Query 048059
Match_columns 198
No_of_seqs 157 out of 1656
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 09:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.1E-46 1.1E-50 271.3 19.5 172 6-177 9-180 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 4.8E-39 1.7E-43 232.2 26.9 191 7-197 5-206 (206)
3 1vg8_A RAS-related protein RAB 100.0 1.2E-37 4.2E-42 224.8 21.3 190 7-197 5-207 (207)
4 2efe_B Small GTP-binding prote 100.0 5.3E-37 1.8E-41 216.9 23.1 175 1-175 3-177 (181)
5 3tkl_A RAS-related protein RAB 100.0 3.2E-36 1.1E-40 215.6 24.8 173 6-178 12-184 (196)
6 3cpj_B GTP-binding protein YPT 100.0 6.5E-37 2.2E-41 223.8 21.1 172 7-178 10-181 (223)
7 2bov_A RAla, RAS-related prote 100.0 1.3E-36 4.4E-41 219.2 22.3 168 6-174 10-178 (206)
8 2a5j_A RAS-related protein RAB 100.0 5E-36 1.7E-40 214.0 23.6 171 6-176 17-187 (191)
9 2ew1_A RAS-related protein RAB 100.0 2E-36 6.9E-41 217.9 21.5 171 7-177 23-193 (201)
10 2hup_A RAS-related protein RAB 100.0 2.6E-36 8.8E-41 217.3 21.7 171 7-177 26-197 (201)
11 1z0f_A RAB14, member RAS oncog 100.0 6.4E-36 2.2E-40 210.8 22.2 169 5-173 10-178 (179)
12 2gf9_A RAS-related protein RAB 100.0 1.3E-35 4.6E-40 211.4 23.7 169 6-174 18-186 (189)
13 2fu5_C RAS-related protein RAB 100.0 1.8E-36 6.2E-41 214.7 18.9 171 7-177 5-175 (183)
14 1r2q_A RAS-related protein RAB 100.0 6.2E-36 2.1E-40 209.1 21.2 166 7-172 3-168 (170)
15 1z08_A RAS-related protein RAB 100.0 5.3E-36 1.8E-40 209.6 20.8 167 7-173 3-169 (170)
16 1z0j_A RAB-22, RAS-related pro 100.0 2.2E-35 7.7E-40 206.4 22.8 166 7-172 3-168 (170)
17 2oil_A CATX-8, RAS-related pro 100.0 1E-35 3.5E-40 212.6 21.4 170 6-175 21-190 (193)
18 3t5g_A GTP-binding protein RHE 100.0 2.6E-35 8.8E-40 208.4 23.0 171 7-178 3-174 (181)
19 2g6b_A RAS-related protein RAB 100.0 3.1E-35 1.1E-39 207.6 23.4 171 5-175 5-176 (180)
20 2bme_A RAB4A, RAS-related prot 100.0 1.7E-35 5.9E-40 210.1 22.2 171 7-177 7-177 (186)
21 2fg5_A RAB-22B, RAS-related pr 100.0 8E-36 2.7E-40 213.2 20.4 169 6-174 19-187 (192)
22 2il1_A RAB12; G-protein, GDP, 100.0 5.1E-36 1.7E-40 214.3 19.3 171 4-174 20-191 (192)
23 3kkq_A RAS-related protein M-R 100.0 3.2E-35 1.1E-39 208.3 23.1 170 4-174 12-183 (183)
24 1ek0_A Protein (GTP-binding pr 100.0 1.1E-35 3.9E-40 207.7 20.5 164 9-172 2-168 (170)
25 1g16_A RAS-related protein SEC 100.0 2.3E-35 7.7E-40 206.3 21.7 166 9-175 2-167 (170)
26 3dz8_A RAS-related protein RAB 100.0 1.5E-36 5.3E-41 216.7 16.0 171 6-176 19-189 (191)
27 1zbd_A Rabphilin-3A; G protein 100.0 5.1E-35 1.7E-39 210.6 23.8 168 7-174 5-172 (203)
28 2gf0_A GTP-binding protein DI- 100.0 4.7E-36 1.6E-40 215.1 18.1 168 7-176 5-174 (199)
29 3tw8_B RAS-related protein RAB 100.0 4.9E-35 1.7E-39 206.6 22.8 172 6-178 5-176 (181)
30 2o52_A RAS-related protein RAB 100.0 2E-35 6.7E-40 212.5 21.0 171 7-177 22-192 (200)
31 2fn4_A P23, RAS-related protei 100.0 3.7E-35 1.3E-39 207.2 22.0 172 6-178 5-177 (181)
32 2hxs_A RAB-26, RAS-related pro 100.0 7.3E-36 2.5E-40 210.5 17.6 170 7-176 3-176 (178)
33 2y8e_A RAB-protein 6, GH09086P 100.0 2.1E-35 7.2E-40 208.1 20.0 167 7-173 11-177 (179)
34 3cbq_A GTP-binding protein REM 100.0 2.3E-35 8E-40 211.4 19.9 171 6-176 19-191 (195)
35 1z2a_A RAS-related protein RAB 100.0 3E-35 1E-39 205.3 19.9 165 8-173 3-167 (168)
36 4dsu_A GTPase KRAS, isoform 2B 100.0 4E-35 1.4E-39 208.5 20.9 169 8-178 2-171 (189)
37 3bc1_A RAS-related protein RAB 100.0 3.6E-35 1.2E-39 209.5 20.7 171 6-176 7-188 (195)
38 3oes_A GTPase rhebl1; small GT 100.0 1.6E-35 5.3E-40 213.1 18.4 170 7-177 21-191 (201)
39 2p5s_A RAS and EF-hand domain 100.0 1.5E-35 5.2E-40 212.9 18.1 168 6-173 24-197 (199)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.5E-34 5E-39 203.7 22.7 168 6-174 3-175 (177)
41 1z06_A RAS-related protein RAB 100.0 5.2E-35 1.8E-39 208.4 20.5 168 6-173 16-188 (189)
42 3q3j_B RHO-related GTP-binding 100.0 3.5E-35 1.2E-39 213.3 19.7 171 6-178 23-208 (214)
43 3c5c_A RAS-like protein 12; GD 100.0 3.2E-35 1.1E-39 209.3 19.0 166 6-173 17-186 (187)
44 3reg_A RHO-like small GTPase; 100.0 2.1E-34 7.2E-39 206.0 22.6 170 6-177 19-192 (194)
45 3ihw_A Centg3; RAS, centaurin, 100.0 2.2E-34 7.4E-39 204.5 22.4 164 6-176 16-183 (184)
46 2j0v_A RAC-like GTP-binding pr 100.0 2.6E-35 8.9E-40 213.5 18.0 171 6-178 5-185 (212)
47 3q85_A GTP-binding protein REM 100.0 1.3E-34 4.3E-39 202.5 20.0 165 10-174 2-168 (169)
48 2nzj_A GTP-binding protein REM 100.0 1.9E-34 6.6E-39 202.6 20.7 168 8-176 2-172 (175)
49 3cph_A RAS-related protein SEC 100.0 4.6E-34 1.6E-38 206.9 22.7 168 7-175 17-184 (213)
50 1ky3_A GTP-binding protein YPT 100.0 1E-34 3.6E-39 205.1 18.6 170 7-176 5-181 (182)
51 1x3s_A RAS-related protein RAB 100.0 7E-34 2.4E-38 203.1 23.0 169 6-175 11-180 (195)
52 1u8z_A RAS-related protein RAL 100.0 2.4E-34 8.1E-39 200.5 20.0 164 9-173 3-167 (168)
53 3clv_A RAB5 protein, putative; 100.0 9.6E-34 3.3E-38 203.7 23.7 166 7-175 4-206 (208)
54 1c1y_A RAS-related protein RAP 100.0 2.6E-34 8.9E-39 200.4 20.0 163 9-172 2-166 (167)
55 2q3h_A RAS homolog gene family 100.0 2.8E-34 9.7E-39 206.4 20.6 170 6-177 16-199 (201)
56 2atx_A Small GTP binding prote 100.0 1.2E-33 4E-38 202.1 23.2 165 7-173 15-193 (194)
57 3q72_A GTP-binding protein RAD 100.0 4.2E-34 1.4E-38 199.3 19.8 163 10-174 2-165 (166)
58 1kao_A RAP2A; GTP-binding prot 100.0 2.9E-34 9.8E-39 200.0 18.8 164 9-173 2-166 (167)
59 2iwr_A Centaurin gamma 1; ANK 100.0 8.3E-34 2.8E-38 200.1 21.3 162 7-175 4-171 (178)
60 2g3y_A GTP-binding protein GEM 100.0 5.1E-34 1.7E-38 206.5 20.3 170 7-176 34-206 (211)
61 2a9k_A RAS-related protein RAL 100.0 4.4E-34 1.5E-38 202.7 19.5 169 6-175 14-183 (187)
62 2f7s_A C25KG, RAS-related prot 100.0 1.4E-34 4.7E-39 210.4 17.2 170 7-176 22-202 (217)
63 2atv_A RERG, RAS-like estrogen 100.0 4.1E-34 1.4E-38 204.9 19.0 168 7-176 25-194 (196)
64 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.1E-33 3.8E-38 200.5 21.0 166 8-175 3-182 (186)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 6.9E-34 2.4E-38 201.8 19.7 165 7-173 4-183 (184)
66 2yc2_C IFT27, small RAB-relate 100.0 1.4E-34 4.7E-39 208.8 16.3 169 8-176 18-195 (208)
67 3con_A GTPase NRAS; structural 100.0 5.9E-33 2E-37 197.8 23.1 170 6-177 17-187 (190)
68 1gwn_A RHO-related GTP-binding 100.0 1.7E-33 5.8E-38 203.2 19.7 165 7-173 25-204 (205)
69 4djt_A GTP-binding nuclear pro 100.0 5.7E-34 1.9E-38 207.3 16.9 173 6-178 7-180 (218)
70 2gco_A H9, RHO-related GTP-bin 100.0 8E-33 2.7E-37 199.0 22.4 164 8-173 23-200 (201)
71 2j1l_A RHO-related GTP-binding 100.0 1.7E-33 5.7E-38 204.5 18.8 167 8-176 32-212 (214)
72 2ce2_X GTPase HRAS; signaling 100.0 1.5E-32 5E-37 191.0 22.1 163 9-173 2-165 (166)
73 2fv8_A H6, RHO-related GTP-bin 100.0 1.3E-32 4.6E-37 198.7 21.9 166 8-175 23-202 (207)
74 2erx_A GTP-binding protein DI- 100.0 2E-33 6.8E-38 196.7 16.9 163 9-172 2-166 (172)
75 3l0i_B RAS-related protein RAB 100.0 5.5E-36 1.9E-40 215.2 3.0 168 7-174 30-197 (199)
76 3t1o_A Gliding protein MGLA; G 100.0 7E-34 2.4E-38 203.4 13.7 170 4-177 8-196 (198)
77 4gzl_A RAS-related C3 botulinu 100.0 3E-33 1E-37 201.7 16.9 164 6-171 26-203 (204)
78 2cjw_A GTP-binding protein GEM 100.0 1.8E-32 6.2E-37 195.9 20.1 169 8-176 4-175 (192)
79 3bwd_D RAC-like GTP-binding pr 100.0 6.1E-34 2.1E-38 201.3 11.7 164 7-172 5-180 (182)
80 3gj0_A GTP-binding nuclear pro 100.0 2.9E-33 9.8E-38 204.1 14.7 169 6-177 11-179 (221)
81 4bas_A ADP-ribosylation factor 100.0 5.5E-33 1.9E-37 199.1 15.2 168 5-178 12-194 (199)
82 2f9l_A RAB11B, member RAS onco 100.0 7E-31 2.4E-35 188.5 23.2 168 8-175 3-170 (199)
83 1upt_A ARL1, ADP-ribosylation 100.0 4.8E-32 1.6E-36 189.7 14.4 161 8-175 5-171 (171)
84 1zd9_A ADP-ribosylation factor 100.0 1.6E-32 5.3E-37 195.5 11.1 161 7-173 19-185 (188)
85 2h57_A ADP-ribosylation factor 100.0 5.3E-31 1.8E-35 187.8 18.6 161 7-173 18-187 (190)
86 1oix_A RAS-related protein RAB 100.0 2.4E-30 8E-35 184.7 21.6 165 7-171 26-190 (191)
87 1f6b_A SAR1; gtpases, N-termin 100.0 2E-31 7E-36 191.3 15.5 156 8-170 23-196 (198)
88 1ksh_A ARF-like protein 2; sma 100.0 1E-30 3.4E-35 185.6 18.8 160 8-174 16-181 (186)
89 1m2o_B GTP-binding protein SAR 100.0 7.3E-31 2.5E-35 187.2 17.9 156 8-170 21-189 (190)
90 1r8s_A ADP-ribosylation factor 100.0 2.5E-32 8.6E-37 189.9 9.9 156 11-173 1-162 (164)
91 2h17_A ADP-ribosylation factor 100.0 2.6E-31 8.7E-36 188.1 14.4 158 6-170 17-180 (181)
92 1zj6_A ADP-ribosylation factor 100.0 5.7E-31 1.9E-35 187.1 15.9 163 8-177 14-182 (187)
93 2b6h_A ADP-ribosylation factor 100.0 6.6E-32 2.2E-36 192.9 9.3 159 8-173 27-191 (192)
94 3th5_A RAS-related C3 botulinu 99.9 1.5E-33 5.2E-38 203.1 0.0 163 7-171 27-203 (204)
95 2wkq_A NPH1-1, RAS-related C3 100.0 7.6E-30 2.6E-34 196.3 20.4 163 9-173 154-330 (332)
96 2zej_A Dardarin, leucine-rich 100.0 1.3E-31 4.5E-36 190.1 9.6 164 10-174 2-179 (184)
97 2x77_A ADP-ribosylation factor 100.0 1.8E-31 6E-36 190.0 9.8 161 8-175 20-186 (189)
98 1fzq_A ADP-ribosylation factor 100.0 1.7E-31 5.6E-36 189.1 9.4 159 8-173 14-178 (181)
99 3llu_A RAS-related GTP-binding 100.0 2.7E-31 9.1E-36 190.3 9.9 161 6-171 16-195 (196)
100 1moz_A ARL1, ADP-ribosylation 100.0 1.4E-30 4.7E-35 184.3 13.1 161 8-175 16-182 (183)
101 3c5h_A Glucocorticoid receptor 100.0 6.5E-31 2.2E-35 195.6 6.4 167 4-172 13-254 (255)
102 2wji_A Ferrous iron transport 100.0 3E-29 1E-33 174.9 12.9 154 9-171 2-163 (165)
103 2fh5_B SR-beta, signal recogni 100.0 2.1E-29 7.1E-34 182.7 12.5 160 7-170 4-213 (214)
104 2lkc_A Translation initiation 100.0 5.1E-28 1.8E-32 170.2 16.3 162 7-177 5-175 (178)
105 2qu8_A Putative nucleolar GTP- 100.0 5.2E-28 1.8E-32 177.1 16.0 165 8-175 27-207 (228)
106 3lvq_E ARF-GAP with SH3 domain 100.0 7.8E-29 2.7E-33 200.4 11.9 164 8-178 320-489 (497)
107 3o47_A ADP-ribosylation factor 100.0 2.1E-29 7.3E-34 193.6 7.8 159 9-174 164-328 (329)
108 3r7w_A Gtpase1, GTP-binding pr 100.0 2.3E-28 7.9E-33 186.3 13.2 160 9-172 2-180 (307)
109 2cxx_A Probable GTP-binding pr 100.0 2.5E-28 8.5E-33 173.5 11.4 158 11-177 2-188 (190)
110 3r7w_B Gtpase2, GTP-binding pr 100.0 2.6E-29 8.8E-34 190.5 6.1 156 12-174 1-175 (331)
111 2wjg_A FEOB, ferrous iron tran 100.0 5.8E-28 2E-32 171.5 11.7 160 7-175 4-171 (188)
112 1svi_A GTP-binding protein YSX 100.0 4.9E-28 1.7E-32 172.8 10.9 159 7-172 20-194 (195)
113 3dpu_A RAB family protein; roc 99.9 7.4E-28 2.5E-32 196.1 9.9 166 6-175 37-210 (535)
114 2gj8_A MNME, tRNA modification 99.9 1.2E-27 3.9E-32 168.0 9.5 154 9-172 3-165 (172)
115 2dyk_A GTP-binding protein; GT 99.9 3.2E-27 1.1E-31 163.4 10.6 150 11-171 2-160 (161)
116 3a1s_A Iron(II) transport prot 99.9 1.5E-26 5.1E-31 172.2 14.3 156 8-172 3-166 (258)
117 3iev_A GTP-binding protein ERA 99.9 2.4E-26 8E-31 175.3 14.5 167 4-174 4-183 (308)
118 3pqc_A Probable GTP-binding pr 99.9 2.8E-26 9.6E-31 163.5 12.6 157 7-173 20-194 (195)
119 3b1v_A Ferrous iron uptake tra 99.9 1.1E-26 3.8E-31 173.9 9.6 153 10-172 3-163 (272)
120 3iby_A Ferrous iron transport 99.9 1.3E-26 4.5E-31 172.2 9.1 151 11-170 2-164 (256)
121 4dhe_A Probable GTP-binding pr 99.9 2.8E-26 9.6E-31 167.1 8.8 166 8-177 27-215 (223)
122 3k53_A Ferrous iron transport 99.9 2E-25 6.9E-30 167.4 13.3 160 9-176 2-169 (271)
123 3i8s_A Ferrous iron transport 99.9 7E-26 2.4E-30 170.0 8.8 155 9-172 2-168 (274)
124 1nrj_B SR-beta, signal recogni 99.9 2.3E-26 8E-31 167.0 5.5 144 7-159 9-170 (218)
125 3gee_A MNME, tRNA modification 99.9 2E-24 6.7E-29 172.8 12.7 156 10-172 233-397 (476)
126 2hjg_A GTP-binding protein ENG 99.9 2E-24 6.7E-29 171.9 12.5 161 9-175 174-351 (436)
127 1wf3_A GTP-binding protein; GT 99.9 5.9E-25 2E-29 166.8 8.9 157 8-173 5-173 (301)
128 4dcu_A GTP-binding protein ENG 99.9 3E-24 1E-28 171.7 12.8 164 8-177 193-373 (456)
129 2e87_A Hypothetical protein PH 99.9 1.5E-23 5.3E-28 162.8 15.1 162 8-174 165-337 (357)
130 3qq5_A Small GTP-binding prote 99.9 1E-24 3.6E-29 171.8 6.0 159 7-174 31-197 (423)
131 1cip_A Protein (guanine nucleo 99.9 8.7E-24 3E-28 163.1 10.1 119 58-176 192-347 (353)
132 1s0u_A EIF-2-gamma, translatio 99.9 2.3E-22 8E-27 158.7 18.2 162 6-173 4-198 (408)
133 3sjy_A Translation initiation 99.9 1.2E-22 4E-27 160.2 16.1 164 6-175 4-194 (403)
134 1lnz_A SPO0B-associated GTP-bi 99.9 7.7E-24 2.6E-28 162.9 9.0 157 12-175 160-332 (342)
135 1xzp_A Probable tRNA modificat 99.9 3.3E-23 1.1E-27 165.9 12.0 153 10-173 243-405 (482)
136 1wb1_A Translation elongation 99.9 2.1E-22 7.1E-27 161.8 15.3 159 6-173 15-189 (482)
137 3lxx_A GTPase IMAP family memb 99.9 7.7E-23 2.6E-27 150.6 11.7 166 6-175 25-216 (239)
138 3ohm_A Guanine nucleotide-bind 99.9 8.9E-23 3E-27 155.5 11.7 121 57-177 165-322 (327)
139 1mky_A Probable GTP-binding pr 99.9 1.5E-22 5.2E-27 161.2 13.3 152 11-174 2-167 (439)
140 2xtp_A GTPase IMAP family memb 99.9 7.1E-23 2.4E-27 152.6 10.7 166 6-175 18-210 (260)
141 2qtf_A Protein HFLX, GTP-bindi 99.9 6.8E-22 2.3E-26 153.4 16.0 165 10-177 178-358 (364)
142 2hjg_A GTP-binding protein ENG 99.9 2.6E-23 8.9E-28 165.5 7.3 155 10-174 3-166 (436)
143 3lxw_A GTPase IMAP family memb 99.9 3E-22 1E-26 148.1 12.5 170 7-176 18-211 (247)
144 3geh_A MNME, tRNA modification 99.9 4.5E-23 1.5E-27 164.4 8.5 155 9-175 223-386 (462)
145 3cb4_D GTP-binding protein LEP 99.9 4.1E-22 1.4E-26 163.0 14.4 159 10-174 4-183 (599)
146 1kk1_A EIF2gamma; initiation o 99.9 1.1E-21 3.8E-26 155.0 15.9 162 6-173 6-200 (410)
147 1ega_A Protein (GTP-binding pr 99.9 1.5E-22 5.3E-27 153.7 10.4 159 8-173 6-175 (301)
148 2xtz_A Guanine nucleotide-bind 99.9 3.2E-22 1.1E-26 154.3 12.3 119 57-175 181-347 (354)
149 2ywe_A GTP-binding protein LEP 99.9 1.8E-21 6.3E-26 158.9 17.4 161 8-174 4-185 (600)
150 3j2k_7 ERF3, eukaryotic polype 99.9 7.8E-22 2.7E-26 156.9 13.7 155 6-165 13-217 (439)
151 3p26_A Elongation factor 1 alp 99.9 3.5E-22 1.2E-26 160.8 11.7 153 8-162 31-227 (483)
152 2qag_A Septin-2, protein NEDD5 99.9 2.6E-23 8.9E-28 161.5 4.4 165 8-177 35-237 (361)
153 3t5d_A Septin-7; GTP-binding p 99.9 7.4E-23 2.5E-27 153.6 6.7 162 7-172 5-203 (274)
154 2ged_A SR-beta, signal recogni 99.9 2.4E-22 8.4E-27 143.0 8.9 117 7-132 45-173 (193)
155 1mky_A Probable GTP-binding pr 99.9 3E-21 1E-25 153.7 15.1 161 9-175 179-357 (439)
156 1azs_C GS-alpha; complex (lyas 99.9 1.8E-21 6.1E-26 151.9 13.1 118 58-175 216-387 (402)
157 4fid_A G protein alpha subunit 99.9 7.2E-22 2.5E-26 151.0 10.1 118 56-173 158-328 (340)
158 1zun_B Sulfate adenylate trans 99.9 1.2E-21 4.3E-26 155.7 11.4 155 7-164 21-215 (434)
159 3izy_P Translation initiation 99.9 2.2E-23 7.5E-28 168.2 1.2 159 10-173 4-168 (537)
160 1jny_A EF-1-alpha, elongation 99.9 5.6E-23 1.9E-27 163.5 3.5 157 8-165 4-205 (435)
161 4dcu_A GTP-binding protein ENG 99.9 2.4E-22 8.3E-27 160.7 6.5 158 6-173 19-185 (456)
162 3tr5_A RF-3, peptide chain rel 99.9 8.5E-22 2.9E-26 159.4 8.9 118 8-129 11-148 (528)
163 1g7s_A Translation initiation 99.9 1.2E-20 4.2E-25 154.4 15.2 161 8-175 3-220 (594)
164 1d2e_A Elongation factor TU (E 99.9 1.5E-21 5.2E-26 153.5 8.9 160 9-172 2-194 (397)
165 2c78_A Elongation factor TU-A; 99.8 4.8E-22 1.7E-26 156.8 5.6 150 6-159 7-180 (405)
166 2elf_A Protein translation elo 99.8 2.3E-21 7.8E-26 150.9 8.3 147 12-174 23-181 (370)
167 3izq_1 HBS1P, elongation facto 99.8 3E-21 1E-25 158.7 6.5 154 8-163 165-362 (611)
168 1r5b_A Eukaryotic peptide chai 99.8 2.5E-21 8.6E-26 155.1 5.6 157 8-164 41-243 (467)
169 1f60_A Elongation factor EEF1A 99.8 4.9E-22 1.7E-26 158.8 1.4 150 7-163 4-202 (458)
170 1pui_A ENGB, probable GTP-bind 99.8 1.6E-20 5.5E-25 135.3 8.9 157 8-173 24-199 (210)
171 1zo1_I IF2, translation initia 99.8 1.1E-21 3.9E-26 157.1 2.5 152 9-169 3-163 (501)
172 2aka_B Dynamin-1; fusion prote 99.8 4.8E-21 1.6E-25 145.3 5.1 161 8-171 24-251 (299)
173 3avx_A Elongation factor TS, e 99.8 1.9E-20 6.5E-25 160.4 8.6 162 7-172 293-485 (1289)
174 3def_A T7I23.11 protein; chlor 99.8 6.2E-19 2.1E-23 131.4 14.5 124 8-134 34-170 (262)
175 2qnr_A Septin-2, protein NEDD5 99.8 1.3E-20 4.3E-25 143.1 3.4 165 7-176 15-217 (301)
176 2dy1_A Elongation factor G; tr 99.8 7.3E-19 2.5E-23 146.1 13.9 117 8-128 7-139 (665)
177 1udx_A The GTP-binding protein 99.8 1.4E-18 4.8E-23 136.6 14.3 161 12-176 159-328 (416)
178 1dar_A EF-G, elongation factor 99.8 6.3E-19 2.1E-23 147.0 12.6 120 6-129 8-143 (691)
179 1zcb_A G alpha I/13; GTP-bindi 99.8 4.2E-19 1.4E-23 137.5 10.4 133 40-176 186-356 (362)
180 3t34_A Dynamin-related protein 99.8 1.4E-19 4.7E-24 140.8 6.9 108 59-168 136-256 (360)
181 3mca_A HBS1, elongation factor 99.8 3.5E-20 1.2E-24 152.0 3.0 152 7-161 174-371 (592)
182 1u0l_A Probable GTPase ENGC; p 99.8 8E-20 2.7E-24 138.7 4.6 134 25-169 32-169 (301)
183 1h65_A Chloroplast outer envel 99.8 1.8E-18 6.3E-23 129.4 11.6 121 9-131 38-170 (270)
184 2j69_A Bacterial dynamin-like 99.8 2.2E-18 7.6E-23 143.8 12.4 162 9-173 68-325 (695)
185 2h5e_A Peptide chain release f 99.8 6.1E-18 2.1E-22 137.0 14.3 118 8-129 11-148 (529)
186 1jwy_B Dynamin A GTPase domain 99.8 2.9E-18 9.8E-23 131.0 11.6 112 59-173 131-262 (315)
187 2rdo_7 EF-G, elongation factor 99.8 1.6E-17 5.5E-22 138.7 16.8 124 1-128 1-147 (704)
188 2xex_A Elongation factor G; GT 99.8 3.4E-18 1.2E-22 142.6 12.6 125 1-129 1-141 (693)
189 2qag_C Septin-7; cell cycle, c 99.8 8.4E-19 2.9E-23 138.0 7.1 162 7-172 28-226 (418)
190 1wxq_A GTP-binding protein; st 99.7 2.4E-18 8.2E-23 134.9 6.7 85 11-95 1-114 (397)
191 2wsm_A Hydrogenase expression/ 99.7 1E-17 3.5E-22 121.6 5.6 155 10-175 30-216 (221)
192 1jal_A YCHF protein; nucleotid 99.7 1.2E-15 4.3E-20 117.6 14.9 144 11-156 3-240 (363)
193 2hf9_A Probable hydrogenase ni 99.7 5.5E-19 1.9E-23 128.8 -4.2 154 9-173 37-224 (226)
194 2x2e_A Dynamin-1; nitration, h 99.7 2.2E-17 7.5E-22 128.0 4.0 158 9-169 30-254 (353)
195 3p32_A Probable GTPase RV1496/ 99.6 3.3E-16 1.1E-20 121.4 7.4 104 58-173 171-284 (355)
196 1n0u_A EF-2, elongation factor 99.6 7.2E-16 2.5E-20 131.1 9.7 117 8-128 17-163 (842)
197 3vqt_A RF-3, peptide chain rel 99.6 2.4E-15 8.2E-20 122.4 11.6 116 9-128 30-165 (548)
198 2www_A Methylmalonic aciduria 99.6 5.4E-16 1.9E-20 119.9 5.2 104 58-173 166-279 (349)
199 1yrb_A ATP(GTP)binding protein 99.6 7E-15 2.4E-19 109.3 10.9 110 59-173 109-257 (262)
200 2qpt_A EH domain-containing pr 99.6 1.4E-15 5E-20 123.8 6.6 117 8-129 63-232 (550)
201 2dby_A GTP-binding protein; GD 99.6 4.9E-15 1.7E-19 114.9 9.0 152 11-164 2-253 (368)
202 2p67_A LAO/AO transport system 99.5 1.1E-14 3.9E-19 112.2 7.4 104 58-172 148-260 (341)
203 4fn5_A EF-G 1, elongation fact 99.5 7.9E-13 2.7E-17 110.9 16.4 124 1-128 4-150 (709)
204 2yv5_A YJEQ protein; hydrolase 99.5 5.1E-14 1.7E-18 106.8 8.2 96 69-167 66-163 (302)
205 4a9a_A Ribosome-interacting GT 99.5 7.1E-13 2.4E-17 102.8 14.3 152 10-165 72-240 (376)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 6.6E-14 2.3E-18 116.8 8.3 159 9-170 50-275 (772)
207 3j25_A Tetracycline resistance 99.5 1.9E-14 6.6E-19 119.2 4.3 114 11-128 3-132 (638)
208 2qm8_A GTPase/ATPase; G protei 99.5 2.7E-13 9.1E-18 104.3 10.3 104 58-172 147-260 (337)
209 3l82_B F-box only protein 4; T 99.4 8.7E-14 3E-18 98.4 3.9 107 66-174 109-224 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.3E-11 7.9E-16 94.9 14.3 85 10-94 20-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 7.2E-13 2.5E-17 103.2 5.8 87 10-96 22-130 (396)
212 3l2o_B F-box only protein 4; s 99.3 1.5E-12 5.3E-17 96.4 6.4 107 66-174 194-309 (312)
213 3h2y_A GTPase family protein; 99.0 8E-10 2.7E-14 85.9 8.9 97 68-171 55-158 (368)
214 2j37_W Signal recognition part 99.0 8.8E-10 3E-14 88.6 9.1 151 9-170 100-310 (504)
215 3ec1_A YQEH GTPase; atnos1, at 99.0 4E-11 1.4E-15 93.2 -0.5 143 10-160 162-318 (369)
216 2qag_B Septin-6, protein NEDD5 99.0 3.5E-09 1.2E-13 83.2 9.5 140 11-155 43-218 (427)
217 3h2y_A GTPase family protein; 98.9 2.7E-11 9.2E-16 94.2 -2.6 137 10-154 160-311 (368)
218 1tq4_A IIGP1, interferon-induc 98.9 5.5E-08 1.9E-12 76.4 14.5 158 10-174 69-254 (413)
219 3ec1_A YQEH GTPase; atnos1, at 98.9 4.1E-09 1.4E-13 82.0 6.6 97 68-171 57-160 (369)
220 3sop_A Neuronal-specific septi 98.8 2.8E-08 9.5E-13 74.0 9.8 25 10-34 2-26 (270)
221 1puj_A YLQF, conserved hypothe 98.8 6.1E-09 2.1E-13 78.1 5.8 101 63-173 3-106 (282)
222 1puj_A YLQF, conserved hypothe 98.6 3.1E-08 1.1E-12 74.2 5.0 58 9-70 119-176 (282)
223 3cnl_A YLQF, putative uncharac 98.6 2.2E-08 7.5E-13 74.2 2.9 57 11-71 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.5 4.7E-07 1.6E-11 71.6 9.8 86 59-154 183-274 (443)
225 1f5n_A Interferon-induced guan 98.4 5.8E-07 2E-11 73.6 6.4 64 8-71 36-103 (592)
226 3cnl_A YLQF, putative uncharac 98.3 2.1E-07 7.3E-12 68.9 2.1 91 66-169 4-97 (262)
227 3kl4_A SRP54, signal recogniti 98.3 1.5E-07 5.2E-12 74.3 1.2 87 58-154 179-273 (433)
228 2v3c_C SRP54, signal recogniti 98.3 3.1E-06 1E-10 67.1 8.5 84 58-152 180-271 (432)
229 1bif_A 6-phosphofructo-2-kinas 98.2 9.5E-08 3.2E-12 76.6 -1.1 102 8-111 37-148 (469)
230 1j8m_F SRP54, signal recogniti 98.2 3.3E-06 1.1E-10 63.7 7.1 91 58-161 180-279 (297)
231 1t9h_A YLOQ, probable GTPase E 98.1 5E-07 1.7E-11 68.3 1.0 91 72-165 76-169 (307)
232 3szr_A Interferon-induced GTP- 98.1 7.2E-06 2.5E-10 67.7 7.6 23 12-34 47-69 (608)
233 3e70_C DPA, signal recognition 98.0 1.5E-05 5E-10 60.9 7.2 89 60-160 213-307 (328)
234 3q5d_A Atlastin-1; G protein, 97.8 3.3E-05 1.1E-09 61.3 6.7 26 8-33 65-90 (447)
235 2rcn_A Probable GTPase ENGC; Y 97.8 4.6E-05 1.6E-09 58.7 6.4 82 79-166 127-212 (358)
236 2xxa_A Signal recognition part 97.7 0.00086 2.9E-08 53.1 12.0 84 58-152 183-273 (433)
237 1ye8_A Protein THEP1, hypothet 97.6 3.1E-05 1.1E-09 53.9 3.3 22 12-33 2-23 (178)
238 1kgd_A CASK, peripheral plasma 97.6 4E-05 1.4E-09 53.3 3.2 23 11-33 6-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.5 5.4E-05 1.8E-09 53.5 3.2 22 11-32 5-26 (198)
240 1zp6_A Hypothetical protein AT 97.5 6.6E-05 2.3E-09 52.4 3.1 23 11-33 10-32 (191)
241 2yv5_A YJEQ protein; hydrolase 97.5 0.0003 1E-08 53.1 6.8 23 11-34 166-188 (302)
242 3tr0_A Guanylate kinase, GMP k 97.4 7.3E-05 2.5E-09 52.8 3.2 23 11-33 8-30 (205)
243 1t9h_A YLOQ, probable GTPase E 97.4 3.7E-05 1.3E-09 58.1 1.6 24 11-34 174-197 (307)
244 3a00_A Guanylate kinase, GMP k 97.4 7.5E-05 2.6E-09 52.2 3.1 21 13-33 4-24 (186)
245 1knq_A Gluconate kinase; ALFA/ 97.4 0.00014 4.7E-09 50.1 4.1 22 11-32 9-30 (175)
246 1znw_A Guanylate kinase, GMP k 97.4 9.1E-05 3.1E-09 52.6 3.1 23 12-34 22-44 (207)
247 1s96_A Guanylate kinase, GMP k 97.4 9.2E-05 3.1E-09 53.2 3.2 25 10-34 16-40 (219)
248 3cwq_A Para family chromosome 97.4 0.00017 5.9E-09 51.3 4.4 86 58-150 67-153 (209)
249 1z6g_A Guanylate kinase; struc 97.4 0.0001 3.4E-09 52.9 3.1 22 12-33 25-46 (218)
250 4gp7_A Metallophosphoesterase; 97.3 8.8E-05 3E-09 51.1 2.5 20 12-31 11-30 (171)
251 3ney_A 55 kDa erythrocyte memb 97.3 0.00012 4.3E-09 51.6 3.3 25 9-33 18-42 (197)
252 3tau_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 52.1 3.2 24 11-34 9-32 (208)
253 3c8u_A Fructokinase; YP_612366 97.3 0.00012 4E-09 52.1 3.0 26 8-33 20-45 (208)
254 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.4E-09 51.1 3.1 21 13-33 4-24 (186)
255 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.9E-09 49.9 3.2 23 11-33 5-27 (173)
256 3asz_A Uridine kinase; cytidin 97.3 0.00016 5.5E-09 51.3 3.4 24 9-32 5-28 (211)
257 4eun_A Thermoresistant glucoki 97.3 0.00015 5E-09 51.2 3.2 23 10-32 29-51 (200)
258 2qor_A Guanylate kinase; phosp 97.3 0.00015 5.1E-09 51.4 3.2 24 10-33 12-35 (204)
259 1htw_A HI0065; nucleotide-bind 97.3 0.00017 5.7E-09 49.1 3.1 23 12-34 35-57 (158)
260 2bdt_A BH3686; alpha-beta prot 97.3 0.00016 5.4E-09 50.5 3.1 21 12-32 4-24 (189)
261 3tif_A Uncharacterized ABC tra 97.3 0.00014 4.9E-09 52.8 2.9 22 12-33 33-54 (235)
262 2j41_A Guanylate kinase; GMP, 97.3 0.00016 5.5E-09 51.0 3.1 24 11-34 7-30 (207)
263 1ly1_A Polynucleotide kinase; 97.3 0.00017 5.9E-09 49.7 3.2 22 11-32 3-24 (181)
264 3lw7_A Adenylate kinase relate 97.2 0.00018 6E-09 49.2 3.1 20 11-30 2-21 (179)
265 3kb2_A SPBC2 prophage-derived 97.2 0.0002 6.8E-09 49.0 3.3 21 12-32 3-23 (173)
266 2pcj_A ABC transporter, lipopr 97.2 0.00017 5.7E-09 52.0 2.9 22 12-33 32-53 (224)
267 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.1E-09 50.9 3.3 22 11-32 1-22 (216)
268 3umf_A Adenylate kinase; rossm 97.2 0.00029 9.9E-09 50.5 4.0 20 13-32 32-51 (217)
269 2onk_A Molybdate/tungstate ABC 97.2 0.0002 7E-09 52.2 3.2 22 12-33 26-47 (240)
270 3sr0_A Adenylate kinase; phosp 97.2 0.00022 7.6E-09 50.7 3.3 22 11-32 1-22 (206)
271 3dl0_A Adenylate kinase; phosp 97.2 0.00022 7.5E-09 50.8 3.3 22 11-32 1-22 (216)
272 2bbw_A Adenylate kinase 4, AK4 97.2 0.00024 8.2E-09 51.8 3.4 21 11-31 28-48 (246)
273 3vaa_A Shikimate kinase, SK; s 97.2 0.00026 9E-09 49.9 3.4 22 11-32 26-47 (199)
274 1qhx_A CPT, protein (chloramph 97.2 0.00025 8.4E-09 48.9 3.2 22 11-32 4-25 (178)
275 3cm0_A Adenylate kinase; ATP-b 97.2 0.00031 1E-08 48.8 3.7 23 10-32 4-26 (186)
276 1sgw_A Putative ABC transporte 97.2 0.00022 7.5E-09 51.0 3.0 22 12-33 37-58 (214)
277 2eyu_A Twitching motility prot 97.2 0.00023 8E-09 52.5 3.2 22 11-32 26-47 (261)
278 3t61_A Gluconokinase; PSI-biol 97.2 0.00024 8.3E-09 50.1 3.1 22 11-32 19-40 (202)
279 3gfo_A Cobalt import ATP-bindi 97.2 0.00022 7.5E-09 53.1 3.0 23 12-34 36-58 (275)
280 1kht_A Adenylate kinase; phosp 97.2 0.00026 9E-09 49.2 3.3 22 11-32 4-25 (192)
281 1b0u_A Histidine permease; ABC 97.2 0.00022 7.6E-09 52.7 3.0 22 12-33 34-55 (262)
282 1y63_A LMAJ004144AAA protein; 97.2 0.00027 9.1E-09 49.2 3.3 25 9-33 9-33 (184)
283 2cbz_A Multidrug resistance-as 97.1 0.00022 7.6E-09 51.9 2.9 22 12-33 33-54 (237)
284 2rcn_A Probable GTPase ENGC; Y 97.1 0.00023 7.8E-09 54.9 3.1 23 12-34 217-239 (358)
285 2if2_A Dephospho-COA kinase; a 97.1 0.00028 9.7E-09 49.8 3.3 22 11-32 2-23 (204)
286 1ukz_A Uridylate kinase; trans 97.1 0.00034 1.2E-08 49.3 3.7 23 10-32 15-37 (203)
287 3ec2_A DNA replication protein 97.1 0.00023 7.9E-09 49.2 2.7 24 10-33 38-61 (180)
288 1g6h_A High-affinity branched- 97.1 0.00024 8.1E-09 52.3 2.9 23 12-34 35-57 (257)
289 4g1u_C Hemin import ATP-bindin 97.1 0.00024 8.3E-09 52.6 2.9 23 12-34 39-61 (266)
290 2i3b_A HCR-ntpase, human cance 97.1 0.0003 1E-08 49.3 3.2 22 12-33 3-24 (189)
291 1mv5_A LMRA, multidrug resista 97.1 0.00026 8.9E-09 51.7 3.0 22 12-33 30-51 (243)
292 2pze_A Cystic fibrosis transme 97.1 0.00027 9.1E-09 51.1 3.0 22 12-33 36-57 (229)
293 3uie_A Adenylyl-sulfate kinase 97.1 0.00029 1E-08 49.6 3.1 24 10-33 25-48 (200)
294 3co5_A Putative two-component 97.1 0.001 3.5E-08 44.2 5.6 22 11-32 28-49 (143)
295 2olj_A Amino acid ABC transpor 97.1 0.00027 9.1E-09 52.2 3.0 22 12-33 52-73 (263)
296 2ff7_A Alpha-hemolysin translo 97.1 0.00026 9E-09 51.8 2.9 22 12-33 37-58 (247)
297 1tev_A UMP-CMP kinase; ploop, 97.1 0.00037 1.3E-08 48.6 3.5 23 10-32 3-25 (196)
298 1ji0_A ABC transporter; ATP bi 97.1 0.00027 9.4E-09 51.5 2.9 22 12-33 34-55 (240)
299 1vpl_A ABC transporter, ATP-bi 97.1 0.00028 9.5E-09 51.9 3.0 22 12-33 43-64 (256)
300 1nks_A Adenylate kinase; therm 97.1 0.00039 1.3E-08 48.4 3.6 21 12-32 3-23 (194)
301 2v9p_A Replication protein E1; 97.1 0.00032 1.1E-08 52.9 3.3 22 11-32 127-148 (305)
302 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00031 1E-08 51.5 3.1 22 12-33 31-52 (250)
303 1jjv_A Dephospho-COA kinase; P 97.1 0.00038 1.3E-08 49.2 3.6 22 11-32 3-24 (206)
304 1cke_A CK, MSSA, protein (cyti 97.1 0.00036 1.2E-08 50.0 3.4 22 11-32 6-27 (227)
305 2cdn_A Adenylate kinase; phosp 97.1 0.00036 1.2E-08 49.2 3.4 26 7-32 17-42 (201)
306 2qi9_C Vitamin B12 import ATP- 97.1 0.00029 1E-08 51.6 3.0 23 12-34 28-50 (249)
307 2jaq_A Deoxyguanosine kinase; 97.1 0.00036 1.2E-08 49.1 3.3 21 12-32 2-22 (205)
308 1e4v_A Adenylate kinase; trans 97.1 0.00035 1.2E-08 49.8 3.3 22 11-32 1-22 (214)
309 3trf_A Shikimate kinase, SK; a 97.1 0.00038 1.3E-08 48.3 3.4 22 11-32 6-27 (185)
310 3b85_A Phosphate starvation-in 97.1 0.00022 7.6E-09 50.8 2.1 22 12-33 24-45 (208)
311 2zu0_C Probable ATP-dependent 97.1 0.00033 1.1E-08 51.9 3.2 22 12-33 48-69 (267)
312 2ghi_A Transport protein; mult 97.1 0.0003 1E-08 51.9 2.9 22 12-33 48-69 (260)
313 2plr_A DTMP kinase, probable t 97.1 0.00041 1.4E-08 49.0 3.5 23 10-32 4-26 (213)
314 3aez_A Pantothenate kinase; tr 97.1 0.00033 1.1E-08 53.1 3.2 26 8-33 88-113 (312)
315 1np6_A Molybdopterin-guanine d 97.0 0.00038 1.3E-08 48.1 3.2 23 11-33 7-29 (174)
316 2rhm_A Putative kinase; P-loop 97.0 0.0004 1.4E-08 48.4 3.4 23 10-32 5-27 (193)
317 2ihy_A ABC transporter, ATP-bi 97.0 0.00033 1.1E-08 52.2 3.0 23 12-34 49-71 (279)
318 2ixe_A Antigen peptide transpo 97.0 0.00032 1.1E-08 52.0 2.9 22 12-33 47-68 (271)
319 4a74_A DNA repair and recombin 97.0 0.00037 1.3E-08 49.9 3.1 22 12-33 27-48 (231)
320 2nq2_C Hypothetical ABC transp 97.0 0.00034 1.2E-08 51.4 2.9 23 12-34 33-55 (253)
321 3tlx_A Adenylate kinase 2; str 97.0 0.00045 1.5E-08 50.3 3.5 24 9-32 28-51 (243)
322 1via_A Shikimate kinase; struc 97.0 0.00036 1.2E-08 48.0 2.8 21 12-32 6-26 (175)
323 3lnc_A Guanylate kinase, GMP k 97.0 0.00022 7.6E-09 51.5 1.8 23 11-33 28-51 (231)
324 1aky_A Adenylate kinase; ATP:A 97.0 0.00042 1.4E-08 49.5 3.2 23 10-32 4-26 (220)
325 2yz2_A Putative ABC transporte 97.0 0.00036 1.2E-08 51.6 2.9 22 12-33 35-56 (266)
326 2ehv_A Hypothetical protein PH 97.0 0.0004 1.4E-08 50.4 3.1 20 12-31 32-51 (251)
327 2wwf_A Thymidilate kinase, put 97.0 0.00056 1.9E-08 48.4 3.7 24 9-32 9-32 (212)
328 1qf9_A UMP/CMP kinase, protein 97.0 0.00078 2.7E-08 46.8 4.4 22 11-32 7-28 (194)
329 1u0l_A Probable GTPase ENGC; p 97.0 0.00048 1.6E-08 51.9 3.3 24 11-34 170-193 (301)
330 3iij_A Coilin-interacting nucl 97.0 0.00044 1.5E-08 47.8 2.9 23 10-32 11-33 (180)
331 2pt5_A Shikimate kinase, SK; a 96.9 0.00057 2E-08 46.5 3.3 21 12-32 2-22 (168)
332 2yvu_A Probable adenylyl-sulfa 96.9 0.0007 2.4E-08 47.0 3.8 25 8-32 11-35 (186)
333 2qt1_A Nicotinamide riboside k 96.9 0.00059 2E-08 48.3 3.5 24 10-33 21-44 (207)
334 2chg_A Replication factor C sm 96.9 0.002 6.9E-08 45.4 6.3 20 13-32 41-60 (226)
335 2pjz_A Hypothetical protein ST 96.9 0.00051 1.7E-08 50.7 3.2 22 12-33 32-53 (263)
336 3jvv_A Twitching mobility prot 96.9 0.00047 1.6E-08 53.2 3.1 21 12-32 125-145 (356)
337 2f1r_A Molybdopterin-guanine d 96.9 0.00026 8.9E-09 48.8 1.5 22 12-33 4-25 (171)
338 1gvn_B Zeta; postsegregational 96.9 0.00047 1.6E-08 51.6 3.0 24 9-32 32-55 (287)
339 2ze6_A Isopentenyl transferase 96.9 0.00051 1.7E-08 50.4 3.2 21 12-32 3-23 (253)
340 2x8a_A Nuclear valosin-contain 96.9 0.00049 1.7E-08 51.1 3.1 21 13-33 47-67 (274)
341 2jeo_A Uridine-cytidine kinase 96.9 0.00058 2E-08 49.8 3.4 23 10-32 25-47 (245)
342 1zd8_A GTP:AMP phosphotransfer 96.9 0.00054 1.9E-08 49.2 3.2 22 11-32 8-29 (227)
343 3be4_A Adenylate kinase; malar 96.9 0.00054 1.8E-08 49.0 3.1 23 10-32 5-27 (217)
344 1lw7_A Transcriptional regulat 96.9 0.00047 1.6E-08 53.4 2.9 24 10-33 170-193 (365)
345 3fvq_A Fe(3+) IONS import ATP- 96.9 0.00054 1.8E-08 52.8 3.1 23 12-34 32-54 (359)
346 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 48.9 3.3 21 12-32 2-22 (223)
347 1ak2_A Adenylate kinase isoenz 96.9 0.00061 2.1E-08 49.2 3.2 23 10-32 16-38 (233)
348 1uf9_A TT1252 protein; P-loop, 96.9 0.00074 2.5E-08 47.4 3.5 24 10-33 8-31 (203)
349 2bbs_A Cystic fibrosis transme 96.9 0.00055 1.9E-08 51.3 2.9 22 12-33 66-87 (290)
350 2kjq_A DNAA-related protein; s 96.9 0.00038 1.3E-08 46.8 1.8 24 11-34 37-60 (149)
351 2v54_A DTMP kinase, thymidylat 96.9 0.00069 2.3E-08 47.6 3.2 24 10-33 4-27 (204)
352 1ixz_A ATP-dependent metallopr 96.9 0.00064 2.2E-08 49.7 3.2 21 13-33 52-72 (254)
353 1z47_A CYSA, putative ABC-tran 96.8 0.00063 2.1E-08 52.4 3.1 23 12-34 43-65 (355)
354 1odf_A YGR205W, hypothetical 3 96.8 0.00089 3E-08 50.2 3.9 25 8-32 29-53 (290)
355 3nh6_A ATP-binding cassette SU 96.8 0.00039 1.3E-08 52.5 2.0 21 12-32 82-102 (306)
356 1nn5_A Similar to deoxythymidy 96.8 0.00068 2.3E-08 48.0 3.1 23 10-32 9-31 (215)
357 2vli_A Antibiotic resistance p 96.8 0.00043 1.5E-08 47.8 2.0 23 10-32 5-27 (183)
358 3tui_C Methionine import ATP-b 96.8 0.00069 2.3E-08 52.3 3.2 23 12-34 56-78 (366)
359 2yyz_A Sugar ABC transporter, 96.8 0.00067 2.3E-08 52.3 3.1 22 12-33 31-52 (359)
360 1jbk_A CLPB protein; beta barr 96.8 0.00084 2.9E-08 46.3 3.4 23 11-33 44-66 (195)
361 1rz3_A Hypothetical protein rb 96.8 0.00076 2.6E-08 47.6 3.2 23 10-32 22-44 (201)
362 2it1_A 362AA long hypothetical 96.8 0.0007 2.4E-08 52.3 3.2 23 12-34 31-53 (362)
363 2c95_A Adenylate kinase 1; tra 96.8 0.00084 2.9E-08 46.8 3.4 22 11-32 10-31 (196)
364 1zak_A Adenylate kinase; ATP:A 96.8 0.00074 2.5E-08 48.3 3.1 22 11-32 6-27 (222)
365 2gza_A Type IV secretion syste 96.8 0.00067 2.3E-08 52.5 3.0 23 11-33 176-198 (361)
366 3rlf_A Maltose/maltodextrin im 96.8 0.00072 2.4E-08 52.5 3.2 23 12-34 31-53 (381)
367 2ewv_A Twitching motility prot 96.8 0.00075 2.6E-08 52.4 3.3 22 11-32 137-158 (372)
368 2bwj_A Adenylate kinase 5; pho 96.8 0.00089 3E-08 46.8 3.4 23 10-32 12-34 (199)
369 1rj9_A FTSY, signal recognitio 96.8 0.00074 2.5E-08 50.9 3.1 23 10-32 102-124 (304)
370 1xjc_A MOBB protein homolog; s 96.8 0.00087 3E-08 46.0 3.2 21 12-32 6-26 (169)
371 2pbr_A DTMP kinase, thymidylat 96.8 0.00088 3E-08 46.6 3.3 21 12-32 2-22 (195)
372 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00064 2.2E-08 51.9 2.7 22 12-33 173-194 (330)
373 1v43_A Sugar-binding transport 96.8 0.00078 2.7E-08 52.2 3.2 22 12-33 39-60 (372)
374 1e6c_A Shikimate kinase; phosp 96.8 0.00087 3E-08 45.8 3.2 21 12-32 4-24 (173)
375 1sq5_A Pantothenate kinase; P- 96.8 0.00099 3.4E-08 50.3 3.7 24 9-32 79-102 (308)
376 1g29_1 MALK, maltose transport 96.8 0.00076 2.6E-08 52.3 3.1 23 12-34 31-53 (372)
377 2p5t_B PEZT; postsegregational 96.8 0.00053 1.8E-08 50.3 2.1 25 8-32 30-54 (253)
378 3b9q_A Chloroplast SRP recepto 96.8 0.00081 2.8E-08 50.7 3.2 23 10-32 100-122 (302)
379 2grj_A Dephospho-COA kinase; T 96.8 0.0011 3.9E-08 46.5 3.7 27 6-32 8-34 (192)
380 1p9r_A General secretion pathw 96.8 0.00076 2.6E-08 53.2 3.1 22 12-33 169-190 (418)
381 3tqc_A Pantothenate kinase; bi 96.8 0.001 3.5E-08 50.5 3.7 25 8-32 90-114 (321)
382 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00084 2.9E-08 49.4 3.1 22 11-32 5-26 (260)
383 2iyv_A Shikimate kinase, SK; t 96.8 0.0009 3.1E-08 46.3 3.1 21 12-32 4-24 (184)
384 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.6E-08 45.3 3.4 22 11-32 8-29 (168)
385 2z0h_A DTMP kinase, thymidylat 96.7 0.00091 3.1E-08 46.7 3.1 21 12-32 2-22 (197)
386 1gtv_A TMK, thymidylate kinase 96.7 0.00034 1.2E-08 49.6 0.9 21 12-32 2-22 (214)
387 2pez_A Bifunctional 3'-phospho 96.7 0.0011 3.8E-08 45.7 3.5 23 10-32 5-27 (179)
388 4e22_A Cytidylate kinase; P-lo 96.7 0.001 3.4E-08 48.8 3.4 22 10-31 27-48 (252)
389 1iy2_A ATP-dependent metallopr 96.7 0.00095 3.3E-08 49.5 3.2 22 12-33 75-96 (278)
390 2oap_1 GSPE-2, type II secreti 96.7 0.00087 3E-08 54.2 3.1 24 11-34 261-284 (511)
391 1in4_A RUVB, holliday junction 96.7 0.00091 3.1E-08 51.1 3.1 22 12-33 53-74 (334)
392 3d31_A Sulfate/molybdate ABC t 96.7 0.00063 2.2E-08 52.3 2.0 23 12-34 28-50 (348)
393 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0011 3.6E-08 47.5 3.1 21 12-32 25-45 (235)
394 3foz_A TRNA delta(2)-isopenten 96.7 0.0013 4.3E-08 49.6 3.6 23 10-32 10-32 (316)
395 3kta_A Chromosome segregation 96.7 0.0011 3.9E-08 45.7 3.2 21 12-32 28-48 (182)
396 1uj2_A Uridine-cytidine kinase 96.7 0.0013 4.4E-08 48.1 3.5 24 9-32 21-44 (252)
397 3gd7_A Fusion complex of cysti 96.6 0.0011 3.6E-08 51.8 3.1 22 12-33 49-70 (390)
398 3r20_A Cytidylate kinase; stru 96.6 0.0013 4.4E-08 47.6 3.3 24 9-32 8-31 (233)
399 1vht_A Dephospho-COA kinase; s 96.6 0.0015 5.2E-08 46.5 3.6 23 10-32 4-26 (218)
400 1lv7_A FTSH; alpha/beta domain 96.6 0.0014 4.8E-08 47.9 3.4 23 11-33 46-68 (257)
401 1zcb_A G alpha I/13; GTP-bindi 96.6 0.0013 4.4E-08 50.9 3.3 24 8-31 31-54 (362)
402 2f6r_A COA synthase, bifunctio 96.6 0.0015 5.1E-08 48.7 3.5 23 9-31 74-96 (281)
403 1cr0_A DNA primase/helicase; R 96.6 0.0012 4.2E-08 49.3 3.1 22 12-33 37-58 (296)
404 2p65_A Hypothetical protein PF 96.6 0.001 3.5E-08 45.7 2.5 24 10-33 43-66 (187)
405 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0046 1.6E-07 49.0 6.3 24 8-31 65-88 (457)
406 3bos_A Putative DNA replicatio 96.6 0.0015 5.2E-08 46.9 3.4 23 10-32 52-74 (242)
407 2w58_A DNAI, primosome compone 96.6 0.0016 5.4E-08 45.8 3.4 23 11-33 55-77 (202)
408 2og2_A Putative signal recogni 96.6 0.0013 4.6E-08 50.7 3.2 23 10-32 157-179 (359)
409 1oxx_K GLCV, glucose, ABC tran 96.6 0.00063 2.2E-08 52.4 1.3 23 12-34 33-55 (353)
410 1m7g_A Adenylylsulfate kinase; 96.5 0.0015 5.1E-08 46.4 3.1 23 10-32 25-47 (211)
411 3nwj_A ATSK2; P loop, shikimat 96.5 0.0013 4.3E-08 48.2 2.8 22 11-32 49-70 (250)
412 2cvh_A DNA repair and recombin 96.5 0.0016 5.4E-08 46.3 3.1 21 12-32 22-42 (220)
413 3gmt_A Adenylate kinase; ssgci 96.5 0.0017 6E-08 46.8 3.3 27 6-32 4-30 (230)
414 2vp4_A Deoxynucleoside kinase; 96.5 0.0014 4.7E-08 47.3 2.8 26 8-33 18-43 (230)
415 1n0w_A DNA repair protein RAD5 96.5 0.0016 5.6E-08 46.9 3.2 22 12-33 26-47 (243)
416 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0015 5.1E-08 52.2 3.1 23 11-33 139-161 (460)
417 3pfi_A Holliday junction ATP-d 96.5 0.0075 2.6E-07 45.8 7.0 23 11-33 56-78 (338)
418 2yhs_A FTSY, cell division pro 96.5 0.0016 5.3E-08 52.3 3.2 23 10-32 293-315 (503)
419 1ltq_A Polynucleotide kinase; 96.5 0.0016 5.5E-08 48.7 3.1 22 11-32 3-24 (301)
420 4eaq_A DTMP kinase, thymidylat 96.5 0.0022 7.6E-08 46.2 3.7 25 9-33 25-49 (229)
421 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0019 6.5E-08 43.3 3.1 19 13-31 26-44 (149)
422 2obl_A ESCN; ATPase, hydrolase 96.5 0.0018 6.3E-08 49.7 3.4 24 11-34 72-95 (347)
423 1svm_A Large T antigen; AAA+ f 96.4 0.0019 6.5E-08 50.2 3.1 22 11-32 170-191 (377)
424 1nij_A Hypothetical protein YJ 96.4 0.0014 4.7E-08 49.8 2.3 23 12-34 6-28 (318)
425 3n70_A Transport activator; si 96.4 0.0023 7.9E-08 42.6 3.1 24 10-33 24-47 (145)
426 1tue_A Replication protein E1; 96.3 0.0019 6.4E-08 45.8 2.5 21 12-32 60-80 (212)
427 3h4m_A Proteasome-activating n 96.3 0.0025 8.4E-08 47.3 3.3 24 10-33 51-74 (285)
428 3uc9_A Increased recombination 96.3 0.0039 1.3E-07 44.8 4.1 24 10-33 29-52 (233)
429 3crm_A TRNA delta(2)-isopenten 96.3 0.0034 1.2E-07 47.6 4.0 22 11-32 6-27 (323)
430 3t15_A Ribulose bisphosphate c 96.3 0.0024 8E-08 47.9 3.1 24 10-33 36-59 (293)
431 3b9p_A CG5977-PA, isoform A; A 96.3 0.0025 8.5E-08 47.6 3.3 23 10-32 54-76 (297)
432 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0028 9.5E-08 46.3 3.4 23 10-32 39-61 (262)
433 3syl_A Protein CBBX; photosynt 96.3 0.0029 9.8E-08 47.5 3.6 24 9-32 66-89 (309)
434 1njg_A DNA polymerase III subu 96.3 0.0026 8.7E-08 45.5 3.1 21 12-32 47-67 (250)
435 3euj_A Chromosome partition pr 96.3 0.0024 8.3E-08 51.1 3.2 21 12-32 31-51 (483)
436 3d3q_A TRNA delta(2)-isopenten 96.3 0.0033 1.1E-07 48.0 3.8 22 11-32 8-29 (340)
437 2dpy_A FLII, flagellum-specifi 96.3 0.0028 9.4E-08 50.3 3.4 23 12-34 159-181 (438)
438 3cf0_A Transitional endoplasmi 96.3 0.0025 8.7E-08 47.8 3.1 24 10-33 49-72 (301)
439 1nlf_A Regulatory protein REPA 96.3 0.0026 9E-08 47.1 3.1 21 12-32 32-52 (279)
440 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0037 1.3E-07 50.9 4.1 23 12-34 49-71 (538)
441 1q3t_A Cytidylate kinase; nucl 96.2 0.0031 1.1E-07 45.6 3.2 24 9-32 15-38 (236)
442 3b60_A Lipid A export ATP-bind 96.2 0.0027 9.3E-08 52.2 3.2 22 12-33 371-392 (582)
443 3ake_A Cytidylate kinase; CMP 96.2 0.0036 1.2E-07 44.0 3.4 21 12-32 4-24 (208)
444 3ozx_A RNAse L inhibitor; ATP 96.2 0.0035 1.2E-07 51.0 3.7 23 12-34 27-49 (538)
445 1l8q_A Chromosomal replication 96.2 0.003 1E-07 47.8 3.1 22 11-32 38-59 (324)
446 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.0031 1E-07 48.8 3.1 19 13-31 26-44 (365)
447 2qmh_A HPR kinase/phosphorylas 96.2 0.0031 1E-07 44.4 2.8 25 10-34 34-58 (205)
448 4fcw_A Chaperone protein CLPB; 96.1 0.0041 1.4E-07 46.6 3.8 24 10-33 47-70 (311)
449 3j16_B RLI1P; ribosome recycli 96.1 0.0039 1.3E-07 51.5 3.9 23 12-34 105-127 (608)
450 1d2n_A N-ethylmaleimide-sensit 96.1 0.0045 1.5E-07 45.6 3.9 25 9-33 63-87 (272)
451 3zvl_A Bifunctional polynucleo 96.1 0.0042 1.4E-07 48.9 3.7 23 10-32 258-280 (416)
452 3b5x_A Lipid A export ATP-bind 96.1 0.0043 1.5E-07 51.0 3.9 22 12-33 371-392 (582)
453 2px0_A Flagellar biosynthesis 96.1 0.0035 1.2E-07 47.1 3.1 86 58-153 182-273 (296)
454 1c9k_A COBU, adenosylcobinamid 96.1 0.0039 1.3E-07 43.2 3.1 21 13-33 2-22 (180)
455 2dr3_A UPF0273 protein PH0284; 96.1 0.0038 1.3E-07 45.0 3.1 21 12-32 25-45 (247)
456 3a8t_A Adenylate isopentenyltr 96.0 0.0042 1.4E-07 47.4 3.3 22 12-33 42-63 (339)
457 1ofh_A ATP-dependent HSL prote 96.0 0.0041 1.4E-07 46.5 3.2 23 10-32 50-72 (310)
458 4b4t_K 26S protease regulatory 96.0 0.0039 1.3E-07 49.2 3.2 24 10-33 206-229 (428)
459 2qby_A CDC6 homolog 1, cell di 96.0 0.0039 1.3E-07 48.0 3.2 23 10-32 45-67 (386)
460 3bk7_A ABC transporter ATP-bin 96.0 0.0046 1.6E-07 51.1 3.7 23 12-34 119-141 (607)
461 4b4t_M 26S protease regulatory 96.0 0.0045 1.5E-07 48.9 3.4 24 10-33 215-238 (434)
462 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0045 1.5E-07 47.0 3.3 24 10-33 45-68 (322)
463 3bk7_A ABC transporter ATP-bin 96.0 0.0052 1.8E-07 50.8 3.8 23 12-34 384-406 (607)
464 1sxj_E Activator 1 40 kDa subu 96.0 0.0034 1.2E-07 48.0 2.6 20 13-32 39-58 (354)
465 3ozx_A RNAse L inhibitor; ATP 96.0 0.0049 1.7E-07 50.2 3.6 23 12-34 296-318 (538)
466 1vma_A Cell division protein F 96.0 0.0045 1.5E-07 46.7 3.2 86 59-154 187-284 (306)
467 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0055 1.9E-07 47.1 3.6 23 10-32 24-46 (359)
468 3exa_A TRNA delta(2)-isopenten 96.0 0.0057 1.9E-07 46.2 3.6 23 11-33 4-26 (322)
469 3eie_A Vacuolar protein sortin 95.9 0.0048 1.6E-07 46.8 3.3 24 10-33 51-74 (322)
470 2qgz_A Helicase loader, putati 95.9 0.005 1.7E-07 46.5 3.4 23 10-32 152-174 (308)
471 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0061 2.1E-07 49.6 4.1 23 12-34 314-336 (538)
472 4b4t_L 26S protease subunit RP 95.9 0.0046 1.6E-07 48.9 3.2 24 10-33 215-238 (437)
473 1sxj_C Activator 1 40 kDa subu 95.9 0.0045 1.6E-07 47.2 3.1 21 13-33 49-69 (340)
474 2h92_A Cytidylate kinase; ross 95.9 0.0042 1.4E-07 44.1 2.7 23 10-32 3-25 (219)
475 1pzn_A RAD51, DNA repair and r 95.9 0.0047 1.6E-07 47.5 3.1 23 11-33 132-154 (349)
476 1fnn_A CDC6P, cell division co 95.9 0.0052 1.8E-07 47.4 3.4 22 12-33 46-67 (389)
477 2yl4_A ATP-binding cassette SU 95.9 0.0028 9.7E-08 52.2 2.0 22 12-33 372-393 (595)
478 3qf4_B Uncharacterized ABC tra 95.9 0.0031 1.1E-07 52.0 2.2 22 12-33 383-404 (598)
479 3ld9_A DTMP kinase, thymidylat 95.9 0.0064 2.2E-07 43.7 3.5 27 6-32 17-43 (223)
480 3j16_B RLI1P; ribosome recycli 95.9 0.0048 1.6E-07 51.0 3.2 22 13-34 381-402 (608)
481 3qks_A DNA double-strand break 95.8 0.0057 2E-07 43.2 3.1 19 13-31 26-44 (203)
482 4b4t_J 26S protease regulatory 95.8 0.0052 1.8E-07 48.0 3.1 24 10-33 182-205 (405)
483 4a82_A Cystic fibrosis transme 95.8 0.0027 9.2E-08 52.2 1.6 21 12-32 369-389 (578)
484 1p5z_B DCK, deoxycytidine kina 95.8 0.0035 1.2E-07 46.1 1.9 24 9-32 23-46 (263)
485 3uk6_A RUVB-like 2; hexameric 95.8 0.0061 2.1E-07 46.8 3.4 23 11-33 71-93 (368)
486 3qf4_A ABC transporter, ATP-bi 95.8 0.0036 1.2E-07 51.5 2.1 21 12-32 371-391 (587)
487 1sxj_D Activator 1 41 kDa subu 95.7 0.006 2.1E-07 46.5 3.1 21 13-33 61-81 (353)
488 2r62_A Cell division protease 95.7 0.0025 8.4E-08 46.9 0.9 21 12-32 46-66 (268)
489 4edh_A DTMP kinase, thymidylat 95.7 0.008 2.7E-07 42.8 3.5 25 8-32 4-28 (213)
490 3cr8_A Sulfate adenylyltranfer 95.7 0.0041 1.4E-07 50.7 2.2 25 9-33 368-392 (552)
491 3tqf_A HPR(Ser) kinase; transf 95.7 0.0087 3E-07 41.1 3.4 24 10-33 16-39 (181)
492 3pxg_A Negative regulator of g 95.7 0.0057 2E-07 48.9 2.9 24 10-33 201-224 (468)
493 2v1u_A Cell division control p 95.7 0.0054 1.9E-07 47.2 2.7 23 10-32 44-66 (387)
494 2qp9_X Vacuolar protein sortin 95.7 0.0065 2.2E-07 46.8 3.1 23 11-33 85-107 (355)
495 4dzz_A Plasmid partitioning pr 95.7 0.017 5.9E-07 40.3 5.1 85 59-150 76-162 (206)
496 2dhr_A FTSH; AAA+ protein, hex 95.7 0.0063 2.2E-07 49.0 3.1 22 12-33 66-87 (499)
497 2ocp_A DGK, deoxyguanosine kin 95.7 0.0084 2.9E-07 43.4 3.5 22 11-32 3-24 (241)
498 3m6a_A ATP-dependent protease 95.6 0.0064 2.2E-07 49.6 3.1 22 11-32 109-130 (543)
499 3d8b_A Fidgetin-like protein 1 95.6 0.0079 2.7E-07 46.3 3.4 23 10-32 117-139 (357)
500 2ce7_A Cell division protein F 95.6 0.0071 2.4E-07 48.4 3.2 21 12-32 51-71 (476)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.1e-46 Score=271.26 Aligned_cols=172 Identities=40% Similarity=0.689 Sum_probs=147.2
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
++.+.+||+|+|++|||||||+++|+.+.+...+.+|++.++..+.+..++..+.+.||||+|+++|..+++.+++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 34667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+++|||++++++|+.+..|+..+......+.|++|||||+|+...+.+..++++.+++.++++|+++||++|.||+++|+
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887778899999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 048059 166 EIAKRLARVSPP 177 (198)
Q Consensus 166 ~l~~~~~~~~~~ 177 (198)
.|++.+......
T Consensus 169 ~i~~~i~~~~~~ 180 (216)
T 4dkx_A 169 RVAAALPGMEST 180 (216)
T ss_dssp HHHHHC------
T ss_pred HHHHHHHhhhcc
Confidence 999988755443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=4.8e-39 Score=232.23 Aligned_cols=191 Identities=33% Similarity=0.608 Sum_probs=160.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45679999999999999999999999998888889999888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 164 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877678999999999999887888888999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC----------C-CCCCCCCCCCCCCCCCcC
Q 048059 167 IAKRLARVSPPK----------R-SGINLNPETPERKGFCCL 197 (198)
Q Consensus 167 l~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~cc~ 197 (198)
|.+.+.+..... . ....+.+..++++.+|||
T Consensus 165 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 206 (206)
T 2bcg_Y 165 MARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206 (206)
T ss_dssp HHHHHHHHCCHHHHHTTSGGGCCCSCCCTTCC----------
T ss_pred HHHHHHHHHhhcccccccccCCCccceeccccccccCCCCCC
Confidence 999988765432 1 222333222246668997
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.2e-37 Score=224.78 Aligned_cols=190 Identities=34% Similarity=0.569 Sum_probs=151.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45679999999999999999999999988888888988888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~ 161 (198)
|+|||++++.+++.+..|+..+..... ...|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988876542 468999999999997 55667788888887 678899999999999999
Q ss_pred HHHHHHHHHHHhhCCCC------CCCCCCCC-C-CCCCCCCCcC
Q 048059 162 ELFYEIAKRLARVSPPK------RSGINLNP-E-TPERKGFCCL 197 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~~~------~~~~~~~~-~-~~~~~~~cc~ 197 (198)
++|++|.+.+.+..... ...+.+.+ + ..+++.+|||
T Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 164 QAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred HHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 99999999887755321 22233333 2 2257788887
No 4
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=5.3e-37 Score=216.93 Aligned_cols=175 Identities=66% Similarity=1.035 Sum_probs=154.3
Q ss_pred CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhh
Q 048059 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYY 80 (198)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 80 (198)
|+.+......+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++
T Consensus 3 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 82 (181)
T 2efe_B 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYY 82 (181)
T ss_dssp -------CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHH
T ss_pred ccCCCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHh
Confidence 66777788899999999999999999999999988888888888888888888888889999999999999999999999
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
+++|++|+|||++++.+++.+..|+..+.....++.|+++|+||+|+...+.+..+++..++...+++++++||++|.|+
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 83 RGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 99999999999999999999999999998877678999999999999877888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q 048059 161 NELFYEIAKRLARVS 175 (198)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (198)
+++|++|.+.+.+..
T Consensus 163 ~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 163 KEIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998776544
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=215.58 Aligned_cols=173 Identities=35% Similarity=0.620 Sum_probs=159.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 34567999999999999999999999999888888999988888888889888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 048059 166 EIAKRLARVSPPK 178 (198)
Q Consensus 166 ~l~~~~~~~~~~~ 178 (198)
+|.+.+.++..+.
T Consensus 172 ~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 172 TMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhccc
Confidence 9999999887765
No 6
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-37 Score=223.77 Aligned_cols=172 Identities=40% Similarity=0.668 Sum_probs=147.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 35679999999999999999999999988878888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+........|++||+||+|+...+.+..+++..++...+++++++||+++.|++++|++
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 169 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEE 169 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678899999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q 048059 167 IAKRLARVSPPK 178 (198)
Q Consensus 167 l~~~~~~~~~~~ 178 (198)
|.+.+.+....+
T Consensus 170 l~~~i~~~~~~~ 181 (223)
T 3cpj_B 170 LINTIYQKVSKH 181 (223)
T ss_dssp HHHHHTTCC---
T ss_pred HHHHHHHHhhhc
Confidence 999988765543
No 7
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=219.20 Aligned_cols=168 Identities=30% Similarity=0.577 Sum_probs=149.9
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 345579999999999999999999999888777777777665 4556678888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+++|||++++++++.+..|+..+..... ...|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887643 578999999999998777888899999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 048059 165 YEIAKRLARV 174 (198)
Q Consensus 165 ~~l~~~~~~~ 174 (198)
++|++.+.+.
T Consensus 169 ~~l~~~i~~~ 178 (206)
T 2bov_A 169 FDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988775
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=5e-36 Score=214.04 Aligned_cols=171 Identities=40% Similarity=0.689 Sum_probs=152.9
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 45668999999999999999999999988887778888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 048059 166 EIAKRLARVSP 176 (198)
Q Consensus 166 ~l~~~~~~~~~ 176 (198)
+|.+.+.++..
T Consensus 177 ~l~~~i~~~~~ 187 (191)
T 2a5j_A 177 NTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-36 Score=217.88 Aligned_cols=171 Identities=38% Similarity=0.656 Sum_probs=156.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999988888889999888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 182 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLD 182 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998877678899999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 048059 167 IAKRLARVSPP 177 (198)
Q Consensus 167 l~~~~~~~~~~ 177 (198)
|.+.+.+....
T Consensus 183 l~~~i~~~~~~ 193 (201)
T 2ew1_A 183 LACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999876543
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=217.32 Aligned_cols=171 Identities=36% Similarity=0.573 Sum_probs=148.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35579999999999999999999999888777888888888788888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNINELFY 165 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 165 (198)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..+++ +++++||++|.|++++|+
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999999887767899999999999987778888999999999999 999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 048059 166 EIAKRLARVSPP 177 (198)
Q Consensus 166 ~l~~~~~~~~~~ 177 (198)
+|.+.+.+....
T Consensus 186 ~l~~~i~~~~~~ 197 (201)
T 2hup_A 186 RVATELIMRHGG 197 (201)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhccc
Confidence 999999876653
No 11
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=6.4e-36 Score=210.79 Aligned_cols=169 Identities=40% Similarity=0.689 Sum_probs=154.5
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAA 84 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 84 (198)
......+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++++|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34566899999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++.+++..++++++++||++|.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988776789999999999998777888889999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 048059 165 YEIAKRLAR 173 (198)
Q Consensus 165 ~~l~~~~~~ 173 (198)
++|.+.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999998754
No 12
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.3e-35 Score=211.43 Aligned_cols=169 Identities=30% Similarity=0.564 Sum_probs=155.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+...+..++.++|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 34567999999999999999999999998887888888888877888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887667889999999999987778888899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048059 166 EIAKRLARV 174 (198)
Q Consensus 166 ~l~~~~~~~ 174 (198)
+|.+.+.+.
T Consensus 178 ~l~~~i~~~ 186 (189)
T 2gf9_A 178 RLVDVICEK 186 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 13
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.8e-36 Score=214.69 Aligned_cols=171 Identities=33% Similarity=0.603 Sum_probs=127.2
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 35679999999999999999999998887777778888888777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999877888889999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 048059 167 IAKRLARVSPP 177 (198)
Q Consensus 167 l~~~~~~~~~~ 177 (198)
|.+.+.+...+
T Consensus 165 l~~~i~~~~~~ 175 (183)
T 2fu5_C 165 LARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99988876543
No 14
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=6.2e-36 Score=209.08 Aligned_cols=166 Identities=59% Similarity=0.942 Sum_probs=152.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
+...+||+++|++|||||||+++|+++.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++.++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 46789999999999999999999999888887888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+.....+..|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999777778888999999999999999999999999999999
Q ss_pred HHHHHH
Q 048059 167 IAKRLA 172 (198)
Q Consensus 167 l~~~~~ 172 (198)
|.+.+.
T Consensus 163 i~~~~~ 168 (170)
T 1r2q_A 163 IAKKLP 168 (170)
T ss_dssp HHHTSC
T ss_pred HHHHHh
Confidence 987653
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=5.3e-36 Score=209.64 Aligned_cols=167 Identities=39% Similarity=0.705 Sum_probs=146.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 45679999999999999999999999988888888988888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
++|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++..+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999887765567899999999999877788889999999999999999999999999999999
Q ss_pred HHHHHHh
Q 048059 167 IAKRLAR 173 (198)
Q Consensus 167 l~~~~~~ 173 (198)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998864
No 16
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.2e-35 Score=206.36 Aligned_cols=166 Identities=45% Similarity=0.774 Sum_probs=153.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+++|++|||||||+++|++..+...+.++.+.++....+.+.+....+.+|||||.+.+...+..++.++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999988888889999888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+.....+..|+++|+||+|+...+++..++...++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877788999999999999877788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 048059 167 IAKRLA 172 (198)
Q Consensus 167 l~~~~~ 172 (198)
|.+.+.
T Consensus 163 i~~~i~ 168 (170)
T 1z0j_A 163 ISRRIP 168 (170)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 988764
No 17
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=212.64 Aligned_cols=170 Identities=38% Similarity=0.657 Sum_probs=155.6
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 100 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG 100 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999999998887888888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+
T Consensus 101 vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 101 ALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877667889999999999987777888899999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 048059 166 EIAKRLARVS 175 (198)
Q Consensus 166 ~l~~~~~~~~ 175 (198)
+|.+.+.+..
T Consensus 181 ~l~~~i~~~~ 190 (193)
T 2oil_A 181 TVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887754
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.6e-35 Score=208.41 Aligned_cols=171 Identities=26% Similarity=0.457 Sum_probs=152.1
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 45689999999999999999999999888888888888777 66777888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
++|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999988876533 5789999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 048059 166 EIAKRLARVSPPK 178 (198)
Q Consensus 166 ~l~~~~~~~~~~~ 178 (198)
+|++.+.+.....
T Consensus 162 ~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 162 RIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHTC----
T ss_pred HHHHHHHHhcCCc
Confidence 9999998876543
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-35 Score=207.63 Aligned_cols=171 Identities=37% Similarity=0.614 Sum_probs=146.2
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA 83 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 83 (198)
...+..+||+|+|++|||||||+++|++..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 34566899999999999999999999998875 45678888888777778888889999999999999999999999999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
|++|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++.++++++++||+++.|++++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876678899999999999887888888999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 048059 164 FYEIAKRLARVS 175 (198)
Q Consensus 164 ~~~l~~~~~~~~ 175 (198)
|++|.+.+.+..
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887544
No 20
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.7e-35 Score=210.08 Aligned_cols=171 Identities=39% Similarity=0.650 Sum_probs=156.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999888876678999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 048059 167 IAKRLARVSPP 177 (198)
Q Consensus 167 l~~~~~~~~~~ 177 (198)
|.+.+.+....
T Consensus 167 l~~~~~~~~~~ 177 (186)
T 2bme_A 167 CARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhhh
Confidence 99999876543
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8e-36 Score=213.21 Aligned_cols=169 Identities=48% Similarity=0.801 Sum_probs=153.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 34668999999999999999999999998887888999998888888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..+++.++++++++||++|.|++++|+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887767899999999999977677888999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 048059 166 EIAKRLARV 174 (198)
Q Consensus 166 ~l~~~~~~~ 174 (198)
+|.+.+.+.
T Consensus 179 ~l~~~i~~~ 187 (192)
T 2fg5_A 179 GISRQIPPL 187 (192)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999876543
No 22
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=214.27 Aligned_cols=171 Identities=32% Similarity=0.624 Sum_probs=147.9
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA 83 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 83 (198)
|.+....+||+|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34556789999999999999999999999888777888888888888888888889999999999999999999999999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINE 162 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~ 162 (198)
|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++... +++++++||++|.|+++
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 179 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999988877678999999999999877788888889999874 88999999999999999
Q ss_pred HHHHHHHHHHhh
Q 048059 163 LFYEIAKRLARV 174 (198)
Q Consensus 163 ~~~~l~~~~~~~ 174 (198)
+|++|.+.+.++
T Consensus 180 l~~~l~~~i~~~ 191 (192)
T 2il1_A 180 IFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 23
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.2e-35 Score=208.29 Aligned_cols=170 Identities=29% Similarity=0.531 Sum_probs=153.0
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA 83 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 83 (198)
+......+||+|+|++|||||||+++|++..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++++
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34566789999999999999999999999888888888888776 66777888889999999999999999999999999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC-CCCCHH
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK-TAQNIN 161 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~ 161 (198)
|++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..++++++++||+ ++.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 9999999999999999999999888663 44678999999999998888899999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhh
Q 048059 162 ELFYEIAKRLARV 174 (198)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (198)
++|++|.+.+.++
T Consensus 171 ~l~~~l~~~i~~q 183 (183)
T 3kkq_A 171 KTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988753
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-35 Score=207.75 Aligned_cols=164 Identities=49% Similarity=0.843 Sum_probs=150.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
+.+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46999999999999999999999998888888999988888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC---CCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ---REVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
|||++++.+++.+..|+..+......+.|+++|+||+|+... +.+..++...++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999998877678999999999998654 67788889999999999999999999999999999
Q ss_pred HHHHHHH
Q 048059 166 EIAKRLA 172 (198)
Q Consensus 166 ~l~~~~~ 172 (198)
+|.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9987653
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.3e-35 Score=206.35 Aligned_cols=166 Identities=36% Similarity=0.665 Sum_probs=146.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999998877788888888878888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|||++++.+++.+..|+..+........|+++|+||+|+ ..+.+..+++..+++.++++++++||++|.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998877678899999999999 4556778889999999999999999999999999999999
Q ss_pred HHHHhhC
Q 048059 169 KRLARVS 175 (198)
Q Consensus 169 ~~~~~~~ 175 (198)
+.+.++.
T Consensus 161 ~~~~~~~ 167 (170)
T 1g16_A 161 KLIQEKI 167 (170)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 9988754
No 26
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-36 Score=216.70 Aligned_cols=171 Identities=31% Similarity=0.546 Sum_probs=157.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
..+..+||+|+|++|||||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+..++..++.++|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 34567999999999999999999999988877777888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHhhCC
Q 048059 166 EIAKRLARVSP 176 (198)
Q Consensus 166 ~l~~~~~~~~~ 176 (198)
+|.+.+.+..+
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999988754
No 27
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-35 Score=210.61 Aligned_cols=168 Identities=29% Similarity=0.530 Sum_probs=154.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.+..+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 34579999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+........|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998876678899999999999887788889999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 048059 167 IAKRLARV 174 (198)
Q Consensus 167 l~~~~~~~ 174 (198)
|.+.+.+.
T Consensus 165 l~~~i~~~ 172 (203)
T 1zbd_A 165 LVDVICEK 172 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 28
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-36 Score=215.14 Aligned_cols=168 Identities=28% Similarity=0.441 Sum_probs=145.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....++|+|+|++|||||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++.++|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34569999999999999999999999888777777777554 34456777888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +.+..+++..++..++++++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 999999999999999888887766432 4689999999999864 5667788899999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 048059 165 YEIAKRLARVSP 176 (198)
Q Consensus 165 ~~l~~~~~~~~~ 176 (198)
++|.+.+.++..
T Consensus 163 ~~l~~~~~~~~~ 174 (199)
T 2gf0_A 163 QELLTLETRRNM 174 (199)
T ss_dssp HHHHHHCSSSCE
T ss_pred HHHHHHHhhhhc
Confidence 999998776554
No 29
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=206.59 Aligned_cols=172 Identities=34% Similarity=0.571 Sum_probs=154.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 34567999999999999999999999988888888898888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+.... ...|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999988764 5789999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 048059 166 EIAKRLARVSPPK 178 (198)
Q Consensus 166 ~l~~~~~~~~~~~ 178 (198)
+|.+.+.+...++
T Consensus 164 ~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 164 CITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999988765543
No 30
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=212.52 Aligned_cols=171 Identities=37% Similarity=0.639 Sum_probs=146.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.+..+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 35679999999999999999999999888777888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 181 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 181 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 048059 167 IAKRLARVSPP 177 (198)
Q Consensus 167 l~~~~~~~~~~ 177 (198)
|.+.+.+....
T Consensus 182 l~~~i~~~~~~ 192 (200)
T 2o52_A 182 CARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99998876543
No 31
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.7e-35 Score=207.21 Aligned_cols=172 Identities=31% Similarity=0.542 Sum_probs=152.6
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+....+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3455799999999999999999999999888888888887765 566778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHH-hCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQR-QGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+++|||++++.+++.+..|+..+.. ....+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999988844 445678999999999998777888899999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 048059 165 YEIAKRLARVSPPK 178 (198)
Q Consensus 165 ~~l~~~~~~~~~~~ 178 (198)
++|.+.+.+.....
T Consensus 164 ~~l~~~~~~~~~~~ 177 (181)
T 2fn4_A 164 EQLVRAVRKYQEQE 177 (181)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhccC
Confidence 99999998776543
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=7.3e-36 Score=210.52 Aligned_cols=170 Identities=32% Similarity=0.472 Sum_probs=149.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+.+ ..+.+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45679999999999999999999999887766678888777777777776 57899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (198)
+|+|||++++.+++.+..|+..+.... ....|+++|+||+|+...+.+..+++..+++.++++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999988887642 13345899999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 048059 163 LFYEIAKRLARVSP 176 (198)
Q Consensus 163 ~~~~l~~~~~~~~~ 176 (198)
+|++|.+.+.+...
T Consensus 163 l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 163 CFQKVAAEILGIKL 176 (178)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998876543
No 33
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.1e-35 Score=208.13 Aligned_cols=167 Identities=41% Similarity=0.704 Sum_probs=152.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888766677899999999999877788888999999999999999999999999999999
Q ss_pred HHHHHHh
Q 048059 167 IAKRLAR 173 (198)
Q Consensus 167 l~~~~~~ 173 (198)
|.+.+.+
T Consensus 171 l~~~~~~ 177 (179)
T 2y8e_A 171 VAAALPG 177 (179)
T ss_dssp HHHTCC-
T ss_pred HHHHHhh
Confidence 9886543
No 34
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=211.38 Aligned_cols=171 Identities=25% Similarity=0.291 Sum_probs=145.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-cchhhhcCCC
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-LAPMYYRGAA 84 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d 84 (198)
.....+||+|+|++|||||||+++|++........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++++|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 445679999999999999999999976544434445566666677777888899999999999987765 7788899999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
++|+|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999998887643 57899999999999887888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 048059 164 FYEIAKRLARVSP 176 (198)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (198)
|++|++.+.+...
T Consensus 179 f~~l~~~i~~~~~ 191 (195)
T 3cbq_A 179 FEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999998875443
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3e-35 Score=205.34 Aligned_cols=165 Identities=28% Similarity=0.512 Sum_probs=151.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999998887765 678999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHh
Q 048059 168 AKRLAR 173 (198)
Q Consensus 168 ~~~~~~ 173 (198)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 998864
No 36
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4e-35 Score=208.52 Aligned_cols=169 Identities=31% Similarity=0.555 Sum_probs=145.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+|+|++|||||||+++|++..+...+.++.+.. ....+.+++..+.+.+|||||++.+..++..++.++|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEE-EEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchhe-EEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 357999999999999999999999988777777776543 3556677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+. .+....+.+..++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999888753 3678999999999986 4566788899999999999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q 048059 167 IAKRLARVSPPK 178 (198)
Q Consensus 167 l~~~~~~~~~~~ 178 (198)
|.+.+.+.....
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999988766543
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.6e-35 Score=209.51 Aligned_cols=171 Identities=29% Similarity=0.510 Sum_probs=153.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEE-EEEEEeCCc---------EEEEEEEeCCCchhhccc
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF-TQILSLSEA---------TVKFDIWDTAGQERYHSL 75 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~~ 75 (198)
.....+||+|+|++|||||||+++|+++.+...+.++.+.++. ...+...+. .+.+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3456799999999999999999999998888888888888876 556666665 789999999999999999
Q ss_pred chhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059 76 APMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
+..+++++|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999999888654 67899999999999877788888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC
Q 048059 155 KTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
+++.|++++|++|.+.+.+...
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999887654
No 38
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=213.14 Aligned_cols=170 Identities=31% Similarity=0.533 Sum_probs=146.1
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|.+|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++.++|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 45579999999999999999999999998888888887776 56666777788999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999887653 35689999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 048059 166 EIAKRLARVSPP 177 (198)
Q Consensus 166 ~l~~~~~~~~~~ 177 (198)
+|.+.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999999887654
No 39
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=212.90 Aligned_cols=168 Identities=31% Similarity=0.546 Sum_probs=140.2
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 34557999999999999999999999988877788888888878888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC------CCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD------SQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
+|+|||++++.+++.+..|+..+........|+++|+||+|+. ..+.+..+++..++...+++++++||++|.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999999888766678999999999985 4567788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 048059 160 INELFYEIAKRLAR 173 (198)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (198)
++++|++|++.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.5e-34 Score=203.65 Aligned_cols=168 Identities=33% Similarity=0.552 Sum_probs=147.7
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 35667999999999999999999999998888888898888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCeEEEEccCCCCCH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLDSQREVPTEEGEQFSQ-ENGMFYIETSAKTAQNI 160 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 160 (198)
+++|||++++.+++.+..|+..+..... ...|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988877543 678999999999987 56677888899888 56789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 048059 161 NELFYEIAKRLARV 174 (198)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (198)
+++|++|++.+.+.
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
No 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=5.2e-35 Score=208.38 Aligned_cols=168 Identities=35% Similarity=0.609 Sum_probs=148.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc-ccchhhhcCCC
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH-SLAPMYYRGAA 84 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d 84 (198)
.....+||+|+|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++++|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 34557999999999999999999999998888888888888888888888888999999999999998 88999999999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC---CCH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA---QNI 160 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i 160 (198)
++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||+++ .|+
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence 9999999999999999999999988764 467899999999999877788889999999999999999999999 999
Q ss_pred HHHHHHHHHHHHh
Q 048059 161 NELFYEIAKRLAR 173 (198)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (198)
+++|++|.+.+.+
T Consensus 176 ~~l~~~l~~~i~~ 188 (189)
T 1z06_A 176 EAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887643
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=3.5e-35 Score=213.34 Aligned_cols=171 Identities=27% Similarity=0.439 Sum_probs=147.0
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|+++.+...+.++.+.++ ...+.+.+..+.+.+|||+|++.+..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 455679999999999999999999999998888888888776 4556677888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 048059 86 AVVVYDISNMDTFNR-ANKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIE 151 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 151 (198)
+|+|||++++++++. +..|+..+.... .+.|+++|+||+|+.. .+.+..+++..++..+++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 689999998874 5789999999999965 367889999999999999 9999
Q ss_pred EccCCCCC-HHHHHHHHHHHHHhhCCCC
Q 048059 152 TSAKTAQN-INELFYEIAKRLARVSPPK 178 (198)
Q Consensus 152 ~Sa~~~~~-i~~~~~~l~~~~~~~~~~~ 178 (198)
+||++|.| ++++|++|++.+.+.....
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred eccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 99999998 9999999999988765543
No 43
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=209.32 Aligned_cols=166 Identities=22% Similarity=0.422 Sum_probs=143.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..+ ..+++++|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 345679999999999999999999999988888888888766 445677888899999999999988775 679999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC---CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc-CCCCCHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG---NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA-KTAQNIN 161 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~ 161 (198)
+|+|||++++++++.+..|+..+.... ....|+++|+||+|+...+.+..+++..++..++++++++|| ++|.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999999887753 257899999999999877888889999999999999999999 8999999
Q ss_pred HHHHHHHHHHHh
Q 048059 162 ELFYEIAKRLAR 173 (198)
Q Consensus 162 ~~~~~l~~~~~~ 173 (198)
++|++|++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 44
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.1e-34 Score=206.05 Aligned_cols=170 Identities=28% Similarity=0.471 Sum_probs=149.9
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+++|++|||||||+++|+++.+...+.++.+..+. ..+.+.+..+.+.+|||||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 3456799999999999999999999999988888888887764 456678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC--CCCCCHHHHHHHHHHcCCe-EEEEccCCCCCHH
Q 048059 86 AVVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS--QREVPTEEGEQFSQENGMF-YIETSAKTAQNIN 161 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~ 161 (198)
+|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.. .+.+..+++..+++.+++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 77888887653 5789999999999865 3678889999999999998 9999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 048059 162 ELFYEIAKRLARVSPP 177 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~~ 177 (198)
++|++|++.+.+..+.
T Consensus 177 ~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 177 EVFEKSVDCIFSNKPV 192 (194)
T ss_dssp HHHHHHHHHHHCSCC-
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999876553
No 45
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.2e-34 Score=204.54 Aligned_cols=164 Identities=18% Similarity=0.334 Sum_probs=143.8
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|+++.+...+.++. ..+ ...+.+++..+.+.+|||+|++.+. +++++|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 45668999999999999999999999998887777773 333 4677888889999999999998776 7888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHcC-CeEEEEccCCCCCHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLD--SQREVPTEEGEQFSQENG-MFYIETSAKTAQNIN 161 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 161 (198)
+++|||++++.+++.+..|+..+..... ...|+++|+||+|+. ..+.+..+++..++..++ ++++++||++|.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999987643 578999999999994 567788899999999997 899999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 048059 162 ELFYEIAKRLARVSP 176 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~ 176 (198)
++|++|++.+.+...
T Consensus 169 ~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 169 RVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 46
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.6e-35 Score=213.53 Aligned_cols=171 Identities=29% Similarity=0.473 Sum_probs=145.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus 5 ~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 83 (212)
T 2j0v_A 5 SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI 83 (212)
T ss_dssp SCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred CcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence 345679999999999999999999999888877888887665 4456678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC--------CCCHHHHHHHHHHcCC-eEEEEccC
Q 048059 86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR--------EVPTEEGEQFSQENGM-FYIETSAK 155 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (198)
+|+|||++++++++.+. .|+..+.... ++.|++||+||+|+...+ .+..+++..++..+++ +++++||+
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK 162 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence 99999999999999986 8998888764 478999999999986543 2467888999999996 99999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCC
Q 048059 156 TAQNINELFYEIAKRLARVSPPK 178 (198)
Q Consensus 156 ~~~~i~~~~~~l~~~~~~~~~~~ 178 (198)
+|.|++++|++|++.+.+....+
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 163 TQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TCTTHHHHHHHHHHHHHCC----
T ss_pred CCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999998765543
No 47
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.3e-34 Score=202.53 Aligned_cols=165 Identities=24% Similarity=0.297 Sum_probs=134.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-cchhhhcCCCeEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-LAPMYYRGAAAAVV 88 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~ 88 (198)
.+||+++|++|||||||+++|++........++.+.+.....+.+++..+.+.+||++|++.+.. ++..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 47999999999999999999998776666666666777777788889899999999999998876 78888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998887644 478999999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 048059 168 AKRLARV 174 (198)
Q Consensus 168 ~~~~~~~ 174 (198)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 48
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=202.60 Aligned_cols=168 Identities=32% Similarity=0.412 Sum_probs=138.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--hcccchhhhcCCCe
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--YHSLAPMYYRGAAA 85 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~ 85 (198)
+..+||+|+|++|||||||+++|.+..+... .++.+.+.....+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 3469999999999999999999998776543 34567777777788888889999999999987 56677788899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887752 3578999999999998878888888999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 048059 165 YEIAKRLARVSP 176 (198)
Q Consensus 165 ~~l~~~~~~~~~ 176 (198)
++|.+.+.+...
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999999877654
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-34 Score=206.92 Aligned_cols=168 Identities=35% Similarity=0.641 Sum_probs=151.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....++|+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++.++|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 34569999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+........|+++|+||+|+ ..+.+..+++..++..++++++++||++|.|++++|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876667899999999999 45667788889999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 048059 167 IAKRLARVS 175 (198)
Q Consensus 167 l~~~~~~~~ 175 (198)
|.+.+.+..
T Consensus 176 l~~~~~~~~ 184 (213)
T 3cph_A 176 LAKLIQEKI 184 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887753
No 50
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1e-34 Score=205.09 Aligned_cols=170 Identities=33% Similarity=0.566 Sum_probs=136.1
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
....++|+|+|++|||||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4557999999999999999999999988888888888888777777776 566889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC----CCceEEEEEeCCCCC-CCCCCCHHHHHHHHH-HcCCeEEEEccCCCCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN----QIVVMALAANKSDLD-SQREVPTEEGEQFSQ-ENGMFYIETSAKTAQN 159 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~ 159 (198)
+|+|||++++.+++.+..|+..+..... ...|+++|+||+|+. ..+.+..+++..++. ..+++++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988877543 678999999999994 345667888888888 5678999999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q 048059 160 INELFYEIAKRLARVSP 176 (198)
Q Consensus 160 i~~~~~~l~~~~~~~~~ 176 (198)
++++|++|.+.+.+.+.
T Consensus 165 i~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 165 VDTAFEEIARSALQQNQ 181 (182)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999887643
No 51
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-34 Score=203.11 Aligned_cols=169 Identities=36% Similarity=0.660 Sum_probs=152.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999999998888888998888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+|+|||++++.+++.+..|+..+.... ....|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++|
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999998887653 2578999999999984 45677888999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 048059 165 YEIAKRLARVS 175 (198)
Q Consensus 165 ~~l~~~~~~~~ 175 (198)
++|.+.+.+..
T Consensus 170 ~~l~~~~~~~~ 180 (195)
T 1x3s_A 170 EELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHTSG
T ss_pred HHHHHHHHhhh
Confidence 99999988653
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.4e-34 Score=200.55 Aligned_cols=164 Identities=30% Similarity=0.580 Sum_probs=144.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 469999999999999999999999887777777777665 3445678888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
|||++++++++.+..|+..+..... .+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877643 578999999999998777788899999999999999999999999999999999
Q ss_pred HHHHHh
Q 048059 168 AKRLAR 173 (198)
Q Consensus 168 ~~~~~~ 173 (198)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=9.6e-34 Score=203.66 Aligned_cols=166 Identities=44% Similarity=0.746 Sum_probs=147.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcE----------------------------
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEAT---------------------------- 58 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999998888888888888877777776655
Q ss_pred ---------EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 59 ---------VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 59 ---------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
+.+.+|||||++.+...+..+++.+|++|+|||++++.+++.+..|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence 8899999999999999999999999999999999999999999999998887654 89999999999 55
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 130 QREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
.+.+..+++..++...+++++++||++|.|++++|++|.+.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 6677889999999999999999999999999999999999887653
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=2.6e-34 Score=200.38 Aligned_cols=163 Identities=31% Similarity=0.597 Sum_probs=145.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777878877665 3556678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-GMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|||++++.+++.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..+ +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 99999999999999998888774 3467899999999999877788888999999887 789999999999999999999
Q ss_pred HHHHHH
Q 048059 167 IAKRLA 172 (198)
Q Consensus 167 l~~~~~ 172 (198)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998774
No 55
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=206.38 Aligned_cols=170 Identities=26% Similarity=0.412 Sum_probs=140.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++.++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456689999999999999999999999887777778877555 4556778888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-eEEE
Q 048059 86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENGM-FYIE 151 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 151 (198)
+|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++..++..+++ ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999996 7998888764 4789999999999864 356778889999999887 9999
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 152 TSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
+||++|.|++++|++|++.+.+...+
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 199 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSDT 199 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999999998876553
No 56
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-33 Score=202.08 Aligned_cols=165 Identities=25% Similarity=0.433 Sum_probs=146.3
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 45679999999999999999999999988777788877665 45566778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEE
Q 048059 87 VVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIET 152 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 152 (198)
|+|||++++++++.+. .|+..+.... ++.|+++|+||+|+... +.+..+++..+++.+++ +++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 172 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999987 7988888764 47899999999999653 46778899999999998 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q 048059 153 SAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
||++|.|++++|++|.+.++.
T Consensus 173 Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 173 SALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998763
No 57
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.2e-34 Score=199.33 Aligned_cols=163 Identities=26% Similarity=0.347 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
.+||+++|++|||||||+++|.+.... ...++.+.++ ...+.+.+..+.+.+||++|++.+...+..++.++|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999875543 3345556555 45667888899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
||++++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887753 36789999999999988888999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 048059 169 KRLARV 174 (198)
Q Consensus 169 ~~~~~~ 174 (198)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988765
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.9e-34 Score=199.96 Aligned_cols=164 Identities=31% Similarity=0.574 Sum_probs=146.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888777777766544 5666788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
|||++++.+++.+..|+..+.... ..+.|+++|+||+|+...+++..++...++..++++++++||++|.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999988887753 3578999999999998777888889999999999999999999999999999999
Q ss_pred HHHHHh
Q 048059 168 AKRLAR 173 (198)
Q Consensus 168 ~~~~~~ 173 (198)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998764
No 59
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=8.3e-34 Score=200.13 Aligned_cols=162 Identities=23% Similarity=0.375 Sum_probs=138.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+++|++|||||||+++|+++.+.. +.++.+..+ ...+.+++..+.+.+|||+|+++ ..+++++|++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ 76 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV 76 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence 3567999999999999999999999988765 677777554 56677788889999999999876 4678899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh---CCCCceEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCeEEEEccCCCCCH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQ---GNQIVVMALAANKSDLD--SQREVPTEEGEQFSQEN-GMFYIETSAKTAQNI 160 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 160 (198)
|+|||++++++++.+..|+..+... ...+.|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|+
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999999877666553 23678999999999994 56678888999998876 689999999999999
Q ss_pred HHHHHHHHHHHHhhC
Q 048059 161 NELFYEIAKRLARVS 175 (198)
Q Consensus 161 ~~~~~~l~~~~~~~~ 175 (198)
+++|++|.+.+.+..
T Consensus 157 ~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 157 DRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 60
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-34 Score=206.46 Aligned_cols=170 Identities=26% Similarity=0.337 Sum_probs=141.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcccchhhhcCCC
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHSLAPMYYRGAA 84 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d 84 (198)
....+||+|+|++|||||||+++|.+.... ....++++.++....+.+++..+.+.+|||+|.+. +..+...+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 345699999999999999999999964331 22234567777677778888889999999999876 4556777889999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 163 (198)
++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999998887653 2356899999999999877788888888999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 048059 164 FYEIAKRLARVSP 176 (198)
Q Consensus 164 ~~~l~~~~~~~~~ 176 (198)
|++|++.+.....
T Consensus 194 f~~l~~~i~~~~~ 206 (211)
T 2g3y_A 194 FEGIVRQVRLRRD 206 (211)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999876554
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.4e-34 Score=202.70 Aligned_cols=169 Identities=30% Similarity=0.574 Sum_probs=148.7
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..++.++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 345679999999999999999999999888777777777665 4455677888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+++|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..+++.++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999988877543 578999999999998777788899999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 048059 165 YEIAKRLARVS 175 (198)
Q Consensus 165 ~~l~~~~~~~~ 175 (198)
++|.+.+.++.
T Consensus 173 ~~l~~~i~~~~ 183 (187)
T 2a9k_A 173 FDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 62
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=1.4e-34 Score=210.42 Aligned_cols=170 Identities=29% Similarity=0.493 Sum_probs=149.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc----------EEEEEEEeCCCchhhcccc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA----------TVKFDIWDTAGQERYHSLA 76 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~ 76 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+.+. .+.+.||||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 356799999999999999999999998877777777777776666766665 7889999999999999999
Q ss_pred hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059 77 PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK 155 (198)
Q Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (198)
..++.++|++|+|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..++..++++++++||+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 9999999999999999999999999999887765443 678999999999998777888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCC
Q 048059 156 TAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 156 ~~~~i~~~~~~l~~~~~~~~~ 176 (198)
++.|++++|++|.+.+.+...
T Consensus 182 ~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp TTBTHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998887544
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-34 Score=204.92 Aligned_cols=168 Identities=33% Similarity=0.522 Sum_probs=148.2
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..++.++|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 35579999999999999999999999988877888877665 45566788889999999999987 77888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC-CHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ-NINELF 164 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~ 164 (198)
|+|||++++++++.+..|+..+.... ....|+++|+||+|+...+.+..+++..++..++++++++||++|. |++++|
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 99999999999999999998887753 3678999999999998777888899999999999999999999999 999999
Q ss_pred HHHHHHHHhhCC
Q 048059 165 YEIAKRLARVSP 176 (198)
Q Consensus 165 ~~l~~~~~~~~~ 176 (198)
++|++.+.++.+
T Consensus 183 ~~l~~~i~~~~~ 194 (196)
T 2atv_A 183 YELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcc
Confidence 999999987654
No 64
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.1e-33 Score=200.53 Aligned_cols=166 Identities=24% Similarity=0.415 Sum_probs=146.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+..+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++.++|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999888777778777655 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059 88 VVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS 153 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (198)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 7888887764 37899999999998643 56778889999999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhC
Q 048059 154 AKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~ 175 (198)
|++|.|++++|++|.+.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999886543
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=6.9e-34 Score=201.79 Aligned_cols=165 Identities=27% Similarity=0.472 Sum_probs=144.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999888777788887665 44567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 048059 87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENG-MFYIET 152 (198)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 152 (198)
|+|||++++++++.+ ..|+..+.... +..|+++|+||+|+.. .+.+..+++..+++.++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78988887764 5789999999999964 25678889999999887 699999
Q ss_pred ccC-CCCCHHHHHHHHHHHHHh
Q 048059 153 SAK-TAQNINELFYEIAKRLAR 173 (198)
Q Consensus 153 Sa~-~~~~i~~~~~~l~~~~~~ 173 (198)
||+ ++.|++++|+++.+.+.+
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHT
T ss_pred eecCCCcCHHHHHHHHHHHHhc
Confidence 999 689999999999998864
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.4e-34 Score=208.77 Aligned_cols=169 Identities=22% Similarity=0.421 Sum_probs=114.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCcceeEEEEEEEeCCc--EEEEEEEeCCCchhhcccchhhhcCC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG--QFYDQQEPTIGAAFFTQILSLSEA--TVKFDIWDTAGQERYHSLAPMYYRGA 83 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~ 83 (198)
...+||+|+|++|||||||+++|++. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..++.++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 56799999999999999999999988 666677788877777777778777 88999999999999999999999999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCCC-CCCCCHHHHHHHHHHcCCeEEEEccCC-CC
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGN---QIVVMALAANKSDLDS-QREVPTEEGEQFSQENGMFYIETSAKT-AQ 158 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 158 (198)
|++|+|||++++.+++.+..|+..+..... ...|+++|+||+|+.. .+.+..+++..++..++++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 6889999999999987 778888999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhhCC
Q 048059 159 NINELFYEIAKRLARVSP 176 (198)
Q Consensus 159 ~i~~~~~~l~~~~~~~~~ 176 (198)
|++++|++|.+.+.+...
T Consensus 178 gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNYE 195 (208)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999998876543
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=5.9e-33 Score=197.78 Aligned_cols=170 Identities=31% Similarity=0.552 Sum_probs=136.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
+.+..+||+++|.+|||||||+++|+++.+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 356679999999999999999999999887777767766554 4556677888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+++|||++++.+++.+..|+..+..... ...|+++|+||+|+.. +.+..+++.++++.++++++++||+++.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988877533 5689999999999865 5667888999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 048059 165 YEIAKRLARVSPP 177 (198)
Q Consensus 165 ~~l~~~~~~~~~~ 177 (198)
++|.+.+.+...+
T Consensus 175 ~~l~~~~~~~~~~ 187 (190)
T 3con_A 175 YTLVREIRQYRMK 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 9999998876543
No 68
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-33 Score=203.19 Aligned_cols=165 Identities=27% Similarity=0.472 Sum_probs=144.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++.++|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 35579999999999999999999999988877788887766 44567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcC-CeEEEE
Q 048059 87 VVVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDS------------QREVPTEEGEQFSQENG-MFYIET 152 (198)
Q Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~ 152 (198)
|+|||++++.+++.+ ..|+..+.... ...|+++|+||+|+.. .+.+..+++..+++.++ ++++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 78988887764 5789999999999964 35678888999999887 699999
Q ss_pred ccC-CCCCHHHHHHHHHHHHHh
Q 048059 153 SAK-TAQNINELFYEIAKRLAR 173 (198)
Q Consensus 153 Sa~-~~~~i~~~~~~l~~~~~~ 173 (198)
||+ ++.|++++|++|++.++.
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999998875
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5.7e-34 Score=207.31 Aligned_cols=173 Identities=28% Similarity=0.439 Sum_probs=148.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCC-cEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSE-ATVKFDIWDTAGQERYHSLAPMYYRGAA 84 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d 84 (198)
.....+||+|+|.+|||||||+++|+++.+...+.++.+...........+ ..+.+.+|||+|++.+...+..++.++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 345679999999999999999999998887777778888776666655543 4488999999999999999999999999
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
++|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+.+..++...+++++++||++|.|++++|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 99999999999999999999999988766678999999999998777888889999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 048059 165 YEIAKRLARVSPPK 178 (198)
Q Consensus 165 ~~l~~~~~~~~~~~ 178 (198)
++|.+.+.+.....
T Consensus 167 ~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 167 LHLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHHHCCTTCC
T ss_pred HHHHHHHhcccccc
Confidence 99999988766543
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=8e-33 Score=199.00 Aligned_cols=164 Identities=30% Similarity=0.487 Sum_probs=145.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+|+|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 55799999999999999999999999888778888877764 34567888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059 88 VVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS 153 (198)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (198)
+|||++++++++.+ ..|+..+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 67888887754 57899999999998654 56778889999999998 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q 048059 154 AKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~ 173 (198)
|++|.|++++|++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=204.49 Aligned_cols=167 Identities=29% Similarity=0.516 Sum_probs=125.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++.++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4579999999999999999999998887777777776554 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059 88 VVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS 153 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (198)
+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..+++..+++.+++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 7888887764 57899999999999654 36778888999999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCC
Q 048059 154 AKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
|++|.|++++|++|.+.+.+...
T Consensus 190 A~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999886543
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.5e-32 Score=190.98 Aligned_cols=163 Identities=33% Similarity=0.592 Sum_probs=143.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|.+..+...+.++.+..+ ...+...+..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 358999999999999999999999887777777766544 4556677888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC-CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGN-QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++..++++.++++++++||++|.|+++++++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988877533 4789999999999865 5567888999999999999999999999999999999
Q ss_pred HHHHHh
Q 048059 168 AKRLAR 173 (198)
Q Consensus 168 ~~~~~~ 173 (198)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=198.68 Aligned_cols=166 Identities=30% Similarity=0.493 Sum_probs=140.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+..+||+|+|++|||||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 567999999999999999999999988877777777766543 3567888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEc
Q 048059 88 VVYDISNMDTFNRA-NKLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETS 153 (198)
Q Consensus 88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 153 (198)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+... +.+..+++..++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999998 67888887754 57899999999998654 56778888999999988 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhC
Q 048059 154 AKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~ 175 (198)
|++|.|++++|++|.+.+.+..
T Consensus 181 A~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887543
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-33 Score=196.67 Aligned_cols=163 Identities=26% Similarity=0.461 Sum_probs=142.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+++|++|||||||+++|+++.+...+.++.+.++ ...+...+..+.+.+|||||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 368999999999999999999999887777777777655 3445667778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|||++++.+++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999888888776432 46899999999999877778888889999999999999999999999999999
Q ss_pred HHHHHH
Q 048059 167 IAKRLA 172 (198)
Q Consensus 167 l~~~~~ 172 (198)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987553
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=215.18 Aligned_cols=168 Identities=36% Similarity=0.630 Sum_probs=142.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 45679999999999999999999998887777777888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
|+|||++++.+++.+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999998776678999999999999877777777788999999999999999999999999999
Q ss_pred HHHHHHhh
Q 048059 167 IAKRLARV 174 (198)
Q Consensus 167 l~~~~~~~ 174 (198)
|.+.+.++
T Consensus 190 l~~~l~~~ 197 (199)
T 3l0i_B 190 MAAEIKKR 197 (199)
T ss_dssp HTTTTTTT
T ss_pred HHHHHHHh
Confidence 98876543
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=7e-34 Score=203.40 Aligned_cols=170 Identities=20% Similarity=0.244 Sum_probs=138.2
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------CCCcceeEEEEEE-EeCCcEEEEEEEeCCCchh
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ-----------EPTIGAAFFTQIL-SLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~ 71 (198)
+......+||+|+|++|||||||++.+.+. +...+ .++.+.++....+ .+++..+.+.+|||||++.
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 345677899999999999999999766653 33332 3344544444434 5667788999999999999
Q ss_pred hcccchhhhcCCCeEEEEEECC------ChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc
Q 048059 72 YHSLAPMYYRGAAAAVVVYDIS------NMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN 145 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 145 (198)
+...+..+++++|++|+|||++ +.++++.+..|+..+. ....+.|+++|+||+|+... +..+++.+++...
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE 163 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence 9999999999999999999999 5567777777877763 23467899999999998653 6788999999999
Q ss_pred CC-eEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 146 GM-FYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 146 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
++ +++++||++|.|++++|++|.+.+.+....
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 99 999999999999999999999999887653
No 77
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3e-33 Score=201.74 Aligned_cols=164 Identities=24% Similarity=0.413 Sum_probs=139.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 456679999999999999999999999888777777776443 5566678888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEE
Q 048059 86 AVVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQENGM-FYIE 151 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~ 151 (198)
+|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..+++..+++..++ ++++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999996 7888888765 678999999999986532 3778889999999987 5999
Q ss_pred EccCCCCCHHHHHHHHHHHH
Q 048059 152 TSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~ 171 (198)
+||++|.|++++|++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 78
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.8e-32 Score=195.88 Aligned_cols=169 Identities=26% Similarity=0.363 Sum_probs=138.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-hcccchhhhcCCCe
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-YHSLAPMYYRGAAA 85 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~ 85 (198)
...+||+++|++|||||||+++|.+.... ....++.+.++....+.+++..+.+.+|||+|.+. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 34699999999999999999999964321 22234466676677778888889999999999876 55677888899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
+++|||++++++|+.+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence 999999999999999999988887653 3578999999999997777788888888888899999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 048059 165 YEIAKRLARVSP 176 (198)
Q Consensus 165 ~~l~~~~~~~~~ 176 (198)
++|.+.+.....
T Consensus 164 ~~l~~~~~~~~~ 175 (192)
T 2cjw_A 164 EGIVRQVRLRRD 175 (192)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHhhcc
Confidence 999998865543
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=6.1e-34 Score=201.32 Aligned_cols=164 Identities=29% Similarity=0.490 Sum_probs=126.9
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+.+..+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 455799999999999999999999998877777777665442 2234556677888999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCCC----------CCHHHHHHHHHHcCC-eEEEEcc
Q 048059 87 VVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQRE----------VPTEEGEQFSQENGM-FYIETSA 154 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 154 (198)
++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+...+. +..+++..++..+++ +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999997 7988888764 4789999999999865433 477888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 048059 155 KTAQNINELFYEIAKRLA 172 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~ 172 (198)
++|.|++++|++|.+.+.
T Consensus 163 ~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998775
No 80
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=2.9e-33 Score=204.10 Aligned_cols=169 Identities=28% Similarity=0.508 Sum_probs=150.0
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|.+|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||+|++.+..++..++.++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 45667999999999999999999987777777778888989888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHH
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFY 165 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 165 (198)
+|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+...... .+...++...+++++++||++|.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999998874 57899999999998654432 356678888899999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 048059 166 EIAKRLARVSPP 177 (198)
Q Consensus 166 ~l~~~~~~~~~~ 177 (198)
+|.+.+......
T Consensus 168 ~l~~~l~~~~~~ 179 (221)
T 3gj0_A 168 WLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHTCTTC
T ss_pred HHHHHHHhCccc
Confidence 999999876554
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=5.5e-33 Score=199.15 Aligned_cols=168 Identities=19% Similarity=0.263 Sum_probs=130.9
Q ss_pred CCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCC
Q 048059 5 GNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGA 83 (198)
Q Consensus 5 ~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 83 (198)
++.....||+|+|.+|||||||+++|+++.+.. .+.++.+..... +....+.+.+|||+|++.+..++..+++++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYDNI 87 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence 356678999999999999999999999988877 677888754332 234567899999999999999999999999
Q ss_pred CeEEEEEECCChhhHHHHHHHHHHHHHhCC--------CCceEEEEEeCCCCCCCCCCCHHHHH-HH-----HHHcCCeE
Q 048059 84 AAAVVVYDISNMDTFNRANKLVQELQRQGN--------QIVVMALAANKSDLDSQREVPTEEGE-QF-----SQENGMFY 149 (198)
Q Consensus 84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~-----~~~~~~~~ 149 (198)
|++|+|||++++++++.+..|+..+..... ...|+++|+||+|+..... .++.. .+ +...++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~ 165 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI 165 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence 999999999999999999888887765311 3789999999999976532 22221 11 14467899
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHhhCCCC
Q 048059 150 IETSAKTAQNINELFYEIAKRLARVSPPK 178 (198)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 178 (198)
+++||++|.|++++|++|.+.+.+.....
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 194 (199)
T 4bas_A 166 FASNGLKGTGVHEGFSWLQETASRQSGKA 194 (199)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHHC---
T ss_pred EEeeCCCccCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999998876543
No 82
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=7e-31 Score=188.55 Aligned_cols=168 Identities=39% Similarity=0.670 Sum_probs=149.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
+..++|+|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++.++++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 34699999999999999999999998887778888888887888888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 167 (198)
+|||+++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998889888876655678999999999998777777888999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 048059 168 AKRLARVS 175 (198)
Q Consensus 168 ~~~~~~~~ 175 (198)
.+.+.+..
T Consensus 163 ~~~~~~~~ 170 (199)
T 2f9l_A 163 LTEIYRIV 170 (199)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=4.8e-32 Score=189.65 Aligned_cols=161 Identities=20% Similarity=0.344 Sum_probs=128.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|++|||||||+++|.++.+. .+.++.+... ..+.+. ...+.+|||||++.+...+..+++++|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 34689999999999999999999988764 4556666443 333343 567899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQF-----SQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+..... .++.... +...+++++++||++|.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999999988887776542 25789999999999865432 2222222 22346689999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 048059 162 ELFYEIAKRLARVS 175 (198)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (198)
++|++|.+.+.+++
T Consensus 158 ~l~~~l~~~i~~~q 171 (171)
T 1upt_A 158 EAMEWLVETLKSRQ 171 (171)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999887653
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.98 E-value=1.6e-32 Score=195.47 Aligned_cols=161 Identities=22% Similarity=0.328 Sum_probs=130.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|+++.+...+.++.+.++.. + ....+.+.+|||||++.+...+..++.++|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 4557999999999999999999999988877788888876543 2 23457789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNI 160 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i 160 (198)
|+|||++++++++.+..|+..+... ...+.|+++|+||+|+.... ..++...... ..+++++++||++|.|+
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv 172 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNI 172 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence 9999999999999998888877653 22678999999999986532 2222222211 23567999999999999
Q ss_pred HHHHHHHHHHHHh
Q 048059 161 NELFYEIAKRLAR 173 (198)
Q Consensus 161 ~~~~~~l~~~~~~ 173 (198)
+++|++|.+.+.+
T Consensus 173 ~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 173 DITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886644
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.98 E-value=5.3e-31 Score=187.76 Aligned_cols=161 Identities=21% Similarity=0.282 Sum_probs=129.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ-FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
....+||+|+|.+|||||||+++|++.. +...+.++.+.. ...+.+++ +.+.+|||+|++.+...+..++.++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 4557999999999999999999999877 455666777643 44444443 678999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhCC---CCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQGN---QIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTA 157 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 157 (198)
+|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. ....++...+.. ..+++++++||++|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999988888877533 5789999999999864 334555655553 23678999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 048059 158 QNINELFYEIAKRLAR 173 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~ 173 (198)
.|++++|++|.+.+.+
T Consensus 172 ~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQT 187 (190)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999987654
No 86
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.98 E-value=2.4e-30 Score=184.74 Aligned_cols=165 Identities=39% Similarity=0.667 Sum_probs=149.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
.+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..++.+++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 34579999999999999999999999988888889999888888888899889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHH
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYE 166 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 166 (198)
++|||.++..+++.+..|+..+........|+++++||+|+...+.+..+++..++...++.++++||+++.|++++|++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~ 185 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQT 185 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999998888988877665567899999999999877777788999999999999999999999999999999
Q ss_pred HHHHH
Q 048059 167 IAKRL 171 (198)
Q Consensus 167 l~~~~ 171 (198)
|.+.+
T Consensus 186 l~~~i 190 (191)
T 1oix_A 186 ILTEI 190 (191)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98865
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.98 E-value=2e-31 Score=191.28 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=122.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...++|+++|++|||||||+++|.++.+. .+.+|.+.+. ..+.+++ +.+.+|||||++.+...+..+++++|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34689999999999999999999987753 4556766653 3444554 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------cCCeE
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----------------NGMFY 149 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~ 149 (198)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.. .+..+++.+++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999998887664 235789999999999865 5566777776652 34689
Q ss_pred EEEccCCCCCHHHHHHHHHHH
Q 048059 150 IETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.98 E-value=1e-30 Score=185.60 Aligned_cols=160 Identities=20% Similarity=0.253 Sum_probs=130.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|++|||||||+++|+++. ...+.++.+... ..+.++ ...+.+|||||++.+...+..+++++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999887 666777777543 333343 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++.+++.+..|+..+... ...+.|+++|+||+|+..... .++..+... ..+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999998888877654 235789999999999865432 333333222 346689999999999999
Q ss_pred HHHHHHHHHHHhh
Q 048059 162 ELFYEIAKRLARV 174 (198)
Q Consensus 162 ~~~~~l~~~~~~~ 174 (198)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.98 E-value=7.3e-31 Score=187.21 Aligned_cols=156 Identities=20% Similarity=0.217 Sum_probs=127.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|++|||||||+++|.++.+. .+.++.+.+ ...+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988764 456776665 34444554 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCeEEEEcc
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE------------NGMFYIETSA 154 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 154 (198)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.. .+..+++.++... .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999999998887653 235789999999999865 4556666665432 3568999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 048059 155 KTAQNINELFYEIAKR 170 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~ 170 (198)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=2.5e-32 Score=189.93 Aligned_cols=156 Identities=20% Similarity=0.351 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEE
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVY 90 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 90 (198)
+||+++|++|||||||+++|+++.+.. +.||.+.. ...+.. ..+.+.+|||||++.+...+..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 55676643 233333 4467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHHHHH
Q 048059 91 DISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNINELF 164 (198)
Q Consensus 91 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 164 (198)
|++++++++.+..|+..+... ...+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888877653 33578999999999986532 222222221 1235679999999999999999
Q ss_pred HHHHHHHHh
Q 048059 165 YEIAKRLAR 173 (198)
Q Consensus 165 ~~l~~~~~~ 173 (198)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987754
No 91
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=2.6e-31 Score=188.05 Aligned_cols=158 Identities=20% Similarity=0.304 Sum_probs=125.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAA 85 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 85 (198)
.....+||+|+|.+|||||||+++|+++.+ ..+.++.+.... .+.+.+ +.+.+|||+|++.+...+..++.++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 455679999999999999999999998876 555677775543 333433 788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCC
Q 048059 86 AVVVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQN 159 (198)
Q Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~ 159 (198)
+|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+... ...++...... ..+++++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999988888776542 367899999999998653 33444444332 2456899999999999
Q ss_pred HHHHHHHHHHH
Q 048059 160 INELFYEIAKR 170 (198)
Q Consensus 160 i~~~~~~l~~~ 170 (198)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.7e-31 Score=187.13 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=126.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...++|+++|++|||||||+++|+++.+. .+.+|.+.... .+.++ .+.+.+|||||++++...+..++.++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999987765 56677765433 33343 378899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+... ...++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988887642 357899999999998653 33444444432 346689999999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q 048059 162 ELFYEIAKRLARVSPP 177 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~~ 177 (198)
++|++|.+.+.+..+.
T Consensus 167 ~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEH 182 (187)
T ss_dssp HHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999987655543
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=6.6e-32 Score=192.94 Aligned_cols=159 Identities=19% Similarity=0.346 Sum_probs=119.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+|+|++|||||||+++|+++.+. .+.+|.+.. ...+.. ..+.+.+|||||++.+...+..++.++|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999987754 344555533 333333 4478899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 999999999999998888877653 23578999999999986542 222222211 1234679999999999999
Q ss_pred HHHHHHHHHHHh
Q 048059 162 ELFYEIAKRLAR 173 (198)
Q Consensus 162 ~~~~~l~~~~~~ 173 (198)
++|++|.+.+.+
T Consensus 180 ~l~~~l~~~i~~ 191 (192)
T 2b6h_A 180 DGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999987753
No 94
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.5e-33 Score=203.14 Aligned_cols=163 Identities=25% Similarity=0.431 Sum_probs=138.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....+||+|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 35679999999999999999999998887766667765544 34455667778889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcCC-eEEEE
Q 048059 87 VVVYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR------------EVPTEEGEQFSQENGM-FYIET 152 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 152 (198)
|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..+++..+++..++ +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999886 7888776653 378999999999996542 4556777888888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 048059 153 SAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~ 171 (198)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=7.6e-30 Score=196.30 Aligned_cols=163 Identities=24% Similarity=0.412 Sum_probs=144.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..++|+++|.+|+|||||+++++++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 358999999999999999999999888777778776555 4556778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-eEEEEcc
Q 048059 89 VYDISNMDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQ------------REVPTEEGEQFSQENGM-FYIETSA 154 (198)
Q Consensus 89 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa 154 (198)
|||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999986 7888887764 37899999999998543 67788999999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 048059 155 KTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 155 ~~~~~i~~~~~~l~~~~~~ 173 (198)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.3e-31 Score=190.08 Aligned_cols=164 Identities=19% Similarity=0.336 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCcceeEEEEEEEe---CCcEEEEEEEeCCCchhhcccchhhhcCCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG--QFYDQQEPTIGAAFFTQILSL---SEATVKFDIWDTAGQERYHSLAPMYYRGAA 84 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 84 (198)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.. .+..+.+.+|||+|++.+..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 444556778887766655443 235678999999999999999999999999
Q ss_pred eEEEEEECCCh-hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC---HHHHHHHHHHcCCe----EEEEccCC
Q 048059 85 AAVVVYDISNM-DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP---TEEGEQFSQENGMF----YIETSAKT 156 (198)
Q Consensus 85 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~ 156 (198)
++++|||++++ .+++.+..|+..+.... .+.|+++|+||+|+...+.+. .+....++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57899999999887764 468999999999986543321 23345566667776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHhh
Q 048059 157 AQ-NINELFYEIAKRLARV 174 (198)
Q Consensus 157 ~~-~i~~~~~~l~~~~~~~ 174 (198)
+. +++++++.|.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CchhHHHHHHHHHHHHhcc
Confidence 97 9999999998877653
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.8e-31 Score=190.02 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=127.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|++|||||||+++|.++.+. .+.+|.+... ..+... .+.+.+|||||++.+...+..+++++|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999877654 3556666443 333333 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHH-----HHHcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQF-----SQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+..... .++.... +...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988887776542 35789999999999865432 2222222 12345689999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 048059 162 ELFYEIAKRLARVS 175 (198)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (198)
++|++|.+.+.+.+
T Consensus 173 ~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 173 EGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987654
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=1.7e-31 Score=189.14 Aligned_cols=159 Identities=20% Similarity=0.279 Sum_probs=124.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...++|+++|++|||||||+++|.+..+ ..+.++.+... ..+.++ .+.+.+|||||++.+...+..++.++|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4579999999999999999999998753 34456666443 333344 467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFS-----QENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++.+..|+..+... ...+.|+++|+||+|+..... .++..... ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776543 235689999999999865433 23332221 1235679999999999999
Q ss_pred HHHHHHHHHHHh
Q 048059 162 ELFYEIAKRLAR 173 (198)
Q Consensus 162 ~~~~~l~~~~~~ 173 (198)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=2.7e-31 Score=190.32 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=122.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEE--EEEe-CCcEEEEEEEeCCCchhhcccc---hhh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQ--ILSL-SEATVKFDIWDTAGQERYHSLA---PMY 79 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~D~~g~~~~~~~~---~~~ 79 (198)
+....+||+++|++|||||||++++.+.. ... ++.+.++... ...+ .+..+.+.+|||+|++.|.... ..+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 45668999999999999999999887643 222 3333333222 2223 2566789999999999987766 899
Q ss_pred hcCCCeEEEEEECCCh--hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC-------CCCCCHHHHHHHHH----HcC
Q 048059 80 YRGAAAAVVVYDISNM--DTFNRANKLVQELQRQGNQIVVMALAANKSDLDS-------QREVPTEEGEQFSQ----ENG 146 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~ 146 (198)
++++|++|+|||++++ ++++.+..|+..+... ..+.|+++|+||+|+.. .+.+..+....++. .++
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999987 6667777777776543 35789999999999754 23455566777777 678
Q ss_pred CeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 147 MFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 147 ~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
++++++||++ .|++++|+.|++.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 8999999999 99999999998865
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-30 Score=184.30 Aligned_cols=161 Identities=24% Similarity=0.332 Sum_probs=126.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+++|++|||||||+++|+++.+ ..+.++.+... ..+.+. ...+.+|||||++.+...+..++.++|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998776 55667777543 333343 377899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhC-CCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQG-NQIVVMALAANKSDLDSQREVPTEEGEQFSQE-----NGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+... ...++..+.... .+++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888776643 467899999999998653 233444443321 34579999999999999
Q ss_pred HHHHHHHHHHHhhC
Q 048059 162 ELFYEIAKRLARVS 175 (198)
Q Consensus 162 ~~~~~l~~~~~~~~ 175 (198)
++|++|.+.+.+++
T Consensus 169 ~l~~~l~~~~~~~q 182 (183)
T 1moz_A 169 EGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987654
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.5e-31 Score=195.58 Aligned_cols=167 Identities=19% Similarity=0.255 Sum_probs=125.3
Q ss_pred CCCceeeeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCCc-ceeEEEEEE--------------EeCC
Q 048059 4 PGNKIIQAKLVLLGDM---------GTGKTSLALRFIK---GQFYDQQEPTI-GAAFFTQIL--------------SLSE 56 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~---------~sGKssli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~ 56 (198)
+...+..+||+|+|.+ |||||||+++|++ ..+...+.++. +.++....+ .+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3455667999999999 9999999999998 44555555554 333221111 1355
Q ss_pred cEEEEEEEe-----------------------CCCchhhcccchhhhc---------------------CCCeEEEEEEC
Q 048059 57 ATVKFDIWD-----------------------TAGQERYHSLAPMYYR---------------------GAAAAVVVYDI 92 (198)
Q Consensus 57 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~ 92 (198)
..+.+.||| ++|++++..++..++. ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 678899999 6677777777777777 79999999999
Q ss_pred CCh--hhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCeEEEEccCCCCCHHHHHHHHH
Q 048059 93 SNM--DTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQE-NGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 93 ~~~--~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
+++ .+++.+..|+..+... ...+.|+++|+||+|+...+.+ +++..++.. .+++++++||++|.|++++|++|.
T Consensus 173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~ 250 (255)
T 3c5h_A 173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250 (255)
T ss_dssp BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence 998 9999999999888765 3356899999999998654433 567777776 488999999999999999999999
Q ss_pred HHHH
Q 048059 169 KRLA 172 (198)
Q Consensus 169 ~~~~ 172 (198)
+.+.
T Consensus 251 ~~l~ 254 (255)
T 3c5h_A 251 QLID 254 (255)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=3e-29 Score=174.92 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=114.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhhc-
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYYR- 81 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~- 81 (198)
..++|+++|++|||||||+++|++..+.....++.+.+.....+.+.+ ..+.+|||||++.+.. +...++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 358999999999999999999998765544445444444444444443 5788999999887642 3355554
Q ss_pred -CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 82 -GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 82 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
++|++++|+|.++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +...++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 8999999999987543 3456666654 3579999999999864444432 367788888999999999999999
Q ss_pred HHHHHHHHHHH
Q 048059 161 NELFYEIAKRL 171 (198)
Q Consensus 161 ~~~~~~l~~~~ 171 (198)
+++|++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=2.1e-29 Score=182.69 Aligned_cols=160 Identities=24% Similarity=0.277 Sum_probs=114.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc-EEEEEEEeCCCchhhcc-cchhhhcCCC
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA-TVKFDIWDTAGQERYHS-LAPMYYRGAA 84 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d 84 (198)
....+||+++|++|||||||+++|+++.+...+.+ .+.++.. +.+++. .+.+.+|||||++.+.. ++..+++++|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 34579999999999999999999999887666543 3344333 455544 67899999999999987 8889999999
Q ss_pred eEEEEEECCChh-hHHHHHH-HHHHHHHh--CCCCceEEEEEeCCCCCCCCCCCHHHHHHH-------------------
Q 048059 85 AAVVVYDISNMD-TFNRANK-LVQELQRQ--GNQIVVMALAANKSDLDSQREVPTEEGEQF------------------- 141 (198)
Q Consensus 85 ~~i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~------------------- 141 (198)
++|+|||+++.. ++..... |...+... .....|+++|+||+|+...... .+....+
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA-KLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH-HHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH-HHHHHHHHHHHHHHhccchhcccccc
Confidence 999999999854 4555544 44444432 3456899999999999754432 1111111
Q ss_pred ----------------HH-Hc--CCeEEEEccCCC------CCHHHHHHHHHHH
Q 048059 142 ----------------SQ-EN--GMFYIETSAKTA------QNINELFYEIAKR 170 (198)
Q Consensus 142 ----------------~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~ 170 (198)
+. .+ +++|++|||++| .|++++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 11 668999999999 9999999999875
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=5.1e-28 Score=170.21 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=120.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAA 86 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 86 (198)
....++|+++|++|||||||+++|++..+...+.++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34578999999999999999999999887766666665555455555555 3567999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CeEEEEccCCC
Q 048059 87 VVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-------G--MFYIETSAKTA 157 (198)
Q Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~ 157 (198)
|+|||++++...+... + +......+.|+++|+||+|+... ..+......... + ++++++||++|
T Consensus 83 i~v~d~~~~~~~~~~~-~---l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVE-A---INHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK 155 (178)
T ss_dssp EEEEETTCCCCHHHHH-H---HHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred EEEEECCCCCcHHHHH-H---HHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence 9999998843222211 1 12222346799999999998653 223333333222 2 58999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCC
Q 048059 158 QNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~~~ 177 (198)
.|++++|++|.+.+.....+
T Consensus 156 ~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 156 EGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp HHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHhhhhhccc
Confidence 99999999999987765543
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=5.2e-28 Score=177.09 Aligned_cols=165 Identities=14% Similarity=0.092 Sum_probs=116.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch------hh---cccchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE------RY---HSLAPM 78 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~~---~~~~~~ 78 (198)
...++|+|+|++|||||||+++|++..+.....+....+........ ....+.+|||||.. .. ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 45799999999999999999999987654222222222222222222 23678999999983 21 112234
Q ss_pred hhcCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH---HHHHHHHHcC--CeEEE
Q 048059 79 YYRGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE---EGEQFSQENG--MFYIE 151 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 151 (198)
++..+|++|+|||++++.+++ ....|+..+... ....|+++|+||+|+...+.+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 578899999999999987764 223555555443 246899999999999776666554 4566677776 89999
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhC
Q 048059 152 TSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
+||++|.|++++|++|.+.+.+..
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=7.8e-29 Score=200.42 Aligned_cols=164 Identities=21% Similarity=0.335 Sum_probs=126.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAV 87 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 87 (198)
...+||+|+|.+|||||||+++|+++.+. .+.+|.+.++.. + ....+.+.+|||+|++.+..++..+++++|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--E--ESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE--E--EeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999998744 455777755433 2 234567899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHH
Q 048059 88 VVYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~ 161 (198)
+|||++++++++.+..|+..+... ...+.|++||+||+|+.... ..++...... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 999999999999999888877653 23578999999999986533 2233222211 124569999999999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 048059 162 ELFYEIAKRLARVSPPK 178 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~~~ 178 (198)
++|++|.+.+.+..+..
T Consensus 473 ~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp HHHHHHHHHCC------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999998876665544
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=193.65 Aligned_cols=159 Identities=20% Similarity=0.328 Sum_probs=119.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
..+||+|+|.+|||||||+++|+++.+... .+|.+..+.. +....+.+.||||||++.+..++..++.++|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998775433 3555544322 23345789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCeEEEEccCCCCCHHH
Q 048059 89 VYDISNMDTFNRANKLVQELQRQ-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQ-----ENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~ 162 (198)
|||++++.+++.+..|+..+... ...+.|++||+||+|+..... .++...... ..+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999998777666553 335789999999999865432 222222221 1345799999999999999
Q ss_pred HHHHHHHHHHhh
Q 048059 163 LFYEIAKRLARV 174 (198)
Q Consensus 163 ~~~~l~~~~~~~ 174 (198)
+|++|.+.+.++
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=2.3e-28 Score=186.31 Aligned_cols=160 Identities=19% Similarity=0.301 Sum_probs=127.8
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh-----cccchhhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY---DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY-----HSLAPMYY 80 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~ 80 (198)
..+||+++|++|||||||+++|+++... ..+.+|.+..+.. +.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999986322 2455666665443 33333 678999999999988 77889999
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHh--CCCCceEEEEEeCCCCCC--CCC----CCHHHHHHHHHHcC---CeE
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQ--GNQIVVMALAANKSDLDS--QRE----VPTEEGEQFSQENG---MFY 149 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 149 (198)
+++|++|+|||++++++++.+..|...+... ..++.|+++++||+|+.. .+. +..+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 9999999999999999999987775555442 135789999999999875 343 55577888998887 799
Q ss_pred EEEccCCCCCHHHHHHHHHHHHH
Q 048059 150 IETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
+++||++ .++.++|..++..+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 889999999887553
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2.5e-28 Score=173.54 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=120.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC-----------chhhcccchhh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG-----------QERYHSLAPMY 79 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~ 79 (198)
+||+++|++|||||||+++|++..+...+.++.+.. ...+... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999988766665554433 2333333 578999999 67777788888
Q ss_pred hcC-CCeEEEEEECCChhhHHHH-HHHHHH--------H-HHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe
Q 048059 80 YRG-AAAAVVVYDISNMDTFNRA-NKLVQE--------L-QRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF 148 (198)
Q Consensus 80 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 148 (198)
+.+ +++++++|++.+..+++.+ ..|... + ........|+++|+||+|+...+ .+....++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 877 8877777777777788776 556542 2 22223568999999999986544 56778888888874
Q ss_pred -------EEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 149 -------YIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 149 -------~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
++++||++|.|++++|++|.+.+.+...+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999988776553
No 110
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=2.6e-29 Score=190.53 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=120.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---cchhhhcCCCe
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYD---QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---LAPMYYRGAAA 85 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~ 85 (198)
||+++|+.|||||||++++.++.... ...+|+|.++.. ++ ..+++++|||+|+++|.. .++.|++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 256788877643 22 347899999999999975 36899999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----cCCeEEEE
Q 048059 86 AVVVYDISNM--DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ-------REVPTEEGEQFSQE----NGMFYIET 152 (198)
Q Consensus 86 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 152 (198)
+|+|||+++. ++++.+..|+..+... .++.|+++++||+|+... +++..++++++++. ++++|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 2333333444444444 367999999999999754 34666777778875 68899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh
Q 048059 153 SAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 153 Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
||++ .+|.++|..+++.+.+.
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTT
T ss_pred ccCC-CcHHHHHHHHHHHHHhh
Confidence 9998 58999999999877654
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=5.8e-28 Score=171.53 Aligned_cols=160 Identities=19% Similarity=0.191 Sum_probs=122.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------ccchhhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------SLAPMYY 80 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~ 80 (198)
.+..++|+++|++|||||||+++|++..+.....++.+.+.....+...+ ..+.+|||||++.+. ..+..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence 34679999999999999999999998765444455555554455555543 678899999998764 3455555
Q ss_pred c--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059 81 R--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ 158 (198)
Q Consensus 81 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (198)
. .++++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. +....+++.++++++++||+++.
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 4 5999999999875 4555667666654 457999999999986544443 35677888889999999999999
Q ss_pred CHHHHHHHHHHHHHhhC
Q 048059 159 NINELFYEIAKRLARVS 175 (198)
Q Consensus 159 ~i~~~~~~l~~~~~~~~ 175 (198)
|++++|++|.+.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887655
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=4.9e-28 Score=172.83 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=109.8
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC----------chhhcccc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG----------QERYHSLA 76 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 76 (198)
....++|+|+|++|||||||+++|++..+.....++.+.+........+. .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34569999999999999999999998876555666666555444444443 578999999 77777778
Q ss_pred hhhhcCC---CeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH--HHHHH-HHHHcCCeEE
Q 048059 77 PMYYRGA---AAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT--EEGEQ-FSQENGMFYI 150 (198)
Q Consensus 77 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~ 150 (198)
..++..+ |++++|+|++++.++.... ++..+.. ...|+++|+||+|+...+.+.. +++.+ ++...+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 8888777 9999999999877766543 2222222 4579999999999876543321 22222 2223467999
Q ss_pred EEccCCCCCHHHHHHHHHHHHH
Q 048059 151 ETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
++||++|.|++++|++|.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 113
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.95 E-value=7.4e-28 Score=196.14 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=127.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEE------E--EeCCcEEEEEEEeCCCchhhcccch
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQI------L--SLSEATVKFDIWDTAGQERYHSLAP 77 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~D~~g~~~~~~~~~ 77 (198)
.....+||+++|.+|||||||+++|++..+...+.++.+.++.... + ...+..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456799999999999999999999998888778888888776542 1 1223457899999999999999999
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCC
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTA 157 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 157 (198)
.+++.+|++|+|||+++. +.+..|+..+.... .+.|+++|+||+|+...+.+..++...++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999998765 55677888887764 46899999999999887888888889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhC
Q 048059 158 QNINELFYEIAKRLARVS 175 (198)
Q Consensus 158 ~~i~~~~~~l~~~~~~~~ 175 (198)
.|+++++++|.+.+.+..
T Consensus 193 ~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp --CTTHHHHHHHHHTCTT
T ss_pred cCHHHHHHHHHHHHhccc
Confidence 999999999999887643
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=1.2e-27 Score=168.04 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=112.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------chhh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------APMY 79 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 79 (198)
..++|+|+|++|||||||+++|++.... ....++.+.++....+.+++. .+.+|||||.+.+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999986542 222333344444555666653 4789999998643211 1235
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
++++|++++|||++++.+++. ..|+..+......+.|+++|+||+|+..... .++...+++++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 789999999999999888763 4677777766556789999999999854221 11223467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 048059 160 INELFYEIAKRLA 172 (198)
Q Consensus 160 i~~~~~~l~~~~~ 172 (198)
++++|++|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=3.2e-27 Score=163.43 Aligned_cols=150 Identities=22% Similarity=0.184 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------hcccchhhhcC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER-------YHSLAPMYYRG 82 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 82 (198)
.||+++|++|||||||+++|.+..+. ....++.+.+.....+...+ ..+.+|||||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 12223333333344444444 3678999999876 34456677899
Q ss_pred CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCHH
Q 048059 83 AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNIN 161 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 161 (198)
+|++++|||.+++.+... ..+...+.. .+.|+++|+||+|+.... +++.+++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999987543322 122222222 357899999999986542 2334444 5677 89999999999999
Q ss_pred HHHHHHHHHH
Q 048059 162 ELFYEIAKRL 171 (198)
Q Consensus 162 ~~~~~l~~~~ 171 (198)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.5e-26 Score=172.15 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=117.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc------hhhh-
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA------PMYY- 80 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~- 80 (198)
...++|+++|++|||||||+++|++..+.....+..+.+.....+ ......+.+|||||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVF--TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEE--EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEE--EECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 457999999999999999999999877654444544433333333 3334678999999997766533 4555
Q ss_pred -cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 81 -RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 81 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
..+|++++|+|+++.++. ..|...+.. .+.|+++++||+|+...+.+.. ....+++.++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 589999999999986543 235544443 3579999999999865444432 36788888999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 048059 160 INELFYEIAKRLA 172 (198)
Q Consensus 160 i~~~~~~l~~~~~ 172 (198)
++++|++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998765
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.4e-26 Score=175.25 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=124.7
Q ss_pred CCCceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc-EEEEEEEeCCCchhhc---------
Q 048059 4 PGNKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA-TVKFDIWDTAGQERYH--------- 73 (198)
Q Consensus 4 ~~~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~--------- 73 (198)
.+++.+.-.|+++|.+|||||||+++|++..+.... +..+.+........... ..++.||||||.....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 345666789999999999999999999998764221 22222221221112222 5678899999985433
Q ss_pred -ccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEE
Q 048059 74 -SLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYI 150 (198)
Q Consensus 74 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 150 (198)
..+..++..+|++++|+|++++.+.+....|+..+.. .+.|+++|+||+|+........+....+...++ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 4566778899999999999998888887777777655 357999999999987445555677778888775 7899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhh
Q 048059 151 ETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
++||++|.|++++|++|...+.+.
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccC
Confidence 999999999999999999887554
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=2.8e-26 Score=163.47 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=113.6
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC----------chhhcccc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG----------QERYHSLA 76 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 76 (198)
....++|+|+|++|||||||+++|++.. .....++.+.+.......... .+.+||||| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHH
Confidence 3456899999999999999999999876 334445555554444433333 467999999 66777777
Q ss_pred hhhhcCC---CeEEEEEECCChhhH--HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHHHHHHHHc-CCe
Q 048059 77 PMYYRGA---AAAVVVYDISNMDTF--NRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEGEQFSQEN-GMF 148 (198)
Q Consensus 77 ~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~~ 148 (198)
..++..+ |++++|+|.++..+. ..+..|+.. .+.|+++|+||+|+.... ....++...++... +++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYT 169 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCc
Confidence 7787766 999999998775433 233334333 257999999999986432 22334555555553 479
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 149 YIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
++++||++|.|++++|++|.+.+.+
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999987754
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=1.1e-26 Score=173.86 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=115.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhc------ccchhhhc--
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYH------SLAPMYYR-- 81 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-- 81 (198)
.++|+++|++|||||||+++|++........+ |.++......+.. ...+.+|||||+..+. ..+..++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 57999999999999999999998764444434 3343344444454 5678899999997765 34455665
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (198)
++|++|+|+|+++.++. ..|...+.. .+.|+++++||+|+...+.+. .....++..++++++++||++|.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 69999999999876543 345555544 457999999999986444433 34677888899999999999999999
Q ss_pred HHHHHHHHHHH
Q 048059 162 ELFYEIAKRLA 172 (198)
Q Consensus 162 ~~~~~l~~~~~ 172 (198)
++|++|.+.+.
T Consensus 153 el~~~i~~~~~ 163 (272)
T 3b1v_A 153 QVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=1.3e-26 Score=172.17 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----------cchhhh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----------LAPMYY 80 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~ 80 (198)
.+|+++|++|||||||+++|++........++.+.+.....+...+. .+.+|||||...+.. .+..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988755555566555555555555553 788999999876653 445566
Q ss_pred --cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059 81 --RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ 158 (198)
Q Consensus 81 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (198)
.++|++|+|+|+++.++...+..++. ..+.|+++++||+|+...+... .....++..++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999998665544433322 2367999999999986444332 22456778889999999999999
Q ss_pred CHHHHHHHHHHH
Q 048059 159 NINELFYEIAKR 170 (198)
Q Consensus 159 ~i~~~~~~l~~~ 170 (198)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999876
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=2.8e-26 Score=167.09 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=111.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeC-CcEEEEEEEeCCCc----------hhhcccc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLS-EATVKFDIWDTAGQ----------ERYHSLA 76 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~----------~~~~~~~ 76 (198)
...++|+|+|.+|||||||+++|++.........+.+.+......... .....+.||||||. +.+...+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 446899999999999999999999876333333444444434444444 44567889999994 4445566
Q ss_pred hhhhcC---CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--HHHHHHHHHH-------
Q 048059 77 PMYYRG---AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP--TEEGEQFSQE------- 144 (198)
Q Consensus 77 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~------- 144 (198)
..++.. +|++++|+|.+++.+. ....|+..+.. ...|+++|+||+|+....... .+...+....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 666665 7789999999875332 22334444433 457999999999986533211 1122222222
Q ss_pred cCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 145 NGMFYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 145 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
.+++++++||++|.|++++|++|.+.+.+...+
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence 467899999999999999999999988665543
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=2e-25 Score=167.38 Aligned_cols=160 Identities=21% Similarity=0.192 Sum_probs=120.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc------cchhhh--
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS------LAPMYY-- 80 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~-- 80 (198)
+.++|+++|++|||||||+++|++..+.....++.+.+.....+...+ ..+.+|||||...+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 458999999999999999999998876555556666665555555544 4588999999877665 455555
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
.++|++++|+|+++.+ ....|...+... ...|+++++||+|+...+.... ....+++.++++++++||++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 6899999999998753 333344444443 2279999999999754333222 267788889999999999999999
Q ss_pred HHHHHHHHHHHHhhCC
Q 048059 161 NELFYEIAKRLARVSP 176 (198)
Q Consensus 161 ~~~~~~l~~~~~~~~~ 176 (198)
+++++++...+.....
T Consensus 154 ~~l~~~i~~~~~~~~~ 169 (271)
T 3k53_A 154 EELKRMIALMAEGKVT 169 (271)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999998765443
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=7e-26 Score=170.00 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=114.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc----------chh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL----------APM 78 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~ 78 (198)
..++|+++|++|||||||+++|++..+.....++.+.+.....+...+ ..+.+|||||...+... +..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 468999999999999999999998875545555555555455555444 45779999998766521 223
Q ss_pred hh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059 79 YY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT 156 (198)
Q Consensus 79 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (198)
++ .++|++|+|+|+++.+....+. ..+... +.|+++|+||+|+...+... .....+++.++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~---~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLT---LQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHH---HHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHH---HHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 33 6899999999998865544433 333332 57999999999985443332 234677788899999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 048059 157 AQNINELFYEIAKRLA 172 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~ 172 (198)
|.|+++++++|.+.+.
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999877554
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=2.3e-26 Score=167.02 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=107.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcC-
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG- 82 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~- 82 (198)
....++|+++|++|||||||+++|.+..+... +.++.+.+ .....+.+|||||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 34569999999999999999999998775432 22332222 144568899999999998888888877
Q ss_pred ---CCeEEEEEECC-ChhhHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCCCCCCCC------HHHHHHHHHHcCCe
Q 048059 83 ---AAAAVVVYDIS-NMDTFNRANKLVQELQRQ----GNQIVVMALAANKSDLDSQREVP------TEEGEQFSQENGMF 148 (198)
Q Consensus 83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 148 (198)
+|++|+|||++ ++.+++.+..|+..+... .....|+++|+||+|+...+.+. .+++..++...+++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888998888887777653 34678999999999997766543 45567777777888
Q ss_pred EEEEccCCCCC
Q 048059 149 YIETSAKTAQN 159 (198)
Q Consensus 149 ~~~~Sa~~~~~ 159 (198)
++++||++|.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998764
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=2e-24 Score=172.77 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=98.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc--------hhhh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA--------PMYY 80 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~ 80 (198)
.++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++ +.+.+|||||...+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 589999999999999999999986432 22333333333334444544 578899999987765443 3367
Q ss_pred cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 81 RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
.++|++++|||.+++.+++++..+...+... .+.|+++|+||+|+...... ....+......+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 8999999999999988775443333333332 26899999999998765432 223344433478999999999999
Q ss_pred HHHHHHHHHHHH
Q 048059 161 NELFYEIAKRLA 172 (198)
Q Consensus 161 ~~~~~~l~~~~~ 172 (198)
++++++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=2e-24 Score=171.93 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=113.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc----------hhhcccch
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ----------ERYHSLAP 77 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~ 77 (198)
..+||+++|.+|||||||+++|++.... ....++.+.+.....+..++. .+.||||||+ +.|.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4589999999999999999999987643 223333333333334444443 5789999998 44443333
Q ss_pred -hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHH-HHHH----cCCeEEE
Q 048059 78 -MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQ-FSQE----NGMFYIE 151 (198)
Q Consensus 78 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~ 151 (198)
.+++.+|++++|+|++++.+.+.. .|+..+.. .+.|+++++||+|+.+.+....++..+ +... .++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 477889999999999998877665 46655544 457999999999997665544333322 2222 3679999
Q ss_pred EccCCCCCHHHHHHHHHHHHHhhC
Q 048059 152 TSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 152 ~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
+||++|.|++++|+.+.+.+....
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EecccCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998877654
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=5.9e-25 Score=166.80 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=107.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh--------hcccchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER--------YHSLAPM 78 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~ 78 (198)
....+|+|+|.+|||||||+++|++..+.. ...+.......... ......++.||||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i--~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGI--LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEE--EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEE--EEeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456789999999999999999999877642 22222111211112 223456789999999865 3445667
Q ss_pred hhcCCCeEEEEEECCChhhHHHHHHHH-HHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCeEEEEccC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNRANKLV-QELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN--GMFYIETSAK 155 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~ 155 (198)
+++.+|++++|||++++.+.. ..|+ ..+.... .+.|+++|+||+|+..... ........+ ..+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCC
Confidence 789999999999998764433 2333 4444332 4689999999999864322 022233332 3478999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048059 156 TAQNINELFYEIAKRLAR 173 (198)
Q Consensus 156 ~~~~i~~~~~~l~~~~~~ 173 (198)
+|.|+++++++|...+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 156 DERQVAELKADLLALMPE 173 (301)
T ss_dssp CHHHHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999876643
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=3e-24 Score=171.73 Aligned_cols=164 Identities=20% Similarity=0.149 Sum_probs=118.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC----------chhhcccc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG----------QERYHSLA 76 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~ 76 (198)
...++|+++|.+|+|||||+++|++... .....++.+.+.....+...+. .+.|||||| ++.+...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3468999999999999999999997542 2223333333332334444443 688999999 56666655
Q ss_pred h-hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCeEE
Q 048059 77 P-MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQEN-----GMFYI 150 (198)
Q Consensus 77 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~ 150 (198)
. .+++.+|++|+|+|+++..+ ++...|+..+.. .+.|+++|+||+|+...+....++..+.+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 5 37789999999999987543 333445555544 45799999999999877777667777776654 58999
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 151 ETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
++||++|.|++++|+++.+.+......
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988766543
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.5e-23 Score=162.83 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=117.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc---------cchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---------LAPM 78 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~ 78 (198)
...++|+++|.+|||||||+++|++........+..........+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 346899999999999999999999876432222222222222222222 45688999999753211 1123
Q ss_pred hhcCCCeEEEEEECCChh--hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059 79 YYRGAAAAVVVYDISNMD--TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT 156 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (198)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+..... .++...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998876 67777888888877543 689999999999865332 2445667777889999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 048059 157 AQNINELFYEIAKRLARV 174 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (198)
|+|+++++++|.+.+.+.
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999987654
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1e-24 Score=171.77 Aligned_cols=159 Identities=14% Similarity=0.139 Sum_probs=114.5
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc-------chh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL-------APM 78 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~ 78 (198)
....++|+|+|.+|+|||||+++|++..+. ....+..+.+.....+...+.. .+.+|||||++.+..+ +..
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 445699999999999999999999987653 2222333333334445555442 6889999999876654 344
Q ss_pred hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCC
Q 048059 79 YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQ 158 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (198)
++.++|++|+|||++.. +....|+..+... +.|+++|+||+|+...... +....++..++++++++||++|.
T Consensus 110 ~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred HHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCC
Confidence 78899999999998332 3345566666554 5799999999999765554 66677777889999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 048059 159 NINELFYEIAKRLARV 174 (198)
Q Consensus 159 ~i~~~~~~l~~~~~~~ 174 (198)
|++++|++|.+.+.+.
T Consensus 182 gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 182 GFDDIGKTISEILPGD 197 (423)
T ss_dssp STTTHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHhhhhh
Confidence 9999999999988554
No 131
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=8.7e-24 Score=163.13 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=100.6
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----------hhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----------MDTFNRANKLVQELQRQ-GNQIVVMALAANKSD 126 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D 126 (198)
.+.+.+||++|++.++..|..++++++++|||||+++ ..++++...|+..+... ...+.|++|++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5788999999999999999999999999999999998 45688888888887764 336789999999999
Q ss_pred CCCCC---------------CCCHHHHHHHHH-----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 127 LDSQR---------------EVPTEEGEQFSQ-----------ENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 127 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
+...+ .++.+++..++. ..++.++++||+++.||+++|+++.+.+.+.+.
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 84221 356788888886 356789999999999999999999999987654
No 132
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=2.3e-22 Score=158.73 Aligned_cols=162 Identities=17% Similarity=0.154 Sum_probs=106.8
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCCCC--CcceeEEEEEEEe-------------C--C----cEEEE
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ---FYDQQEP--TIGAAFFTQILSL-------------S--E----ATVKF 61 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (198)
.+...++|+++|+.++|||||+++|++.. +..+..+ |+...+....+.. . + ....+
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence 44567999999999999999999998543 2223323 4444443333211 1 1 13689
Q ss_pred EEEeCCCchhhcccchhhhcCCCeEEEEEECCCh----hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCH
Q 048059 62 DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM----DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPT 135 (198)
Q Consensus 62 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~ 135 (198)
.||||||++.|.......+..+|++|+|+|++++ ++.+.+. .+... ...|+++++||+|+..... ...
T Consensus 84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHHHHHH
Confidence 9999999999887777778889999999999853 3444333 22222 2347999999999975443 234
Q ss_pred HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 136 EEGEQFSQE---NGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
+++.++... .+++++++||++|.|+++++++|...+..
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 566666664 36789999999999999999999886654
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1.2e-22 Score=160.24 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=116.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEE-------------------E---eCCcEEEEEE
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQIL-------------------S---LSEATVKFDI 63 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~~~~l 63 (198)
.....++|+++|++++|||||+++|++....... +........ . .......+.+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL----GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS----EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCccccccc----CccccceeeccccccccceecccccccccccccccccceEEE
Confidence 4456799999999999999999999975422211 100000000 0 0112367999
Q ss_pred EeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHH
Q 048059 64 WDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQF 141 (198)
Q Consensus 64 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~ 141 (198)
|||||++.|...+..++..+|++|+|+|++++.++.+...|+..+.... ..|+++++||+|+...... ..++..++
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998776777777777665543 2489999999998643211 11222222
Q ss_pred HHHc---CCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 142 SQEN---GMFYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 142 ~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
.... +++++++||++|.|+++++++|...+....
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 2222 678999999999999999999988765433
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=7.7e-24 Score=162.88 Aligned_cols=157 Identities=21% Similarity=0.213 Sum_probs=116.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCcceeEEEEEEEeCCcEEEEEEEeCCCchh----hcccchhhh---cC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQE--PTIGAAFFTQILSLSEATVKFDIWDTAGQER----YHSLAPMYY---RG 82 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~ 82 (198)
+|+|+|.+|||||||+++|++........ .|...+ ...+.+.+ ...+.+|||||... +..+...++ ..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 68899999999999999999765332222 222222 22333443 24688999999643 333445554 45
Q ss_pred CCeEEEEEECCC---hhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccC
Q 048059 83 AAAAVVVYDISN---MDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSAK 155 (198)
Q Consensus 83 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~ 155 (198)
++++|+|+|+++ +.+++.+..|+..+..... ...|+++|+||+|+... .+....++..++ ++++++||+
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECC
Confidence 999999999988 7889999999998887642 47899999999998642 244566777766 689999999
Q ss_pred CCCCHHHHHHHHHHHHHhhC
Q 048059 156 TAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 156 ~~~~i~~~~~~l~~~~~~~~ 175 (198)
++.|+++++++|.+.+.+..
T Consensus 313 tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSCC
T ss_pred CCcCHHHHHHHHHHHHhhCc
Confidence 99999999999999886543
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=3.3e-23 Score=165.87 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch-hhcc--------cchhh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE-RYHS--------LAPMY 79 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~~ 79 (198)
.++|+|+|.+|+|||||+|+|++.... ....+..+.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987532 33334334444444555554 468899999987 5432 23456
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
+.++|++|+|||++++.+++..+ +++.+ ...|+++|+||+|+... ...++...+.. .+++++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 78999999999999887776543 22332 35799999999998643 34455544432 457899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 048059 160 INELFYEIAKRLAR 173 (198)
Q Consensus 160 i~~~~~~l~~~~~~ 173 (198)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999997654
No 136
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=2.1e-22 Score=161.78 Aligned_cols=159 Identities=18% Similarity=0.128 Sum_probs=110.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCC----C---CCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQ----F---YDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPM 78 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 78 (198)
..+..++|+++|++++|||||+++|++.. . ..+..+.+..+.....+.++ ...+.+|||||++.|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHH
Confidence 44668999999999999999999999765 1 12222222222112222333 367899999999999888888
Q ss_pred hhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHHHHHHHHc----CCeE
Q 048059 79 YYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEGEQFSQEN----GMFY 149 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~----~~~~ 149 (198)
.+..+|++|+|+|+++ +++.+.+. .+.. .+.|+++++||+|+.... +...++..++.... ++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 9999999999999987 44433332 2222 246779999999986421 11233445555554 5789
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHh
Q 048059 150 IETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 150 ~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
+++||++|.|+++++++|...+..
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhcC
Confidence 999999999999999999998763
No 137
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=7.7e-23 Score=150.62 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=107.0
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCCcEEEEEEEeCCCc-----------hhh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSEATVKFDIWDTAGQ-----------ERY 72 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~ 72 (198)
+....++|+|+|++|||||||+++|++........+ +.+...........+ ..+.+|||||. ..+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence 345579999999999999999999999877554444 222333233333333 46789999994 234
Q ss_pred cccchhhhcCCCeEEEEEECCChhh--HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC------HHHHHHHHHH
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDT--FNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP------TEEGEQFSQE 144 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~------~~~~~~~~~~ 144 (198)
...+..++.++|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+..+.+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4455556678999999999875433 22223333333222 235899999999986544332 2467788888
Q ss_pred cCCeEEEEccCCC-----CCHHHHHHHHHHHHHhhC
Q 048059 145 NGMFYIETSAKTA-----QNINELFYEIAKRLARVS 175 (198)
Q Consensus 145 ~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~~~ 175 (198)
.+..++.++...+ .++.++|..+...+.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 8888888877754 689999998887776543
No 138
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=8.9e-23 Score=155.46 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=99.5
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC----------ChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS----------NMDTFNRANKLVQELQRQ-GNQIVVMALAANKS 125 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~ 125 (198)
+.+.+++||++|++.++..|.+++++++++|||||++ +..++++...|+..+... ...+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 4578999999999999999999999999999999665 566777777777777653 33678999999999
Q ss_pred CCCCCC----------------CCCHHHHHHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 126 DLDSQR----------------EVPTEEGEQFSQ----------ENGMFYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 126 Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
|+..++ ..+.+++.+++. ..++.++++||+++.||+.+|..+.+.+.+.+-.
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~ 322 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 322 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHH
Confidence 984322 467788888843 4567889999999999999999999999887643
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.5e-22 Score=161.18 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh---------hcccchhhh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER---------YHSLAPMYY 80 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 80 (198)
.+|+|+|.||||||||+|+|++.... ....+..+.+.....+...+ ..+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999987643 22223333333344444444 3578999999753 344567788
Q ss_pred cCCCeEEEEEECCChhhHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHH-HHHHHHcCC-eEEEEccCC
Q 048059 81 RGAAAAVVVYDISNMDTFNR--ANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEG-EQFSQENGM-FYIETSAKT 156 (198)
Q Consensus 81 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 156 (198)
+++|++|+|+|++++.+..+ +..|+. . .+.|+++|+||+|+... . .... .++. .+++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987544332 233332 2 24689999999997431 1 1222 3333 4566 789999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 048059 157 AQNINELFYEIAKRLARV 174 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~~~ 174 (198)
|.|++++++++...+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999988754
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=7.1e-23 Score=152.59 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=103.6
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc-------
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPT-IGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA------- 76 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------- 76 (198)
+....++|+|+|++|||||||+++|++... .....++ .+.+......... ...+.||||||...+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345579999999999999999999998763 3333332 2223223333333 3568899999986543322
Q ss_pred ----hhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEe-CCCCCCCCCCCH-------HHHHHHHH
Q 048059 77 ----PMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAAN-KSDLDSQREVPT-------EEGEQFSQ 143 (198)
Q Consensus 77 ----~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~n-K~Dl~~~~~~~~-------~~~~~~~~ 143 (198)
..+++.+|++|+|+|+++.... ..+..++..+.... ...|+++++| |+|+... .+.. +.+..+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHH
Confidence 2366889999999999862222 22223333322111 1345555555 9998643 2211 22444555
Q ss_pred HcCCe---E--EEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 144 ENGMF---Y--IETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 144 ~~~~~---~--~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
..+.. + +++||+++.|++++|++|.+.+.+..
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 55543 2 78999999999999999999887643
No 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=6.8e-22 Score=153.41 Aligned_cols=165 Identities=17% Similarity=0.061 Sum_probs=109.9
Q ss_pred eeE-EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------hhcccchhh
Q 048059 10 QAK-LVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------RYHSLAPMY 79 (198)
Q Consensus 10 ~~~-i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~ 79 (198)
.++ |+++|++|||||||+++|++........+....+.....+.+++ ..+.+|||+|.- .+...++ .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 355 99999999999999999998765332222222233345555665 467899999962 2222222 4
Q ss_pred hcCCCeEEEEEECCChh--hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC-CHHHHHHHHHHc---CCeEEEEc
Q 048059 80 YRGAAAAVVVYDISNMD--TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-PTEEGEQFSQEN---GMFYIETS 153 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~S 153 (198)
+..+|++++|+|++++. ..+.+..|...+........|+++|+||+|+...... ..+.+..++..+ +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 68899999999998876 5666666776666654467899999999998643210 011233334444 34689999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 154 AKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 154 a~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
|+++.|+++++++|.+.+......
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHhcccCCC
Confidence 999999999999999887765543
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=2.6e-23 Score=165.49 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=101.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch--------hhcccchhhhc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE--------RYHSLAPMYYR 81 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~ 81 (198)
..+|+++|.+|||||||+++|++.... ...++.|.+..............+.+|||||.+ .+...+..+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 368999999999999999999986643 234455665555555555555678999999985 56677888899
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCCCCCH
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKTAQNI 160 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 160 (198)
++|++|+|+|++++.+... .++..+.. ..+.|+++|+||+|+...... ..++. .+++ .++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999987665443 22222222 246799999999998643211 11122 3455 7899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 048059 161 NELFYEIAKRLARV 174 (198)
Q Consensus 161 ~~~~~~l~~~~~~~ 174 (198)
+++++++.+.+.+.
T Consensus 153 ~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 153 GDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999887643
No 143
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=3e-22 Score=148.09 Aligned_cols=170 Identities=12% Similarity=0.105 Sum_probs=105.7
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCc--------hhhcccchh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQ--------ERYHSLAPM 78 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~ 78 (198)
....++|+|+|.+|||||||+++|++........++.+.+..............+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 456799999999999999999999987765443333233322222222333466889999996 222222323
Q ss_pred hh----cCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCC
Q 048059 79 YY----RGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANKSDLDSQREV------PTEEGEQFSQENGM 147 (198)
Q Consensus 79 ~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~------~~~~~~~~~~~~~~ 147 (198)
++ .++|++|+|+|+++.... ..+..++..+......+.|+++++||.|+...... ..+..+.+....+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCC
Confidence 33 899999999999753221 12223333322222236799999999998643211 11345777777888
Q ss_pred eEEEEccCC-----CCCHHHHHHHHHHHHHhhCC
Q 048059 148 FYIETSAKT-----AQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 148 ~~~~~Sa~~-----~~~i~~~~~~l~~~~~~~~~ 176 (198)
.++.++... +.|+.++++.|.+.+.+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 178 RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 887777655 57899999999887776543
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=4.5e-23 Score=164.40 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=101.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccch--------hh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAP--------MY 79 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~--------~~ 79 (198)
..++|+++|++|+|||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||...+...++ .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3589999999999999999999986433 23334333333333444444 4678999999866544333 35
Q ss_pred hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQN 159 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 159 (198)
+.++|++++|+|.+++.+.+. ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998766544 44544442 25999999999986544332 111111 356899999999999
Q ss_pred HHHHHHHHHHHHHhhC
Q 048059 160 INELFYEIAKRLARVS 175 (198)
Q Consensus 160 i~~~~~~l~~~~~~~~ 175 (198)
+++++++|.+.+....
T Consensus 371 i~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 371 IDSLETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999886544
No 145
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=4.1e-22 Score=162.99 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=111.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CC------CCCcceeEEEEEEEe-----CCcEEEEEEEeCCCchh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ--FYD-----QQ------EPTIGAAFFTQILSL-----SEATVKFDIWDTAGQER 71 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~ 71 (198)
-.||+|+|+.++|||||+++|+... ... .. ....|.+.......+ ++..+.+.||||||+..
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 4799999999999999999998621 110 00 011233332222222 45578999999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCe---
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMF--- 148 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 148 (198)
|...+..++..+|++|+|+|+++..+.+....|..... .+.|+++++||+|+...+ ..+...++...+++.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998777777777765542 357999999999986543 234456666666764
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 149 YIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
++++||++|.|+++++++|.+.+...
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred EEEeecccCCCchhHHHHHhhcCCCc
Confidence 89999999999999999999877543
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1.1e-21 Score=154.98 Aligned_cols=162 Identities=17% Similarity=0.143 Sum_probs=112.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CcceeEEEEEEEe-------------C--C----cEEEE
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQF---YDQQEP--TIGAAFFTQILSL-------------S--E----ATVKF 61 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 61 (198)
.+...++|+++|+.++|||||+++|++... ..+..+ |+...+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 346679999999999999999999996432 222223 4444443333211 0 1 13679
Q ss_pred EEEeCCCchhhcccchhhhcCCCeEEEEEECCCh----hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC--CCH
Q 048059 62 DIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNM----DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE--VPT 135 (198)
Q Consensus 62 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~ 135 (198)
.||||||++.|.......+..+|++|+|+|+++. ++.+.+.. +... ...|+++++||+|+..... ...
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHH
Confidence 9999999999887777778889999999999853 34443332 2222 2247999999999865321 122
Q ss_pred HHHHHHHHH---cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 136 EEGEQFSQE---NGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
+++.++... .+++++++||++|.|+++++++|...+..
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 344555543 36789999999999999999999886654
No 147
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=1.5e-22 Score=153.68 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=107.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch---------hhcccch
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE---------RYHSLAP 77 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~ 77 (198)
....+|+|+|++|+|||||+++|++..... ...+..........+ .....++.+|||||.. .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~--~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH--TEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE--EETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE--EECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 345689999999999999999999876431 111211111111112 2234578899999986 2344556
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKT 156 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (198)
.++..+|++++|+|.++ +.....|+..... ..+.|+++++||+|+...+....+....+...+++ .++++||++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 77889999999999976 3223333322222 24679999999999865222223445566666676 799999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048059 157 AQNINELFYEIAKRLAR 173 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~~ 173 (198)
+.|++++++.+...+.+
T Consensus 159 g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhCCc
Confidence 99999999999876543
No 148
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.88 E-value=3.2e-22 Score=154.34 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=95.1
Q ss_pred cEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC----------ChhhHHHHHHHHHHHHHh-CCCCceEEEEEeCC
Q 048059 57 ATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS----------NMDTFNRANKLVQELQRQ-GNQIVVMALAANKS 125 (198)
Q Consensus 57 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~ 125 (198)
..+.+++|||+|++.++..|..++++++++|||||++ +..+++....|+..+... ...+.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5788999999999999999999999999999999998 778899998888888764 23678999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEEccCCCCCHHHHHHHHH
Q 048059 126 DLDSQRE--V-------------------PTEEGEQFSQE----------------NGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 126 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|+..++. + +.+++..++.. ..+.++++||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 24666666443 234578999999999999999999
Q ss_pred HHHHhhC
Q 048059 169 KRLARVS 175 (198)
Q Consensus 169 ~~~~~~~ 175 (198)
+.+.+.+
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=1.8e-21 Score=158.92 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=114.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----CCCC------CcceeEE----EEEEEe-CCcEEEEEEEeCCCc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG--QFYD-----QQEP------TIGAAFF----TQILSL-SEATVKFDIWDTAGQ 69 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~--~~~~-----~~~~------~~~~~~~----~~~~~~-~~~~~~~~l~D~~g~ 69 (198)
....||+++|+.++|||||+++|+.. .... .... ..|.+.. ...+.. ++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 34579999999999999999999852 1110 0000 1111211 111221 455688999999999
Q ss_pred hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--
Q 048059 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-- 147 (198)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 147 (198)
..|...+..++..+|++|+|+|+++..+.+....|..... .+.|+++++||+|+.... ..+...++...+++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999889999999999999999998877777777765542 457899999999986543 23344566666676
Q ss_pred -eEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 148 -FYIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 148 -~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
.++++||++|.|+++++++|++.+...
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 489999999999999999999877543
No 150
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=7.8e-22 Score=156.88 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=104.6
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCCcceeEEEEEEEe
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFY-------------------------------DQQEPTIGAAFFTQILSL 54 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 54 (198)
+....++|+++|++++|||||+++|++.... .+.. .|.+.......+
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~--~GiTid~~~~~~ 90 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD--KGKTVEVGRAYF 90 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhh--cCceEEEeEEEE
Confidence 3456799999999999999999999653110 0111 233333344444
Q ss_pred CCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCce-EEEEEeCCCC
Q 048059 55 SEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVV-MALAANKSDL 127 (198)
Q Consensus 55 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 127 (198)
......+.||||||+++|......++..+|++|+|+|+++... + .+....+..+.. ...| +++++||+|+
T Consensus 91 ~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 91 ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDD 167 (439)
T ss_pred ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCC
Confidence 4455689999999999999999999999999999999987532 1 122222222222 2344 8999999998
Q ss_pred CCCC------CCCHHHHHHHHHHcC------CeEEEEccCCCCCHHHHHH
Q 048059 128 DSQR------EVPTEEGEQFSQENG------MFYIETSAKTAQNINELFY 165 (198)
Q Consensus 128 ~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~ 165 (198)
.... ....++...+.+.++ ++++++||++|.|+.++++
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 168 PTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 5321 111233444554444 5799999999999999765
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=3.5e-22 Score=160.78 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=99.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCC--CC---------------------------CCCCCcceeEEEEEEEeCCcE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQF--YD---------------------------QQEPTIGAAFFTQILSLSEAT 58 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 58 (198)
...+||+++|.+++|||||+++|++... .. ......|.+.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4569999999999999999999986411 00 000111333333333344455
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHH------HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN------RANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
..+.||||||+++|......++.++|++|+|+|++++.+.. +....+..+... ...|+++++||+|+...++
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchH
Confidence 67899999999999999999999999999999999865432 222222222222 2347999999999875433
Q ss_pred CCHHHHH----HHHHHc-----CCeEEEEccCCCCCHHH
Q 048059 133 VPTEEGE----QFSQEN-----GMFYIETSAKTAQNINE 162 (198)
Q Consensus 133 ~~~~~~~----~~~~~~-----~~~~~~~Sa~~~~~i~~ 162 (198)
...++.. .+.... +++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 3233333 333332 46899999999999874
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.6e-23 Score=161.49 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=94.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CC--------CCCcceeEEEEEEEeCCcEEEEEEEeCCCc-------hh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQ--------EPTIGAAFFTQILSLSEATVKFDIWDTAGQ-------ER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 71 (198)
...++|+|+|++|+|||||+++|++..... .+ .++.+.......+...+..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 346899999999999999999987653322 22 134343333333444555678999999998 66
Q ss_pred hcccch-------hhhcCCCeE-----------EEEEECCC-hhhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 72 YHSLAP-------MYYRGAAAA-----------VVVYDISN-MDTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 72 ~~~~~~-------~~~~~~d~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
+..++. .++.+++++ +++|++++ ..++..+. .|+..+ ....|+++|+||+|+...+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 666665 566544332 35555543 34454443 344333 3568999999999987544
Q ss_pred CCCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCCC
Q 048059 132 EVPT--EEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSPP 177 (198)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 177 (198)
++.. +.+..++..++++++++||+++.+ ++.|.++...+.+..+.
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 4333 456677777899999999999999 99999999998877664
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=7.4e-23 Score=153.62 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=93.1
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-C-------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchh-------
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ-Q-------EPTIGAAFFTQILSLSEATVKFDIWDTAGQER------- 71 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 71 (198)
....++|+|+|.+|+|||||+|+|++...... + .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 44579999999999999999999887554332 2 45556665555555556667899999999732
Q ss_pred hcccc-------hhhhc-------------CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 72 YHSLA-------PMYYR-------------GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 72 ~~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
+..+. ..++. .+|+++++++.+.....+.-..++..+.. ..|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22222 33333 37789999876542211222334444432 68999999999975322
Q ss_pred CC--CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 132 EV--PTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
+. ..+.+.+.....+++++++||++++|+++++++|.+.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 21 112344455567899999999999999999999887543
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-22 Score=143.01 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=89.1
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcC-
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ---QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRG- 82 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~- 82 (198)
....++|+|+|++|||||||+++|++..+... ..++.+. ......+.+|||||++.+...+..++.+
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 34568999999999999999999998765431 1222211 1134568899999999988888888876
Q ss_pred ---CCeEEEEEECC-ChhhHHHHHHHHHHHHHh----CCCCceEEEEEeCCCCCCCCC
Q 048059 83 ---AAAAVVVYDIS-NMDTFNRANKLVQELQRQ----GNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 83 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
+|++|+|||++ +.++++.+..|+..+... .....|+++|+||+|+.....
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999988887776553 335789999999999876554
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=3e-21 Score=153.73 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=105.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccc-----------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLA----------- 76 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------- 76 (198)
..++|+|+|++|||||||+++|++.... ....+..+.+.....+.+++. .+.+|||+|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999986532 122222222222334445554 57899999975432211
Q ss_pred -hhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH-HHHH----HcCCeEE
Q 048059 77 -PMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE-QFSQ----ENGMFYI 150 (198)
Q Consensus 77 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~ 150 (198)
..++..+|++++++|+++..+.+.. .+...+.. ...|+++++||+|+.+.+....++.. .+.. ..+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999876655442 22233322 45799999999998765443333332 2222 2357899
Q ss_pred EEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 151 ETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
++||++|.|++++|+.+.+.+....
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999998776654
No 156
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=1.8e-21 Score=151.92 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=96.8
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----------hhhHHHHHHHHHHHHHh-CCCCceEEEEEeCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----------MDTFNRANKLVQELQRQ-GNQIVVMALAANKSD 126 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D 126 (198)
.+.+++|||+|++.++..|..++++++++|||||+++ ..+++....|+..+... ...+.|++|++||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 3789999999999999999999999999999999998 88999999999988775 346789999999999
Q ss_pred CCCCCC---C---------------------------CHHHHHHHHH-----H--------cCCeEEEEccCCCCCHHHH
Q 048059 127 LDSQRE---V---------------------------PTEEGEQFSQ-----E--------NGMFYIETSAKTAQNINEL 163 (198)
Q Consensus 127 l~~~~~---~---------------------------~~~~~~~~~~-----~--------~~~~~~~~Sa~~~~~i~~~ 163 (198)
+...+. + +.+++..|+. . .++.++++||+++.||+++
T Consensus 296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v 375 (402)
T 1azs_C 296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 375 (402)
T ss_dssp HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence 843211 1 1355666532 1 2567889999999999999
Q ss_pred HHHHHHHHHhhC
Q 048059 164 FYEIAKRLARVS 175 (198)
Q Consensus 164 ~~~l~~~~~~~~ 175 (198)
|.++.+.+.+.+
T Consensus 376 F~~v~~~I~~~~ 387 (402)
T 1azs_C 376 FNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
No 157
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=7.2e-22 Score=150.99 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=96.3
Q ss_pred CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECC----------ChhhHHHHHHHHHHHHHh-CCCCceEEEEEeC
Q 048059 56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDIS----------NMDTFNRANKLVQELQRQ-GNQIVVMALAANK 124 (198)
Q Consensus 56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK 124 (198)
.+.+.+++||++|++.++..|..++++++++|||||++ +..++++...|+..+... ...+.|+++++||
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 34578899999999999999999999999999999998 677888888888777664 3367899999999
Q ss_pred CCCCCC---------------CCCCHHHHHHHHHH-c--------------------------CCeEEEEccCCCCCHHH
Q 048059 125 SDLDSQ---------------REVPTEEGEQFSQE-N--------------------------GMFYIETSAKTAQNINE 162 (198)
Q Consensus 125 ~Dl~~~---------------~~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~ 162 (198)
+|+..+ ...+.+++.+++.. . .+.++++||+++.||+.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 997321 11246666555542 2 36789999999999999
Q ss_pred HHHHHHHHHHh
Q 048059 163 LFYEIAKRLAR 173 (198)
Q Consensus 163 ~~~~l~~~~~~ 173 (198)
+|..+.+.+++
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998887
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=1.2e-21 Score=155.69 Aligned_cols=155 Identities=21% Similarity=0.220 Sum_probs=104.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC----------CCCCc-------------------ceeEEEEEEEeC
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQF--YDQ----------QEPTI-------------------GAAFFTQILSLS 55 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~--~~~----------~~~~~-------------------~~~~~~~~~~~~ 55 (198)
....++|+++|++++|||||+++|++... ... ...+. |.+.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 34569999999999999999999986431 000 00111 111111222233
Q ss_pred CcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--
Q 048059 56 EATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV-- 133 (198)
Q Consensus 56 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-- 133 (198)
.....+.||||||++.|...+..++..+|++|+|+|++++.. .+...++..+... ...|+++++||+|+......
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHH
Confidence 345678999999999998888889999999999999987542 3333444444332 22379999999998652211
Q ss_pred --CHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHH
Q 048059 134 --PTEEGEQFSQENG-----MFYIETSAKTAQNINELF 164 (198)
Q Consensus 134 --~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~ 164 (198)
..++...+++.++ ++++++||++|.|+++++
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 2344556666677 689999999999998853
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=2.2e-23 Score=168.23 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVV 89 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 89 (198)
..+|+++|++++|||||+++|.+..+.....++++.++....+... ....+.||||||++.|..++..++..+|++|+|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 5789999999999999999999765544444444333322222221 223688999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC-CCHHHHHHH---HHHc--CCeEEEEccCCCCCHHHH
Q 048059 90 YDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE-VPTEEGEQF---SQEN--GMFYIETSAKTAQNINEL 163 (198)
Q Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~~ 163 (198)
+|+++....+..+.| ..+. ..+.|+++++||+|+..... ....+...+ +..+ .++++++||++|.|++++
T Consensus 83 VDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 83 VAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp CBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 999886544333322 2222 24579999999999864321 111222221 1111 357999999999999999
Q ss_pred HHHHHHHHHh
Q 048059 164 FYEIAKRLAR 173 (198)
Q Consensus 164 ~~~l~~~~~~ 173 (198)
+++|...+..
T Consensus 159 le~I~~l~~~ 168 (537)
T 3izy_P 159 AEATIALAEM 168 (537)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhc
Confidence 9999887653
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=5.6e-23 Score=163.46 Aligned_cols=157 Identities=17% Similarity=0.230 Sum_probs=104.4
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCC---------------------------CCCcceeEEEEEEEeCCcE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG--QFYDQQ---------------------------EPTIGAAFFTQILSLSEAT 58 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 58 (198)
...+||+++|++++|||||+++|++. .+.... ....+.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45699999999999999999999864 221100 0011122222222344445
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC-----CCCceEEEEEeCCCCCCCC--
Q 048059 59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG-----NQIVVMALAANKSDLDSQR-- 131 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~Dl~~~~-- 131 (198)
..+.||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|......+. ....|+++++||+|+....
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 678999999999999888899999999999999988 67765433322222110 1224688999999986521
Q ss_pred ----CCCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHHHH
Q 048059 132 ----EVPTEEGEQFSQENG-----MFYIETSAKTAQNINELFY 165 (198)
Q Consensus 132 ----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 165 (198)
....+++..++...+ ++++++||++|.|+.+++.
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345666666665 6899999999999986654
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=2.4e-22 Score=160.73 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=102.9
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCC--------chhhcccch
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAG--------QERYHSLAP 77 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~ 77 (198)
..+...+|+|+|.+|||||||+++|++.... ....+.|.+..............+.+||||| ++.+...+.
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 4455689999999999999999999986643 2334556666566666666667899999999 677778888
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-eEEEEccCC
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGM-FYIETSAKT 156 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 156 (198)
.+++++|++|+|+|..+..+. ...|+..+... .+.|+++|+||+|+..... ...++. .++. .++++||++
T Consensus 98 ~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred hhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeeccc
Confidence 899999999999998764322 22233333222 5679999999999854321 111111 2233 467999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048059 157 AQNINELFYEIAKRLAR 173 (198)
Q Consensus 157 ~~~i~~~~~~l~~~~~~ 173 (198)
|.|+.++++++.+.+.+
T Consensus 169 g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp CTTHHHHHHHHHTTGGG
T ss_pred ccchHHHHHHHHhhccc
Confidence 99999999999887654
No 162
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=8.5e-22 Score=159.40 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=82.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------CCC---CCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY-----------------DQQ---EPTIGAAFFTQILSLSEATVKFDIWDTA 67 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~-----------------~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 67 (198)
....+|+|+|++|+|||||+++|+..... ... ....|.+.......+....+.+.|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 34689999999999999999999621100 000 0001112222223333345778999999
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
|+..+...+..+++.+|++|+|+|+++..+.+....|. .+.. .+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999876666555443 2322 4579999999999854
No 163
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.2e-20 Score=154.39 Aligned_cols=161 Identities=24% Similarity=0.178 Sum_probs=108.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCCcceeEEEEEE------------EeCCcEEEEEEEeCCCchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ----QEPTIGAAFFTQIL------------SLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~ 71 (198)
...++|+|+|++++|||||+++|++...... ..++++..+..... .+......+.||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3467999999999999999999987543221 11233333221110 0001122588999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCC---hhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC-------------H
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISN---MDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP-------------T 135 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-------------~ 135 (198)
|..++..++..+|++|+|||+++ +++++.+.. +.. .+.|+++++||+|+....... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999999999999999999998 566554432 222 457999999999986432110 0
Q ss_pred ---H-------HHHHHHHHc---------------CCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 136 ---E-------EGEQFSQEN---------------GMFYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 136 ---~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
+ +........ .++++++||++|.|+++++++|...+....
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 111111111 237999999999999999999998776443
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=1.5e-21 Score=153.53 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=109.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQ-------FYDQ-------QEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS 74 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 74 (198)
..+||+++|++++|||||+++|++.. +... .....|.+.......+......+.||||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 36899999999999999999998731 0000 001123333333344444556788999999999988
Q ss_pred cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCC---CCHHHHHHHHHHcC----
Q 048059 75 LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQRE---VPTEEGEQFSQENG---- 146 (198)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~~---- 146 (198)
....++..+|++|+|+|+++....+..+. +..+.. .+.| +++++||+|+..... ...++..++++.++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888999999999999988543333333 333333 2456 789999999864211 11235566666665
Q ss_pred -CeEEEEccCCCCC----------HHHHHHHHHHHHH
Q 048059 147 -MFYIETSAKTAQN----------INELFYEIAKRLA 172 (198)
Q Consensus 147 -~~~~~~Sa~~~~~----------i~~~~~~l~~~~~ 172 (198)
++++++||++|.| +.++++.|...+.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 7888888776554
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=4.8e-22 Score=156.83 Aligned_cols=150 Identities=16% Similarity=0.122 Sum_probs=103.2
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--CC-----CCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKG--------QFYDQ--QE-----PTIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~--------~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
.....++|+++|++++|||||+++|++. .+... .. .+.|.+.......+......+.||||||++
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 3456799999999999999999999873 11100 00 012333333344444455678999999999
Q ss_pred hhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC
Q 048059 71 RYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQENG 146 (198)
Q Consensus 71 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 146 (198)
+|......++..+|++|+|+|+++... .+...|+..+... +.| +++++||+|+...... ..++...+...++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 998888889999999999999987643 3445555555442 456 8899999998642111 1234555666655
Q ss_pred -----CeEEEEccCCCCC
Q 048059 147 -----MFYIETSAKTAQN 159 (198)
Q Consensus 147 -----~~~~~~Sa~~~~~ 159 (198)
++++++||++|.|
T Consensus 163 ~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALE 180 (405)
T ss_dssp SCTTTSCEEECCHHHHHH
T ss_pred ccccCCCEEEccHHHhhh
Confidence 6899999999987
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=2.3e-21 Score=150.85 Aligned_cols=147 Identities=11% Similarity=0.087 Sum_probs=105.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEE
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYD 91 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 91 (198)
+|+++|++++|||||+++|+ ....|++.. ...+......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~----~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDIT----MYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSE----EEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEee----EEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 122222222 22233344568999999999988777788899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhCCCCceE-EEEEe-CCCCCCCCCCC--HHHHHHHHHHc---CCeEEE--EccCC---CCC
Q 048059 92 ISNMDTFNRANKLVQELQRQGNQIVVM-ALAAN-KSDLDSQREVP--TEEGEQFSQEN---GMFYIE--TSAKT---AQN 159 (198)
Q Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~Sa~~---~~~ 159 (198)
+. ..+.+...++..+... ..|. ++++| |+|+ ...... .+++.++.... .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 43 4455566666555443 2455 88888 9998 422111 13445555443 368999 99999 999
Q ss_pred HHHHHHHHHHHHHhh
Q 048059 160 INELFYEIAKRLARV 174 (198)
Q Consensus 160 i~~~~~~l~~~~~~~ 174 (198)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999877643
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3e-21 Score=158.74 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=100.7
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------------------------CCcceeEEEEEEEeCCcE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQE-----------------------------PTIGAAFFTQILSLSEAT 58 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 58 (198)
...+||+++|++++|||||+++|++........ ...|.+.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457999999999999999999998653211100 001222222222233345
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhh---H---HHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDT---F---NRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
..+.||||||++.|...+..++..+|++|+|+|++++.. + .+....+..+.. ....|++|++||+|+...+.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEecccccchhH
Confidence 678999999999999988999999999999999987421 0 122222222222 12346999999999865332
Q ss_pred CC----HHHHHHHHHHc-----CCeEEEEccCCCCCHHHH
Q 048059 133 VP----TEEGEQFSQEN-----GMFYIETSAKTAQNINEL 163 (198)
Q Consensus 133 ~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~ 163 (198)
.. .++...+.... +++++++||++|.|+.++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22 22333344433 468999999999999876
No 168
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=2.5e-21 Score=155.05 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=88.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC----------------------CC-----CCcceeEEEEEEEeCCcE
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ----------------------QE-----PTIGAAFFTQILSLSEAT 58 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~ 58 (198)
...++|+++|++++|||||+++|+. +.+... .. ...|.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4579999999999999999999974 211100 00 001111111111222234
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCC---
Q 048059 59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQR--- 131 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~--- 131 (198)
..+.||||||++.|.......+..+|++|+|+|+++.. +|+....|.+.+......+.| ++|++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 67899999999999988888999999999999998762 222111122222111113455 99999999985321
Q ss_pred ---CCCHHHHHHHHHHc-------CCeEEEEccCCCCCHHHHH
Q 048059 132 ---EVPTEEGEQFSQEN-------GMFYIETSAKTAQNINELF 164 (198)
Q Consensus 132 ---~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~ 164 (198)
....++...++... +++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123456666555 4679999999999998766
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.83 E-value=4.9e-22 Score=158.80 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=101.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCC-------------------------------CCCCCcceeEEEEEEE
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKG--QFYD-------------------------------QQEPTIGAAFFTQILS 53 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~-------------------------------~~~~~~~~~~~~~~~~ 53 (198)
....++|+++|++++|||||+++|++. .+.. ....|+... ...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~----~~~ 79 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA----LWK 79 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS----CEE
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEE----EEE
Confidence 345799999999999999999999864 1111 011222222 122
Q ss_pred eCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hHH---HHHHHHHHHHHhCCCCc-eEEEEEeCCC
Q 048059 54 LSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TFN---RANKLVQELQRQGNQIV-VMALAANKSD 126 (198)
Q Consensus 54 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~-p~iiv~nK~D 126 (198)
+......+.||||||++.|......++..+|++|+|+|+++.. +|+ +...++..+.. ... ++++++||+|
T Consensus 80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~D 156 (458)
T 1f60_A 80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMD 156 (458)
T ss_dssp EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccc
Confidence 3344567999999999999988888999999999999998753 221 23333333322 233 5899999999
Q ss_pred CCCCCC----CCHHHHHHHHHHcC-----CeEEEEccCCCCCHHHH
Q 048059 127 LDSQRE----VPTEEGEQFSQENG-----MFYIETSAKTAQNINEL 163 (198)
Q Consensus 127 l~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~ 163 (198)
+..... ...++...++..++ ++++++||++|.|+.++
T Consensus 157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 863211 12234555555555 68999999999998754
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=1.6e-20 Score=135.34 Aligned_cols=157 Identities=11% Similarity=0.088 Sum_probs=99.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----------hcccch
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----------YHSLAP 77 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~ 77 (198)
....+|+++|++|||||||+++|++..+.....++.|.+.....+.+.+ .+.+|||||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3467999999999999999999998664444455656554433333333 467999999732 222233
Q ss_pred hhh---cCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHHHHHHHHHHcC--Ce
Q 048059 78 MYY---RGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTEEGEQFSQENG--MF 148 (198)
Q Consensus 78 ~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~ 148 (198)
.++ ..++++++++|++++.+.. .+..|+. . ...|+++++||+|+.... +...+.+..++...+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 344 4689999999998765543 2233332 1 357899999999975421 111344555555554 57
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 149 YIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
++++||+++.|+++++++|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8899999999999999999887644
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=1.1e-21 Score=157.09 Aligned_cols=152 Identities=20% Similarity=0.195 Sum_probs=103.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEE
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVV 88 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 88 (198)
...+|+++|++++|||||+++|.+..+.....+.+..+.....+.. ....+.||||||++.|..++...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~--~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET--ENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT--TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEE--CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 4578999999999999999999875544332222222211111222 23467899999999999999999999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC--CCCHH--HHHHHHHHc--CCeEEEEccCCCCC
Q 048059 89 VYDISNM---DTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR--EVPTE--EGEQFSQEN--GMFYIETSAKTAQN 159 (198)
Q Consensus 89 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~--~~~~~~~~~--~~~~~~~Sa~~~~~ 159 (198)
|+|+++. ++.+.+ ..+.. .+.|+++++||+|+.... .+..+ +...++..+ .++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999873 333332 22222 457899999999986421 11100 000111222 36899999999999
Q ss_pred HHHHHHHHHH
Q 048059 160 INELFYEIAK 169 (198)
Q Consensus 160 i~~~~~~l~~ 169 (198)
++++|++|..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999874
No 172
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=4.8e-21 Score=145.32 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=101.9
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCc-----------------c---eeEE-------------
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ------QEPTI-----------------G---AAFF------------- 48 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~------~~~~~-----------------~---~~~~------------- 48 (198)
...++|+|+|.+|||||||+++|++..+... ..|+. | .+..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4468999999999999999999998776321 11210 0 0000
Q ss_pred ----------EEEEE-eCCcEEEEEEEeCCCch-------------hhcccchhhhcCCCeEE-EEEECCChhhHHHHHH
Q 048059 49 ----------TQILS-LSEATVKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAV-VVYDISNMDTFNRANK 103 (198)
Q Consensus 49 ----------~~~~~-~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 103 (198)
...+. .......+.||||||.. .+..++..++..++.+| +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00000 01113578999999963 34556677888888776 7999977544433333
Q ss_pred HHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHH--cC-CeEEEEccCCCCCHHHHHHHHHHHH
Q 048059 104 LVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQE--NG-MFYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 104 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
++..+ .....|+++|+||+|+........+........ .+ .+++++||++|.|+++++++|....
T Consensus 184 ~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 44433 234679999999999875544323322211001 12 3678899999999999999988743
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=1.9e-20 Score=160.38 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=108.4
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQ-------FYD-------QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERY 72 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 72 (198)
....++|+++|++++|||||+++|++.. +.. ....+.|.++....+.+......+.||||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4557999999999999999999998731 000 01122333333233344445567899999999999
Q ss_pred cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCCCCC---CHHHHHHHHHHcC--
Q 048059 73 HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQREV---PTEEGEQFSQENG-- 146 (198)
Q Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 146 (198)
......++..+|++|+|+|+++... .+...++..+... +.| ++|++||+|+...... ..+++..+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~ 448 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP 448 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence 8888888999999999999987543 2333444444432 356 7899999998642211 1245566666655
Q ss_pred ---CeEEEEccCCC--------CCHHHHHHHHHHHHH
Q 048059 147 ---MFYIETSAKTA--------QNINELFYEIAKRLA 172 (198)
Q Consensus 147 ---~~~~~~Sa~~~--------~~i~~~~~~l~~~~~ 172 (198)
++++++||++| .|+.++++.|...+.
T Consensus 449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 357778877766543
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.81 E-value=6.2e-19 Score=131.44 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=84.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhc-----
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYR----- 81 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----- 81 (198)
...++|+++|.+|+|||||+++|++..... ...+..........+.. ....+.||||||+..+....+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 457999999999999999999999876422 11122122222223333 3457899999999877666555543
Q ss_pred ----CCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCC--ceEEEEEeCCCCCCCCCCC
Q 048059 82 ----GAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQI--VVMALAANKSDLDSQREVP 134 (198)
Q Consensus 82 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~~~ 134 (198)
++|++++|++++... +... ..|+..+....... .|+++|+||+|+...+...
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999987654 4333 46777776653333 4899999999986444433
No 175
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.80 E-value=1.3e-20 Score=143.07 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=88.3
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhC-CCCCCCC--------CCcceeEEEEEEEeCCcEEEEEEEeCCCc-------h
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKG-QFYDQQE--------PTIGAAFFTQILSLSEATVKFDIWDTAGQ-------E 70 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~ 70 (198)
....++|+|+|++|+|||||+++|.+. .+..... ++.+...........+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345799999999999999999998875 3332221 11111111222222344567899999998 4
Q ss_pred hhcccch-------hhhcC-------------CCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCC
Q 048059 71 RYHSLAP-------MYYRG-------------AAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQ 130 (198)
Q Consensus 71 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (198)
.+..+.. .++.+ +++++|+.+.+. .+++.+. .+.+... ....++++|+||.|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCH
Confidence 4444443 44432 233444444322 2233332 1223333 245789999999998654
Q ss_pred CCC--CHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHhhCC
Q 048059 131 REV--PTEEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLARVSP 176 (198)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 176 (198)
+++ ..+++.+++..++++++++||+++ |++++|.++.+.+.+..+
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 332 235778888889999999999999 999999999999876654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=7.3e-19 Score=146.12 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=82.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------CcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP----------------TIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
....+|+|+|+.|+|||||+++|++......... ..+.++......+....+.+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 3468999999999999999999985322110000 012233333334444567899999999999
Q ss_pred hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
+...+..+++.+|++++|+|+++...... ..++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 98889999999999999999876544332 344444433 357899999999986
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=1.4e-18 Score=136.58 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=109.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh----hcccchhh---hcCCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER----YHSLAPMY---YRGAA 84 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~---~~~~d 84 (198)
.|+|+|++|||||||+++|++........+..........+...+ ...+.+||++|... +..+...+ +..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987643211111111111122233332 24578999999732 22232222 45799
Q ss_pred eEEEEEECCChhhHHHHHHHHHHHHHhCC--CCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHH
Q 048059 85 AAVVVYDISNMDTFNRANKLVQELQRQGN--QIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINE 162 (198)
Q Consensus 85 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 162 (198)
.+++++|++ ...+.++..|...+..... ...|.++++||.|+... ...+.........+++++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999997 5567777777666655431 24688899999998653 223444455555678999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 048059 163 LFYEIAKRLARVSP 176 (198)
Q Consensus 163 ~~~~l~~~~~~~~~ 176 (198)
++++|.+.+.+...
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887654
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.79 E-value=6.3e-19 Score=147.02 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=83.1
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHhC--CCC------CC--CC------CCcceeEEEEEEEeCCcEEEEEEEeCCCc
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIKG--QFY------DQ--QE------PTIGAAFFTQILSLSEATVKFDIWDTAGQ 69 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~~--~~~------~~--~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 69 (198)
......+|+|+|++|+|||||+++|+.. ... .. .. ...+.+.......+....+.+.||||||+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 4456799999999999999999999842 110 00 00 01111111112222333577899999999
Q ss_pred hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 70 ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 70 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
..+...+..+++.+|++|+|+|+++..+.+....|.. +.. .+.|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999899999999999999999998777766665553 332 3579999999999853
No 179
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.79 E-value=4.2e-19 Score=137.46 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=98.7
Q ss_pred CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCC----------hhhHHHHHHHHHHHH
Q 048059 40 EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISN----------MDTFNRANKLVQELQ 109 (198)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 109 (198)
.+|.|... ..+.+. .+.+.+|||+|++.++..|..++++++++|||||+++ ..+++....|+..+.
T Consensus 186 ~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~ 261 (362)
T 1zcb_A 186 RPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 261 (362)
T ss_dssp CCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH
T ss_pred CCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh
Confidence 35556543 333333 4789999999999999999999999999999999998 678988888888877
Q ss_pred Hh-CCCCceEEEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HcCCeEEEEccCCCCCHH
Q 048059 110 RQ-GNQIVVMALAANKSDLDSQR----------------EVPTEEGEQFSQ-----------ENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 110 ~~-~~~~~p~iiv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~ 161 (198)
.. ...+.|+++++||+|+..++ .++.+++..++. ..++.++++||+++.||+
T Consensus 262 ~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~ 341 (362)
T 1zcb_A 262 NNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR 341 (362)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred cchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence 64 34678999999999985221 256778877762 346789999999999999
Q ss_pred HHHHHHHHHHHhhCC
Q 048059 162 ELFYEIAKRLARVSP 176 (198)
Q Consensus 162 ~~~~~l~~~~~~~~~ 176 (198)
++|+++.+.+.+.+-
T Consensus 342 ~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 342 LVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876543
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=1.4e-19 Score=140.81 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=77.3
Q ss_pred EEEEEEeCCCchhh-------------cccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCC
Q 048059 59 VKFDIWDTAGQERY-------------HSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKS 125 (198)
Q Consensus 59 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 125 (198)
..+++|||||...+ ..+...++.++|++|++++.++..... ..|+..+........|+++|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence 35789999998765 556778889999999999875433221 234444444444567899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHH
Q 048059 126 DLDSQREVPTEEGEQFSQENGMFYIETSAKTAQNINELFYEIA 168 (198)
Q Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 168 (198)
|+........+....+...++.+|++++++.+.++++.+..+.
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 9876555555555555556778899999999888877665543
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=3.5e-20 Score=151.99 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=81.3
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC---------------------------CCCCcceeEEEEEEEeCCc
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQF--YDQ---------------------------QEPTIGAAFFTQILSLSEA 57 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 57 (198)
....++|+++|++++|||||+++|++... ... .....|.+.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 34578999999999999999999974210 000 0001123333333334444
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh---hH---HHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD---TF---NRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 130 (198)
...+.||||||++.|.......+..+|++|+|+|++++. .+ .+....+..+.. ...| +++++||+|+...
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccc
Confidence 577899999999999998888999999999999997532 11 111122222222 2334 8999999998642
Q ss_pred CCC----CHHHHHHHH-HHcCC-----eEEEEccCCCCCHH
Q 048059 131 REV----PTEEGEQFS-QENGM-----FYIETSAKTAQNIN 161 (198)
Q Consensus 131 ~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~ 161 (198)
... ..++...+. ...++ +++++||++|.|+.
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 211 122333444 33444 79999999999998
No 182
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=8e-20 Score=138.73 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=107.9
Q ss_pred HHHHHHHhCCCC-CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChh-hHHHHH
Q 048059 25 SLALRFIKGQFY-DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMD-TFNRAN 102 (198)
Q Consensus 25 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 102 (198)
+|+.++..+.+. ..+.||+|..+. ..+..++ .+.+||+ +++++.+++.+++++|++|+|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577778878887 778899996544 3222222 6889999 8999999999999999999999999987 788889
Q ss_pred HHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CeEEEEccCCCCCHHHHHHHHHH
Q 048059 103 KLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENG--MFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 103 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
.|+..+.. .+.|+++|+||+|+...+.+ ++..+++..++ ++++++||++|.|++++|.++..
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99887755 46799999999998654332 45677777777 89999999999999999988643
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=1.8e-18 Score=129.41 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=81.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcccchh-------h--
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSLAPM-------Y-- 79 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-------~-- 79 (198)
..++|+++|.+|+|||||+++|++..+... ....+.+.......+......+.+|||||...+...... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 479999999999999999999998764321 122222322333334444567999999998765433221 1
Q ss_pred hcCCCeEEEEEECCChhhHHHH-HHHHHHHHHhCCCC--ceEEEEEeCCCCCCCC
Q 048059 80 YRGAAAAVVVYDISNMDTFNRA-NKLVQELQRQGNQI--VVMALAANKSDLDSQR 131 (198)
Q Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~ 131 (198)
...+|++++|+|++.. ++... ..|+..+....... .|+++|+||+|+....
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2479999999998653 34333 46777776553333 6999999999986544
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=2.2e-18 Score=143.82 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=106.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEE-------EEEEEe--------------------------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYD-QQEPTIGAAFF-------TQILSL-------------------------- 54 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~-~~~~~~~~~~~-------~~~~~~-------------------------- 54 (198)
..++|+|+|.+|+|||||+|+|++..... ...++...... .....+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999876432 22232210000 000100
Q ss_pred --------------------CCcE--EEEEEEeCCCchh---hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHH
Q 048059 55 --------------------SEAT--VKFDIWDTAGQER---YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQ 109 (198)
Q Consensus 55 --------------------~~~~--~~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 109 (198)
.... ..+.||||||... ....+..++.++|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000 2588999999754 33456678899999999999998877777666654443
Q ss_pred HhCCCCceEEEEEeCCCCCCCCCCCHH----------HHHH-----HHHH--------cCCeEEEEccC-----------
Q 048059 110 RQGNQIVVMALAANKSDLDSQREVPTE----------EGEQ-----FSQE--------NGMFYIETSAK----------- 155 (198)
Q Consensus 110 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~Sa~----------- 155 (198)
. ...|+++|+||+|+.....++.+ .... +... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 35689999999998543211111 1111 1111 12469999999
Q ss_pred ---CCCCHHHHHHHHHHHHHh
Q 048059 156 ---TAQNINELFYEIAKRLAR 173 (198)
Q Consensus 156 ---~~~~i~~~~~~l~~~~~~ 173 (198)
++.|++++++.|.+.+.+
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999886654
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=6.1e-18 Score=137.02 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=79.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCcceeEEEEEEEeCCcEEEEEEEeCC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQ--------------------QEPTIGAAFFTQILSLSEATVKFDIWDTA 67 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 67 (198)
...++|+|+|++|+|||||+++|+....... ...+.|.+.......+....+.+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4569999999999999999999986311000 00111222222223333445789999999
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
|+..|...+..++..+|++|+|+|+++..... ...++..+ ...+.|+++++||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 99999888888999999999999998754322 22222222 224678999999999853
No 186
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=2.9e-18 Score=130.98 Aligned_cols=112 Identities=16% Similarity=0.101 Sum_probs=70.2
Q ss_pred EEEEEEeCCCchh-------------hcccchhhhcCCCeEEEEEECCChhhH-HHHHHHHHHHHHhCCCCceEEEEEeC
Q 048059 59 VKFDIWDTAGQER-------------YHSLAPMYYRGAAAAVVVYDISNMDTF-NRANKLVQELQRQGNQIVVMALAANK 124 (198)
Q Consensus 59 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK 124 (198)
..+.||||||... +...+..++..+|++++|+|.++.... .....+...+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4688999999743 445667788999999999997432211 1111222222 2346799999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCeEEEEccC---C---CCCHHHHHHHHHHHHHh
Q 048059 125 SDLDSQREVPTEEGEQFSQENGMFYIETSAK---T---AQNINELFYEIAKRLAR 173 (198)
Q Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~~~~~~ 173 (198)
+|+........+.........+..++++|+. + +.|+.++++.+...+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9986544422232221111122566766654 4 68999999998887754
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.6e-17 Score=138.74 Aligned_cols=124 Identities=18% Similarity=0.056 Sum_probs=84.2
Q ss_pred CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------CC---CCcceeEEEEEEEeC-------Cc
Q 048059 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKG--QFYDQ-----------QE---PTIGAAFFTQILSLS-------EA 57 (198)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~--~~~~~-----------~~---~~~~~~~~~~~~~~~-------~~ 57 (198)
|+.........+|+|+|+.|+|||||+++|+.. .+... .. ...+.+.......+. +.
T Consensus 1 ~~~~~~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~ 80 (704)
T 2rdo_7 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE 80 (704)
T ss_pred CCCCCCcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC
Confidence 444334455689999999999999999999752 11100 00 011222222222222 23
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
.+.+.||||||+.+|...+..+++.+|++|+|+|+++....+....|.. ... .+.|+++++||+|+.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRM 147 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCcc
Confidence 3889999999999998889999999999999999988765544444432 222 457899999999985
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=3.4e-18 Score=142.64 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=85.4
Q ss_pred CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHh--CCCCCC-----------CCC---CcceeEEEEEEEeCCcEEEEEEE
Q 048059 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIK--GQFYDQ-----------QEP---TIGAAFFTQILSLSEATVKFDIW 64 (198)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~--~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~~~~~l~ 64 (198)
|+...+.....+|+|+|++|+|||||+++|+. +..... +.+ ..+.+.......+....+.+.||
T Consensus 1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li 80 (693)
T 2xex_A 1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII 80 (693)
T ss_dssp -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence 56665556679999999999999999999985 221100 000 01111111112222234678999
Q ss_pred eCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 65 DTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 65 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
||||+..+...+..+++.+|++|+|+|+++..+......|.. +.. .+.|+++++||+|+..
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999999998888999999999999999998776666555543 333 3579999999999853
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=8.4e-19 Score=137.95 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=83.1
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ--------EPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS---- 74 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---- 74 (198)
....++|+|+|++|||||||++.|++..+.... .++.+.......+...+....+++||++|...+..
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 345789999999999999999999987653111 11222111111112223335789999999754311
Q ss_pred ---------------------cchhhhcCCCeEEEEEECCCh-hhHHHHH-HHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 75 ---------------------LAPMYYRGAAAAVVVYDISNM-DTFNRAN-KLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 75 ---------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
+...++.++++.+++|..... .+++... .|+..+. ...|+++|+||+|+...+
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHH
Confidence 122344556655555554332 3444443 4555553 367999999999986544
Q ss_pred CCCH--HHHHHHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 132 EVPT--EEGEQFSQENGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
++.. +.+..++...+++++++|++++.++.++|..+...+.
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 4433 5667777888999999999999999998887776543
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=2.4e-18 Score=134.89 Aligned_cols=85 Identities=20% Similarity=0.115 Sum_probs=47.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEE-------------------eCC-cEEEEEEEeCCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILS-------------------LSE-ATVKFDIWDTAG 68 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~l~D~~g 68 (198)
++|+|+|.+|||||||+++|++........+ |.........+. +.+ ...++.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998763222221 211121111111 122 246799999999
Q ss_pred chh----hcccch---hhhcCCCeEEEEEECCCh
Q 048059 69 QER----YHSLAP---MYYRGAAAAVVVYDISNM 95 (198)
Q Consensus 69 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 95 (198)
... ...+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222322 446899999999999774
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=1e-17 Score=121.58 Aligned_cols=155 Identities=18% Similarity=0.120 Sum_probs=94.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCcce--------eEEEEEEEe----------------CCcEE
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQ------EPTIGA--------AFFTQILSL----------------SEATV 59 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~~ 59 (198)
..+|+++|.+|||||||+++|+........ .+..+. ......+.. .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 478999999999999999999865221110 010000 000111111 11234
Q ss_pred EEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH
Q 048059 60 KFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE 139 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 139 (198)
.+.+|||+|+..... .+....+.+++|+|+++... ....+... ...|+++++||+|+........+...
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI------FRVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh------hhcCCEEEEecccCCcchhhHHHHHH
Confidence 678999988511111 11135788999999876432 11111111 13578999999998543333456666
Q ss_pred HHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHhhC
Q 048059 140 QFSQEN--GMFYIETSAKTAQNINELFYEIAKRLARVS 175 (198)
Q Consensus 140 ~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 175 (198)
.++... +++++++||++|.|+++++++|.+.+....
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 666554 478999999999999999999998875543
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.2e-15 Score=117.57 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhhc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERYH 73 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~ 73 (198)
++|+++|.+|||||||+++|++........| |.+.+.. .+.+.+. ...+++|||||...+.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998664322222 3332221 2223332 1468999999986542
Q ss_pred ----ccc---hhhhcCCCeEEEEEECCCh----------hhHHHHHHHHHH-----------------------------
Q 048059 74 ----SLA---PMYYRGAAAAVVVYDISNM----------DTFNRANKLVQE----------------------------- 107 (198)
Q Consensus 74 ----~~~---~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~----------------------------- 107 (198)
.+. ..+++++|++++|+|+++. ..++++..+...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~ 160 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF 160 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence 232 2347899999999999752 222222211111
Q ss_pred -----------HHH-------------------h-CCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccCC
Q 048059 108 -----------LQR-------------------Q-GNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAKT 156 (198)
Q Consensus 108 -----------~~~-------------------~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 156 (198)
+.. . .....|+++++|+.|.........+.+.+++...+++++++||+.
T Consensus 161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 110 0 012489999999999643223345677888888899999999763
No 193
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.67 E-value=5.5e-19 Score=128.75 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=90.2
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEE------------EEEEEeC-CcE-----------------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFF------------TQILSLS-EAT----------------- 58 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 58 (198)
..++|+|+|.+|||||||+++|+...+...+.++++.++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3589999999999999999999976544333333332221 1111111 111
Q ss_pred --EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059 59 --VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE 136 (198)
Q Consensus 59 --~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 136 (198)
..+.++|++|.-... ..+-...+..+.+.|......... ..... ...|.++|+||+|+...+....+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 134455555521000 011112344556666432111100 00011 12578999999998654334566
Q ss_pred HHHHHHHHc--CCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 137 EGEQFSQEN--GMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 137 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
+...++... +++++++||++|.|++++|++|.+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 677777654 6799999999999999999999987754
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=2.2e-17 Score=128.01 Aligned_cols=158 Identities=14% Similarity=0.144 Sum_probs=93.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCc---------------------------------------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQ------EPTI--------------------------------------- 43 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~------~~~~--------------------------------------- 43 (198)
...+|+|+|.+|||||||+++|++..+.... .|+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999987753211 1210
Q ss_pred ----ceeEEEEEEE-eCCcEEEEEEEeCCCch-------------hhcccchhhhcCCCeEEE-EEECCChhhHHHHHHH
Q 048059 44 ----GAAFFTQILS-LSEATVKFDIWDTAGQE-------------RYHSLAPMYYRGAAAAVV-VYDISNMDTFNRANKL 104 (198)
Q Consensus 44 ----~~~~~~~~~~-~~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~ 104 (198)
+.......+. .......+.||||||.. .+..+...|+.+++.+|+ |.+.+....-.. +
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---A 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---H
Confidence 0000000000 11123568999999963 344566677766665555 555543222111 2
Q ss_pred HHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH--HHHcCC-eEEEEccCCCCCHHHHHHHHHH
Q 048059 105 VQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF--SQENGM-FYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 105 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
...+........|+++|+||+|+........+..... ....++ +++.+||+++.|++++++++..
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2223333345679999999999865433222221110 001232 5678999999999999999876
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=3.3e-16 Score=121.44 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=69.7
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEE 137 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 137 (198)
.+.+.||||||... ........+|++++|+|....+..+.+... -...|+++|+||+|+...... ...
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~-~~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEA-RLA 238 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHH-HHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHH-HHH
Confidence 35788999999432 223445889999999998765443222210 123588999999998532111 111
Q ss_pred HHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 138 GEQFSQE----------NGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 138 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
...+... ++.+++++||++|.|+++++++|.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222221 25789999999999999999999988765
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=7.2e-16 Score=131.10 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=85.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCC------------CCC------CCCCCcceeEEEEEEE------------eCCc
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQ------------FYD------QQEPTIGAAFFTQILS------------LSEA 57 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~------------~~~------~~~~~~~~~~~~~~~~------------~~~~ 57 (198)
....||+|+|++++|||||+++|+... +.. ....|+........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 446899999999999999999998631 100 0111222222222232 2345
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
.+.+.||||||+.+|...+..+++.+|++|+|+|+++..+++....|..... .+.|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 7889999999999999999999999999999999999877777665654332 357899999999975
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=2.4e-15 Score=122.39 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=80.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCC------------------CCC--CCCCCcceeEEEEEEEeCCcEEEEEEEeCCC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQ------------------FYD--QQEPTIGAAFFTQILSLSEATVKFDIWDTAG 68 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 68 (198)
+..||+|+|+.++|||||..+|+... +.. .....-|.+.....+.+.++.+.+.|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 46899999999999999999986310 000 0001112222233344455668899999999
Q ss_pred chhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 69 QERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
+.+|.......++-+|++|+|+|+...-..+...-|. .... .++|+++++||.|..
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~---~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRM---RATPVMTFVNKMDRE 165 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHH---hCCceEEEEecccch
Confidence 9999999999999999999999998765444444443 3333 457999999999974
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=119.86 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=62.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEE 137 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 137 (198)
.+.+.++||+|... ........+|++++|+|.+.+...+.+.. .+ -..|.++++||+|+...... ...
T Consensus 166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI 233 (349)
T ss_dssp TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence 35678999999531 12345678999999999876543322211 11 23477889999998531110 011
Q ss_pred HHHHHH----------HcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 138 GEQFSQ----------ENGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 138 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
...+.. .+..+++.+||++|.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 122221 124578999999999999999999887643
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=7e-15 Score=109.27 Aligned_cols=110 Identities=18% Similarity=0.086 Sum_probs=67.7
Q ss_pred EEEEEEeCCCchhhcccch------hhhcCCCeEEEEEECCChh---hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 59 VKFDIWDTAGQERYHSLAP------MYYRGAAAAVVVYDISNMD---TFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
+.+.||||||......... ..+.. +++++++|..... .+.....+...... ....|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEecccccc
Confidence 5788999999876543322 13456 8888888875332 22222111111111 13468999999999854
Q ss_pred CCCCCHHHHHHH----------------------------HHHcC--CeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 130 QREVPTEEGEQF----------------------------SQENG--MFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 130 ~~~~~~~~~~~~----------------------------~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
..+. ++..++ +..++ ++++++||+++.|+++++++|.+.+..
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 3211 111111 23333 489999999999999999999887654
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.59 E-value=1.4e-15 Score=123.77 Aligned_cols=117 Identities=16% Similarity=0.249 Sum_probs=79.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCcceeEEEEEEEeCC----------------------------
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFY---DQQEPTIGAAFFTQILSLSE---------------------------- 56 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------- 56 (198)
....+|+|+|.+|+|||||+|+|++..+. ....++.. ..........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEEEEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 34689999999999999999999998753 22222221 1010000000
Q ss_pred -cE----------EEEEEEeCCCchh-----------hcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCC
Q 048059 57 -AT----------VKFDIWDTAGQER-----------YHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQ 114 (198)
Q Consensus 57 -~~----------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 114 (198)
.. ..+.||||||... +...+..++..+|++|+|+|+++....+....|+..+.. .
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~ 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence 00 2578999999864 345566778899999999999875444555566555432 4
Q ss_pred CceEEEEEeCCCCCC
Q 048059 115 IVVMALAANKSDLDS 129 (198)
Q Consensus 115 ~~p~iiv~nK~Dl~~ 129 (198)
..|+++|+||+|+..
T Consensus 218 ~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 218 EDKIRVVLNKADMVE 232 (550)
T ss_dssp GGGEEEEEECGGGSC
T ss_pred CCCEEEEEECCCccC
Confidence 578999999999864
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=4.9e-15 Score=114.85 Aligned_cols=152 Identities=20% Similarity=0.159 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEeCC-------------------cEEEEEEEeCCCc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSLSE-------------------ATVKFDIWDTAGQ 69 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~ 69 (198)
++|+++|.+|||||||+++|++........+ |...+.... .+.+ ....+.+|||||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999997642211111 222222121 2221 2356899999998
Q ss_pred hhhc----ccc---hhhhcCCCeEEEEEECCCh----------hhHHHHHHHHH--------------------------
Q 048059 70 ERYH----SLA---PMYYRGAAAAVVVYDISNM----------DTFNRANKLVQ-------------------------- 106 (198)
Q Consensus 70 ~~~~----~~~---~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~-------------------------- 106 (198)
.... .+. ...++++|++++|+|+++. ..++++..+..
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 6542 122 2347899999999999751 11221111000
Q ss_pred ---------H----HHH-------------------hC-CCCceEEEEEeCCCCC--CC-CCCCHHHHHHHHHHcCCeEE
Q 048059 107 ---------E----LQR-------------------QG-NQIVVMALAANKSDLD--SQ-REVPTEEGEQFSQENGMFYI 150 (198)
Q Consensus 107 ---------~----~~~-------------------~~-~~~~p~iiv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~ 150 (198)
. +.. .. -...|+++++||.|.. .. +....+.++++++..+++++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv 239 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVV 239 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEE
Confidence 0 000 00 1136999999999842 21 13445777888888899999
Q ss_pred EEccCCCCCHHHHH
Q 048059 151 ETSAKTAQNINELF 164 (198)
Q Consensus 151 ~~Sa~~~~~i~~~~ 164 (198)
++||+.+.++.++.
T Consensus 240 ~iSAk~E~el~eL~ 253 (368)
T 2dby_A 240 VVSARLEAELAELS 253 (368)
T ss_dssp EECHHHHHHHHTSC
T ss_pred EeechhHHHHHHhc
Confidence 99998855554443
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=1.1e-14 Score=112.21 Aligned_cols=104 Identities=18% Similarity=0.087 Sum_probs=64.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCH--
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPT-- 135 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-- 135 (198)
.+.+.||||||...... .....+|++++|+|.+....++.+.. .. ...|.++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 45789999999654332 24688999999999875543221111 00 1357889999999854211110
Q ss_pred HHHHHHHHHc-------CCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 136 EEGEQFSQEN-------GMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 136 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
++........ ..+++++||++|.|+++++++|...+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1111111111 357899999999999999999998765
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.50 E-value=7.9e-13 Score=110.89 Aligned_cols=124 Identities=19% Similarity=0.113 Sum_probs=81.0
Q ss_pred CCCCCCceeeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--C------CCCcceeEEEEEEEe--C-----Cc
Q 048059 1 MARPGNKIIQAKLVLLGDMGTGKTSLALRFIKG--------QFYDQ--Q------EPTIGAAFFTQILSL--S-----EA 57 (198)
Q Consensus 1 m~~~~~~~~~~~i~v~G~~~sGKssli~~l~~~--------~~~~~--~------~~~~~~~~~~~~~~~--~-----~~ 57 (198)
|+...+-..-.||+|+|+.++|||||..+|+.. ..... + ...-|.+.....+.+ . ..
T Consensus 4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~ 83 (709)
T 4fn5_A 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD 83 (709)
T ss_dssp --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence 666655566689999999999999999998731 11100 0 001122222222222 1 23
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
.+.+.|+||||+.+|.......++-+|++|+|+|+...-..+...-|..... .++|.++++||.|..
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 6889999999999999999999999999999999986654444444444333 346889999999974
No 204
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.50 E-value=5.1e-14 Score=106.80 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=78.2
Q ss_pred chhhcccchhhhcCCCeEEEEEECCChh-hHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC-HHHHHHHHHHcC
Q 048059 69 QERYHSLAPMYYRGAAAAVVVYDISNMD-TFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP-TEEGEQFSQENG 146 (198)
Q Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 146 (198)
++++..+.+.+++++|++++|||++++. +++.+..|+..+.. .+.|+++|+||+|+.....+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5677888888999999999999999886 88888899886654 457999999999986433212 344566666778
Q ss_pred CeEEEEccCCCCCHHHHHHHH
Q 048059 147 MFYIETSAKTAQNINELFYEI 167 (198)
Q Consensus 147 ~~~~~~Sa~~~~~i~~~~~~l 167 (198)
++++++||++|.|++++++.+
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHhhc
Confidence 999999999999999999874
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=7.1e-13 Score=102.77 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=92.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc-------cchhhhcC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS-------LAPMYYRG 82 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~ 82 (198)
..+|+++|.||||||||+|+|++........|....+.....+.+.+ .+++++||||...-.. ..-..+++
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 46899999999999999999998665444444433333344445554 5678999999632111 12234578
Q ss_pred CCeEEEEEECCChhhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCC--------CCCCCCHHHHHHHHHHcCCeEEEE
Q 048059 83 AAAAVVVYDISNMDTFNRANKLVQELQRQG--NQIVVMALAANKSDLD--------SQREVPTEEGEQFSQENGMFYIET 152 (198)
Q Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~--------~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
+|++++|+|.+++.. ..+.....+.... -...|.+++.||.|.. .....+.++.+.+...+.+..-++
T Consensus 150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 999999999998743 2222222333211 1345777888999963 223455666676666655433333
Q ss_pred ccCCCCCHHHHHH
Q 048059 153 SAKTAQNINELFY 165 (198)
Q Consensus 153 Sa~~~~~i~~~~~ 165 (198)
-...+...+++.+
T Consensus 228 ~~~~nv~eddl~d 240 (376)
T 4a9a_A 228 AFRCDATVDDLID 240 (376)
T ss_dssp EECSCCCHHHHHH
T ss_pred eecccCCHHHHHH
Confidence 3333444444443
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.48 E-value=6.6e-14 Score=116.83 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=94.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcce------------------------------------------
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGA------------------------------------------ 45 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~------------------------------------------ 45 (198)
...+|+|+|.+++|||||+|+|++..+ +.....+...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 346999999999999999999998765 2211111100
Q ss_pred ------eEEEEEEE-eCCcEEEEEEEeCCCchh-------------hcccchhhh-cCCCeEEEEEECCChhhHHHHHHH
Q 048059 46 ------AFFTQILS-LSEATVKFDIWDTAGQER-------------YHSLAPMYY-RGAAAAVVVYDISNMDTFNRANKL 104 (198)
Q Consensus 46 ------~~~~~~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~ 104 (198)
......+. .......+.|+||||... ...+...++ ..+|++++|+|++......+...+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00000000 011123478999999543 122333344 578999999999764333232223
Q ss_pred HHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH--HHcC-CeEEEEccCCCCCHHHHHHHHHHH
Q 048059 105 VQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS--QENG-MFYIETSAKTAQNINELFYEIAKR 170 (198)
Q Consensus 105 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 170 (198)
+..+ .....|+++|+||+|+............... ...+ .+++.+||++|.|++++++.+...
T Consensus 210 l~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 210 AKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 3333 2346799999999998754443222111000 0112 256789999999999999998873
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.47 E-value=1.9e-14 Score=119.17 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCC------C--C---CC---CcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK--GQFYD------Q--Q---EP---TIGAAFFTQILSLSEATVKFDIWDTAGQERYHS 74 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~--~~~~~------~--~---~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 74 (198)
.||+|+|+.++|||||..+|+. +.... . . .+ .-|.+.....+.+..+.+.+.|+||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 5899999999999999999873 11110 0 0 00 003333344445566677899999999999999
Q ss_pred cchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC
Q 048059 75 LAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD 128 (198)
Q Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (198)
.....++-+|++|+|+|+...-..+...-|.. ... .++|.++++||.|..
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~---~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK---MGIPTIFFINKIDQN 132 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH---HTCSCEECCEECCSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCeEEEEeccccc
Confidence 99999999999999999986544333333433 333 235788899999974
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.47 E-value=2.7e-13 Score=104.30 Aligned_cols=104 Identities=12% Similarity=0.067 Sum_probs=62.5
Q ss_pred EEEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHH
Q 048059 58 TVKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEE 137 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~ 137 (198)
...+.|+||+|..... ......+|.+++++|....+..+.+... +. ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 4578899999964321 2345789999999998654322211111 11 13456677999964322111111
Q ss_pred HHHHHHH----------cCCeEEEEccCCCCCHHHHHHHHHHHHH
Q 048059 138 GEQFSQE----------NGMFYIETSAKTAQNINELFYEIAKRLA 172 (198)
Q Consensus 138 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 172 (198)
.+.+... +..+++.+||+++.|++++++.|.+.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2233221 1357899999999999999999988654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.42 E-value=8.7e-14 Score=98.40 Aligned_cols=107 Identities=7% Similarity=-0.088 Sum_probs=68.4
Q ss_pred CCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHH---HHHHHHhC-CCCceEEEEEeCC-CCCCCCCCCHHHHHH
Q 048059 66 TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKL---VQELQRQG-NQIVVMALAANKS-DLDSQREVPTEEGEQ 140 (198)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~-~~~~p~iiv~nK~-Dl~~~~~~~~~~~~~ 140 (198)
.+|++.++.+|.+|+.++|++|||+|.+|.+-++.-..+ ...+.... ..+.|++|++||. |+.. ..+..++.+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 348889999999999999999999999987544322222 22222221 2578999999995 6643 233333332
Q ss_pred HHH----HcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 141 FSQ----ENGMFYIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
... ...+.+..|||.+|+|+.+.++||...+..+
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 221 2456799999999999999999998766443
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.35 E-value=2.3e-11 Score=94.90 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=55.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhh-
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQF-YDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERY- 72 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~- 72 (198)
..+|+++|++|||||||+++|++... .....|....+.....+.+.+. ...+.+||+||....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 57999999999999999999999664 3333332222222223333331 135789999995322
Q ss_pred ------cccchhhhcCCCeEEEEEECCC
Q 048059 73 ------HSLAPMYYRGAAAAVVVYDISN 94 (198)
Q Consensus 73 ------~~~~~~~~~~~d~~i~v~d~~~ 94 (198)
...+...++.+|++++|+|..+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2233445688999999999863
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.35 E-value=7.2e-13 Score=103.20 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=49.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCc---------------EEEEEEEeCCCchhhcc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEA---------------TVKFDIWDTAGQERYHS 74 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~ 74 (198)
.++|+++|.+|||||||+++|++........|..+.+.....+.+.+. ...+++||+||......
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 578999999999999999999987653333332222222223333321 23589999999875443
Q ss_pred -------cchhhhcCCCeEEEEEECCChh
Q 048059 75 -------LAPMYYRGAAAAVVVYDISNMD 96 (198)
Q Consensus 75 -------~~~~~~~~~d~~i~v~d~~~~~ 96 (198)
.+..+++++|++++|+|+++.+
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC----
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 4456788999999999987543
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=96.36 Aligned_cols=107 Identities=7% Similarity=-0.061 Sum_probs=73.5
Q ss_pred CCCchhhcccchhhhcCCCeEEEEEECCChhhHH---HHHHHHHHHHHh-CCCCceEEEEEeC-CCCCCCCCCCHHHHHH
Q 048059 66 TAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFN---RANKLVQELQRQ-GNQIVVMALAANK-SDLDSQREVPTEEGEQ 140 (198)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~-~~~~~p~iiv~nK-~Dl~~~~~~~~~~~~~ 140 (198)
.+|++..+.+|.+|+.++|++|||+|.+|.+.++ ++..+...+... ...+.|++|++|| .|+.. ..+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 4678899999999999999999999999887543 222222333222 1356899999996 58743 233333332
Q ss_pred HHH----HcCCeEEEEccCCCCCHHHHHHHHHHHHHhh
Q 048059 141 FSQ----ENGMFYIETSAKTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 141 ~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 174 (198)
... ...+.+..|||.+|+|+.+.++||...+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 211 1356799999999999999999999877543
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=8e-10 Score=85.90 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=73.5
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF----SQ 143 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~ 143 (198)
..+.|...++.+.+.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+.... ...+...++ ++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 45788889999999999999999999864 44555555543 367999999999986433 333444443 55
Q ss_pred HcCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 048059 144 ENGM---FYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
..++ .++.+||++|.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999987643
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.03 E-value=8.8e-10 Score=88.62 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=83.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH------hCCCC---C-CCCCC-----------cceeEEEEEEE-------------e
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFI------KGQFY---D-QQEPT-----------IGAAFFTQILS-------------L 54 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~~~-------------~ 54 (198)
....|+|+|.+||||||+++.|. +.+.. . .+.+. .+..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 32210 0 00000 01111110000 0
Q ss_pred CCcEEEEEEEeCCCchhhcc-cchh---h--hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceE-EEEEeCCCC
Q 048059 55 SEATVKFDIWDTAGQERYHS-LAPM---Y--YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVM-ALAANKSDL 127 (198)
Q Consensus 55 ~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl 127 (198)
....+.+.|+||||...... ++.. . ...+|.+++|+|+...... ......+... .|+ ++|+||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~----~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK----VDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH----HCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh----cCceEEEEeCCcc
Confidence 01345788999999753211 1111 1 2278999999999765431 1122223221 464 788999997
Q ss_pred CCCCCCCHHHHHHHHHHcCCeE------------------EEEccCCCCC-HHHHHHHHHHH
Q 048059 128 DSQREVPTEEGEQFSQENGMFY------------------IETSAKTAQN-INELFYEIAKR 170 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~l~~~ 170 (198)
...... +.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 532221 222333444443 3368888988 98888888765
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.98 E-value=4e-11 Score=93.25 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC----CCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhccc--------ch
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ----FYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHSL--------AP 77 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~ 77 (198)
..+|+++|.+|+|||||+|+|++.. .........+++.......+... +.++||||....... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 3579999999999999999999751 01111122234444444444443 679999996422211 11
Q ss_pred hhh--cCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEccC
Q 048059 78 MYY--RGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSAK 155 (198)
Q Consensus 78 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (198)
.++ ...+.++++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+...++.
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~ 313 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKR 313 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGG
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCch
Confidence 111 56899999998732210001100 11112356799999999997543332 344456666777766655655
Q ss_pred CCCCH
Q 048059 156 TAQNI 160 (198)
Q Consensus 156 ~~~~i 160 (198)
...++
T Consensus 314 ~~~~~ 318 (369)
T 3ec1_A 314 YAAEF 318 (369)
T ss_dssp GTTTC
T ss_pred hhhhc
Confidence 44433
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=3.5e-09 Score=83.23 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEEEe--CCcEEEEEEEeCCCchhh--------------
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEP--TIGAAFFTQILSL--SEATVKFDIWDTAGQERY-------------- 72 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~-------------- 72 (198)
++++|+|++|+|||||++.|++..+...... ..+.......+.. ......++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 6799999999999999999998643321111 1122221222212 222346789999875321
Q ss_pred cccchhhh-------------cCC--Ce-EEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCC--
Q 048059 73 HSLAPMYY-------------RGA--AA-AVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVP-- 134 (198)
Q Consensus 73 ~~~~~~~~-------------~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-- 134 (198)
...+..++ ..+ |+ ++|+.|...+-+..++ .. +... ....|+++|.||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-ei---lk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VT---MKKL-DSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HH---HHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HH---HHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence 01111111 112 23 5556665433222221 22 2222 2568999999999975422210
Q ss_pred HHHHHHHHHHcCCeEEEEccC
Q 048059 135 TEEGEQFSQENGMFYIETSAK 155 (198)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~Sa~ 155 (198)
...+.......|++++.+|..
T Consensus 198 ~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHcCCcEEecCCC
Confidence 111111122346777777753
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.95 E-value=2.7e-11 Score=94.19 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=76.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-----CCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchhhcc----cchhh-
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFY-----DQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQERYHS----LAPMY- 79 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~~~~- 79 (198)
..+|+++|.+|+|||||+|+|++.... .......+++.....+.+... +.++||||...... +....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 357999999999999999999975311 112233344444444554443 67999999643221 11111
Q ss_pred -----hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059 80 -----YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 80 -----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
....+.++++++....-.+..+.. +......+.|+++++||.|....... ......+.+..+..+.+.++
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence 256788888887632110011100 11112346799999999997543322 34445555666665444443
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.90 E-value=5.5e-08 Score=76.44 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=84.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeE--EEEEEEeCCcEEEEEEEeCCCchhhcccchhh-----hc
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTI-GAAF--FTQILSLSEATVKFDIWDTAGQERYHSLAPMY-----YR 81 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~~ 81 (198)
...++|+|++|||||||++.|.+......-.-.. +... ....... ...-.+.++|++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3579999999999999999999843322211111 1110 0111111 111146799999864221111222 23
Q ss_pred CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCC-------CCCCCCHHHH----HHHHH----HcC
Q 048059 82 GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLD-------SQREVPTEEG----EQFSQ----ENG 146 (198)
Q Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-------~~~~~~~~~~----~~~~~----~~~ 146 (198)
..+.+++ ++....+ -.. ..+...+.. .+.|+++|.||.|+. ..+....+.. .++.. +.+
T Consensus 148 ~~~~~~~-lS~G~~~-kqr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK-KND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC-HHH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc-HHH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555 7765211 111 112222222 346999999999962 2222223333 33321 222
Q ss_pred ---CeEEEEcc--CCCCCHHHHHHHHHHHHHhh
Q 048059 147 ---MFYIETSA--KTAQNINELFYEIAKRLARV 174 (198)
Q Consensus 147 ---~~~~~~Sa--~~~~~i~~~~~~l~~~~~~~ 174 (198)
..++.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 35788999 56677999999998776544
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.86 E-value=4.1e-09 Score=81.99 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=71.4
Q ss_pred CchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHH----HH
Q 048059 68 GQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQF----SQ 143 (198)
Q Consensus 68 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~ 143 (198)
.++.|....+.+++.++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+.... ...+...++ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888899999999999999999998763 3433444433 367999999999986432 223444443 45
Q ss_pred HcCC---eEEEEccCCCCCHHHHHHHHHHHH
Q 048059 144 ENGM---FYIETSAKTAQNINELFYEIAKRL 171 (198)
Q Consensus 144 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 171 (198)
..+. .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5666 689999999999999999987654
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.82 E-value=2.8e-08 Score=74.01 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++++|+|++|+|||||++.|++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999998743
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.80 E-value=6.1e-09 Score=78.05 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=69.1
Q ss_pred EEeCCCch-hhcccchhhhcCCCeEEEEEECCChhhHH--HHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHH
Q 048059 63 IWDTAGQE-RYHSLAPMYYRGAAAAVVVYDISNMDTFN--RANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGE 139 (198)
Q Consensus 63 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 139 (198)
+-..||+. .........+.++|++++|+|+.++.+.. .+..|+ .+.|.++|+||+|+.... ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34578875 44456667789999999999999987764 344332 467999999999986421 112223
Q ss_pred HHHHHcCCeEEEEccCCCCCHHHHHHHHHHHHHh
Q 048059 140 QFSQENGMFYIETSAKTAQNINELFYEIAKRLAR 173 (198)
Q Consensus 140 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 173 (198)
++.+..+.+++.+||+++.|++++++.+.+.+.+
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3334457899999999999999999988776653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.63 E-value=3.1e-08 Score=74.19 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=35.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE 70 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 70 (198)
..++|+++|.||+|||||+|+|++.... ......+.+.....+..+. .+.++||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 4689999999999999999999976532 2223333333222333332 46799999974
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.58 E-value=2.2e-08 Score=74.24 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCchh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQER 71 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 71 (198)
++++++|.+|+|||||+|+|.+.... ...++.|.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 59999999999999999999976543 2233344433222233222 467999999753
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.54 E-value=4.7e-07 Score=71.56 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=51.0
Q ss_pred EEEEEEeCCCchhhccc----ch--hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCC
Q 048059 59 VKFDIWDTAGQERYHSL----AP--MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQRE 132 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 132 (198)
+.+.|+||+|....... .. .....+|.+++|+|++....... ....+.... .+..||+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~---~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT---PIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC---CCeEEEEECCCCccc--
Confidence 67889999995322110 00 11235799999999876543222 223333322 245688899997431
Q ss_pred CCHHHHHHHHHHcCCeEEEEcc
Q 048059 133 VPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
.-.+.......+.|+.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23345555567888887775
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.36 E-value=5.8e-07 Score=73.57 Aligned_cols=64 Identities=13% Similarity=-0.007 Sum_probs=39.3
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEE--Ee-CCcEEEEEEEeCCCchh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEP-TIGAAFFTQIL--SL-SEATVKFDIWDTAGQER 71 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~ 71 (198)
...+.|+|+|.||+|||||+|+|++......... +.+.+...+.+ .. ......+.|+||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3468899999999999999999998653211111 11222112221 11 12334678999999753
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.29 E-value=2.1e-07 Score=68.92 Aligned_cols=91 Identities=15% Similarity=0.026 Sum_probs=60.0
Q ss_pred CCCchh-hcccchhhhcCCCeEEEEEECCChhhHHH--HHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH
Q 048059 66 TAGQER-YHSLAPMYYRGAAAAVVVYDISNMDTFNR--ANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS 142 (198)
Q Consensus 66 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 142 (198)
.||+.. ........+.++|+++.|+|+.++.+... +. ++ +.|.++|+||+|+..... .+...++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 456542 23345567789999999999998876542 22 21 579999999999864211 12223344
Q ss_pred HHcCCeEEEEccCCCCCHHHHHHHHHH
Q 048059 143 QENGMFYIETSAKTAQNINELFYEIAK 169 (198)
Q Consensus 143 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 169 (198)
+..+.++ .+||+++.|++++++.+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 4567888 9999999999998877543
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.28 E-value=1.5e-07 Score=74.29 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=51.8
Q ss_pred EEEEEEEeCCCchh--hcc----cchh--hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCC
Q 048059 58 TVKFDIWDTAGQER--YHS----LAPM--YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDS 129 (198)
Q Consensus 58 ~~~~~l~D~~g~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (198)
.+.+.|+||+|... ... .... .....+.+++|+|+...+... .....+.... .+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc
Confidence 45678999999633 111 0111 112568999999987654322 2233343322 25678899999642
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059 130 QREVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
..-.+.......+.|+.+++.
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC
T ss_pred ----cchHHHHHHHHHCCCEEEEEC
Confidence 123455556667899888876
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.28 E-value=3.1e-06 Score=67.05 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCchhhcc-cch-----hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCc-e-EEEEEeCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIV-V-MALAANKSDLDS 129 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~Dl~~ 129 (198)
.+.+.|+||||...... +.. ..+..+|.+++|+|+..... .......+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 45678999999643211 111 11236899999999865432 122222222 223 4 788999999742
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEE
Q 048059 130 QREVPTEEGEQFSQENGMFYIET 152 (198)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
. ...+..+....+.++..+
T Consensus 253 ~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----THHHHHHHHHSSCCEEEE
T ss_pred c----hHHHHHHHHHHCCCEEEe
Confidence 1 122344566677776655
No 229
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.23 E-value=9.5e-08 Score=76.63 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=59.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEEeCCcEEEEEEEeCCCch--hhcccc--------h
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKGQFYDQQEPTIGAAFFTQILSLSEATVKFDIWDTAGQE--RYHSLA--------P 77 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--~~~~~~--------~ 77 (198)
.....|+++|.+||||||+.++|...... ...++.............+......+||..|.+ +....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999998753211 111211110000000001111234578988873 223333 4
Q ss_pred hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHh
Q 048059 78 MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQ 111 (198)
Q Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~ 111 (198)
.++...++.++|+|.++. +.+....|+..+...
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 566667888999999887 566667777766654
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.21 E-value=3.3e-06 Score=63.65 Aligned_cols=91 Identities=18% Similarity=0.099 Sum_probs=54.4
Q ss_pred EEEEEEEeCCCchh--hcc-cch-----hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCC
Q 048059 58 TVKFDIWDTAGQER--YHS-LAP-----MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLD 128 (198)
Q Consensus 58 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~ 128 (198)
.+.+.++||||... ... +.. .....+|.+++|+|...... .......+.. ..+ ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 45688999999755 211 111 12346899999999864322 1222223322 134 67888999964
Q ss_pred CCCCCCHHHHHHHHHHcCCeEEEEccCCCCCHH
Q 048059 129 SQREVPTEEGEQFSQENGMFYIETSAKTAQNIN 161 (198)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 161 (198)
. ....+.......+.|+..++ .|++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~ 279 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKID 279 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence 2 13345566777888888776 455544
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.12 E-value=5e-07 Score=68.27 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=58.9
Q ss_pred hcccchhhhcCCCeEEEEEECCChhh-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC--CHHHHHHHHHHcCCe
Q 048059 72 YHSLAPMYYRGAAAAVVVYDISNMDT-FNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV--PTEEGEQFSQENGMF 148 (198)
Q Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~ 148 (198)
...+......++|.+++|+|+.+|.. ...+..++.... ..+.|.+||+||+|+...... ..+...++....+.+
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 34455557899999999999987654 334444433222 245688999999998653210 012233343456889
Q ss_pred EEEEccCCCCCHHHHHH
Q 048059 149 YIETSAKTAQNINELFY 165 (198)
Q Consensus 149 ~~~~Sa~~~~~i~~~~~ 165 (198)
++.+||.++.|+++++.
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 99999998887766544
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.10 E-value=7.2e-06 Score=67.75 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.|+|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999999864
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=1.5e-05 Score=60.91 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=50.3
Q ss_pred EEEEEeCCCchhhcccchh------hhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCC
Q 048059 60 KFDIWDTAGQERYHSLAPM------YYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREV 133 (198)
Q Consensus 60 ~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 133 (198)
.+.++|++|.......... ..-..|-.+++.|..... ++......+....+ .-++++||.|... +
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~a-~-- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDADA-R-- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGCS-C--
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCcc-c--
Confidence 4567999986432221111 112478889999976543 23333333433221 3467779999532 1
Q ss_pred CHHHHHHHHHHcCCeEEEEccCCCCCH
Q 048059 134 PTEEGEQFSQENGMFYIETSAKTAQNI 160 (198)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i 160 (198)
.-.+.......+.|+..++ +|+++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGY 307 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence 2334566677888888877 55544
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.85 E-value=3.3e-05 Score=61.26 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.4
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.+-.-|.|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34567999999999999999999863
No 235
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.78 E-value=4.6e-05 Score=58.71 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=53.0
Q ss_pred hhcCCCeEEEEEECCChhh-HHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHHHHHHHH---HHcCCeEEEEcc
Q 048059 79 YYRGAAAAVVVYDISNMDT-FNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTEEGEQFS---QENGMFYIETSA 154 (198)
Q Consensus 79 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa 154 (198)
...++|.+++|.+. +|.. ...+..++..... .+.|++||+||+|+..... .+....+. ...|.+++.+||
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEec
Confidence 36889999988765 4543 3444444433222 2357789999999864321 11123333 346889999999
Q ss_pred CCCCCHHHHHHH
Q 048059 155 KTAQNINELFYE 166 (198)
Q Consensus 155 ~~~~~i~~~~~~ 166 (198)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999887654
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.65 E-value=0.00086 Score=53.11 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=45.5
Q ss_pred EEEEEEEeCCCchhhcc-cch-----hhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCce-EEEEEeCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHS-LAP-----MYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVV-MALAANKSDLDSQ 130 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 130 (198)
.+.+.|+||||...... ... .....++.+++|+|+...... ......+... .+ ..+|.||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCcc
Confidence 45788999999643221 111 123468999999998654322 2222233222 23 3468899997432
Q ss_pred CCCCHHHHHHHHHHcCCeEEEE
Q 048059 131 REVPTEEGEQFSQENGMFYIET 152 (198)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
. ..+.......+.|+..+
T Consensus 256 ~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C----THHHHHHHHHCCCEEEE
T ss_pred H----HHHHHHHHHHCCCeEEE
Confidence 2 12334555556654433
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.65 E-value=3.1e-05 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=4e-05 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
--++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999863
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.52 E-value=5.4e-05 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998876
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.47 E-value=6.6e-05 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999874
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=0.0003 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
--++++|++|||||||++.|. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999998 43
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.45 E-value=7.3e-05 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
--++|+|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999998874
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.44 E-value=3.7e-05 Score=58.09 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-.++|+|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998643
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.44 E-value=7.5e-05 Score=52.15 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998863
No 245
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.41 E-value=0.00014 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.|+|+|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.40 E-value=9.1e-05 Score=52.63 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|++|||||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999988743
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.40 E-value=9.2e-05 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.--++|+|++|||||||++.|.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4568899999999999999998743
No 248
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.38 E-value=0.00017 Score=51.33 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCc-hhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCCCCCHH
Q 048059 58 TVKFDIWDTAGQ-ERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQREVPTE 136 (198)
Q Consensus 58 ~~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 136 (198)
.+.+.++|+|+. .. ......+..+|.+|++... +..++..+...++.+.... ..++.+|.|+.|.... ....
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence 456889999876 32 2334566789999999875 4566777777777776632 3468899999995320 1134
Q ss_pred HHHHHHHHcCCeEE
Q 048059 137 EGEQFSQENGMFYI 150 (198)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (198)
+..+..+.++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 45555555665543
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.37 E-value=0.0001 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998873
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.35 E-value=8.8e-05 Score=51.10 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 048059 12 KLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~ 31 (198)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.35 E-value=0.00012 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..--|+|+|++|||||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3456899999999999999999864
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.34 E-value=0.00012 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999998753
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.33 E-value=0.00012 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988763
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.33 E-value=0.00013 Score=51.06 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999854
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.30 E-value=0.00014 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999988763
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.30 E-value=0.00016 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
....|+|+|++|||||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.29 E-value=0.00015 Score=51.21 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-.|+|+|++|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998875
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.29 E-value=0.00015 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..-|+|+|++|||||||++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998753
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.27 E-value=0.00017 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999988754
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.27 E-value=0.00016 Score=50.47 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.26 E-value=0.00014 Score=52.79 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|++|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988764
No 262
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.26 E-value=0.00016 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
..|+|+|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999988744
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.26 E-value=0.00017 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999886
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.25 E-value=0.00018 Score=49.24 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 048059 11 AKLVLLGDMGTGKTSLALRF 30 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l 30 (198)
.-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999988
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.24 E-value=0.0002 Score=48.96 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 266
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.23 E-value=0.00017 Score=52.03 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.21 E-value=0.00021 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 268
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.21 E-value=0.00029 Score=50.49 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 048059 13 LVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~ 32 (198)
|+|+|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988874
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.20 E-value=0.0002 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++++|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 270
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.20 E-value=0.00022 Score=50.69 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
+.|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988875
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.20 E-value=0.00022 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998864
No 272
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.18 E-value=0.00024 Score=51.81 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 048059 11 AKLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~ 31 (198)
-.|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999988
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.00026 Score=49.86 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.17 E-value=0.00025 Score=48.88 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998875
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00031 Score=48.75 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.16 E-value=0.00022 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999988864
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.16 E-value=0.00023 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
=.++|+|++|||||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998876
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.16 E-value=0.00024 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|+|++||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 279
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.15 E-value=0.00022 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999888743
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.15 E-value=0.00026 Score=49.20 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.15 E-value=0.00022 Score=52.65 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|+.|||||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999988874
No 282
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.15 E-value=0.00027 Score=49.19 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...+|+|+|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999888753
No 283
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.15 E-value=0.00022 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988864
No 284
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.15 E-value=0.00023 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|++|||||||++.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999754
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.14 E-value=0.00028 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999998876
No 286
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.13 E-value=0.00034 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988864
No 287
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.13 E-value=0.00023 Score=49.23 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988763
No 288
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.13 E-value=0.00024 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888743
No 289
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.11 E-value=0.00024 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|++|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999888743
No 290
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.11 E-value=0.0003 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999988763
No 291
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.11 E-value=0.00026 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988864
No 292
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.11 E-value=0.00027 Score=51.14 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988874
No 293
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.10 E-value=0.00029 Score=49.64 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..-|+|+|++||||||+++.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888753
No 294
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.10 E-value=0.001 Score=44.25 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4699999999999999977654
No 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.10 E-value=0.00027 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999988864
No 296
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.10 E-value=0.00026 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|++|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988774
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00037 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988764
No 298
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.09 E-value=0.00027 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999988874
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.09 E-value=0.00028 Score=51.94 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988874
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00039 Score=48.38 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.08 E-value=0.00032 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
=.++|+|++|+|||||++.|.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999998876
No 302
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.08 E-value=0.00031 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 303
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.08 E-value=0.00038 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
+.|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.08 E-value=0.00036 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|+|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988764
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.08 E-value=0.00036 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.0
Q ss_pred ceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 7 KIIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 7 ~~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
......|+|.|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999998864
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.08 E-value=0.00029 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999888743
No 307
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.07 E-value=0.00036 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998875
No 308
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.07 E-value=0.00035 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 309
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.07 E-value=0.00038 Score=48.27 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 310
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.06 E-value=0.00022 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.378 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 311
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.06 E-value=0.00033 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.06 E-value=0.0003 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999988864
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.05 E-value=0.00041 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.05 E-value=0.00033 Score=53.05 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
....-|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44578999999999999999988763
No 315
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.05 E-value=0.00038 Score=48.13 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-++|+|++|||||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.04 E-value=0.0004 Score=48.35 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 317
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.04 E-value=0.00033 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999888743
No 318
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.04 E-value=0.00032 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988874
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.03 E-value=0.00037 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.02 E-value=0.00034 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999888743
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00045 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...+|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 322
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.01 E-value=0.00036 Score=47.99 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999988864
No 323
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.01 E-value=0.00022 Score=51.45 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=15.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH-hC
Q 048059 11 AKLVLLGDMGTGKTSLALRFI-KG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~-~~ 33 (198)
--++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999988 53
No 324
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.01 E-value=0.00042 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988864
No 325
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.00 E-value=0.00036 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999988864
No 326
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.00 E-value=0.0004 Score=50.42 Aligned_cols=20 Identities=50% Similarity=0.851 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 048059 12 KLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~ 31 (198)
-++|+|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 327
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.99 E-value=0.00056 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.99 E-value=0.00078 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 329
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.97 E-value=0.00048 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-.++++|++|||||||++.|.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998754
No 330
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00044 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|++.|++||||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.94 E-value=0.00057 Score=46.52 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988865
No 332
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.94 E-value=0.0007 Score=47.03 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.6
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
+....|++.|.+||||||+++.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4457899999999999999998865
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.94 E-value=0.00059 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...|+|+|++||||||+++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999988763
No 334
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.002 Score=45.41 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 048059 13 LVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~ 32 (198)
+++.|++|+|||++++.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998875
No 335
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.94 E-value=0.00051 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988864
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.00047 Score=53.20 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998876
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.00026 Score=48.81 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.+.|+|++|||||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988763
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.93 E-value=0.00047 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...-|+|.|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999874
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.93 E-value=0.00051 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 340
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.00049 Score=51.11 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.93 E-value=0.00058 Score=49.76 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..-|+|+|+.|||||||++.|.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998876
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.93 E-value=0.00054 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|.|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 343
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.91 E-value=0.00054 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988864
No 344
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.91 E-value=0.00047 Score=53.35 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-+++|+|++|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988874
No 345
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.89 E-value=0.00054 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999888743
No 346
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00062 Score=48.90 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 347
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.89 E-value=0.00061 Score=49.24 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..+|+|.|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988864
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.87 E-value=0.00074 Score=47.38 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...|+|.|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999999988764
No 349
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.86 E-value=0.00055 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|+.|||||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988864
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.86 E-value=0.00038 Score=46.82 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-.++++|++|+|||+|++.+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999888643
No 351
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.86 E-value=0.00069 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...|+|.|++||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999988763
No 352
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.86 E-value=0.00064 Score=49.67 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999998863
No 353
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.84 E-value=0.00063 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999988743
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.84 E-value=0.00089 Score=50.16 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=21.2
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
....-|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999987764
No 355
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.84 E-value=0.00039 Score=52.46 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.++|+|++|||||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 589999999999999988876
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.84 E-value=0.00068 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998874
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.83 E-value=0.00043 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=16.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 358
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.82 E-value=0.00069 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36899999999999999888743
No 359
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.82 E-value=0.00067 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3689999999999999988874
No 360
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.00084 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988753
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.81 E-value=0.00076 Score=47.58 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..-|+|+|++|||||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 362
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.0007 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999988743
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.81 E-value=0.00084 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.81 E-value=0.00074 Score=48.34 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.80 E-value=0.00067 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
-.++|+|++|||||||++.|.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999864
No 366
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.80 E-value=0.00072 Score=52.54 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999888743
No 367
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.80 E-value=0.00075 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.++|+|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998876
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.79 E-value=0.00089 Score=46.81 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988865
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.79 E-value=0.00074 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.--|+|+|++||||||+++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999998874
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.79 E-value=0.00087 Score=46.04 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-+.|+|.+|||||||+.+|..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.78 E-value=0.00088 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.78 E-value=0.00064 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|+|++|||||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988864
No 373
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.77 E-value=0.00078 Score=52.25 Aligned_cols=22 Identities=41% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3689999999999999988874
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.77 E-value=0.00087 Score=45.78 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.77 E-value=0.00099 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...-|+|+|++|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 376
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.77 E-value=0.00076 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 36899999999999999988743
No 377
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.77 E-value=0.00053 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.77 E-value=0.00081 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.--++++|++||||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 379
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.0011 Score=46.48 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.4
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.....+.|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHH
Confidence 445678999999999999999988865
No 380
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.77 E-value=0.00076 Score=53.16 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|++||||||+++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998874
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.76 E-value=0.001 Score=50.50 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.1
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...+-|+|+|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457799999999999999988764
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.75 E-value=0.00084 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.75 E-value=0.0009 Score=46.32 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988764
No 384
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.75 E-value=0.0011 Score=45.27 Aligned_cols=22 Identities=50% Similarity=0.655 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988764
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.74 E-value=0.00091 Score=46.69 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998875
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.74 E-value=0.00034 Score=49.63 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.74 E-value=0.0011 Score=45.68 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|++.|.+||||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988875
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.73 E-value=0.001 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 048059 10 QAKLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~ 31 (198)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.71 E-value=0.00095 Score=49.52 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999998863
No 390
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.71 E-value=0.00087 Score=54.20 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-.++|+|++||||||+++.+++-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998743
No 391
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.71 E-value=0.00091 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988863
No 392
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.68 E-value=0.00063 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999888743
No 393
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.67 E-value=0.0011 Score=47.52 Aligned_cols=21 Identities=48% Similarity=0.748 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-++|+|++|+|||||+..+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 394
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.67 E-value=0.0013 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..-|+|+|++|||||+|...|..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 34588999999999999999875
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.67 E-value=0.0011 Score=45.70 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999998864
No 396
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.65 E-value=0.0013 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=21.0
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..+.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988765
No 397
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.65 E-value=0.0011 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999988863
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.63 E-value=0.0013 Score=47.62 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.6
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..+.|+|.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.61 E-value=0.0015 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998875
No 400
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.60 E-value=0.0014 Score=47.94 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..+++.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999988763
No 401
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.60 E-value=0.0013 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHH
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~ 31 (198)
...+||+|+|.+|||||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446899999999999999998764
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.60 E-value=0.0015 Score=48.69 Aligned_cols=23 Identities=39% Similarity=0.343 Sum_probs=20.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHH
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~ 31 (198)
..+.|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999998886
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.0012 Score=49.34 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 404
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.59 E-value=0.001 Score=45.71 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888753
No 405
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.58 E-value=0.0046 Score=49.03 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=19.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHH
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~ 31 (198)
.+-.=|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345667799999999999999654
No 406
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.57 E-value=0.0015 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 407
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.57 E-value=0.0016 Score=45.77 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999888753
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0013 Score=50.67 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.--|+++|++||||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 35689999999999999998875
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.55 E-value=0.00063 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999888743
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.54 E-value=0.0015 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|++.|.+||||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999988764
No 411
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.54 E-value=0.0013 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.|+|+|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988864
No 412
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.52 E-value=0.0016 Score=46.26 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-++|+|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 413
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.52 E-value=0.0017 Score=46.79 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=20.3
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.....+++.|+|+|||||||+...|..
T Consensus 4 ~~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 4 HHHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -----CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccccceeeECCCCCCHHHHHHHHHH
Confidence 345578999999999999999988764
No 414
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.51 E-value=0.0014 Score=47.28 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.0
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
....-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999888763
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0016 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999873
No 416
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0015 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
-.++|+|+.|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999988763
No 417
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.49 E-value=0.0075 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..|++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999998653
No 418
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.49 E-value=0.0016 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.--|+|+|++|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 34689999999999999998875
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.48 E-value=0.0016 Score=48.75 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.47 E-value=0.0022 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...-|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999988753
No 421
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.47 E-value=0.0019 Score=43.33 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 048059 13 LVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~ 31 (198)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999875
No 422
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.47 E-value=0.0018 Score=49.71 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
=++.|+|++|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998854
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.40 E-value=0.0019 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998885
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.39 E-value=0.0014 Score=49.75 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|.|+.|||||||++.|.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999753
No 425
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.38 E-value=0.0023 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...|++.|++|+|||++++.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999988753
No 426
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.33 E-value=0.0019 Score=45.76 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888875
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.32 E-value=0.0025 Score=47.28 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999998753
No 428
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0039 Score=44.77 Aligned_cols=24 Identities=8% Similarity=-0.096 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
++=|++.|+++.|||+|++++.+.
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred ceEEEecCcccccHHHHHHHHhcc
Confidence 344455599999999999999975
No 429
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.31 E-value=0.0034 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998875
No 430
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.31 E-value=0.0024 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..-+++.|+||+|||+|++.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456888899999999999988753
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.31 E-value=0.0025 Score=47.58 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-.+++.|++|+|||++++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 432
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.30 E-value=0.0028 Score=46.29 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...+++.|++|+|||++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998875
No 433
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.29 E-value=0.0029 Score=47.46 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.3
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986654
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.28 E-value=0.0026 Score=45.47 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.28 E-value=0.0024 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999998875
No 436
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.27 E-value=0.0033 Score=48.01 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.26 E-value=0.0028 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998753
No 438
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.25 E-value=0.0025 Score=47.83 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.|++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999998863
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.25 E-value=0.0026 Score=47.15 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 440
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.23 E-value=0.0037 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988743
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.20 E-value=0.0031 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
....|+|+|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988774
No 442
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.20 E-value=0.0027 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988763
No 443
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.18 E-value=0.0036 Score=44.00 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.17 E-value=0.0035 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++++|+.|||||||++.|.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988743
No 445
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.16 E-value=0.003 Score=47.84 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.+++.|++|+|||+|++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998875
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.16 E-value=0.0031 Score=48.83 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 048059 13 LVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~ 31 (198)
.+|+|+.|||||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999876
No 447
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.15 E-value=0.0031 Score=44.44 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~~ 34 (198)
...|+|+|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999987643
No 448
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.15 E-value=0.0041 Score=46.61 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999988753
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0039 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
-++|+|+.|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999988743
No 450
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.14 E-value=0.0045 Score=45.64 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
....+++.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999988763
No 451
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.10 E-value=0.0042 Score=48.94 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999875
No 452
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.10 E-value=0.0043 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++++|++|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 453
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.10 E-value=0.0035 Score=47.05 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCchhhcc--cc--hhhhc--CCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCCCCCCC
Q 048059 58 TVKFDIWDTAGQERYHS--LA--PMYYR--GAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSDLDSQR 131 (198)
Q Consensus 58 ~~~~~l~D~~g~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (198)
...+.|+||+|...... +. ...+. ..+.+++|+|.+.. .+.+..+...+.. - ...-+|.||.|....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l-~~~giVltk~D~~~~- 254 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---V-PVNQYIFTKIDETTS- 254 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---S-CCCEEEEECTTTCSC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---C-CCCEEEEeCCCcccc-
Confidence 34688999999754321 11 11222 36778899987643 2334433333221 1 123466699996432
Q ss_pred CCCHHHHHHHHHHcCCeEEEEc
Q 048059 132 EVPTEEGEQFSQENGMFYIETS 153 (198)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~S 153 (198)
...+...+...++++..++
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2355666777788766554
No 454
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.09 E-value=0.0039 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
++|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998854
No 455
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.06 E-value=0.0038 Score=45.01 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 456
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.03 E-value=0.0042 Score=47.40 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988853
No 457
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.02 E-value=0.0041 Score=46.50 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0039 Score=49.18 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.|++.||||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999863
No 459
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.01 E-value=0.0039 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998876
No 460
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.01 E-value=0.0046 Score=51.10 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999888743
No 461
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0045 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 462
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.0045 Score=46.98 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.|++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998863
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.97 E-value=0.0052 Score=50.77 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|+.|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 464
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.97 E-value=0.0034 Score=48.02 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 048059 13 LVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~ 32 (198)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 465
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.0049 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|+.|||||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988743
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.97 E-value=0.0045 Score=46.69 Aligned_cols=86 Identities=15% Similarity=0.046 Sum_probs=47.4
Q ss_pred EEEEEEeCCCchhhcccc-------hhh-----hcCCCeEEEEEECCChhhHHHHHHHHHHHHHhCCCCceEEEEEeCCC
Q 048059 59 VKFDIWDTAGQERYHSLA-------PMY-----YRGAAAAVVVYDISNMDTFNRANKLVQELQRQGNQIVVMALAANKSD 126 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 126 (198)
..+.++||||........ ... -...+.+++|.|..... +.+.. ...+.... . ...+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 457899999863211100 111 12478899999986332 22221 12233221 1 3446679999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCeEEEEcc
Q 048059 127 LDSQREVPTEEGEQFSQENGMFYIETSA 154 (198)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (198)
....- -.+.......+.|+.+++.
T Consensus 261 ~~~~g----G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTAKG----GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred Cccch----HHHHHHHHHHCCCEEEEeC
Confidence 63222 2366777778888877754
No 467
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.96 E-value=0.0055 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999987654
No 468
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.95 E-value=0.0057 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-|+|+|++|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999998753
No 469
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.95 E-value=0.0048 Score=46.79 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
...|++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998753
No 470
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.95 E-value=0.005 Score=46.47 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-.+++.|++|+|||+|+.++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988775
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.94 E-value=0.0061 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~~ 34 (198)
.++|+|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 472
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0046 Score=48.90 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999863
No 473
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.92 E-value=0.0045 Score=47.22 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 474
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.91 E-value=0.0042 Score=44.13 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.+.|+|.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988764
No 475
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.91 E-value=0.0047 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
--+.|+|++|+|||||+..+...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999998864
No 476
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.90 E-value=0.0052 Score=47.43 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988764
No 477
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.90 E-value=0.0028 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++++|++|||||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988763
No 478
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.88 E-value=0.0031 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.++++|++|||||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999888763
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.86 E-value=0.0064 Score=43.67 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=21.5
Q ss_pred CceeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 6 NKIIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 6 ~~~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
......-|++.|.+||||||+++.|..
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444567899999999999999988764
No 480
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0048 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 048059 13 LVLLGDMGTGKTSLALRFIKGQ 34 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~~ 34 (198)
++|+|+.|||||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999998754
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.84 E-value=0.0057 Score=43.18 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 048059 13 LVLLGDMGTGKTSLALRFI 31 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~ 31 (198)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4688999999999999864
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.0052 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-.|++.||||+|||.|++++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 356999999999999999999863
No 483
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.84 E-value=0.0027 Score=52.19 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.++++|++|||||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 678999999999999987765
No 484
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.80 E-value=0.0035 Score=46.06 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
....|+|.|..||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999987764
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.79 E-value=0.0061 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
No 486
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.76 E-value=0.0036 Score=51.54 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.++++|++|||||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999987775
No 487
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.74 E-value=0.006 Score=46.50 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 048059 13 LVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 13 i~v~G~~~sGKssli~~l~~~ 33 (198)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.74 E-value=0.0025 Score=46.86 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999998875
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.71 E-value=0.008 Score=42.82 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.8
Q ss_pred eeeeEEEEEcCCCCCHHHHHHHHHh
Q 048059 8 IIQAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 8 ~~~~~i~v~G~~~sGKssli~~l~~ 32 (198)
+...-|++-|++||||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4456799999999999999988764
No 490
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.70 E-value=0.0041 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 9 IQAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 9 ~~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
....|+|+|++|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467999999999999999988764
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.70 E-value=0.0087 Score=41.14 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
..-|++.|++|+||||+.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 356899999999999999988863
No 492
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.68 E-value=0.0057 Score=48.92 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~~ 33 (198)
.-+++++|+||+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999987753
No 493
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.68 E-value=0.0054 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-.++|.|++|+|||++++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998875
No 494
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.68 E-value=0.0065 Score=46.76 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 048059 11 AKLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~~ 33 (198)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999988763
No 495
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.68 E-value=0.017 Score=40.33 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=54.7
Q ss_pred EEEEEEeCCCchhhcccchhhhcCCCeEEEEEECCChhhHHHHHHHHHHHHHhC--CCCceEEEEEeCCCCCCCCCCCHH
Q 048059 59 VKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDISNMDTFNRANKLVQELQRQG--NQIVVMALAANKSDLDSQREVPTE 136 (198)
Q Consensus 59 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~ 136 (198)
+.+.++|+|+.. .......+..+|.+|++...+.. + ..+..+++.+.... .+..++.+|.|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 578899999864 33445566779999999987543 4 66666666665532 345677899999995321 223
Q ss_pred HHHHHHHHcCCeEE
Q 048059 137 EGEQFSQENGMFYI 150 (198)
Q Consensus 137 ~~~~~~~~~~~~~~ 150 (198)
+..++.+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555555443
No 496
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.67 E-value=0.0063 Score=49.02 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 048059 12 KLVLLGDMGTGKTSLALRFIKG 33 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~~ 33 (198)
.|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998863
No 497
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.66 E-value=0.0084 Score=43.36 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
.-|++.|..||||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998875
No 498
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.64 E-value=0.0064 Score=49.57 Aligned_cols=22 Identities=50% Similarity=0.563 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 048059 11 AKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 11 ~~i~v~G~~~sGKssli~~l~~ 32 (198)
-.++++|++|+|||||++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 499
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.62 E-value=0.0079 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 048059 10 QAKLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 10 ~~~i~v~G~~~sGKssli~~l~~ 32 (198)
...|++.|++|+|||+|++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 500
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.62 E-value=0.0071 Score=48.43 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 048059 12 KLVLLGDMGTGKTSLALRFIK 32 (198)
Q Consensus 12 ~i~v~G~~~sGKssli~~l~~ 32 (198)
.|+++|++|+|||+|++.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999886
Done!