..+.+.||||+|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888999887777766664 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-------------------CCCceEEEEEeCCCCCCCCCCCHH----HHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG-------------------NQIVVMALAANKSDLDSQREVPTE----EGEQFS 142 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~iiv~nK~Dl~~~~~~~~~----~~~~~~ 142 (198)
+|+|||++++.+++.+..|+..+.... ..+.|++|||||.|+..++.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999987642 246899999999999766544433 345678
Q ss_pred HHcCCeEEEEccCCCC----------CHHHHHHHHHHH
Q 048059 143 QENGMFYIETSAKTAQ----------NINELFYEIAKR 170 (198)
Q Consensus 143 ~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 170 (198)
++.+++.++.++++.. -+...|+.++++
T Consensus 161 ~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 161 EQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 8899998888887642 255556555543
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=9.4e-30 Score=179.91 Aligned_cols=157 Identities=22% Similarity=0.289 Sum_probs=124.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
..+..++|+++|++|||||||+++|.+..+ ..+.++.+... ..+.++ .+.+.+||+||++.+..++..+++++|+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 84 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA 84 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 345679999999999999999999997743 34556666433 333343 4778999999999999899999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQN 159 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 159 (198)
+++|||++++.+++....|+..+... ...+.|+++|+||+|+.... ..++...+.. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 99999999999999888887776542 23678999999999986533 3455555443 2467899999999999
Q ss_pred HHHHHHHHHH
Q 048059 160 INELFYEIAK 169 (198)
Q Consensus 160 i~~~~~~l~~ 169 (198)
++++|++|+.
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.8e-29 Score=175.69 Aligned_cols=160 Identities=28% Similarity=0.355 Sum_probs=125.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|.+|||||||+++|.++.+...+..+. ... .....+.+..+.+.+|||+|.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999988765543322 222 333455677889999999999888877888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHH
Q 048059 91 DISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENG--MFYIETSAKTAQNINELFY 165 (198)
Q Consensus 91 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 165 (198)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.... ..+....++..++ .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 6888777654 47899999999999655432 1233333333332 3799999999999999999
Q ss_pred HHHHHHHh
Q 048059 166 EIAKRLAR 173 (198)
Q Consensus 166 ~l~~~~~~ 173 (198)
.+...+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887653
No 113
>PTZ00099 rab6; Provisional
Probab=99.97 E-value=2.8e-28 Score=172.28 Aligned_cols=147 Identities=41% Similarity=0.670 Sum_probs=131.7
Q ss_pred CCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC
Q 048059 33 GQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG 112 (198)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 112 (198)
+.+...+.+|+|.++..+.+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 34667788999999988888889999999999999999999999999999999999999999999999999999887765
Q ss_pred CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCCCC
Q 048059 113 NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPPKR 179 (198)
Q Consensus 113 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~ 179 (198)
....|++||+||+|+...+.+..+++..++..+++.++++||++|.|++++|++|++.+.+....++
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~~~ 149 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSNS 149 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccccCC
Confidence 5678999999999997777788888999999999999999999999999999999999977554443
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.97 E-value=1.1e-29 Score=178.63 Aligned_cols=153 Identities=23% Similarity=0.213 Sum_probs=120.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
+|+++|++|||||||++++.+. +...+.+|.+... ..+.. ..+.+++||+||++.++.+|..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 5666778877653 23333 45788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCH-H---HHHHHHHHc--CCeEEEEccCCC------C
Q 048059 92 ISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPT-E---EGEQFSQEN--GMFYIETSAKTA------Q 158 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~-~---~~~~~~~~~--~~~~~~~Sa~~~------~ 158 (198)
++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.... . ....++.+. .+.+++|||++| .
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 999999999999988887642 25789999999999865442111 0 112233222 356888999998 8
Q ss_pred CHHHHHHHHHH
Q 048059 159 NINELFYEIAK 169 (198)
Q Consensus 159 ~i~~~~~~l~~ 169 (198)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=2.1e-29 Score=176.06 Aligned_cols=152 Identities=19% Similarity=0.260 Sum_probs=118.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+|+++|++|||||||+++|++... ...+.++.+..... + ....+.+.+|||||++.+..++..++.++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 45566777754322 2 234678899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQ---GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 162 (198)
|++++.+++....|+..+... ...+.|+++++||+|+..... .++...... ...++++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 999999998888887777553 125689999999999864322 222222211 1234689999999999999
Q ss_pred HHHHHHH
Q 048059 163 LFYEIAK 169 (198)
Q Consensus 163 ~~~~l~~ 169 (198)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=2.2e-28 Score=173.07 Aligned_cols=154 Identities=23% Similarity=0.374 Sum_probs=120.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..++|+++|++|+|||||+++++.+.+.. ..++.+.++.. +.. ..+.+.+||+||++.+...|..++.++|++++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 36899999999999999999999877654 56777765432 222 35788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHH-HHHH----HHcCCeEEEEccCCCCCHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEG-EQFS----QENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~ 162 (198)
|||+++++++.....++..+... ...+.|+++++||+|+... ...++. ..+. ...+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999999988887666665443 2356899999999998542 223332 2222 23456799999999999999
Q ss_pred HHHHHHH
Q 048059 163 LFYEIAK 169 (198)
Q Consensus 163 ~~~~l~~ 169 (198)
+|++|..
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 117
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=6.5e-31 Score=177.97 Aligned_cols=170 Identities=26% Similarity=0.432 Sum_probs=159.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
-+..+|++|+|..++||||++++++.+.+...+..++|.++....+.+.+..+.+.+||++|++++.....+|+++|.+.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 35579999999999999999999999999999999999999888888888888889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
++||+.+|.+||+....|++.+.... ..+|.++|-||+|+.++..++..+++.+++++++.++.+|++...|+.++|..
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~Y 175 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAY 175 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999998875 56899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 048059 167 IAKRLARVSPP 177 (198)
Q Consensus 167 l~~~~~~~~~~ 177 (198)
|++++.+..++
T Consensus 176 LaeK~~q~~kq 186 (246)
T KOG4252|consen 176 LAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHH
Confidence 99998877665
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=1.9e-28 Score=171.02 Aligned_cols=152 Identities=25% Similarity=0.390 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
+|+++|++|||||||++++.++.+.. ..++.+.+.. .+.. ...+.+.+||++|++.+...+..++.++|++++|||
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887653 4566665543 2223 345789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHH------HHHcCCeEEEEccCCCCCHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQF------SQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
.+++.+++.+..|+..+... ...+.|+++++||+|+.... ..++.... +...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99999998888777776543 22578999999999985422 22222222 22234579999999999999999
Q ss_pred HHHHH
Q 048059 165 YEIAK 169 (198)
Q Consensus 165 ~~l~~ 169 (198)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=4.9e-28 Score=173.58 Aligned_cols=156 Identities=23% Similarity=0.280 Sum_probs=124.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...++|+++|++|||||||++++.+..+. .+.++.+... ..+.++ .+.+.+||+||+..+...|..+++++|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45789999999999999999999987753 4566666543 233333 367889999999999899999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------cCCeEE
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQE----------------NGMFYI 150 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~ 150 (198)
+|+|.++.++++....|+..+.... ..+.|+++++||+|+.. .+..++.+.+... ..+.++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 9999999999988877777766532 35689999999999853 4455666665542 234689
Q ss_pred EEccCCCCCHHHHHHHHHHH
Q 048059 151 ETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~ 170 (198)
+|||++|.|++++|+||...
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999764
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=5.5e-28 Score=169.79 Aligned_cols=152 Identities=22% Similarity=0.332 Sum_probs=117.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQF------YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+|+++|++|+|||||+++|.+... ...+.++.+.+.. .+.+ ....+.+||+||++.+...+..++.++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999986432 2233455554442 2233 35788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccCCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-------NGMFYIETSAKTA 157 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~ 157 (198)
+++|+|++++++++....|+..+.+. ...+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 99999999998898888887776653 2357899999999998543 333444444332 2468999999999
Q ss_pred CCHHHHHHHHHH
Q 048059 158 QNINELFYEIAK 169 (198)
Q Consensus 158 ~~i~~~~~~l~~ 169 (198)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999865
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=8.6e-28 Score=180.88 Aligned_cols=170 Identities=23% Similarity=0.393 Sum_probs=136.2
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-------------CcEEEEEEEeCCCchhh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-------------EATVKFDIWDTAGQERY 72 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~~ 72 (198)
+....+||+|+|..|||||||+++|.++.+...+.+|+|.++....+.++ +..+.++||||+|++.|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 45567999999999999999999999998888888999988776666654 25688999999999999
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC------------CCceEEEEEeCCCCCCCC---C---CC
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN------------QIVVMALAANKSDLDSQR---E---VP 134 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~Dl~~~~---~---~~ 134 (198)
..++..++++++++|+|||+++..+++.+..|+..+..... .+.|++||+||+|+...+ . +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~ 176 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL 176 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence 99999999999999999999999999999999999987531 358999999999996542 2 35
Q ss_pred HHHHHHHHHHcCCe-E---E------------EEccCCC----CCHHHHHHHHHHHHHhhC
Q 048059 135 TEEGEQFSQENGMF-Y---I------------ETSAKTA----QNINELFYEIAKRLARVS 175 (198)
Q Consensus 135 ~~~~~~~~~~~~~~-~---~------------~~Sa~~~----~~i~~~~~~l~~~~~~~~ 175 (198)
.++++.++++.++. . + ...|+.+ +-+...|..|++.-+-..
T Consensus 177 ~e~a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (334)
T PLN00023 177 VDAARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSD 237 (334)
T ss_pred HHHHHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcc
Confidence 78999999998742 1 1 1123322 346777877777554433
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=1.7e-28 Score=171.01 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=114.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|++++|||||+++|..+.+. ...++.+.+.. .+ ....+.+++|||||++.+..+|..++..+|++|+|||
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999877654 34566665543 22 2345789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
++++.++.....++..+.. ....+.|+++++||+|+.... ...+...... ..+++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998888776555544433 333568999999999986432 2222222211 1235799999999999999999
Q ss_pred HHHH
Q 048059 166 EIAK 169 (198)
Q Consensus 166 ~l~~ 169 (198)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=4.4e-28 Score=168.87 Aligned_cols=151 Identities=25% Similarity=0.342 Sum_probs=119.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
||+++|.+|||||||++++++.. ...+.++.+..... +.+ ..+.+.+||+||++.+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999887 34455666655432 223 35678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+++++++..+..|+..+.... ..+.|+++++||+|+.... ..++...... ...++++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888877776642 3578999999999986543 2333333322 2356899999999999999999
Q ss_pred HHHH
Q 048059 166 EIAK 169 (198)
Q Consensus 166 ~l~~ 169 (198)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.1e-27 Score=169.40 Aligned_cols=158 Identities=27% Similarity=0.397 Sum_probs=124.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....++|+++|+.|||||||++++..+... ...||.|.+.. .+.+ ..+.+.+||.+|+..++..|+.++.++|++
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~--~i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE--EIKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE--EEEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc--eeee--CcEEEEEEeccccccccccceeecccccee
Confidence 366899999999999999999999876533 35667675543 3333 446788999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH------HcCCeEEEEccCCCCC
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ------ENGMFYIETSAKTAQN 159 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 159 (198)
|||+|.++.+.+.+....+..+... .....|++|++||.|+.. ....++...... ...+.++.|||.+|+|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999998888887666666553 336789999999999764 334455544332 2345689999999999
Q ss_pred HHHHHHHHHHHH
Q 048059 160 INELFYEIAKRL 171 (198)
Q Consensus 160 i~~~~~~l~~~~ 171 (198)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 125
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=2.4e-27 Score=158.36 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=129.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.+.+++|+++|..||||||++++|.+.. .....||.|....... .+.+.+++||.+|+...++.|+.||+.+|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4558999999999999999999999766 4556677775544333 3567899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCC---C-HHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREV---P-TEEGEQFSQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~---~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (198)
|+|+|.+|+..+++....+..+.. ..-...|++|++||.|+...-.. . .-....+++..+++++.|||.+|+++.
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~ 167 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL 167 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence 999999999998877655554433 22245799999999998732211 1 122345556778999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 048059 162 ELFYEIAKRLARV 174 (198)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (198)
+.++||++.++++
T Consensus 168 ~gidWL~~~l~~r 180 (185)
T KOG0073|consen 168 EGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=3.4e-27 Score=168.35 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=120.4
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...++|+++|++|||||||++++.++.+. .+.++.+.+.. .+.. ..+++.+||+||++.+...|..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 44699999999999999999999987653 34455554332 2223 3477899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE------------NGMFYIETSA 154 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 154 (198)
+|+|++++.+++....++..+... ...+.|+++++||+|+.. .+..+++.+.... ..+.+++|||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999999998887777766542 235689999999999853 3344444433311 2345899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 048059 155 KTAQNINELFYEIAKR 170 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (198)
++|.|++++++||..+
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=2.7e-26 Score=163.00 Aligned_cols=154 Identities=20% Similarity=0.259 Sum_probs=114.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCC------cceeEEEEEEEe-----CCcEEEEEEEeCCCchhhc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ-------FYDQQEPT------IGAAFFTQILSL-----SEATVKFDIWDTAGQERYH 73 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~-------~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~ 73 (198)
+|+++|++++|||||+++|++.. +...+.++ .|.++....... ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998732 11122222 233443333222 5667889999999999999
Q ss_pred ccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---eEE
Q 048059 74 SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM---FYI 150 (198)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 150 (198)
..+..++..+|++|+|||+++..+.+....|.... ..+.|+++++||+|+.... ..+...++++.+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999877666666554332 2357899999999985422 22334566666666 389
Q ss_pred EEccCCCCCHHHHHHHHHHHH
Q 048059 151 ETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
++||++|.|++++|++|...+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998765
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=1.4e-26 Score=160.88 Aligned_cols=152 Identities=25% Similarity=0.378 Sum_probs=120.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
.|+++|++|||||||+++|.+..+...+.++.+.+... +..+ .+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999998888888888766543 2233 3779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHHH
Q 048059 92 ISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+++..++.....|+..+... ...+.|+++++||.|+..... .+...... ....++++++|+++|.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99998888887776666542 225679999999999865332 12221111 12346789999999999999999
Q ss_pred HHHH
Q 048059 166 EIAK 169 (198)
Q Consensus 166 ~l~~ 169 (198)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9865
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=5.7e-26 Score=159.71 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=107.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---------cchhhhcC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---------LAPMYYRG 82 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~ 82 (198)
+|+++|++|+|||||+++|++..+.....+. .+............+.+.+|||||...... ........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999987654322111 111122222233457899999999742110 01111233
Q ss_pred CCeEEEEEECCChhhH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 83 AAAAVVVYDISNMDTF--NRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
+|++|+|+|+++..++ +....|+..+.... .+.|+++++||+|+.....+. ....+....+++++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence 6899999999887653 55567777776543 468999999999986544332 245555656789999999999999
Q ss_pred HHHHHHHHHHH
Q 048059 161 NELFYEIAKRL 171 (198)
Q Consensus 161 ~~~~~~l~~~~ 171 (198)
+++++++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=7.7e-26 Score=159.79 Aligned_cols=154 Identities=21% Similarity=0.293 Sum_probs=116.7
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+....++|+++|++|||||||++++.+..+. ...++.+.+.. .+... ...+.+||++|+..+...+..+++++|+
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3445799999999999999999999986543 34566664432 23333 3678899999999888889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--------MFYIETSAKT 156 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 156 (198)
+++|+|+++..++.....++..+... .....|+++++||+|+..... .+ .+....+ ++++++||++
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~---~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AE---EIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HH---HHHHHcCCcccCCCeEEEEEeECCC
Confidence 99999999988888877666655442 235689999999999854322 22 2223233 2478999999
Q ss_pred CCCHHHHHHHHHH
Q 048059 157 AQNINELFYEIAK 169 (198)
Q Consensus 157 ~~~i~~~~~~l~~ 169 (198)
|.|++++|+||++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 131
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-26 Score=157.57 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=130.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
...+.+|+++|.-++||||++.+|..++.... .||+|.+.....+ +++.+++||.+|+++++.+|++|+.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 45689999999999999999999998776555 8999987666554 378899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (198)
|||+|.+|++.+..+..-+..+.... .+..|+++.+||.|++..-. ++......-.....+.+..|+|.+|+|+.+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 99999999999988866555555543 37899999999999875433 222222222223456788999999999999
Q ss_pred HHHHHHHHHHhh
Q 048059 163 LFYEIAKRLARV 174 (198)
Q Consensus 163 ~~~~l~~~~~~~ 174 (198)
.++||...+..+
T Consensus 169 gl~wl~~~~~~~ 180 (181)
T KOG0070|consen 169 GLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHhcc
Confidence 999999887543
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=6.7e-26 Score=159.59 Aligned_cols=157 Identities=19% Similarity=0.159 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----hhcccchhhh---cCCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----RYHSLAPMYY---RGAA 84 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~---~~~d 84 (198)
+|+++|++|||||||+++|.+........+..........+...+ ...+.+|||||.. ....+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997553211111111111111222222 2478899999963 2222333433 4699
Q ss_pred eEEEEEECCCh-hhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCH
Q 048059 85 AAVVVYDISNM-DTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNI 160 (198)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i 160 (198)
++++|+|++++ .+++.+..|.+.+..... ...|+++|+||+|+...... .+....+... .+.+++++||+++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788999999888876532 36799999999998654443 3445555555 3788999999999999
Q ss_pred HHHHHHHHHH
Q 048059 161 NELFYEIAKR 170 (198)
Q Consensus 161 ~~~~~~l~~~ 170 (198)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=2.9e-25 Score=153.87 Aligned_cols=158 Identities=29% Similarity=0.466 Sum_probs=127.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++.+++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887777777777777666667777668899999999999999999999999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 90 YDISNM-DTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 90 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|.... .++.... .|...+........|+++++||.|+.... ........+......+++++||+++.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 6666554 66666666544478999999999986543 33334444444456689999999999999999986
Q ss_pred H
Q 048059 168 A 168 (198)
Q Consensus 168 ~ 168 (198)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 134
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=8.8e-25 Score=160.03 Aligned_cols=169 Identities=35% Similarity=0.480 Sum_probs=138.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|.+..+...+.++.+..+...........+++.+|||+|+++++.+++.++.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 34999999999999999999999999998888888877777776666668889999999999999999999999999999
Q ss_pred EEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCeEEEE
Q 048059 89 VYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQEN---GMFYIET 152 (198)
Q Consensus 89 v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 152 (198)
+||.++.. +.+....|...+........|+++++||+|+.... .............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 99999844 45566889999888765678999999999996553 33333333333322 3348999
Q ss_pred ccC--CCCCHHHHHHHHHHHHHhhCCC
Q 048059 153 SAK--TAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 153 Sa~--~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
|++ ++.++.++|..+...+.+....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 999 9999999999999998765443
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=1.2e-25 Score=162.87 Aligned_cols=157 Identities=24% Similarity=0.210 Sum_probs=112.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh---------hcccchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER---------YHSLAPM 78 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~ 78 (198)
...++|+|+|++|||||||++++++........+..+.+.....+.+.+. ..+.+|||||... +...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 34589999999999999999999987643322222222222333334332 3688999999732 11111 2
Q ss_pred hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ 158 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (198)
.+.++|++++|+|++++.+++....|...+......+.|+++|+||+|+...... .......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3568999999999999888888777777776654456899999999998553322 13445567789999999999
Q ss_pred CHHHHHHHHHHHH
Q 048059 159 NINELFYEIAKRL 171 (198)
Q Consensus 159 ~i~~~~~~l~~~~ 171 (198)
|+++++++|...+
T Consensus 192 gi~~l~~~L~~~~ 204 (204)
T cd01878 192 GLDELLEAIEELL 204 (204)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 136
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-24 Score=144.09 Aligned_cols=169 Identities=24% Similarity=0.355 Sum_probs=142.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-cccchhhhcCCCe
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY--DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-HSLAPMYYRGAAA 85 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~d~ 85 (198)
...||+++|..++|||+++.+|+.+... .+..+|+...+..-...-++..-.+.|+||.|...+ ..+-.+|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 3589999999999999999999976644 345677766555444455566678999999998777 6678889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+++||+..|++||+.++.+...|.... ...+|+++++||+|+.++++++.+.+..||+...+.++++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 999999999999998887766666643 3679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 048059 165 YEIAKRLARVSPP 177 (198)
Q Consensus 165 ~~l~~~~~~~~~~ 177 (198)
..+..++...+..
T Consensus 168 ~~l~~rl~~pqsk 180 (198)
T KOG3883|consen 168 TYLASRLHQPQSK 180 (198)
T ss_pred HHHHHhccCCccc
Confidence 9999988765553
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=2.9e-25 Score=155.29 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ---FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+.|+++|++|||||||+++|++.. +.....++.+.+.....+.+.. ...+.+|||||++.+......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 2222222223232233333332 457899999999988777777888999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCHHHHHHHHHH---cCCeEEEEccCCCCC
Q 048059 88 VVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPTEEGEQFSQE---NGMFYIETSAKTAQN 159 (198)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~ 159 (198)
+|+|+++ +++.+.+. .+... ...|+++++||+|+..... ...++..+..+. .+.+++++||+++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 33333222 22221 2248999999999864321 112333344443 467899999999999
Q ss_pred HHHHHHHHHH
Q 048059 160 INELFYEIAK 169 (198)
Q Consensus 160 i~~~~~~l~~ 169 (198)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 138
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=4.8e-25 Score=169.44 Aligned_cols=162 Identities=18% Similarity=0.093 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------hcccchhhhcCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-------YHSLAPMYYRGA 83 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~~ 83 (198)
..|.|+|.||||||||+++|+.........+..........+.+. ....+.+||+||... ....+-..++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 568999999999999999999765332222221111112222222 334688999999632 111223345689
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (198)
+++++|+|+++.++++++..|...+..+.. .+.|+++|+||+|+........+..+.++...+++++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988889999999988877533 467999999999986554444444555556677899999999999999
Q ss_pred HHHHHHHHHHHh
Q 048059 162 ELFYEIAKRLAR 173 (198)
Q Consensus 162 ~~~~~l~~~~~~ 173 (198)
+++++|.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 139
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.94 E-value=8.7e-26 Score=149.66 Aligned_cols=175 Identities=19% Similarity=0.390 Sum_probs=151.0
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA 84 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 84 (198)
..+...+||.++|++..|||||+-.+.++.++.++..+.|.++..+.+.+.+..+.+.+||.+|++++..+.+....++-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 35677899999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-----CCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-----QREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
+++|+||++.+.++..+..|+...+....... .++||||.|.-- ..+.....++.+++-.+++.++||+....|
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 99999999999999999999998776543334 457899999621 112224567888889999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCC
Q 048059 160 INELFYEIAKRLARVSPPKRS 180 (198)
Q Consensus 160 i~~~~~~l~~~~~~~~~~~~~ 180 (198)
++++|..+..++..-.-.-.+
T Consensus 174 v~KIFK~vlAklFnL~~ti~~ 194 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLPWTIPE 194 (205)
T ss_pred HHHHHHHHHHHHhCCceeccc
Confidence 999999999988765544333
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=8.3e-26 Score=154.70 Aligned_cols=134 Identities=18% Similarity=0.234 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-----hhcccchhhhcCCCeE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~ 86 (198)
||+++|++|||||||+++|.+..+ .+.++.+.++ . -.+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~-------~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY-------N-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE-------c-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 899999999999999999997654 2333332221 1 1589999972 2333333 47899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFY 165 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 165 (198)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+ +....++..++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999988754 3343321 138999999999864 34456677788877776 799999999999999999
Q ss_pred HHH
Q 048059 166 EIA 168 (198)
Q Consensus 166 ~l~ 168 (198)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 141
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=3.9e-24 Score=146.96 Aligned_cols=153 Identities=42% Similarity=0.720 Sum_probs=121.8
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059 15 LLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS 93 (198)
Q Consensus 15 v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (198)
|+|++|+|||||++++.+... .....++. .+..............+.+||++|...+...+..++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998776 44455555 6666666666677889999999999888888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 94 NMDTFNRANKLV-QELQRQGNQIVVMALAANKSDLDSQREVPTEE-GEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 94 ~~~s~~~~~~~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
++.+++....|+ ...........|+++++||+|+.......... .........++++++|+.++.|+.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999988888773 22333345678999999999986544433222 4455566778999999999999999999985
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=3.2e-25 Score=160.34 Aligned_cols=155 Identities=23% Similarity=0.254 Sum_probs=105.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC-----------chhhcccch
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG-----------QERYHSLAP 77 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~ 77 (198)
..++|+++|++|+|||||+++|++..+.....+ +.++....+... .+.+||||| ++.++..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 358999999999999999999998775544444 444444433333 588999999 466666666
Q ss_pred hhhc----CCCeEEEEEECCChhhH-H---------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 048059 78 MYYR----GAAAAVVVYDISNMDTF-N---------RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ 143 (198)
Q Consensus 78 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 143 (198)
.++. .++++++|+|.++...+ + .-..+...+. ..+.|+++|+||+|+.... .+...+++.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~ 155 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE 155 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence 6654 35788888887543221 0 0011122222 2467999999999985433 344566666
Q ss_pred HcCC---------eEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 144 ENGM---------FYIETSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 144 ~~~~---------~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
.+++ +++++||++| |+++++++|.+.+.+..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 6665 4799999999 999999999988755443
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=6.2e-24 Score=147.72 Aligned_cols=148 Identities=22% Similarity=0.202 Sum_probs=108.1
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhhc--CCCeE
Q 048059 15 LLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYYR--GAAAA 86 (198)
Q Consensus 15 v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--~~d~~ 86 (198)
|+|.+|+|||||++++++........++.+.+.....+.+.+ ..+.+|||||+..+.. ++..++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764444444444444444454543 4688999999876654 2455554 99999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
++|+|.++++... .|...+.. .+.|+++++||+|+.....+.. ....++..++++++++||+++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998765432 33333332 3579999999999965544433 346777778899999999999999999999
Q ss_pred HHHHH
Q 048059 167 IAKRL 171 (198)
Q Consensus 167 l~~~~ 171 (198)
|...+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98753
No 144
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=2.5e-24 Score=154.87 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK--GQFYDQQ------------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA 76 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 76 (198)
.+|+++|.+++|||||+++|+. +.+...+ ..+.+.++......+....+.+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4433322 1234555555555566677889999999999999999
Q ss_pred hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCCe
Q 048059 77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGMF 148 (198)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 148 (198)
..+++++|++++|||+++.. +.....++..+.. .+.|+++++||+|+...+. ...++..++.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2333334443332 3578999999999864332 12233444432 23678
Q ss_pred EEEEccCCCCCHHHH------HHHHHHHHHhh
Q 048059 149 YIETSAKTAQNINEL------FYEIAKRLARV 174 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~------~~~l~~~~~~~ 174 (198)
++++||++|.|+.+. +.+|+..+.+.
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 999999999776433 55555555543
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.1e-23 Score=147.87 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
.|+|+|++|+|||||+++|+.+.+.....++...+.....+... .....+.+|||||++.+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999877655433333332222222222 13567899999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-CHHHHHHHHH------HcCCeEEEEccCCCCCHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-PTEEGEQFSQ------ENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~ 163 (198)
|+++....+... .+..+.. .+.|+++++||+|+...... ..+....+.. ..+++++++|+++|.|+.++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743222111 1222222 45789999999998643211 0111111111 12368999999999999999
Q ss_pred HHHHHHHHH
Q 048059 164 FYEIAKRLA 172 (198)
Q Consensus 164 ~~~l~~~~~ 172 (198)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987653
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.7e-23 Score=162.01 Aligned_cols=153 Identities=23% Similarity=0.199 Sum_probs=108.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------hhcccchhhh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------RYHSLAPMYY 80 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~~ 80 (198)
.++|+++|.+|+|||||+|+|++........+....+.....+.+.+ ...+.+|||+|.. .+...+ ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 48999999999999999999998764332222222333344455532 2478899999972 222222 247
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+..... ..... ....+++++||++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCCH
Confidence 7999999999999998888877777666665445689999999999854221 11111 22346899999999999
Q ss_pred HHHHHHHHHH
Q 048059 161 NELFYEIAKR 170 (198)
Q Consensus 161 ~~~~~~l~~~ 170 (198)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=2.1e-23 Score=160.20 Aligned_cols=160 Identities=21% Similarity=0.173 Sum_probs=112.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh----cccch---hhhcC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY----HSLAP---MYYRG 82 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~---~~~~~ 82 (198)
-..|+|+|.|+||||||+++|+.........+..........+.+. ....+.+||+||.... ..+.. ..+..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 3679999999999999999999865332222211111112222333 2367899999997421 12222 33467
Q ss_pred CCeEEEEEECCCh---hhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059 83 AAAAVVVYDISNM---DTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA 157 (198)
Q Consensus 83 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (198)
++++++|+|+++. .+++++..|.+.+..... ...|++||+||+|+..... ..+..+.++..++.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999876 677888888877766432 4679999999999865432 234556666677889999999999
Q ss_pred CCHHHHHHHHHHHH
Q 048059 158 QNINELFYEIAKRL 171 (198)
Q Consensus 158 ~~i~~~~~~l~~~~ 171 (198)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998754
No 148
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=1.2e-23 Score=139.80 Aligned_cols=114 Identities=29% Similarity=0.530 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFY--DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
||+|+|++|||||||+++|.+.... ....+..+.++.............+.+||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998765 22334445555555666677776799999999999988888889999999999
Q ss_pred EECCChhhHHHHHH---HHHHHHHhCCCCceEEEEEeCCC
Q 048059 90 YDISNMDTFNRANK---LVQELQRQGNQIVVMALAANKSD 126 (198)
Q Consensus 90 ~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~iiv~nK~D 126 (198)
||++++++++.+.. |+..+.... .+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 99999999988754 455555543 5599999999998
No 149
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.2e-24 Score=138.91 Aligned_cols=157 Identities=23% Similarity=0.375 Sum_probs=125.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
+.++|+++|..++||||++..|..+. .....||.|++..... .+++++.+||.+|+++.+.+|.+|+.+..++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 47899999999999999999998765 4456688786655444 367889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHH-HHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHH
Q 048059 89 VYDISNMDTFNRANK-LVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 89 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~ 162 (198)
|+|..+...+++++. +...+....-...|++|++||.|++.... ..++..+. +...+-+.+++|.+|+|+.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999998888877754 44444444457789999999999976443 34444443 23456688999999999999
Q ss_pred HHHHHHHHHH
Q 048059 163 LFYEIAKRLA 172 (198)
Q Consensus 163 ~~~~l~~~~~ 172 (198)
-|.||...+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999987653
No 150
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=5.7e-24 Score=139.75 Aligned_cols=155 Identities=24% Similarity=0.380 Sum_probs=124.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+.+.++|..+||||||++.+..+.+...-.||.|.+.. .+....+.+.+||.||+.+++.+|+.|.+.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3578999999999999999999988888888888886532 344567788899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHH-HHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccCCCCC
Q 048059 89 VYDISNMDTFNRANKLVQE-LQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--------MFYIETSAKTAQN 159 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~ 159 (198)
++|+++++.++....-+.. +....-...|++|+|||.|+...-. . ..+..+.| +..|.+|+++..|
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 9999999988777544333 3344447799999999999865332 1 23333333 4578999999999
Q ss_pred HHHHHHHHHHHHH
Q 048059 160 INELFYEIAKRLA 172 (198)
Q Consensus 160 i~~~~~~l~~~~~ 172 (198)
++-+.+||+++-.
T Consensus 170 id~~~~Wli~hsk 182 (186)
T KOG0075|consen 170 IDITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998654
No 151
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.1e-23 Score=149.07 Aligned_cols=155 Identities=23% Similarity=0.200 Sum_probs=105.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----hcccc---hhhhcCCCeEE
Q 048059 15 LLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----YHSLA---PMYYRGAAAAV 87 (198)
Q Consensus 15 v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~---~~~~~~~d~~i 87 (198)
++|++|||||||+++|++........+..........+.+. ....+.+|||||... ...++ ...+.++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 58999999999999999876421111111111111222222 145678999999732 12222 23467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHHhCC-------CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059 88 VVYDISNM------DTFNRANKLVQELQRQGN-------QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 88 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
+|+|++++ .+++.+..|...+..... ...|+++|+||+|+..................+.+++++||
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 577777777777765432 36899999999998654443322223444455678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 048059 155 KTAQNINELFYEIAKR 170 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (198)
+++.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998764
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=7.7e-23 Score=154.06 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhcC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQ-QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYRG 82 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~ 82 (198)
+|+++|.+|||||||+|+|++...... ..+...... ...+... ...++.+|||||...... ....++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~-i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR-ISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc-EEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 689999999999999999998764321 111111111 1122222 234689999999743211 23345789
Q ss_pred CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 048059 83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNIN 161 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (198)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+..... ..+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999998876554 334444433 3579999999999853222 22334455444454 79999999999999
Q ss_pred HHHHHHHHHHHhh
Q 048059 162 ELFYEIAKRLARV 174 (198)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (198)
+++++|.+.+.+.
T Consensus 154 ~L~~~l~~~l~~~ 166 (270)
T TIGR00436 154 FLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHHHHhCCCC
Confidence 9999998877543
No 153
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=2.1e-23 Score=142.76 Aligned_cols=148 Identities=22% Similarity=0.272 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------ccchhhh--cC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------SLAPMYY--RG 82 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~--~~ 82 (198)
++|+++|.||||||||+|+|++........|..+.+.....+.+.+ ..+.++|+||.-... ..+..++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999886655556555555555555555 567899999952222 1223333 68
Q ss_pred CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059 83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (198)
.|++|+|+|+++.+. -..+...+.+ ...|+++++||+|....+.... ....+.+.++++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r---~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHH---HHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999986442 2233333433 3579999999999865544432 36777888999999999999999999
Q ss_pred HHHHH
Q 048059 163 LFYEI 167 (198)
Q Consensus 163 ~~~~l 167 (198)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99865
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=6.2e-23 Score=158.68 Aligned_cols=157 Identities=21% Similarity=0.292 Sum_probs=106.4
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcce--eEEEEEEEeCCcEEEEEEEeCCCchh-hcccc-------h
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGA--AFFTQILSLSEATVKFDIWDTAGQER-YHSLA-------P 77 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~-------~ 77 (198)
.+.++|+++|.+|||||||+++|++..+.. ..+..++ +.....+..+ ..++.||||||... +..+. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-vs~k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-VTPKVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-ccCCCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 456799999999999999999999877542 1222222 2222333333 35689999999843 22221 1
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEcc
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSA 154 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa 154 (198)
..+.++|++++|+|..+ +++... .|+..+... ..|+++|+||+|+... ......+++...+ ..++++||
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA 198 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA 198 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence 24679999999999764 444443 455555432 3466789999998542 2345555555443 57999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhC
Q 048059 155 KTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~~ 175 (198)
++|.|+++++++|...+.+..
T Consensus 199 ktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred cCccCHHHHHHHHHHhCCCCC
Confidence 999999999999988776543
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=9.1e-23 Score=141.50 Aligned_cols=146 Identities=22% Similarity=0.160 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhhhc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMYYR 81 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~ 81 (198)
++|+++|++|+|||||++++++..... ...+............. ....+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 689999999999999999999865321 12222222222223333 3457889999997544321 224567
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (198)
++|++++|+|++++.+......+.. ....|+++++||+|+...... .....+.+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998777766554433 356799999999998654432 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 048059 162 ELFYEIAKRL 171 (198)
Q Consensus 162 ~~~~~l~~~~ 171 (198)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 156
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=1.2e-22 Score=145.10 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc--------------ceeEEEEEEEeCCcEEEEEEEeCCCchhhcccch
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTI--------------GAAFFTQILSLSEATVKFDIWDTAGQERYHSLAP 77 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 77 (198)
+|+|+|.+|+|||||+++|++........... +.+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876554331111 1111122222233356789999999998888889
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHH-----------
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQE----------- 144 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~----------- 144 (198)
.++..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|+...... ..+...+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 999999999999999876544332 33333332 46799999999998642221 12223333332
Q ss_pred ---cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 145 ---NGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 145 ---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
...+++++||++|.|+++++++|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356899999999999999999999875
No 157
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2.1e-22 Score=165.28 Aligned_cols=158 Identities=21% Similarity=0.250 Sum_probs=117.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CcceeEEEEEEEe-----CCcEEEEEEEeCCCchh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ-------FYDQQEP------TIGAAFFTQILSL-----SEATVKFDIWDTAGQER 71 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~ 71 (198)
-.||+++|+.++|||||+++|+... +...+.. ..|.++....+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3689999999999999999998642 1112211 2245544433322 45668999999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---e
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM---F 148 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 148 (198)
|...+..+++.+|++|+|||+++..+.+....|...+. .+.|+++++||+|+.... ..+...++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998776666666654432 356899999999985422 12333455555665 4
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 149 YIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
++++||++|.|++++|++|.+.+..
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 8999999999999999999887643
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=9.6e-23 Score=164.30 Aligned_cols=154 Identities=21% Similarity=0.187 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchhhhcC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPMYYRG 82 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~ 82 (198)
.+|+|+|.+|||||||+++|++.... ....+.|.+..............+.+|||||.+. +...+..++.+
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence 68999999999999999999986542 2223334433333322222334678999999752 33445667889
Q ss_pred CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059 83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (198)
+|++|+|||+++..+... ..+...+.. .+.|+++|+||+|+.... .+....+....+ .++++||++|.|+++
T Consensus 118 aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi~e 189 (472)
T PRK03003 118 ADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGVGD 189 (472)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCcHH
Confidence 999999999998765433 334444433 457999999999985321 122223333333 357999999999999
Q ss_pred HHHHHHHHHHh
Q 048059 163 LFYEIAKRLAR 173 (198)
Q Consensus 163 ~~~~l~~~~~~ 173 (198)
+|++|+..+.+
T Consensus 190 L~~~i~~~l~~ 200 (472)
T PRK03003 190 LLDAVLAALPE 200 (472)
T ss_pred HHHHHHhhccc
Confidence 99999988755
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.90 E-value=1.8e-22 Score=160.50 Aligned_cols=153 Identities=21% Similarity=0.173 Sum_probs=112.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMY 79 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 79 (198)
..++|+++|++|+|||||+++|++.... ....+..+.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999986432 22233334444444455544 55789999998554332 2356
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
++++|++++|||++++.+++.. |+..+.. .+.|+++|+||+|+... ....+++.++.+++++||++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988877665 6555432 35799999999998543 12345666788899999998 69
Q ss_pred HHHHHHHHHHHHHhhC
Q 048059 160 INELFYEIAKRLARVS 175 (198)
Q Consensus 160 i~~~~~~l~~~~~~~~ 175 (198)
++++|+.|.+.+.+..
T Consensus 348 I~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 348 IKALVDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887754
No 160
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.7e-22 Score=140.58 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=99.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-----hhcccchhhhcCCCeE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-----RYHSLAPMYYRGAAAA 86 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~ 86 (198)
+|+++|.+|+|||||+++|.+... ....+.+ ..+... .+|||||.. .+..+. ..+.++|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALI-TTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceE-------EEECCC----CcccCCccccCCHHHHHHHH-HHHhcCCEE
Confidence 799999999999999999886431 1112211 122222 269999972 222222 236899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--eEEEEccCCCCCHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM--FYIETSAKTAQNINELF 164 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~ 164 (198)
++|+|+++..++. ..|+..+ ....|+++++||+|+.. ...+...+++...++ +++++||++|.|++++|
T Consensus 69 l~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 69 IYVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 9999999876652 2333332 23568999999999854 235666777777775 89999999999999999
Q ss_pred HHHHHHHHhhCC
Q 048059 165 YEIAKRLARVSP 176 (198)
Q Consensus 165 ~~l~~~~~~~~~ 176 (198)
+++.+.+.+...
T Consensus 140 ~~l~~~~~~~~~ 151 (158)
T PRK15467 140 DYLASLTKQEEA 151 (158)
T ss_pred HHHHHhchhhhc
Confidence 999887765544
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=1.9e-22 Score=161.18 Aligned_cols=149 Identities=23% Similarity=0.199 Sum_probs=109.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMY 79 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 79 (198)
..++|+++|.+|+|||||+++|++.... ....+....+.....+.+++ ..+.+|||||.+.+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999986532 22233333333344444443 56789999998654332 2236
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
+.++|++++|||++++.+++....|.. ..+.|+++|+||+|+....... ...+.+++++||++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999998887776554443 3457999999999986433221 33567899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 048059 160 INELFYEIAKRLAR 173 (198)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (198)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998765
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=1.3e-22 Score=145.66 Aligned_cols=159 Identities=19% Similarity=0.138 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC----CCCCC-----CCCCcceeEEEEEEE----------eCCcEEEEEEEeCCCchh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG----QFYDQ-----QEPTIGAAFFTQILS----------LSEATVKFDIWDTAGQER 71 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~----~~~~~-----~~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~ 71 (198)
+||+++|++++|||||+++|+.. .+... ...|.+..+....+. .......+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 11111 112333333333332 123367889999999876
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHH-H-----
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFS-Q----- 143 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~-~----- 143 (198)
+..........+|++++|+|+++.......+.+. +... ...|+++++||+|+...... ..++..+.. .
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444334456789999999998754433333222 1222 24589999999998532211 122222211 1
Q ss_pred -HcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 144 -ENGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 144 -~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
..+++++++||++|.|+++++++|.+++..
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 136789999999999999999999987754
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=4.2e-22 Score=157.62 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=109.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh--cccchh------hhcC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY--HSLAPM------YYRG 82 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~~~ 82 (198)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||+|..+. ...+.. .+.+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986654333333233333334444432 25679999997321 222332 3578
Q ss_pred CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHH
Q 048059 83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTAQNIN 161 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 161 (198)
+|++|+|+|++++.+++.+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999998888776665555554445689999999999853211 1111 1123444 5889999999999
Q ss_pred HHHHHHHHHHHhh
Q 048059 162 ELFYEIAKRLARV 174 (198)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (198)
+++++|...+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999988543
No 164
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.7e-21 Score=153.47 Aligned_cols=158 Identities=23% Similarity=0.229 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEE--EEeCCcEEEEEEEeCCCchh----hcccchhh---hc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQI--LSLSEATVKFDIWDTAGQER----YHSLAPMY---YR 81 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~ 81 (198)
..|+++|.||||||||+++|++........+. ++..+.. +.+. ....+.+||+||... ...+...+ +.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypf--TTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHF--TTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCc--ceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 38999999999999999999986533222222 1111221 2222 145688999999632 11222333 46
Q ss_pred CCCeEEEEEECCCh---hhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059 82 GAAAAVVVYDISNM---DTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT 156 (198)
Q Consensus 82 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (198)
.++++++|+|+++. +++++...|...+..... ...|++||+||+|+.. ..+....+.+.++.+++++||++
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~t 311 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALT 311 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCC
Confidence 79999999999864 567777778777776532 4689999999999842 13445666766778899999999
Q ss_pred CCCHHHHHHHHHHHHHhhC
Q 048059 157 AQNINELFYEIAKRLARVS 175 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~~ 175 (198)
+.|+++++++|.+.+.+..
T Consensus 312 geGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 312 GQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999998876654
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=4.3e-22 Score=160.54 Aligned_cols=162 Identities=21% Similarity=0.189 Sum_probs=110.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----------hhcccc-
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----------RYHSLA- 76 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~- 76 (198)
..++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++. .+.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 3589999999999999999999987642 233344444443444555544 45799999952 222222
Q ss_pred hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHH-HHHHHcCCeEEEEc
Q 048059 77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGE-QFSQENGMFYIETS 153 (198)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~-~~~~~~~~~~~~~S 153 (198)
..+++++|++++|||++++.+++.+. ++..+.. .+.|+++|+||+|+...... ..++.. .+.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23568999999999999887777664 3333333 45799999999998642211 111111 12222346899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCC
Q 048059 154 AKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
|++|.|++++|+.+.+.+.....
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999887654444
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=2.1e-22 Score=139.78 Aligned_cols=146 Identities=19% Similarity=0.131 Sum_probs=97.4
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhcCCC
Q 048059 14 VLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYRGAA 84 (198)
Q Consensus 14 ~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d 84 (198)
+++|.+|+|||||+++|++.... ....+....+....... .....+.+|||||...+.. .+...+.++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE--WGGREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE--ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999976422 11122222222222222 2346788999999876443 3345678899
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINEL 163 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 163 (198)
++++|+|..++.+.... .+...+.. ...|+++++||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999775544332 22222322 34799999999998653321 222334565 7899999999999999
Q ss_pred HHHHHHH
Q 048059 164 FYEIAKR 170 (198)
Q Consensus 164 ~~~l~~~ 170 (198)
+++|++.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 167
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=2.4e-22 Score=145.39 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCCcceeEEEEEEE-----------------------eC--C----
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQ-----QEPTIGAAFFTQILS-----------------------LS--E---- 56 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~-----~~~~~~~~~~~~~~~-----------------------~~--~---- 56 (198)
++|+++|+.|+|||||+.+|.+...+.. ...+....+....+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5899999999999999999976421110 111111111110000 00 0
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--C
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--P 134 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~ 134 (198)
....+.||||||++.+...+...+.++|++++|+|++++....+....+..+... ...|+++++||.|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1267899999999988887777888999999999998642111111122222222 23478999999998642211 1
Q ss_pred HHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 135 TEEGEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
.+..+++.... +++++++||++|.|+++++++|.+.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12333333332 5789999999999999999999876544
No 168
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.4e-23 Score=139.62 Aligned_cols=171 Identities=28% Similarity=0.514 Sum_probs=149.8
Q ss_pred CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhh
Q 048059 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYY 80 (198)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 80 (198)
|..|......++++++|..|.||||++++.+.+.+...+.++.|.........-+...+++..|||.|++.+..+...++
T Consensus 1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 67777777889999999999999999999999999999999999988777776666679999999999999999999999
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
-+....|++||++.+-++.++.+|...+.+.. .++|++++|||.|..... .......+-++.++.++++||+.+.|.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeeccccccc
Confidence 99999999999999999999999999998875 559999999999975422 223445566677899999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 048059 161 NELFYEIAKRLARV 174 (198)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (198)
..-|.|+.+++...
T Consensus 158 ekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 158 ERPFLWLARKLTGD 171 (216)
T ss_pred ccchHHHhhhhcCC
Confidence 99999999987654
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=1.4e-21 Score=140.71 Aligned_cols=160 Identities=19% Similarity=0.169 Sum_probs=106.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhcccc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSLA 76 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~ 76 (198)
....++|+++|++|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 345689999999999999999999987655555566665543333322 357889999994 3333344
Q ss_pred hhhhcC---CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCeEEE
Q 048059 77 PMYYRG---AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENGMFYIE 151 (198)
Q Consensus 77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 151 (198)
..++.. .+++++++|.+++.+.... .+...+.. ...|+++++||+|+....+. ..+.+.......+.++++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 445543 4678888998765433221 11222221 35689999999998543221 122233444334678999
Q ss_pred EccCCCCCHHHHHHHHHHHHHh
Q 048059 152 TSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
+||+++.|++++++.|...+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999877654
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=2e-21 Score=155.61 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=106.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc----------
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA---------- 76 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~---------- 76 (198)
...++|+++|.+|+|||||+++|++.... ....+....+.....+...+ ..+.+|||||..++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence 34589999999999999999999986532 11222222222222333333 368899999975443221
Q ss_pred -hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH-HHHHH----cCCeEE
Q 048059 77 -PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE-QFSQE----NGMFYI 150 (198)
Q Consensus 77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~ 150 (198)
..+++.+|++|+|+|++++.+..... ++..+.. ...|+++|+||+|+.+.. ...+... .+... .+++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence 23578999999999999876665543 3333332 357999999999986211 1111222 22222 247899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 151 ETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
++||++|.|++++|+++...+....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999988766543
No 171
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.7e-21 Score=154.19 Aligned_cols=163 Identities=20% Similarity=0.185 Sum_probs=108.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh----ccc---chhhhcC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY----HSL---APMYYRG 82 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~ 82 (198)
-..|+|+|.||||||||+++|++........+.. +..+..-.+......+++||+||.... ..+ .-..+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfT--Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFT--TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcc--cccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 4689999999999999999999865432222222 222222222223357899999995311 111 1224578
Q ss_pred CCeEEEEEECCCh----hhHHHHHHHHHHHHHhC-----------CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 048059 83 AAAAVVVYDISNM----DTFNRANKLVQELQRQG-----------NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM 147 (198)
Q Consensus 83 ~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (198)
++++|+|+|+++. ..++++..+...+.... ....|++||+||+|+...... .+.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 9999999999753 34555555554554332 135799999999998644332 2233333345578
Q ss_pred eEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 148 FYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 148 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
+++++||+++.|+++++.+|.+.+....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998876654
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=3.8e-21 Score=157.29 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=108.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
...+|+++|++++|||||+++|.+..+.....+.++.+.....+...+. ..+.||||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4579999999999999999999987765544443333333333333322 268899999999999999989999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc---------CCeEEEEccCCCCC
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN---------GMFYIETSAKTAQN 159 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 159 (198)
|+|+++...-+..+. +... ...+.|+++++||+|+... ..+......... ..+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e~-i~~~---~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-ISHA---KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHH-HHHH---HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999876432222221 1221 1245799999999998542 223333333222 24799999999999
Q ss_pred HHHHHHHHHH
Q 048059 160 INELFYEIAK 169 (198)
Q Consensus 160 i~~~~~~l~~ 169 (198)
+++++++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999875
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=3.9e-21 Score=134.34 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchhhhc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPMYYR 81 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~ 81 (198)
..+|+++|++|||||||++++++.......... .................+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999986543222111 1111111222333456788999999643222 2344578
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNI 160 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 160 (198)
.+|++++|+|++++.+ +....+...+.. .+.|+++++||+|+........+....+.... ..+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 8999999999987621 112223333332 24689999999998643333344445555544 368999999999999
Q ss_pred HHHHHHHHHH
Q 048059 161 NELFYEIAKR 170 (198)
Q Consensus 161 ~~~~~~l~~~ 170 (198)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=5.7e-21 Score=149.67 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-------ccchhhhcCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-------SLAPMYYRGA 83 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 83 (198)
..|.|+|.||||||||+++|++.+......|..+.....-.+... ....+.++||||...-. ...-..+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 379999999999999999999865432222322222112223332 23458899999974311 1111346789
Q ss_pred CeEEEEEECC---ChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccCC
Q 048059 84 AAAVVVYDIS---NMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSAKT 156 (198)
Q Consensus 84 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 156 (198)
+++++|+|++ +...++.+..|++.+..... ...|+++|+||+|+.....+ .+....+....+ .+++.+||++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 9999999987 45567777778777766432 35799999999998643332 344455555544 4789999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 048059 157 AQNINELFYEIAKRLARV 174 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (198)
+.|+++++++|.+.+.+.
T Consensus 318 g~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 318 GLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CcCHHHHHHHHHHHhhhC
Confidence 999999999999988664
No 175
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.87 E-value=5.4e-24 Score=145.27 Aligned_cols=176 Identities=32% Similarity=0.517 Sum_probs=148.9
Q ss_pred CCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcE-EEEEEEeCCCchhhcccchhhh
Q 048059 2 ARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT-VKFDIWDTAGQERYHSLAPMYY 80 (198)
Q Consensus 2 ~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~~~~~~~~~~ 80 (198)
+.|.....-+|++|+|.-|+|||+++.++....++..+..++|.++..+...-+... ++++|||..|++++..+..-|+
T Consensus 17 ~ap~kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyy 96 (229)
T KOG4423|consen 17 SAPKKREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYY 96 (229)
T ss_pred CCCchhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEe
Confidence 344455667999999999999999999999988888899999998887776555443 5788999999999999999999
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhC----CCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCC-eEEEEcc
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQG----NQIVVMALAANKSDLDSQRE-VPTEEGEQFSQENGM-FYIETSA 154 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa 154 (198)
+.+++..+|||+++..+|+....|.+.+.... +...|++++.||||...... .......++++++++ ..+++|+
T Consensus 97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~ 176 (229)
T KOG4423|consen 97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSA 176 (229)
T ss_pred cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecc
Confidence 99999999999999999999999999987632 24578899999999854322 224677888888987 6999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCC
Q 048059 155 KTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
|.+.+++++-+.+++++.....+
T Consensus 177 Kenkni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred ccccChhHHHHHHHHHHHhhccC
Confidence 99999999999999998877643
No 176
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=4.3e-21 Score=157.49 Aligned_cols=157 Identities=21% Similarity=0.189 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ---FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+.|+++|++++|||||+++|++.. +..+...+++.+.....+...+ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999633 2233334444444344444444 77899999999999888888899999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCeEEEEccCCC
Q 048059 88 VVYDISN---MDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV--PTEEGEQFSQEN----GMFYIETSAKTA 157 (198)
Q Consensus 88 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~ 157 (198)
+|+|+++ +++.+.+. .+.. .+.| ++|++||+|+...... ..+++..+.... +++++++||++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999987 34443332 2222 2345 9999999998653321 223445555544 578999999999
Q ss_pred CCHHHHHHHHHHHHHhhCC
Q 048059 158 QNINELFYEIAKRLARVSP 176 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~~ 176 (198)
.|+++++.+|...+.....
T Consensus 152 ~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 152 QGIGELKKELKNLLESLDI 170 (581)
T ss_pred CCchhHHHHHHHHHHhCCC
Confidence 9999999998877665443
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=2.2e-21 Score=137.81 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=98.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----------hhccc
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----------RYHSL 75 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~ 75 (198)
+....++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+..+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 446678999999999999999999998764444455555554443333332 58899999952 23333
Q ss_pred chhhhc---CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCHHHHHHHHHHcC--Ce
Q 048059 76 APMYYR---GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPTEEGEQFSQENG--MF 148 (198)
Q Consensus 76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~ 148 (198)
...+++ .++++++|+|.+++.+.... .++..+.. ...|+++++||+|+....+ ...+++++.....+ ++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 344554 36899999999875444333 22233322 3578999999999854321 12344444444443 58
Q ss_pred EEEEccCCCCCHH
Q 048059 149 YIETSAKTAQNIN 161 (198)
Q Consensus 149 ~~~~Sa~~~~~i~ 161 (198)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 178
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=5.2e-21 Score=145.85 Aligned_cols=161 Identities=18% Similarity=0.120 Sum_probs=105.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc--------ccchhhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH--------SLAPMYY 80 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~ 80 (198)
..-.|+|+|++|||||||+|+|++........ ...++.....-.......++.++||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~-~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCC-CCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 45679999999999999999999876532211 11111111111111233678999999964322 2233456
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CeEEEEccCCCCC
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG-MFYIETSAKTAQN 159 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 159 (198)
.++|++++|+|+++..+ +.....+..+. ..+.|+++|+||+|+........+....+....+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 88999999999987322 11222233332 2357999999999986433333444555555444 5799999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 048059 160 INELFYEIAKRLARV 174 (198)
Q Consensus 160 i~~~~~~l~~~~~~~ 174 (198)
+++++++|...+.+.
T Consensus 159 v~~L~~~L~~~l~~~ 173 (292)
T PRK00089 159 VDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999887543
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.9e-20 Score=131.82 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=100.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-----------cch
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-----------LAP 77 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~ 77 (198)
.++|+++|.+|+|||||+++|++..... ...+..........+...+ ..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4789999999999999999999865321 1222222222223333333 3477999999643211 112
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHH-HHHHHHc----CCeEEEE
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEG-EQFSQEN----GMFYIET 152 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~~~----~~~~~~~ 152 (198)
..+..+|++++|+|.+++.+..... ++..+.. ...|+++++||+|+........+.. ....+.+ ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3457899999999998876654432 2222222 3479999999999865432222222 2222333 3689999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 048059 153 SAKTAQNINELFYEIAKR 170 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~ 170 (198)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998763
No 180
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.6e-22 Score=133.37 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=122.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ-------FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY 79 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 79 (198)
....+.|+|+|+-++|||||+.++.... ......+|.|.+.....+ . ...+.+||.+|++..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHH
Confidence 3456899999999999999998876421 112233555554333332 2 4568899999999999999999
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH---H---HcCCeEEEE
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS---Q---ENGMFYIET 152 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~---~~~~~~~~~ 152 (198)
+..++++|+++|+++++.|+.....++.+... .-...|+++.+||.|+...-. .++++... . +..+++.++
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccc
Confidence 99999999999999999998877666655443 447799999999999864322 22222222 2 345789999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh
Q 048059 153 SAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
||.+|+||++...|++..+.+.
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999988877
No 181
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.6e-20 Score=135.68 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=86.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC-CeEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA-AAAVVVY 90 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 90 (198)
+|+++|++|||||||+++|..+.+...+.++ ..+..............+.+||+||+.+++..+..+++++ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765544332 2222222222223456789999999999998888999998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHH---hCCCCceEEEEEeCCCCCC
Q 048059 91 DISNM-DTFNRANKLVQELQR---QGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 91 d~~~~-~s~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~ 129 (198)
|+++. .++..+..|+..+.. ......|++|++||+|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99887 667666555444322 2235789999999999853
No 182
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=128.22 Aligned_cols=156 Identities=21% Similarity=0.268 Sum_probs=120.9
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+++|.-++|||||++.|.+.. .....||.|++..... +. ..+.+.+||.+|+...+..|..|+.+.|+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED-~~hltpT~GFn~k~v~--~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSED-PRHLTPTNGFNTKKVE--YD-GTFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCC-hhhccccCCcceEEEe--ec-CcEEEEEEecCCccccchhhhhhhhccce
Confidence 34668999999999999999999998654 4556688787644433 33 45789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH--------cCCeEEEEccCC
Q 048059 86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE--------NGMFYIETSAKT 156 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~ 156 (198)
+|||+|.+|..-|+++. .+.+.+....-..+|++|..||.|+..+..+ .+.+.+ ..+.+.+|||.+
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-----eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-----EEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-----HHHHHhcchhhhhhceEEeeeCcccc
Confidence 99999999988888774 4444444445577999999999998543322 222222 345688999999
Q ss_pred CCCHHHHHHHHHHH
Q 048059 157 AQNINELFYEIAKR 170 (198)
Q Consensus 157 ~~~i~~~~~~l~~~ 170 (198)
++|+..-.+|+...
T Consensus 164 ~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 164 LEGSTDGSDWVQSN 177 (185)
T ss_pred ccCccCcchhhhcC
Confidence 99999999987653
No 183
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=7.8e-21 Score=156.16 Aligned_cols=146 Identities=22% Similarity=0.210 Sum_probs=106.3
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc------chhhh--cCCCeEEE
Q 048059 17 GDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL------APMYY--RGAAAAVV 88 (198)
Q Consensus 17 G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~ 88 (198)
|++|+|||||+|+|++........++.+.+.....+..++ ..+.+|||||+..+... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998775444455444444444444443 45789999998776543 23333 37999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|+|.++.+.. ..+...+.+ .+.|+++++||+|+.+.+.+. .+.+.+++.++++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874322 222222222 457999999999986555443 456788888999999999999999999999998
Q ss_pred HHH
Q 048059 169 KRL 171 (198)
Q Consensus 169 ~~~ 171 (198)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=2e-20 Score=155.34 Aligned_cols=157 Identities=21% Similarity=0.207 Sum_probs=110.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc--eeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG--AAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
....+|+|+|++++|||||+++|....+.....+.++ ...+...+...+....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 3557999999999999999999998665543322222 22223333344456889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH-------HHHcC--CeEEEEccCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF-------SQENG--MFYIETSAKT 156 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~ 156 (198)
+|+|+|+++....+..+.| ..+. ..+.|++|++||+|+.... .+..... ...++ ++++++||++
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999874322222222 1221 2457999999999986422 2222211 12223 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 048059 157 AQNINELFYEIAKRL 171 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~ 171 (198)
|.|+++++++|....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999988753
No 185
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=3.1e-20 Score=152.71 Aligned_cols=159 Identities=21% Similarity=0.245 Sum_probs=114.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CC-----CCC------CCCcceeEEEEEEEe-----CCcEEEEEEEeCCCchh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ--FY-----DQQ------EPTIGAAFFTQILSL-----SEATVKFDIWDTAGQER 71 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~ 71 (198)
-.||+|+|+.++|||||+.+|+... .. ... ..+.|.++....+.+ ++..+.+.||||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 4699999999999999999998631 11 011 012233333322222 45578899999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF--- 148 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 148 (198)
+...+..+++.+|++|+|+|+++....+....|.... ..+.|+++++||+|+.... ..+...++...+++.
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASD 160 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcce
Confidence 9999999999999999999998876555555554332 1357899999999985432 122234444445554
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 149 YIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
++++||++|.|+++++++|.+.+...
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCccc
Confidence 89999999999999999999877543
No 186
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.2e-20 Score=151.07 Aligned_cols=152 Identities=20% Similarity=0.148 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc--------hhhcccchhhhcCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ--------ERYHSLAPMYYRGA 83 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~~ 83 (198)
+|+++|.+|||||||+++|++.... ......|.+..............+.+|||||. +.+......+++++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA-IVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc-eecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 5899999999999999999986632 12222333322222222223456899999996 34445566778999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINE 162 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 162 (198)
|++++|+|..++.+... ..+...++. .+.|+++|+||+|+...... ..+ ...+++ +++++||++|.|+++
T Consensus 80 d~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~~ 150 (429)
T TIGR03594 80 DVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIGD 150 (429)
T ss_pred CEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChHH
Confidence 99999999987543332 122223332 35689999999998643321 122 335666 799999999999999
Q ss_pred HHHHHHHHHHh
Q 048059 163 LFYEIAKRLAR 173 (198)
Q Consensus 163 ~~~~l~~~~~~ 173 (198)
+++++...+.+
T Consensus 151 ll~~i~~~l~~ 161 (429)
T TIGR03594 151 LLDAILELLPE 161 (429)
T ss_pred HHHHHHHhcCc
Confidence 99999887744
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.5e-20 Score=149.47 Aligned_cols=146 Identities=19% Similarity=0.164 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchhhhc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPMYYR 81 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 81 (198)
.+|+++|.+|||||||+++|++.... ....+..+.+.....+...+ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 57999999999999999999986632 11222222233333334443 6789999999875 2333456678
Q ss_pred CCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCC
Q 048059 82 GAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQ 158 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 158 (198)
++|++|+|+|.+++.+.. .+..|+.. .+.|+++++||+|+... .+...++ ..+++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998754332 22334332 25799999999996431 1222333 34566 48999999999
Q ss_pred CHHHHHHHHHH
Q 048059 159 NINELFYEIAK 169 (198)
Q Consensus 159 ~i~~~~~~l~~ 169 (198)
|++++++++..
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999999987
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=3.5e-20 Score=155.72 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc----------chhh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL----------APMY 79 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~ 79 (198)
.++|+++|++|||||||+|+|++..... ....|.+...+...+.....++.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 5789999999999999999999876533 333566666666556667778999999998665432 1123
Q ss_pred h--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059 80 Y--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA 157 (198)
Q Consensus 80 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (198)
+ ..+|++++|+|.++.+.. ..+...+.+ .+.|+++++||.|+.+.+.+ ....+++.+.++++++++||+++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 479999999999875432 233344433 35799999999998655554 35567888889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 048059 158 QNINELFYEIAKRL 171 (198)
Q Consensus 158 ~~i~~~~~~l~~~~ 171 (198)
+|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999987754
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.7e-20 Score=129.92 Aligned_cols=151 Identities=21% Similarity=0.150 Sum_probs=100.8
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-------cchhhhcCCCeE
Q 048059 15 LLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-------LAPMYYRGAAAA 86 (198)
Q Consensus 15 v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~ 86 (198)
++|++|||||||++++++..... ...+.............. ....+.+||+||...... .+..++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 58999999999999999765432 122211111112222222 145788999999765543 333477899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE---EGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
++|+|.++........ +..... ....|+++++||+|+......... .........+++++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999877665554 222222 256799999999998654332211 122333345678999999999999999
Q ss_pred HHHHHHH
Q 048059 164 FYEIAKR 170 (198)
Q Consensus 164 ~~~l~~~ 170 (198)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998864
No 190
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=3.7e-20 Score=155.00 Aligned_cols=154 Identities=20% Similarity=0.197 Sum_probs=106.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
.....|+|+|+.++|||||+++|....+.......+..+.....+... ...+.||||||++.|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 456889999999999999999998766554333322222222223333 367899999999999999998999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-------HHHHcC--CeEEEEccCCCC
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-------FSQENG--MFYIETSAKTAQ 158 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~ 158 (198)
+|||+++...-+..+.| ... ...+.|++|++||+|+.... .+.... ++..++ ++++++||++|.
T Consensus 366 LVVdAddGv~~qT~e~i-~~a---~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~ 438 (787)
T PRK05306 366 LVVAADDGVMPQTIEAI-NHA---KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE 438 (787)
T ss_pred EEEECCCCCCHhHHHHH-HHH---HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence 99999874221111212 111 12457999999999985422 111111 122233 689999999999
Q ss_pred CHHHHHHHHHHH
Q 048059 159 NINELFYEIAKR 170 (198)
Q Consensus 159 ~i~~~~~~l~~~ 170 (198)
|++++|++|...
T Consensus 439 GI~eLle~I~~~ 450 (787)
T PRK05306 439 GIDELLEAILLQ 450 (787)
T ss_pred CchHHHHhhhhh
Confidence 999999998763
No 191
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-21 Score=128.69 Aligned_cols=161 Identities=26% Similarity=0.333 Sum_probs=123.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
...+|+++|.-|+|||+++.++.-+.. ....|++|.+... +..+++++++||.+|+-..+..|.-|+.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 679999999999999999988876553 3455777765433 33478899999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 89 VYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 89 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
|+|.+|....... ..++..+.+..-++..+++++||.|....-. +.........+..-+.+|+.||.+|+|++.++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 9999998776555 3555666655556788999999999754221 11111122223344789999999999999999
Q ss_pred HHHHHHHHhh
Q 048059 165 YEIAKRLARV 174 (198)
Q Consensus 165 ~~l~~~~~~~ 174 (198)
+||.+.+.++
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999987654
No 192
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=4.6e-20 Score=135.88 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=108.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------cchh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------LAPM 78 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~ 78 (198)
..+.--|+++|.||+|||||+|++.+.+..-.......+.....-+ +..+..++.++||||...-.. ....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI-~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-VTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEE-EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 3456779999999999999999999987553222211121112222 223367889999999643322 2334
Q ss_pred hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTA 157 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 157 (198)
.+..+|+++||+|+++...- ..+..++.+.. .+.|+++++||.|..............+...... .++++||++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 46789999999999864322 22333344433 4569999999999866554223333333333333 7999999999
Q ss_pred CCHHHHHHHHHHHHHhhCC
Q 048059 158 QNINELFYEIAKRLARVSP 176 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~~ 176 (198)
.|++.+.+.+...+.+...
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred CCHHHHHHHHHHhCCCCCC
Confidence 9999999999887766543
No 193
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=3.8e-21 Score=137.64 Aligned_cols=160 Identities=22% Similarity=0.206 Sum_probs=105.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCcceeEEEEEEEe--CCcEEEEEEEeCCCch
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ----------------EPTIGAAFFTQILSL--SEATVKFDIWDTAGQE 70 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~ 70 (198)
..++|+++|+.++|||||+.+|+........ ....+.+.......+ ......+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3589999999999999999999864321100 000011111222222 2566789999999999
Q ss_pred hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHH-HHHHHc---
Q 048059 71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGE-QFSQEN--- 145 (198)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~-~~~~~~--- 145 (198)
.|.......+..+|++|+|+|+.+.-... ....+..+.. .+.|+++++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 98888888899999999999998654332 2333333333 3467999999999862110 0011111 332222
Q ss_pred ---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 146 ---GMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 146 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
.++++++||.+|.|++++++.|.+.+.
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999988653
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=7.2e-20 Score=154.04 Aligned_cols=157 Identities=24% Similarity=0.167 Sum_probs=106.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchhh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPMY 79 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~ 79 (198)
....+|+|+|.+|||||||+++|++.... ....+.|.+..............+.+|||||.+. +......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~-iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREA-VVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34578999999999999999999976532 2223445554444433333445788999999753 23344566
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
+..+|++|||+|.++.-...+ ..|...+.. .+.|+++|+||+|+.... ......+....+ ..+++||++|.|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~G 423 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRG 423 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCC
Confidence 789999999999976422111 234444433 467999999999975321 122222222233 357899999999
Q ss_pred HHHHHHHHHHHHHh
Q 048059 160 INELFYEIAKRLAR 173 (198)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (198)
+++++++|++.+.+
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999988754
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=3.5e-20 Score=147.95 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=104.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC---------------------------CCCCcceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ---------------------------QEPTIGAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 57 (198)
....++|+++|+.++|||||+.+|+. +..... .....|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45579999999999999999999985 211100 0011133344444555666
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNR--ANKLVQELQRQGNQIVVMALAANKSDLDSQRE--- 132 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--- 132 (198)
.+.+.|||+||++.|.......+.++|++++|+|+++.++... ...++. +.... ...|++|++||+|+.....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHHHH
Confidence 7789999999998887666667789999999999988753311 111121 22222 2357999999999863221
Q ss_pred -CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 048059 133 -VPTEEGEQFSQENG-----MFYIETSAKTAQNINELF 164 (198)
Q Consensus 133 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 164 (198)
...+++..+++..+ ++++++||++|.|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11345556666554 579999999999998744
No 196
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=4.8e-20 Score=147.84 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=104.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-----------ch
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-----------AP 77 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~ 77 (198)
..++|+++|.+|+|||||+++|++..... ..+..|.+.......+......+.+|||||....... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~-~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVI-VSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 46999999999999999999999754321 1122233333333333333456789999996432211 12
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCeEEEEc
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE----NGMFYIETS 153 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S 153 (198)
.+++.+|++|+|+|++++.+..... ++..+.. ...|+++++||+|+..... ..+....+... ..++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEEe
Confidence 3578899999999999876655443 3333332 3468999999999863221 11111222222 357899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q 048059 154 AKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~ 174 (198)
|++|.|++++++.+...+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999988765543
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.6e-19 Score=122.02 Aligned_cols=158 Identities=24% Similarity=0.346 Sum_probs=116.6
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCC-------CcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-----QEP-------TIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
.......||+|.|+.++||||+++++........ ... |...++... .+ .....+.|++||||+++
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~-~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--EL-DEDTGVHLFGTPGQERF 81 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EE-cCcceEEEecCCCcHHH
Confidence 3456789999999999999999999987653111 111 111111111 11 22356889999999999
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEE
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN--GMFYI 150 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 150 (198)
.-+|+.+++++.++|+++|.+.+..+ .....++.+..... .|++|.+||.|+...+. .+.++++.+.. +.+.+
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALP--PEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCC--HHHHHHHHHhccCCCcee
Confidence 99999999999999999999999888 44555555544322 89999999999976543 34454444433 88999
Q ss_pred EEccCCCCCHHHHHHHHHHH
Q 048059 151 ETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~ 170 (198)
+.+|.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999988765
No 198
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=4e-20 Score=147.64 Aligned_cols=156 Identities=20% Similarity=0.173 Sum_probs=102.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC--CC---------------------------CCCCcceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY--DQ---------------------------QEPTIGAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~ 57 (198)
..+.++|+++|++++|||||+++|+...-. .. .....|.+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 456799999999999999999999842111 00 0012344444555556666
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC----
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQRE---- 132 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---- 132 (198)
.+.+.||||||++.|.......+..+|++|+|+|+++...+ .+...++..+... ...|+++++||+|+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 78899999999988766555567899999999999863122 1112222222222 2347899999999864221
Q ss_pred CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 048059 133 VPTEEGEQFSQENG-----MFYIETSAKTAQNINELF 164 (198)
Q Consensus 133 ~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 164 (198)
...+++..+....+ ++++++||++|.|+++..
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234455555444 579999999999998754
No 199
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.83 E-value=1.6e-19 Score=126.42 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=99.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----------hcccchhhhc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----------YHSLAPMYYR 81 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~ 81 (198)
.|+++|++|+|||||++.++++.+.....++.+.+.....+..+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996665555556655555444444443 788999999532 3333344443
Q ss_pred ---CCCeEEEEEECCChhhH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHH--HcCCeEEEE
Q 048059 82 ---GAAAAVVVYDISNMDTF--NRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQ--ENGMFYIET 152 (198)
Q Consensus 82 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~ 152 (198)
+.+++++++|.+...+. ..+..|+.. .+.|+++++||+|+...... .........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 46788999998765322 223334332 24689999999998432211 1112222222 334689999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 048059 153 SAKTAQNINELFYEIAKR 170 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~ 170 (198)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998864
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=1.3e-18 Score=128.17 Aligned_cols=151 Identities=18% Similarity=0.152 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-------ccchhhhcCCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-------SLAPMYYRGAA 84 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 84 (198)
+|+++|++|+|||||+++|++........+....+.....+.+. ...+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 78999999999999999999865332222222222223333333 4578899999974322 12335678999
Q ss_pred eEEEEEECCChh-hHHHHHHHHHHH-----------------------------------------HHh-----------
Q 048059 85 AAVVVYDISNMD-TFNRANKLVQEL-----------------------------------------QRQ----------- 111 (198)
Q Consensus 85 ~~i~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~----------- 111 (198)
++++|+|+++++ ..+.+...++.+ .+.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333332222111 000
Q ss_pred -------------CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 112 -------------GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 112 -------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
...-.|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012368999999999743 3445555543 4589999999999999999998755
No 201
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=1e-19 Score=144.21 Aligned_cols=163 Identities=18% Similarity=0.142 Sum_probs=105.6
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC---C--CCCCcceeEEE----------------EEEEeCC------cEEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD---Q--QEPTIGAAFFT----------------QILSLSE------ATVK 60 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~---~--~~~~~~~~~~~----------------~~~~~~~------~~~~ 60 (198)
+..++|+++|..++|||||+++|++...+. + ..-|+...+.. .....+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 567999999999999999999997642211 1 01111111100 0000011 1457
Q ss_pred EEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHH
Q 048059 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEG 138 (198)
Q Consensus 61 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~ 138 (198)
+.+||+||++.|...+......+|++++|+|++++....+....+..+... ...|+++++||+|+...... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 899999999999888888888999999999998643112222222233222 23478999999998643211 12333
Q ss_pred HHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 139 EQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 139 ~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
.++.... +++++++||++|+|+++++++|...+.
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4444332 678999999999999999999987654
No 202
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=5.2e-19 Score=148.85 Aligned_cols=160 Identities=20% Similarity=0.167 Sum_probs=106.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----------hccc-c
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----------YHSL-A 76 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~-~ 76 (198)
..++|+++|.+|||||||+++|++.... ....+..+.+.....+.+++. .+.+|||||..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 3489999999999999999999987642 122233333333334445544 466999999532 1111 1
Q ss_pred hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEE
Q 048059 77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-FSQE----NGMFYIE 151 (198)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~ 151 (198)
...++.+|++++|+|+++..+.+.... +..+.. .+.|+++|+||+|+..... .+.... +... ..+++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 234688999999999998877766543 333332 3579999999999864221 111221 2222 1346799
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 152 TSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
+||++|.|++++++.+.+.+.....
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999887765443
No 203
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=3.4e-19 Score=145.75 Aligned_cols=154 Identities=23% Similarity=0.187 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEEEE------------eCCcEEEEEEEeCCCchhhcc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQ----EPTIGAAFFTQILS------------LSEATVKFDIWDTAGQERYHS 74 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~l~D~~g~~~~~~ 74 (198)
.-|+++|++++|||||+++|.+..+.... ..++|..+...... +......+.||||||++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 45899999999999999999987654321 12233332221110 001112388999999999999
Q ss_pred cchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC------------CHHH--
Q 048059 75 LAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV------------PTEE-- 137 (198)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~------------~~~~-- 137 (198)
++..+++.+|++++|||+++ +++++.+.. +.. .+.|+++++||+|+...... ..+.
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99999999999999999987 444444332 221 35799999999998532100 0000
Q ss_pred ----------HHHHHHH--------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 138 ----------GEQFSQE--------------NGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 138 ----------~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
...+... ..++++++||++|+|+++++.+|....
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0111110 136899999999999999999987543
No 204
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=140.26 Aligned_cols=152 Identities=19% Similarity=0.103 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc---------ccchhhhc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH---------SLAPMYYR 81 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~ 81 (198)
..|+|+|.||||||||+|+|++.+.. -...++|++.....-........+.++||+|.+... ......+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A-IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA-IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee-EeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 57999999999999999999987643 222344554444443444445568999999975322 24556678
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCH
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNI 160 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 160 (198)
.||++|||+|....-+-++ +...+.++ ..+.|+++|+||+|... .+......-.+|. .++.+||.+|.|+
T Consensus 83 eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 83 EADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 9999999999875433222 22222233 24579999999999642 2222222334555 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 048059 161 NELFYEIAKRLA 172 (198)
Q Consensus 161 ~~~~~~l~~~~~ 172 (198)
.++++.++..+.
T Consensus 154 ~dLld~v~~~l~ 165 (444)
T COG1160 154 GDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHhhcC
Confidence 999999999873
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.82 E-value=2.9e-19 Score=129.73 Aligned_cols=149 Identities=22% Similarity=0.188 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------------C---CCCcceeEEEEEEEeCCcEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQ--------------------------Q---EPTIGAAFFTQILSLSEATVKFD 62 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~~ 62 (198)
||+|+|++|+|||||+++|+...-... . ....|.+.......+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999975321100 0 00012233333334444556788
Q ss_pred EEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC----CHHHH
Q 048059 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV----PTEEG 138 (198)
Q Consensus 63 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~----~~~~~ 138 (198)
||||||++.+.......+..+|++|+|+|++++.. +........+... ...++++++||+|+...... ..++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999998876666667889999999999986532 2222222222221 22357888999998542211 12334
Q ss_pred HHHHHHcC---CeEEEEccCCCCCHHHH
Q 048059 139 EQFSQENG---MFYIETSAKTAQNINEL 163 (198)
Q Consensus 139 ~~~~~~~~---~~~~~~Sa~~~~~i~~~ 163 (198)
..+...++ .+++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 45555555 35899999999998754
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=1.2e-18 Score=142.91 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh--CCCCCC------------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK--GQFYDQ------------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL 75 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 75 (198)
-.||+|+|+.++|||||+++|+. +.+... ...+.+.++......+....+++.+|||||+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 36899999999999999999996 322221 1234566766777777778899999999999999999
Q ss_pred chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCC
Q 048059 76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGM 147 (198)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~ 147 (198)
+..+++.+|++|+|+|+++.... +...++..+.. .+.|.++++||+|+...+. ...+++..+.. ...+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999999875322 22333333332 3568899999999864331 11233333322 2357
Q ss_pred eEEEEccCCCC----------CHHHHHHHHHHHHHhh
Q 048059 148 FYIETSAKTAQ----------NINELFYEIAKRLARV 174 (198)
Q Consensus 148 ~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~ 174 (198)
+++.+||++|. ++..+++.|++.+...
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 89999999997 5788888877766533
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=5.4e-19 Score=145.08 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=115.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG--QFYDQQ------------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA 76 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 76 (198)
.||+|+|+.++|||||+++|+.. .+.... ....|.++......+.+..+++.||||||+..|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999862 221111 1123455555555666677899999999999999899
Q ss_pred hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCCe
Q 048059 77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGMF 148 (198)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 148 (198)
..+++.+|++++|+|+++. ...+...|+..+.. .+.|+++++||+|+...+. ...++...+.. ...++
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999999764 34445556655544 3468899999999864332 11233333332 23578
Q ss_pred EEEEccCCCC----------CHHHHHHHHHHHHHhh
Q 048059 149 YIETSAKTAQ----------NINELFYEIAKRLARV 174 (198)
Q Consensus 149 ~~~~Sa~~~~----------~i~~~~~~l~~~~~~~ 174 (198)
++.+||++|. |+..+|+.|+..+...
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999999995 7999999988876543
No 208
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.81 E-value=5.7e-19 Score=137.24 Aligned_cols=155 Identities=22% Similarity=0.178 Sum_probs=109.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMYY 80 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~ 80 (198)
..++++++|.||+|||||+|+|++.... --....|++.......+.-..+++.++||+|...-... ....+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~A-IVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRA-IVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCce-EecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 3689999999999999999999986533 22233355555555555556677889999997544332 23456
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
.+||.+++|+|.+.+.+-++.. .+. ....+.|+++|.||.|+......... ....+.+++.+|+++|+|+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGL 364 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCH
Confidence 8999999999998753222211 111 23466899999999999765442211 1223447899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 048059 161 NELFYEIAKRLARV 174 (198)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (198)
+.+.+.|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887776
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=5.7e-19 Score=139.92 Aligned_cols=165 Identities=17% Similarity=0.144 Sum_probs=102.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----CCCCcceeEEEEEE----------------EeC--C----cEE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-----QEPTIGAAFFTQIL----------------SLS--E----ATV 59 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-----~~~~~~~~~~~~~~----------------~~~--~----~~~ 59 (198)
..+.++|+++|+.++|||||+.+|.+...+.. ...|+...+....+ ... + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 34569999999999999999999965321111 11111111100000 000 0 135
Q ss_pred EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHH
Q 048059 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEE 137 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~ 137 (198)
.+.||||||++.|.........++|++++|+|++++....+....+..+... ...|+++++||+|+...... ..++
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHHH
Confidence 7899999999887765555566789999999998643111111112222221 22468899999998653321 1233
Q ss_pred HHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 138 GEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 138 ~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
...+.+.. +++++++||++|.|+++++++|...+..
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 44444332 5789999999999999999999887643
No 210
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=134.12 Aligned_cols=164 Identities=18% Similarity=0.141 Sum_probs=113.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-----------ch
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-----------AP 77 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~ 77 (198)
..++|+|+|.|++|||||+|+|+++... -..+..|++.......+..+..++.++||+|..+-... ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~-Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERV-IVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceE-EecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 4699999999999999999999986643 23344566666666666656667889999997433222 22
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEE
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----NGMFYIET 152 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 152 (198)
..+..+|++++|+|++.+-+-++.. ....+.+ ...+++|++||+|+.+.+....++.+..... ..++++.+
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 3457899999999998765443332 2222222 4458999999999876543433433332222 24589999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 153 SAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
||++|.+++++|+.+..........
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred EecCCCChHHHHHHHHHHHHHhccc
Confidence 9999999999999987755544443
No 211
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=2.7e-18 Score=120.19 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=114.1
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhccc
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSL 75 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~ 75 (198)
+......|+++|.+|||||||||+|++.+.-...+.|+|.+.....+.+++. +.++|.||. +.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 4445689999999999999999999997766777888999988888887775 669999995 345555
Q ss_pred chhhhc---CCCeEEEEEECCChhhHHHH--HHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH----cC
Q 048059 76 APMYYR---GAAAAVVVYDISNMDTFNRA--NKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE----NG 146 (198)
Q Consensus 76 ~~~~~~---~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~ 146 (198)
...|+. +-.++++++|+..+-.-.+. -.|+.. .+.|++|++||+|.....+.. ......+.. ..
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~------~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~ 169 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE------LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH------cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence 666663 46778889998765443222 233332 567999999999986544332 122222222 23
Q ss_pred Ce--EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 147 MF--YIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 147 ~~--~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
.. ++.+|+.++.|++++...|...+.+
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 33 7888999999999999998887654
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=2.4e-18 Score=141.91 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC---CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQF---YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
-|.++|+.++|||||+++|++... ..+....+..+.....+... ....+.+||+||++.|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 478999999999999999996432 22222222222212222222 23357899999999987777777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC---CeEEEEccCCCCCHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENG---MFYIETSAKTAQNINEL 163 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~ 163 (198)
|+|+++... .+....+..+... ...+++||+||+|+.+.... ..++..++....+ ++++++||++|.|++++
T Consensus 81 VVda~eg~~-~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L 157 (614)
T PRK10512 81 VVACDDGVM-AQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDAL 157 (614)
T ss_pred EEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence 999876321 2222222222222 22346799999998643221 1234445544444 68999999999999999
Q ss_pred HHHHHHHHH
Q 048059 164 FYEIAKRLA 172 (198)
Q Consensus 164 ~~~l~~~~~ 172 (198)
++.|.....
T Consensus 158 ~~~L~~~~~ 166 (614)
T PRK10512 158 REHLLQLPE 166 (614)
T ss_pred HHHHHHhhc
Confidence 999986543
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.80 E-value=3.1e-18 Score=122.74 Aligned_cols=147 Identities=17% Similarity=0.138 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC---------C-----CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFY---------D-----QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL 75 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 75 (198)
.++|+++|..++|||||+++|++.... . ......|.+.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 589999999999999999999863100 0 00012234444445555566678899999999888777
Q ss_pred chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc-----C
Q 048059 76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQEN-----G 146 (198)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~ 146 (198)
....+..+|++++|+|++..-. .+....+..+... +.| +++++||.|+....+. ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 7777889999999999876432 2223333333332 344 7788999998532211 122344444433 3
Q ss_pred CeEEEEccCCCCCH
Q 048059 147 MFYIETSAKTAQNI 160 (198)
Q Consensus 147 ~~~~~~Sa~~~~~i 160 (198)
++++++||++|.|+
T Consensus 158 v~iipiSa~~g~n~ 171 (195)
T cd01884 158 TPIVRGSALKALEG 171 (195)
T ss_pred CeEEEeeCccccCC
Confidence 68999999999885
No 214
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.79 E-value=6.5e-19 Score=139.26 Aligned_cols=167 Identities=24% Similarity=0.288 Sum_probs=123.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...++|+++|..|+||||||..|+...+...-.+-...- .....+....+...++|++..+.-+....+.++.||++.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 457999999999999999999999988765543322211 111234445566889999876665556677889999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-C-eEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRA-NKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEE-GEQFSQENG-M-FYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~i~ 161 (198)
+||+.+++++++.+ ..|+..+++..+ .+.|+|+||||+|.........+. ...+...+. + ..++|||++-.++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~ 164 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS 164 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence 99999999999999 479998888643 679999999999986544432222 333333322 2 47899999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 048059 162 ELFYEIAKRLARVSP 176 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~ 176 (198)
++|....+++.....
T Consensus 165 e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 165 ELFYYAQKAVIHPTS 179 (625)
T ss_pred hhhhhhhheeeccCc
Confidence 999998776654433
No 215
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=2.5e-18 Score=115.27 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----hhhcccchhhhcCCCeEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----ERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----~~~~~~~~~~~~~~d~~i 87 (198)
||+++|+.|||||||+++|.+... .+..|....+ . =.++||||. ..+....-....+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999987553 2333322221 1 136899995 223333333446899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFYE 166 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (198)
++.|++++.+.-. ..+... -..|++=|+||+|+... ....+.++++.+.-|+ .+|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998754211 011111 23589999999998732 3345777788888888 6899999999999999998
Q ss_pred HH
Q 048059 167 IA 168 (198)
Q Consensus 167 l~ 168 (198)
|-
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=9.3e-18 Score=137.78 Aligned_cols=155 Identities=25% Similarity=0.243 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCcceeEEEEEEE--eCCcE-----E-----EEEEEeCCCchhhc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQE----PTIGAAFFTQILS--LSEAT-----V-----KFDIWDTAGQERYH 73 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~g~~~~~ 73 (198)
...|+++|++++|||||+++|.+........ +++|.++...... ..+.. . .+.||||||++.|.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 4579999999999999999998654322211 1233222211110 00111 1 26899999999999
Q ss_pred ccchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--C--------------
Q 048059 74 SLAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--P-------------- 134 (198)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~-------------- 134 (198)
.++...+..+|++++|+|+++ +++++.+.. +.. .+.|+++++||+|+...... .
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 988888899999999999987 555554432 221 35789999999998421110 0
Q ss_pred HH-------HHHHHHHH---------------cCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 135 TE-------EGEQFSQE---------------NGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 135 ~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
.+ +...+... ..++++++||++|.|+++++..+...+
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 00011111 135799999999999999998886533
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.78 E-value=9.8e-19 Score=127.94 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=93.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--C---------------------------CCCCCCcceeEEEEEEEeCCcEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQF--Y---------------------------DQQEPTIGAAFFTQILSLSEATVKFD 62 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (198)
+|+++|++++|||||+.+|+...- . .......|.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999864210 0 00001123333344445555667899
Q ss_pred EEeCCCchhhcccchhhhcCCCeEEEEEECCChhh------HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC--CCC-
Q 048059 63 IWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT------FNRANKLVQELQRQGNQIVVMALAANKSDLDSQ--REV- 133 (198)
Q Consensus 63 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~- 133 (198)
+|||||+..+...+...+..+|++|+|+|+++... ..+....+...... ...|+++++||.|+... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999998777766677788999999999987421 11122222222221 23589999999998632 111
Q ss_pred ---CHHHHHHHHHHc-----CCeEEEEccCCCCCHH
Q 048059 134 ---PTEEGEQFSQEN-----GMFYIETSAKTAQNIN 161 (198)
Q Consensus 134 ---~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~ 161 (198)
..+++..+.... +++++++||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 112222233333 3679999999999987
No 218
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=4.9e-18 Score=125.33 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=82.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--------C-----CC---CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFY--------D-----QQ---EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL 75 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~--------~-----~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 75 (198)
+|+++|++|+|||||+++|+...-. . .+ ....+.+.......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999863111 0 00 011223333444555666788999999999999888
Q ss_pred chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
+..+++.+|++++|+|.++.... ....++..+.. .+.|+++++||.|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 88999999999999999876432 33445555443 357899999999984
No 219
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=6.8e-18 Score=133.46 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=97.2
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCC------CC--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF------YD--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
+..+.++|+++|+.++|||||+++|++... .. ......|.+.....+.+......+.||||||+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 456689999999999999999999984210 00 0001123444455555666667889999999998
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC-
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQFSQENG- 146 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~- 146 (198)
|.........++|++++|+|+++....+ ....+..+... ..| +++++||+|+....+.. .+++..+....+
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 8765555667889999999998642222 22222333322 345 55789999986432211 234555665554
Q ss_pred ----CeEEEEccCCCC
Q 048059 147 ----MFYIETSAKTAQ 158 (198)
Q Consensus 147 ----~~~~~~Sa~~~~ 158 (198)
++++++||.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 789999999874
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=1e-17 Score=132.33 Aligned_cols=162 Identities=18% Similarity=0.137 Sum_probs=105.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYD--------------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
....++|+++|+.++|||||+++|++..... ......|.+.......+......+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 4567999999999999999999998631100 00012244444455556556667899999999888
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC--
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQFSQENG-- 146 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~-- 146 (198)
.......+..+|++++|+|+++...-. ...++..+... +.| +++++||+|+....+.. .++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 766666678899999999987642222 22233333332 345 67889999986332221 224444444444
Q ss_pred ---CeEEEEccCCCC--------CHHHHHHHHHHHHH
Q 048059 147 ---MFYIETSAKTAQ--------NINELFYEIAKRLA 172 (198)
Q Consensus 147 ---~~~~~~Sa~~~~--------~i~~~~~~l~~~~~ 172 (198)
++++++||++|. ++.++++.|...+.
T Consensus 165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 589999999983 46677766665543
No 221
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=4.1e-17 Score=124.95 Aligned_cols=162 Identities=21% Similarity=0.181 Sum_probs=113.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh--cccchh------hh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY--HSLAPM------YY 80 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~ 80 (198)
.-..|.++|.+|+|||||+|+|++........-....+-....+.+.+ ...+.+.||.|.-+. ..+..+ ..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 347899999999999999999997654433222222222244444554 446789999995211 111222 23
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
..+|+++.|+|++++...+.++.....+........|+++|.||.|+..... .......... ..+.+||++|.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCH
Confidence 5799999999999998888888888888887667799999999999754332 1111111122 5899999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 048059 161 NELFYEIAKRLARVSP 176 (198)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (198)
+.+++.|...+.....
T Consensus 345 ~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 345 DLLRERIIELLSGLRT 360 (411)
T ss_pred HHHHHHHHHHhhhccc
Confidence 9999999988876544
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=7.9e-18 Score=122.73 Aligned_cols=113 Identities=24% Similarity=0.255 Sum_probs=78.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------CCCcceeEEEEEEEe-----CCcEEEEEEEeCCCc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQ-----------------EPTIGAAFFTQILSL-----SEATVKFDIWDTAGQ 69 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~ 69 (198)
+|+|+|+.|+|||||+++|+........ ....+.++......+ .+..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 7899999999999999999874432110 011122222222211 355688999999999
Q ss_pred hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
..+......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9988888888999999999999987665433 333333322 347999999999974
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.5e-17 Score=129.40 Aligned_cols=162 Identities=18% Similarity=0.144 Sum_probs=104.1
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCC-----C----C-----CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF-----Y----D-----QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~-----~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
...+.++|+++|++++|||||+++|++... . . ......|.+.......+......+.|+||||++.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 345679999999999999999999986210 0 0 0011223444444445555566789999999988
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM-ALAANKSDLDSQREV---PTEEGEQFSQENG- 146 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 146 (198)
|.......+..+|++++|+|+.+... .+...++..+.. ...|. ++++||+|+....+. ..+++..+...++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 77666667788999999999976432 222233333332 23564 467999998642221 1224445555443
Q ss_pred ----CeEEEEccCCCC----------CHHHHHHHHHHHH
Q 048059 147 ----MFYIETSAKTAQ----------NINELFYEIAKRL 171 (198)
Q Consensus 147 ----~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 171 (198)
++++++||.+|. ++.++++.|...+
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 5666666666543
No 224
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.76 E-value=3.9e-17 Score=132.17 Aligned_cols=158 Identities=20% Similarity=0.176 Sum_probs=113.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhh--c
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYY--R 81 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~ 81 (198)
..+|+++|+||+|||||.|+|++........|....+ .++-.+..+..+++++|.||.-.... ....|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVE--kkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVE--KKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEE--EEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4679999999999999999999988877777765555 44444444444578999999632222 222333 4
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (198)
+.|+++-|+|+++.+.--.+. -++.+ -+.|++++.|+.|..+.+.+ .-+.+++.+.+|+|++++||++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLylt---lQLlE---~g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLT---LQLLE---LGIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHH---HHHHH---cCCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 579999999998765322221 12222 34689999999998655444 344677888899999999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 048059 162 ELFYEIAKRLARVSP 176 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~ 176 (198)
++.+.+.+.......
T Consensus 154 ~l~~~i~~~~~~~~~ 168 (653)
T COG0370 154 ELKRAIIELAESKTT 168 (653)
T ss_pred HHHHHHHHhcccccc
Confidence 999998876555443
No 225
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=6.4e-17 Score=116.54 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=95.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcce---eEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh-----hc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGA---AFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY-----YR 81 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~~ 81 (198)
.+||+++|.+|+|||||+|+|++.........+.+. +.....+... ....+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999986543322222221 1111111111 12368899999975332222222 56
Q ss_pred CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-----------CCHHHHHHHHH----Hc
Q 048059 82 GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQRE-----------VPTEEGEQFSQ----EN 145 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~ 145 (198)
++|+++++.+. .+... ..|+..+... ..|+++|+||+|+..... ...++..+.+. ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78998888542 23333 3455555443 468999999999832111 11112222222 11
Q ss_pred C---CeEEEEccC--CCCCHHHHHHHHHHHHHhhC
Q 048059 146 G---MFYIETSAK--TAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 146 ~---~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~ 175 (198)
+ -++|.+|+. .+.|+..+.+.|+..+.+..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 2 268899998 57899999999999887654
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.74 E-value=1.1e-16 Score=117.11 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------------CcceeEEEEE-------------EEeC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEP-----------------------TIGAAFFTQI-------------LSLS 55 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~ 55 (198)
||+++|+.++|||||+++|..+.+...... ..|.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999997654321110 0111110000 0111
Q ss_pred CcEEEEEEEeCCCchhhcccchhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC
Q 048059 56 EATVKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV 133 (198)
Q Consensus 56 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 133 (198)
.....+.++|+||+++|.......+. .+|++++|+|++.+.. .....++..+.. .+.|+++++||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 22456889999999888654444443 6899999999876433 222333333333 34689999999998532211
Q ss_pred --CHHHHHHHHH--------------------------HcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 134 --PTEEGEQFSQ--------------------------ENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 134 --~~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
..++..++.+ ...+++|.+|+.+|+|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1112222221 1124899999999999999988764
No 227
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=1.2e-16 Score=126.92 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=98.9
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFY--------------DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
.....++|+++|++++|||||+++|++..-. .......|.+.......+......+.|+||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3466799999999999999999999974110 00011134444444445555566788999999988
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC-
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQENG- 146 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~- 146 (198)
|.......+..+|++++|+|+..... .+....+..+.. .+.| +++++||.|+....+. ..+++..+.+..+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 87766777889999999999876432 222333333332 2346 7788999998642221 1123444444433
Q ss_pred ----CeEEEEccCCCCCH
Q 048059 147 ----MFYIETSAKTAQNI 160 (198)
Q Consensus 147 ----~~~~~~Sa~~~~~i 160 (198)
++++++||.+|.++
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 68999999998743
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.73 E-value=5e-17 Score=118.52 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcc-----cchhhhcCCCe
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHS-----LAPMYYRGAAA 85 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~ 85 (198)
||+++|+.+|||||+.+.+..+..+.+. ...+.+.......+ ....+.+.+||+||+..+.. ..+..++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999999888876544332 12222222222223 23456789999999965543 45677899999
Q ss_pred EEEEEECCChhhHHHHH---HHHHHHHHhCCCCceEEEEEeCCCCCCCC--CC----CHHHHHHHHHHcC---CeEEEEc
Q 048059 86 AVVVYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLDSQR--EV----PTEEGEQFSQENG---MFYIETS 153 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~----~~~~~~~~~~~~~---~~~~~~S 153 (198)
+|||+|+.+.+-.+++. ..+..+.+. +++..+-+++.|.|+..+. .. ..+.+.+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 99999998444444444 444444444 4778899999999985321 11 1233333344445 7899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059 154 AKTAQNINELFYEIAKRLARVSPPK 178 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~~~ 178 (198)
..+ +.+-++|..+++.+.+..+.-
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHCCC
T ss_pred CcC-cHHHHHHHHHHHHHcccHHHH
Confidence 998 579999999999988766543
No 229
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=2.8e-16 Score=117.83 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC--CCC---------------CCC---CcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQF--YDQ---------------QEP---TIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~--~~~---------------~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
.+|+|+|++|+|||||+++|+...- ... +.+ ..+.++......+....+++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5899999999999999999985211 100 000 01233444555666778899999999999
Q ss_pred hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
+|.......++.+|++|+|+|+++... .....++..... .+.|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 888777778899999999999986533 222334433322 4578999999999754
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=1.1e-16 Score=116.65 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCC------------CCCcceeEE--EEEEEeC--------CcEEEEEEEeCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFY--DQQ------------EPTIGAAFF--TQILSLS--------EATVKFDIWDTA 67 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~--~~~------------~~~~~~~~~--~~~~~~~--------~~~~~~~l~D~~ 67 (198)
+|+++|+.++|||||+.+|+...-. ... ...-|.+.. ...+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999853211 000 000011111 1112222 347889999999
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
|+..|......+++.+|++++|+|+++....+... .+..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCcc
Confidence 99999999999999999999999998765444322 2222222 346899999999975
No 231
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.72 E-value=3.5e-16 Score=115.41 Aligned_cols=170 Identities=18% Similarity=0.134 Sum_probs=110.1
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh------------
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER------------ 71 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------------ 71 (198)
+.+..+.++|+|+|.||+|||||.|.+.+.+.......+..++. ...-.+..+..++.|+||||--.
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~-~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH-RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee-eeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 34567789999999999999999999999887665544433332 33334556678899999999421
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC-------------CCC--HH
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR-------------EVP--TE 136 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-------------~~~--~~ 136 (198)
...........||.+++++|+++....-. ...+..+..+ .+.|-+++.||.|...++ ++. ..
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 01122344578999999999986432211 1223333333 457889999999974322 111 01
Q ss_pred HH-HHHHHH---------cCC----eEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 137 EG-EQFSQE---------NGM----FYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 137 ~~-~~~~~~---------~~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
+. .++... .++ .+|.+||++|+|++++-++|+..+....-.
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 11 111111 123 289999999999999999999877655443
No 232
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.72 E-value=2.1e-16 Score=117.05 Aligned_cols=156 Identities=16% Similarity=0.126 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----cch---hhhcCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----LAP---MYYRGA 83 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~---~~~~~~ 83 (198)
..|.++|.||+|||||+++|+..+......+.++..-..-.+++++ ...+.+=|.||.-+-.. +-. ..++.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 4678999999999999999998665433322211111111223333 22388999998532222 222 335789
Q ss_pred CeEEEEEECCCh---hhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe-EEEEccCCC
Q 048059 84 AAAVVVYDISNM---DTFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF-YIETSAKTA 157 (198)
Q Consensus 84 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 157 (198)
+.++||+|++.+ ..+++++.+...+..+. -...|.+||+||+|+++.. .....++++.+.-+ ++++||+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999988 88888887777776542 2567999999999985221 23346666666544 899999999
Q ss_pred CCHHHHHHHHHHH
Q 048059 158 QNINELFYEIAKR 170 (198)
Q Consensus 158 ~~i~~~~~~l~~~ 170 (198)
+|+.++++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999987653
No 233
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=3.3e-16 Score=116.80 Aligned_cols=161 Identities=17% Similarity=0.167 Sum_probs=110.6
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-----hhcc----cchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-----RYHS----LAPM 78 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~----~~~~ 78 (198)
.....|+|.|.||||||||++.+++........|...-....- ++..+...++++||||.- +.+. ...+
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--eeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 3457899999999999999999999876655555433222222 344456688999999951 1111 1111
Q ss_pred hhcCCCeEEEEEECC--ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccC
Q 048059 79 YYRGAAAAVVVYDIS--NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAK 155 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 155 (198)
.-.-.++++|+||.+ ...+++....++..+..... .|+++|.||.|....... +++......- +.....+++.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence 223478899999986 45677888889999988754 799999999998654433 3333333333 3347788999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 048059 156 TAQNINELFYEIAKRLARV 174 (198)
Q Consensus 156 ~~~~i~~~~~~l~~~~~~~ 174 (198)
.+.+++.+...+.....+.
T Consensus 320 ~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 320 KGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ehhhHHHHHHHHHHHhhch
Confidence 9999998888877765544
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=3.2e-16 Score=125.25 Aligned_cols=153 Identities=15% Similarity=0.188 Sum_probs=103.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCC--CC------------------------C---CCCCcceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQF--YD------------------------Q---QEPTIGAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~--~~------------------------~---~~~~~~~~~~~~~~~~~~~ 57 (198)
..+.++|+++|+.++|||||+.+|+...- .. . ....-|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 45679999999999999999999874210 00 0 0011133444445556667
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHH-------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN-------RANKLVQELQRQGNQIVVMALAANKSDLDSQ 130 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (198)
...+.++|+||+++|.......+..+|++|+|+|+++. .++ +....+..+... .-.++++++||.|+...
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL--GVKQMICCCNKMDATTP 160 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence 78899999999999998888889999999999999863 232 333333222221 22357889999997521
Q ss_pred C------CCCHHHHHHHHHHcC-----CeEEEEccCCCCCHHH
Q 048059 131 R------EVPTEEGEQFSQENG-----MFYIETSAKTAQNINE 162 (198)
Q Consensus 131 ~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~ 162 (198)
. ....+++..+.+..+ ++++++||.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 112345666666655 6799999999999853
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=3.4e-16 Score=117.94 Aligned_cols=143 Identities=11% Similarity=0.105 Sum_probs=91.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ----------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---- 74 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---- 74 (198)
..++|+|+|.+|+|||||+++|++..+... ..++.+.......+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998765433 233334444444555566778999999999432111
Q ss_pred ----------------------cchhhhc--CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 75 ----------------------LAPMYYR--GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 75 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
.....+. .+|+++|+++.+.. .+... ...+..+. ...|+++|+||+|+..
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCC
Confidence 1112222 46778888876541 12111 22233332 2578999999999854
Q ss_pred C--CCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059 130 Q--REVPTEEGEQFSQENGMFYIETSAKT 156 (198)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (198)
. .....+...+.+..+++++|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 2 22335556777778899988876644
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=2.8e-16 Score=126.50 Aligned_cols=154 Identities=19% Similarity=0.131 Sum_probs=96.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCC------------------CcceeEEEEEEEeC
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-------------QEP------------------TIGAAFFTQILSLS 55 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~ 55 (198)
....++|+++|++++|||||+.+|+...-.-. ... .-|.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 45679999999999999999999985321000 000 01222333334445
Q ss_pred CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH
Q 048059 56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT 135 (198)
Q Consensus 56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 135 (198)
....++.|+||||++.|.......+..+|++++|+|++....-...+.+ ..+... ...|+++++||+|+........
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l--g~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL--GIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh--CCCceEEEEEeeccccchhHHH
Confidence 5566889999999988865555557899999999998754321111111 112222 1247889999999864322111
Q ss_pred HHH----HHHHHHc----CCeEEEEccCCCCCHHHH
Q 048059 136 EEG----EQFSQEN----GMFYIETSAKTAQNINEL 163 (198)
Q Consensus 136 ~~~----~~~~~~~----~~~~~~~Sa~~~~~i~~~ 163 (198)
++. ..+.+.. .++++++||++|.|+.+.
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 222 2223333 368999999999998764
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=4.2e-16 Score=123.20 Aligned_cols=160 Identities=17% Similarity=0.122 Sum_probs=102.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC---C-----------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY---D-----------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
....++|+++|+.++|||||+++|++.... . ......|.+.......+......+.++||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 466799999999999999999999873110 0 00012244444445555556677889999999887
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEE-EEEeCCCCCCCCCC---CHHHHHHHHHHc---
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMA-LAANKSDLDSQREV---PTEEGEQFSQEN--- 145 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~---~~~~~~~~~~~~--- 145 (198)
.......+..+|++++|+|+..... .+...++..+.. ...|.+ +++||.|+...... ...++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 7666677789999999999976432 222333333333 235764 68999998642211 112333333332
Q ss_pred --CCeEEEEccCCCC----------CHHHHHHHHHHH
Q 048059 146 --GMFYIETSAKTAQ----------NINELFYEIAKR 170 (198)
Q Consensus 146 --~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 170 (198)
+++++++||+++. ++.++++.|...
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 3689999999875 345555555543
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=6.2e-16 Score=122.67 Aligned_cols=149 Identities=21% Similarity=0.181 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CC------------------CCcceeEEEEEEEeCCcEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQ-------------QE------------------PTIGAAFFTQILSLSEATV 59 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~-------------~~------------------~~~~~~~~~~~~~~~~~~~ 59 (198)
++|+++|+.++|||||+.+|+...-... .. ..-|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999974211000 00 0112223333444445566
Q ss_pred EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC----H
Q 048059 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP----T 135 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~ 135 (198)
++.|+||||++.|.......+..+|++++|+|+.....-+. ...+..+... ...++++++||+|+....... .
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHHH
Confidence 88999999999887666667889999999999875432221 1122222222 234688999999986422211 1
Q ss_pred HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 048059 136 EEGEQFSQENG---MFYIETSAKTAQNINE 162 (198)
Q Consensus 136 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 162 (198)
++...+.+..+ ++++++||++|+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22223333333 4799999999999885
No 239
>PLN03127 Elongation factor Tu; Provisional
Probab=99.69 E-value=6.9e-16 Score=123.25 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=100.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhC------CCCC--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKG------QFYD--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
.....++|+++|+.++|||||+++|++. .... ......|.+.......+.....++.|+||||+..
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3456799999999999999999999732 1000 0011124444455555666667889999999987
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc--
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQFSQEN-- 145 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 145 (198)
|..........+|++++|+|+++... .+....+..+.. .+.| +++++||+|+.+..+.. .++..++....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 76655556678999999999876432 222333333333 2356 57889999986422211 11222333222
Q ss_pred ---CCeEEEEccC---CCCC-------HHHHHHHHHHHH
Q 048059 146 ---GMFYIETSAK---TAQN-------INELFYEIAKRL 171 (198)
Q Consensus 146 ---~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~ 171 (198)
.++++++|+. +|.| +.++++.|...+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 3678888875 4554 566666666544
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.1e-15 Score=124.09 Aligned_cols=117 Identities=17% Similarity=0.245 Sum_probs=82.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCC----------C-C-------CCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYD----------Q-Q-------EPTIGAAFFTQILSLSEATVKFDIWDTA 67 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~----------~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 67 (198)
....+|+|+|++++|||||+++|+. +.... . . ....|.++......+....+.+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3457999999999999999999974 11000 0 0 0111333444445566667889999999
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
|+..|......++..+|++|+|+|+++... .....++..... .+.|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 999888877778899999999999986532 223344433322 467999999999974
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.2e-16 Score=120.35 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CC----------cceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQE------PT----------IGAAFFTQILSLSEATVKFDIWDTAGQERYHSL 75 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 75 (198)
+|+++|++|+|||||+++|+......... .+ .+.........+....+.+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999997532110000 00 011112222333445577899999999888778
Q ss_pred chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE--EEc
Q 048059 76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYI--ETS 153 (198)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~S 153 (198)
+...+..+|++++|+|.++.........| ..+.. .+.|+++++||.|+.... ..+....+...++.+++ .++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip 154 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence 88899999999999999876544333323 22322 357899999999986432 22334444445555443 344
Q ss_pred cCCCCCHHHHHHHH
Q 048059 154 AKTAQNINELFYEI 167 (198)
Q Consensus 154 a~~~~~i~~~~~~l 167 (198)
..++.++..+.+.+
T Consensus 155 ~~~~~~~~~~vd~~ 168 (268)
T cd04170 155 IGEGDDFKGVVDLL 168 (268)
T ss_pred ccCCCceeEEEEcc
Confidence 55555554444443
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.68 E-value=7.5e-16 Score=123.73 Aligned_cols=149 Identities=17% Similarity=0.119 Sum_probs=97.3
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCC------CCC--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ------FYD--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
....++|+++|++++|||||+++|++.. ... ......|.+.......+......+.|+|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4567999999999999999999999521 000 01112233333334444445567899999999988
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc---
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQEN--- 145 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~--- 145 (198)
.......+..+|++++|+|+.+... .+...++..+... ..| +++++||.|+....+. ..+++..+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 7777777789999999999886533 2223333333332 345 7788999998542211 112344444443
Q ss_pred --CCeEEEEccCCCCC
Q 048059 146 --GMFYIETSAKTAQN 159 (198)
Q Consensus 146 --~~~~~~~Sa~~~~~ 159 (198)
+++++++|+.++.+
T Consensus 234 ~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 234 GDDIPIISGSALLALE 249 (478)
T ss_pred cCcceEEEEEcccccc
Confidence 46799999998854
No 243
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=2.9e-15 Score=107.91 Aligned_cols=164 Identities=16% Similarity=0.174 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc--------c---chhh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS--------L---APMY 79 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~---~~~~ 79 (198)
++|+++|.+|||||||+|.|++...........+.+..............+.++||||...... + ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998764322211112222111211122345788999999643211 1 1122
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCCeEEE
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ--IVVMALAANKSDLDSQREV------PTEEGEQFSQENGMFYIE 151 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~ 151 (198)
..+.|++|+|+++.+ .+- .....++.+....+. -.+++++.|+.|....... .....+.+.+..+-.++.
T Consensus 81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 357899999999876 221 222333444333221 2478899999996433211 113445555555656655
Q ss_pred Ecc-----CCCCCHHHHHHHHHHHHHhhCC
Q 048059 152 TSA-----KTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 152 ~Sa-----~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
.+. ..+.++.++++.+.+.+.+..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 554 4567899999998887776443
No 244
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.67 E-value=7.2e-16 Score=123.06 Aligned_cols=166 Identities=14% Similarity=0.132 Sum_probs=104.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC---C--CCCCcceeEEEEE-------------EEeCC-----------
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYD---Q--QEPTIGAAFFTQI-------------LSLSE----------- 56 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~---~--~~~~~~~~~~~~~-------------~~~~~----------- 56 (198)
..+..++|.++|+...|||||+.+|++..... + ..-|+...+.... .....
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 34668999999999999999999999743211 1 1111111111100 00000
Q ss_pred -----cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 57 -----ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 57 -----~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
-...+.|+|+||++.|..........+|++++|+|++.+....+....+..+... ...++++++||+|+....
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc--CCCcEEEEEecccccCHH
Confidence 0236889999999988777677778999999999998642112222222222222 234788999999986422
Q ss_pred CC--CHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 132 EV--PTEEGEQFSQE---NGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 132 ~~--~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
.. ..++..++... .+++++++||++|.|++.+++.|...+..
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 11 12233333322 36789999999999999999998875543
No 245
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.67 E-value=6.5e-16 Score=116.00 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--CC-----------C---CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQF--YD-----------Q---QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL 75 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~--~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 75 (198)
+|+++|++|+|||||+++|+...- .. . .....+.+.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211 00 0 0011233444444455556778999999999888888
Q ss_pred chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
+...++.+|++|+|+|+.+...-. ....+..+.. .+.|+++++||.|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 889999999999999997653222 2233333332 3468999999999864
No 246
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=1.4e-15 Score=126.91 Aligned_cols=153 Identities=19% Similarity=0.158 Sum_probs=95.2
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCC------------------CcceeEEEEEEEeC
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-------------QEP------------------TIGAAFFTQILSLS 55 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-------------~~~------------------~~~~~~~~~~~~~~ 55 (198)
....++|+++|++++|||||+++|+...-.-. ... .-|.+.......+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 44568999999999999999999986321100 000 01222222233344
Q ss_pred CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH
Q 048059 56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT 135 (198)
Q Consensus 56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~ 135 (198)
....++.|+||||++.|.......+..+|++++|+|++....- +....+..+... ...+++|++||+|+........
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~~~~ 177 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLL--GIRHVVLAVNKMDLVDYDQEVF 177 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHh--CCCeEEEEEEecccccchhHHH
Confidence 4556788999999988765555567899999999998754321 112222222222 2357889999999864221111
Q ss_pred ----HHHHHHHHHcC---CeEEEEccCCCCCHHH
Q 048059 136 ----EEGEQFSQENG---MFYIETSAKTAQNINE 162 (198)
Q Consensus 136 ----~~~~~~~~~~~---~~~~~~Sa~~~~~i~~ 162 (198)
.+...+....+ ++++++||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22233334444 4699999999999874
No 247
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.67 E-value=3e-15 Score=119.76 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=99.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC------------------------C---CCCCcceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKG--QFYD------------------------Q---QEPTIGAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~------------------------~---~~~~~~~~~~~~~~~~~~~ 57 (198)
..+.++|+++|+.++|||||+.+|+.. .... . .....|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 456799999999999999999998751 1110 0 0011133444445556667
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCCC--
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVVMALAANKSDLDS-- 129 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-- 129 (198)
...+.|+|+||+.+|.......+..+|++++|+|++...- + .+....+..+... ...++++++||.|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccch
Confidence 7889999999999998877788899999999999876420 0 1223333333322 2235788999999532
Q ss_pred CCC----CCHHHHHHHHHHc-----CCeEEEEccCCCCCHHH
Q 048059 130 QRE----VPTEEGEQFSQEN-----GMFYIETSAKTAQNINE 162 (198)
Q Consensus 130 ~~~----~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~ 162 (198)
..+ ...+++..+.... +++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111 1123333433333 36799999999999864
No 248
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.6e-16 Score=104.74 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=112.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
+.-|++++|.-|+|||||++.|...+. ..+.||...+ +-.+.+ ...+++-.|.+|+-..+..|..|+..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT--SE~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT--SEELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCC--hHHhee--cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 356899999999999999998886553 3444554433 222222 45678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH------Hc--------C---CeEE
Q 048059 89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ------EN--------G---MFYI 150 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~--------~---~~~~ 150 (198)
.+|+-|.+.+.+...-++.+... .-...|++|++||+|.+... ..++.+...- .. + +.+|
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 99999999988777666665543 33678999999999986543 2222221111 00 1 2367
Q ss_pred EEccCCCCCHHHHHHHHHHH
Q 048059 151 ETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~ 170 (198)
.||...+.+..+.|.|+...
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 88888888888888887543
No 249
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.66 E-value=2.5e-15 Score=114.89 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=54.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCcceeEEEEE---------------EEeCC-cEEEEEEEeCCCc-
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQFYDQ------QEPTIGAAFFTQI---------------LSLSE-ATVKFDIWDTAGQ- 69 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~~~~~------~~~~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~g~- 69 (198)
|+++|.|+||||||+++|++...... ..|+.|..+.... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998764322 2233333322110 00112 3467999999997
Q ss_pred ---hhhcccchhh---hcCCCeEEEEEECC
Q 048059 70 ---ERYHSLAPMY---YRGAAAAVVVYDIS 93 (198)
Q Consensus 70 ---~~~~~~~~~~---~~~~d~~i~v~d~~ 93 (198)
+.+..+...+ ++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4444444444 78999999999996
No 250
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=1.6e-15 Score=127.82 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=82.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------CCCCC---CcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-------------DQQEP---TIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
+...||+|+|+.++|||||+++|+...-. ..+.+ ..+.+.......+......+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 34689999999999999999999852110 00000 112222222333444567899999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
+...+..+++.+|++++|+|.++.........| ..+.. .+.|+++++||+|+.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence 988899999999999999999887665544434 33322 357899999999975
No 251
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=1.9e-15 Score=99.73 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh---------cccchhhhc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY---------HSLAPMYYR 81 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~ 81 (198)
+|+|+|.+|+|||||+++|++.... ....+..........+.+.+. .+.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999985422 111121111212233334443 4569999996321 111223348
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (198)
.+|++++|+|.+++.. +....++..+. ...|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 8999999999877322 33334444442 55799999998
No 252
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=9.2e-16 Score=119.63 Aligned_cols=169 Identities=18% Similarity=0.163 Sum_probs=113.4
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcc--------cchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHS--------LAPM 78 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~--------~~~~ 78 (198)
+..++|+|+|+||+|||||+|.|..... .--.|..|++.......+....+++.|.||+|-.+ -.. ....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 3468999999999999999999997653 33446667777777777778889999999999754 111 1234
Q ss_pred hhcCCCeEEEEEEC--CChhhHHHHHHHHHHHHHhC------CCCceEEEEEeCCCCCCC-CCCCHHHHHHHHHH--c-C
Q 048059 79 YYRGAAAAVVVYDI--SNMDTFNRANKLVQELQRQG------NQIVVMALAANKSDLDSQ-REVPTEEGEQFSQE--N-G 146 (198)
Q Consensus 79 ~~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~------~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~--~-~ 146 (198)
.+..+|++++|+|+ ++-++...+.+.++...... ....+++++.||.|+... ++.. .....+... . .
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~-~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT-KIPVVYPSAEGRSV 423 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc-CCceeccccccCcc
Confidence 46789999999998 33333333333333333211 134789999999998654 1111 111111111 1 1
Q ss_pred C-eEEEEccCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059 147 M-FYIETSAKTAQNINELFYEIAKRLARVSPPK 178 (198)
Q Consensus 147 ~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 178 (198)
. .+.++|+++++|+.++.+.|...+.....+.
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~ 456 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVVSP 456 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhcCC
Confidence 2 3556999999999999999999877766643
No 253
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.3e-15 Score=117.80 Aligned_cols=167 Identities=19% Similarity=0.150 Sum_probs=118.6
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC-----------CCCCcceeEEEEEEE---eCCcEEEEEEEeCCCchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQF--YDQ-----------QEPTIGAAFFTQILS---LSEATVKFDIWDTAGQER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~--~~~-----------~~~~~~~~~~~~~~~---~~~~~~~~~l~D~~g~~~ 71 (198)
..-.|+.|+.+..-|||||..+|+...- +.. ....-|.+....... .++..+.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4457899999999999999999885221 100 001123444433322 235668999999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHHHcCCeEE
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQENGMFYI 150 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 150 (198)
|.......+.-++++|+|+|++..-.-+.+..++..+. .+..+|.|+||+|++..+. ....+..++......+.+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999987655555555555443 4457888999999976542 223344444444556899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059 151 ETSAKTAQNINELFYEIAKRLARVSPPK 178 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 178 (198)
.+||++|.|+.++++.+++.+...+...
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 214 YVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred EEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999988776555443
No 254
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.65 E-value=2.6e-16 Score=110.20 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=72.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEe-CCcEEEEEEEeCCCchhhcccchh---hhcCCCe
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSL-SEATVKFDIWDTAGQERYHSLAPM---YYRGAAA 85 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~ 85 (198)
.-.|+++|+.|||||+|..+|..+.......+. .... ...+ ......+.++|+||+++.+..... +..++.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 356899999999999999999998654443333 2111 1112 123345789999999988764433 4788999
Q ss_pred EEEEEECCC-hhhHHHH-HHHHHHHHHh--CCCCceEEEEEeCCCCCCC
Q 048059 86 AVVVYDISN-MDTFNRA-NKLVQELQRQ--GNQIVVMALAANKSDLDSQ 130 (198)
Q Consensus 86 ~i~v~d~~~-~~s~~~~-~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~ 130 (198)
+|||+|.+. +..+.++ +.++..+... .....|++|+.||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999974 3344433 5555555442 3467899999999998653
No 255
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2e-14 Score=113.69 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.=|.++|+..-|||||+..+-.......-.-.+.-...-..+..+. ..-.+.|+|||||+.|..+...-..-+|.+|+|
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 4588999999999999999987654432222222222222233321 234688999999999999999888899999999
Q ss_pred EECCCh---hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CeEEEEccCCC
Q 048059 90 YDISNM---DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG---------MFYIETSAKTA 157 (198)
Q Consensus 90 ~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~ 157 (198)
++++|. ++.+.+. .....+.|++|..||+|..+.. ......-..+++ ..++++||++|
T Consensus 86 Va~dDGv~pQTiEAI~-------hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 86 VAADDGVMPQTIEAIN-------HAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEccCCcchhHHHHHH-------HHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 999874 3333322 2223678999999999987432 222222222222 46999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 048059 158 QNINELFYEIAKRLAR 173 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~ 173 (198)
+|+++++..++-....
T Consensus 156 ~Gi~eLL~~ill~aev 171 (509)
T COG0532 156 EGIDELLELILLLAEV 171 (509)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998764443
No 256
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=3.3e-15 Score=109.06 Aligned_cols=164 Identities=16% Similarity=0.190 Sum_probs=104.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------hcccchhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-------YHSLAPMY 79 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~ 79 (198)
....++|+++|.+|+|||||+|+|+.+.......-..+.+....... ..+.-.+.|||+||... ++.....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 45679999999999999999999997554332211222222122111 11224578999999643 66677788
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC-------CCCCHHHHHHHHHH--------
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ-------REVPTEEGEQFSQE-------- 144 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~-------- 144 (198)
+...|.++++.++.|+.---+...|.+.+... .+.++++++|.+|.... ........+.+..+
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999998875433334444433332 23689999999997422 01111111111111
Q ss_pred c--CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 145 N--GMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 145 ~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
. --|++.++...+-|++++...++..+..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 1 2367888889999999999999887653
No 257
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=108.28 Aligned_cols=164 Identities=19% Similarity=0.143 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc----cc---chhhhcCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH----SL---APMYYRGA 83 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~---~~~~~~~~ 83 (198)
.-|.++|.|++|||||++.++..+..-...|.....-..-.+.. ...-.+.+=|.||.-+-. .+ .-..++.+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 34679999999999999999986644333332221111111222 333457799999852111 11 12335678
Q ss_pred CeEEEEEECCChh---hHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE-EccCCC
Q 048059 84 AAAVVVYDISNMD---TFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIE-TSAKTA 157 (198)
Q Consensus 84 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~ 157 (198)
.++++|+|++..+ ..++.......+..+. -...|.+||+||+|+....+...+..+.+.+..++..+. +||.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999997544 3555555555555542 256799999999997554444344455555555554332 999999
Q ss_pred CCHHHHHHHHHHHHHhhC
Q 048059 158 QNINELFYEIAKRLARVS 175 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~ 175 (198)
.|+++++..+.+.+.+..
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999988777764
No 258
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=1.8e-14 Score=121.34 Aligned_cols=143 Identities=16% Similarity=0.069 Sum_probs=92.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC----CCC------------CCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYD----QQE------------PTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
.-.+|+|+|++++|||||+++|+...-.. ... ...|.+.......+.....++.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 35799999999999999999997421110 000 01233333444444455678999999999888
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC----e
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM----F 148 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~ 148 (198)
...+...++.+|++++|+|+++....+.. .++..+.. .+.|+++++||+|+.... ..+....+...++. .
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~~~ 162 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANAVPI 162 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCceeE
Confidence 87888899999999999999875444332 23333332 347899999999986433 12333444444333 1
Q ss_pred EEEEccCCC
Q 048059 149 YIETSAKTA 157 (198)
Q Consensus 149 ~~~~Sa~~~ 157 (198)
.+++|+..+
T Consensus 163 ~ipis~~~~ 171 (689)
T TIGR00484 163 QLPIGAEDN 171 (689)
T ss_pred EeccccCCC
Confidence 455555544
No 259
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.61 E-value=2.2e-14 Score=106.86 Aligned_cols=161 Identities=20% Similarity=0.262 Sum_probs=116.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEE--EeCCcEEEEEEEeCCCchhhcccchhhhcC----C
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL--SLSEATVKFDIWDTAGQERYHSLAPMYYRG----A 83 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 83 (198)
.-+|+|+|..++|||||+.+|-+.. ..-+.-|..+....+ ..+++..++.+|-..|+..+..+....+.. -
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 4689999999999999999998755 223333444333332 223445678899888887666666555532 2
Q ss_pred CeEEEEEECCChhh-HHHHHHHHHHHHHhC--------------------------------------------------
Q 048059 84 AAAVVVYDISNMDT-FNRANKLVQELQRQG-------------------------------------------------- 112 (198)
Q Consensus 84 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~-------------------------------------------------- 112 (198)
-.||++.|+++|.. ++.+..|...+.++.
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 46789999999954 578888877766432
Q ss_pred -----------CCCceEEEEEeCCCC----CCCC-------CCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 113 -----------NQIVVMALAANKSDL----DSQR-------EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 113 -----------~~~~p~iiv~nK~Dl----~~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
+-.+|++||.||+|. +.+. ......+++||..+|+.++.+|++...|++-++.+|+++
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 114899999999997 2222 223455688888999999999999999999999999998
Q ss_pred HHh
Q 048059 171 LAR 173 (198)
Q Consensus 171 ~~~ 173 (198)
.+-
T Consensus 289 ~yG 291 (473)
T KOG3905|consen 289 SYG 291 (473)
T ss_pred hcC
Confidence 764
No 260
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=2.6e-14 Score=111.21 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=116.6
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-------CCC------CCCcceeEEEE--EEEe---CCcEEEEEEEeCCCc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-------DQQ------EPTIGAAFFTQ--ILSL---SEATVKFDIWDTAGQ 69 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-------~~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~D~~g~ 69 (198)
..-.|..|+.+-.-|||||..+|+...-. .+. ...-|.+.... .+.+ ++..+.+.++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34467889999999999999998852110 000 01112332222 2222 457799999999999
Q ss_pred hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 048059 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-- 147 (198)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 147 (198)
-.|.-.....+.-+.+.++|+|++..-.-+.+.+.+..+. .+..++-|+||+|++.... ..-.++...-.|+
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCc
Confidence 9998888888899999999999987766666666666653 4567889999999976443 2223334444555
Q ss_pred -eEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 148 -FYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 148 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
..+.+|||+|.|++++++.|++++.....+
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 478999999999999999999887765544
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=5e-14 Score=118.62 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=79.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC--C--CCC------------CCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY--D--QQE------------PTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~--~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
..-.+|+|+|++++|||||+++|+...-. . ... ...|.+.......+.....++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 34679999999999999999999752100 0 000 1112333333334444567889999999988
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
+...+...++.+|++|+|+|+.+...-+. +..+..+.. .+.|+++++||+|+.
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCC
Confidence 88888888999999999999986543222 233333332 346889999999985
No 262
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.60 E-value=7.6e-14 Score=104.06 Aligned_cols=154 Identities=19% Similarity=0.160 Sum_probs=103.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------cccchhhhcC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-------HSLAPMYYRG 82 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~ 82 (198)
..+++++|.|++|||||+++|++........+.......+-.+.+ +..++++.|+||.-.- ....-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y--~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEY--KGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEee--cCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 478999999999999999999987655444443333322333444 4566889999975211 1234456789
Q ss_pred CCeEEEEEECCChhh-HHHHHHHHHHHH-----------------------------------------HhC--------
Q 048059 83 AAAAVVVYDISNMDT-FNRANKLVQELQ-----------------------------------------RQG-------- 112 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s-~~~~~~~~~~~~-----------------------------------------~~~-------- 112 (198)
||++++|+|+....+ .+.+...++... ++.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999975544 444333222211 000
Q ss_pred ----------------CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 113 ----------------NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 113 ----------------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
..-.|.+++.||.|+.. .++...+.+.. ..+.+||+.+.|++++.+.|-+.+-
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 01378899999999765 34445555444 6899999999999999999888653
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.2e-14 Score=100.84 Aligned_cols=155 Identities=24% Similarity=0.274 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc---CCCeE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR---GAAAA 86 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~ 86 (198)
+-.|+++|+.+||||+|.-+|..+.+.....+. ..+ ...+.++.. .++++|.||+++.+.....++. .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi-epn--~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI-EPN--EATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeee-ccc--eeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 357999999999999999999887544333221 111 111222222 2789999999988876666665 79999
Q ss_pred EEEEECC-ChhhHHHH-HHHHHHHHHh--CCCCceEEEEEeCCCCCCCCC--C----CHHHHHH----------------
Q 048059 87 VVVYDIS-NMDTFNRA-NKLVQELQRQ--GNQIVVMALAANKSDLDSQRE--V----PTEEGEQ---------------- 140 (198)
Q Consensus 87 i~v~d~~-~~~s~~~~-~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~--~----~~~~~~~---------------- 140 (198)
+||+|.. ......++ +.++..+... .....|++|..||.|+...+. . .+.++..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 9999974 22333333 5555555543 357789999999999842210 0 0001100
Q ss_pred --------------HHH--HcCCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 141 --------------FSQ--ENGMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 141 --------------~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|.+ ...+.|.++|++++ +++++-+||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 000 12345888999998 799999998765
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=2.8e-14 Score=116.14 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=83.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCC------C------------CCCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYD------Q------------QEPTIGAAFFTQILSLSEATVKFDIWDTA 67 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 67 (198)
....+|+|+|++++|||||+++|+. +.... . .....+.++......+....+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 11100 0 00112344445556667778899999999
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
|+..+.......+..+|++|+|+|+++.- ......+++.... .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 99888776777889999999999997642 1223444443332 4579999999999853
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.9e-14 Score=109.51 Aligned_cols=155 Identities=22% Similarity=0.233 Sum_probs=101.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCC--CCC---------------C------------CCCCcceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ--FYD---------------Q------------QEPTIGAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~--~~~---------------~------------~~~~~~~~~~~~~~~~~~~ 57 (198)
..+.++++++|+..+|||||+-+|+... .+. + ....-|.+.......+.-+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4567999999999999999999988531 100 0 0011245555666667777
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
.+.++|+|+||+..|-...-.-..+||+.|||+|+.+.+. | .+.... ..+.+. ..-..++|++||.|..+-+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~t-lGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLART-LGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHh-cCCceEEEEEEcccccccC
Confidence 7789999999988877666667789999999999987641 1 111111 112222 2344688999999987533
Q ss_pred CCCHHHH----HHHHHHc-----CCeEEEEccCCCCCHHHH
Q 048059 132 EVPTEEG----EQFSQEN-----GMFYIETSAKTAQNINEL 163 (198)
Q Consensus 132 ~~~~~~~----~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 163 (198)
+...+++ ..+.+.. +++|+++|+..|+|+.+.
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 2222222 2233333 356999999999987653
No 266
>PRK09866 hypothetical protein; Provisional
Probab=99.58 E-value=1.7e-13 Score=111.22 Aligned_cols=108 Identities=15% Similarity=0.161 Sum_probs=72.3
Q ss_pred EEEEEeCCCchhh-----cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC
Q 048059 60 KFDIWDTAGQERY-----HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP 134 (198)
Q Consensus 60 ~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 134 (198)
++.|+||||.... .......+..+|+++||+|.+...+..+ ....+.+... +...|+++|+||+|+.......
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 5779999997532 2223346889999999999976433332 2233444332 2335999999999985433333
Q ss_pred HHHHHHHHHHc-------CCeEEEEccCCCCCHHHHHHHHHH
Q 048059 135 TEEGEQFSQEN-------GMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 135 ~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
.+....+.... ...++++||++|.|++.+++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 45555554321 236999999999999999999877
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.56 E-value=1.9e-13 Score=107.64 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CCcceeEEEEEE---------------EeC-CcEEEEEEEeCCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQE------PTIGAAFFTQIL---------------SLS-EATVKFDIWDTAG 68 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~------~~~~~~~~~~~~---------------~~~-~~~~~~~l~D~~g 68 (198)
++|+++|.|+||||||+++|++........ |+.|........ ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 589999999999999999999876543222 222221110000 011 2336789999999
Q ss_pred c----hhhcccchhh---hcCCCeEEEEEECC
Q 048059 69 Q----ERYHSLAPMY---YRGAAAAVVVYDIS 93 (198)
Q Consensus 69 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 93 (198)
. .....+...+ ++++|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3333444455 78999999999996
No 268
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.9e-13 Score=107.04 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=106.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
...=|.|+|+..-|||||+..|-.......--. |....-+.. .+. ....++|.||||+..|..+...-..-+|++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V--~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTV--TLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEE--ecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 345688999999999999999987554322211 222222233 333 336788999999999999999888899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc---------CCeEEEEccCCC
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN---------GMFYIETSAKTA 157 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~ 157 (198)
++|+.++|.- ..+. .+.+......+.|++|.+||+|.++.. .+...+-.... ++.++++||++|
T Consensus 229 VLVVAadDGV-mpQT---~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 229 VLVVAADDGV-MPQT---LEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEEccCCc-cHhH---HHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 9999987642 1111 122222234678999999999976433 23332222222 356899999999
Q ss_pred CCHHHHHHHHHH--HHHhhCC
Q 048059 158 QNINELFYEIAK--RLARVSP 176 (198)
Q Consensus 158 ~~i~~~~~~l~~--~~~~~~~ 176 (198)
.|++.+.+.++- .+++...
T Consensus 302 ~nl~~L~eaill~Ae~mdLkA 322 (683)
T KOG1145|consen 302 ENLDLLEEAILLLAEVMDLKA 322 (683)
T ss_pred CChHHHHHHHHHHHHHhhccc
Confidence 999999988765 3444433
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.55 E-value=2.6e-13 Score=104.38 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=86.0
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCCh----------hhHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM----------DTFNRANKLVQELQRQ-GNQIVVMALAANKS 125 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~ 125 (198)
..+.+.+||++|+...+..|.+++.+++++|||+|+++. ..+.+....+..+... .-.+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 456788999999999999999999999999999999874 2333333333433332 33678999999999
Q ss_pred CCCC----------------CCCCCHHHHHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 126 DLDS----------------QREVPTEEGEQFSQE----------NGMFYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 126 Dl~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
|+-. ....+.+.+..+... ..+..+.++|.+..++..+|+.+.+.+....
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9621 112244555555443 2345677899999999999999988887654
No 270
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.53 E-value=2e-13 Score=98.26 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=65.5
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE--EEEEeCCCCCCCCCCCHH
Q 048059 59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM--ALAANKSDLDSQREVPTE 136 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--iiv~nK~Dl~~~~~~~~~ 136 (198)
....++++.|..-.....+. -++.+|.|+|+.+.++... .+. .+... ++++||+|+........+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~--------~qi~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG--------PGITRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH--------hHhhhccEEEEEhhhccccccccHH
Confidence 45567888884322222222 2688999999987655321 111 12233 688899998743233344
Q ss_pred HHHHHHHH--cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 137 EGEQFSQE--NGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 137 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
...+..+. .+.+++++||++|+|++++|++|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44445544 4578999999999999999999987653
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.52 E-value=3e-13 Score=113.95 Aligned_cols=144 Identities=16% Similarity=0.105 Sum_probs=90.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC--CC------------CCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ--QE------------PTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
+.-.||+|+|++++|||||+++|+. +..... .. ...+.+.......+......+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3457999999999999999999974 111000 00 1123333333344444567899999999987
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC----
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM---- 147 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 147 (198)
+.......+..+|++++|+|+...-..+... .+..+.. .+.|+++++||+|+.... ..+....+...++.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~ 161 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPVP 161 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCeee
Confidence 7666677788999999999987654333322 2333333 346788999999986433 22333444444433
Q ss_pred eEEEEccCCC
Q 048059 148 FYIETSAKTA 157 (198)
Q Consensus 148 ~~~~~Sa~~~ 157 (198)
..+++|+..+
T Consensus 162 ~~ipisa~~~ 171 (693)
T PRK00007 162 IQLPIGAEDD 171 (693)
T ss_pred EEecCccCCc
Confidence 2455566554
No 272
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.52 E-value=2.8e-13 Score=90.17 Aligned_cols=114 Identities=28% Similarity=0.391 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQE-PTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997766543332 3222 333345567788999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (198)
|+.++..+++.+ |...+......+.|.++++||.|+.....+..+.... ++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~~--------~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGLE--------FAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHHH--------HHHHhCCCcchhh
Confidence 999999998766 7766665545668899999999985444444433333 4567889999874
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.52 E-value=3e-13 Score=113.91 Aligned_cols=109 Identities=18% Similarity=0.098 Sum_probs=73.9
Q ss_pred EcCCCCCHHHHHHHHHhCCCC--C------C--CC------CCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh
Q 048059 16 LGDMGTGKTSLALRFIKGQFY--D------Q--QE------PTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY 79 (198)
Q Consensus 16 ~G~~~sGKssli~~l~~~~~~--~------~--~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 79 (198)
+|++++|||||+++|+...-. . . .. ...+.+.......+....+.+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999642110 0 0 00 001222233333444456789999999998887788888
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
+..+|++++|+|.+..........| ..+.. .+.|+++++||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999876554443333 23322 357899999999974
No 274
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.51 E-value=4.7e-13 Score=100.96 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=69.8
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-------chh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-------APM 78 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~ 78 (198)
.....++|+++|.+|+||||++|+|++....... ...+.+..............+.+|||||....... ...
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3456799999999999999999999987642211 11111111111222224567899999997533211 111
Q ss_pred hh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCC
Q 048059 79 YY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDS 129 (198)
Q Consensus 79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~ 129 (198)
++ ...|+++||..++.....+.-...++.+....+ --.+.+|+.|+.|...
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 11 268999999665432111111223333333211 1246899999999653
No 275
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.51 E-value=1.1e-13 Score=102.63 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=78.1
Q ss_pred hhhcccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 048059 70 ERYHSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF 148 (198)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (198)
+++..+.+.+++++|++++|||++++. +++.+..|+..+.. .+.|+++|+||+|+...+.+..+....+. ..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 677888888999999999999999888 89999999876643 46799999999999655544334444444 57889
Q ss_pred EEEEccCCCCCHHHHHHHHH
Q 048059 149 YIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~ 168 (198)
++++||++|.|++++|+.+.
T Consensus 100 v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEEEecCCchhHHHHHhhhc
Confidence 99999999999999998875
No 276
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.51 E-value=1.4e-12 Score=101.10 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=84.7
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh----------hHHHHHHHHHHHHH-hCCCCceEEEEEeCC
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD----------TFNRANKLVQELQR-QGNQIVVMALAANKS 125 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~ 125 (198)
..+.+.+||.+|+...+..|.+++.+++++|||+|+++.. .+++....+..+.. ..-.+.|++|++||.
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~ 261 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI 261 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence 3456789999999999999999999999999999998742 34333334444433 233678999999999
Q ss_pred CCCC--------------CC-CCCHHHHHHHHHH-----------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 126 DLDS--------------QR-EVPTEEGEQFSQE-----------NGMFYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 126 Dl~~--------------~~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
|+.. .. ..+.+.+..+... ..+..+.++|.+..++..+|+.+...+...+
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 9721 01 1234445444432 1244677889999999999999888877654
No 277
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.49 E-value=1.5e-12 Score=103.73 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=122.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
....-++++++|+.++|||.|++.+++..+...+..+....+....+...+....+.+-|.+-. ....+.+.- ..+|+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3455699999999999999999999998887766666666666666666666666777777754 222222222 67999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~ 164 (198)
+.++||.+++.+|+.....++..... ...|+++|++|+|+.+..+...-.-.+++.++++ +.+.+|.++... .++|
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf 575 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF 575 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence 99999999999998887766655443 6789999999999976654333333889999998 456777775333 8899
Q ss_pred HHHHHHHHhhC
Q 048059 165 YEIAKRLARVS 175 (198)
Q Consensus 165 ~~l~~~~~~~~ 175 (198)
..|..++.-.+
T Consensus 576 ~kL~~~A~~Ph 586 (625)
T KOG1707|consen 576 IKLATMAQYPH 586 (625)
T ss_pred HHHHHhhhCCC
Confidence 88887665544
No 278
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.49 E-value=1.3e-12 Score=104.33 Aligned_cols=165 Identities=20% Similarity=0.266 Sum_probs=115.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC--CcEEEEEEEeCCCchhhcccchhhhcC----
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS--EATVKFDIWDTAGQERYHSLAPMYYRG---- 82 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~---- 82 (198)
..-.|+|+|..++|||||+.+|.+.. ...++.+..|....+.-+ +....+.+|-..|...+..+....+..
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34689999999999999999987543 344555665554443222 223468899998876666666555432
Q ss_pred CCeEEEEEECCChhhH-HHHHHHHHHHHHhC-------------------------------------------------
Q 048059 83 AAAAVVVYDISNMDTF-NRANKLVQELQRQG------------------------------------------------- 112 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------------------------- 112 (198)
--.+|+|.|.+.|..+ +++..|+..+..+.
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 3567889999998765 56666655443211
Q ss_pred -------------CCCceEEEEEeCCCCCC----CC-------CCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 113 -------------NQIVVMALAANKSDLDS----QR-------EVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 113 -------------~~~~p~iiv~nK~Dl~~----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
+-.+|++||++|+|... .. ......++.+|..+|+.++.+|++...+++.++.+|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 01379999999999621 11 1233456788888999999999999999999999999
Q ss_pred HHHHhhCC
Q 048059 169 KRLARVSP 176 (198)
Q Consensus 169 ~~~~~~~~ 176 (198)
+.++...-
T Consensus 261 h~l~~~~f 268 (472)
T PF05783_consen 261 HRLYGFPF 268 (472)
T ss_pred HHhccCCC
Confidence 98876543
No 279
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.49 E-value=2e-13 Score=115.43 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=80.6
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCC---------------CCC---CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQ---------------FYD---QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~---------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
....||+++|+.++|||||+++|+... +.. ++..|+........+.+.+..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345899999999999999999997521 100 01123333332333446677889999999999
Q ss_pred hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
..+.......+..+|++|+|+|+.+....+....|. .+. ..+.|+++++||.|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QAL---KENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHH---HcCCCEEEEEEChhcc
Confidence 988877888899999999999987643322222222 221 2345778999999974
No 280
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=9.6e-13 Score=97.64 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=70.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc--c-c-------c
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH--S-L-------A 76 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-~-------~ 76 (198)
....++|+|+|.+|+|||||+|+|++....... ...+.+..............+.+|||||..... . . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 455799999999999999999999987643221 111112112222222344678999999975331 0 0 1
Q ss_pred hhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC--CceEEEEEeCCCCC
Q 048059 77 PMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ--IVVMALAANKSDLD 128 (198)
Q Consensus 77 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~ 128 (198)
..++. ..++++||..++....-..-...++.+....+. -.++++|.||+|..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 22332 578888887665422111112333344432221 14689999999974
No 281
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.48 E-value=7e-13 Score=96.54 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc--eeEEEEEEEeCCcEEEEEEEeCCCchhhcc-------cch----
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG--AAFFTQILSLSEATVKFDIWDTAGQERYHS-------LAP---- 77 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~---- 77 (198)
++|+|+|.+||||||++|.+++...........+ ...........+ ..+.++||||...... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998765433321111 122222223333 5678999999522111 111
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCC-------HHHHHHHHHHcCCe
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVP-------TEEGEQFSQENGMF 148 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 148 (198)
....+.+++|||+..... +-++ ...++.+....+ --..++||.|..|......+. ....+.+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 123568999999998732 2111 222222332212 123588888999865444311 12234555566777
Q ss_pred EEEEccC------CCCCHHHHHHHHHHHHHhhCC
Q 048059 149 YIETSAK------TAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 149 ~~~~Sa~------~~~~i~~~~~~l~~~~~~~~~ 176 (198)
|+.++.+ ....+.++++.+-..+.+...
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 8888777 235678888887766665543
No 282
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.47 E-value=2.7e-13 Score=87.40 Aligned_cols=136 Identities=20% Similarity=0.222 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch----hhcccchhhhcCCCeEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE----RYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~i 87 (198)
||.++|..|+|||||.+.|-+... .+..|....+ ... -.+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 689999999999999999987442 2223322221 111 157999852 22222233457899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFYE 166 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~ 166 (198)
+|-+++++++.-.. .+... ...|+|-|++|.|+.+.. +.+..+.|..+-|. ++|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f~p-----~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFPP-----GFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCCc-----ccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999988753211 11111 234588888999997633 34677888888887 6999999999999999998
Q ss_pred HHH
Q 048059 167 IAK 169 (198)
Q Consensus 167 l~~ 169 (198)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 764
No 283
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=2.4e-12 Score=110.99 Aligned_cols=104 Identities=28% Similarity=0.261 Sum_probs=72.4
Q ss_pred EEEEeCCCchhhcccchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC---
Q 048059 61 FDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--- 134 (198)
Q Consensus 61 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--- 134 (198)
+.||||||++.+..+....+..+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccch
Confidence 7899999999998887778888999999999986 44444333 2222 246999999999985322210
Q ss_pred ----------HHHHHH-----------HHH--------------HcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 135 ----------TEEGEQ-----------FSQ--------------ENGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 135 ----------~~~~~~-----------~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
.....+ ++. ...++++++||++|+|+++++.+|....
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 000011 111 1145799999999999999998876543
No 284
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.2e-13 Score=100.63 Aligned_cols=175 Identities=19% Similarity=0.152 Sum_probs=113.7
Q ss_pred CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCC--CcceeEE----------------EEEEEeC----
Q 048059 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYD---QQEP--TIGAAFF----------------TQILSLS---- 55 (198)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~---~~~~--~~~~~~~----------------~~~~~~~---- 55 (198)
|+.....+..+||.++|...-|||||..+|++--.+. +... ++-..|. ...-...
T Consensus 1 m~~~~~~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~ 80 (415)
T COG5257 1 MADPKHIQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA 80 (415)
T ss_pred CCccccCCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC
Confidence 5555555788999999999999999999998632111 1000 0000000 0000000
Q ss_pred --CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--
Q 048059 56 --EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR-- 131 (198)
Q Consensus 56 --~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-- 131 (198)
.-...+.|+|.||++-.....-.-..-.|+.++|++++.+-.-.+..+.+-.+.-. .-..++|+-||.|+....
T Consensus 81 ~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 81 ETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred CccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHH
Confidence 11246889999999865543333344579999999988654333333333333332 334799999999996422
Q ss_pred CCCHHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 132 EVPTEEGEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 132 ~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
...++++++|.+.- +++++++||..+.|++-+++.|.+.+.....+
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 23467777777753 67999999999999999999999988766554
No 285
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.44 E-value=2.4e-12 Score=100.25 Aligned_cols=163 Identities=14% Similarity=0.159 Sum_probs=116.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFY--------------DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL 75 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 75 (198)
-.||+|+.+..-|||||+..|+.+.-. ......-|.++..+...+..+.+.+.++||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 368999999999999999999864211 111223356666676677778899999999999999999
Q ss_pred chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCC
Q 048059 76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQFSQ-------ENGM 147 (198)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~ 147 (198)
.+..+.-.|++++++|+... .+.+....+..... .+.+.|||+||+|.+..+. ...++...+.. ++++
T Consensus 85 VERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 99999999999999998753 34444443333222 3456677889999876552 12233333333 3467
Q ss_pred eEEEEccCCC----------CCHHHHHHHHHHHHHhhCC
Q 048059 148 FYIETSAKTA----------QNINELFYEIAKRLARVSP 176 (198)
Q Consensus 148 ~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~~ 176 (198)
|++..|++.| .++.-+|+.|++++.....
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 8999999877 4688889988888766554
No 286
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.1e-12 Score=95.69 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=98.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCC----CCCCCCC-----CcceeEEEEEEE-----eCCcEEEEEEEeCCCchhhc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQ----FYDQQEP-----TIGAAFFTQILS-----LSEATVKFDIWDTAGQERYH 73 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~----~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~l~D~~g~~~~~ 73 (198)
..++|+.++|...||||||.++|..-. ++....+ |....+...... -.+..+++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345999999999999999999987532 2222111 111112111111 12345788999999986543
Q ss_pred ccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCC-HHHHHHHHHHc-----
Q 048059 74 SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVP-TEEGEQFSQEN----- 145 (198)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~-~~~~~~~~~~~----- 145 (198)
+..-....-.|..++|+|+......+.++.++ +.+...+ ..+||+||.|...+. ... .+..++..+.+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~c~--klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELLCK--KLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhhcc--ceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 33222233457789999998765555555433 2232222 356677888864332 111 12222222221
Q ss_pred --CCeEEEEccCCC----CCHHHHHHHHHHHHHhhCCC
Q 048059 146 --GMFYIETSAKTA----QNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 146 --~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~ 177 (198)
+.|++++||++| +++.++.+.|..++.+.+++
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 478999999999 67777777777777665554
No 287
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.43 E-value=1e-12 Score=103.05 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=115.0
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh----ccc----
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY----HSL---- 75 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---- 75 (198)
|+-......++|+|-|++|||||++.++.......+.+......... +++.+...++++||||.-.. +..
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmq 239 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ 239 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence 44456678899999999999999999988776655555433222222 34556678899999995211 001
Q ss_pred -chhhhcCCCeEEEEEECC--ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH---HHHHHHHHHcCCeE
Q 048059 76 -APMYYRGAAAAVVVYDIS--NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT---EEGEQFSQENGMFY 149 (198)
Q Consensus 76 -~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~ 149 (198)
..+..+--.+|+|+.|++ ...|.++...++..+.... .+.|.++|+||+|+.....++. +....+...-++++
T Consensus 240 sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 240 IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV 318 (620)
T ss_pred HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence 112222235678888886 4567777777888887764 5679999999999865544443 33444455556899
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 150 IETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
+++|..+.+|+.++....++.++..
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHH
Confidence 9999999999999888877765543
No 288
>PRK13768 GTPase; Provisional
Probab=99.43 E-value=1e-12 Score=98.01 Aligned_cols=110 Identities=24% Similarity=0.207 Sum_probs=69.0
Q ss_pred EEEEEeCCCchhh---cccchhhhc---C--CCeEEEEEECCChhhHHHH--HHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 60 KFDIWDTAGQERY---HSLAPMYYR---G--AAAAVVVYDISNMDTFNRA--NKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 60 ~~~l~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
.+.+||+||+.+. +..+..+++ . ++++++++|.+........ ..|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5789999998653 333333332 2 8999999999654333222 1222222211 24679999999999864
Q ss_pred CCCCCHHHHHH----------------------------HHHHcC--CeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 130 QREVPTEEGEQ----------------------------FSQENG--MFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 130 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
..+. +.... ..+..+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4322 11111 111223 57899999999999999999987663
No 289
>PTZ00258 GTP-binding protein; Provisional
Probab=99.42 E-value=6.9e-12 Score=98.03 Aligned_cols=85 Identities=19% Similarity=0.097 Sum_probs=54.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY 72 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~ 72 (198)
...++|+|+|.||||||||+++|++........|..+.+.....+.+.+. ..++.++|+||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 44689999999999999999999876644333333222211222222221 235889999995321
Q ss_pred c----cc---chhhhcCCCeEEEEEEC
Q 048059 73 H----SL---APMYYRGAAAAVVVYDI 92 (198)
Q Consensus 73 ~----~~---~~~~~~~~d~~i~v~d~ 92 (198)
. .+ .-..++++|++++|+|.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 1 11 22345789999999997
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.39 E-value=5.4e-12 Score=92.31 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=64.5
Q ss_pred EEEEEEeCCCchhhcc------cchhhhcC--CCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059 59 VKFDIWDTAGQERYHS------LAPMYYRG--AAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~------~~~~~~~~--~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (198)
++..++||||+-+... .....+.. .-++++|+|... +.+| ..+.+-...-....++|++++.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tF--MSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTF--MSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhH--HHHHHHHHHHHHhccCCeEEEEecccc
Confidence 5678999999843322 12222222 345566666532 2222 122222222233467899999999998
Q ss_pred CCCC-----CCCHHHHHHHHH---------------------HcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 128 DSQR-----EVPTEEGEQFSQ---------------------ENGMFYIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 128 ~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
.... ..+.+.-++... ..++..+-+|+.+|.|.+++|..+...+.+.
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 5321 001111111111 1356789999999999999999887765543
No 291
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=7.5e-12 Score=90.85 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=83.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------CCCCcce------eEEEEEEEe------------------CC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ--------QEPTIGA------AFFTQILSL------------------SE 56 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~--------~~~~~~~------~~~~~~~~~------------------~~ 56 (198)
....|.++|..|||||||+++++....... ....... ......+.- ..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 357899999999999999999875311000 0000000 000000000 00
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE 136 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 136 (198)
....+.+++|.|.-... ..+....+..+.|+|..+.+... .... .. ...|.++++||+|+........+
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~--~~~~-~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP--LKYP-GM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh--hhhH-hH-----HhhCCEEEEEHHHccccchhhHH
Confidence 12356677777721100 01112345556777776543211 1111 11 22467899999998654332233
Q ss_pred HHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 137 EGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
......+.. .++++++||+++.|++++++++.+.
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 444444443 3789999999999999999999874
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.38 E-value=6.7e-13 Score=97.88 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=59.8
Q ss_pred EEEEEeCCCchhhcccchhhh--------cCCCeEEEEEECCChhh-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059 60 KFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDISNMDT-FNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (198)
.+.++|||||.+....|.... ...-++++++|.....+ ...+..++..+.....-+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999988777666554 45668888999753322 122233333333222346799999999998652
Q ss_pred CC------------C-------CHHHHHHHHHH---cC-C-eEEEEccCCCCCHHHHHHHHHHHH
Q 048059 131 RE------------V-------PTEEGEQFSQE---NG-M-FYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 131 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
.. . ......+++.- .+ . .++.+|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0 01111122221 12 3 699999999999999999877653
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.37 E-value=2.1e-11 Score=89.59 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=82.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
......|+++|++|+|||||++.+.+...........|. ..+ ......++.++||||.- ... ......+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 344678999999999999999999864322111111221 111 11245567899999863 222 2345789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCCC---HHHHHH-HHHH--cCCeEEEEccCCCC
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREVP---TEEGEQ-FSQE--NGMFYIETSAKTAQ 158 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~ 158 (198)
++++|.+....... ..++..+.. .+.| +++++||.|+....... .+.++. +..+ .+.+++.+||++..
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999875443222 233333333 2345 45599999985322111 111211 2221 24689999999863
No 294
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.35 E-value=7e-12 Score=87.56 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEE---------------EEEEeC-------------------
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFT---------------QILSLS------------------- 55 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~------------------- 55 (198)
-+.|.|.|++|||||+|+.+++......-....+..+.++ ..+..+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4899999999999999999876532111111111111111 000000
Q ss_pred -CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCCCCCC
Q 048059 56 -EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI--VVMALAANKSDLDSQRE 132 (198)
Q Consensus 56 -~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~ 132 (198)
.....+.|++++|+ -.-... +.-..+.-|+|+|.+..+. +-.+..+. .-=++|+||.|+...-.
T Consensus 93 ~~~~~Dll~iEs~GN-L~~~~s--p~L~d~~~v~VidvteGe~----------~P~K~gP~i~~aDllVInK~DLa~~v~ 159 (202)
T COG0378 93 DFPDLDLLFIESVGN-LVCPFS--PDLGDHLRVVVIDVTEGED----------IPRKGGPGIFKADLLVINKTDLAPYVG 159 (202)
T ss_pred cCCcCCEEEEecCcc-eecccC--cchhhceEEEEEECCCCCC----------CcccCCCceeEeeEEEEehHHhHHHhC
Confidence 01134556666662 111111 1112337788888876542 11111111 12268899999988777
Q ss_pred CCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 133 VPTEEGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
.+.+...+-+++. +++++++|+++|+|++++++|+...+
T Consensus 160 ~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 160 ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 7778887777765 57999999999999999999987654
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.35 E-value=3.9e-11 Score=92.17 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=67.3
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CH
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PT 135 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~ 135 (198)
.+.+.|+||+|...... .....+|.++++.+...+..+.... ..+.+. .-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~-----aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIMEL-----ADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhhh-----hheEEeehhcccchhHHHHHH
Confidence 46788999999753222 2466799999997644444443332 112121 12788999998643321 11
Q ss_pred HHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 136 EEGEQFSQE-------NGMFYIETSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
.+....... +..+++.+||+++.|++++++.|.+.+....+
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~ 264 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTA 264 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 122222211 22579999999999999999999997764443
No 296
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.34 E-value=5.9e-11 Score=90.85 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=87.6
Q ss_pred eCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhH-------HHHHH---HHHHHHH-hCCCCceEEEEE
Q 048059 54 LSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTF-------NRANK---LVQELQR-QGNQIVVMALAA 122 (198)
Q Consensus 54 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~---~~~~~~~-~~~~~~p~iiv~ 122 (198)
+.-+...+.+.|++|+..-+.-|.+++.+++++|||+++++.... ..+.. +++.+.+ ..-.+.+++++.
T Consensus 190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL 269 (354)
T KOG0082|consen 190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL 269 (354)
T ss_pred EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence 333457788999999999999999999999999999999875432 22322 2333322 334678999999
Q ss_pred eCCCCCC--------------C-CCCCHHHHHHHHHHc----------CCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 123 NKSDLDS--------------Q-REVPTEEGEQFSQEN----------GMFYIETSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 123 nK~Dl~~--------------~-~~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
||.|+-+ . -....+++..+.... .+.++.+.|.+..+|+.+|+...+.+...+-
T Consensus 270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 9999821 1 123455565555431 3446777999999999999999998887654
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.34 E-value=2e-11 Score=103.60 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=76.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC--CC---------CC-------CCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY--DQ---------QE-------PTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~--~~---------~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
..-.+|+++|+.++|||||+.+|+...-. .. +. -|+........+...+..+.+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 34568999999999999999999852211 00 00 01111111112223445678999999999
Q ss_pred hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
..|.......++.+|++|+|+|+......+....|. .... .+.|+++++||.|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence 988888888889999999999987653322222232 2222 234678899999975
No 298
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.33 E-value=4.2e-11 Score=90.53 Aligned_cols=152 Identities=22% Similarity=0.208 Sum_probs=101.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC------------CCC-------------------CCCcceeEEEEEEEeCC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY------------DQQ-------------------EPTIGAAFFTQILSLSE 56 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~------------~~~-------------------~~~~~~~~~~~~~~~~~ 56 (198)
...++.+-+|...-||||||-+|+..... ... ....|.++.....-+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45689999999999999999999853110 000 01113333333333444
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE 136 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 136 (198)
...+|.+-||||++.|....-.-..-+|+.|+++|+... -+++..+ ...+.... .-.++++.+||.||....+...+
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLL-GIrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLL-GIRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHh-CCcEEEEEEeeecccccCHHHHH
Confidence 556788999999999988777777889999999998432 2333322 22233322 33578999999999865543333
Q ss_pred H----HHHHHHHcCC---eEEEEccCCCCCHHH
Q 048059 137 E----GEQFSQENGM---FYIETSAKTAQNINE 162 (198)
Q Consensus 137 ~----~~~~~~~~~~---~~~~~Sa~~~~~i~~ 162 (198)
. -..|+..+++ .++++||..|+|+-.
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3 3556677765 589999999998753
No 299
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.33 E-value=2.2e-11 Score=94.29 Aligned_cols=160 Identities=17% Similarity=0.188 Sum_probs=80.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc---eeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhh-----
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG---AAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMY----- 79 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----- 79 (198)
...++|+|+|.+|+|||||||+|.+-....+.....| ++.....+.. ...-.+.+||.||.....-....|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3578999999999999999999987433322222222 1111222211 112247899999964333223333
Q ss_pred hcCCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCC-------CCCCCCH----HHHHHHHHH---
Q 048059 80 YRGAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLD-------SQREVPT----EEGEQFSQE--- 144 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~-------~~~~~~~----~~~~~~~~~--- 144 (198)
+...|.+|++.+. .|.... .+...+.. .+.|+++|-||.|.. ..+.... +++++.+..
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 4568988887663 233332 23333443 356899999999961 1222322 333333332
Q ss_pred -cCC---eEEEEccCC--CCCHHHHHHHHHHHHHhhC
Q 048059 145 -NGM---FYIETSAKT--AQNINELFYEIAKRLARVS 175 (198)
Q Consensus 145 -~~~---~~~~~Sa~~--~~~i~~~~~~l~~~~~~~~ 175 (198)
.++ ++|.+|..+ ..++..+.+.|.+.+....
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 233 588899876 4568888888887665543
No 300
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.32 E-value=1.2e-10 Score=90.21 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh---
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY--- 72 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~--- 72 (198)
++|+++|.||||||||+++|++........|..+.+.....+.+.+. ..++.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987643333232221211222222221 135899999995321
Q ss_pred -cccch---hhhcCCCeEEEEEECC
Q 048059 73 -HSLAP---MYYRGAAAAVVVYDIS 93 (198)
Q Consensus 73 -~~~~~---~~~~~~d~~i~v~d~~ 93 (198)
..+.. ..++++|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11112 2357899999999973
No 301
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.31 E-value=1e-11 Score=106.58 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=78.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC--C---------CCCC---CcceeEEE--EEEEe--------------CC
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY--D---------QQEP---TIGAAFFT--QILSL--------------SE 56 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~--~---------~~~~---~~~~~~~~--~~~~~--------------~~ 56 (198)
.+.-.||+|+|+.++|||||+.+|+...-. . .+.+ .-+.++.. ..+.. ..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 344579999999999999999999853211 0 0000 00111111 11111 22
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
..+.+.++||||+.+|.......++.+|++|+|+|+...-......-|.. +. ..+.|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-AL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HH---HCCCCEEEEEECCccc
Confidence 36778999999999998888888899999999999986644333333322 22 2457899999999975
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=99.31 E-value=1.1e-11 Score=106.31 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=76.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC--CC---------CCC---CcceeEEE--EEEEeC--------CcEEEEEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY--DQ---------QEP---TIGAAFFT--QILSLS--------EATVKFDI 63 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~--~~---------~~~---~~~~~~~~--~~~~~~--------~~~~~~~l 63 (198)
..-.||+|+|+.++|||||+++|+...-. .. +.+ .-+.+... ..+.+. +..+.+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 34569999999999999999999862110 00 000 00111111 111121 23577899
Q ss_pred EeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 64 WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 64 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
+||||+.++.......++.+|++|+|+|+.+.-.... +..+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 9999999888778888899999999999886533222 233333332 346899999999985
No 303
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=2.9e-11 Score=84.87 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=44.0
Q ss_pred EEEEEeCCCch----hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059 60 KFDIWDTAGQE----RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125 (198)
Q Consensus 60 ~~~l~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 125 (198)
.+.|+||||.. .....+..++..+|++|+|.+.+...+-.....+.+..... ...+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 37799999964 23356778889999999999998866555555555554433 23488888884
No 304
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=9.7e-12 Score=88.73 Aligned_cols=146 Identities=18% Similarity=0.279 Sum_probs=86.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhh----cc-cchhhhcCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERY----HS-LAPMYYRGA 83 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~----~~-~~~~~~~~~ 83 (198)
.-||+++|.+||||||+=..+..+... ....-.|.+....+-+... +++.+.+||.+|++.+ .+ .....+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 358999999999999985544432211 1111122222222222221 2356889999999733 22 455678999
Q ss_pred CeEEEEEECCChhhHHHHH---HHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHH----HHHHHHcCCeEEEEcc
Q 048059 84 AAAVVVYDISNMDTFNRAN---KLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEG----EQFSQENGMFYIETSA 154 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~----~~~~~~~~~~~~~~Sa 154 (198)
+++|+|||+...+-..++. ..++.+..++ +...+.++.+|.|+.... +....+. ..+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999998765444443 3444555554 566777888999996433 2222222 2223334556777776
Q ss_pred CCC
Q 048059 155 KTA 157 (198)
Q Consensus 155 ~~~ 157 (198)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 653
No 305
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.1e-10 Score=93.23 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=102.3
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhC--------------------CCC---------CCCCCCcceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKG--------------------QFY---------DQQEPTIGAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~--------------------~~~---------~~~~~~~~~~~~~~~~~~~~~ 57 (198)
....++.+++|...+|||||+.+|+.. +.. ......-|++......+++-.
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 345799999999999999999998742 100 001122355666666777777
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHH-------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN-------RANKLVQELQRQGNQIVVMALAANKSDLDSQ 130 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (198)
...++|+|+||+..|....-.-..++|+.++|+|++.. .|+ +..+....++.. ....++|++||.|+.+=
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSW 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCc
Confidence 88899999999888877777777889999999998653 333 222333333332 24568899999998643
Q ss_pred CCCCHHHH----HHHH-HHc-----CCeEEEEccCCCCCHHHH
Q 048059 131 REVPTEEG----EQFS-QEN-----GMFYIETSAKTAQNINEL 163 (198)
Q Consensus 131 ~~~~~~~~----~~~~-~~~-----~~~~~~~Sa~~~~~i~~~ 163 (198)
.+...+++ ..|. +.. ++.|++||+..|+|+-..
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 22222222 2233 222 356999999999986544
No 306
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.26 E-value=7.3e-10 Score=86.28 Aligned_cols=154 Identities=12% Similarity=0.187 Sum_probs=94.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC----CCCC----------CCCCCcc---e----eE---EEEEE-EeCCcEEEEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG----QFYD----------QQEPTIG---A----AF---FTQIL-SLSEATVKFDIW 64 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~----~~~~----------~~~~~~~---~----~~---~~~~~-~~~~~~~~~~l~ 64 (198)
.+-|.|+|+.++|||||+++|.+. .... -..+..| + -+ ....+ ..++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999987 2221 1112222 1 11 11122 223455788999
Q ss_pred eCCCchhh--------cc------c---------------chhhhc-CCCeEEEEE-ECC----ChhhH-HHHHHHHHHH
Q 048059 65 DTAGQERY--------HS------L---------------APMYYR-GAAAAVVVY-DIS----NMDTF-NRANKLVQEL 108 (198)
Q Consensus 65 D~~g~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~~~ 108 (198)
||+|...- .. - +...+. .+++.|+|. |.+ .++.+ +.-+.++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99985211 00 0 223344 689888888 653 11222 3335666666
Q ss_pred HHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC--CCCHHHHHHHHH
Q 048059 109 QRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT--AQNINELFYEIA 168 (198)
Q Consensus 109 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~ 168 (198)
.. .++|++++.|+.|..... ..+...++..+++++++.+|+.. .+++..+++.++
T Consensus 177 k~---~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 177 KE---LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred Hh---cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 55 457999999999943222 44555677778899888877654 445665555544
No 307
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.24 E-value=1.4e-10 Score=86.96 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=50.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh----c
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY----H 73 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~----~ 73 (198)
|+++|.|+||||||+++|++........|..+.+.....+.+.+. ...++++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987654333332222221222223222 235899999995321 1
Q ss_pred ccchh---hhcCCCeEEEEEEC
Q 048059 74 SLAPM---YYRGAAAAVVVYDI 92 (198)
Q Consensus 74 ~~~~~---~~~~~d~~i~v~d~ 92 (198)
.+... .++++|++++|+|.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 12222 34789999999986
No 308
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1e-10 Score=95.79 Aligned_cols=161 Identities=20% Similarity=0.218 Sum_probs=104.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEE--------EEeCC----cEEEEEEEeCCCchhhc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQ----EPTIGAAFFTQI--------LSLSE----ATVKFDIWDTAGQERYH 73 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~----~~~~~~~~~~~~--------~~~~~----~~~~~~l~D~~g~~~~~ 73 (198)
..=++|+|+..+|||-|+..+.+......- ...+|.++.+.. +.-.. +---+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 455899999999999999999875433221 123344433322 00000 01136789999999999
Q ss_pred ccchhhhcCCCeEEEEEECCCh---hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-------------CHH-
Q 048059 74 SLAPMYYRGAAAAVVVYDISNM---DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-------------PTE- 136 (198)
Q Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-------------~~~- 136 (198)
.+.......+|.+|+|+|+... ++.+.+ +.++ .++.|+||..||+|....+.. ...
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v 627 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV 627 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchhHHH----HHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence 9999999999999999998754 333332 2222 367899999999996322110 001
Q ss_pred ----------HHHHHHH-HcC-------------CeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 137 ----------EGEQFSQ-ENG-------------MFYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 137 ----------~~~~~~~-~~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
.+.+|+. .++ +.++++||..|+||.+++-+|+.........
T Consensus 628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 1111111 111 3478999999999999999999876655443
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.24 E-value=8.1e-11 Score=90.08 Aligned_cols=104 Identities=20% Similarity=0.089 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH--
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT-- 135 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-- 135 (198)
.+.+.|+||+|..... ......+|.++++-... +-+++......+ ...|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678899999854211 23456678888885433 334443333333 2346789999999864332110
Q ss_pred H----HHHHHHH---HcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 136 E----EGEQFSQ---ENGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 136 ~----~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
. ....+.. .+..+++.+||+++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0011111 12246899999999999999999998754
No 310
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.23 E-value=2e-11 Score=91.26 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=98.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC--CCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--hcccc------h
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ--EPTIGAAFFTQILSLSEATVKFDIWDTAGQER--YHSLA------P 77 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~------~ 77 (198)
....-|.++|.+|+|||||+++|+........ ..|...+.-.. ..... ..+.+.||.|.-. -..+. -
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a--~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL 252 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSA--HLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL 252 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhc--cCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH
Confidence 33456899999999999999999964433222 22333222122 22222 2467899998521 11111 1
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce----EEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEc
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV----MALAANKSDLDSQREVPTEEGEQFSQENGMFYIETS 153 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (198)
.....+|.++.|.|+++|..-++.+..+..+.....+..| ++=|-||.|..+.... ..+++ .+.+|
T Consensus 253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n~--~v~is 322 (410)
T KOG0410|consen 253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKNL--DVGIS 322 (410)
T ss_pred HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccCC--ccccc
Confidence 2346799999999999998877777777777665433333 3456677886432211 11122 56789
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCC
Q 048059 154 AKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
+++|+|++++.+.+-.++.....
T Consensus 323 altgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred cccCccHHHHHHHHHHHhhhhhe
Confidence 99999999999998887765544
No 311
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.9e-10 Score=94.91 Aligned_cols=125 Identities=22% Similarity=0.114 Sum_probs=89.3
Q ss_pred CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC--C------------CCCCcceeEEEEEEEeCCc-EEEEEE
Q 048059 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKG--QFYD--Q------------QEPTIGAAFFTQILSLSEA-TVKFDI 63 (198)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~-~~~~~l 63 (198)
|++....+.-.||.|+|+..+|||||..+|+.. .... . ....-|.+.........+. .+.+.|
T Consensus 1 ~~~~~~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNl 80 (697)
T COG0480 1 MARLMPLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINL 80 (697)
T ss_pred CCcccccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEE
Confidence 444444566789999999999999999998742 1110 0 0011244555555555556 589999
Q ss_pred EeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 64 WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 64 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
+|||||-+|.......++-+|++++|+|+...-..+...-|.+.. ..+.|.++++||.|...
T Consensus 81 IDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 81 IDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred eCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccc
Confidence 999999999999999999999999999998654444434444432 34578999999999753
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=6.2e-10 Score=91.21 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=71.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----------cch
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----------LAP 77 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~ 77 (198)
...++|+|+|.+|+||||++|.|++...........+++. ...+........+.++||||...... ...
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 3458999999999999999999998754332211112221 11111111235688999999653210 111
Q ss_pred hhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCCC
Q 048059 78 MYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQI--VVMALAANKSDLDS 129 (198)
Q Consensus 78 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~ 129 (198)
.++. ..|++|+|..++.......-..++..+....+.. ..+|||.|+.|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 5899999988753322212224444554433321 35889999999754
No 313
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.17 E-value=1.5e-10 Score=91.94 Aligned_cols=163 Identities=21% Similarity=0.388 Sum_probs=121.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
.+.+|+.|+|..++|||+|+.+++.+.|.....+. +.. +.+++..++....+.+.|.+|... ..|...+|++|
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~-~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGR-FKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCc-Ccc-ceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 45789999999999999999999988877655443 333 355566677777788888888432 34666789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCC--CCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLD--SQREVPTEEGEQFSQ-ENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~ 163 (198)
|||...+..+++.+..+...+.... ...+|+++++++.-.. ..+.+....+..++. ...+.+|+.++.+|.++..+
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 9999999999999988777766533 3557788888775543 233444455555544 44678999999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 048059 164 FYEIAKRLARVSPP 177 (198)
Q Consensus 164 ~~~l~~~~~~~~~~ 177 (198)
|+.+..++......
T Consensus 181 f~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 181 FQEVAQKIVQLRKY 194 (749)
T ss_pred HHHHHHHHHHHHhh
Confidence 99998887766444
No 314
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.15 E-value=2.1e-09 Score=81.23 Aligned_cols=141 Identities=15% Similarity=0.166 Sum_probs=72.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---c
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ----------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---L 75 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~ 75 (198)
..++|+|+|.+|+|||||++.|++....... ..+.........+.-++..+.+.++||||...... .
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4799999999999999999999985443321 11222233333445566778999999998421100 0
Q ss_pred -----------chhhh-------------cCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059 76 -----------APMYY-------------RGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ 130 (198)
Q Consensus 76 -----------~~~~~-------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (198)
...++ ...|+++|.++.+... +..+ ...+..+ ....++|-|+.|+|.-..
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL----SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH----TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh----cccccEEeEEecccccCH
Confidence 00111 2478999999976422 2222 1233333 345688999999996331
Q ss_pred CCC--CHHHHHHHHHHcCCeEEEEcc
Q 048059 131 REV--PTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~~Sa 154 (198)
.+. ..+.+.......++.+|....
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHHcCceeecccc
Confidence 111 112223333345666555433
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.15 E-value=1.6e-10 Score=86.78 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=39.4
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 117 VMALAANKSDLDSQREVPTEEGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 117 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
.-++|+||+|+........+...+..+.. .++++.+||++|+|++++++||..+
T Consensus 232 ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 232 ASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45788899999653332334444444443 5789999999999999999999774
No 316
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=7.7e-10 Score=86.09 Aligned_cols=157 Identities=18% Similarity=0.116 Sum_probs=104.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
-|...|.-.-|||||+..+++..-+... ...-|.+..............+.|+|.||++++-...-+.+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4678899999999999999985533211 112233333444444444557899999999988776667777899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE---NGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+.++.-..+..+. +..+... .....+|++||+|..+...+ .+..++.... .+.+++.+|+++|+|++++.+.|
T Consensus 82 ~~deGl~~qtgEh-L~iLdll--gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 82 AADEGLMAQTGEH-LLILDLL--GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred eCccCcchhhHHH-HHHHHhc--CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence 9965433333222 2222222 33457899999998653311 2222333322 34678999999999999999999
Q ss_pred HHHHH
Q 048059 168 AKRLA 172 (198)
Q Consensus 168 ~~~~~ 172 (198)
.....
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 98774
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.15 E-value=1.1e-09 Score=80.76 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=42.0
Q ss_pred EEEEEEeCCCchh-------------hcccchhhhc-CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059 59 VKFDIWDTAGQER-------------YHSLAPMYYR-GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124 (198)
Q Consensus 59 ~~~~l~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (198)
..+.++|+||... ...+...|++ ..+++++|+|++..-.-.........+. ....++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4688999999742 1224556666 4568899998754322222222222232 245689999999
Q ss_pred CCCCC
Q 048059 125 SDLDS 129 (198)
Q Consensus 125 ~Dl~~ 129 (198)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 318
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.10 E-value=2e-09 Score=85.46 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=78.1
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh-------HHHHH---HHHHHHHH-hCCCCceEEEEEeCC
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT-------FNRAN---KLVQELQR-QGNQIVVMALAANKS 125 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~---~~~~~~~~-~~~~~~p~iiv~nK~ 125 (198)
....+.++|++|+...+..|.+++.+++++|||+++++... ...+. .+++.+.. ..-.+.|++|+.||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 45568899999999999999999999999999999875422 12232 23333332 333678999999999
Q ss_pred CCC------CC----------C--CCCHHHHHHHHHHc------------CCeEEEEccCCCCCHHHHHHHHHHH
Q 048059 126 DLD------SQ----------R--EVPTEEGEQFSQEN------------GMFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 126 Dl~------~~----------~--~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
|+- .. - .-+.+.+..+.... .+.++.++|.+..++..+|+.+.+.
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 961 11 0 13445565555431 1246688999999999999887764
No 319
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.2e-09 Score=79.25 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEe----------C----CcEEEEEEEeCCCc----
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSL----------S----EATVKFDIWDTAGQ---- 69 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~----------~----~~~~~~~l~D~~g~---- 69 (198)
.+++.|+|.||||||||.++++.........| |+..+.....+.. . .....+.++|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999998664433333 3332222222111 0 12357889999875
Q ss_pred hhhcccchhh---hcCCCeEEEEEECC
Q 048059 70 ERYHSLAPMY---YRGAAAAVVVYDIS 93 (198)
Q Consensus 70 ~~~~~~~~~~---~~~~d~~i~v~d~~ 93 (198)
..-..+-..| ++++|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2233333334 57899999999875
No 320
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.5e-09 Score=78.35 Aligned_cols=164 Identities=19% Similarity=0.278 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---cchhhhcCCCeEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---LAPMYYRGAAAAV 87 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~~i 87 (198)
.+|+++|...|||||+-+.......+.+..--.. +.....-.+.+.-+.+++||.||+-.+.. -.+..++++.++|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflES-Tski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeec-cCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 5599999999999999877665543322211000 00011112333456789999999865543 2445678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHH--hCCCCceEEEEEeCCCCCCCC-------CCCHHHHHHHHH----HcCCeEEEEcc
Q 048059 88 VVYDISNMDTFNRANKLVQELQR--QGNQIVVMALAANKSDLDSQR-------EVPTEEGEQFSQ----ENGMFYIETSA 154 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~-------~~~~~~~~~~~~----~~~~~~~~~Sa 154 (198)
||+|+.+ +-.+.+.++...+.+ ..+++..+-|.+.|.|...+. .+......+++. +..+.++.+|.
T Consensus 107 fvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 9999865 345555555555544 235778888999999974321 111111111111 22345777777
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCC
Q 048059 155 KTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
.+ ..+-++|..+++++.+..+.
T Consensus 186 yD-HSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhchh
Confidence 66 45999999999999887765
No 321
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.05 E-value=1.5e-09 Score=77.83 Aligned_cols=94 Identities=23% Similarity=0.143 Sum_probs=65.8
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcC
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENG 146 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 146 (198)
+..++..+++++|++++|+|++++... |...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 577788899999999999999875421 22222222 24579999999999864332 233344443 2233
Q ss_pred C---eEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 147 M---FYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 147 ~---~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
. .++.+||+++.|+++++++|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 5899999999999999999988763
No 322
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.03 E-value=5.9e-09 Score=79.60 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=84.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc---c
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ----------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH---S 74 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~ 74 (198)
-..++|.++|+.|+|||||+|.|++...... ..++.........+.-++..+.++++||||.-..- .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3479999999999999999999998633222 22333444445555556677889999999852111 1
Q ss_pred -----------cchhhh--------------cCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 75 -----------LAPMYY--------------RGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 75 -----------~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
....|+ ...|+++|.+..+. ..+..+ ...+..+. ..+.+|=|+.|+|.-
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~l 175 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLS----KRVNLIPVIAKADTL 175 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHh----cccCeeeeeeccccC
Confidence 111121 13788888887653 233333 23344443 334577778999974
Q ss_pred CCC--CCCHHHHHHHHHHcCCeEEE
Q 048059 129 SQR--EVPTEEGEQFSQENGMFYIE 151 (198)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~~~~~~ 151 (198)
... ....+.+.+....+++++|.
T Consensus 176 T~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 176 TDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CHHHHHHHHHHHHHHHHHhCCceeC
Confidence 322 22234445555667888775
No 323
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=4.8e-09 Score=77.82 Aligned_cols=147 Identities=16% Similarity=0.162 Sum_probs=93.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCC----------CCCC----CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ----------FYDQ----QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
..+.+||..+|.-+-|||||..+++.-- |+.. ....-|.++...++.+.-....+-.+|+||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 4567999999999999999998876411 1100 0112244554555555555566779999999888
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcCC--
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENGM-- 147 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~~-- 147 (198)
-...-.-..++|+.|+|++++|.. +.+....+...+.. .-..++++.||+|+.+..+ ....+.+++...+++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 765555667899999999998743 33333332222222 2235788899999976443 233455666666654
Q ss_pred ---eEEEEccCC
Q 048059 148 ---FYIETSAKT 156 (198)
Q Consensus 148 ---~~~~~Sa~~ 156 (198)
|++.-||..
T Consensus 166 d~~Pii~gSal~ 177 (394)
T COG0050 166 DDTPIIRGSALK 177 (394)
T ss_pred CCcceeechhhh
Confidence 566666654
No 324
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.99 E-value=4.3e-08 Score=71.34 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-------ccchhhhcC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-------SLAPMYYRG 82 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~ 82 (198)
..+|+++|-|.+|||||+..++...-..........+.-+-.+.+.+. .+++.|.||.-.-. +..-+..+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeec
Confidence 578999999999999999999875533333333334444445555544 56799999853221 233345577
Q ss_pred CCeEEEEEECCChhhHH-HHHHHHHHHHHhCC------------------------------------------------
Q 048059 83 AAAAVVVYDISNMDTFN-RANKLVQELQRQGN------------------------------------------------ 113 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~------------------------------------------------ 113 (198)
||.+++|.|++..+.-. -++.-++.+.-+.+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 99999999998655432 22332222221111
Q ss_pred -----------------CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 114 -----------------QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 114 -----------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
.-.+++-|-||+| +++.++...+++..+ .+.+|+.-.-|++.+++.|-+.+
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence 1256667777777 455777888887766 34567777788888888877754
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=98.98 E-value=2.7e-09 Score=82.98 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=67.4
Q ss_pred hcccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYI 150 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
...+....+.++|.+++|+|+.++. ....+..|+..... .+.|+++|+||+|+....+ .+........+++.++
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~ 153 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPL 153 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEE
Confidence 3445556689999999999998765 44456677665422 4578999999999853221 1222233346788999
Q ss_pred EEccCCCCCHHHHHHHHHHH
Q 048059 151 ETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~ 170 (198)
.+||+++.|++++++.|...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999887653
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.97 E-value=1.7e-09 Score=74.96 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=64.3
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIE 151 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
++.++.+.++++|++++|+|++++..... ..+...+. ..+.|+++|+||+|+..... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 34566778889999999999987643222 12222221 13579999999999853211 11111333445678999
Q ss_pred EccCCCCCHHHHHHHHHHHHH
Q 048059 152 TSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
+||+++.|++++++.|.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999987664
No 327
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.94 E-value=5.3e-09 Score=79.56 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=66.9
Q ss_pred hhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059 77 PMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK 155 (198)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (198)
...+.++|.+++|+|+.++. ++..++.|+..+.. .+.|+++|+||+|+....+ ......+....+.+++.+||+
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999887 78888888876654 3578999999999854311 122233344578899999999
Q ss_pred CCCCHHHHHHHHHH
Q 048059 156 TAQNINELFYEIAK 169 (198)
Q Consensus 156 ~~~~i~~~~~~l~~ 169 (198)
++.|+++++..|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887653
No 328
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=8.8e-09 Score=83.85 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---------------cceeEE-----EEEEEeCCcEEEEEEEeC
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT---------------IGAAFF-----TQILSLSEATVKFDIWDT 66 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~---------------~~~~~~-----~~~~~~~~~~~~~~l~D~ 66 (198)
.....+|.++|+-+.|||+|+..|..+..+.....+ -|.... ...-...++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 455689999999999999999988765432221100 011111 111123456778999999
Q ss_pred CCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059 67 AGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127 (198)
Q Consensus 67 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (198)
||+-++.....+.++.+|++++++|+...-.+.. +..+... .....|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikha---iq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHA---IQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHH---HhccCcEEEEEehhHH
Confidence 9999999999999999999999999986654433 2222221 2356799999999995
No 329
>PRK00098 GTPase RsgA; Reviewed
Probab=98.92 E-value=5.6e-09 Score=79.88 Aligned_cols=86 Identities=21% Similarity=0.165 Sum_probs=63.4
Q ss_pred hhcCCCeEEEEEECCChhhHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNR-ANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA 157 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (198)
...++|.+++|+|++++..... +..|+..+.. .+.|+++|+||+|+..... ..+.........+.+++++||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3589999999999988765544 4667665543 4578999999999853222 122334445567889999999999
Q ss_pred CCHHHHHHHHH
Q 048059 158 QNINELFYEIA 168 (198)
Q Consensus 158 ~~i~~~~~~l~ 168 (198)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998764
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.3e-08 Score=71.45 Aligned_cols=155 Identities=13% Similarity=0.164 Sum_probs=87.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY------- 72 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------- 72 (198)
..++|.|+|.+|.|||||++.|+....... ...|.........+.-++..++++++||||....
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 379999999999999999999886543321 1122222333334445566788999999985211
Q ss_pred -------cccchhhh------------c--CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCC--
Q 048059 73 -------HSLAPMYY------------R--GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLD-- 128 (198)
Q Consensus 73 -------~~~~~~~~------------~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~-- 128 (198)
+...+.|+ . ..+.++|.+..+. .++..+ ..++..+.+. ..++-|+.|+|..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeecccccH
Confidence 11112222 1 3567777776543 444443 2344444443 3466777899953
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
+++..-.+.+++-...+++.+++-.+-+.+.-+..++.-+
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kv 239 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKV 239 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHH
Confidence 2222223344444455677777766665544444444433
No 331
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.3e-08 Score=77.06 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=94.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh--CCC--------------CCCC----CCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK--GQF--------------YDQQ----EPTIGAAFFTQILSLSEATVKFDIWDTA 67 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~--------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 67 (198)
.......|+-+|.+|||||-..|+- +.. .... ...-|....+-.++++.....+.|.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3456788999999999999998762 110 0000 1122455566677788888889999999
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM 147 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (198)
|++.|..-+-..+--+|..++|+|+...-. .+...+++..+. ++.|++=.+||.|.+.... .+...+.-..+++
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE-~qT~KLfeVcrl---R~iPI~TFiNKlDR~~rdP--~ELLdEiE~~L~i 163 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIE-PQTLKLFEVCRL---RDIPIFTFINKLDREGRDP--LELLDEIEEELGI 163 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCcc-HHHHHHHHHHhh---cCCceEEEeeccccccCCh--HHHHHHHHHHhCc
Confidence 999988777777888999999999876432 222334443322 6789999999999654332 4666676666665
Q ss_pred eE
Q 048059 148 FY 149 (198)
Q Consensus 148 ~~ 149 (198)
..
T Consensus 164 ~~ 165 (528)
T COG4108 164 QC 165 (528)
T ss_pred ce
Confidence 43
No 332
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4.8e-08 Score=75.15 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=83.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------ 73 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------ 73 (198)
..+++.++|+.|.|||||+|.|+....... ...+.........+.-++..+.++++||||....-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999987643322 11233333334444455667889999999852110
Q ss_pred --------ccchhhh-----------c--CCCeEEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 74 --------SLAPMYY-----------R--GAAAAVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 74 --------~~~~~~~-----------~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
.....|+ . ..++++|.+..+.- .+..+. ..+..+ ...+.+|=|+.|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l----~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL----SKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH----hccccccceeeccccCCHH
Confidence 0111111 1 47888888886532 233322 233333 2445677788999964322
Q ss_pred C--CCHHHHHHHHHHcCCeEEEEccCCC
Q 048059 132 E--VPTEEGEQFSQENGMFYIETSAKTA 157 (198)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (198)
+ .....+..-....++++|....-..
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 1 1223344444556777766655443
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.89 E-value=1.2e-08 Score=79.34 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=66.1
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCeEEEEccCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-PTEEGEQFSQENGMFYIETSAKTAQ 158 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (198)
..|+|.+++|++.+...++..+..|+..... .+.|++||+||+|+...... ............+.+++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999887889999998765432 45788899999999643211 1122233334578899999999999
Q ss_pred CHHHHHHHHHHH
Q 048059 159 NINELFYEIAKR 170 (198)
Q Consensus 159 ~i~~~~~~l~~~ 170 (198)
|+++++++|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998653
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=6e-09 Score=71.03 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
+++++|.+|+|||||+|+|++..... .....+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999876532 223334444444444544 4679999995
No 335
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.85 E-value=1.3e-08 Score=70.73 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=38.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 68 (198)
..++|+++|.||+|||||+|+|.+.... ...++.|.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999976532 2233445444444444332 256999998
No 336
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.2e-08 Score=78.53 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=84.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCc-------------------------------------------
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPTI------------------------------------------- 43 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~-~~~~------------------------------------------- 43 (198)
....||++.|..++||||++|+++..+.-+.. .+++
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 34689999999999999999999864332211 1110
Q ss_pred ceeEEEEEEEeCCc----EEEEEEEeCCCch---hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCc
Q 048059 44 GAAFFTQILSLSEA----TVKFDIWDTAGQE---RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV 116 (198)
Q Consensus 44 ~~~~~~~~~~~~~~----~~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 116 (198)
+.....+.++-++. .=.+.++|.||-+ ...+....+..++|++|||.++.+..+..+.+ ++..... .+.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~---~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE---EKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc---cCC
Confidence 00000111111110 0146789999954 44556677788999999999987654443333 3333322 245
Q ss_pred eEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--------CeEEEEccCC
Q 048059 117 VMALAANKSDLDSQREVPTEEGEQFSQENG--------MFYIETSAKT 156 (198)
Q Consensus 117 p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 156 (198)
.+.|+.||+|.....+...+++..-...+. =.+|+|||+.
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 688888999976544333344333333332 2478889664
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.84 E-value=9.2e-10 Score=80.69 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=81.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC----------CCCCCc----------------ceeEEEEEEEeCC------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYD----------QQEPTI----------------GAAFFTQILSLSE------ 56 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~----------~~~~~~----------------~~~~~~~~~~~~~------ 56 (198)
..+.|.|-|+||+|||||+++|...-... ...|.. ....+...+...+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45799999999999999999876421100 000100 1122233222222
Q ss_pred ------------cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059 57 ------------ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANK 124 (198)
Q Consensus 57 ------------~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (198)
..+.+.|++|.|--... -....-+|.+++|....-.+..+.++.-+-.+ .=++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEEEeC
Confidence 13567788887632211 12345589999999876655554443222222 23577799
Q ss_pred CCCCCCCCCCHHHHHHHHHH-------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 125 SDLDSQREVPTEEGEQFSQE-------NGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 125 ~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
+|....... ..+....... +..+++.+||.++.|++++++.|.+...
T Consensus 177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 995432211 1111211111 2248999999999999999999887443
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.84 E-value=2.5e-08 Score=76.61 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=96.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC--------------cceeEEEEEEEeCCc---------------
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT--------------IGAAFFTQILSLSEA--------------- 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--------------- 57 (198)
.+..+.|.+.|+.+.|||||+-.|..+..+.....+ ...+.....+.+++.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 455799999999999999999888876554322111 112222333333321
Q ss_pred ------EEEEEEEeCCCchhhcccch--hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 58 ------TVKFDIWDTAGQERYHSLAP--MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 58 ------~~~~~l~D~~g~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
+.-+.|+||.|++.|.+.+- .+-.+.|..++++.+++.-+--.-+. +.-...-..|++++.||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH----Lgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH----LGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh----hhhhhhhcCCEEEEEEecccCc
Confidence 12478999999998865433 33367899999999887644222111 1111235689999999999843
Q ss_pred CCCC--CHHHHHHHH----------------------HH--c-CCeEEEEccCCCCCHHHHHHHHHH
Q 048059 130 QREV--PTEEGEQFS----------------------QE--N-GMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 130 ~~~~--~~~~~~~~~----------------------~~--~-~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
...+ ..+++..+. -+ . -+|+|.+|+-+|+|++-+.+.+..
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 2100 111111111 11 1 248999999999998766555443
No 339
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.83 E-value=1.3e-08 Score=71.60 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=40.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 68 (198)
..++++++|.||+|||||+|+|++.... ...+..|.+.....+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 3489999999999999999999986542 2234445555444444432 477999998
No 340
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.81 E-value=5.9e-08 Score=72.42 Aligned_cols=107 Identities=17% Similarity=0.089 Sum_probs=62.2
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--HH
Q 048059 59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--TE 136 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~ 136 (198)
+.+.|++|.|--.... ....-+|.+++|.-..-.+.++.++.= +.+.. =++++||.|......-. ..
T Consensus 144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~G---imEia-----Di~vINKaD~~~A~~a~r~l~ 212 (323)
T COG1703 144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAG---IMEIA-----DIIVINKADRKGAEKAARELR 212 (323)
T ss_pred CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhh---hhhhh-----heeeEeccChhhHHHHHHHHH
Confidence 5677888886432221 233448888888765555555444322 22221 25777999954321100 11
Q ss_pred HHHHHH----HH--cCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 137 EGEQFS----QE--NGMFYIETSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 137 ~~~~~~----~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
.+..+. .. +.-+++.+||.+|+|++++++.+.++......
T Consensus 213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 111111 11 23379999999999999999999887655443
No 341
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.81 E-value=2.6e-08 Score=78.11 Aligned_cols=95 Identities=28% Similarity=0.283 Sum_probs=68.6
Q ss_pred chhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH----HHHH
Q 048059 69 QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ----FSQE 144 (198)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~~~~ 144 (198)
.+.|..+...+...++++++|+|+.+.. ..|...+.+.. ...|+++|+||+|+... ....+...+ +++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567778888889999999999987654 22444444432 25689999999998542 333344443 3556
Q ss_pred cCC---eEEEEccCCCCCHHHHHHHHHHH
Q 048059 145 NGM---FYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 145 ~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999998654
No 342
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.5e-08 Score=75.65 Aligned_cols=156 Identities=13% Similarity=0.198 Sum_probs=96.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------------CCCcceeEEEEEEEeCCc------
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-----------------------EPTIGAAFFTQILSLSEA------ 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~------ 57 (198)
.-..+++.++|...+|||||+-.|+.+..+... ..++|++.....+++...
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 445799999999999999999888876544322 122333333333333221
Q ss_pred ----EEEEEEEeCCCchhhcccchhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 58 ----TVKFDIWDTAGQERYHSLAPMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 58 ----~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
..-++++|.+|+.+|....-+.+. -.|...+|++++..-.+..-+. +-.+. .-+.|+.++++|.|+....
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~---AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIA---ALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHH---HhCCCeEEEEEeeccccch
Confidence 234789999999999876555543 3688888888876554433222 11221 2567999999999985431
Q ss_pred CC------------------------CHHHH----HHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 132 EV------------------------PTEEG----EQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 132 ~~------------------------~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
.+ +.+++ ++.+..+-.|+|.+|+-+|+|++-+-..
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 11 11222 2222222347999999999998755443
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=7.9e-08 Score=73.61 Aligned_cols=117 Identities=16% Similarity=0.312 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEEEeCCc-------------------------------
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQE-PTIGAAFFTQILSLSEA------------------------------- 57 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------- 57 (198)
..=|+++|+-..||||+|+.|+.+.++.... |.+.+++....++.+..
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 4568999999999999999999988875433 33334444444332211
Q ss_pred --------EEEEEEEeCCCch-----------hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE
Q 048059 58 --------TVKFDIWDTAGQE-----------RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM 118 (198)
Q Consensus 58 --------~~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 118 (198)
--.++++||||.- .|....+-+...+|.+|++||....+--++....+..++.+.. -+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed---ki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED---KI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc---ee
Confidence 0247899999952 1122233456789999999998655544555566666655432 46
Q ss_pred EEEEeCCCCCC
Q 048059 119 ALAANKSDLDS 129 (198)
Q Consensus 119 iiv~nK~Dl~~ 129 (198)
-||.||+|..+
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 67779999754
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.73 E-value=3.7e-08 Score=69.39 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=40.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
..++++++|.+|+|||||++++.+..+. ......+.+.....+.++ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3579999999999999999999986653 223334455444444443 34779999994
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.72 E-value=3.3e-08 Score=70.79 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=40.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
..++.++|.+|+|||||+|+|.+..... ......|++.....+.++. .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 3689999999999999999999754311 2223345565555555543 4679999993
No 346
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.68 E-value=8.1e-08 Score=66.56 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=40.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
...+++++|.+|+|||||++++.+.. .....++.+.+.....+..+. .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 35789999999999999999999654 334455666554333333332 5789999983
No 347
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.4e-07 Score=73.83 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=82.7
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
..++.+=++|+||||.||||||+.|.............| +. ..+.++...+++..+|.+ ...+.. ...-+|.
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~~miD-vaKIaDL 136 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LHQMID-VAKIADL 136 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HHHHHh-HHHhhhe
Confidence 445678888999999999999998775321111111111 12 235677788999999943 222222 3345899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-HHHH------cCCeEEEEccCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-FSQE------NGMFYIETSAKT 156 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~------~~~~~~~~Sa~~ 156 (198)
+++++|.+-.-.++.++ +++.+..+..+ .++-|+|+.|+-..... ...++. +... .|+.+|.+|.-.
T Consensus 137 VlLlIdgnfGfEMETmE-FLnil~~HGmP--rvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETME-FLNILISHGMP--RVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHHH-HHHHHhhcCCC--ceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999987554444433 44445554332 46778899998543322 222222 2221 277888888654
No 348
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.67 E-value=6.6e-08 Score=71.32 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=89.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhccc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP-TIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSL 75 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~ 75 (198)
.....+++++|.+++|||+|++.++..+....... ..|.+.....+.++. .+.++|.||. ..+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 45568999999999999999999887554433333 556555555554443 5669999992 233334
Q ss_pred chhhhcC---CCeEEEEEECCChhh-HH-HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC----CCHHHHHH------
Q 048059 76 APMYYRG---AAAAVVVYDISNMDT-FN-RANKLVQELQRQGNQIVVMALAANKSDLDSQRE----VPTEEGEQ------ 140 (198)
Q Consensus 76 ~~~~~~~---~d~~i~v~d~~~~~s-~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~~~~~~------ 140 (198)
...|+.+ ---+++++|++-+-. .+ ....|+.+ .++|+.+|.||+|...... -....+..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 4445432 233345556543221 11 11234332 5689999999999742110 00011111
Q ss_pred -HHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 141 -FSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 141 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
.+.....+...+|+.++.|+++++-.|.
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehh
Confidence 1111234566799999999988775544
No 349
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.67 E-value=1.1e-07 Score=72.55 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=42.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
...++++++|.||+|||||+|+|.+.... ...+..|.+.....+..+. .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIA-KTGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCcc-ccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 34689999999999999999999986542 2234455555444444443 46799999973
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.67 E-value=8e-08 Score=72.81 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=41.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
..++++++|.||+|||||+|+|.+...... ....|.+.....+.+.. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 468999999999999999999997653322 33445555455555433 4679999997
No 351
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=7.3e-08 Score=74.40 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=45.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
...+++.|+|-||+|||||||+|.+... ....+.+|.+.....+.+... +.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 3458899999999999999999998664 444455577766777766654 6799999963
No 352
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.64 E-value=4.1e-08 Score=67.71 Aligned_cols=59 Identities=24% Similarity=0.323 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYD------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
-.++++|++|||||||+|.|....... .......++.....+.+.... .++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 358899999999999999999753211 111111122223344454444 38999997543
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.5e-07 Score=65.37 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=56.7
Q ss_pred hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ 158 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (198)
.+.++|++++|+|+.++..- ....+...+.. ...+.|+++|+||+|+..... .......+.+.+....+.+||+.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeeccccc
Confidence 46789999999999886322 11222222322 234579999999999853221 1122223322223335779999999
Q ss_pred CHHHHHHHHHHHH
Q 048059 159 NINELFYEIAKRL 171 (198)
Q Consensus 159 ~i~~~~~~l~~~~ 171 (198)
|++++++.+...+
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987654
No 354
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.6e-08 Score=76.01 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=97.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCCC--------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG--------QFYDQQ--------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
+-.+|.|+..-.+||||.-.+++.- ..+... ...-|.+.....++++++.+++.++||||+-.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 3468999999999999999987741 111110 112356777888899999999999999999999
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF 148 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (198)
+-..+.+++-.|+++.|||.+..-.-+.+.-|.+. ..-+.|-...+||.|.....- .......-.++++.
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk~~anf--e~avdsi~ekl~ak 185 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDKLAANF--ENAVDSIEEKLGAK 185 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhhhhhhh--hhHHHHHHHHhCCc
Confidence 99999999999999999999866555555556543 345678888899999754321 22233444456664
No 355
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.62 E-value=3.6e-07 Score=81.58 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=69.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC----C--CCcceeEEEEEEEeCCcEEEEEEEeCCCch--------hhcccchh
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQFYDQQ----E--PTIGAAFFTQILSLSEATVKFDIWDTAGQE--------RYHSLAPM 78 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~ 78 (198)
.+|+|++|+||||++..- +..++-.. . ...+.+. ...+++.+.-+ ++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~av---liDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAV---LIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEE---EEcCCCccccCCCcccccHHHHHH
Confidence 489999999999999765 33332110 1 1111111 23344554444 99999941 12234555
Q ss_pred hh---------cCCCeEEEEEECCChh-----hH----HHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 79 YY---------RGAAAAVVVYDISNMD-----TF----NRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 79 ~~---------~~~d~~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
++ +..|++|+++|+.+-- .. ..+...++.+....+-.+|++|++||+|+.
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 54 3489999999976432 11 233445566666667789999999999975
No 356
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.61 E-value=2.2e-07 Score=64.32 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=55.1
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
|++++|+|+.++.+.... ++.. ......+.|+++|+||+|+...... .+....+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 689999999887654322 2221 1112346799999999998432111 11112333334567899999999999999
Q ss_pred HHHHHHHHH
Q 048059 164 FYEIAKRLA 172 (198)
Q Consensus 164 ~~~l~~~~~ 172 (198)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 999877543
No 357
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.61 E-value=1.3e-07 Score=68.09 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=82.1
Q ss_pred CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh----------HHHHHHHHHHHHHh-CCCCceEEEEEeC
Q 048059 56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT----------FNRANKLVQELQRQ-GNQIVVMALAANK 124 (198)
Q Consensus 56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~-~~~~~p~iiv~nK 124 (198)
-..+.+.++|.+|+..-+..|-+++.+.-.++|++.++..+. +++-..++..+... ...+.++++..||
T Consensus 196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence 344567799999999888999999999988888877654332 22222233333332 3467889999999
Q ss_pred CCCCCC----------------CCCCHHHHHHHHHHc----C------CeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 125 SDLDSQ----------------REVPTEEGEQFSQEN----G------MFYIETSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 125 ~Dl~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
.|+.++ ...+.+.+++|..+. + +.-..+.|.+.+|+.-+|..+...+.+.+-
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 998422 234455556665542 1 224567888999999999998888776653
No 358
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=1.5e-06 Score=63.80 Aligned_cols=117 Identities=12% Similarity=0.069 Sum_probs=64.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCC---CCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcc------cc
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG--QFYDQQE---PTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHS------LA 76 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~------~~ 76 (198)
+-.-|.|+|++++|||+|+|.|++. .+..... -|.|.- .+..... +....+.++||+|...... ..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~--~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIW--MWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceE--EEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 4467899999999999999999987 4432221 222211 1111111 1346789999999753322 11
Q ss_pred hhhhcC--CCeEEEEEECCCh-hhHHHHHHHHHHH---------HHhCCCCceEEEEEeCCCC
Q 048059 77 PMYYRG--AAAAVVVYDISNM-DTFNRANKLVQEL---------QRQGNQIVVMALAANKSDL 127 (198)
Q Consensus 77 ~~~~~~--~d~~i~v~d~~~~-~s~~~~~~~~~~~---------~~~~~~~~p~iiv~nK~Dl 127 (198)
-..+.- ++.+|+..+.... ..++.+....+.. .........+++++...++
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL 146 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence 222333 7888887766433 3334433333211 1111233446677766665
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=2.8e-07 Score=63.85 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=37.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
...+++++|.+|+|||||+|.|++..... .....+.+.......++ ..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 45889999999999999999999865321 11222333223333333 24779999983
No 360
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=7.1e-07 Score=67.76 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=92.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhC----------CCCCCC----CCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKG----------QFYDQQ----EPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
...+.+||.-+|...-|||||-.+++.- .|+.-. ...-|.++...++.+.-....+-=+|+||+..
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 3566899999999999999998877631 111100 11224444445555544445566789999988
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC---CCHHHHHHHHHHcC--
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE---VPTEEGEQFSQENG-- 146 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~-- 146 (198)
|-..--.-..+.|+.|+|+.++|.. +.+..+.+...+... -..+++.+||.|+..+.+ ..+-+++++...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 7655555567899999999998853 455544443333332 246889999999874332 22334455555554
Q ss_pred ---CeEEEEccC
Q 048059 147 ---MFYIETSAK 155 (198)
Q Consensus 147 ---~~~~~~Sa~ 155 (198)
+|++.-||+
T Consensus 207 Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 207 GDNTPVIRGSAL 218 (449)
T ss_pred CCCCCeeecchh
Confidence 567766654
No 361
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.52 E-value=5.4e-07 Score=70.18 Aligned_cols=81 Identities=16% Similarity=0.034 Sum_probs=52.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCC--cceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPT--IGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY 72 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~ 72 (198)
+++.|+|.|++|||||++.|++... .....|. +... ...+.+.+. ...+.+.|.||...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~--~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPN--AGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCc--eeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 7899999999999999999998765 3332222 2222 222223221 235789999986321
Q ss_pred ----ccc---chhhhcCCCeEEEEEECC
Q 048059 73 ----HSL---APMYYRGAAAAVVVYDIS 93 (198)
Q Consensus 73 ----~~~---~~~~~~~~d~~i~v~d~~ 93 (198)
..+ .-..++++|++++|++..
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 122 223468899999999974
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.51 E-value=8e-07 Score=68.50 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=78.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-------CC--------------CcceeEEEEEEEe-------------C
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-------EP--------------TIGAAFFTQILSL-------------S 55 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~-------~~--------------~~~~~~~~~~~~~-------------~ 55 (198)
.--|+++|++|+||||++..|......... +. ..+..+....... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999887642111000 00 0011111110000 1
Q ss_pred CcEEEEEEEeCCCchhhccc----chhh--------hcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEE
Q 048059 56 EATVKFDIWDTAGQERYHSL----APMY--------YRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAA 122 (198)
Q Consensus 56 ~~~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~ 122 (198)
...+.+.++||+|....... ...+ -...+..++|.|++... .+.++..+. +.. .+--+|.
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~----~~~---~~~giIl 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH----EAV---GLTGIIL 266 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH----hhC---CCCEEEE
Confidence 13457889999996432211 1111 12467889999987432 233322222 211 2446788
Q ss_pred eCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 123 NKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 123 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
||.|....- -.+...+...++|+..++ +|++++++-
T Consensus 267 TKlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 267 TKLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred ECCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 999954322 234555566799998888 777776654
No 363
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=4.5e-08 Score=73.13 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=99.6
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCC--CCcceeEEEE-EEEeC------------------------
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ---FYDQQE--PTIGAAFFTQ-ILSLS------------------------ 55 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~---~~~~~~--~~~~~~~~~~-~~~~~------------------------ 55 (198)
.++-.++|.-+|...-||||+++++.+-. |..+.. -|+-..+... .+..+
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~ 113 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD 113 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence 45668999999999999999999887521 111111 1110000000 00000
Q ss_pred ----Cc----EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----hhhHHHHHHHHHHHHHhCCCCceEEEEEe
Q 048059 56 ----EA----TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----MDTFNRANKLVQELQRQGNQIVVMALAAN 123 (198)
Q Consensus 56 ----~~----~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~iiv~n 123 (198)
.. -..+.|+|+||++-.....-.-..-.|++++++..+. |++.+.+ ..+.-. +-..++++-|
T Consensus 114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM--~LkhiiilQN 187 (466)
T KOG0466|consen 114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIM--KLKHIIILQN 187 (466)
T ss_pred cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHh--hhceEEEEec
Confidence 00 1247799999998654332222334677777776643 2222322 222111 2247999999
Q ss_pred CCCCCCCCC--CCHHHHHHHHHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 124 KSDLDSQRE--VPTEEGEQFSQEN---GMFYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 124 K~Dl~~~~~--~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
|.|+..+.+ ...+.++.|...- ++|++++||.-+.|++-+.++|+.++....++
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 999964432 2234555565543 67999999999999999999999988765544
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=7.8e-07 Score=73.74 Aligned_cols=117 Identities=22% Similarity=0.219 Sum_probs=80.7
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCC------------CC--CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ------------FY--DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
+...-.+|+++.+..-|||||+..|.... |. .+...+-|.+...-.+..-.+++.+.++|+||+-+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 34456899999999999999999887421 11 11223345555555555555778899999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD 126 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 126 (198)
|.+......+-+|++++++|+...-..+...-+.+.+. .+..+++|+||+|
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkid 135 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhh
Confidence 99998888899999999999875443333222222222 2334667789999
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.47 E-value=4.4e-07 Score=63.89 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=61.4
Q ss_pred hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEE
Q 048059 71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYI 150 (198)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 150 (198)
+........+.++|.+++|+|++++...... .+...+ .+.|+++|+||+|+..... .....++....+..++
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi 79 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence 3344556678899999999999876432221 122211 2358899999999853211 1111122233345689
Q ss_pred EEccCCCCCHHHHHHHHHHHHH
Q 048059 151 ETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
.+||+++.|++++.+.+...+.
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.46 E-value=6.5e-07 Score=60.99 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred hhhcCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059 78 MYYRGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK 155 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (198)
..+.++|++++|+|+.++.+.. .+..|+.. . ..+.|+++|+||+|+..+.. .....++....+..++++||+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 4578899999999998876543 33444332 2 24579999999999853221 223344455567789999999
Q ss_pred CCCC
Q 048059 156 TAQN 159 (198)
Q Consensus 156 ~~~~ 159 (198)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8753
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=98.45 E-value=5.7e-07 Score=70.09 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=35.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC-CCCCC-----cceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQFYD-QQEPT-----IGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
++|+|.+|||||||+|+|++..... ...+. -.++.....+.+.+.. .|+||||...+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 7899999999999999999754321 11111 1122223334444333 39999997653
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.44 E-value=3.2e-05 Score=52.92 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=77.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCC-Cch--------------hh--
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTA-GQE--------------RY-- 72 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-g~~--------------~~-- 72 (198)
.+||+|-|+|||||||++.++...-....+ ... .+....+.-++...-|.++|.. |.. +|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 589999999999999999888753211111 111 2334455566667777777776 321 11
Q ss_pred -----c----ccchhhhcCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH
Q 048059 73 -----H----SLAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS 142 (198)
Q Consensus 73 -----~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 142 (198)
. ......+..||++ ++|--.+ ++.. ..+.+.+........|++..+.+.+- . -..+.+.
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr--~-----P~v~~ik 150 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR--H-----PLVQRIK 150 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC--C-----hHHHHhh
Confidence 0 1112223456744 4454333 2222 23444444444456677777765552 1 1223333
Q ss_pred HHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 143 QENGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 143 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
. .+.-++. .+-+|-+.+++.+++.+-
T Consensus 151 ~-~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 151 K-LGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred h-cCCEEEE---EccchhhHHHHHHHHHhc
Confidence 3 3333333 455556688888777654
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.43 E-value=1.1e-06 Score=66.62 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=65.5
Q ss_pred CCCch-hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 048059 66 TAGQE-RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE 144 (198)
Q Consensus 66 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 144 (198)
.|||. +........+.++|++++|+|+.++.+.+.. .+.+.+ .+.|+++|+||+|+..... .+...++...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 35552 2233455678899999999999876543221 111112 2468999999999853211 1111122233
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 145 NGMFYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
.+.+++.+||+++.|++++.+.+.+.+.+..
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 4567899999999999999999888775543
No 370
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=4.9e-06 Score=60.83 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=96.7
Q ss_pred eEEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEE--EEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 11 AKLVLLGDMGT--GKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATV--KFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 11 ~~i~v~G~~~s--GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.-++|.|.+|+ ||.+|+.+|....+.....+...+.+..+++ +.+.+ .+.+.-.+--+.+.-..-.......++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti--d~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI--DNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe--cceeeecceeEEeecccchhccCCcccccceeeE
Confidence 35789999998 9999999998877665554444444444433 33332 122221221122221112223446788
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC------------------------------------
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ------------------------------------ 130 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------------------------------ 130 (198)
+++||++....+..+..|+..-...... ..+.++||.|....
T Consensus 83 vmvfdlse~s~l~alqdwl~htdinsfd--illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs 160 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINSFD--ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS 160 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccccch--hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence 9999999999999999997643222111 34677888885210
Q ss_pred ------C--CCCHHHHHHHHHHcCCeEEEEccCCC------------CCHHHHHHHHHHHHH
Q 048059 131 ------R--EVPTEEGEQFSQENGMFYIETSAKTA------------QNINELFYEIAKRLA 172 (198)
Q Consensus 131 ------~--~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~l~~~~~ 172 (198)
. -.......+|+.++++.+++.++... .|+..+|..|-..+-
T Consensus 161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 0 01123457888889999999888432 479999988876543
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.42 E-value=4.1e-06 Score=63.30 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=55.8
Q ss_pred EEEEEEEeCCCchhhcccch----h---hh-----cCCCeEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059 58 TVKFDIWDTAGQERYHSLAP----M---YY-----RGAAAAVVVYDISNM-DTFNRANKLVQELQRQGNQIVVMALAANK 124 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~----~---~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (198)
.+.+.|+||+|........- . .. ...|.+++|+|++.. +.+..+. .+.+..+ +--+|.||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~----~f~~~~~---~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAK----VFNEAVG---LTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHH----HHHhhCC---CCEEEEEc
Confidence 46788999999753222111 1 11 238999999999643 2233332 2222221 45678899
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
.|...... .+.......++|+.+++ +|++++++..
T Consensus 227 lDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 227 LDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred cCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 99643332 23444556688888887 7777766543
No 372
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.41 E-value=4.2e-06 Score=61.55 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=77.2
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh-------hHHHHHHHHHHHH----HhCCCCceEEEEEeCC
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD-------TFNRANKLVQELQ----RQGNQIVVMALAANKS 125 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~----~~~~~~~p~iiv~nK~ 125 (198)
..+.++.+|.+|+..-+..|-.++....++|||...+... +-..++..+..+. ++.-....+++..||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3456889999999999999999999999999999876432 1223333333332 2333456789999999
Q ss_pred CCCCC----------------------------CCC--CHHHHHHHHHH-------------cCCeEEEEccCCCCCHHH
Q 048059 126 DLDSQ----------------------------REV--PTEEGEQFSQE-------------NGMFYIETSAKTAQNINE 162 (198)
Q Consensus 126 Dl~~~----------------------------~~~--~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~ 162 (198)
|+..+ ... ....++.+.+. .-|.+.++.|.+.+++..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 97210 001 11122222221 124567788999999999
Q ss_pred HHHHHHHHHHhhC
Q 048059 163 LFYEIAKRLARVS 175 (198)
Q Consensus 163 ~~~~l~~~~~~~~ 175 (198)
+|+.....+...+
T Consensus 360 VFnDcrdiIqr~h 372 (379)
T KOG0099|consen 360 VFNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHHH
Confidence 9999777666554
No 373
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.40 E-value=2.5e-06 Score=65.81 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=80.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------------------CCCcceeEE-----EEEE------------
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ------------------EPTIGAAFF-----TQIL------------ 52 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~------------------~~~~~~~~~-----~~~~------------ 52 (198)
-..++|.++|+..+|||||+-.|+.+..+... .+..|.++. ...+
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 44799999999999999999877765433211 111111111 1111
Q ss_pred -EeC-CcEEEEEEEeCCCchhhcccchhhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 53 -SLS-EATVKFDIWDTAGQERYHSLAPMYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 53 -~~~-~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
.+. +...-++|+|.+|+++|...+-.-. .-.|...+++-++-.- .--..+.+.. ...-+.|+.+|.||+|+.
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgL---ALaL~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGL---ALALHVPVFVVVTKIDMC 286 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhh---hhhhcCcEEEEEEeeccC
Confidence 111 1123478999999998865332221 2245555555443211 0000111110 112456788888888864
Q ss_pred CCCCCCHHHHH-----------------------------HHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 129 SQREVPTEEGE-----------------------------QFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 129 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
.... ..+..+ .|..+.-|++|.+|--+|+|+.-+...
T Consensus 287 PANi-LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 287 PANI-LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred cHHH-HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 3221 111111 112223378999999999998755433
No 374
>PRK13796 GTPase YqeH; Provisional
Probab=98.39 E-value=6.4e-07 Score=70.46 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=39.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC----CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQF----YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
..++.++|.+|||||||+|+|+.... .....+..|++.....+.+++. ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 35799999999999999999985431 1112344455555555555443 3599999973
No 375
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.39 E-value=7e-07 Score=67.26 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQF------YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
-.+++|++|+|||||+|+|..... .........++.....+.+.+... ++||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCcc
Confidence 568899999999999999986321 111112222333455566654444 8999997653
No 376
>PRK12289 GTPase RsgA; Reviewed
Probab=98.38 E-value=7.6e-07 Score=69.43 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=34.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcc-------eeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIG-------AAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
.++|+|++|||||||+|+|++...... ....+ ++.....+.+.+.. .|+||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t-~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRV-GKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccc-ccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 379999999999999999996542211 11111 22223344443333 4999999743
No 377
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.35 E-value=1.4e-06 Score=68.53 Aligned_cols=57 Identities=21% Similarity=0.301 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFY----DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
.++.++|.+|||||||+|+|++.... ....+..|++.....+.+++. +.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 58999999999999999999974321 122334455554555544332 4699999964
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=98.35 E-value=8.7e-07 Score=68.61 Aligned_cols=94 Identities=14% Similarity=0.090 Sum_probs=55.2
Q ss_pred EEEEEEeCCCchhhcc----cchhh--hcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
+.+.|+||+|...... ....+ ..+.|.+++|.|++... ..+++..+. ... .+-.+|+||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~----~~~---~~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN----EAV---GIDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH----hcC---CCCEEEEeeecCCCCc
Confidence 4688999999743221 11111 13578899999986543 223332222 211 1345778999974332
Q ss_pred CCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 132 EVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
. .+...+...+.|+..++ +|++++++..
T Consensus 296 G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 G----AALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred c----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 2 23444455688888887 7888877654
No 379
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.33 E-value=4.7e-05 Score=59.97 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=88.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--------------CCCCCCCccee-------EE---EEEEEe-CCcEEEEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQF--------------YDQQEPTIGAA-------FF---TQILSL-SEATVKFDIW 64 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~--------------~~~~~~~~~~~-------~~---~~~~~~-~~~~~~~~l~ 64 (198)
.+=|.|+||..+|||||++++..... +.-+.+..|.+ |- -..+.+ ++..+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 46689999999999999999864211 00011111111 11 112333 4567889999
Q ss_pred eCCCch--------------hhcccch---------------hhhcC--CCeEEEEEECC----ChhhHHHH-HHHHHHH
Q 048059 65 DTAGQE--------------RYHSLAP---------------MYYRG--AAAAVVVYDIS----NMDTFNRA-NKLVQEL 108 (198)
Q Consensus 65 D~~g~~--------------~~~~~~~---------------~~~~~--~d~~i~v~d~~----~~~s~~~~-~~~~~~~ 108 (198)
|+.|.- ...+-|. ..+.. .-++++.-|.+ .++.+..+ ++..+.+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 998740 0011111 11222 33444444433 13344333 4555555
Q ss_pred HHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC--CCCHHHHHHHHH
Q 048059 109 QRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT--AQNINELFYEIA 168 (198)
Q Consensus 109 ~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~ 168 (198)
.. -++|++|+.|-.+- ....+.+...++..+++++++.+++.. .+++..++..++
T Consensus 177 k~---igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KE---IGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HH---hCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 55 35699999999984 334456778888889999998888754 445555555443
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=4.6e-06 Score=65.70 Aligned_cols=83 Identities=25% Similarity=0.299 Sum_probs=56.4
Q ss_pred cCCC-eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH----HHHcCC---eEEEE
Q 048059 81 RGAA-AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF----SQENGM---FYIET 152 (198)
Q Consensus 81 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~~~---~~~~~ 152 (198)
..++ .+++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+.. +....+....+ ++..++ .++.+
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 4444 889999987643 22444444432 2568999999999954 23333344333 455565 58999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 048059 153 SAKTAQNINELFYEIAKR 170 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~ 170 (198)
||+++.|++++++.|.+.
T Consensus 140 SAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKY 157 (365)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999998664
No 381
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.31 E-value=1.8e-06 Score=64.32 Aligned_cols=57 Identities=19% Similarity=0.126 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQ------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
-.++++|++|+|||||+|+|.+...... ......++.....+.+.+ . .++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCccc
Confidence 4688999999999999999997532211 111111222233344432 2 5999999754
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=98.30 E-value=4e-06 Score=65.79 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=56.8
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQ 158 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 158 (198)
..|+|.+++|+++..+-....++.++..+.. .+.+.+||+||+|+.... .+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 5789999999999644444455666555444 334668899999996431 111222222 346789999999999
Q ss_pred CHHHHHHHHH
Q 048059 159 NINELFYEIA 168 (198)
Q Consensus 159 ~i~~~~~~l~ 168 (198)
|++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888863
No 383
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.28 E-value=3e-06 Score=64.59 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=65.5
Q ss_pred CCCch-hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 048059 66 TAGQE-RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE 144 (198)
Q Consensus 66 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 144 (198)
.|||. +-.......+..+|++++|+|+.++.+.+.. .+...+ .+.|+++|.||+|+..... .+...++...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP-MIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh-hHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 46653 2233455677899999999999876543221 111111 2468999999999853211 1112222234
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 145 NGMFYIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
.+.+++.+||+++.|++++.+.+...+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999999988876554
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.27 E-value=1e-05 Score=64.47 Aligned_cols=65 Identities=15% Similarity=0.038 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCchhhcccc----hhh--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLA----PMY--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
.+.+.|+||+|........ ..+ ..+.+-++||.|++..+.- ......+.... .+-.+|.||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~---~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV---DVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc---CCcEEEEECccCC
Confidence 4678999999964322111 111 2357889999998654322 11222232211 2556888999964
No 385
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.26 E-value=4.7e-06 Score=63.36 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=54.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEe-------------CCcEEEEEEEeCCCch---
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSL-------------SEATVKFDIWDTAGQE--- 70 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~~~~~~l~D~~g~~--- 70 (198)
..+++.|+|.|+||||||+|.|+.........| |+..+.....+.. ......++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 468999999999999999999998766555444 2332222221110 1123578999998752
Q ss_pred -hhcccchhh---hcCCCeEEEEEECC
Q 048059 71 -RYHSLAPMY---YRGAAAAVVVYDIS 93 (198)
Q Consensus 71 -~~~~~~~~~---~~~~d~~i~v~d~~ 93 (198)
.-..+-.+| ++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 222333334 46789999888753
No 386
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=9.7e-06 Score=71.44 Aligned_cols=111 Identities=21% Similarity=0.183 Sum_probs=64.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC-CC-----CCCCcceeEEEEEEEeCCcEEEEEEEeCCCch--------hhcccchh
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQFY-DQ-----QEPTIGAAFFTQILSLSEATVKFDIWDTAGQE--------RYHSLAPM 78 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~ 78 (198)
-+|+|++|+||||++.. .+..++ .+ .....|+ ......+.+.. .++||+|.- .-...|..
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT--~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGT--RNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCC--cccCcccccce---EEEcCCcceecccCcchhhHHHHHH
Confidence 37899999999999853 222221 00 1111121 12223444433 489999841 22334554
Q ss_pred hh---------cCCCeEEEEEECCChhh-----H----HHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 79 YY---------RGAAAAVVVYDISNMDT-----F----NRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 79 ~~---------~~~d~~i~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
++ +..||+|+..|+.+--+ - ..+..-++.+...-.-..|++|++||.|+..
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 43 45899999999764211 1 1223334455555557799999999999854
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.19 E-value=1.1e-05 Score=56.10 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998865
No 388
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.18 E-value=5.3e-06 Score=63.28 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCC-C-----CCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQ-E-----PTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
-.++++|++|+|||||+|.|++....... . ....++.....+...... .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 56899999999999999999975432211 1 111122223334443222 48999997653
No 389
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=1.2e-05 Score=59.71 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=45.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQE----PTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
.-..++|+.+|.+|.|||||+..|.+..+..... |............-.+..++++++||.|.
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 3457999999999999999999999877664433 22222222333445677889999999984
No 390
>PRK13695 putative NTPase; Provisional
Probab=98.16 E-value=8.5e-05 Score=52.40 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=31.0
Q ss_pred CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 114 QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 114 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
...|++++.+|... .....++....+..++++ +.+|-+++.+.+++.+
T Consensus 125 ~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 125 SEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 45688888887532 234555666677778777 4455567777777654
No 391
>PRK00098 GTPase RsgA; Reviewed
Probab=98.14 E-value=5.6e-06 Score=63.46 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCC---c--ceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQ-EPT---I--GAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~-~~~---~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
-.++++|++|+|||||+|.|++....... .+. . .++.....+...+. ..++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 46899999999999999999875432111 110 0 12222233333333 25899999743
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=3.3e-05 Score=60.63 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=70.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCc--------------------ceeEEEEEEE-------eCCcEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYD---QQEPTI--------------------GAAFFTQILS-------LSEATV 59 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~---~~~~~~--------------------~~~~~~~~~~-------~~~~~~ 59 (198)
.-.++++|++|+||||++..|....... .....+ +.......-. ......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578899999999999999887531100 000000 1111000000 001234
Q ss_pred EEEEEeCCCchhhcccch---hhh---cCCCeEEEEEECCC-hhhHHHHHHHHHHHHHhCCCC--ceEEEEEeCCCCCCC
Q 048059 60 KFDIWDTAGQERYHSLAP---MYY---RGAAAAVVVYDISN-MDTFNRANKLVQELQRQGNQI--VVMALAANKSDLDSQ 130 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~---~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~ 130 (198)
.+.++||+|......... ..+ ....-.++|++++. .+.+.++...+.......... .+--+|.||.|....
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 688999999753322111 112 22345688888864 344444433333222110000 123577799995432
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEcc
Q 048059 131 REVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
. =.+..+....+.|+..++.
T Consensus 297 ~----G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 297 L----GGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred c----cHHHHHHHHHCcCeEEEec
Confidence 2 2345566666777666553
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.10 E-value=2.9e-05 Score=55.83 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=46.4
Q ss_pred EEEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
+.+.|+||+|...... ....++ ...+-+++|.+++... .++.+...+ ...+ +--++.||.|....
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~~---~~~lIlTKlDet~~- 155 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAFG---IDGLILTKLDETAR- 155 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHSS---TCEEEEESTTSSST-
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hccc---CceEEEEeecCCCC-
Confidence 4688999999643322 111111 2577889999986543 233333322 2211 22466799995322
Q ss_pred CCCHHHHHHHHHHcCCeEEEEc
Q 048059 132 EVPTEEGEQFSQENGMFYIETS 153 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S 153 (198)
.-.+..++...+.|+-.++
T Consensus 156 ---~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 156 ---LGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ---THHHHHHHHHHTSEEEEEE
T ss_pred ---cccceeHHHHhCCCeEEEE
Confidence 2345666667788876665
No 394
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.07 E-value=0.00021 Score=57.99 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=53.7
Q ss_pred EEEEEeCCCc-------------hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHH-HhCCCCceEEEEEeCC
Q 048059 60 KFDIWDTAGQ-------------ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ-RQGNQIVVMALAANKS 125 (198)
Q Consensus 60 ~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~iiv~nK~ 125 (198)
...++|.||. +....+..++..+.+++|+|+-- .|.+.-......+- ...+.....|+|.||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 5779999984 33455778889999999999842 12222222222222 2233456788999999
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q 048059 126 DLDSQREVPTEEGEQFSQE 144 (198)
Q Consensus 126 Dl~~~~~~~~~~~~~~~~~ 144 (198)
|+.+..-.+...++.+...
T Consensus 490 DlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred chhhhccCCHHHHHHHHhc
Confidence 9987766666777776654
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=2.3e-05 Score=62.50 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-----------------------cceeEEEEEEE-------eCCcEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT-----------------------IGAAFFTQILS-------LSEATV 59 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~~~ 59 (198)
.-.|+++|++|+||||++..|.+.......... .+.......-. ..-...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 458999999999999999987653100000000 00000000000 001124
Q ss_pred EEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECC-ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDIS-NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
.+.++||+|...... ....+. ....-.++|+|++ ....+.++. ..+.. --+--+|+||.|.....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~---~~f~~----~~~~~~I~TKlDEt~~~- 342 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI---SAYQG----HGIHGCIITKVDEAASL- 342 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH---HHhcC----CCCCEEEEEeeeCCCCc-
Confidence 578999999643221 122221 2244578888887 343343333 22211 11335777999964322
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc
Q 048059 133 VPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
=.+..++...+.++..++.
T Consensus 343 ---G~~l~~~~~~~lPi~yvt~ 361 (420)
T PRK14721 343 ---GIALDAVIRRKLVLHYVTN 361 (420)
T ss_pred ---cHHHHHHHHhCCCEEEEEC
Confidence 2345666677887766653
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.04 E-value=7.3e-05 Score=52.63 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=44.8
Q ss_pred EEEEEEEeCCCchhhc----ccchhh--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYH----SLAPMY--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
...+.++|++|..... .....+ ....+.+++|+|...... .+ .+...+.+..+ ...+|.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~--~~-~~~~~~~~~~~---~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AV-NQAKAFNEALG---ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH--HH-HHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence 3457889999974221 111111 134899999999864432 22 23333333222 355677999964422
Q ss_pred CCCHHHHHHHHHHcCCeEEE
Q 048059 132 EVPTEEGEQFSQENGMFYIE 151 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (198)
. .+...+...++|+..
T Consensus 156 g----~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 G----AALSIRAVTGKPIKF 171 (173)
T ss_pred c----hhhhhHHHHCcCeEe
Confidence 2 223355556666543
No 397
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=9.6e-06 Score=66.03 Aligned_cols=119 Identities=18% Similarity=0.094 Sum_probs=82.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCC-C-------C--------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQF-Y-------D--------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~-~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
.-.+|.+.-.-.+||||+-++++.-.- . . +....-|.+.......+.+..+.+.++||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 457888999999999999988763100 0 0 00111234444444555566889999999999999
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
.-..+..++-.|+.++|++....-.-+...-|.+. .+ .+.|.+..+||.|.-...
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~r---y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KR---YNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hh---cCCCeEEEEehhhhcCCC
Confidence 88889999999999999998655433333444433 22 457899999999975433
No 398
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.02 E-value=9.8e-06 Score=64.76 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=42.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
.+.|.+||-|||||||.||+|.+.+.. ....|+|-+--..++.+.. .+.|.|+||--
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 699999999999999999999987743 3445666554444444444 35699999963
No 399
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.99 E-value=9.1e-05 Score=56.05 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=65.0
Q ss_pred cccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIE 151 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 151 (198)
..+..--..+.|-+++|+++.+|+ +...+.+++-.... .++..+|++||.|+....+...++........+.+++.
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 334444556788888888888876 44555555433322 33455667899999754443224556666778999999
Q ss_pred EccCCCCCHHHHHHHHHHH
Q 048059 152 TSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~ 170 (198)
+|++++++++++...+..+
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999998876543
No 400
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.97 E-value=3.4e-05 Score=54.07 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=66.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeC-CCch--------------------
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDT-AGQE-------------------- 70 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~~-------------------- 70 (198)
+|++-|++|+|||||++++....... ..+.-| +....+.-++...-+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999987532111 112212 23333344555555666665 2211
Q ss_pred --hhcc----cchhhhcCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 048059 71 --RYHS----LAPMYYRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQ 143 (198)
Q Consensus 71 --~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 143 (198)
.+.. .....+..+| ++++|=-.+ +|.. ..|.+.+........|++.++-+.. .....+++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHh
Confidence 1111 1111113445 677773222 1111 2344444443345678887776652 1123567777
Q ss_pred HcCCeEEEEccCCCCCH
Q 048059 144 ENGMFYIETSAKTAQNI 160 (198)
Q Consensus 144 ~~~~~~~~~Sa~~~~~i 160 (198)
..++.+++++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 77889999887776554
No 401
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=0.00021 Score=58.39 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=69.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC------CCCCC-----------------CcceeEEEEEEE------e-CCcEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFY------DQQEP-----------------TIGAAFFTQILS------L-SEATV 59 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~------~~~~~-----------------~~~~~~~~~~~~------~-~~~~~ 59 (198)
.-.|+|+|++|+||||++..|...... ..... ..+..+....-. + ....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 457899999999999999887642100 00000 001111000000 0 01246
Q ss_pred EEEEEeCCCchhhcccch---hhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC
Q 048059 60 KFDIWDTAGQERYHSLAP---MYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP 134 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~---~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 134 (198)
.+.|+||+|........- ..+ ......++|++.+. +..++...+..+... .+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG----R 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----c
Confidence 788999999643221100 001 11234567777653 334444444443332 35668889999632 1
Q ss_pred HHHHHHHHHHcCCeEEEEcc
Q 048059 135 TEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Sa 154 (198)
.-.+.......+.++..++.
T Consensus 500 lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred hhHHHHHHHHhCCCEEEEeC
Confidence 23455666667777766653
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=97.92 E-value=8.1e-05 Score=59.71 Aligned_cols=86 Identities=14% Similarity=0.042 Sum_probs=47.2
Q ss_pred EEEEEEeCCCchhhcc----cchhh--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHS----LAPMY--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
+.+.|+||+|...... ....+ .-..+.+++|.|....+ ++......+....+ ..-+|.||.|......
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~~---i~giIlTKlD~~~rgG 257 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEALG---LTGVILTKLDGDARGG 257 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhCC---CCEEEEeCccCccccc
Confidence 5688999999532211 11111 12567889999986542 22233333332211 2356779999643222
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc
Q 048059 133 VPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
.+.......++|+.+++.
T Consensus 258 ----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 258 ----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ----HHHHHHHHHCcCEEEEeC
Confidence 245556667787666554
No 403
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00016 Score=57.09 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=69.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC---------CCCC------------CCcceeEEEEEE--E----e---C-CcE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFY---------DQQE------------PTIGAAFFTQIL--S----L---S-EAT 58 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~---------~~~~------------~~~~~~~~~~~~--~----~---~-~~~ 58 (198)
...|+++|++||||||++..|...... .... ...+..+....- . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 367999999999999999988642110 0000 001111110000 0 0 0 013
Q ss_pred EEEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
+.+.|+||+|...... ....++ ...+.++||+|++... .++...+..+... .+--+|+||.|....-
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~k~- 393 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETASS- 393 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCCCc-
Confidence 5788999999743221 112222 2356788998875322 2333333333221 1235777999964422
Q ss_pred CCHHHHHHHHHHcCCeEEEEc
Q 048059 133 VPTEEGEQFSQENGMFYIETS 153 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~S 153 (198)
=.+..++...++|+..++
T Consensus 394 ---G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 394 ---GELLKIPAVSSAPIVLMT 411 (436)
T ss_pred ---cHHHHHHHHHCcCEEEEe
Confidence 234566666788766655
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.91 E-value=2.3e-05 Score=62.86 Aligned_cols=86 Identities=14% Similarity=0.033 Sum_probs=46.8
Q ss_pred EEEEEEeCCCchhhccc----ch--hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHSL----AP--MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
..+.|+||+|....... .. .....+|.+++|+|++... +.......+.... ...-+|.||.|....-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a~~- 248 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTAKG- 248 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCCcc-
Confidence 36889999996433211 11 1134688999999986542 2222222332211 1245778999964322
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc
Q 048059 133 VPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
=.+.......+.|+.+++.
T Consensus 249 ---G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 249 ---GGALSAVAETGAPIKFIGT 267 (437)
T ss_pred ---cHHHHHHHHHCcCEEEEec
Confidence 1234445556777665553
No 405
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.90 E-value=0.00016 Score=53.44 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=51.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-------cccchhhhcC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-------HSLAPMYYRG 82 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~ 82 (198)
.-+|.++|-|.+||||++..|++..-.............+-.+. -..-++++.|.||.-+- ....-+..+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~--y~gaKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIR--YKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEe--ccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence 35899999999999999999987543222211111111111122 23346889999985211 1123344567
Q ss_pred CCeEEEEEECCChhh
Q 048059 83 AAAAVVVYDISNMDT 97 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s 97 (198)
++.+++|.|+..|-+
T Consensus 137 cnli~~vld~~kp~~ 151 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLS 151 (358)
T ss_pred ccEEEEEeeccCccc
Confidence 899999999776544
No 406
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.88 E-value=5.1e-05 Score=60.77 Aligned_cols=86 Identities=14% Similarity=0.056 Sum_probs=48.9
Q ss_pred EEEEEEeCCCchhhccc----chh--hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHSL----APM--YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
+.+.|+||+|....... ... ...+.+.+++|+|....+ +...+...+..... ..-+|.||.|......
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~~~G 256 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDARGG 256 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCccccc
Confidence 56889999995322111 111 123578899999986543 33333333333221 3457789999643222
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc
Q 048059 133 VPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
.+...+...++|+.+++.
T Consensus 257 ----~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 257 ----AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----HHHHHHHHHCcCEEEEeC
Confidence 256666667787766554
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.87 E-value=0.0003 Score=56.57 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=47.3
Q ss_pred EEEEEEeCCCchhhc----ccchhhhc---CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYH----SLAPMYYR---GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
+.+.|+||+|..... .....++. ...-+++|++.+.. ...+...+..+... . +--+|.||.|....
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~~- 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETSS- 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEeccccccc-
Confidence 578899999974332 12222333 23466778887532 22333332332211 1 23577899996332
Q ss_pred CCCHHHHHHHHHHcCCeEEEEcc
Q 048059 132 EVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
.-.+..+....++|+..++.
T Consensus 373 ---~G~i~~~~~~~~lPv~yit~ 392 (424)
T PRK05703 373 ---LGSILSLLIESGLPISYLTN 392 (424)
T ss_pred ---ccHHHHHHHHHCCCEEEEeC
Confidence 23466777778888766654
No 408
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.86 E-value=0.00014 Score=57.12 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=77.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---cceeEEEE-----------------EEEeC----------CcEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPT---IGAAFFTQ-----------------ILSLS----------EATV 59 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~---~~~~~~~~-----------------~~~~~----------~~~~ 59 (198)
.-.|.++||+||||||-+..|............ +.++.+.. ....+ -.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 567999999999999988776642220000011 11110000 00011 1245
Q ss_pred EEEEEeCCCchhhccc----chhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE-EEEEeCCCCCCCCC
Q 048059 60 KFDIWDTAGQERYHSL----APMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM-ALAANKSDLDSQRE 132 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~ 132 (198)
.+.|+||.|...+... ...++. ...-+.+|++++.. .+++...+..+.. +|+ -+++||.|-...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~-----~~i~~~I~TKlDET~s-- 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL-----FPIDGLIFTKLDETTS-- 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc-----CCcceeEEEcccccCc--
Confidence 7889999997654432 223332 23445667777633 3455544444432 222 467799995321
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc--CCCCCHHHH-HHHHHHHHHhhCC
Q 048059 133 VPTEEGEQFSQENGMFYIETSA--KTAQNINEL-FYEIAKRLARVSP 176 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~-~~~l~~~~~~~~~ 176 (198)
.=.......+.+.|+..++- .--++|... -.||++.+..-..
T Consensus 354 --~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 354 --LGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred --hhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence 22334455555666554442 222333222 2455555554433
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.81 E-value=0.00036 Score=50.80 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=45.1
Q ss_pred EEEEEeCC-CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHH
Q 048059 60 KFDIWDTA-GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEG 138 (198)
Q Consensus 60 ~~~l~D~~-g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 138 (198)
.+.++||- |-+.+. +...+++|.+|.|.|.+- .++...++..+..... . -.++.+|.||.|-. .+..
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~el-g-~k~i~~V~NKv~e~------e~~~ 202 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL-G-IKRIFVVLNKVDEE------EELL 202 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh-C-CceEEEEEeeccch------hHHH
Confidence 35566662 433332 233467999999999753 4555554443333222 2 46899999999943 2344
Q ss_pred HHHHHHcCCe
Q 048059 139 EQFSQENGMF 148 (198)
Q Consensus 139 ~~~~~~~~~~ 148 (198)
..++...+.+
T Consensus 203 ~~~~~~~~~~ 212 (255)
T COG3640 203 RELAEELGLE 212 (255)
T ss_pred HhhhhccCCe
Confidence 5555555554
No 410
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.81 E-value=0.00013 Score=49.52 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=61.2
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059 14 VLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS 93 (198)
Q Consensus 14 ~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (198)
+.-|..|+|||++.-.+...-. .....+.-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 4567889999999765543110 000000000000 0001111678899999752 333456788899999999864
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059 94 NMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127 (198)
Q Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (198)
..++..+...++.+.... ...++.+|.|+.+.
T Consensus 78 -~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 -PTSITDAYALIKKLAKQL-RVLNFRVVVNRAES 109 (139)
T ss_pred -hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence 455666555555555433 34567788999984
No 411
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.80 E-value=0.00019 Score=46.04 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=50.0
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 13 LVLLG-DMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 13 i~v~G-~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
|.+.| ..|+||||+...+...... ...+ ...+..+.. +.+.++|+|+... ......+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence 56666 5689999998766542211 1111 111222221 6788999998642 223367788999999988
Q ss_pred CCChhhHHHHHHHHH
Q 048059 92 ISNMDTFNRANKLVQ 106 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~ 106 (198)
. +..++..+..+++
T Consensus 71 ~-~~~s~~~~~~~~~ 84 (104)
T cd02042 71 P-SPLDLDGLEKLLE 84 (104)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 4556666666655
No 412
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.80 E-value=0.00023 Score=44.60 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=53.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-chhhhcCCCeEEEEEE
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-APMYYRGAAAAVVVYD 91 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 91 (198)
+++.|..|+||||+...+...-.. .+ .....++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g----~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RG----KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CC----CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999998877653211 01 1111122 6779999986432211 1455667899999987
Q ss_pred CCChhhHHHHHHHHHHHHH-hCCCCceEEEEEe
Q 048059 92 ISNMDTFNRANKLVQELQR-QGNQIVVMALAAN 123 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~n 123 (198)
... .+........+.... ......+..++.|
T Consensus 68 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 68 PEA-LAVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred Cch-hhHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 643 344444433222222 2223445555543
No 413
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.78 E-value=0.00011 Score=50.53 Aligned_cols=33 Identities=21% Similarity=0.059 Sum_probs=23.4
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS 93 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 93 (198)
.+.+.|+||+|... ....++..+|-+|++...+
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPG 123 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCC
Confidence 46788999988542 2234778899888887654
No 414
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.78 E-value=2.4e-05 Score=60.72 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=43.4
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
...+++.|+|-|++||||+||+|..... .....+.|.+.....+..+. .+.|.|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~-C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA-CNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc-ccCCCCccchhhhhheeccC---CceeccCCce
Confidence 5679999999999999999999997664 33345556655555554443 5679999995
No 415
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.77 E-value=2.7e-05 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998763
No 416
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.76 E-value=0.00033 Score=47.15 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.--+++.|++|+|||++++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999988644
No 417
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.72 E-value=0.00021 Score=40.12 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=30.5
Q ss_pred CCCeEEEEEECCC--hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059 82 GAAAAVVVYDISN--MDTFNRANKLVQELQRQGNQIVVMALAANKSD 126 (198)
Q Consensus 82 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 126 (198)
-.++++|++|.+. +.+.++...++..++... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3689999999964 457788888888888875 4679999999998
No 418
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00062 Score=58.09 Aligned_cols=88 Identities=13% Similarity=0.076 Sum_probs=46.6
Q ss_pred EEEEEEeCCCchhhc----ccchhh--hcCCCeEEEEEECCC-hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYH----SLAPMY--YRGAAAAVVVYDISN-MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
+.+.|+||+|..... ...... ....+-.++|.|.+. .+.+.++. ..+...... -+--+|+||.|....-
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~-~i~glIlTKLDEt~~~ 339 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGE-DVDGCIITKLDEATHL 339 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccC-CCCEEEEeccCCCCCc
Confidence 468899999943221 111111 123556788999864 33344333 333221111 1335778999964322
Q ss_pred CCCHHHHHHHHHHcCCeEEEEcc
Q 048059 132 EVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
=.+..+....++|+..++.
T Consensus 340 ----G~iL~i~~~~~lPI~yit~ 358 (767)
T PRK14723 340 ----GPALDTVIRHRLPVHYVST 358 (767)
T ss_pred ----cHHHHHHHHHCCCeEEEec
Confidence 2345556667777766653
No 419
>PRK08118 topology modulation protein; Reviewed
Probab=97.71 E-value=3.3e-05 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
+|+|+|++|||||||.+.|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 420
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.69 E-value=3.5e-05 Score=54.53 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.||+|+|+|||||||+.+.|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999865
No 421
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.69 E-value=9.5e-05 Score=55.84 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=39.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCcceeEEEEE-EEeCCcEEEEEEEeCCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY----DQQEPTIGAAFFTQI-LSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~ 69 (198)
....+++.|+|.||+|||||+|++...... ....+..|.+..... +.+.... .+.++||||-
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 345789999999999999999987643221 222233444443333 3343333 3779999995
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=7.7e-05 Score=58.48 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCchhhccc----chhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSL----APMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
.+.+.|+||+|....... ...+.. ..+.+++|.+.+ ....++...+..+. .-.+--+|+||.|....-
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~----~l~i~glI~TKLDET~~~ 358 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA----EIPIDGFIITKMDETTRI 358 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC----cCCCCEEEEEcccCCCCc
Confidence 357889999997432221 112221 346667777653 22233333333221 111335778999964322
Q ss_pred CCCHHHHHHHHHHcCCeEEEEcc
Q 048059 132 EVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
=.+...+...+.|+..++.
T Consensus 359 ----G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 359 ----GDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred ----cHHHHHHHHHCCCEEEEec
Confidence 2345566667887766653
No 423
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.67 E-value=0.0056 Score=42.64 Aligned_cols=143 Identities=11% Similarity=0.102 Sum_probs=98.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+......|+++|..+.++..|..++....- . + ...+.... . +-+- .+..... ...|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~--------~-~l~Vh~a~-s----LPLp---~e~~~lR----prIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDK--E--------F-KLKVHLAK-S----LPLP---SENNNLR----PRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhcc--c--------e-eEEEEEec-c----CCCc---ccccCCC----ceeEE
Confidence 344578999999999999999999985221 0 0 11111110 0 1111 1111112 24699
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
++|++|.....+++.++.-+..+......+ .+.++.+-....+...+...++.+++..++++++.+.-...++...+-+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 999999999999999987777665543332 3556677777767778889999999999999999999888888777777
Q ss_pred HHHHHHH
Q 048059 166 EIAKRLA 172 (198)
Q Consensus 166 ~l~~~~~ 172 (198)
.|++.+.
T Consensus 147 RLL~~lq 153 (176)
T PF11111_consen 147 RLLRMLQ 153 (176)
T ss_pred HHHHHHH
Confidence 7766544
No 424
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.65 E-value=0.00031 Score=45.34 Aligned_cols=100 Identities=14% Similarity=0.128 Sum_probs=57.6
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCCh
Q 048059 16 LGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM 95 (198)
Q Consensus 16 ~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (198)
-+..|+||||+...|...-.......+.-.+. .... ...+.++|+|+... ......+..+|.++++.+. +.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-----d~~~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-~~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDL-----DLQF-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ-DL 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-----CCCC-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC-Ch
Confidence 35678999998776653221110111111110 0000 11678999998632 2334567889999999875 45
Q ss_pred hhHHHHHHHHHHHHHhCCC-CceEEEEEeC
Q 048059 96 DTFNRANKLVQELQRQGNQ-IVVMALAANK 124 (198)
Q Consensus 96 ~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK 124 (198)
.++..+..+++.+...... ...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6777777777777665433 3456677664
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.0002 Score=57.00 Aligned_cols=135 Identities=13% Similarity=0.178 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-CCC---------CC------------CCCcceeEEEEE------EEeCCcEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ-FYD---------QQ------------EPTIGAAFFTQI------LSLSEATVKF 61 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~-~~~---------~~------------~~~~~~~~~~~~------~~~~~~~~~~ 61 (198)
..-++++|++||||||++..|.... ... .. ....+....... -......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999998887421 000 00 001111111100 0001124567
Q ss_pred EEEeCCCchhhcc----cchhhhc-----CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 62 DIWDTAGQERYHS----LAPMYYR-----GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 62 ~l~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
.++||+|...... .+..++. ...-.++|+|++... +++...+..+.. --+--+|.||.|....-
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~~- 375 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADFL- 375 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCCc-
Confidence 8999999642211 1122221 234578899986443 222222222211 11335777999964322
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc
Q 048059 133 VPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
=.+...+...+.|+..++.
T Consensus 376 ---G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 376 ---GSFLELADTYSKSFTYLSV 394 (432)
T ss_pred ---cHHHHHHHHHCCCEEEEec
Confidence 2245556667777666554
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.65 E-value=4.7e-05 Score=53.58 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
+|+|+|++|||||||++.|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 427
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.65 E-value=4.5e-05 Score=51.81 Aligned_cols=20 Identities=45% Similarity=0.770 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 048059 13 LVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~ 32 (198)
|+++|+|||||||+++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.63 E-value=6.2e-05 Score=43.25 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
..+|.|+.|||||||+.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998764
No 429
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.60 E-value=0.00081 Score=47.57 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=46.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEe--C-CCchhhcccchhhhcCCCeEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWD--T-AGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D--~-~g~~~~~~~~~~~~~~~d~~i 87 (198)
=.++++|+.|+|||||++.+.+... ++.|.- .+.+..+.+..-+ . +|+...-.+...+..+.++++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i------~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-----PNGDND------EWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-----CCCcEE------EECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3688999999999999998887432 222211 1122111111111 2 234444445666667777555
Q ss_pred EE--EECCChhhHHHHHHHHHHHH
Q 048059 88 VV--YDISNMDTFNRANKLVQELQ 109 (198)
Q Consensus 88 ~v--~d~~~~~s~~~~~~~~~~~~ 109 (198)
+= .+.-|+.+.+.+..++..+.
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHH
Confidence 41 11234455555555555543
No 430
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.59 E-value=0.00044 Score=46.38 Aligned_cols=24 Identities=38% Similarity=0.726 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
--|++.|+.|+|||||++.+....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999988754
No 431
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00019 Score=56.07 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=86.1
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCC----------CC---------CCC----CCCc------ceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ----------FY---------DQQ----EPTI------GAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~----------~~---------~~~----~~~~------~~~~~~~~~~~~~~ 57 (198)
....++++++|...+||||+-..+.... +. ..| ..+. |-+...-...+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3557999999999999999866544210 00 000 0000 11111111112222
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hHHHH-H-HHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TFNRA-N-KLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
...+++.|.||+..|-...-.-..+||..++|+++...+ .|+.- + +-...+.. .......++++||.|-+....
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak-t~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH-hhccceEEEEEEeccCCccCc
Confidence 346889999998776544444456789999998875432 12221 0 11111211 223457888899999642211
Q ss_pred ---C---CHHHHHHHHHHc------CCeEEEEccCCCCCHHHHHH
Q 048059 133 ---V---PTEEGEQFSQEN------GMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 133 ---~---~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~ 165 (198)
. ..+....+.+.+ ...++++|..+|.++++...
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 112223333322 24589999999999887654
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0014 Score=51.96 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-----CC--------------------CCCcceeEEEEEEE-------eCCc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYD-----QQ--------------------EPTIGAAFFTQILS-------LSEA 57 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~-----~~--------------------~~~~~~~~~~~~~~-------~~~~ 57 (198)
...|+++|++|+||||.+..|....... .. ....+..+...... -.-.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 3579999999999999998776421100 00 00011111111000 0012
Q ss_pred EEEEEEEeCCCchhhcc----cchhhhcC--CC-eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHS----LAPMYYRG--AA-AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (198)
.+.+.++||+|...... ....++.. .+ -.++|.|++.. ...+...+..+.. -.+--+|+||.|....
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~----~~~~~~I~TKlDet~~ 327 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP----FSYKTVIFTKLDETTC 327 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeccCCCc
Confidence 45788999999643221 11122222 23 57899998754 2333333333221 1134577799996432
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEc
Q 048059 131 REVPTEEGEQFSQENGMFYIETS 153 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~S 153 (198)
- =.+..++...+.|+..++
T Consensus 328 ~----G~~l~~~~~~~~Pi~yit 346 (388)
T PRK12723 328 V----GNLISLIYEMRKEVSYVT 346 (388)
T ss_pred c----hHHHHHHHHHCCCEEEEe
Confidence 2 224555566677765554
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00072 Score=51.01 Aligned_cols=134 Identities=16% Similarity=0.107 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC----CC-----------------CCCCcceeEEEEEE--E-------e-CCcEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFY----DQ-----------------QEPTIGAAFFTQIL--S-------L-SEATV 59 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~----~~-----------------~~~~~~~~~~~~~~--~-------~-~~~~~ 59 (198)
-+++++|++|+||||++..+...... .. +....+..+....- . . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999998876542110 00 00011111111000 0 0 01245
Q ss_pred EEEEEeCCCchhhcc----cchhhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC
Q 048059 60 KFDIWDTAGQERYHS----LAPMYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV 133 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 133 (198)
.+.++||+|...... .+..++ .+.+-+++|.|++.. .+++..++..+.. -.+--++.||.|....-
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~~-- 227 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETASS-- 227 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCCc--
Confidence 788999999753211 111222 245678999997632 2233333333322 12345778999964422
Q ss_pred CHHHHHHHHHHcCCeEEEEcc
Q 048059 134 PTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Sa 154 (198)
=.+..++...+.|+..++.
T Consensus 228 --G~~l~~~~~~~~Pi~~it~ 246 (270)
T PRK06731 228 --GELLKIPAVSSAPIVLMTD 246 (270)
T ss_pred --cHHHHHHHHHCcCEEEEeC
Confidence 2345566667887766653
No 434
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.50 E-value=0.0019 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
--++++|++||||||.+..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4589999999999999998875
No 435
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.49 E-value=0.00045 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
--|++-|+-|+|||||++.+....
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999887643
No 436
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=4.3e-05 Score=59.28 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=29.5
Q ss_pred cEEEEEEEeCCCchhhc-ccchhh-----hcCCCeEEEEEECCChhhHHHHH
Q 048059 57 ATVKFDIWDTAGQERYH-SLAPMY-----YRGAAAAVVVYDISNMDTFNRAN 102 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~ 102 (198)
..+.+.|+||+|..... ++.+.. .-+.|-+|||.|++-.++-+...
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence 45789999999964322 111111 13579999999998776554443
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.48 E-value=0.00013 Score=43.13 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|++.|++||||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988764
No 438
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.46 E-value=0.0042 Score=43.64 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=51.8
Q ss_pred EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH
Q 048059 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE 139 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 139 (198)
.+.++|+|+.... .....+..+|.+|++.+.+ ..++..+..+++.+... ......++.|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 6889999875322 2344567899999998764 34566666666665552 223567889999854322 222234
Q ss_pred HHHHHcCCeEE
Q 048059 140 QFSQENGMFYI 150 (198)
Q Consensus 140 ~~~~~~~~~~~ 150 (198)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 55555676654
No 439
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00011 Score=52.87 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
=.++|+||+|||||||++.+-+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 35889999999999999988653
No 440
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.39 E-value=9.8e-05 Score=57.57 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=52.9
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh--cccchhhhcC
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY--HSLAPMYYRG 82 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~~~~~ 82 (198)
++...++-|.++|-|++||||+||.|-...... ..|..|.+ +.+++----..+-|+|+||.--- .+.....+
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCk-vAPIpGET---KVWQYItLmkrIfLIDcPGvVyps~dset~ivL-- 375 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCK-VAPIPGET---KVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL-- 375 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhccccc-ccCCCCcc---hHHHHHHHHhceeEecCCCccCCCCCchHHHHh--
Confidence 356678999999999999999999998766432 22333322 22211111235679999996322 23333343
Q ss_pred CCeEEEEEECCChhh
Q 048059 83 AAAAVVVYDISNMDT 97 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s 97 (198)
-+++=|=++.+++.
T Consensus 376 -kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 -KGVVRVENVKNPED 389 (572)
T ss_pred -hceeeeeecCCHHH
Confidence 34566667777654
No 441
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00064 Score=54.78 Aligned_cols=114 Identities=21% Similarity=0.282 Sum_probs=74.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC------------CCCC--CCCCcceeEEEEEEEe----------------CCcEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ------------FYDQ--QEPTIGAAFFTQILSL----------------SEATV 59 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~------------~~~~--~~~~~~~~~~~~~~~~----------------~~~~~ 59 (198)
-.++.++....-|||||-..|.... +... ....-+.++.+..+.. ++..+
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 4678899999999999998886421 1111 1111223333222221 22346
Q ss_pred EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCC
Q 048059 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDL 127 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (198)
-+.++|.||+-.|.+...+.++-.|+.+.|+|.-+.--.+.-.-+.+.+.++ -.|+ ++.||.|.
T Consensus 99 LiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER---IkPv-lv~NK~DR 162 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER---IKPV-LVMNKMDR 162 (842)
T ss_pred eEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh---ccce-EEeehhhH
Confidence 7899999999999999999999999999999987654444433344444443 2354 56699995
No 442
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.39 E-value=0.0011 Score=45.04 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQF 35 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~ 35 (198)
--|++-|+-|+|||||.+.+..+--
T Consensus 26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 26 DVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CEEEEEcCCcCChHHHHHHHHHHcC
Confidence 4588999999999999999886543
No 443
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.39 E-value=0.00074 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
..+|+|.|++|||||||+++|+...
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 5789999999999999999998644
No 444
>PRK06217 hypothetical protein; Validated
Probab=97.38 E-value=0.00017 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988853
No 445
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.37 E-value=0.00017 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00015 Score=53.22 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|.++|++|+|||||++-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999988763
No 447
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.37 E-value=0.0045 Score=47.98 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
.+|.|--|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 467799999999999999864
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.37 E-value=0.00018 Score=48.51 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999888744
No 449
>PRK10646 ADP-binding protein; Provisional
Probab=97.36 E-value=0.0021 Score=44.12 Aligned_cols=23 Identities=35% Similarity=0.713 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999987643
No 450
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.35 E-value=0.0017 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46899999999999999988753
No 451
>PRK03839 putative kinase; Provisional
Probab=97.34 E-value=0.00019 Score=50.87 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
+|+|+|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888753
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.34 E-value=0.00014 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 453
>PRK14530 adenylate kinase; Provisional
Probab=97.33 E-value=0.0002 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.33 E-value=0.00019 Score=52.41 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-|+|+|++|||||||++-+-+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999987765
No 455
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.33 E-value=0.00039 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
++-++|+|+.||||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 56789999999999999988764
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.32 E-value=0.00024 Score=47.44 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-.++++|++|+|||+++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 468999999999999999998654
No 457
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.30 E-value=0.00023 Score=47.36 Aligned_cols=21 Identities=43% Similarity=0.562 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.30 E-value=0.00024 Score=48.13 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|+|+|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999998864
No 459
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.29 E-value=0.00031 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
+...-|+|.|++|||||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998763
No 460
>PRK01889 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.00037 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-+++++|.+|+|||||++.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998744
No 461
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.28 E-value=0.00025 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.|+|+|++|||||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998654
No 462
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.27 E-value=0.0014 Score=50.80 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
..+|+|.|++|||||||+++|+...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998643
No 463
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.27 E-value=0.00025 Score=50.14 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 464
>PLN02200 adenylate kinase family protein
Probab=97.27 E-value=0.00035 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.+.|+|+|+|||||||+...|..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999988874
No 465
>PRK14532 adenylate kinase; Provisional
Probab=97.26 E-value=0.00026 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998875
No 466
>PRK13949 shikimate kinase; Provisional
Probab=97.26 E-value=0.0003 Score=49.43 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
+|+|+|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988775
No 467
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.23 E-value=0.0031 Score=48.84 Aligned_cols=98 Identities=19% Similarity=0.094 Sum_probs=51.0
Q ss_pred EEEEEEeCCCchhhcccchhhh--------cCCCeEEEEEECCChhhHHH-HH-HHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 59 VKFDIWDTAGQERYHSLAPMYY--------RGAAAAVVVYDISNMDTFNR-AN-KLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
....++.+.|-..-......+. -..|+++-|+|+.+-..... .. ....++.. + =+|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-A-----D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-A-----DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-C-----cEEEEecccCC
Confidence 3455777777533222222121 23688899999865433211 21 22222211 1 24777999997
Q ss_pred CCCCCCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHH
Q 048059 129 SQREVPTEEGEQFSQENG--MFYIETSAKTAQNINELFY 165 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~ 165 (198)
.... .+......++++ ++++.++.. +.+..+++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll~ 194 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG-DVDLAELLD 194 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc-CCCHHHhhc
Confidence 6553 344555555554 578887773 334444443
No 468
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.22 E-value=0.0038 Score=44.09 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=59.2
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE 136 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 136 (198)
..+.+.++|+|+... ......+..+|.++++...+ ..+...+..+++.+... +.|+.+|+|+.|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 456889999996532 23345568899999999875 34666666666666543 3467899999996432 245
Q ss_pred HHHHHHHHcCCeEEE
Q 048059 137 EGEQFSQENGMFYIE 151 (198)
Q Consensus 137 ~~~~~~~~~~~~~~~ 151 (198)
+..++.+..+++++.
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 677788888887653
No 469
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.22 E-value=0.0016 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~ 34 (198)
|+|+|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887643
No 470
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.21 E-value=0.00029 Score=50.08 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-|+|+|++||||||+++.|..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998873
No 471
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.21 E-value=0.0038 Score=50.99 Aligned_cols=87 Identities=9% Similarity=0.038 Sum_probs=43.5
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
.+|||=|+=+.-..+..+.+.+.++.+ .....|+|+++|-+-.......+......+....++..+...+-...-+.+.
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~ 275 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKF 275 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHH
Confidence 346666664433333333333333322 1255789999887776433333333334444555555555555544445555
Q ss_pred HHHHHHHH
Q 048059 164 FYEIAKRL 171 (198)
Q Consensus 164 ~~~l~~~~ 171 (198)
+..|+...
T Consensus 276 L~ric~~e 283 (634)
T KOG1970|consen 276 LKRICRIE 283 (634)
T ss_pred HHHHHHHh
Confidence 55555443
No 472
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.20 E-value=0.0013 Score=51.17 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
..+|+|.|++|||||||+++|+...
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999998644
No 473
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0038 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.-+|+|+||.|+|||||+.-|++..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCC
Confidence 4589999999999999998887643
No 474
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.20 E-value=0.0046 Score=47.17 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 048059 12 KLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~ 31 (198)
-|+|.|++||||||+++.|-
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999884
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.19 E-value=0.00033 Score=50.43 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 476
>PRK08233 hypothetical protein; Provisional
Probab=97.19 E-value=0.00037 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..-|+|.|.+|||||||.+.|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 366889999999999999998853
No 477
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.00032 Score=51.81 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.4
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...++++|+|++|||||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34589999999999999999988753
No 478
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.18 E-value=0.00036 Score=44.87 Aligned_cols=21 Identities=48% Similarity=0.782 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 048059 11 AKLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~ 31 (198)
--++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999998865
No 479
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.18 E-value=0.00041 Score=46.92 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 480
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.18 E-value=0.00034 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999863
No 481
>PRK04195 replication factor C large subunit; Provisional
Probab=97.18 E-value=0.009 Score=49.13 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.-.++|.|++|+||||+++.+....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999987643
No 482
>PRK14531 adenylate kinase; Provisional
Probab=97.18 E-value=0.00039 Score=49.49 Aligned_cols=22 Identities=36% Similarity=0.606 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
.+|+++|+|||||||+...|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988865
No 483
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.18 E-value=0.0019 Score=49.65 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-+|+|.|++||||||++++|...
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 484
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.17 E-value=0.00041 Score=49.48 Aligned_cols=23 Identities=13% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.=|+|+|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999864
No 485
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.17 E-value=0.00034 Score=52.09 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 048059 13 LVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~ 32 (198)
++|+|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999987
No 486
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.16 E-value=0.0004 Score=51.21 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
++|+|+|+|||||||+...|..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999988865
No 487
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.16 E-value=0.00033 Score=50.14 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 488
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.16 E-value=0.00042 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.|.|+|+.|||||||+..|...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 489
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.16 E-value=0.00038 Score=49.39 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 048059 13 LVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~ 32 (198)
|+|+|+|||||||+..+|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998875
No 490
>PRK00625 shikimate kinase; Provisional
Probab=97.16 E-value=0.00042 Score=48.84 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988865
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.15 E-value=0.0015 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.-.++|+|++|||||||++.+.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999999988643
No 492
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.15 E-value=0.00045 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
....|+|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988763
No 493
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.13 E-value=0.00039 Score=51.00 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|+|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999999988763
No 494
>PRK02496 adk adenylate kinase; Provisional
Probab=97.13 E-value=0.0005 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
.+|+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 495
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.11 E-value=0.00039 Score=50.62 Aligned_cols=21 Identities=48% Similarity=0.710 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 496
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0012 Score=52.29 Aligned_cols=114 Identities=23% Similarity=0.220 Sum_probs=60.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh----CCCC------CCCCC-----------CcceeEEEEEEEe------------
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK----GQFY------DQQEP-----------TIGAAFFTQILSL------------ 54 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~----~~~~------~~~~~-----------~~~~~~~~~~~~~------------ 54 (198)
.+...|+++|..||||||.+-.|.. .... ..+.| ..+.+++.....-
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 3457899999999999998776543 1100 00111 1122222211000
Q ss_pred -CCcEEEEEEEeCCCchhhcccc------hhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059 55 -SEATVKFDIWDTAGQERYHSLA------PMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSD 126 (198)
Q Consensus 55 -~~~~~~~~l~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D 126 (198)
....+.+.|+||+|........ -.-.-+.|=++||+|+...+.- +.+..+.+.+ . ---||+||.|
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l----~---itGvIlTKlD 250 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL----G---ITGVILTKLD 250 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc----C---CceEEEEccc
Confidence 0123578899999964332211 1123468899999998655433 3333332221 1 1246668888
Q ss_pred CC
Q 048059 127 LD 128 (198)
Q Consensus 127 l~ 128 (198)
..
T Consensus 251 Gd 252 (451)
T COG0541 251 GD 252 (451)
T ss_pred CC
Confidence 63
No 497
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.09 E-value=0.00053 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 048059 10 QAKLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~ 31 (198)
.-.++|+|+.|+|||||++.++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999876
No 498
>PHA00729 NTP-binding motif containing protein
Probab=97.09 E-value=0.00059 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.+|+|.|+||+|||+|+.++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988753
No 499
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.00047 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-+.|+||.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999998
No 500
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.00045 Score=53.52 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~ 34 (198)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999888743
Done!