Query 048062
Match_columns 686
No_of_seqs 413 out of 3836
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.5E-36 1.2E-40 352.9 27.8 486 118-653 91-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 4E-36 8.7E-41 354.1 24.8 509 86-653 89-607 (968)
3 PLN03210 Resistant to P. syrin 99.9 3.4E-25 7.4E-30 261.2 23.5 311 275-633 591-909 (1153)
4 PLN03210 Resistant to P. syrin 99.9 4.8E-25 1E-29 259.9 23.2 311 216-575 589-908 (1153)
5 KOG0618 Serine/threonine phosp 99.9 2.7E-26 5.9E-31 242.1 -2.4 436 141-679 45-510 (1081)
6 KOG0472 Leucine-rich repeat pr 99.9 1.9E-27 4E-32 228.2 -10.8 466 120-651 45-539 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 3.2E-26 7E-31 219.7 -10.8 455 118-628 66-539 (565)
8 KOG4194 Membrane glycoprotein 99.9 4E-24 8.7E-29 214.5 1.0 340 196-576 82-431 (873)
9 KOG4194 Membrane glycoprotein 99.9 4.6E-23 1E-27 206.9 7.2 359 216-648 78-447 (873)
10 KOG0444 Cytoskeletal regulator 99.9 1E-24 2.3E-29 220.0 -4.6 351 112-527 21-380 (1255)
11 KOG0444 Cytoskeletal regulator 99.9 1.2E-24 2.6E-29 219.6 -5.1 204 415-634 174-379 (1255)
12 KOG0618 Serine/threonine phosp 99.9 7.4E-24 1.6E-28 223.9 -3.2 437 121-631 46-490 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 1.9E-15 4.2E-20 165.9 15.2 256 273-628 201-456 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 2.5E-15 5.4E-20 165.0 13.2 254 217-543 202-456 (788)
15 PRK15370 E3 ubiquitin-protein 99.5 3.4E-14 7.4E-19 157.2 11.0 220 216-494 178-397 (754)
16 PRK15370 E3 ubiquitin-protein 99.5 1.7E-13 3.7E-18 151.8 10.8 182 414-628 241-426 (754)
17 KOG4237 Extracellular matrix p 99.4 2E-14 4.4E-19 139.0 -3.8 126 196-333 71-199 (498)
18 KOG4237 Extracellular matrix p 99.3 9.8E-14 2.1E-18 134.3 -3.4 128 141-305 67-197 (498)
19 KOG0617 Ras suppressor protein 99.3 2.5E-14 5.5E-19 122.4 -7.6 206 434-679 29-241 (264)
20 KOG4658 Apoptotic ATPase [Sign 99.3 1.6E-12 3.4E-17 146.4 4.0 121 198-331 529-651 (889)
21 KOG0617 Ras suppressor protein 99.2 1.9E-13 4.2E-18 117.0 -4.4 156 414-578 33-190 (264)
22 KOG4658 Apoptotic ATPase [Sign 99.2 6.9E-12 1.5E-16 141.3 5.6 93 204-306 559-652 (889)
23 cd00116 LRR_RI Leucine-rich re 99.1 2.5E-11 5.5E-16 124.7 2.6 280 198-520 4-318 (319)
24 KOG4341 F-box protein containi 99.1 6.9E-12 1.5E-16 122.8 -2.4 255 214-492 188-459 (483)
25 KOG4341 F-box protein containi 99.1 1.3E-11 2.8E-16 120.8 -1.3 280 250-575 139-441 (483)
26 cd00116 LRR_RI Leucine-rich re 99.0 1.1E-10 2.3E-15 120.1 3.0 259 241-543 19-318 (319)
27 PRK15386 type III secretion pr 98.8 1.8E-08 4E-13 101.9 10.2 70 462-541 52-121 (426)
28 KOG3207 Beta-tubulin folding c 98.7 5E-09 1.1E-13 103.6 0.8 200 118-353 119-334 (505)
29 KOG0532 Leucine-rich repeat (L 98.6 1.1E-09 2.3E-14 111.7 -4.8 173 417-610 78-250 (722)
30 KOG1259 Nischarin, modulator o 98.6 1.5E-08 3.3E-13 95.2 2.0 132 187-333 279-410 (490)
31 KOG3207 Beta-tubulin folding c 98.6 1.5E-08 3.3E-13 100.3 1.6 58 295-354 120-181 (505)
32 PRK15386 type III secretion pr 98.5 5.9E-07 1.3E-11 91.2 10.5 38 322-362 52-89 (426)
33 KOG1259 Nischarin, modulator o 98.5 4.2E-08 9E-13 92.3 1.1 124 414-543 284-410 (490)
34 PF14580 LRR_9: Leucine-rich r 98.5 1.1E-07 2.3E-12 86.1 3.2 106 461-570 41-150 (175)
35 KOG2120 SCF ubiquitin ligase, 98.4 5.6E-09 1.2E-13 98.1 -5.8 181 250-472 186-373 (419)
36 KOG2120 SCF ubiquitin ligase, 98.4 5.3E-08 1.1E-12 91.7 -1.2 36 249-284 234-271 (419)
37 PF14580 LRR_9: Leucine-rich r 98.3 3.4E-07 7.5E-12 82.8 3.0 100 192-305 42-149 (175)
38 COG4886 Leucine-rich repeat (L 98.3 8.6E-07 1.9E-11 93.9 5.8 145 463-626 141-286 (394)
39 KOG0532 Leucine-rich repeat (L 98.2 9.5E-08 2.1E-12 97.8 -3.0 192 140-355 74-270 (722)
40 COG4886 Leucine-rich repeat (L 98.2 1.9E-06 4.2E-11 91.2 5.2 190 442-651 97-288 (394)
41 KOG1909 Ran GTPase-activating 98.0 1.5E-07 3.2E-12 91.0 -5.3 132 380-519 159-308 (382)
42 PF13855 LRR_8: Leucine rich r 97.9 1.2E-05 2.6E-10 59.4 3.2 57 195-260 4-60 (61)
43 PLN03150 hypothetical protein; 97.9 2.6E-05 5.7E-10 86.7 7.3 106 440-545 420-528 (623)
44 KOG1909 Ran GTPase-activating 97.8 2.9E-06 6.2E-11 82.2 -0.7 67 78-153 18-104 (382)
45 PF13855 LRR_8: Leucine rich r 97.8 2.2E-05 4.8E-10 57.9 3.6 56 439-495 2-59 (61)
46 KOG1859 Leucine-rich repeat pr 97.8 1.7E-06 3.6E-11 91.3 -4.0 198 119-333 83-290 (1096)
47 KOG2982 Uncharacterized conser 97.7 1.6E-05 3.5E-10 75.3 2.2 83 216-305 45-130 (418)
48 KOG1947 Leucine rich repeat pr 97.7 5.4E-06 1.2E-10 90.6 -1.5 87 248-334 187-281 (482)
49 PLN03150 hypothetical protein; 97.6 7.1E-05 1.5E-09 83.3 6.4 112 217-338 419-531 (623)
50 KOG1859 Leucine-rich repeat pr 97.6 1.3E-06 2.8E-11 92.2 -7.5 123 415-543 165-290 (1096)
51 KOG0531 Protein phosphatase 1, 97.6 1.7E-05 3.8E-10 84.1 -0.1 105 434-543 91-197 (414)
52 KOG1947 Leucine rich repeat pr 97.5 2.5E-05 5.5E-10 85.2 0.9 118 213-337 185-310 (482)
53 PF12799 LRR_4: Leucine Rich r 97.4 0.00019 4.1E-09 48.4 3.6 41 249-291 1-41 (44)
54 KOG3665 ZYG-1-like serine/thre 97.4 0.00014 2.9E-09 80.9 4.1 102 193-305 123-229 (699)
55 KOG3665 ZYG-1-like serine/thre 97.3 0.0002 4.4E-09 79.5 4.3 89 76-169 105-200 (699)
56 KOG0531 Protein phosphatase 1, 97.1 0.00011 2.3E-09 78.1 0.0 79 271-354 70-149 (414)
57 KOG2982 Uncharacterized conser 97.1 0.00082 1.8E-08 64.1 5.4 187 436-635 69-267 (418)
58 PF12799 LRR_4: Leucine Rich r 96.9 0.0011 2.4E-08 44.7 3.1 33 415-448 2-34 (44)
59 KOG4579 Leucine-rich repeat (L 96.5 0.00014 3E-09 61.0 -3.9 79 194-283 55-133 (177)
60 KOG1644 U2-associated snRNP A' 96.4 0.006 1.3E-07 55.1 5.2 100 440-543 44-151 (233)
61 KOG1644 U2-associated snRNP A' 96.2 0.0044 9.5E-08 56.0 3.6 97 197-306 47-150 (233)
62 KOG2123 Uncharacterized conser 95.8 0.0035 7.6E-08 59.3 1.3 104 119-255 18-123 (388)
63 KOG2123 Uncharacterized conser 95.4 0.0012 2.7E-08 62.3 -3.2 99 249-351 19-123 (388)
64 KOG2739 Leucine-rich acidic nu 95.2 0.0073 1.6E-07 57.0 1.0 86 212-308 39-128 (260)
65 KOG4579 Leucine-rich repeat (L 94.9 0.0012 2.6E-08 55.6 -4.5 57 461-518 76-132 (177)
66 KOG3864 Uncharacterized conser 94.7 0.0053 1.1E-07 55.5 -1.2 84 486-572 102-188 (221)
67 KOG3864 Uncharacterized conser 94.4 0.0095 2.1E-07 54.0 -0.5 68 211-285 120-188 (221)
68 KOG2739 Leucine-rich acidic nu 94.2 0.024 5.2E-07 53.6 1.9 60 460-520 63-127 (260)
69 COG5238 RNA1 Ran GTPase-activa 93.6 0.066 1.4E-06 50.8 3.5 38 269-306 88-130 (388)
70 COG5238 RNA1 Ran GTPase-activa 93.3 0.1 2.2E-06 49.6 4.2 137 431-570 85-252 (388)
71 PF00560 LRR_1: Leucine Rich R 92.2 0.075 1.6E-06 29.6 1.1 19 251-270 2-20 (22)
72 PF13504 LRR_7: Leucine rich r 91.3 0.14 3E-06 26.4 1.4 14 463-476 2-15 (17)
73 PF13306 LRR_5: Leucine rich r 90.6 0.6 1.3E-05 40.1 5.7 87 204-305 23-112 (129)
74 PF00560 LRR_1: Leucine Rich R 90.5 0.25 5.4E-06 27.5 2.1 17 464-480 2-18 (22)
75 PF13306 LRR_5: Leucine rich r 90.5 0.63 1.4E-05 39.9 5.8 107 207-331 3-112 (129)
76 smart00367 LRR_CC Leucine-rich 79.0 1.9 4.2E-05 25.0 2.1 17 215-231 1-17 (26)
77 smart00369 LRR_TYP Leucine-ric 78.5 1.2 2.6E-05 25.8 1.1 19 462-480 2-20 (26)
78 smart00370 LRR Leucine-rich re 78.5 1.2 2.6E-05 25.8 1.1 19 462-480 2-20 (26)
79 smart00364 LRR_BAC Leucine-ric 61.4 4.9 0.00011 23.4 1.0 17 593-610 2-18 (26)
80 KOG3763 mRNA export factor TAP 59.6 6.5 0.00014 41.9 2.4 71 212-289 214-286 (585)
81 KOG0473 Leucine-rich repeat pr 55.9 1.2 2.7E-05 41.6 -3.1 80 193-284 43-122 (326)
82 KOG0473 Leucine-rich repeat pr 47.0 1.8 3.9E-05 40.5 -3.5 92 204-307 30-122 (326)
83 PF05659 RPW8: Arabidopsis bro 42.8 2.3E+02 0.0049 25.0 9.0 53 4-56 2-54 (147)
84 PF13516 LRR_6: Leucine Rich r 42.1 17 0.00036 20.4 1.3 11 463-473 3-13 (24)
85 KOG3763 mRNA export factor TAP 40.6 18 0.0004 38.6 2.2 59 213-279 241-307 (585)
86 smart00365 LRR_SD22 Leucine-ri 39.7 22 0.00047 20.7 1.5 16 462-477 2-17 (26)
87 PF10883 DUF2681: Protein of u 35.9 2.2E+02 0.0047 22.5 7.3 48 33-89 34-81 (87)
88 PF07047 OPA3: Optic atrophy 3 28.8 3.6E+02 0.0079 23.2 7.9 11 3-13 78-88 (134)
89 PRK13677 hypothetical protein; 26.4 1.8E+02 0.0038 24.2 5.0 39 18-56 84-123 (125)
90 PF05725 FNIP: FNIP Repeat; I 23.6 1.3E+02 0.0029 19.9 3.5 10 530-539 32-41 (44)
91 PF11944 DUF3461: Protein of u 23.3 2.2E+02 0.0048 23.8 5.1 39 18-56 84-123 (125)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.5e-36 Score=352.89 Aligned_cols=486 Identities=14% Similarity=0.117 Sum_probs=369.7
Q ss_pred hcccceeeeccCCcccc----cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhh
Q 048062 118 HLLALEKLVIEGCEELS----VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEE 193 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 193 (686)
.+++|+.|++++|.... ..+..+++|++|++++|......+ ...+++|++|.+.++.. .+..+..+.++++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~----~~~~p~~~~~l~~ 165 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNML----SGEIPNDIGSFSS 165 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCcc----cccCChHHhcCCC
Confidence 47899999999876432 224478899999999887654222 23478899886655432 3445557888999
Q ss_pred hhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCC
Q 048062 194 LILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLS 273 (686)
Q Consensus 194 L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~ 273 (686)
|+.+++++|.+....+..++.+++|++|++++|.....+|.. ++.+ ++|++|++++|.....+|..++.++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-----LGQM----KSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-----HcCc----CCccEEECcCCccCCcCChhHhcCC
Confidence 999999999988776777889999999999988755556655 7777 8999999999877668888899999
Q ss_pred CccEEeccCCCCCccCCC-CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc-cCCCcccEEe
Q 048062 274 SLREIEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV-QLPPSLKRLE 351 (686)
Q Consensus 274 ~L~~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~ 351 (686)
+|++|++++|.....+|. ++.+++|+.|++++|.....+|..+. ++++|++|++++|.....++.. ..+++|+.|+
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh--hccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 999999999875455664 77889999999998766566777766 6889999999987644444433 5678899999
Q ss_pred eccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchH
Q 048062 352 IYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIA 431 (686)
Q Consensus 352 l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~ 431 (686)
++++.....+| ..+.. +++|+.|++++| .+.. .+|..+..+ ++|+.|++++|.....+|
T Consensus 315 l~~n~~~~~~~--~~~~~-------l~~L~~L~L~~n-~l~~-----~~p~~l~~~------~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 315 LFSNNFTGKIP--VALTS-------LPRLQVLQLWSN-KFSG-----EIPKNLGKH------NNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CCCCccCCcCC--hhHhc-------CCCCCEEECcCC-CCcC-----cCChHHhCC------CCCcEEECCCCeeEeeCC
Confidence 98876544444 33332 456999999885 3332 344554333 689999999987667788
Q ss_pred HhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceee-ecCCCCCCCCCccEEeeccccccccccccccCCCC
Q 048062 432 ERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLV-SFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTS 510 (686)
Q Consensus 432 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~ 510 (686)
..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+. .+|.....+++|+.|++++|.....+|..+..+++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 88888899999999998888888888888899999999999776 56766777789999999987666667777778899
Q ss_pred CCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCC
Q 048062 511 LQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLP 590 (686)
Q Consensus 511 L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 590 (686)
|+.|++++|.....+|.....++|++|++++|. +.+.+|. .+..+++|+.|++++|.-...+|..++
T Consensus 454 L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~--------- 520 (968)
T PLN00113 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAVPR---KLGSLSELMQLKLSENKLSGEIPDELS--------- 520 (968)
T ss_pred CcEEECcCceeeeecCcccccccceEEECcCCc-cCCccCh---hhhhhhccCEEECcCCcceeeCChHHc---------
Confidence 999999998777666665556789999999987 5545555 677888999999998755556776653
Q ss_pred CccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCC-CCcCccceeeecCChhH
Q 048062 591 LPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEK-GLPSSLLLLIIWECPLI 653 (686)
Q Consensus 591 ~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l 653 (686)
.+++|++|++++|.-...+|..+..+++|++|++++|.....+|.. .-+++|+.|++++|+..
T Consensus 521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 5678888899887666677877888888999999888766677753 33677888888888643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-36 Score=354.09 Aligned_cols=509 Identities=16% Similarity=0.116 Sum_probs=403.3
Q ss_pred ccchHhHhhhhccCCCCCcccCCCCcccccch----hcccceeeeccCCcccc-cccCCCCcceEEEEcCccce-eEccc
Q 048062 86 FQTEAFRRKLVLGNREPAAAHDQPSSSRTRTK----HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKV-VWRSA 159 (686)
Q Consensus 86 l~~~~~l~~l~i~~~~~~~~~~~~~~~~~~p~----~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~ 159 (686)
+...++++.|+++++. ..+.+|. .+.+|+.|++++|.... .+.+.+++|++|++++|... ..+..
T Consensus 89 ~~~l~~L~~L~Ls~n~---------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 89 IFRLPYIQTINLSNNQ---------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred HhCCCCCCEEECCCCc---------cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH
Confidence 3445567777777663 2234554 46899999999987654 55567999999999999876 36677
Q ss_pred cccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHH
Q 048062 160 TDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKD 239 (686)
Q Consensus 160 ~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~ 239 (686)
+..+++|++|.+.++.. .+..+..+.++++|+.+++++|.+....+..++.+++|++|++++|.....+|..
T Consensus 160 ~~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---- 231 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVL----VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE---- 231 (968)
T ss_pred HhcCCCCCEEECccCcc----cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh----
Confidence 88899999997765432 3345558899999999999999998877777899999999999999754566665
Q ss_pred HHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCC-CCCCCCCcEEeccccccccccchhhhc
Q 048062 240 QQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSLPQAWMC 318 (686)
Q Consensus 240 ~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~~~ 318 (686)
++.+ ++|++|++++|.....+|..++.+++|++|++++|.....+|. +..+++|+.|++++|.....+|..+.
T Consensus 232 -l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~- 305 (968)
T PLN00113 232 -IGGL----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI- 305 (968)
T ss_pred -HhcC----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-
Confidence 7888 9999999999987678899999999999999999975556664 77899999999999876667777666
Q ss_pred ccCCCccEEeEecCCCCcccccc-cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccC
Q 048062 319 DNNSSLEILKIWDCHSLTYIAGV-QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSK 397 (686)
Q Consensus 319 ~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 397 (686)
++++|+.|++++|.....++.. ..+++|+.|++++|.....+| ..+.. .++|+.|++++| .+..
T Consensus 306 -~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~-------~~~L~~L~Ls~n-~l~~---- 370 (968)
T PLN00113 306 -QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--KNLGK-------HNNLTVLDLSTN-NLTG---- 370 (968)
T ss_pred -CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC--hHHhC-------CCCCcEEECCCC-eeEe----
Confidence 7899999999998754444433 568899999999976554555 33332 457999999984 4443
Q ss_pred CCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceee-e
Q 048062 398 NELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLV-S 476 (686)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~ 476 (686)
.+|.++..+ ++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.+. .
T Consensus 371 -~~p~~~~~~------~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 371 -EIPEGLCSS------GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred -eCChhHhCc------CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 234443322 68999999998877788999999999999999999988888888999999999999999777 4
Q ss_pred cCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccc
Q 048062 477 FPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRG 555 (686)
Q Consensus 477 l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~ 555 (686)
+|.....+++|+.|++++|.....+|..+ ..++|+.|++++|.....+|.. ..+++|++|++++|. +.+.+|. .
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~---~ 518 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPD---E 518 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCc-ceeeCCh---H
Confidence 55555667899999999988777777654 5689999999998765555543 456799999999998 6656776 7
Q ss_pred cCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCC
Q 048062 556 FHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPE 635 (686)
Q Consensus 556 l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 635 (686)
+..+++|+.|++++|.-...+|..+. .+++|++|++++|+....+|..+..+++|+.|++++|+-...+|.
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~~~~---------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPASFS---------EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred HcCccCCCEEECCCCcccccCChhHh---------CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 88999999999999755556666553 678999999999877778999889999999999999998888997
Q ss_pred CCCcCccceeeecCChhH
Q 048062 636 KGLPSSLLLLIIWECPLI 653 (686)
Q Consensus 636 ~~~~~~L~~L~i~~c~~l 653 (686)
.+.+.++....+.++|.+
T Consensus 590 ~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 590 TGAFLAINASAVAGNIDL 607 (968)
T ss_pred cchhcccChhhhcCCccc
Confidence 766666666666666544
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.4e-25 Score=261.20 Aligned_cols=311 Identities=24% Similarity=0.331 Sum_probs=150.2
Q ss_pred ccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeecc
Q 048062 275 LREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYL 354 (686)
Q Consensus 275 L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 354 (686)
|+.|++.+++ ++.+|....+.+|+.|++.++ .++.++..+. .+++|+.|+++++..++.+|....+++|+.|++.+
T Consensus 591 Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~~--~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYP-LRCMPSNFRPENLVKLQMQGS-KLEKLWDGVH--SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCC-CCCCCCcCCccCCcEEECcCc-cccccccccc--cCCCCCEEECCCCCCcCcCCccccCCcccEEEecC
Confidence 4444444443 344444333444444444442 2334433332 34444555544444444444444444455555554
Q ss_pred ccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhh
Q 048062 355 CYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERL 434 (686)
Q Consensus 355 c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l 434 (686)
|..+..+| ..+.. +++|+.|++++|+.++. +|. +.-.++|+.|++++|..++.+|..
T Consensus 667 c~~L~~lp--~si~~-------L~~L~~L~L~~c~~L~~-Lp~------------~i~l~sL~~L~Lsgc~~L~~~p~~- 723 (1153)
T PLN03210 667 CSSLVELP--SSIQY-------LNKLEDLDMSRCENLEI-LPT------------GINLKSLYRLNLSGCSRLKSFPDI- 723 (1153)
T ss_pred CCCccccc--hhhhc-------cCCCCEEeCCCCCCcCc-cCC------------cCCCCCCCEEeCCCCCCccccccc-
Confidence 44444444 22222 23345555555444444 321 000134555555555444444421
Q ss_pred cCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC--------CCCCCCCccEEeecccccccccccccc
Q 048062 435 DNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ--------GGLPCAKLMRLEISYCKRLQVLPKGLH 506 (686)
Q Consensus 435 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--------~~~~~~~L~~L~l~~~~~l~~l~~~l~ 506 (686)
..+|+.|+++++. +..+|..+ .+++|++|.+.++....++. ....+++|+.|++++|+.+..+|..++
T Consensus 724 --~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 724 --STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred --cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 2344455554433 23333322 34455555554432111110 111224566666666666666666666
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCC
Q 048062 507 NLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSG 586 (686)
Q Consensus 507 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 586 (686)
++++|+.|++++|+.++.+|....+++|++|++++|..+. .+|. ..++|+.|++++ +.++.+|...+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~------~~~nL~~L~Ls~-n~i~~iP~si~----- 866 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-TFPD------ISTNISDLNLSR-TGIEEVPWWIE----- 866 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-cccc------cccccCEeECCC-CCCccChHHHh-----
Confidence 6666666666666666666554445566666666665544 2322 124566666665 35555554442
Q ss_pred CCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcC
Q 048062 587 TTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYF 633 (686)
Q Consensus 587 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l 633 (686)
.+++|++|++.+|++++.+|..+..+++|+.+++.+|+.+..+
T Consensus 867 ----~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 867 ----KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ----cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 4456666666666666666655556666666666666666544
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=4.8e-25 Score=259.95 Aligned_cols=311 Identities=22% Similarity=0.347 Sum_probs=177.8
Q ss_pred cCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCC
Q 048062 216 CSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP 295 (686)
Q Consensus 216 ~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l 295 (686)
++|+.|.+.+++ ++.+|.. + .. .+|++|++.++. +..+|.++..+++|+.|++++|..++.+|.+..+
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~-----f-~~----~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l 656 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSN-----F-RP----ENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA 656 (1153)
T ss_pred cccEEEEecCCC-CCCCCCc-----C-Cc----cCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccC
Confidence 458888887775 7777664 2 12 678888888765 5777777777888888888877777777777778
Q ss_pred CCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccc
Q 048062 296 SKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRY 375 (686)
Q Consensus 296 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 375 (686)
++|+.|++++|..+..+|..+. ++++|+.|++++|..++.+|....+++|+.|++++|..+..+| ...
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~-------- 724 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP--DIS-------- 724 (1153)
T ss_pred CcccEEEecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--ccc--------
Confidence 8888888888877777777665 6778888888888777777766667777777777777666665 211
Q ss_pred cCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccc------h-HHhhcCCCCCCeeeeccc
Q 048062 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLES------I-AERLDNNTSLETIAVSFC 448 (686)
Q Consensus 376 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~------l-~~~l~~l~~L~~L~l~~~ 448 (686)
++|+.|++++ +.++. +| ..+ .+ ++|++|.+.++..... + +......++|+.|++++|
T Consensus 725 --~nL~~L~L~~-n~i~~-lP-----~~~------~l-~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 725 --TNISWLDLDE-TAIEE-FP-----SNL------RL-ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred --CCcCeeecCC-Ccccc-cc-----ccc------cc-cccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 2477777766 33443 33 211 11 4566666655432110 0 111122345555555555
Q ss_pred CCcccccccccCCCCCcEEEecCc-eeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCC
Q 048062 449 RNLKILPSGLHNLRQLQEIGIWEC-DLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEE 527 (686)
Q Consensus 449 ~~~~~~~~~l~~l~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~ 527 (686)
..+..+|..++++++|+.|++++| .+..+|... .+++|+.|++++|..+..+|.. .++|+.|+++++ .++.+|.
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~ 863 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPW 863 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChH
Confidence 555555555555555555555555 444444433 3345555555555544444431 234445555442 3333332
Q ss_pred C-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceE
Q 048062 528 D-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVS 575 (686)
Q Consensus 528 ~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~ 575 (686)
. ..+++|+.|++.+|..++ .++. ....+++|+.+++++|.++..
T Consensus 864 si~~l~~L~~L~L~~C~~L~-~l~~---~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQ-RVSL---NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcC-ccCc---ccccccCCCeeecCCCccccc
Confidence 1 233445555555544444 2332 234444444555555544443
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-26 Score=242.09 Aligned_cols=436 Identities=19% Similarity=0.195 Sum_probs=275.9
Q ss_pred CcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCccE
Q 048062 141 PALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKS 220 (686)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 220 (686)
-.|+.|+++++....+|. .+..+.+|+.++++.|.+..++. ...++.+|++
T Consensus 45 v~L~~l~lsnn~~~~fp~----------------------------~it~l~~L~~ln~s~n~i~~vp~-s~~~~~~l~~ 95 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPI----------------------------QITLLSHLRQLNLSRNYIRSVPS-SCSNMRNLQY 95 (1081)
T ss_pred eeeEEeeccccccccCCc----------------------------hhhhHHHHhhcccchhhHhhCch-hhhhhhcchh
Confidence 348888888877665444 45566677777888899988884 4588999999
Q ss_pred eecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCcE
Q 048062 221 LEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKK 300 (686)
Q Consensus 221 L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~ 300 (686)
|.|.++. +..+|.+ +..+ .+|++|++++|.. ..+|.-+..++.+..+..++|.++..++..+ ++.
T Consensus 96 lnL~~n~-l~~lP~~-----~~~l----knl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~----ik~ 160 (1081)
T KOG0618|consen 96 LNLKNNR-LQSLPAS-----ISEL----KNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTS----IKK 160 (1081)
T ss_pred heeccch-hhcCchh-----HHhh----hcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcccc----chh
Confidence 9998764 8888887 8888 9999999999875 8889888899999999999885555555433 677
Q ss_pred EeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccccCCCc
Q 048062 301 IQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLL 380 (686)
Q Consensus 301 L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L 380 (686)
+++..+..-..++.... .+.. .|++.++. +. ......+++|+.+.... +.+..+. ...+++
T Consensus 161 ~~l~~n~l~~~~~~~i~--~l~~--~ldLr~N~-~~-~~dls~~~~l~~l~c~r-n~ls~l~------------~~g~~l 221 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIY--NLTH--QLDLRYNE-ME-VLDLSNLANLEVLHCER-NQLSELE------------ISGPSL 221 (1081)
T ss_pred hhhhhhhcccchhcchh--hhhe--eeecccch-hh-hhhhhhccchhhhhhhh-cccceEE------------ecCcch
Confidence 77766555555555444 2222 47777754 32 22223444555544432 2222222 112347
Q ss_pred cEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccC
Q 048062 381 EELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHN 460 (686)
Q Consensus 381 ~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 460 (686)
+.|+...|.-.+. . ....|.+|++++++. ..+..+|++++.+.+|+.++..+|.. ..+|..+..
T Consensus 222 ~~L~a~~n~l~~~--~------------~~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~ 285 (1081)
T KOG0618|consen 222 TALYADHNPLTTL--D------------VHPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANHNRL-VALPLRISR 285 (1081)
T ss_pred heeeeccCcceee--c------------cccccccceeeecch-hhhhcchHHHHhcccceEecccchhH-HhhHHHHhh
Confidence 7777777543321 1 344567888888888 46777888888899999998888665 566677777
Q ss_pred CCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccC-CC-CCCeEEecCCCCCCCCCC-----------
Q 048062 461 LRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHN-LT-SLQQLRIGKGVELPSLEE----------- 527 (686)
Q Consensus 461 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~-l~-~L~~L~l~~c~~l~~~~~----------- 527 (686)
..+|+.|.+..|.++.+|+......+|++|++.. +++..+|+.+-. .. +|+.|+.+. .++...|.
T Consensus 286 ~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQE 363 (1081)
T ss_pred hhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHH
Confidence 7888888888888888888777777888888887 577777763211 11 244444443 23333332
Q ss_pred ---------------CCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCc
Q 048062 528 ---------------DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLP 592 (686)
Q Consensus 528 ---------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 592 (686)
.....+|+.|++++|. +. .+|. ..+.++..|++|+++| ++++.+|... ..+
T Consensus 364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~-~fpa--s~~~kle~LeeL~LSG-NkL~~Lp~tv---------a~~ 429 (1081)
T KOG0618|consen 364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LN-SFPA--SKLRKLEELEELNLSG-NKLTTLPDTV---------ANL 429 (1081)
T ss_pred HHHhcCcccccchhhhccccceeeeeecccc-cc-cCCH--HHHhchHHhHHHhccc-chhhhhhHHH---------Hhh
Confidence 2233455555555554 33 3444 4455555555555555 4555555444 244
Q ss_pred cccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCC-CCCc-CccceeeecCChhHHHHhhcCCCCCccccCC
Q 048062 593 ASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPE-KGLP-SSLLLLIIWECPLIVEKCRKDGGQYWDLLTH 670 (686)
Q Consensus 593 ~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~-~~~~-~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~ 670 (686)
..|++|...+ +.+.++| .+..++.|+.++++. ++|..+.- ...+ ++||+|+++|++++. .+.+.++.+++
T Consensus 430 ~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 430 GRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHKTLKVLKS 501 (1081)
T ss_pred hhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc-----cchhhhHHhhh
Confidence 5555555555 5555666 556667777777764 55555321 2334 677777777776531 13344555555
Q ss_pred cceEEecce
Q 048062 671 IPRVEIDGK 679 (686)
Q Consensus 671 i~~~~~~~~ 679 (686)
+...+++=+
T Consensus 502 l~~~~i~~~ 510 (1081)
T KOG0618|consen 502 LSQMDITLN 510 (1081)
T ss_pred hhheecccC
Confidence 555544433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.9e-27 Score=228.16 Aligned_cols=466 Identities=19% Similarity=0.240 Sum_probs=242.1
Q ss_pred ccceeeeccCCcccc--cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhc
Q 048062 120 LALEKLVIEGCEELS--VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILS 197 (686)
Q Consensus 120 ~~L~~L~l~~c~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l 197 (686)
..+.++.+++..... +.+..++.|.+|.+.+++..+.|+.++.+..++.+.+....-.. .|+.+..+.++..+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~-----lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE-----LPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh-----ccHHHhhhhhhhhh
Confidence 456667777665554 67778888899999888877777765555555544222221111 12234444444444
Q ss_pred hhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccE
Q 048062 198 TKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLRE 277 (686)
Q Consensus 198 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~ 277 (686)
+.++|.+...+++. +.+..|+.++-.++. +..+|.. +..+ .+|..+++.++. +..+|+..-.++.|++
T Consensus 120 ~~s~n~~~el~~~i-~~~~~l~dl~~~~N~-i~slp~~-----~~~~----~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 120 DCSSNELKELPDSI-GRLLDLEDLDATNNQ-ISSLPED-----MVNL----SKLSKLDLEGNK-LKALPENHIAMKRLKH 187 (565)
T ss_pred hccccceeecCchH-HHHhhhhhhhccccc-cccCchH-----HHHH----HHHHHhhccccc-hhhCCHHHHHHHHHHh
Confidence 55555544444432 444445555444442 4444443 3333 444455555543 2344433333455555
Q ss_pred EeccCCCCCccCCC-CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEeecc
Q 048062 278 IEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYL 354 (686)
Q Consensus 278 L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~ 354 (686)
|+...|- ++.+|+ ++.+.+|+.|++.. +.+..+| .|. ++..|.+|++..+. ++-++.. ..++++..|++.+
T Consensus 188 ld~~~N~-L~tlP~~lg~l~~L~~LyL~~-Nki~~lP-ef~--gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 188 LDCNSNL-LETLPPELGGLESLELLYLRR-NKIRFLP-EFP--GCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred cccchhh-hhcCChhhcchhhhHHHHhhh-cccccCC-CCC--ccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccc
Confidence 5544442 444443 44555555555554 3344444 222 23444444443322 3333322 2344444444444
Q ss_pred ccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhh
Q 048062 355 CYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERL 434 (686)
Q Consensus 355 c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l 434 (686)
++++.+| .++.. +.+|+.|++++ +.++. +| .. .|.+ .|+.|.+.|++ ++.+...+
T Consensus 262 -Nklke~P--de~cl-------LrsL~rLDlSN-N~is~-Lp-----~s-----Lgnl--hL~~L~leGNP-lrTiRr~i 316 (565)
T KOG0472|consen 262 -NKLKEVP--DEICL-------LRSLERLDLSN-NDISS-LP-----YS-----LGNL--HLKFLALEGNP-LRTIRREI 316 (565)
T ss_pred -cccccCc--hHHHH-------hhhhhhhcccC-Ccccc-CC-----cc-----cccc--eeeehhhcCCc-hHHHHHHH
Confidence 3444444 33332 22344444444 33333 21 11 1222 34444444432 11111111
Q ss_pred cCCCC---CCeee-------ecccCCcc----c-cccc---ccCCCCCcEEEecCceeeecCCCCCCCC---CccEEeec
Q 048062 435 DNNTS---LETIA-------VSFCRNLK----I-LPSG---LHNLRQLQEIGIWECDLVSFPQGGLPCA---KLMRLEIS 493 (686)
Q Consensus 435 ~~l~~---L~~L~-------l~~~~~~~----~-~~~~---l~~l~~L~~L~l~~~~l~~l~~~~~~~~---~L~~L~l~ 493 (686)
-+... |++|. ++.....+ . .+.. ...+.+.+.|++++-+++.+|...+... -....+++
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence 11110 00000 00000000 0 0000 1123456777777767777776333222 25667777
Q ss_pred cccccccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCC
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDD 572 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~ 572 (686)
. +.+.++|..+..+..+.+.-+..++.+..+|.. ..+++|..|++++|. +- .+|. .++.+..|+.|+|+. +.
T Consensus 397 k-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln-~LP~---e~~~lv~Lq~LnlS~-Nr 469 (565)
T KOG0472|consen 397 K-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LN-DLPE---EMGSLVRLQTLNLSF-NR 469 (565)
T ss_pred c-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hh-hcch---hhhhhhhhheecccc-cc
Confidence 7 566777777766666666555554555555443 346788888998887 55 5666 677788899999988 57
Q ss_pred ceEcCCCcCCCCCCCCCCCccccceeeccccccccccccc-cCCCCCcCEEeecCCCCCCcCCCC-CCcCccceeeecCC
Q 048062 573 VVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS-IVDLQYLTSLYLLECPKLKYFPEK-GLPSSLLLLIIWEC 650 (686)
Q Consensus 573 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~L~i~~c 650 (686)
+..+|.... .+..|+++-.++ +.++.++.. +..+.+|++|++.+ +.++.+|.. +.+++|+.|.++|+
T Consensus 470 Fr~lP~~~y---------~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 470 FRMLPECLY---------ELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred cccchHHHh---------hHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCC
Confidence 888887552 444555555555 778888765 77788888888877 567777764 66788888888888
Q ss_pred h
Q 048062 651 P 651 (686)
Q Consensus 651 ~ 651 (686)
|
T Consensus 539 p 539 (565)
T KOG0472|consen 539 P 539 (565)
T ss_pred c
Confidence 6
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3.2e-26 Score=219.69 Aligned_cols=455 Identities=20% Similarity=0.232 Sum_probs=316.6
Q ss_pred hcccceeeeccCCcccc--cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhh
Q 048062 118 HLLALEKLVIEGCEELS--VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI 195 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (686)
.++.+.+|.+++..... ++++.+..++.|+.+.++..++|..+....+|+.+.+......... +.+..+..+.
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~-----~~i~~~~~l~ 140 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELP-----DSIGRLLDLE 140 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecC-----chHHHHhhhh
Confidence 36777888888776555 6777788888888888888888888887888888755444333333 3777888888
Q ss_pred hchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCc
Q 048062 196 LSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSL 275 (686)
Q Consensus 196 ~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L 275 (686)
.++..+|++...+++. ..+.+|..+++.++. ++.+|+.. +. + +.|++|+...|. ++.+|+.++.+.+|
T Consensus 141 dl~~~~N~i~slp~~~-~~~~~l~~l~~~~n~-l~~l~~~~----i~-m----~~L~~ld~~~N~-L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 141 DLDATNNQISSLPEDM-VNLSKLSKLDLEGNK-LKALPENH----IA-M----KRLKHLDCNSNL-LETLPPELGGLESL 208 (565)
T ss_pred hhhccccccccCchHH-HHHHHHHHhhccccc-hhhCCHHH----HH-H----HHHHhcccchhh-hhcCChhhcchhhh
Confidence 8899999999888875 678889999998875 88888762 33 7 889999988874 58999999999999
Q ss_pred cEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc-cCCCcccEEeecc
Q 048062 276 REIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV-QLPPSLKRLEIYL 354 (686)
Q Consensus 276 ~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~ 354 (686)
..|++..|. +..+|++..+..|+.|+++. +.++.+|.... .++++|..|++.++. +++.|.. ..+.+|.+|++++
T Consensus 209 ~~LyL~~Nk-i~~lPef~gcs~L~Elh~g~-N~i~~lpae~~-~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 209 ELLYLRRNK-IRFLPEFPGCSLLKELHVGE-NQIEMLPAEHL-KHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred HHHHhhhcc-cccCCCCCccHHHHHHHhcc-cHHHhhHHHHh-cccccceeeeccccc-cccCchHHHHhhhhhhhcccC
Confidence 999999985 88899999999999999988 67888887776 578999999998865 8888776 5678899999987
Q ss_pred ccCcccccccccccccccccccCCCccEEeccCCcccccc----ccCCCchhhhhhhhccCCCCCCceEEecCCCCcc--
Q 048062 355 CYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCI----FSKNELPATLESLEVGNLPPSLKSLRVGGCSKLE-- 428 (686)
Q Consensus 355 c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-- 428 (686)
+.+..+| .++.+ + +|+.|.+.|. -+..+ +.. .....+..+.. ..+.=.++....-+
T Consensus 285 -N~is~Lp--~sLgn-------l-hL~~L~leGN-PlrTiRr~ii~~-gT~~vLKyLrs-----~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 285 -NDISSLP--YSLGN-------L-HLKFLALEGN-PLRTIRREIISK-GTQEVLKYLRS-----KIKDDGLSQSEGGTET 346 (565)
T ss_pred -CccccCC--ccccc-------c-eeeehhhcCC-chHHHHHHHHcc-cHHHHHHHHHH-----hhccCCCCCCcccccc
Confidence 5677777 33332 1 4777777773 22220 110 00111111110 00000000000000
Q ss_pred --c----hHHhhcCCCCCCeeeecccCCcccccccccCCC---CCcEEEecCceeeecCCCCCCCCCccEEeeccccccc
Q 048062 429 --S----IAERLDNNTSLETIAVSFCRNLKILPSGLHNLR---QLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQ 499 (686)
Q Consensus 429 --~----l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~---~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~ 499 (686)
. .........+.+.|++++ ..++.+|.....-. -....++++|++.++|.....+..+.+.-+..++.+.
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 0 011123345667777766 34455554433222 2677888888888888766555555554444546666
Q ss_pred cccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCC
Q 048062 500 VLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPL 578 (686)
Q Consensus 500 ~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~ 578 (686)
.+|..+..+++|..|++++ +.+.++|.+ +....|++|+++.|+ .. .+|. ....+..|+.+-.++ +.+.+++.
T Consensus 426 fv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr-~lP~---~~y~lq~lEtllas~-nqi~~vd~ 498 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNR-FR-MLPE---CLYELQTLETLLASN-NQIGSVDP 498 (565)
T ss_pred cchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccc-cc-cchH---HHhhHHHHHHHHhcc-ccccccCh
Confidence 6677788888888888888 457777766 345678888888885 44 4554 555566667666665 67888776
Q ss_pred CcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCC
Q 048062 579 KADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECP 628 (686)
Q Consensus 579 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 628 (686)
.. ...+..|.+|++.+ +.++.+|..++++.+|++|+++++|
T Consensus 499 ~~--------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 SG--------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HH--------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 42 14778899999998 8999999999999999999999965
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4e-24 Score=214.48 Aligned_cols=340 Identities=16% Similarity=0.216 Sum_probs=191.6
Q ss_pred hchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCc
Q 048062 196 LSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSL 275 (686)
Q Consensus 196 ~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L 275 (686)
.+++++|++..+....|.++++|+++.+.++. ++.+|.. .... .+|+.|+|.+|..-+.-...+..++.|
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f-----~~~s----ghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRF-----GHES----GHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccc-----cccc----cceeEEeeeccccccccHHHHHhHhhh
Confidence 46888899988888888999999999998885 8888775 2333 679999999886533334467788889
Q ss_pred cEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEe
Q 048062 276 REIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLE 351 (686)
Q Consensus 276 ~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~ 351 (686)
+.|||+.|. +..+|. +..-.++++|++++ +.++.+..... .++.+|..|.++.+. ++.+|.. ..++.|+.|+
T Consensus 152 rslDLSrN~-is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 152 RSLDLSRNL-ISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhch-hhcccCCCCCCCCCceEEeecc-ccccccccccc-cccchheeeecccCc-ccccCHHHhhhcchhhhhh
Confidence 999999874 666664 33346788888888 45666554333 256778888887754 6666654 2356666666
Q ss_pred eccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchH
Q 048062 352 IYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIA 431 (686)
Q Consensus 352 l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~ 431 (686)
+.. +.+..+.. ..+.. +++|+.|.+.. +++.. +..|.|- .+ .++++|++..|.....-.
T Consensus 228 Lnr-N~irive~-ltFqg-------L~Sl~nlklqr-N~I~k-L~DG~Fy---------~l-~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 228 LNR-NRIRIVEG-LTFQG-------LPSLQNLKLQR-NDISK-LDDGAFY---------GL-EKMEHLNLETNRLQAVNE 286 (873)
T ss_pred ccc-cceeeehh-hhhcC-------chhhhhhhhhh-cCccc-ccCccee---------ee-cccceeecccchhhhhhc
Confidence 654 22222210 00000 12355555544 33333 2211110 11 455666666543222223
Q ss_pred HhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCC-CCCCccEEeeccccccccccc-cccCCC
Q 048062 432 ERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPK-GLHNLT 509 (686)
Q Consensus 432 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~ 509 (686)
.++.++..|++|++++|..-..-+..+...++|+.|++++|.++.+++..+ .+..|+.|.++. +.+..+.+ .|..++
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLS 365 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhh
Confidence 345556666666666655544444445555666666666666665555332 234566666655 34444433 445556
Q ss_pred CCCeEEecCCCCCCCCCCC----CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEc
Q 048062 510 SLQQLRIGKGVELPSLEED----GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSF 576 (686)
Q Consensus 510 ~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~ 576 (686)
+|++|+++++..--.+... ..+++|+.|++.+|. ++ .++. ..+.++++|++|++.+ +.+.++
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk-~I~k--rAfsgl~~LE~LdL~~-NaiaSI 431 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LK-SIPK--RAFSGLEALEHLDLGD-NAIASI 431 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-ee-ecch--hhhccCcccceecCCC-Ccceee
Confidence 6666666553211111111 124556666666655 44 4444 3555666666666665 334443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-23 Score=206.94 Aligned_cols=359 Identities=16% Similarity=0.234 Sum_probs=207.7
Q ss_pred cCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCC--CC
Q 048062 216 CSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA 293 (686)
Q Consensus 216 ~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~ 293 (686)
+.-+.|+++++. +.++.. .++.++ ++|+++++..|. ++.+|.......+|+.|+|.+|. +.++.. +.
T Consensus 78 ~~t~~LdlsnNk-l~~id~----~~f~nl----~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~ 146 (873)
T KOG4194|consen 78 SQTQTLDLSNNK-LSHIDF----EFFYNL----PNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELS 146 (873)
T ss_pred cceeeeeccccc-cccCcH----HHHhcC----Ccceeeeeccch-hhhcccccccccceeEEeeeccc-cccccHHHHH
Confidence 344456666653 555433 234555 666666666653 46666555555556666666653 444332 44
Q ss_pred CCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEeeccccCcccccccccccccc
Q 048062 294 LPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYLCYNLRTLTVEEGIQCSS 371 (686)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~ 371 (686)
.++.|+.|+++. +.+..++..... .-.++++|+++++. ++.+... ..+.
T Consensus 147 ~l~alrslDLSr-N~is~i~~~sfp-~~~ni~~L~La~N~-It~l~~~~F~~ln-------------------------- 197 (873)
T KOG4194|consen 147 ALPALRSLDLSR-NLISEIPKPSFP-AKVNIKKLNLASNR-ITTLETGHFDSLN-------------------------- 197 (873)
T ss_pred hHhhhhhhhhhh-chhhcccCCCCC-CCCCceEEeecccc-ccccccccccccc--------------------------
Confidence 455666666665 334444432210 12345555555532 3333222 1122
Q ss_pred cccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccch-HHhhcCCCCCCeeeecccCC
Q 048062 372 SRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESI-AERLDNNTSLETIAVSFCRN 450 (686)
Q Consensus 372 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~ 450 (686)
+|..|.++. ++++. +|. ..+.. + +.|+.|++..| .++.. .-.+..+++|+.|.+..|..
T Consensus 198 -------sL~tlkLsr-Nritt-Lp~----r~Fk~-----L-~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 198 -------SLLTLKLSR-NRITT-LPQ----RSFKR-----L-PKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred -------hheeeeccc-Ccccc-cCH----HHhhh-----c-chhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCc
Confidence 355555555 45554 331 11111 2 56677777664 33322 33466777777777777655
Q ss_pred cccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCCC
Q 048062 451 LKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDG 529 (686)
Q Consensus 451 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 529 (686)
..--...|..+.++++|+++.|+++.+.. +.+.+.+|+.|+++.+.--..-++++..+++|++|++++ +.++.++...
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~s 336 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGS 336 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhH
Confidence 44333556667777777777777776655 445566777777777433333345667777888888877 4666666654
Q ss_pred C--CCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCce-EcCCCcCCCCCCCCCCCccccceeeccccccc
Q 048062 530 L--PTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVV-SFPLKADDKGSGTTLPLPASLTTLWIFNFPNL 606 (686)
Q Consensus 530 ~--~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 606 (686)
+ +..|++|.+++|. +. .+.+ ..+..+++|++|+++++ .+. .+.+.. .....+++|+.|.+.+ +++
T Consensus 337 f~~L~~Le~LnLs~Ns-i~-~l~e--~af~~lssL~~LdLr~N-~ls~~IEDaa------~~f~gl~~LrkL~l~g-Nql 404 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNS-ID-HLAE--GAFVGLSSLHKLDLRSN-ELSWCIEDAA------VAFNGLPSLRKLRLTG-NQL 404 (873)
T ss_pred HHHHHHhhhhcccccc-hH-HHHh--hHHHHhhhhhhhcCcCC-eEEEEEecch------hhhccchhhhheeecC-cee
Confidence 3 5677888888877 55 4444 46777888888888873 332 232211 1222467888888888 788
Q ss_pred ccccc-ccCCCCCcCEEeecCCCCCCcCCCCCC-cCccceeeec
Q 048062 607 ERLSS-SIVDLQYLTSLYLLECPKLKYFPEKGL-PSSLLLLIIW 648 (686)
Q Consensus 607 ~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~-~~~L~~L~i~ 648 (686)
++||. .|.+++.|++|++.+ +.+.++....+ +..|++|.+.
T Consensus 405 k~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred eecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 88874 567788888888887 45777665544 3367776554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1e-24 Score=220.01 Aligned_cols=351 Identities=19% Similarity=0.255 Sum_probs=245.2
Q ss_pred ccccchh---cccceeeeccCCcccc--cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCC
Q 048062 112 SRTRTKH---LLALEKLVIEGCEELS--VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKP 186 (686)
Q Consensus 112 ~~~~p~~---l~~L~~L~l~~c~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~ 186 (686)
+..||.. +..+++|.+..-.... ..++.+.+|++|.+.+++.+++.+.+..++.|+.+.+.+ .+.-...+|+
T Consensus 21 g~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~---N~LKnsGiP~ 97 (1255)
T KOG0444|consen 21 GDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD---NNLKNSGIPT 97 (1255)
T ss_pred CCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc---cccccCCCCc
Confidence 4567765 6778888887644333 678889999999999999988888888888888884443 3334445666
Q ss_pred CccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccc
Q 048062 187 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP 266 (686)
Q Consensus 187 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p 266 (686)
.+-.+..|..+|++.|.+..+|.. +..-.++-+|+|+++. +..||... +-++ +.|-.|++++|. ++.+|
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~-IetIPn~l----finL----tDLLfLDLS~Nr-Le~LP 166 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNN-IETIPNSL----FINL----TDLLFLDLSNNR-LEMLP 166 (1255)
T ss_pred hhcccccceeeecchhhhhhcchh-hhhhcCcEEEEcccCc-cccCCchH----HHhh----HhHhhhccccch-hhhcC
Confidence 778888888888888888888776 3677888888888874 88888753 5566 777888888875 58888
Q ss_pred ccccCCCCccEEeccCCCCCccC--CCCCCCCCCcEEeccccc-cccccchhhhcccCCCccEEeEecCCCCcccccccC
Q 048062 267 QSSLSLSSLREIEIYKCSSLVSF--PEVALPSKLKKIQIRECD-ALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQL 343 (686)
Q Consensus 267 ~~~~~l~~L~~L~l~~~~~l~~l--p~~~~l~~L~~L~l~~~~-~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 343 (686)
+.+..+.+|++|+|++|+ +..+ -.+-.+++|+.|.+++.. .+..+|..+. .+.+|..++++.
T Consensus 167 PQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld--~l~NL~dvDlS~------------ 231 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD--DLHNLRDVDLSE------------ 231 (1255)
T ss_pred HHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchh--hhhhhhhccccc------------
Confidence 888888888888888876 2221 112235556666665532 2334454444 355555555544
Q ss_pred CCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecC
Q 048062 344 PPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGG 423 (686)
Q Consensus 344 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 423 (686)
+++..+| ..+. ..++|..|++++ +.++. +.. . .+.. .+|++|+++.
T Consensus 232 ------------N~Lp~vP--ecly-------~l~~LrrLNLS~-N~ite-L~~-----~-----~~~W-~~lEtLNlSr 277 (1255)
T KOG0444|consen 232 ------------NNLPIVP--ECLY-------KLRNLRRLNLSG-NKITE-LNM-----T-----EGEW-ENLETLNLSR 277 (1255)
T ss_pred ------------cCCCcch--HHHh-------hhhhhheeccCc-Cceee-eec-----c-----HHHH-hhhhhhcccc
Confidence 3333333 2222 234456666665 45554 220 0 1111 5788888888
Q ss_pred CCCccchHHhhcCCCCCCeeeecccCCc-ccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccccccccc
Q 048062 424 CSKLESIAERLDNNTSLETIAVSFCRNL-KILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLP 502 (686)
Q Consensus 424 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~ 502 (686)
+.++.+|+.+++++.|+.|.+.+|... +-+|++++.+.+|+.+..++|.++-+|.+...|+.|+.|.+.. +.+-.+|
T Consensus 278 -NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLP 355 (1255)
T KOG0444|consen 278 -NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLP 355 (1255)
T ss_pred -chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeech
Confidence 477788888888888888888776653 5678888888888888888888888888888888888888865 6777788
Q ss_pred ccccCCCCCCeEEecCCCCCCCCCC
Q 048062 503 KGLHNLTSLQQLRIGKGVELPSLEE 527 (686)
Q Consensus 503 ~~l~~l~~L~~L~l~~c~~l~~~~~ 527 (686)
++++-++.|+.|++..+|.+.-.|.
T Consensus 356 eaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 356 EAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhcCCcceeeccCCcCccCCCC
Confidence 8888888888888888887765443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.2e-24 Score=219.63 Aligned_cols=204 Identities=23% Similarity=0.260 Sum_probs=99.2
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeecccCC-cccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRN-LKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
.|++|++++|+....-...+..+.+|++|.+++... +..+|.++..+.+|..++++.|++..+|.....+++|+.|+++
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccC
Confidence 455555555432221122223444555555554322 2345555555555555555555555555555555555555555
Q ss_pred cccccccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCC
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDD 572 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~ 572 (686)
+ +.++.+....+...+|++|+++. ++++.+|.. --++.|+.|.+.+|.---+.+|. +++.+.+|+.+...+ ++
T Consensus 254 ~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS---GIGKL~~Levf~aan-N~ 327 (1255)
T KOG0444|consen 254 G-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS---GIGKLIQLEVFHAAN-NK 327 (1255)
T ss_pred c-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCcc---chhhhhhhHHHHhhc-cc
Confidence 5 34444444444445555555555 345555443 12345555555555411123333 455555555555554 45
Q ss_pred ceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCC
Q 048062 573 VVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFP 634 (686)
Q Consensus 573 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~ 634 (686)
++-+|++. .-+..|+.|.+.. +.|..+|..+.-++-|+.|+++.+|++.--|
T Consensus 328 LElVPEgl---------cRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 328 LELVPEGL---------CRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccCchhh---------hhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 55555544 2344555555544 4555555555555555555555555555433
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=7.4e-24 Score=223.89 Aligned_cols=437 Identities=19% Similarity=0.166 Sum_probs=242.4
Q ss_pred cceeeeccCCcccc--cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhch
Q 048062 121 ALEKLVIEGCEELS--VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILST 198 (686)
Q Consensus 121 ~L~~L~l~~c~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~ 198 (686)
+|++|++++..... ..+..++.|+.|.++.+.....+.......+|+++.+....-.. .|..+..+++|+.++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~-----lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS-----LPASISELKNLQYLD 120 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhc-----CchhHHhhhcccccc
Confidence 38889988876554 55566788999998888777766555555555555332222111 122445555555555
Q ss_pred hhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEE
Q 048062 199 KEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREI 278 (686)
Q Consensus 199 l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L 278 (686)
+++|++...|... ..+..++.+..+++.++..+ +. ..++.+++..+.....++..+..+++ .|
T Consensus 121 lS~N~f~~~Pl~i-~~lt~~~~~~~s~N~~~~~l---------g~-----~~ik~~~l~~n~l~~~~~~~i~~l~~--~l 183 (1081)
T KOG0618|consen 121 LSFNHFGPIPLVI-EVLTAEEELAASNNEKIQRL---------GQ-----TSIKKLDLRLNVLGGSFLIDIYNLTH--QL 183 (1081)
T ss_pred cchhccCCCchhH-HhhhHHHHHhhhcchhhhhh---------cc-----ccchhhhhhhhhcccchhcchhhhhe--ee
Confidence 5555555555442 44455555555554322222 22 12555555555444555555554444 46
Q ss_pred eccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCc
Q 048062 279 EIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNL 358 (686)
Q Consensus 279 ~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l 358 (686)
++++|. +. .-.+..+.+|+.|....+ .+..+.. ..++|+.|+..+|+ ++.......+.+|+++++++ .++
T Consensus 184 dLr~N~-~~-~~dls~~~~l~~l~c~rn-~ls~l~~-----~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~-n~l 253 (1081)
T KOG0618|consen 184 DLRYNE-ME-VLDLSNLANLEVLHCERN-QLSELEI-----SGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISH-NNL 253 (1081)
T ss_pred ecccch-hh-hhhhhhccchhhhhhhhc-ccceEEe-----cCcchheeeeccCc-ceeeccccccccceeeecch-hhh
Confidence 666654 22 222233344444443331 1111110 23445555555554 22333333444555555544 334
Q ss_pred ccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCC
Q 048062 359 RTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNT 438 (686)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~ 438 (686)
..+| ..+.. +++|+.+++.. +.++. .| ..+... .+|+.|.+..| .++.+|.....++
T Consensus 254 ~~lp--~wi~~-------~~nle~l~~n~-N~l~~-lp-----~ri~~~------~~L~~l~~~~n-el~yip~~le~~~ 310 (1081)
T KOG0618|consen 254 SNLP--EWIGA-------CANLEALNANH-NRLVA-LP-----LRISRI------TSLVSLSAAYN-ELEYIPPFLEGLK 310 (1081)
T ss_pred hcch--HHHHh-------cccceEecccc-hhHHh-hH-----HHHhhh------hhHHHHHhhhh-hhhhCCCcccccc
Confidence 4444 22222 33455554444 33332 11 111111 34444444442 3444444444455
Q ss_pred CCCeeeecccCCccccccc-ccCCC-CCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccccccCCCCCCeEE
Q 048062 439 SLETIAVSFCRNLKILPSG-LHNLR-QLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLR 515 (686)
Q Consensus 439 ~L~~L~l~~~~~~~~~~~~-l~~l~-~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~ 515 (686)
+|++|++..|.. ..+|.. +.... +|+.|..+.+.+...|. .....+.|+.|.+.++.........+.++..|+.|+
T Consensus 311 sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLh 389 (1081)
T KOG0618|consen 311 SLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLH 389 (1081)
T ss_pred eeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeee
Confidence 555555554322 222221 11111 24444444444444443 222345788888888554445555789999999999
Q ss_pred ecCCCCCCCCCCCC--CCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCcc
Q 048062 516 IGKGVELPSLEEDG--LPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPA 593 (686)
Q Consensus 516 l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~ 593 (686)
+++ +.+.++|... .+..|++|++++|. ++ .+|. ....++.|++|...+ +.+.++|+.. .++
T Consensus 390 Lsy-NrL~~fpas~~~kle~LeeL~LSGNk-L~-~Lp~---tva~~~~L~tL~ahs-N~l~~fPe~~----------~l~ 452 (1081)
T KOG0618|consen 390 LSY-NRLNSFPASKLRKLEELEELNLSGNK-LT-TLPD---TVANLGRLHTLRAHS-NQLLSFPELA----------QLP 452 (1081)
T ss_pred ecc-cccccCCHHHHhchHHhHHHhcccch-hh-hhhH---HHHhhhhhHHHhhcC-Cceeechhhh----------hcC
Confidence 999 6788888763 46789999999998 77 6776 788899999998888 7899999544 778
Q ss_pred ccceeeccccccccccccccC-CCCCcCEEeecCCCCCC
Q 048062 594 SLTTLWIFNFPNLERLSSSIV-DLQYLTSLYLLECPKLK 631 (686)
Q Consensus 594 ~L~~L~l~~~~~L~~l~~~~~-~l~~L~~L~i~~c~~l~ 631 (686)
.|+++|++. ++|+.+-.... .-++|++|+++++.++.
T Consensus 453 qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 453 QLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred cceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc
Confidence 999999997 78876532111 12899999999987643
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.9e-15 Score=165.88 Aligned_cols=256 Identities=28% Similarity=0.403 Sum_probs=137.8
Q ss_pred CCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEee
Q 048062 273 SSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEI 352 (686)
Q Consensus 273 ~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 352 (686)
..-..|+++++ .++.+|. ...++|+.|++.+ +.++.+|.. .++|++|++++| .++.+|. .+++|+.|++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~-N~Lt~LP~l-----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPD-CLPAHITTLVIPD-NNLTSLPAL-----PPELRTLEVSGN-QLTSLPV--LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCC-CCCcCCc-chhcCCCEEEccC-CcCCCCCCC-----CCCCcEEEecCC-ccCcccC--cccccceeec
Confidence 34567788887 4777776 2235788888887 456666642 456777777665 3555542 3455666655
Q ss_pred ccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHH
Q 048062 353 YLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAE 432 (686)
Q Consensus 353 ~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~ 432 (686)
.++ .+..+| . +|++|+.|++++| .++.+|.
T Consensus 270 s~N-~L~~Lp--~----------------------------------------------lp~~L~~L~Ls~N-~Lt~LP~ 299 (788)
T PRK15387 270 FSN-PLTHLP--A----------------------------------------------LPSGLCKLWIFGN-QLTSLPV 299 (788)
T ss_pred cCC-chhhhh--h----------------------------------------------chhhcCEEECcCC-ccccccc
Confidence 553 233333 1 1234444444443 2333332
Q ss_pred hhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCC
Q 048062 433 RLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQ 512 (686)
Q Consensus 433 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 512 (686)
..++|+.|++++|.. ..+|.. ..+|+.|++++|.+..+|.. ..+|+.|++++ +.++.+|.. .++|+
T Consensus 300 ---~p~~L~~LdLS~N~L-~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~l---p~~L~ 365 (788)
T PRK15387 300 ---LPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSD-NQLASLPTL---PSELY 365 (788)
T ss_pred ---cccccceeECCCCcc-ccCCCC---cccccccccccCcccccccc---ccccceEecCC-CccCCCCCC---Ccccc
Confidence 123455555554422 222221 13455555555555555531 12566666655 345555532 23455
Q ss_pred eEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCc
Q 048062 513 QLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLP 592 (686)
Q Consensus 513 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 592 (686)
.|++++ +.+..+|. .+++|+.|++++|. ++ .+|. ..++|+.|++++ +.+..+|. .+
T Consensus 366 ~L~Ls~-N~L~~LP~--l~~~L~~LdLs~N~-Lt-~LP~------l~s~L~~LdLS~-N~LssIP~------------l~ 421 (788)
T PRK15387 366 KLWAYN-NRLTSLPA--LPSGLKELIVSGNR-LT-SLPV------LPSELKELMVSG-NRLTSLPM------------LP 421 (788)
T ss_pred eehhhc-cccccCcc--cccccceEEecCCc-cc-CCCC------cccCCCEEEccC-CcCCCCCc------------ch
Confidence 555555 33444443 23456666666665 44 2332 124666777776 35666653 34
Q ss_pred cccceeeccccccccccccccCCCCCcCEEeecCCC
Q 048062 593 ASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECP 628 (686)
Q Consensus 593 ~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 628 (686)
.+|+.|++++ +.++.+|..+..+++|+.|++++++
T Consensus 422 ~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 5667777776 5677777766677777777777754
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2.5e-15 Score=164.98 Aligned_cols=254 Identities=26% Similarity=0.287 Sum_probs=127.4
Q ss_pred CccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCC
Q 048062 217 SLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS 296 (686)
Q Consensus 217 ~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~ 296 (686)
+-..|+++++. ++.+|.. ++ ++|+.|++.+|. ++.+|.. .++|++|++++| .++.+|. .++
T Consensus 202 ~~~~LdLs~~~-LtsLP~~-----l~------~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~--lp~ 262 (788)
T PRK15387 202 GNAVLNVGESG-LTTLPDC-----LP------AHITTLVIPDNN-LTSLPAL---PPELRTLEVSGN-QLTSLPV--LPP 262 (788)
T ss_pred CCcEEEcCCCC-CCcCCcc-----hh------cCCCEEEccCCc-CCCCCCC---CCCCcEEEecCC-ccCcccC--ccc
Confidence 34556666553 5555554 21 456666666653 3555532 356666666665 3555553 235
Q ss_pred CCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCccccccccccccccccccc
Q 048062 297 KLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYA 376 (686)
Q Consensus 297 ~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~ 376 (686)
+|+.|+++++ .+..+|.. .++|+.|++++|. ++.+|. .+++|+.|+++++ .+..+| ....
T Consensus 263 sL~~L~Ls~N-~L~~Lp~l-----p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp--~lp~-------- 322 (788)
T PRK15387 263 GLLELSIFSN-PLTHLPAL-----PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLP--ALPS-------- 322 (788)
T ss_pred ccceeeccCC-chhhhhhc-----hhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCC--CCcc--------
Confidence 5666666653 34444431 2345566665543 444442 3455666666553 444444 1111
Q ss_pred CCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccc
Q 048062 377 SSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPS 456 (686)
Q Consensus 377 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~ 456 (686)
+|+.|++++ +.++. +| .+|.+|+.|++++| .++.+|.. ..+|+.|++++|. +..+|.
T Consensus 323 --~L~~L~Ls~-N~L~~-LP--------------~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~ 379 (788)
T PRK15387 323 --ELCKLWAYN-NQLTS-LP--------------TLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNR-LTSLPA 379 (788)
T ss_pred --ccccccccc-Ccccc-cc--------------ccccccceEecCCC-ccCCCCCC---Ccccceehhhccc-cccCcc
Confidence 255555555 34443 22 12345666666663 44444432 2345555555543 223443
Q ss_pred cccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCc
Q 048062 457 GLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLH 535 (686)
Q Consensus 457 ~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~ 535 (686)
. ..+|+.|++++|.+..+|.. .++|+.|++++| .+..+|.. ..+|+.|++++ +.++.+|.. ..+++|+
T Consensus 380 l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~ 448 (788)
T PRK15387 380 L---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSET 448 (788)
T ss_pred c---ccccceEEecCCcccCCCCc---ccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCC
Confidence 2 23566666666666655542 135666666663 45555542 23455566665 335555542 2345666
Q ss_pred eeeccCCc
Q 048062 536 SLEINSNK 543 (686)
Q Consensus 536 ~L~l~~~~ 543 (686)
.|++++|+
T Consensus 449 ~LdLs~N~ 456 (788)
T PRK15387 449 TVNLEGNP 456 (788)
T ss_pred eEECCCCC
Confidence 66666665
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=3.4e-14 Score=157.23 Aligned_cols=220 Identities=24% Similarity=0.386 Sum_probs=115.0
Q ss_pred cCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCC
Q 048062 216 CSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALP 295 (686)
Q Consensus 216 ~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l 295 (686)
.+...|+++++. ++.+|.. + +++|+.|++++|. ++.+|..+. ++|++|++++|. ++.+|. ...
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~-----I------p~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~-~l~ 240 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPAC-----I------PEQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPA-TLP 240 (754)
T ss_pred cCceEEEeCCCC-cCcCCcc-----c------ccCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCCh-hhh
Confidence 456677777764 7777654 2 2567788887774 467776553 577888887764 666664 224
Q ss_pred CCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccc
Q 048062 296 SKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRY 375 (686)
Q Consensus 296 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 375 (686)
.+|+.|++++| .+..+|..+. .+|+.|+++++ .++.+|. ..+++|+.|++++| +++.+| ..+.
T Consensus 241 ~~L~~L~Ls~N-~L~~LP~~l~----s~L~~L~Ls~N-~L~~LP~-~l~~sL~~L~Ls~N-~Lt~LP--~~lp------- 303 (754)
T PRK15370 241 DTIQEMELSIN-RITELPERLP----SALQSLDLFHN-KISCLPE-NLPEELRYLSVYDN-SIRTLP--AHLP------- 303 (754)
T ss_pred ccccEEECcCC-ccCcCChhHh----CCCCEEECcCC-ccCcccc-ccCCCCcEEECCCC-ccccCc--ccch-------
Confidence 56777777774 3556665443 45777777654 3555543 23346666666653 344444 2221
Q ss_pred cCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccc
Q 048062 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILP 455 (686)
Q Consensus 376 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 455 (686)
++|+.|++++ +.++. +| ..+|++|+.|++++| .+..+|..+. ++|+.|++++|.. ..+|
T Consensus 304 --~sL~~L~Ls~-N~Lt~-LP-------------~~l~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP 362 (754)
T PRK15370 304 --SGITHLNVQS-NSLTA-LP-------------ETLPPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSKNQI-TVLP 362 (754)
T ss_pred --hhHHHHHhcC-Ccccc-CC-------------ccccccceeccccCC-ccccCChhhc--CcccEEECCCCCC-CcCC
Confidence 1355555555 33433 22 011245555555554 2333443332 3455555555432 2333
Q ss_pred ccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecc
Q 048062 456 SGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISY 494 (686)
Q Consensus 456 ~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 494 (686)
..+ .++|+.|++++|.+..+|.... .+|+.|++++
T Consensus 363 ~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 363 ETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASR 397 (754)
T ss_pred hhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc
Confidence 322 1345555555554444444321 1444444444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=1.7e-13 Score=151.77 Aligned_cols=182 Identities=22% Similarity=0.387 Sum_probs=90.3
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
++|+.|++++| .+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++|.++.+|.... ++|+.|+++
T Consensus 241 ~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 241 DTIQEMELSIN-RITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQ 312 (754)
T ss_pred ccccEEECcCC-ccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhc
Confidence 34555555553 2334443332 34555555543 2233443332 356666666665555554322 255666665
Q ss_pred cccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCc
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDV 573 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l 573 (686)
+ +.+..+|..+ .++|+.|++++| .++.+|. ..+++|+.|++++|. ++ .+|. .+ .++|+.|++++| .+
T Consensus 313 ~-N~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N~-L~-~LP~---~l--p~~L~~LdLs~N-~L 379 (754)
T PRK15370 313 S-NSLTALPETL--PPGLKTLEAGEN-ALTSLPA-SLPPELQVLDVSKNQ-IT-VLPE---TL--PPTITTLDVSRN-AL 379 (754)
T ss_pred C-CccccCCccc--cccceeccccCC-ccccCCh-hhcCcccEEECCCCC-CC-cCCh---hh--cCCcCEEECCCC-cC
Confidence 5 3444454432 245666666654 2444443 234566666666665 43 3333 12 246666666663 45
Q ss_pred eEcCCCcCCCCCCCCCCCccccceeecccccccccccccc----CCCCCcCEEeecCCC
Q 048062 574 VSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSI----VDLQYLTSLYLLECP 628 (686)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~----~~l~~L~~L~i~~c~ 628 (686)
..+|.. .+.+|+.|++++ +++..+|..+ ..++++..|++.+++
T Consensus 380 t~LP~~-----------l~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 380 TNLPEN-----------LPAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCHh-----------HHHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 555542 234566666666 4556655432 223556666666644
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=2e-14 Score=138.99 Aligned_cols=126 Identities=15% Similarity=0.213 Sum_probs=87.0
Q ss_pred hchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccc-ccCCCC
Q 048062 196 LSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQS-SLSLSS 274 (686)
Q Consensus 196 ~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~-~~~l~~ 274 (686)
.+++..|.|..+|+++|+.+++||+|+|+++. ++.|.+. .|..+ ++|..|-+.++..+..+|.. ++.+..
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~----AF~GL----~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPD----AFKGL----ASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccc-hhhcChH----hhhhh----HhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 45667788888888888888888888888874 7777663 37777 77777777776667777764 567778
Q ss_pred ccEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 275 LREIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 275 L~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
|+.|.+.-|. +..++. +..+++|..|.+.+ +.+..++.... ..+..++.+.+..++
T Consensus 142 lqrLllNan~-i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf-~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 142 LQRLLLNANH-INCIRQDALRDLPSLSLLSLYD-NKIQSICKGTF-QGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhcChhh-hcchhHHHHHHhhhcchhcccc-hhhhhhccccc-cchhccchHhhhcCc
Confidence 8888777764 555543 55577777777777 45555555222 246667777766655
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=9.8e-14 Score=134.33 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=75.4
Q ss_pred CcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCccE
Q 048062 141 PALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKS 220 (686)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~ 220 (686)
+.-..++++.|++..+|+. .|..+++|+.+|++.|.|..+.+..|..+++|..
T Consensus 67 ~~tveirLdqN~I~~iP~~---------------------------aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~ 119 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPG---------------------------AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLS 119 (498)
T ss_pred CcceEEEeccCCcccCChh---------------------------hccchhhhceecccccchhhcChHhhhhhHhhhH
Confidence 3667777777777666655 5666666666667777777777766777777766
Q ss_pred eecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccc-cccccCCCCccEEeccCCCCCccCCC--CCCCCC
Q 048062 221 LEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSFPE--VALPSK 297 (686)
Q Consensus 221 L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~l~~ 297 (686)
|.+-++.+++++|... +..| ..|+.|.+.-|.. ..+ ...+..+++|..|.+.++. +..++. +..+..
T Consensus 120 Lvlyg~NkI~~l~k~~----F~gL----~slqrLllNan~i-~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 120 LVLYGNNKITDLPKGA----FGGL----SSLQRLLLNANHI-NCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAA 189 (498)
T ss_pred HHhhcCCchhhhhhhH----hhhH----HHHHHHhcChhhh-cchhHHHHHHhhhcchhcccchh-hhhhccccccchhc
Confidence 6666655577766643 5555 5566666555543 322 2234456666666666653 444443 333455
Q ss_pred CcEEeccc
Q 048062 298 LKKIQIRE 305 (686)
Q Consensus 298 L~~L~l~~ 305 (686)
++.+.+..
T Consensus 190 i~tlhlA~ 197 (498)
T KOG4237|consen 190 IKTLHLAQ 197 (498)
T ss_pred cchHhhhc
Confidence 55555443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=2.5e-14 Score=122.37 Aligned_cols=206 Identities=21% Similarity=0.309 Sum_probs=109.9
Q ss_pred hcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCe
Q 048062 434 LDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQ 513 (686)
Q Consensus 434 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 513 (686)
+-.+.+++.|.+++| .+..+|..+..+.+|+.|.+++|+++.+|.....+++|+.|.+.- +.+..+|.+|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhh
Confidence 345566677777764 344556667777777777777777777777777777777777764 566677777777777777
Q ss_pred EEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCcc
Q 048062 514 LRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPA 593 (686)
Q Consensus 514 L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~ 593 (686)
|++.+++.-+. .+|. .+..++.|+.|.+++ +.++.+|...+ .++
T Consensus 107 ldltynnl~e~-----------------------~lpg---nff~m~tlralyl~d-ndfe~lp~dvg---------~lt 150 (264)
T KOG0617|consen 107 LDLTYNNLNEN-----------------------SLPG---NFFYMTTLRALYLGD-NDFEILPPDVG---------KLT 150 (264)
T ss_pred hhccccccccc-----------------------cCCc---chhHHHHHHHHHhcC-CCcccCChhhh---------hhc
Confidence 77776542221 1121 233334444444444 34444444443 444
Q ss_pred ccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCC----CCcCccceeeecCChh---HHHHhhcCCCCCcc
Q 048062 594 SLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEK----GLPSSLLLLIIWECPL---IVEKCRKDGGQYWD 666 (686)
Q Consensus 594 ~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~----~~~~~L~~L~i~~c~~---l~~~~~~~~~~~~~ 666 (686)
+||.|.+++ +.+-++|..++.+..|++|.|.+ +.++.+|.. .+..+=+.+.+..+|. ..+.+...-.--|.
T Consensus 151 ~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~ 228 (264)
T KOG0617|consen 151 NLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVID 228 (264)
T ss_pred ceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHH
Confidence 555555555 44555555555555555555555 344444431 0111222333444432 23333321111355
Q ss_pred ccCCcceEEecce
Q 048062 667 LLTHIPRVEIDGK 679 (686)
Q Consensus 667 ~i~~i~~~~~~~~ 679 (686)
.|..-.+.+|+|.
T Consensus 229 yirtetYky~ygR 241 (264)
T KOG0617|consen 229 YIRTETYKYIYGR 241 (264)
T ss_pred HHhhhhhhhhhcc
Confidence 5555555666665
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=1.6e-12 Score=146.45 Aligned_cols=121 Identities=22% Similarity=0.280 Sum_probs=72.7
Q ss_pred hhhhhhhhcccchhhhcCcCccEeecccccc-cccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCcc
Q 048062 198 TKEQTYIWKSHDGLLQDICSLKSLEIRSCPK-LQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLR 276 (686)
Q Consensus 198 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~-l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 276 (686)
.+-+|.+..++.. ...++|++|-+.++.. +..++. ..+..+ +.|+.||+++|..+.++|..++.+-+||
T Consensus 529 s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~----~ff~~m----~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 529 SLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISG----EFFRSL----PLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred EEeccchhhccCC--CCCCccceEEEeecchhhhhcCH----HHHhhC----cceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3334444444333 2445677777766542 444433 235556 7777777777777777777777777777
Q ss_pred EEeccCCCCCccCCC-CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEec
Q 048062 277 EIEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWD 331 (686)
Q Consensus 277 ~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~ 331 (686)
+|+++++. +..+|. ++.+..|.+|++.....+..++.... .+++|++|.+..
T Consensus 599 yL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~--~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL--ELQSLRVLRLPR 651 (889)
T ss_pred cccccCCC-ccccchHHHHHHhhheeccccccccccccchhh--hcccccEEEeec
Confidence 77777753 666665 66666777777766555555543333 366666666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=1.9e-13 Score=117.01 Aligned_cols=156 Identities=23% Similarity=0.382 Sum_probs=118.7
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
..++.|.+++ +++..+|..+..+.+|+.|++++ +.++.+|..+..+++|+.|.+.-|.+..+|.+++.+|.|+.|++.
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 5788999999 57888888999999999999997 567788999999999999999999999999999999999999999
Q ss_pred ccccc-ccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCC
Q 048062 494 YCKRL-QVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCD 571 (686)
Q Consensus 494 ~~~~l-~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~ 571 (686)
.++.- .++|..|..++.|+-|+++++ ..+.+|.. +-+++|+.|.+.+|.-+ .+|. .++.++.|++|+|.+ +
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll--~lpk---eig~lt~lrelhiqg-n 183 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLL--SLPK---EIGDLTRLRELHIQG-N 183 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchh--hCcH---HHHHHHHHHHHhccc-c
Confidence 85432 368888888888888888884 44444433 45556666666666533 3343 455566666666665 4
Q ss_pred CceEcCC
Q 048062 572 DVVSFPL 578 (686)
Q Consensus 572 ~l~~~~~ 578 (686)
.++.+|.
T Consensus 184 rl~vlpp 190 (264)
T KOG0617|consen 184 RLTVLPP 190 (264)
T ss_pred eeeecCh
Confidence 5555554
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=6.9e-12 Score=141.27 Aligned_cols=93 Identities=20% Similarity=0.331 Sum_probs=81.3
Q ss_pred hhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCC
Q 048062 204 IWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKC 283 (686)
Q Consensus 204 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~ 283 (686)
+..++..+|..+|.|++|++++|..+.++|.. ++.+ -+|++|+++++. +..+|.+++++..|.+|++..+
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-----I~~L----i~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-----IGEL----VHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChH-----Hhhh----hhhhcccccCCC-ccccchHHHHHHhhheeccccc
Confidence 34556667889999999999999999999988 8999 999999999975 5899999999999999999998
Q ss_pred CCCccCCCCCC-CCCCcEEecccc
Q 048062 284 SSLVSFPEVAL-PSKLKKIQIREC 306 (686)
Q Consensus 284 ~~l~~lp~~~~-l~~L~~L~l~~~ 306 (686)
..+..+|.+.. +++|++|.+..-
T Consensus 629 ~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 629 GRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccchhhhcccccEEEeecc
Confidence 87777777554 999999999773
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=2.5e-11 Score=124.73 Aligned_cols=280 Identities=17% Similarity=0.108 Sum_probs=131.8
Q ss_pred hhhhhhhh-cccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCC------cccccccc
Q 048062 198 TKEQTYIW-KSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGL------VKLPQSSL 270 (686)
Q Consensus 198 ~l~~n~~~-~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l------~~~p~~~~ 270 (686)
++..+.+. ..+...+..+.+|++|++++|. ++.-... .+.......++|++|+++++... ..++..+.
T Consensus 4 ~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~----~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 4 SLKGELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAK----ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccCcccccchHHHHHHHhhccEEeecCCC-CcHHHHH----HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 33334443 3334455667778888888875 4331111 12222222267888888876532 11233455
Q ss_pred CCCCccEEeccCCCCCccCCC-CCCC---CCCcEEecccccccc----ccchhhhcccC-CCccEEeEecCCCCcccccc
Q 048062 271 SLSSLREIEIYKCSSLVSFPE-VALP---SKLKKIQIRECDALK----SLPQAWMCDNN-SSLEILKIWDCHSLTYIAGV 341 (686)
Q Consensus 271 ~l~~L~~L~l~~~~~l~~lp~-~~~l---~~L~~L~l~~~~~l~----~l~~~~~~~~l-~~L~~L~l~~~~~l~~~~~~ 341 (686)
.+++|+.|++++|......+. +..+ ++|++|++++|..-. .+...+. .+ ++|++|++++|. ++.-..
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~--~~~~~L~~L~L~~n~-l~~~~~- 154 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK--DLPPALEKLVLGRNR-LEGASC- 154 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH--hCCCCceEEEcCCCc-CCchHH-
Confidence 677788888877753222221 2222 336666666653211 0111111 23 455555555544 211000
Q ss_pred cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEe
Q 048062 342 QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRV 421 (686)
Q Consensus 342 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l 421 (686)
..+. ..+. .+++|++|++++| .++. .....++..+ ... ++|++|++
T Consensus 155 -----------------~~~~--~~~~-------~~~~L~~L~l~~n-~l~~-~~~~~l~~~l-----~~~-~~L~~L~L 200 (319)
T cd00116 155 -----------------EALA--KALR-------ANRDLKELNLANN-GIGD-AGIRALAEGL-----KAN-CNLEVLDL 200 (319)
T ss_pred -----------------HHHH--HHHH-------hCCCcCEEECcCC-CCch-HHHHHHHHHH-----HhC-CCCCEEec
Confidence 0000 0010 1223555555553 2221 0000111111 111 46777777
Q ss_pred cCCCCc----cchHHhhcCCCCCCeeeecccCCccccccccc-----CCCCCcEEEecCceee-----ecCCCCCCCCCc
Q 048062 422 GGCSKL----ESIAERLDNNTSLETIAVSFCRNLKILPSGLH-----NLRQLQEIGIWECDLV-----SFPQGGLPCAKL 487 (686)
Q Consensus 422 ~~~~~~----~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~l~-----~l~~~~~~~~~L 487 (686)
++|... ..+...+..+++|++|++++|.........+. ..+.|+.|++++|.++ .+......+++|
T Consensus 201 ~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L 280 (319)
T cd00116 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL 280 (319)
T ss_pred cCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCc
Confidence 776432 22344456677777777777654331111111 2367788888777553 222222233578
Q ss_pred cEEeecccccccc----ccccccCC-CCCCeEEecCCC
Q 048062 488 MRLEISYCKRLQV----LPKGLHNL-TSLQQLRIGKGV 520 (686)
Q Consensus 488 ~~L~l~~~~~l~~----l~~~l~~l-~~L~~L~l~~c~ 520 (686)
+.+++++|..-.. +...+... +.|+++++.+++
T Consensus 281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 8888877543321 22344444 677777777643
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.09 E-value=6.9e-12 Score=122.79 Aligned_cols=255 Identities=20% Similarity=0.264 Sum_probs=115.7
Q ss_pred cCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcc--ccccccCCCCccEEeccCCCCCcc--C
Q 048062 214 DICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVK--LPQSSLSLSSLREIEIYKCSSLVS--F 289 (686)
Q Consensus 214 ~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~--~p~~~~~l~~L~~L~l~~~~~l~~--l 289 (686)
.+++|+.|++..|..+++ ..+.++.+.|++|++|+++.|+.+.. +-.-...+..++.+..++|..+.. +
T Consensus 188 ~C~~l~~l~L~~c~~iT~-------~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l 260 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITD-------VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL 260 (483)
T ss_pred hcchhhhhhhcccchhHH-------HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH
Confidence 455555555555555554 22334445555555555555544322 111222444455554444432211 0
Q ss_pred CC-CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc---cCCCcccEEeeccccCcccccccc
Q 048062 290 PE-VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV---QLPPSLKRLEIYLCYNLRTLTVEE 365 (686)
Q Consensus 290 p~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~l~~l~~~~ 365 (686)
-. -+....+.++++..|..+++..-......+..|+.+..++|..+++.... ...++|+.+.++.|..++... .
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--f 338 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--F 338 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--h
Confidence 00 11233344444445544444433222223455555555555554443322 334556666666555544322 0
Q ss_pred cccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccch-----HHhhcCCCCC
Q 048062 366 GIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESI-----AERLDNNTSL 440 (686)
Q Consensus 366 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l-----~~~l~~l~~L 440 (686)
... ...+++|+.+++.+|..+++ ..+..+ ..-.+.|+.+.++.|..++.. ...-..+..|
T Consensus 339 t~l-----~rn~~~Le~l~~e~~~~~~d--------~tL~sl--s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 339 TML-----GRNCPHLERLDLEECGLITD--------GTLASL--SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred hhh-----hcCChhhhhhcccccceehh--------hhHhhh--ccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 000 01123466666666544433 111111 111156666666666544432 2223455667
Q ss_pred CeeeecccCCcccc-cccccCCCCCcEEEecCc-eee--ecCCCCCCCCCccEEee
Q 048062 441 ETIAVSFCRNLKIL-PSGLHNLRQLQEIGIWEC-DLV--SFPQGGLPCAKLMRLEI 492 (686)
Q Consensus 441 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~-~l~--~l~~~~~~~~~L~~L~l 492 (686)
+.+.+++|+.+.+- -+.+..+++|+.+++.+| .+. .+......+|+++...+
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 77777777666432 244555667777776666 222 22223334445554444
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.07 E-value=1.3e-11 Score=120.84 Aligned_cols=280 Identities=18% Similarity=0.288 Sum_probs=142.6
Q ss_pred CccEEEccCCCCCccc--cccccCCCCccEEeccCCCCCccCCC---CCCCCCCcEEeccccccccccchhhhcccCCCc
Q 048062 250 RLEYLALSGCEGLVKL--PQSSLSLSSLREIEIYKCSSLVSFPE---VALPSKLKKIQIRECDALKSLPQAWMCDNNSSL 324 (686)
Q Consensus 250 ~L~~L~l~~~~~l~~~--p~~~~~l~~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 324 (686)
.|+.|.++||.....- -.....+++++.|.+.+|.++++..- -..+++|++|++..|..++...-......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4667777776543221 11233566666667766665554221 233666666666666666554443333456666
Q ss_pred cEEeEecCCCCcccccc---cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCch
Q 048062 325 EILKIWDCHSLTYIAGV---QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELP 401 (686)
Q Consensus 325 ~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 401 (686)
++|++++|+.+..-... .....++.+...+|..+ +.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~---------------------------------~l-------- 257 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL---------------------------------EL-------- 257 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc---------------------------------cH--------
Confidence 66666666655441111 11222333333333322 21
Q ss_pred hhhhhhhccCCCCCCceEEecCCCCccch--HHhhcCCCCCCeeeecccCCccccc-ccc-cCCCCCcEEEecCc-eee-
Q 048062 402 ATLESLEVGNLPPSLKSLRVGGCSKLESI--AERLDNNTSLETIAVSFCRNLKILP-SGL-HNLRQLQEIGIWEC-DLV- 475 (686)
Q Consensus 402 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~l--~~~l~~l~~L~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~~-~l~- 475 (686)
+.+... ....+-+.++++..|..++.. ...-..+..|+.|+.++|..+...+ ..+ .+.++|+.|.+++| .++
T Consensus 258 e~l~~~--~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 258 EALLKA--AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred HHHHHH--hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh
Confidence 111111 000022334444444433322 1122344555555555555543322 111 23466666666666 333
Q ss_pred -ecCCCCCCCCCccEEeecccccccc--ccccccCCCCCCeEEecCCCCCCCCCCC------CCCCCCceeeccCCcchh
Q 048062 476 -SFPQGGLPCAKLMRLEISYCKRLQV--LPKGLHNLTSLQQLRIGKGVELPSLEED------GLPTNLHSLEINSNKEIW 546 (686)
Q Consensus 476 -~l~~~~~~~~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~~~~l~ 546 (686)
.+.....+++.|+.+++.+|..... +-..-.+++.|+.|.+++|..+++.... .....|+.+.+++|+.++
T Consensus 336 ~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 336 RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 2333444556777777777654432 2222346777777777777666554211 124577788888888776
Q ss_pred hhhhhcccccCCCCCccEEEeccCCCceE
Q 048062 547 KSMIERGRGFHRFSSLRQLTIINCDDVVS 575 (686)
Q Consensus 547 ~~~~~~~~~l~~l~~L~~L~i~~c~~l~~ 575 (686)
+...+ .+..+++|+.+++.+|..+..
T Consensus 416 d~~Le---~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 416 DATLE---HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HHHHH---HHhhCcccceeeeechhhhhh
Confidence 55555 677777888877777765543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=1.1e-10 Score=120.13 Aligned_cols=259 Identities=21% Similarity=0.181 Sum_probs=150.2
Q ss_pred HHHhhhcCCCccEEEccCCCCC----ccccccccCCCCccEEeccCCCCCccCC--------CCCCCCCCcEEecccccc
Q 048062 241 QQQLCELSCRLEYLALSGCEGL----VKLPQSSLSLSSLREIEIYKCSSLVSFP--------EVALPSKLKKIQIRECDA 308 (686)
Q Consensus 241 l~~l~~~~~~L~~L~l~~~~~l----~~~p~~~~~l~~L~~L~l~~~~~l~~lp--------~~~~l~~L~~L~l~~~~~ 308 (686)
++.+ .+|+.|++++|... ..++..+...++|++|+++++. +...+ .+..+++|+.|++++|..
T Consensus 19 ~~~l----~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 19 LPKL----LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHH----hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 5566 78999999998632 2355566677889999888864 22111 133355666666666543
Q ss_pred ccccchhhhcccC---CCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccccC-CCccEEe
Q 048062 309 LKSLPQAWMCDNN---SSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYAS-SLLEELE 384 (686)
Q Consensus 309 l~~l~~~~~~~~l---~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~-~~L~~L~ 384 (686)
....+..+. .+ ++|++|++++|. +..... ..+. ..+. .. ++|+.|+
T Consensus 94 ~~~~~~~~~--~l~~~~~L~~L~ls~~~-~~~~~~------------------~~l~--~~l~-------~~~~~L~~L~ 143 (319)
T cd00116 94 GPDGCGVLE--SLLRSSSLQELKLNNNG-LGDRGL------------------RLLA--KGLK-------DLPPALEKLV 143 (319)
T ss_pred ChhHHHHHH--HHhccCcccEEEeeCCc-cchHHH------------------HHHH--HHHH-------hCCCCceEEE
Confidence 222222221 11 225555555543 111000 0000 0111 12 3578888
Q ss_pred ccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCcc----chHHhhcCCCCCCeeeecccCCcc----cccc
Q 048062 385 ISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLE----SIAERLDNNTSLETIAVSFCRNLK----ILPS 456 (686)
Q Consensus 385 l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~L~l~~~~~~~----~~~~ 456 (686)
+++|. ++. -....++..+.. . ++|++|++++|.... .++..+..+++|++|++++|.... .+..
T Consensus 144 L~~n~-l~~-~~~~~~~~~~~~-----~-~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 144 LGRNR-LEG-ASCEALAKALRA-----N-RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred cCCCc-CCc-hHHHHHHHHHHh-----C-CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 88753 332 111112222221 2 579999999975442 345556677899999999986542 2344
Q ss_pred cccCCCCCcEEEecCceeee--c---CCC-CCCCCCccEEeecccccc----ccccccccCCCCCCeEEecCCCCCCCCC
Q 048062 457 GLHNLRQLQEIGIWECDLVS--F---PQG-GLPCAKLMRLEISYCKRL----QVLPKGLHNLTSLQQLRIGKGVELPSLE 526 (686)
Q Consensus 457 ~l~~l~~L~~L~l~~~~l~~--l---~~~-~~~~~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~c~~l~~~~ 526 (686)
.+..+++|+.|++++|.+.. + ... ....+.|+.|++.+|... ..+...+..+++|+++++++|. +...+
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~ 294 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEG 294 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHH
Confidence 56678999999999996653 1 111 112369999999997532 2344466777999999999965 33221
Q ss_pred CC------CCC-CCCceeeccCCc
Q 048062 527 ED------GLP-TNLHSLEINSNK 543 (686)
Q Consensus 527 ~~------~~~-~~L~~L~l~~~~ 543 (686)
.. ..+ +.|++++|.+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCCCC
Confidence 11 123 688999988775
No 27
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.82 E-value=1.8e-08 Score=101.92 Aligned_cols=70 Identities=31% Similarity=0.555 Sum_probs=33.1
Q ss_pred CCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccC
Q 048062 462 RQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINS 541 (686)
Q Consensus 462 ~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~ 541 (686)
.+++.|++++|.+..+|. . .++|+.|.+.+|..++.+|..+ .++|++|.+++|..+..+ +.+|+.|++.+
T Consensus 52 ~~l~~L~Is~c~L~sLP~--L-P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~ 121 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--L-PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKG 121 (426)
T ss_pred cCCCEEEeCCCCCcccCC--C-CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCC
Confidence 444444444444444441 1 1245555555555555555433 235555555555444332 23455555543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5e-09 Score=103.64 Aligned_cols=200 Identities=18% Similarity=0.174 Sum_probs=125.4
Q ss_pred hcccceeeeccCCcccc----cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhh
Q 048062 118 HLLALEKLVIEGCEELS----VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEE 193 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~ 193 (686)
.+.+|+++.+.+|+--. .-...+|+++.|+++++-.-.|..... ....+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~-------------------------i~eqLp~ 173 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLK-------------------------IAEQLPS 173 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHH-------------------------HHHhccc
Confidence 47888888888876443 134568888999888865444322211 1233444
Q ss_pred hhhchhhhhhhhcccchh-hhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCC
Q 048062 194 LILSTKEQTYIWKSHDGL-LQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSL 272 (686)
Q Consensus 194 L~~l~l~~n~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l 272 (686)
|+.|+++.|++....... -..+++|+.|.|+.|. +.. ..+..+...||+|+.|.+.+|..+.........+
T Consensus 174 Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~-------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 174 LENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSW-------KDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred chhcccccccccCCccccchhhhhhhheEEeccCC-CCH-------HHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 555566666665544322 3468899999999996 652 3467777788999999999985433333334566
Q ss_pred CCccEEeccCCCCCccCC---CCCCCCCCcEEeccccccccccch--h-hh--cccCCCccEEeEecCCCCccccc---c
Q 048062 273 SSLREIEIYKCSSLVSFP---EVALPSKLKKIQIRECDALKSLPQ--A-WM--CDNNSSLEILKIWDCHSLTYIAG---V 341 (686)
Q Consensus 273 ~~L~~L~l~~~~~l~~lp---~~~~l~~L~~L~l~~~~~l~~l~~--~-~~--~~~l~~L~~L~l~~~~~l~~~~~---~ 341 (686)
..|++|+|++|.. .+++ ..+.++.|..|.++.+ .+.++.. . .. .+.+++|++|++..++ +.+|+. .
T Consensus 246 ~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l 322 (505)
T KOG3207|consen 246 QTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHL 322 (505)
T ss_pred hHHhhccccCCcc-cccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchh
Confidence 7899999999864 4444 4777888888888875 3433321 1 00 1246788888887765 433332 2
Q ss_pred cCCCcccEEeec
Q 048062 342 QLPPSLKRLEIY 353 (686)
Q Consensus 342 ~~~~~L~~L~l~ 353 (686)
..+++|+.|.+.
T Consensus 323 ~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 323 RTLENLKHLRIT 334 (505)
T ss_pred hccchhhhhhcc
Confidence 445555555543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.64 E-value=1.1e-09 Score=111.68 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=112.3
Q ss_pred ceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccc
Q 048062 417 KSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCK 496 (686)
Q Consensus 417 ~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 496 (686)
...+++. +.+..+|..+..+-.|+.+.+..|. +..+|..+.++..|..++++.|.++.+|...+.+ -|+.|-+++ +
T Consensus 78 ~~aDlsr-NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sN-N 153 (722)
T KOG0532|consen 78 VFADLSR-NRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSN-N 153 (722)
T ss_pred hhhhccc-cccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEec-C
Confidence 3456666 3566788888888888888887743 4567788888899999999999999898888777 788888888 7
Q ss_pred ccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEc
Q 048062 497 RLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSF 576 (686)
Q Consensus 497 ~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~ 576 (686)
+++.+|+.++....|..|+.+.|...+-.+..+.+.+|+.|.+..|. +. .+|+ .+..+ .|..|+++. +++..+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~-~lp~---El~~L-pLi~lDfSc-Nkis~i 226 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LE-DLPE---ELCSL-PLIRLDFSC-NKISYL 226 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hh-hCCH---HHhCC-ceeeeeccc-Cceeec
Confidence 88889888887788888888775433323333445566666666665 32 2333 22222 344555553 455555
Q ss_pred CCCcCCCCCCCCCCCccccceeeccccccccccc
Q 048062 577 PLKADDKGSGTTLPLPASLTTLWIFNFPNLERLS 610 (686)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 610 (686)
|..+ ..+..|++|.+.+ +=|++=|
T Consensus 227 Pv~f---------r~m~~Lq~l~Len-NPLqSPP 250 (722)
T KOG0532|consen 227 PVDF---------RKMRHLQVLQLEN-NPLQSPP 250 (722)
T ss_pred chhh---------hhhhhheeeeecc-CCCCCCh
Confidence 5544 2444555555554 3344433
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1.5e-08 Score=95.23 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=105.1
Q ss_pred CccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccc
Q 048062 187 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP 266 (686)
Q Consensus 187 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p 266 (686)
.+..-+.|..+|+++|.+..+..+ ..-.|.++.|+++++. +..+ +.+..+ ++|++|++++|. +.++-
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~-i~~v------~nLa~L----~~L~~LDLS~N~-Ls~~~ 345 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNR-IRTV------QNLAEL----PQLQLLDLSGNL-LAECV 345 (490)
T ss_pred ecchHhhhhhccccccchhhhhhh-hhhccceeEEeccccc-eeee------hhhhhc----ccceEeecccch-hHhhh
Confidence 444556788999999999988776 4778999999999986 6665 336667 999999999985 47776
Q ss_pred ccccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 267 QSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 267 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
.|-..+.+.++|.++.|. +.++..++.+-+|..|++++ +.++.+...-...++|.|+++.+.+++
T Consensus 346 Gwh~KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhhcCEeeeehhhhh-HhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 677788899999999984 88888889999999999998 456666554333478888888888876
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-08 Score=100.29 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc----cCCCcccEEeecc
Q 048062 295 PSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV----QLPPSLKRLEIYL 354 (686)
Q Consensus 295 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~ 354 (686)
+.+|+.+.+.++ .+...+..-....+++++.|+++.+- +..|... ..+|+|+.|+++.
T Consensus 120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~ 181 (505)
T KOG3207|consen 120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSS 181 (505)
T ss_pred HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccccc
Confidence 566777777664 34444432222356777777777642 3333222 4456666666665
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=5.9e-07 Score=91.21 Aligned_cols=38 Identities=34% Similarity=0.508 Sum_probs=19.3
Q ss_pred CCccEEeEecCCCCcccccccCCCcccEEeeccccCccccc
Q 048062 322 SSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLT 362 (686)
Q Consensus 322 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~ 362 (686)
.+++.|++++| .++.+| ..+++|++|.+++|.+++.+|
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLP 89 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCC
Confidence 44555555555 344444 344455555555555555544
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=4.2e-08 Score=92.31 Aligned_cols=124 Identities=22% Similarity=0.290 Sum_probs=85.6
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
..|+++++++ +.++++.+.+.-.|.++.|++++|..... ..+..+++|+.|++++|.+..+..+...+.|++.|.++
T Consensus 284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccc-cchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 5688888888 46777777777788888888888766544 44777888888888888777776666666788888888
Q ss_pred cccccccccccccCCCCCCeEEecCCCCCCC---CCCCCCCCCCceeeccCCc
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGKGVELPS---LEEDGLPTNLHSLEINSNK 543 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~---~~~~~~~~~L~~L~l~~~~ 543 (686)
+ +.++.+. +++.+-+|..|++++++ +.. ....+.+|-|+.+.+.+|+
T Consensus 361 ~-N~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 Q-NKIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred h-hhHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence 7 5666653 57777777777777743 322 2223444555555555555
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=1.1e-07 Score=86.09 Aligned_cols=106 Identities=21% Similarity=0.278 Sum_probs=37.2
Q ss_pred CCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccc-cCCCCCCeEEecCCCCCCCCCCC---CCCCCCce
Q 048062 461 LRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGL-HNLTSLQQLRIGKGVELPSLEED---GLPTNLHS 536 (686)
Q Consensus 461 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~ 536 (686)
+.+|+.|++++|.++.++. ...++.|+.|++++ +.++.+.+++ ..+++|++|++++ +++.++... ..+++|++
T Consensus 41 l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcce
Confidence 4556666666665555542 22344666666665 4555554433 2466666666665 334333322 23566777
Q ss_pred eeccCCcchhhhhhhcccccCCCCCccEEEeccC
Q 048062 537 LEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 537 L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
|++.+|+ +...-.++...+..+|+|+.|+-...
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 7777766 32121112235666788887776553
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.6e-09 Score=98.06 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=93.2
Q ss_pred CccEEEccCCCCC-ccccccccCCCCccEEeccCCCCCccCC-CCCCCCCCcEEeccccccccccchhhhcccCCCccEE
Q 048062 250 RLEYLALSGCEGL-VKLPQSSLSLSSLREIEIYKCSSLVSFP-EVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEIL 327 (686)
Q Consensus 250 ~L~~L~l~~~~~l-~~~p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 327 (686)
.|++||+++.... ..+...+..|.+|+.|.+.+...-..+- .++.-.+|+.|+++.|++++.........+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666653211 1222234455666666666653111111 1445566677777777666665555554566777777
Q ss_pred eEecCCCCcccccc---cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhh
Q 048062 328 KIWDCHSLTYIAGV---QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATL 404 (686)
Q Consensus 328 ~l~~~~~l~~~~~~---~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 404 (686)
++++|...+..... ..-++|+.|++++|...-.. +.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~----------------------------------------sh~ 305 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK----------------------------------------SHL 305 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh----------------------------------------hHH
Confidence 77777644433111 23345555555554321110 011
Q ss_pred hhhhccCCCCCCceEEecCCCCccc-hHHhhcCCCCCCeeeecccCCcc-cccccccCCCCCcEEEecCc
Q 048062 405 ESLEVGNLPPSLKSLRVGGCSKLES-IAERLDNNTSLETIAVSFCRNLK-ILPSGLHNLRQLQEIGIWEC 472 (686)
Q Consensus 405 ~~l~~~~~~~~L~~L~l~~~~~~~~-l~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 472 (686)
..+ .... |+|.+|++++|..++. ....+.+++.|++|.++.|..+. ...-.+...|+|.+|++.+|
T Consensus 306 ~tL-~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 306 STL-VRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHH-HHhC-CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 111 1112 5666667766665542 23445667777777777776542 11123455677777777776
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.3e-08 Score=91.66 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCccEEEccCCCCCccccc--cccCCCCccEEeccCCC
Q 048062 249 CRLEYLALSGCEGLVKLPQ--SSLSLSSLREIEIYKCS 284 (686)
Q Consensus 249 ~~L~~L~l~~~~~l~~~p~--~~~~l~~L~~L~l~~~~ 284 (686)
.+|+.|++++|.++++... -+.+|+.|..|+++.|.
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 4555555555554433222 23355555555555554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=3.4e-07 Score=82.77 Aligned_cols=100 Identities=20% Similarity=0.195 Sum_probs=39.6
Q ss_pred hhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHH-HHhhhcCCCccEEEccCCCCCcccc--cc
Q 048062 192 EELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQ-QQLCELSCRLEYLALSGCEGLVKLP--QS 268 (686)
Q Consensus 192 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l-~~l~~~~~~L~~L~l~~~~~l~~~p--~~ 268 (686)
.+|+.+++++|.+..+.. +..+++|++|++++|. ++++... + ..+ ++|++|.+++|.. ..+. ..
T Consensus 42 ~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~-I~~i~~~-----l~~~l----p~L~~L~L~~N~I-~~l~~l~~ 108 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNR-ISSISEG-----LDKNL----PNLQELYLSNNKI-SDLNELEP 108 (175)
T ss_dssp TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHH-----HHHH-----TT--EEE-TTS----SCCCCGG
T ss_pred cCCCEEECCCCCCccccC--ccChhhhhhcccCCCC-CCccccc-----hHHhC----CcCCEEECcCCcC-CChHHhHH
Confidence 344444566666665543 4567777777777775 7666432 2 234 7778888877653 3332 23
Q ss_pred ccCCCCccEEeccCCCCCccCCC-----CCCCCCCcEEeccc
Q 048062 269 SLSLSSLREIEIYKCSSLVSFPE-----VALPSKLKKIQIRE 305 (686)
Q Consensus 269 ~~~l~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~ 305 (686)
++.+++|+.|++.+|+ +..-+. +..+|+|+.||-..
T Consensus 109 L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 5577788888888877 333332 44578888887654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.28 E-value=8.6e-07 Score=93.88 Aligned_cols=145 Identities=25% Similarity=0.360 Sum_probs=66.2
Q ss_pred CCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccC
Q 048062 463 QLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINS 541 (686)
Q Consensus 463 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~ 541 (686)
+|+.|+++++.+..+|.....+++|+.|++.+ +.+..+|......+.|+.|++++ +.+..+|.. +.+..|++|.+.+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcC
Confidence 45555555555544443334444555555554 34444444333445555555555 344444443 2334455555555
Q ss_pred CcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCE
Q 048062 542 NKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTS 621 (686)
Q Consensus 542 ~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~ 621 (686)
|+.+. .+. .+..+.++..+.+.+ +.+..++... ..++++++|++++ +.+..++. +..+.+|+.
T Consensus 219 N~~~~--~~~---~~~~~~~l~~l~l~~-n~~~~~~~~~---------~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~ 281 (394)
T COG4886 219 NSIIE--LLS---SLSNLKNLSGLELSN-NKLEDLPESI---------GNLSNLETLDLSN-NQISSISS-LGSLTNLRE 281 (394)
T ss_pred Cccee--cch---hhhhcccccccccCC-ceeeeccchh---------ccccccceecccc-cccccccc-ccccCccCE
Confidence 53121 111 234444444444333 3333333222 1444455555555 45555544 455555555
Q ss_pred EeecC
Q 048062 622 LYLLE 626 (686)
Q Consensus 622 L~i~~ 626 (686)
|++.+
T Consensus 282 L~~s~ 286 (394)
T COG4886 282 LDLSG 286 (394)
T ss_pred EeccC
Confidence 55555
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.22 E-value=9.5e-08 Score=97.78 Aligned_cols=192 Identities=20% Similarity=0.199 Sum_probs=146.7
Q ss_pred CCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCcc
Q 048062 140 LPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK 219 (686)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 219 (686)
+.--...+++.+..-.+|..+..|..|+.+.+-.+.... ++..+.++..|++++++.|.+...+... .+--|+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~lp~~l--C~lpLk 146 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSHLPDGL--CDLPLK 146 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhcCChhh--hcCcce
Confidence 334455677777777777777777777777443332222 3448889999999999999999998875 344589
Q ss_pred EeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCC-CCCCCCC
Q 048062 220 SLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALPSKL 298 (686)
Q Consensus 220 ~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~l~~L 298 (686)
.|.++++. ++.+|+. ++.+ +.|..|+.+.|. +..+|..++.+.+|+.|.++.|. +..+|+ +. .-.|
T Consensus 147 vli~sNNk-l~~lp~~-----ig~~----~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~-l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 147 VLIVSNNK-LTSLPEE-----IGLL----PTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELC-SLPL 213 (722)
T ss_pred eEEEecCc-cccCCcc-----cccc----hhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHh-CCce
Confidence 99999874 9999988 6666 899999999986 48899999999999999999986 666775 55 4468
Q ss_pred cEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc----cCCCcccEEeeccc
Q 048062 299 KKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV----QLPPSLKRLEIYLC 355 (686)
Q Consensus 299 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~c 355 (686)
.+|+++. +++..+|-.|. .|..|++|.|.+++ +.+-|.. +...-.|+|++.-|
T Consensus 214 i~lDfSc-Nkis~iPv~fr--~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSC-NKISYLPVDFR--KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccc-Cceeecchhhh--hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 8999987 78999999988 89999999999887 5553332 33444566777666
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.16 E-value=1.9e-06 Score=91.17 Aligned_cols=190 Identities=23% Similarity=0.270 Sum_probs=142.5
Q ss_pred eeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCC-CccEEeeccccccccccccccCCCCCCeEEecCCC
Q 048062 442 TIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCA-KLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 442 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~-~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 520 (686)
.+....+...... ..+..++.++.|.+.++.+..++....... +|+.|++++ +.+..+|..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N- 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN- 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-
Confidence 3555544432222 224445789999999999999999888774 999999999 788888778899999999999995
Q ss_pred CCCCCCCCC-CCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceee
Q 048062 521 ELPSLEEDG-LPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLW 599 (686)
Q Consensus 521 ~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 599 (686)
.+..++... ..++|+.|++++|. +. .++. .......|++|.+++.+ ....+... ....++..|.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~-i~-~l~~---~~~~~~~L~~l~~~~N~-~~~~~~~~---------~~~~~l~~l~ 238 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNK-IS-DLPP---EIELLSALEELDLSNNS-IIELLSSL---------SNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCc-cc-cCch---hhhhhhhhhhhhhcCCc-ceecchhh---------hhcccccccc
Confidence 577777765 78899999999998 55 4544 23355569999999843 44444333 2556777777
Q ss_pred ccccccccccccccCCCCCcCEEeecCCCCCCcCCCCCCcCccceeeecCCh
Q 048062 600 IFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKGLPSSLLLLIIWECP 651 (686)
Q Consensus 600 l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 651 (686)
+.+ +.+..++..+..+++++.|++.+ ..+..++..+-..+++.|++++..
T Consensus 239 l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 239 LSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCcc
Confidence 665 66666667778899999999998 578888875667899999998853
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.05 E-value=1.5e-07 Score=90.95 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=70.4
Q ss_pred ccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCc----cchHHhhcCCCCCCeeeecccCCccc--
Q 048062 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKL----ESIAERLDNNTSLETIAVSFCRNLKI-- 453 (686)
Q Consensus 380 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~----~~l~~~l~~l~~L~~L~l~~~~~~~~-- 453 (686)
|+.+...+ |++.+ .+...+...+... +.|+.+.+..+... +.+...+..+++|+.|++++|.....
T Consensus 159 Lrv~i~~r-Nrlen-~ga~~~A~~~~~~------~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 159 LRVFICGR-NRLEN-GGATALAEAFQSH------PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred eEEEEeec-ccccc-ccHHHHHHHHHhc------cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH
Confidence 55555555 45554 3332333332222 56777777665422 23355667788888888887765532
Q ss_pred --ccccccCCCCCcEEEecCceeee-----c-CCCCCCCCCccEEeecccccccc----ccccccCCCCCCeEEecCC
Q 048062 454 --LPSGLHNLRQLQEIGIWECDLVS-----F-PQGGLPCAKLMRLEISYCKRLQV----LPKGLHNLTSLQQLRIGKG 519 (686)
Q Consensus 454 --~~~~l~~l~~L~~L~l~~~~l~~-----l-~~~~~~~~~L~~L~l~~~~~l~~----l~~~l~~l~~L~~L~l~~c 519 (686)
+...+..+++|+.|++++|.++. + ...-...|+|+.+.+.+|..... +...+...+.|+.|++++|
T Consensus 231 ~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 22345566777777777775441 1 11111245777777776532221 1123344566666666664
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=1.2e-05 Score=59.35 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=33.1
Q ss_pred hhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCC
Q 048062 195 ILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCE 260 (686)
Q Consensus 195 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~ 260 (686)
+.+++++|.+..++...|..+++|++|++++|. ++.+++.. +..+ ++|++|++++|.
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~----f~~l----~~L~~L~l~~N~ 60 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDA----FSNL----PNLRYLDLSNNN 60 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTT----TTTS----TTESEEEETSSS
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHH----HcCC----CCCCEEeCcCCc
Confidence 344444555555555556666666666666553 66665532 5555 666666666653
No 43
>PLN03150 hypothetical protein; Provisional
Probab=97.86 E-value=2.6e-05 Score=86.73 Aligned_cols=106 Identities=20% Similarity=0.260 Sum_probs=60.0
Q ss_pred CCeeeecccCCcccccccccCCCCCcEEEecCceee-ecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecC
Q 048062 440 LETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLV-SFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGK 518 (686)
Q Consensus 440 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 518 (686)
++.|++++|.....+|..+..+++|+.|++++|.+. .+|.....+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455566665555555555666666666666666554 4555555555666666666544445666666666666666666
Q ss_pred CCCCCCCCCC--CCCCCCceeeccCCcch
Q 048062 519 GVELPSLEED--GLPTNLHSLEINSNKEI 545 (686)
Q Consensus 519 c~~l~~~~~~--~~~~~L~~L~l~~~~~l 545 (686)
|.....+|.. ..+.++..+++.+|..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 5544444432 12234556666666533
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.84 E-value=2.9e-06 Score=82.23 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=40.0
Q ss_pred cccchhccccchHhHhhhhccCCCCCcccCCCCcccccchh-------cccceeeeccCCc--ccc-----------ccc
Q 048062 78 DVEDLLDQFQTEAFRRKLVLGNREPAAAHDQPSSSRTRTKH-------LLALEKLVIEGCE--ELS-----------VSI 137 (686)
Q Consensus 78 ~~~dvl~~l~~~~~l~~l~i~~~~~~~~~~~~~~~~~~p~~-------l~~L~~L~l~~c~--~~~-----------~~l 137 (686)
+..+|.+.+.+...+.+++++|+. .+.....+ .++|+..++++-. ... +.+
T Consensus 18 d~~~v~~~~~~~~s~~~l~lsgnt---------~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL 88 (382)
T KOG1909|consen 18 DEKDVEEELEPMDSLTKLDLSGNT---------FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKAL 88 (382)
T ss_pred hhhhHHHHhcccCceEEEeccCCc---------hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHH
Confidence 455677777777778888888873 33333322 3556666666521 110 455
Q ss_pred CCCCcceEEEEcCccc
Q 048062 138 SSLPALCKFIIGGCKK 153 (686)
Q Consensus 138 ~~l~~L~~L~l~~~~~ 153 (686)
-.+|.|++|+++.|-.
T Consensus 89 ~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcCCceeEeecccccc
Confidence 5667788888877543
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.80 E-value=2.2e-05 Score=57.91 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=27.0
Q ss_pred CCCeeeecccCCccccc-ccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccc
Q 048062 439 SLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYC 495 (686)
Q Consensus 439 ~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~ 495 (686)
+|++|++++| .+..+| ..+..+++|++|++++|.+..+++ .+..+++|+.|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444 222222 344555555555555555555544 3344555555555553
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=1.7e-06 Score=91.31 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=113.2
Q ss_pred cccceeeeccCCcccc--ccc--CCCCcceEEEEcCccceeEccccccCCCcceeecccCcc-----hhhccCCCCCCcc
Q 048062 119 LLALEKLVIEGCEELS--VSI--SSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSN-----QVFLAGPLKPQLP 189 (686)
Q Consensus 119 l~~L~~L~l~~c~~~~--~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~-----~~~~~~~~~~~l~ 189 (686)
+++++.|.+-.-+.-. .++ .-+.+||+|.+.||+.-...+...--..|++|.+..... +..-.|.+...+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~ 162 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV 162 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh
Confidence 3555555544333222 123 345688888888888766333222234555553322111 0011111111111
Q ss_pred chhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc-c
Q 048062 190 KLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ-S 268 (686)
Q Consensus 190 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~-~ 268 (686)
-.+|...+.++|.+..+... +.-++.|+.|+|+.|. +++. +.+..+ ++|++|||++|. +..+|. +
T Consensus 163 -Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk-~~~v------~~Lr~l----~~LkhLDlsyN~-L~~vp~l~ 228 (1096)
T KOG1859|consen 163 -WNKLATASFSYNRLVLMDES-LQLLPALESLNLSHNK-FTKV------DNLRRL----PKLKHLDLSYNC-LRHVPQLS 228 (1096)
T ss_pred -hhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhh-hhhh------HHHHhc----ccccccccccch-hccccccc
Confidence 22466677888888776654 4677888888888875 5553 335555 888888888875 466664 2
Q ss_pred ccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 269 SLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 269 ~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
...+. |+.|.+++|. ++.+-.+.++.+|+.|+++++ -+....+....-.+..|..|.+.+++
T Consensus 229 ~~gc~-L~~L~lrnN~-l~tL~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 229 MVGCK-LQLLNLRNNA-LTTLRGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhh-heeeeecccH-HHhhhhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 22444 8888888874 777777788888888888874 33322221111125667777777765
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=1.6e-05 Score=75.31 Aligned_cols=83 Identities=11% Similarity=0.039 Sum_probs=47.4
Q ss_pred cCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCC--ccccccccCCCCccEEeccCCCCCccCCCC-
Q 048062 216 CSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGL--VKLPQSSLSLSSLREIEIYKCSSLVSFPEV- 292 (686)
Q Consensus 216 ~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l--~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~- 292 (686)
.-++.|.+.+|. +.... .+..++..++.++.+++.+|... .++-..+..+|.|+.|+++.|+.-..+..+
T Consensus 45 ra~ellvln~~~-id~~g------d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 45 RALELLVLNGSI-IDNEG------DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred cchhhheecCCC-CCcch------hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 344456666664 44432 24445556688889999887531 233334558888888888887532222111
Q ss_pred CCCCCCcEEeccc
Q 048062 293 ALPSKLKKIQIRE 305 (686)
Q Consensus 293 ~~l~~L~~L~l~~ 305 (686)
....+|+.|-+.+
T Consensus 118 ~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 118 LPLKNLRVLVLNG 130 (418)
T ss_pred ccccceEEEEEcC
Confidence 2345666666655
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.69 E-value=5.4e-06 Score=90.59 Aligned_cols=87 Identities=23% Similarity=0.446 Sum_probs=38.1
Q ss_pred CCCccEEEccCCCCCcc--ccccccCCCCccEEeccCC-CCCccCC-----CCCCCCCCcEEeccccccccccchhhhcc
Q 048062 248 SCRLEYLALSGCEGLVK--LPQSSLSLSSLREIEIYKC-SSLVSFP-----EVALPSKLKKIQIRECDALKSLPQAWMCD 319 (686)
Q Consensus 248 ~~~L~~L~l~~~~~l~~--~p~~~~~l~~L~~L~l~~~-~~l~~lp-----~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 319 (686)
+++|+.|.+.+|..+.. +-.....+++|++|++++| ......+ ....+++|+.|+++++..+....-.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35566666666554443 2233445556666666552 2111111 01123455555555544443333222222
Q ss_pred cCCCccEEeEecCCC
Q 048062 320 NNSSLEILKIWDCHS 334 (686)
Q Consensus 320 ~l~~L~~L~l~~~~~ 334 (686)
.+++|++|.+.+|..
T Consensus 267 ~c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSN 281 (482)
T ss_pred hCCCcceEccCCCCc
Confidence 344555555444443
No 49
>PLN03150 hypothetical protein; Provisional
Probab=97.64 E-value=7.1e-05 Score=83.33 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=88.0
Q ss_pred CccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCC-CCCC
Q 048062 217 SLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-VALP 295 (686)
Q Consensus 217 ~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~~l 295 (686)
.++.|+|+++..-..+|.. +..+ ++|+.|++++|.....+|..++.+++|+.|++++|.....+|. ++.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-----i~~L----~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-----ISKL----RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEEECCCCCccccCCHH-----HhCC----CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 4788999988744456654 7777 9999999999976668898999999999999999975556776 7889
Q ss_pred CCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCccc
Q 048062 296 SKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYI 338 (686)
Q Consensus 296 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~ 338 (686)
++|+.|++++|.....+|..+.. ...++..+++.++..+...
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~-~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGG-RLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCCCEEECcCCcccccCChHHhh-ccccCceEEecCCccccCC
Confidence 99999999998766678877652 2356778888887765543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=1.3e-06 Score=92.15 Aligned_cols=123 Identities=24% Similarity=0.251 Sum_probs=93.1
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecc
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISY 494 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 494 (686)
.|...+.++ +.+..+...+.-++.|+.|++++|...+. ..+..+++|++|+|++|.+..+|.....--.|+.|.+++
T Consensus 165 ~L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSY-NRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcch-hhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 455666666 46666777778889999999999876654 467889999999999998888887443322699999998
Q ss_pred ccccccccccccCCCCCCeEEecCCCCCCCCCC---CCCCCCCceeeccCCc
Q 048062 495 CKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEE---DGLPTNLHSLEINSNK 543 (686)
Q Consensus 495 ~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~ 543 (686)
+.++.+- ++.++.+|+.|+++++ .+..... .+.+..|+.|.+.+|+
T Consensus 242 -N~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 242 -NALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -cHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 5666663 6889999999999984 4444333 3556789999999988
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=1.7e-05 Score=84.11 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=45.1
Q ss_pred hcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCe
Q 048062 434 LDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQ 513 (686)
Q Consensus 434 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 513 (686)
+..+.+|+.|++.++.... +...+..+++|++|++++|.+..+..... ++.|+.|++.+ +.+..+. ++..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~-l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLST-LTLLKELNLSG-NLISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhh-ccchhhheecc-Ccchhcc-CCccchhhhc
Confidence 3444455555554433222 11113444555555555554444433221 12355555555 3333332 2334555555
Q ss_pred EEecCCCCCCCCCC--CCCCCCCceeeccCCc
Q 048062 514 LRIGKGVELPSLEE--DGLPTNLHSLEINSNK 543 (686)
Q Consensus 514 L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~ 543 (686)
++++++ .+..+.. .....+++.+++.+|.
T Consensus 167 l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYN-RIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcc-hhhhhhhhhhhhccchHHHhccCCc
Confidence 555552 2333333 2334455555555554
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.53 E-value=2.5e-05 Score=85.24 Aligned_cols=118 Identities=23% Similarity=0.331 Sum_probs=83.7
Q ss_pred hcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCC-CCCcccc----ccccCCCCccEEeccCCCCCc
Q 048062 213 QDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGC-EGLVKLP----QSSLSLSSLREIEIYKCSSLV 287 (686)
Q Consensus 213 ~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~p----~~~~~l~~L~~L~l~~~~~l~ 287 (686)
..++.|+.|.+.+|..+... ++..+...+++|+.|++++| ......+ .....+++|+.|+++.|..++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDD-------SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hhCchhhHhhhcccccCChh-------hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 45899999999999877762 23344455699999999983 3322222 233467899999999987655
Q ss_pred cCC--CCC-CCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcc
Q 048062 288 SFP--EVA-LPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTY 337 (686)
Q Consensus 288 ~lp--~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~ 337 (686)
+.. .++ .+++|+.|.+.+|..++...-......++.|++|++++|..+++
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 432 233 27899999999888766555444445788899999999887643
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.41 E-value=0.00019 Score=48.41 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=28.9
Q ss_pred CCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCC
Q 048062 249 CRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE 291 (686)
Q Consensus 249 ~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~ 291 (686)
++|++|++++|. ++.+|..++.|++|+.|++++|. ++++++
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 467888888875 47777777888888888888874 666654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=0.00014 Score=80.89 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=50.0
Q ss_pred hhhhchhhhhhh-hcccchhh-hcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccccc
Q 048062 193 ELILSTKEQTYI-WKSHDGLL-QDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSL 270 (686)
Q Consensus 193 ~L~~l~l~~n~~-~~~~~~~~-~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~ 270 (686)
+|+.+++++... ...|...+ ..||.|+.|.+++-. +.. +.+..++..||+|..||++++. +..+ .+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~-------~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS 192 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDN-------DDFSQLCASFPNLRSLDISGTN-ISNL-SGIS 192 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecc-------hhHHHHhhccCccceeecCCCC-ccCc-HHHh
Confidence 455555554332 22222222 335666666665532 211 2355555555666666666653 2444 4555
Q ss_pred CCCCccEEeccCCCCCcc---CCCCCCCCCCcEEeccc
Q 048062 271 SLSSLREIEIYKCSSLVS---FPEVALPSKLKKIQIRE 305 (686)
Q Consensus 271 ~l~~L~~L~l~~~~~l~~---lp~~~~l~~L~~L~l~~ 305 (686)
.+++|+.|.+++-+ +.. +-.+..+++|+.||++.
T Consensus 193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccc
Confidence 66666666665543 222 12344466666666655
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.0002 Score=79.53 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=59.4
Q ss_pred hhcccchhccc---cchHhHhhhhccCCCCCcccCCCCcccccchhcccceeeeccCCcccc----cccCCCCcceEEEE
Q 048062 76 AYDVEDLLDQF---QTEAFRRKLVLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELS----VSISSLPALCKFII 148 (686)
Q Consensus 76 ~~~~~dvl~~l---~~~~~l~~l~i~~~~~~~~~~~~~~~~~~p~~l~~L~~L~l~~c~~~~----~~l~~l~~L~~L~l 148 (686)
..|..++++.+ ..-.+|++|+|+|...... .|..++-..||+|++|.+.+-.... .....+|+|+.|||
T Consensus 105 ~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~----~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI 180 (699)
T KOG3665|consen 105 TIDIISLLKDLLNEESRQNLQHLDISGSELFSN----GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI 180 (699)
T ss_pred hccHHHHHHHHHhHHHHHhhhhcCccccchhhc----cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeec
Confidence 34444555544 2456889999988643221 1555666679999999998833222 55677999999999
Q ss_pred cCccceeEccccccCCCccee
Q 048062 149 GGCKKVVWRSATDHLGSQNSV 169 (686)
Q Consensus 149 ~~~~~~~~~~~~~~~~~L~~L 169 (686)
++++...+ .++..+++|+.|
T Consensus 181 S~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 181 SGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred CCCCccCc-HHHhccccHHHH
Confidence 99766554 555556666666
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.13 E-value=0.00011 Score=78.10 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=46.2
Q ss_pred CCCCccEEeccCCCCCcc-CCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccE
Q 048062 271 SLSSLREIEIYKCSSLVS-FPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKR 349 (686)
Q Consensus 271 ~l~~L~~L~l~~~~~l~~-lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 349 (686)
.+..++.+.++.+. +.. ...+..+.+|+.|++.+ +.++.+..... .+++|++|+++++. ++.+.....++.|+.
T Consensus 70 ~l~~l~~l~l~~n~-i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~--~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL-IAKILNHLSKLKSLEALDLYD-NKIEKIENLLS--SLVNLQVLDLSFNK-ITKLEGLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhh-hhhhhcccccccceeeeeccc-cchhhcccchh--hhhcchheeccccc-cccccchhhccchhh
Confidence 44556666666653 333 33356677777777777 44555554222 46777777777643 665555555555666
Q ss_pred Eeecc
Q 048062 350 LEIYL 354 (686)
Q Consensus 350 L~l~~ 354 (686)
|++.+
T Consensus 145 L~l~~ 149 (414)
T KOG0531|consen 145 LNLSG 149 (414)
T ss_pred heecc
Confidence 66655
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00082 Score=64.08 Aligned_cols=187 Identities=15% Similarity=0.094 Sum_probs=99.2
Q ss_pred CCCCCCeeeecccCCcc--cccccccCCCCCcEEEecCceee-ecCCCCCCCCCccEEeecccccc--ccccccccCCCC
Q 048062 436 NNTSLETIAVSFCRNLK--ILPSGLHNLRQLQEIGIWECDLV-SFPQGGLPCAKLMRLEISYCKRL--QVLPKGLHNLTS 510 (686)
Q Consensus 436 ~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l--~~l~~~l~~l~~ 510 (686)
.++.++.+++.+|.... ++...+.++|.|+.|+++.|.+. .|...-.+..+|+.|.+.+ ..+ +.....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence 45666666666654432 22233456777777777777444 1221214455777777765 222 122234566777
Q ss_pred CCeEEecCCCCCCCC-----CCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCC
Q 048062 511 LQQLRIGKGVELPSL-----EEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGS 585 (686)
Q Consensus 511 L~~L~l~~c~~l~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 585 (686)
+++|+++.++ ++.+ .....-+.+++|+...|.... .... -.....+|++..+.+..||- .+...+.
T Consensus 148 vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-w~~~-~~l~r~Fpnv~sv~v~e~Pl-K~~s~ek----- 218 (418)
T KOG2982|consen 148 VTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQL-WLNK-NKLSRIFPNVNSVFVCEGPL-KTESSEK----- 218 (418)
T ss_pred hhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHH-HHHH-HhHHhhcccchheeeecCcc-cchhhcc-----
Confidence 7777777642 2211 112233567777777776332 1110 01234567777777777642 2221111
Q ss_pred CCCCCCccccceeecccccccccccc--ccCCCCCcCEEeecCCCCCCcCCC
Q 048062 586 GTTLPLPASLTTLWIFNFPNLERLSS--SIVDLQYLTSLYLLECPKLKYFPE 635 (686)
Q Consensus 586 ~~~~~~~~~L~~L~l~~~~~L~~l~~--~~~~l~~L~~L~i~~c~~l~~l~~ 635 (686)
.....+++..|.+.. +++.+... .+.+|+.|..|.+.+.|-...+..
T Consensus 219 --~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 219 --GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred --cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 011234555566655 45554432 346788888888888877776654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.86 E-value=0.0011 Score=44.70 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=13.2
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeeccc
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFC 448 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 448 (686)
+|++|++++| .++.+|..++++++|+.|++++|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 3444454443 33344433444444444444443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.51 E-value=0.00014 Score=61.04 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=42.8
Q ss_pred hhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCC
Q 048062 194 LILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLS 273 (686)
Q Consensus 194 L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~ 273 (686)
|+..++++|.+.+.++.+...|+-++.|+++++. +.++|.+ +..+ +.|+.|+++.|+. ...|..+..+.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-----~Aam----~aLr~lNl~~N~l-~~~p~vi~~L~ 123 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-----LAAM----PALRSLNLRFNPL-NAEPRVIAPLI 123 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-----Hhhh----HHhhhcccccCcc-ccchHHHHHHH
Confidence 3344555555555555555555666666666553 5555554 5555 5566666666543 44454444455
Q ss_pred CccEEeccCC
Q 048062 274 SLREIEIYKC 283 (686)
Q Consensus 274 ~L~~L~l~~~ 283 (686)
+|-.|+..++
T Consensus 124 ~l~~Lds~~n 133 (177)
T KOG4579|consen 124 KLDMLDSPEN 133 (177)
T ss_pred hHHHhcCCCC
Confidence 5555554443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.37 E-value=0.006 Score=55.14 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=50.2
Q ss_pred CCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCC-CCCccEEeeccccccccccc--cccCCCCCCeEEe
Q 048062 440 LETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLP-CAKLMRLEISYCKRLQVLPK--GLHNLTSLQQLRI 516 (686)
Q Consensus 440 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~-~~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l 516 (686)
...+++++|..... ..+..++.|.+|.+.+|.+..|.+.... +++|..|.+.+ +.+..+.+ .+..++.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeee
Confidence 33444444433222 3344556666666666666655443332 34566666666 33433322 3455666666666
Q ss_pred cCCCCCCCCCC-----CCCCCCCceeeccCCc
Q 048062 517 GKGVELPSLEE-----DGLPTNLHSLEINSNK 543 (686)
Q Consensus 517 ~~c~~l~~~~~-----~~~~~~L~~L~l~~~~ 543 (686)
-++|. +.... ...+++|++||+..-.
T Consensus 121 l~Npv-~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNPV-EHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCch-hcccCceeEEEEecCcceEeehhhhh
Confidence 66442 11111 1235677777776644
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.22 E-value=0.0044 Score=56.01 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=50.7
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc--cccCCCC
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ--SSLSLSS 274 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~--~~~~l~~ 274 (686)
+|++.|.+...+. +..+++|.+|.+.++. ++.|.+. +. ..+++|..|.+.+|.. .++-+ .+..|+.
T Consensus 47 iDLtdNdl~~l~~--lp~l~rL~tLll~nNr-It~I~p~-----L~---~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 47 IDLTDNDLRKLDN--LPHLPRLHTLLLNNNR-ITRIDPD-----LD---TFLPNLKTLILTNNSI-QELGDLDPLASCPK 114 (233)
T ss_pred ecccccchhhccc--CCCccccceEEecCCc-ceeeccc-----hh---hhccccceEEecCcch-hhhhhcchhccCCc
Confidence 3444444443332 3456666666666554 6655443 22 2235666666666542 22211 2446667
Q ss_pred ccEEeccCCCCCccCCC-----CCCCCCCcEEecccc
Q 048062 275 LREIEIYKCSSLVSFPE-----VALPSKLKKIQIREC 306 (686)
Q Consensus 275 L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~~ 306 (686)
|++|.+-+|+ .+.-.. +..+|+|+.|++.+.
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 7777776665 333221 444777777777653
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0035 Score=59.34 Aligned_cols=104 Identities=19% Similarity=0.113 Sum_probs=70.9
Q ss_pred cccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhc
Q 048062 119 LLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILS 197 (686)
Q Consensus 119 l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l 197 (686)
+.+.++|+.-+|..-. .....+|.|++|.++-|++. +|. .|..|++|+.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs----------sL~-------------------pl~rCtrLkEl 68 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS----------SLA-------------------PLQRCTRLKEL 68 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccc----------cch-------------------hHHHHHHHHHH
Confidence 4566667666665444 44557888999988865532 222 45778888888
Q ss_pred hhhhhhhhcccchh-hhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEE
Q 048062 198 TKEQTYIWKSHDGL-LQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLA 255 (686)
Q Consensus 198 ~l~~n~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~ 255 (686)
++..|.+.++.+-. +.++|+|+.|-|..|+....-+..-....+..| |+|+.||
T Consensus 69 YLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L----PnLkKLD 123 (388)
T KOG2123|consen 69 YLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL----PNLKKLD 123 (388)
T ss_pred HHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc----ccchhcc
Confidence 88888887765532 567888888888888766665554434455566 7777775
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.0012 Score=62.29 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=49.9
Q ss_pred CCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEe
Q 048062 249 CRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILK 328 (686)
Q Consensus 249 ~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 328 (686)
.+.+.|+..||. ++.+. ....++.|+.|.|+-|. ++++.++..+++|+.|++.. +.+.++.+.....++++|+.|-
T Consensus 19 ~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCC-ccHHH-HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 344555555553 23322 12345555555555543 55555555555566666555 3455555555445566666666
Q ss_pred EecCCCCcccccc------cCCCcccEEe
Q 048062 329 IWDCHSLTYIAGV------QLPPSLKRLE 351 (686)
Q Consensus 329 l~~~~~l~~~~~~------~~~~~L~~L~ 351 (686)
|..++....-+.. ..+|+|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 6665543332221 2355666554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.23 E-value=0.0073 Score=57.03 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=60.3
Q ss_pred hhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCC--CCCccccccccCCCCccEEeccCCCC--Cc
Q 048062 212 LQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGC--EGLVKLPQSSLSLSSLREIEIYKCSS--LV 287 (686)
Q Consensus 212 ~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~--~~l~~~p~~~~~l~~L~~L~l~~~~~--l~ 287 (686)
...+..|+.|++.++. ++.+ ..++.| ++|++|.++.| +....++.....+++|++|++++|.. +.
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~------~~~P~L----p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTL------TNFPKL----PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred cccccchhhhhhhccc-eeec------ccCCCc----chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc
Confidence 3567778888887775 4443 235556 89999999888 54455665566779999999998852 34
Q ss_pred cCCCCCCCCCCcEEecccccc
Q 048062 288 SFPEVALPSKLKKIQIRECDA 308 (686)
Q Consensus 288 ~lp~~~~l~~L~~L~l~~~~~ 308 (686)
+++++..+.+|..|++..|..
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred ccchhhhhcchhhhhcccCCc
Confidence 555666777788888877753
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.93 E-value=0.0012 Score=55.61 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=25.8
Q ss_pred CCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecC
Q 048062 461 LRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGK 518 (686)
Q Consensus 461 l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 518 (686)
++.++.|++++|.+..+|.....++.|+.|+++. +.+...|..+..+.+|-.|+..+
T Consensus 76 f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCC
Confidence 3444555555555555555444444555555554 23333333333344444444333
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.0053 Score=55.54 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=53.4
Q ss_pred CccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC---CCCCCCceeeccCCcchhhhhhhcccccCCCCCc
Q 048062 486 KLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED---GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSL 562 (686)
Q Consensus 486 ~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L 562 (686)
.++.++-+++.-...--+.+..+++++.|.+.+|..+.+..-. +..++|+.|+|++|+.+++.--. .+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~---~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA---CLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH---HHHHhhhh
Confidence 4556666554333332335566677777777777766554321 35678888888888877755444 66777888
Q ss_pred cEEEeccCCC
Q 048062 563 RQLTIINCDD 572 (686)
Q Consensus 563 ~~L~i~~c~~ 572 (686)
+.|.|.+.+.
T Consensus 179 r~L~l~~l~~ 188 (221)
T KOG3864|consen 179 RRLHLYDLPY 188 (221)
T ss_pred HHHHhcCchh
Confidence 8888777543
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.0095 Score=53.96 Aligned_cols=68 Identities=29% Similarity=0.441 Sum_probs=49.5
Q ss_pred hhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccc-ccccCCCCccEEeccCCCC
Q 048062 211 LLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP-QSSLSLSSLREIEIYKCSS 285 (686)
Q Consensus 211 ~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p-~~~~~l~~L~~L~l~~~~~ 285 (686)
.+..++.++.|.+.+|..+.+ ..+..+....++|+.|+|++|+.+++.- ..+..+++|+.|.+.+-+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD-------~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDD-------WCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhh-------HHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 356788888899999987776 4566666677889999999888765432 3455777888887776543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.25 E-value=0.024 Score=53.62 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=24.7
Q ss_pred CCCCCcEEEecCc--eee-ecCCCCCCCCCccEEeeccccccccccc--cccCCCCCCeEEecCCC
Q 048062 460 NLRQLQEIGIWEC--DLV-SFPQGGLPCAKLMRLEISYCKRLQVLPK--GLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 460 ~l~~L~~L~l~~~--~l~-~l~~~~~~~~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~l~~c~ 520 (686)
.+++|++|.++.| .+. .++.....+|+|+++.+++ ++++.+.. .+..+.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCC
Confidence 3445555555555 222 2222223334555555555 22222111 23344444555555543
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.62 E-value=0.066 Score=50.83 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=22.2
Q ss_pred ccCCCCccEEeccCCCCCccCCC-----CCCCCCCcEEecccc
Q 048062 269 SLSLSSLREIEIYKCSSLVSFPE-----VALPSKLKKIQIREC 306 (686)
Q Consensus 269 ~~~l~~L~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~~ 306 (686)
+..|++|+..++++|..-..+|+ +...+.|++|.+++|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 34667777777777653333432 344566666666664
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.33 E-value=0.1 Score=49.63 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=68.5
Q ss_pred HHhhcCCCCCCeeeecccCCccccccc----ccCCCCCcEEEecCceeeecCC--------------CCCCCCCccEEee
Q 048062 431 AERLDNNTSLETIAVSFCRNLKILPSG----LHNLRQLQEIGIWECDLVSFPQ--------------GGLPCAKLMRLEI 492 (686)
Q Consensus 431 ~~~l~~l~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~l~~l~~--------------~~~~~~~L~~L~l 492 (686)
...+.+||.|+..++++|..-...|+. +..-+.|++|.+++|.+.-+.. -...-|.|+....
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 334556677777777766555444432 3345667777777775543321 1122346666666
Q ss_pred ccccccccccc-----cccCCCCCCeEEecCCCCCCCCC-------CCCCCCCCceeeccCCcchhhhhh-hcccccCCC
Q 048062 493 SYCKRLQVLPK-----GLHNLTSLQQLRIGKGVELPSLE-------EDGLPTNLHSLEINSNKEIWKSMI-ERGRGFHRF 559 (686)
Q Consensus 493 ~~~~~l~~l~~-----~l~~l~~L~~L~l~~c~~l~~~~-------~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~l 559 (686)
.. +.+...|. .+..-..|+++.+..+. ++.-. ....+.+|+.|++.+|. ++.... .-+..+..+
T Consensus 165 gr-NRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W 241 (388)
T COG5238 165 GR-NRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEW 241 (388)
T ss_pred cc-chhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhccc
Confidence 55 34443332 33344566777666632 22110 01234567777777664 210100 000134455
Q ss_pred CCccEEEeccC
Q 048062 560 SSLRQLTIINC 570 (686)
Q Consensus 560 ~~L~~L~i~~c 570 (686)
+.|+.|.+.+|
T Consensus 242 ~~lrEL~lnDC 252 (388)
T COG5238 242 NLLRELRLNDC 252 (388)
T ss_pred chhhhccccch
Confidence 66777777776
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.23 E-value=0.075 Score=29.58 Aligned_cols=19 Identities=53% Similarity=0.754 Sum_probs=9.8
Q ss_pred ccEEEccCCCCCcccccccc
Q 048062 251 LEYLALSGCEGLVKLPQSSL 270 (686)
Q Consensus 251 L~~L~l~~~~~l~~~p~~~~ 270 (686)
|++|++++|. ++.+|.+++
T Consensus 2 L~~Ldls~n~-l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNN-LTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSE-ESEEGTTTT
T ss_pred ccEEECCCCc-CEeCChhhc
Confidence 5555666553 345555443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.30 E-value=0.14 Score=26.44 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=4.8
Q ss_pred CCcEEEecCceeee
Q 048062 463 QLQEIGIWECDLVS 476 (686)
Q Consensus 463 ~L~~L~l~~~~l~~ 476 (686)
+|+.|++++|.+..
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.58 E-value=0.6 Score=40.10 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=34.3
Q ss_pred hhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc-cccCCCCccEEeccC
Q 048062 204 IWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ-SSLSLSSLREIEIYK 282 (686)
Q Consensus 204 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~-~~~~l~~L~~L~l~~ 282 (686)
+..+....|..+++|+.+.+.+. +..++... +... ++|+.+.+.. .+..++. .+..+++|+.+.+..
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~----F~~~----~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFPNN--LTSIGDNA----FSNC----KSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEESST--TSCE-TTT----TTT-----TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT
T ss_pred eeEeChhhccccccccccccccc--ccccceee----eecc----cccccccccc--cccccccccccccccccccccCc
Confidence 34444555555656666666542 55544421 3333 4566666644 1233333 233466666666644
Q ss_pred CCCCccCCC--CCCCCCCcEEeccc
Q 048062 283 CSSLVSFPE--VALPSKLKKIQIRE 305 (686)
Q Consensus 283 ~~~l~~lp~--~~~l~~L~~L~l~~ 305 (686)
. +..++. +... +|+.+.+..
T Consensus 91 ~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 91 N--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T---BEEHTTTTTT--T--EEE-TT
T ss_pred c--ccEEchhhhcCC-CceEEEECC
Confidence 2 333332 3334 566665543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.53 E-value=0.25 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=8.6
Q ss_pred CcEEEecCceeeecCCC
Q 048062 464 LQEIGIWECDLVSFPQG 480 (686)
Q Consensus 464 L~~L~l~~~~l~~l~~~ 480 (686)
|++|++++|.++.||..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555555443
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.46 E-value=0.63 Score=39.94 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=58.0
Q ss_pred ccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc-cccCCCCccEEeccCCCC
Q 048062 207 SHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ-SSLSLSSLREIEIYKCSS 285 (686)
Q Consensus 207 ~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~-~~~~l~~L~~L~l~~~~~ 285 (686)
++...|..+.+|+.+.+.+ .++.++... +... ++|+.+.+.+. +..++. .+..+++|+.+.+.+ .
T Consensus 3 i~~~~F~~~~~l~~i~~~~--~~~~I~~~~----F~~~----~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~ 68 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN--TIKKIGENA----FSNC----TSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--N 68 (129)
T ss_dssp E-TTTTTT-TT--EEEETS--T--EE-TTT----TTT-----TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--T
T ss_pred ECHHHHhCCCCCCEEEECC--CeeEeChhh----cccc----ccccccccccc--ccccceeeeecccccccccccc--c
Confidence 3455677888899988874 367776642 4444 78999999874 466655 355777899999976 3
Q ss_pred CccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEec
Q 048062 286 LVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWD 331 (686)
Q Consensus 286 l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~ 331 (686)
+..++. +..+++|+.+.+.. .+..++.... .+. +|+.+.+..
T Consensus 69 ~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f-~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 69 LKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSF-SNC-NLKEINIPS 112 (129)
T ss_dssp T-EE-TTTTTT-TTECEEEETT--T-BEEHTTTT-TT--T--EEE-TT
T ss_pred ccccccccccccccccccccCc--cccEEchhhh-cCC-CceEEEECC
Confidence 455554 55588999999865 2555555443 234 788777653
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.01 E-value=1.9 Score=24.95 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=12.0
Q ss_pred CcCccEeeccccccccc
Q 048062 215 ICSLKSLEIRSCPKLQS 231 (686)
Q Consensus 215 ~~~L~~L~L~~~~~l~~ 231 (686)
+++|++|+|++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777776665
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.50 E-value=1.2 Score=25.82 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=12.1
Q ss_pred CCCcEEEecCceeeecCCC
Q 048062 462 RQLQEIGIWECDLVSFPQG 480 (686)
Q Consensus 462 ~~L~~L~l~~~~l~~l~~~ 480 (686)
++|+.|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666653
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.50 E-value=1.2 Score=25.82 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=12.1
Q ss_pred CCCcEEEecCceeeecCCC
Q 048062 462 RQLQEIGIWECDLVSFPQG 480 (686)
Q Consensus 462 ~~L~~L~l~~~~l~~l~~~ 480 (686)
++|+.|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666653
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.43 E-value=4.9 Score=23.37 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=9.5
Q ss_pred cccceeeccccccccccc
Q 048062 593 ASLTTLWIFNFPNLERLS 610 (686)
Q Consensus 593 ~~L~~L~l~~~~~L~~l~ 610 (686)
++|+.|.+++ ++|+++|
T Consensus 2 ~~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSN-NQLTSLP 18 (26)
T ss_pred cccceeecCC-CccccCc
Confidence 4555666665 4555555
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.55 E-value=6.5 Score=41.87 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=48.7
Q ss_pred hhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccccc--CCCCccEEeccCCCCCccC
Q 048062 212 LQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSL--SLSSLREIEIYKCSSLVSF 289 (686)
Q Consensus 212 ~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~--~l~~L~~L~l~~~~~l~~l 289 (686)
-.+++.+..++|++|. +..+ +.+..+....|+|+.|+|++|......-.++. +...|++|-+.+|+.++.+
T Consensus 214 ~~n~p~i~sl~lsnNr-L~~L------d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNR-LYHL------DALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred hcCCcceeeeecccch-hhch------hhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 3678889999999885 7776 44777777889999999999833222222233 3345777888887765554
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=55.94 E-value=1.2 Score=41.59 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=40.4
Q ss_pred hhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCC
Q 048062 193 ELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSL 272 (686)
Q Consensus 193 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l 272 (686)
..+.+|++.|++...... ++.++.|.+|+++.+. +..+|.. .+++ ..++.+++..|. .+..|.+++..
T Consensus 43 r~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq-~~~~~~d-----~~q~----~e~~~~~~~~n~-~~~~p~s~~k~ 110 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQ-IKFLPKD-----AKQQ----RETVNAASHKNN-HSQQPKSQKKE 110 (326)
T ss_pred eeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhh-HhhChhh-----HHHH----HHHHHHHhhccc-hhhCCcccccc
Confidence 334445555554444332 3445555555555543 4544443 4444 445555555442 35556666666
Q ss_pred CCccEEeccCCC
Q 048062 273 SSLREIEIYKCS 284 (686)
Q Consensus 273 ~~L~~L~l~~~~ 284 (686)
++++++++..++
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 666666555544
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=46.96 E-value=1.8 Score=40.54 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=69.9
Q ss_pred hhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCC
Q 048062 204 IWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKC 283 (686)
Q Consensus 204 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~ 283 (686)
+..++-..+..+.+-+.|+++.+. +..+... ++.+ +.|..|+++.+. +..+|..++....++.+++..|
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r-~vn~~~n-----~s~~----t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n 98 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNR-LVNLGKN-----FSIL----TRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN 98 (326)
T ss_pred hcccchhhhhccceeeeehhhhhH-HHhhccc-----hHHH----HHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc
Confidence 344555667889999999999876 4444333 6666 888999999875 4888988888888888888776
Q ss_pred CCCccCCC-CCCCCCCcEEeccccc
Q 048062 284 SSLVSFPE-VALPSKLKKIQIRECD 307 (686)
Q Consensus 284 ~~l~~lp~-~~~l~~L~~L~l~~~~ 307 (686)
. ....|. .+..+++++++..+..
T Consensus 99 ~-~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 99 N-HSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred c-hhhCCccccccCCcchhhhccCc
Confidence 3 677775 6778999999888765
No 83
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=42.77 E-value=2.3e+02 Score=25.01 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 048062 4 IGEAILTASVDLLVNKLASEGILFFARQEKIQDDLMEWENMLEMIKAVLDDAE 56 (686)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~a~~~~~~ 56 (686)
+||.+.+|++..+++.+.......-.+.......+++|+.+++.+.-.....+
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~ 54 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEID 54 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHH
Confidence 56777777777777777666666666666666666666666665555544443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=42.10 E-value=17 Score=20.37 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=4.1
Q ss_pred CCcEEEecCce
Q 048062 463 QLQEIGIWECD 473 (686)
Q Consensus 463 ~L~~L~l~~~~ 473 (686)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.65 E-value=18 Score=38.62 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=28.4
Q ss_pred hcCcCccEeecccccc-cccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc-------cccCCCCccEEe
Q 048062 213 QDICSLKSLEIRSCPK-LQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ-------SSLSLSSLREIE 279 (686)
Q Consensus 213 ~~~~~L~~L~L~~~~~-l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~-------~~~~l~~L~~L~ 279 (686)
...|+|..|+|+++.. +..-+ .+.++ ....|++|-+.||+..+.+-. ....+|+|..||
T Consensus 241 q~apklk~L~LS~N~~~~~~~~------el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSES------ELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred Hhcchhheeecccchhhhcchh------hhhhh--cCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 4567777777776611 11111 12222 113567777777665443321 112556666554
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=39.75 E-value=22 Score=20.74 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=10.0
Q ss_pred CCCcEEEecCceeeec
Q 048062 462 RQLQEIGIWECDLVSF 477 (686)
Q Consensus 462 ~~L~~L~l~~~~l~~l 477 (686)
.+|+.|++++|.+..+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4666777777655544
No 87
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.91 E-value=2.2e+02 Score=22.47 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhhhhcccchhccccch
Q 048062 33 KIQDDLMEWENMLEMIKAVLDDAEEKKTTNRFVKKWLGKLQNLAYDVEDLLDQFQTE 89 (686)
Q Consensus 33 ~~~~~l~~l~~~~~~~~a~~~~~~~k~~~~~l~~~w~~~l~~~~~~~~dvl~~l~~~ 89 (686)
.+..+.+.++......++...+++-++..++-..+ ...++|.|.|+.+
T Consensus 34 kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~---------~sr~~V~d~L~q~ 81 (87)
T PF10883_consen 34 KLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRR---------LSRDSVIDQLQQH 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc---------CCHHHHHHHHHHc
Confidence 34455556666666666666666666544442222 2344666666544
No 88
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=28.83 E-value=3.6e+02 Score=23.25 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=5.2
Q ss_pred hHHHHHHHHHH
Q 048062 3 IIGEAILTASV 13 (686)
Q Consensus 3 ~~~~~~~~~~~ 13 (686)
.++|+|+..+.
T Consensus 78 ll~E~fiF~Va 88 (134)
T PF07047_consen 78 LLGEAFIFSVA 88 (134)
T ss_pred HHHHHHHHHHH
Confidence 34555555433
No 89
>PRK13677 hypothetical protein; Provisional
Probab=26.39 E-value=1.8e+02 Score=24.20 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHH
Q 048062 18 NKLASEGILFFARQEKIQDDLMEWENMLE-MIKAVLDDAE 56 (686)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~a~~~~~~ 56 (686)
+++....-.+.-...++-++++.||.|+. ++..+.++++
T Consensus 84 d~i~~~~~~e~d~K~kiL~dLrHLE~Vv~~KIaEIe~dLe 123 (125)
T PRK13677 84 DQICQRDREEVDLKRKILDDLRHLESVVANKISEIEADLE 123 (125)
T ss_pred HHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555566667788889999999885 6666666665
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.63 E-value=1.3e+02 Score=19.86 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=4.3
Q ss_pred CCCCCceeec
Q 048062 530 LPTNLHSLEI 539 (686)
Q Consensus 530 ~~~~L~~L~l 539 (686)
+|++|++|.+
T Consensus 32 lP~sl~~L~f 41 (44)
T PF05725_consen 32 LPNSLKSLSF 41 (44)
T ss_pred cCCCceEEEe
Confidence 3444444443
No 91
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=23.25 E-value=2.2e+02 Score=23.85 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHH
Q 048062 18 NKLASEGILFFARQEKIQDDLMEWENMLE-MIKAVLDDAE 56 (686)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~a~~~~~~ 56 (686)
+++......+.-...++-++++.||.|+. ++..+.++++
T Consensus 84 dqi~~~~~~~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dle 123 (125)
T PF11944_consen 84 DQITGREQAEVDLKQKILDDLRHLEKVVNSKIAEIERDLE 123 (125)
T ss_pred HHHHcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555566778888999999985 5555666655
Done!