BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048062
(686 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 218 LKSLEIRSCPKL----QSLVAEEEKDQQQQLCEL-SCRLEYLALSGCEGLVKLPQXXXXX 272
L+ L IR+CP+L + L + + + Q L L S RLE+ G+ LP
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW------TGIRSLPASIANL 205
Query: 273 XXXREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDC 332
+ ++I P + KL+++ +R C AL++ P + + L+ L + DC
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLILKDC 263
Query: 333 HS-LTYIAGVQLPPSLKRLEIYLCYNLRTL 361
+ LT + L++L++ C NL L
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Query: 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPP---SLKSLRVGGCSKLESIAERLDN 436
L EL I C LT ELP L S + +L+SLR+ + + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIAN 204
Query: 437 NTSLETIAVSFCRN--LKILPSGLHNLRQLQEIGIWECD-LVSFPQ--GGLPCAKLMRLE 491
+L+++ + RN L L +H+L +L+E+ + C L ++P GG A L RL
Sbjct: 205 LQNLKSLKI---RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLI 259
Query: 492 ISYCKRLQVLPKGLHNLTSLQQLRIGKGV---ELPSLEEDGLPTN 533
+ C L LP +H LT L++L + V LPSL LP N
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 27/181 (14%)
Query: 285 SLVSFPEVALPS------KLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLT-- 336
+L P ALP+ +L+++ IR C L LP+ + ++S E + + SL
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLE 191
Query: 337 YIAGVQLPPSLKRLEIYLCYNLRTLTVEEG-IQCSSSRRYASSLLEELEISGCLSLTCIF 395
+ LP S+ L+ NL++L + + + LEEL++ GC +L
Sbjct: 192 WTGIRSLPASIANLQ-----NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL---- 242
Query: 396 SKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILP 455
+N P + G P LK L + CS L ++ + T LE + + C NL LP
Sbjct: 243 -RNYPP-----IFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 456 S 456
S
Sbjct: 295 S 295
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 212 LQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQXXXX 271
+ ++ +LKSL+IR+ P L +L +LE L L GC L P
Sbjct: 202 IANLQNLKSLKIRNSP-LSALGPA---------IHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 272 XXXXREIEIYKCSSLVSFP-EVALPSKLKKIQIRECDALKSLP 313
+ + + CS+L++ P ++ ++L+K+ +R C L LP
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 131/327 (40%), Gaps = 81/327 (24%)
Query: 280 IYKCSSLVSFPEVALPSKLKKIQIRECD--ALKSLPQ--AWMCDNNSSLE---------I 326
+ C+SL PE LP LK + + + AL LP ++ +N+ LE
Sbjct: 97 VASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154
Query: 327 LKIWDCHSLTYIAGVQLPPSLKRL--------EIYLCYNLRTLTVEEGIQCS-------- 370
LKI D + + LPPSL+ + E+ NL LT S
Sbjct: 155 LKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP 214
Query: 371 ---SSRRYASSLLEEL-EISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSK 426
S +++LEEL E+ LT I++ N L TL +LPPSL++L V +
Sbjct: 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-----PDLPPSLEALNVRD-NY 268
Query: 427 LESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLR--------------QLQEIGIWEC 472
L + E L + + ++ + L LP L+ L L+E+ +
Sbjct: 269 LTDLPE-LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327
Query: 473 DLVSFPQGGLPCAKLMRLEISYCKRLQV--LPKGLHNL--------------TSLQQLRI 516
L+ P LP +L RL S+ +V LP+ L L S++ LR+
Sbjct: 328 KLIELP--ALP-PRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 384
Query: 517 GKGV-ELPSLEEDGLPTNLHSLEINSN 542
+ E+P LP NL L + +N
Sbjct: 385 NSHLAEVPE-----LPQNLKQLHVETN 406
>pdb|1PKX|A Chain A, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|B Chain B, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|C Chain C, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|D Chain D, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1P4R|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1P4R|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1PL0|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|C Chain C, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|D Chain D, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
Length = 592
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 22/100 (22%)
Query: 36 DDLMEWENMLEMIKAVLDDAEEKKTTNRFVKKWLGKLQNLAYDVEDLLDQFQTEAFRRKL 95
+DL++W+ + E + +L +AE+ K+W+ KL ++ + FR +
Sbjct: 503 EDLIKWKALFEEVPELLTEAEK--------KEWVEKLTEVSISSDAFF------PFRDNV 548
Query: 96 VLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELSV 135
R A PS S A +K+VIE C+EL +
Sbjct: 549 DRAKRSGVAYIAAPSGS--------AADKVVIEACDELGI 580
>pdb|1M9N|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1M9N|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1OZ0|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor
Beta-dadf.
pdb|1OZ0|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor Beta-dadf
Length = 613
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 22/102 (21%)
Query: 36 DDLMEWENMLEMIKAVLDDAEEKKTTNRFVKKWLGKLQNLAYDVEDLLDQFQTEAFRRKL 95
+DL++W+ M E + A L +AE+ K+W+ KL ++ + FR +
Sbjct: 524 EDLVKWQAMFEEVPAQLTEAEK--------KQWIAKLTAVSLSSDAFF------PFRDNV 569
Query: 96 VLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELSVSI 137
R PS S A +++VIE C EL +++
Sbjct: 570 DRAKRIGVQFIVAPSGS--------AADEVVIEACNELGITL 603
>pdb|1THZ|A Chain A, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|1THZ|B Chain B, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|2B1G|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|C Chain C, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|D Chain D, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
Length = 593
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 22/102 (21%)
Query: 36 DDLMEWENMLEMIKAVLDDAEEKKTTNRFVKKWLGKLQNLAYDVEDLLDQFQTEAFRRKL 95
+DL++W+ M E + A L +AE+ K+W+ KL ++ + FR +
Sbjct: 504 EDLVKWQAMFEEVPAQLTEAEK--------KQWIAKLTAVSLSSDAFF------PFRDNV 549
Query: 96 VLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELSVSI 137
R PS S A +++VIE C EL +++
Sbjct: 550 DRAKRIGVQFIVAPSGS--------AADEVVIEACNELGITL 583
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLD 435
+ +LL ++ + T + N A L L+V P L +L + ++L+S+
Sbjct: 39 SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQ 97
Query: 436 NNTSLETIAVSFCRNLKILPSG-LHNLRQLQEIGIWECDLVSFPQGGL-PCAKLMRLEIS 493
+L + VSF R L LP G L L +LQE+ + +L + P G L P KL +L ++
Sbjct: 98 TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 494 YCKRLQVLPKGLHN 507
L LP GL N
Sbjct: 157 -NNNLTELPAGLLN 169
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLD 435
+ +LL ++ + T + N A L L+V P L +L + ++L+S+
Sbjct: 39 SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQ 97
Query: 436 NNTSLETIAVSFCRNLKILPSG-LHNLRQLQEIGIWECDLVSFPQGGL-PCAKLMRLEIS 493
+L + VSF R L LP G L L +LQE+ + +L + P G L P KL +L ++
Sbjct: 98 TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 494 YCKRLQVLPKGLHN 507
L LP GL N
Sbjct: 157 -NNNLTELPAGLLN 169
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLD 435
+ +LL ++ + T + N A L L+V P L +L + ++L+S+
Sbjct: 39 SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQ 97
Query: 436 NNTSLETIAVSFCRNLKILPSG-LHNLRQLQEIGIWECDLVSFPQGGL-PCAKLMRLEIS 493
+L + VSF R L LP G L L +LQE+ + +L + P G L P KL +L ++
Sbjct: 98 TLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 494 YCKRLQVLPKGLHN 507
L LP GL N
Sbjct: 157 N-NNLTELPAGLLN 169
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 341 VQLPPSLK---RLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSK 397
+ +P S+K R CY L+++ + ++ + +E+ I +++
Sbjct: 99 INIPDSVKXIGRCTFSGCYALKSILLPLXLKSIGVEAFKGCDFKEITIPEGVTVI----G 154
Query: 398 NELPATLESLEVGNLPPSLKSLRVG---GCSKLESI 430
+E AT ESLE +LP S ++L G GC KL+SI
Sbjct: 155 DEAFATCESLEYVSLPDSXETLHNGLFSGCGKLKSI 190
>pdb|1G8M|A Chain A, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
pdb|1G8M|B Chain B, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
Length = 593
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 22/102 (21%)
Query: 36 DDLMEWENMLEMIKAVLDDAEEKKTTNRFVKKWLGKLQNLAYDVEDLLDQFQTEAFRRKL 95
+DL++W+ E + A L +AE+ K+W+ KL ++ + FR +
Sbjct: 504 EDLVKWQAXFEEVPAQLTEAEK--------KQWIAKLTAVSLSSDAFF------PFRDNV 549
Query: 96 VLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELSVSI 137
R PS S A +++VIE C EL +++
Sbjct: 550 DRAKRIGVQFIVAPSGS--------AADEVVIEACNELGITL 583
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 14/149 (9%)
Query: 355 CYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPP 414
C NL+ L + E S + S + L+++C+ S+ A LE L P
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA-LERLVTRC--P 211
Query: 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVS---------FCRNLKILPSGLHNLRQLQ 465
+LKSL++ LE +A L LE + L + SG LR L
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271
Query: 466 EIGIWECDLVSFPQGGLPCAKLMRLEISY 494
G W+ P C++L L +SY
Sbjct: 272 --GFWDAVPAYLPAVYSVCSRLTTLNLSY 298
>pdb|3H6D|A Chain A, Structure Of The Mycobacterium Tuberculosis Dutpase D28n
Mutant
Length = 174
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 500 VLPKGLHNLTSLQQLRIGKGVELPSLEEDG-LPTNLHSLE 538
++P+G H T+L +R+ G+ LPS DG NL+S E
Sbjct: 14 LVPRGSHMSTTLAIVRLDPGLPLPSRAHDGDAGVNLYSAE 53
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSG-LHNLR 462
L L+V P L +L + ++L+S+ +L + VSF R L LP G L L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124
Query: 463 QLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLHN 507
+LQE+ + +L + P G L P KL +L ++ +L LP GL N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLN 169
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSG-LHNLR 462
L L+V P L +L + ++L+S+ +L + VSF R L LP G L L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124
Query: 463 QLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLHN 507
+LQE+ + +L + P G L P KL +L ++ +L LP GL N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPAGLLN 169
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSG-LHNLR 462
L L+V P L +L + ++L+S+ +L + VSF R L LP G L L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124
Query: 463 QLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLHN 507
+LQE+ + +L + P G L P KL +L ++ +L LP GL N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NQLTELPAGLLN 169
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSG-LHNLR 462
L L+V P L +L + ++L+S+ +L + VSF R L LP G L L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124
Query: 463 QLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLHN 507
+LQE+ + +L + P G L P KL +L ++ +L LP GL N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NQLTELPAGLLN 169
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSG-LHNLR 462
L L+V P L +L + ++L+S+ +L + VSF R L LP G L L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124
Query: 463 QLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLHN 507
+LQE+ + +L + P G L P KL +L ++ L LP GL N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLN 169
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSG-LHNLR 462
L L+V P L +L + ++L+S+ +L + VSF R L LP G L L
Sbjct: 68 LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 125
Query: 463 QLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLHN 507
+LQE+ + +L + P G L P KL +L ++ L LP GL N
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLN 170
>pdb|1XKI|A Chain A, Crystal Structure Of Human Tear LipocalinVON EBNERS GLAND
Protein
pdb|3EYC|A Chain A, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|B Chain B, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|C Chain C, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|D Chain D, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
Length = 162
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 401 PATLESLEVGNLPPSLKSLRVGGCSKLESIAERLD 435
P TL +LE GNL + L G C +++++ E+ D
Sbjct: 34 PMTLTTLEGGNLEAKVTMLISGRCQEVKAVLEKTD 68
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSG-LHNLR 462
L L+V P L +L + ++L+S+ +L + VSF R L LP G L L
Sbjct: 67 LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124
Query: 463 QLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLHN 507
+LQE+ + +L + P G L P KL +L ++ L LP GL N
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNDLTELPAGLLN 169
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 331 DCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSS-SRRYASSLLEELEISGCL 389
+C S + + LP +K L +YL L++ ++ G + ++ R Y L+ ++++
Sbjct: 557 NCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDRAYVRQLVTSMDVT--- 613
Query: 390 SLTCIFSKNELPATLESLEVGNLPPSLKS 418
F LP T +E PP++++
Sbjct: 614 ETNVFFYPRLLPLTKSPVESTTEPPAVRA 642
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,474,668
Number of Sequences: 62578
Number of extensions: 711967
Number of successful extensions: 1507
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 40
length of query: 686
length of database: 14,973,337
effective HSP length: 105
effective length of query: 581
effective length of database: 8,402,647
effective search space: 4881937907
effective search space used: 4881937907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)