Query 048062
Match_columns 686
No_of_seqs 413 out of 3836
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 09:58:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-41 6.7E-46 387.7 21.9 529 85-675 121-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.9E-38 1.7E-42 359.6 28.6 452 189-683 197-718 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.6E-34 8.8E-39 321.5 34.0 490 113-652 25-559 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 9.6E-34 3.3E-38 316.9 32.9 480 113-652 24-557 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 8.1E-33 2.8E-37 313.6 37.4 492 119-653 72-622 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-33 6.3E-38 314.6 31.4 481 90-631 32-559 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 6.9E-33 2.3E-37 314.2 32.4 516 90-651 25-595 (680)
8 3t6q_A CD180 antigen; protein- 100.0 1.5E-31 5.3E-36 299.0 33.9 480 140-683 32-561 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-31 7.9E-36 294.0 26.4 441 114-628 19-508 (549)
10 2z63_A TOLL-like receptor 4, v 100.0 3.3E-31 1.1E-35 294.2 27.8 479 113-651 20-529 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-30 1.2E-34 297.9 36.7 488 113-651 17-537 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-31 1.5E-35 291.7 24.2 432 140-651 25-508 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 2E-30 6.7E-35 288.0 28.2 485 140-684 27-533 (570)
14 4eco_A Uncharacterized protein 100.0 6.8E-31 2.3E-35 293.6 24.0 347 228-628 194-598 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 9.5E-31 3.2E-35 286.9 19.5 410 187-651 40-479 (520)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-28 3.6E-33 285.3 32.5 466 139-651 22-515 (844)
17 4ecn_A Leucine-rich repeat pro 100.0 1.8E-28 6.2E-33 278.3 28.2 348 184-571 440-838 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.3E-29 1.8E-33 273.0 20.7 436 114-628 14-479 (520)
19 4eco_A Uncharacterized protein 100.0 7.7E-29 2.6E-33 277.0 21.7 415 192-652 81-599 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 3E-28 1E-32 276.5 25.6 344 263-652 438-839 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.7E-28 1.6E-32 267.7 20.4 410 187-651 71-508 (562)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-26 5.2E-31 260.3 32.9 221 414-651 349-578 (635)
23 1jl5_A Outer protein YOPM; leu 100.0 4.7E-27 1.6E-31 250.9 26.4 403 140-651 10-427 (454)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-26 1.1E-30 253.0 23.5 436 114-628 45-508 (562)
25 1o6v_A Internalin A; bacterial 99.9 2.2E-25 7.4E-30 240.3 28.0 318 249-627 68-385 (466)
26 1jl5_A Outer protein YOPM; leu 99.9 6.8E-26 2.3E-30 241.9 22.6 334 193-628 92-427 (454)
27 4g8a_A TOLL-like receptor 4; l 99.9 7.6E-25 2.6E-29 246.4 31.1 461 113-628 44-578 (635)
28 1o6v_A Internalin A; bacterial 99.9 5.8E-25 2E-29 236.9 28.5 348 118-578 44-392 (466)
29 3v47_A TOLL-like receptor 5B a 99.9 5.7E-25 1.9E-29 236.8 25.2 104 415-518 276-380 (455)
30 3o6n_A APL1; leucine-rich repe 99.9 2E-24 6.7E-29 227.3 25.1 305 190-543 43-350 (390)
31 3v47_A TOLL-like receptor 5B a 99.9 1E-24 3.5E-29 234.7 23.5 362 114-525 24-411 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 7.4E-24 2.5E-28 226.4 27.5 228 209-493 35-262 (457)
33 4fmz_A Internalin; leucine ric 99.9 3.9E-24 1.3E-28 221.4 23.9 301 213-570 41-343 (347)
34 4fmz_A Internalin; leucine ric 99.9 7.2E-24 2.4E-28 219.4 23.6 302 118-496 42-344 (347)
35 3bz5_A Internalin-J, INLJ; leu 99.9 9.3E-24 3.2E-28 225.6 24.3 353 118-580 40-394 (457)
36 3oja_B Anopheles plasmodium-re 99.9 1.1E-23 3.7E-28 234.0 24.9 305 190-543 49-356 (597)
37 3o6n_A APL1; leucine-rich repe 99.9 3E-23 1E-27 218.3 20.6 305 139-520 43-350 (390)
38 2id5_A Lingo-1, leucine rich r 99.9 3.2E-22 1.1E-26 216.5 25.9 273 188-520 52-331 (477)
39 3oja_B Anopheles plasmodium-re 99.9 1.3E-22 4.3E-27 225.4 20.8 305 139-520 49-356 (597)
40 2id5_A Lingo-1, leucine rich r 99.9 9.9E-22 3.4E-26 212.6 23.7 293 216-543 32-331 (477)
41 3ogk_B Coronatine-insensitive 99.9 1.6E-22 5.4E-27 225.4 8.9 181 124-331 54-252 (592)
42 1xku_A Decorin; proteoglycan, 99.9 6.4E-20 2.2E-24 188.1 25.3 150 414-570 171-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 5.1E-20 1.7E-24 189.0 23.0 282 217-570 34-330 (332)
44 3ogk_B Coronatine-insensitive 99.8 4.9E-23 1.7E-27 229.5 -0.4 347 190-569 162-547 (592)
45 2p1m_B Transport inhibitor res 99.8 3E-22 1E-26 223.2 4.5 111 214-333 128-246 (594)
46 1xku_A Decorin; proteoglycan, 99.8 2.9E-19 9.9E-24 183.2 26.1 128 414-542 192-329 (330)
47 4fcg_A Uncharacterized protein 99.8 1.4E-20 4.7E-25 192.3 14.8 218 414-648 81-309 (328)
48 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-19 4.1E-24 186.2 20.5 283 194-519 35-330 (332)
49 1ogq_A PGIP-2, polygalacturona 99.8 4.2E-20 1.4E-24 187.5 14.3 132 414-546 174-305 (313)
50 2p1m_B Transport inhibitor res 99.8 2.4E-21 8.1E-26 216.0 4.9 200 414-629 289-518 (594)
51 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-20 1.1E-24 188.3 11.9 250 379-653 51-304 (313)
52 4fcg_A Uncharacterized protein 99.8 2.3E-19 8E-24 183.1 16.7 196 414-626 104-310 (328)
53 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 9E-23 188.8 25.9 255 250-571 41-295 (622)
54 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-18 3.9E-23 191.7 21.7 263 215-551 39-302 (622)
55 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-21 1.6E-25 206.5 2.5 105 532-650 313-437 (461)
56 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-21 1.1E-25 207.8 -0.8 129 414-543 284-438 (461)
57 2z80_A TOLL-like receptor 2, v 99.8 5.1E-18 1.7E-22 175.7 17.4 130 192-333 76-209 (353)
58 3zyi_A Leucine-rich repeat-con 99.8 1.8E-17 6.1E-22 177.6 22.1 219 414-651 75-301 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 4.8E-17 1.6E-21 173.6 23.2 223 379-628 65-290 (440)
60 3zyj_A Leucine-rich repeat-con 99.8 4.2E-17 1.4E-21 174.0 22.7 221 412-651 62-290 (440)
61 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-18 5E-23 176.6 10.7 133 435-573 141-275 (317)
62 2z80_A TOLL-like receptor 2, v 99.8 3.9E-18 1.3E-22 176.5 13.9 226 414-651 76-312 (353)
63 3zyi_A Leucine-rich repeat-con 99.8 6.1E-17 2.1E-21 173.5 23.1 222 379-628 76-301 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.7 8.8E-19 3E-23 178.3 6.9 262 198-525 16-278 (317)
65 2z66_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 163.5 19.2 222 412-651 26-259 (306)
66 2z66_A Variable lymphocyte rec 99.7 2.5E-16 8.4E-21 159.5 21.1 129 414-543 126-259 (306)
67 3oja_A Leucine-rich immune mol 99.7 3E-17 1E-21 176.8 14.9 243 241-568 26-270 (487)
68 3oja_A Leucine-rich immune mol 99.7 1.5E-16 5.2E-21 171.3 17.5 227 399-653 21-250 (487)
69 2xwt_C Thyrotropin receptor; s 99.7 1.7E-16 5.6E-21 154.4 16.1 200 412-652 29-238 (239)
70 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.9E-21 154.9 15.6 194 463-679 32-236 (239)
71 1ozn_A Reticulon 4 receptor; N 99.7 8.1E-16 2.8E-20 153.9 20.1 200 413-628 31-236 (285)
72 1wwl_A Monocyte differentiatio 99.7 5.5E-17 1.9E-21 164.6 11.0 102 414-520 201-307 (312)
73 1ozn_A Reticulon 4 receptor; N 99.7 9.5E-16 3.3E-20 153.4 18.4 216 417-651 14-236 (285)
74 1wwl_A Monocyte differentiatio 99.7 1.4E-16 4.8E-21 161.5 9.2 200 436-651 93-307 (312)
75 4ay9_X Follicle-stimulating ho 99.7 3.3E-15 1.1E-19 154.0 19.3 220 412-649 28-255 (350)
76 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.5E-20 150.7 17.3 195 377-604 9-206 (290)
77 2z62_A TOLL-like receptor 4, v 99.6 3.9E-15 1.3E-19 148.2 16.5 200 412-628 26-235 (276)
78 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.2E-19 149.1 17.9 240 219-518 12-255 (350)
79 1p9a_G Platelet glycoprotein I 99.6 2.4E-14 8.3E-19 143.1 18.8 195 414-628 10-206 (290)
80 1h6u_A Internalin H; cell adhe 99.6 2.1E-14 7.2E-19 145.0 18.3 102 213-332 38-139 (308)
81 2o6q_A Variable lymphocyte rec 99.6 2.5E-14 8.6E-19 141.7 18.0 155 458-628 57-216 (270)
82 2ast_B S-phase kinase-associat 99.6 2.9E-16 1E-20 161.3 3.9 256 379-666 48-318 (336)
83 2o6q_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 139.9 18.5 195 380-604 18-216 (270)
84 1h6u_A Internalin H; cell adhe 99.6 1.3E-14 4.3E-19 146.7 14.7 187 118-354 39-226 (308)
85 2z62_A TOLL-like receptor 4, v 99.6 3.3E-14 1.1E-18 141.4 16.9 205 426-649 18-233 (276)
86 4glp_A Monocyte differentiatio 99.6 2.5E-14 8.6E-19 144.8 13.7 224 415-651 65-305 (310)
87 3rfs_A Internalin B, repeat mo 99.5 3.1E-14 1.1E-18 141.1 12.8 197 118-362 39-239 (272)
88 3rfs_A Internalin B, repeat mo 99.5 9.9E-14 3.4E-18 137.5 16.2 179 414-616 63-245 (272)
89 2ast_B S-phase kinase-associat 99.5 1.6E-14 5.5E-19 148.3 10.8 58 415-472 196-257 (336)
90 4glp_A Monocyte differentiatio 99.5 1.5E-14 5.2E-19 146.4 9.8 196 414-628 91-305 (310)
91 3m19_A Variable lymphocyte rec 99.5 9.2E-13 3.2E-17 128.8 16.4 170 380-570 16-189 (251)
92 3goz_A Leucine-rich repeat-con 99.5 6.5E-14 2.2E-18 145.1 7.8 256 198-496 4-295 (362)
93 2ca6_A RAN GTPase-activating p 99.5 1.3E-14 4.3E-19 152.1 2.3 153 414-570 122-313 (386)
94 2ca6_A RAN GTPase-activating p 99.4 4E-14 1.4E-18 148.2 5.8 242 212-498 28-316 (386)
95 1h6t_A Internalin B; cell adhe 99.4 4.7E-13 1.6E-17 133.8 9.8 166 118-332 44-210 (291)
96 3m19_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 126.4 13.4 133 188-333 55-190 (251)
97 1h6t_A Internalin B; cell adhe 99.4 1.2E-12 4.1E-17 130.8 11.9 168 87-307 43-211 (291)
98 3goz_A Leucine-rich repeat-con 99.4 2E-13 6.7E-18 141.5 5.9 106 414-519 167-294 (362)
99 3cvr_A Invasion plasmid antige 99.4 3E-12 1E-16 139.0 14.9 182 415-628 60-241 (571)
100 4ezg_A Putative uncharacterize 99.4 2.1E-12 7.1E-17 121.1 12.0 147 414-570 44-191 (197)
101 4ezg_A Putative uncharacterize 99.4 1.4E-12 4.9E-17 122.2 10.4 148 117-305 41-190 (197)
102 3cvr_A Invasion plasmid antige 99.4 3.4E-12 1.2E-16 138.5 13.6 91 249-354 59-149 (571)
103 1m9s_A Internalin B; cell inva 99.3 6.3E-12 2.2E-16 138.0 14.9 144 190-354 19-162 (605)
104 1m9s_A Internalin B; cell inva 99.3 5.6E-12 1.9E-16 138.4 11.2 166 118-306 41-207 (605)
105 2o6s_A Variable lymphocyte rec 99.3 3.1E-11 1.1E-15 114.2 13.5 138 458-617 48-189 (208)
106 1xeu_A Internalin C; cellular 99.3 2.9E-11 1E-15 118.7 12.4 171 189-393 16-186 (263)
107 3e6j_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 113.1 15.0 130 412-543 38-170 (229)
108 2o6s_A Variable lymphocyte rec 99.2 5.4E-11 1.8E-15 112.5 13.6 155 413-580 27-185 (208)
109 1dce_A Protein (RAB geranylger 99.2 1.2E-12 4.1E-17 142.9 1.0 34 138-171 346-379 (567)
110 2v9t_B SLIT homolog 2 protein 99.2 1.1E-10 3.9E-15 111.2 14.7 129 412-543 30-163 (220)
111 1xeu_A Internalin C; cellular 99.2 3.8E-11 1.3E-15 117.9 11.3 169 415-610 20-188 (263)
112 2xot_A Amphoterin-induced prot 99.2 4E-11 1.4E-15 123.9 11.8 152 412-570 37-199 (361)
113 3e6j_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 112.1 12.7 147 415-570 20-169 (229)
114 1dce_A Protein (RAB geranylger 99.2 4.9E-13 1.7E-17 145.9 -6.1 101 415-520 442-544 (567)
115 2v9t_B SLIT homolog 2 protein 99.2 1.3E-10 4.6E-15 110.7 11.5 102 194-305 58-161 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.1 4E-10 1.4E-14 107.3 14.3 128 414-543 32-164 (220)
117 2xot_A Amphoterin-induced prot 99.1 1.5E-10 5.1E-15 119.6 10.5 132 190-333 62-200 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.1 5.8E-10 2E-14 106.2 13.4 145 417-570 14-163 (220)
119 2ell_A Acidic leucine-rich nuc 99.1 8.8E-11 3E-15 106.8 6.2 120 455-578 42-164 (168)
120 2ell_A Acidic leucine-rich nuc 99.1 4.4E-10 1.5E-14 102.2 10.1 130 410-543 20-158 (168)
121 3sb4_A Hypothetical leucine ri 99.1 1.3E-09 4.4E-14 111.0 14.2 110 214-341 23-142 (329)
122 2je0_A Acidic leucine-rich nuc 99.0 2.8E-10 9.6E-15 101.2 7.4 80 212-303 60-147 (149)
123 2je0_A Acidic leucine-rich nuc 99.0 3.7E-10 1.3E-14 100.4 7.3 64 455-519 35-98 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.0 5.9E-10 2E-14 102.1 7.2 96 198-306 48-150 (176)
125 3sb4_A Hypothetical leucine ri 99.0 2.3E-09 7.9E-14 109.1 11.8 77 559-648 225-305 (329)
126 1w8a_A SLIT protein; signaling 98.9 3.6E-09 1.2E-13 98.4 11.3 125 380-520 10-137 (192)
127 2wfh_A SLIT homolog 2 protein 98.9 5.9E-09 2E-13 96.9 12.4 107 412-520 29-137 (193)
128 1a9n_A U2A', U2A'; complex (nu 98.9 1.4E-09 4.7E-14 99.7 6.8 125 414-543 19-151 (176)
129 4b8c_D Glucose-repressible alc 98.9 4.4E-10 1.5E-14 126.6 4.0 154 428-603 214-369 (727)
130 4b8c_D Glucose-repressible alc 98.9 1.9E-09 6.3E-14 121.5 6.8 117 187-316 219-336 (727)
131 1w8a_A SLIT protein; signaling 98.8 5.9E-09 2E-13 96.9 8.3 124 196-333 12-137 (192)
132 1ds9_A Outer arm dynein; leuci 98.8 2.9E-10 9.8E-15 106.5 -1.4 146 415-566 24-180 (198)
133 2wfh_A SLIT homolog 2 protein 98.8 1.4E-08 4.8E-13 94.3 10.1 120 197-333 15-137 (193)
134 2o6r_A Variable lymphocyte rec 98.8 3.2E-08 1.1E-12 90.6 12.4 104 414-519 28-134 (177)
135 1ds9_A Outer arm dynein; leuci 98.8 1E-10 3.6E-15 109.5 -5.1 109 211-333 43-151 (198)
136 2o6r_A Variable lymphocyte rec 98.8 5.3E-08 1.8E-12 89.1 12.0 123 416-543 9-135 (177)
137 3qfl_A MLA10; coiled-coil, (CC 98.7 1.4E-08 4.9E-13 84.3 4.9 79 12-90 2-82 (115)
138 4fdw_A Leucine rich hypothetic 98.7 1.8E-06 6.3E-11 89.6 21.9 255 214-543 111-381 (401)
139 4fdw_A Leucine rich hypothetic 98.7 9.2E-07 3.1E-11 91.9 19.3 211 415-650 158-380 (401)
140 2r9u_A Variable lymphocyte rec 98.6 8.4E-08 2.9E-12 87.3 9.1 100 417-520 15-116 (174)
141 4fs7_A Uncharacterized protein 98.6 2.8E-06 9.7E-11 88.5 21.8 80 434-518 293-375 (394)
142 3g39_A Variable lymphocyte rec 98.6 1.1E-07 3.7E-12 86.3 8.8 101 416-520 11-113 (170)
143 4fs7_A Uncharacterized protein 98.5 2E-06 6.7E-11 89.7 17.4 77 484-569 296-375 (394)
144 3g39_A Variable lymphocyte rec 98.5 5.3E-07 1.8E-11 81.6 10.0 102 380-496 11-113 (170)
145 2r9u_A Variable lymphocyte rec 98.5 5.9E-07 2E-11 81.6 10.0 102 380-496 14-116 (174)
146 3e4g_A ATP synthase subunit S, 98.2 5.8E-07 2E-11 80.3 4.1 86 486-575 62-154 (176)
147 2ifg_A High affinity nerve gro 98.2 4.2E-06 1.4E-10 85.5 9.5 82 414-495 31-113 (347)
148 4gt6_A Cell surface protein; l 98.2 0.00014 4.9E-09 75.5 21.1 105 433-543 260-368 (394)
149 2ra8_A Uncharacterized protein 98.1 2.7E-06 9.3E-11 86.7 7.4 83 434-518 135-228 (362)
150 2ra8_A Uncharacterized protein 98.1 5.6E-06 1.9E-10 84.4 9.1 14 212-225 135-148 (362)
151 4gt6_A Cell surface protein; l 98.1 0.0001 3.5E-09 76.6 18.7 103 433-542 283-388 (394)
152 3un9_A NLR family member X1; l 98.1 7.5E-07 2.6E-11 91.7 1.9 15 378-393 239-253 (372)
153 3e4g_A ATP synthase subunit S, 98.1 1.7E-06 5.9E-11 77.2 3.8 38 274-311 115-154 (176)
154 3un9_A NLR family member X1; l 98.1 4.2E-07 1.4E-11 93.5 -0.5 35 119-153 71-113 (372)
155 2ifg_A High affinity nerve gro 98.0 1.6E-05 5.5E-10 81.2 9.1 101 418-520 12-114 (347)
156 4h09_A Hypothetical leucine ri 97.9 0.0032 1.1E-07 64.8 24.2 21 555-577 305-325 (379)
157 4h09_A Hypothetical leucine ri 97.8 0.00065 2.2E-08 70.1 17.1 79 434-516 259-340 (379)
158 3rw6_A Nuclear RNA export fact 97.1 0.00064 2.2E-08 65.5 6.5 80 249-329 170-258 (267)
159 1io0_A Tropomodulin; LRR prote 97.0 0.00048 1.7E-08 62.8 4.7 61 414-474 36-105 (185)
160 3rw6_A Nuclear RNA export fact 96.9 0.00063 2.2E-08 65.5 4.6 107 188-303 137-258 (267)
161 1io0_A Tropomodulin; LRR prote 96.9 0.00067 2.3E-08 61.9 4.2 88 211-303 31-128 (185)
162 3rfe_A Platelet glycoprotein I 90.4 0.38 1.3E-05 40.4 5.4 52 466-520 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 90.1 0.18 6.1E-06 45.7 3.4 62 414-475 41-111 (197)
164 3rfe_A Platelet glycoprotein I 87.9 0.76 2.6E-05 38.5 5.5 37 591-628 29-66 (130)
165 1pgv_A TMD-1, tropomodulin TMD 78.8 1.5 5E-05 39.6 3.7 59 414-472 70-136 (197)
166 3pp5_A BRK1, protein brick1; t 31.9 1.4E+02 0.0049 21.5 7.4 46 8-53 24-69 (73)
167 3p8c_E Probable protein brick1 28.5 1.7E+02 0.0058 21.2 7.1 45 8-52 24-68 (75)
168 2akf_A Coronin-1A; coiled coil 24.0 1.1E+02 0.0036 17.4 4.0 24 34-57 4-27 (32)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-41 Score=387.73 Aligned_cols=529 Identities=16% Similarity=0.092 Sum_probs=353.8
Q ss_pred cccchHhHhhhhccCCCCCcccCCCCcccccc----hhcccceeeeccCCcccc---cc---cCCCCcceEEEEcCccce
Q 048062 85 QFQTEAFRRKLVLGNREPAAAHDQPSSSRTRT----KHLLALEKLVIEGCEELS---VS---ISSLPALCKFIIGGCKKV 154 (686)
Q Consensus 85 ~l~~~~~l~~l~i~~~~~~~~~~~~~~~~~~p----~~l~~L~~L~l~~c~~~~---~~---l~~l~~L~~L~l~~~~~~ 154 (686)
.+...++|++|+++++. .....| ..+++|++|++++|.... .. ++.+++|++|++++|...
T Consensus 121 ~l~~l~~L~~L~Ls~n~---------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 191 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNT---------LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191 (768)
T ss_dssp GGGGCTTCCEEECCSSE---------EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEE
T ss_pred HHhCCCCCCEEECcCCc---------cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccc
Confidence 56666788889988763 122222 346888999988886544 12 678888888888887755
Q ss_pred eEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccc
Q 048062 155 VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVA 234 (686)
Q Consensus 155 ~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~ 234 (686)
...+ +..+++|++|.+.+.... +..+ .+.++++|+.+++++|.+....+..+..+++|++|++++|.....+|.
T Consensus 192 ~~~~-~~~l~~L~~L~Ls~n~l~----~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 192 GDVD-VSRCVNLEFLDVSSNNFS----TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp SCCB-CTTCTTCCEEECCSSCCC----SCCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred ccCC-cccCCcCCEEECcCCcCC----CCCc-ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence 4332 366788888866554322 2222 377788888888888888776666778888888888888763333332
Q ss_pred hhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCC-CCccEEeccCCCCCccCCC-CCCCCCCcEEecccccccccc
Q 048062 235 EEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSL-SSLREIEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSL 312 (686)
Q Consensus 235 ~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l-~~L~~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l 312 (686)
. .+ ++|++|++++|.....+|..+... ++|++|++++|.....+|. ++.+++|++|++++|.....+
T Consensus 266 ~-------~l----~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 266 L-------PL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp C-------CC----TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred c-------cc----CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 1 22 666666666665434566655543 6666666666643223443 555666666666665433345
Q ss_pred chh-hhcccCCCccEEeEecCCCCcccccc-cC---------------------------CCcccEEeeccccCcccccc
Q 048062 313 PQA-WMCDNNSSLEILKIWDCHSLTYIAGV-QL---------------------------PPSLKRLEIYLCYNLRTLTV 363 (686)
Q Consensus 313 ~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~~---------------------------~~~L~~L~l~~c~~l~~l~~ 363 (686)
|.. +. .+++|++|++++|.....++.. .. +++|++|++++|.-...+|
T Consensus 335 p~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p- 411 (768)
T 3rgz_A 335 PMDTLL--KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP- 411 (768)
T ss_dssp CHHHHT--TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-
T ss_pred CHHHHh--cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-
Confidence 543 32 4556666666555321122211 11 3455555555543332333
Q ss_pred cccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCee
Q 048062 364 EEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETI 443 (686)
Q Consensus 364 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L 443 (686)
..+.. +++|+.|++++| .++. .+|..+..+ ++|++|++++|...+.+|..+..+++|++|
T Consensus 412 -~~l~~-------l~~L~~L~Ls~N-~l~~-----~~p~~l~~l------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 412 -PTLSN-------CSELVSLHLSFN-YLSG-----TIPSSLGSL------SKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp -GGGGG-------CTTCCEEECCSS-EEES-----CCCGGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred -HHHhc-------CCCCCEEECcCC-cccC-----cccHHHhcC------CCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 22222 456778887774 4443 234444333 689999999987777888888899999999
Q ss_pred eecccCCcccccccccCCCCCcEEEecCceee-ecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCC
Q 048062 444 AVSFCRNLKILPSGLHNLRQLQEIGIWECDLV-SFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVEL 522 (686)
Q Consensus 444 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l 522 (686)
++++|.....+|..+..+++|+.|++++|.+. .+|.....+++|+.|++++|.....+|..+..+++|+.|++++|+..
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 99998888788888888999999999999777 67777777889999999998766788888999999999999887643
Q ss_pred CCCCCC-----------------------------------------------------------------------CCC
Q 048062 523 PSLEED-----------------------------------------------------------------------GLP 531 (686)
Q Consensus 523 ~~~~~~-----------------------------------------------------------------------~~~ 531 (686)
..+|.. +.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 333311 123
Q ss_pred CCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccccccc
Q 048062 532 TNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS 611 (686)
Q Consensus 532 ~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 611 (686)
++|+.|++++|. +.+.+|. .+..+++|+.|+++++.--..+|..++ .+++|++|+++++.--..+|.
T Consensus 632 ~~L~~LdLs~N~-l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~~l~---------~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 632 GSMMFLDMSYNM-LSGYIPK---EIGSMPYLFILNLGHNDISGSIPDEVG---------DLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp BCCCEEECCSSC-CBSCCCG---GGGGCTTCCEEECCSSCCCSCCCGGGG---------GCTTCCEEECCSSCCEECCCG
T ss_pred ccccEEECcCCc-ccccCCH---HHhccccCCEEeCcCCccCCCCChHHh---------CCCCCCEEECCCCcccCcCCh
Confidence 578899999998 7667776 788999999999999644447887774 778999999999655558899
Q ss_pred ccCCCCCcCEEeecCCCCCCcCCCCCCcCccceeeecCChhHH----HHhhcCCCCCccccCCcceEE
Q 048062 612 SIVDLQYLTSLYLLECPKLKYFPEKGLPSSLLLLIIWECPLIV----EKCRKDGGQYWDLLTHIPRVE 675 (686)
Q Consensus 612 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~i~~i~~~~ 675 (686)
.+..+++|++|++++|+--..+|..+.+.++....+.|||.|- ..|....+++|++++|+|+++
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred HHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 9999999999999998777789988777888888888876432 268889999999999999864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.9e-38 Score=359.64 Aligned_cols=452 Identities=18% Similarity=0.153 Sum_probs=288.7
Q ss_pred cchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccc-cccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc
Q 048062 189 PKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQ-SLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ 267 (686)
Q Consensus 189 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~ 267 (686)
..+++|+.+++++|.+....+. ++.+++|++|++++|. ++ .+|.. +..+ ++|++|++++|.....+|.
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~-----l~~l----~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRA-----ISTC----TELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHH-----TTTC----SSCCEEECCSSCCEESCCC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc-CCCcccHH-----HhcC----CCCCEEECCCCcccCccCc
Confidence 4556666666666666554444 5666666666666664 33 22222 4444 6666666666654334443
Q ss_pred cccCCCCccEEeccCCCCCccCCC-CCC-CCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cC
Q 048062 268 SSLSLSSLREIEIYKCSSLVSFPE-VAL-PSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QL 343 (686)
Q Consensus 268 ~~~~l~~L~~L~l~~~~~l~~lp~-~~~-l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~ 343 (686)
. .+++|++|++++|.....+|. +.. +++|++|++++|.....+|..+. .+++|++|++++|.....++.. ..
T Consensus 266 ~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~ip~~~l~~ 341 (768)
T 3rgz_A 266 L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGELPMDTLLK 341 (768)
T ss_dssp C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh--cCCCccEEECCCCcccCcCCHHHHhc
Confidence 2 566666666666653334554 333 36777777777654445555555 5677777777766533244432 45
Q ss_pred CCcccEEeeccccCcccccccccccccccccccCC-CccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEec
Q 048062 344 PPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASS-LLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVG 422 (686)
Q Consensus 344 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 422 (686)
+++|++|++++|.-...+| ..+.. .+ +|+.|++++| .++...+ ..+. ....++|++|+++
T Consensus 342 l~~L~~L~Ls~n~l~~~~p--~~l~~-------l~~~L~~L~Ls~N-~l~~~~~-----~~~~----~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELP--ESLTN-------LSASLLTLDLSSN-NFSGPIL-----PNLC----QNPKNTLQELYLQ 402 (768)
T ss_dssp CTTCCEEECCSSEEEECCC--TTHHH-------HTTTCSEEECCSS-EEEEECC-----TTTT----CSTTCCCCEEECC
T ss_pred CCCCCEEeCcCCccCcccc--HHHHh-------hhcCCcEEEccCC-CcCCCcC-----hhhh----hcccCCccEEECC
Confidence 6677777777654333444 22221 22 4777777763 3332111 1110 0112678888888
Q ss_pred CCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceee-ecCCCCCCCCCccEEeeccccccccc
Q 048062 423 GCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLV-SFPQGGLPCAKLMRLEISYCKRLQVL 501 (686)
Q Consensus 423 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~l 501 (686)
+|...+.+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.+. .+|.....+++|+.|++++|.....+
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 87666677888888888999998888777778888888888888988888776 66766677788888988887666678
Q ss_pred cccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCc
Q 048062 502 PKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKA 580 (686)
Q Consensus 502 ~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~ 580 (686)
|..+..+++|++|++++|.....+|.. +.+++|++|++++|. +.+.+|. .+..+++|+.|++++|+-...+|...
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~---~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS-FSGNIPA---ELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CEEECCG---GGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc-ccCcCCH---HHcCCCCCCEEECCCCccCCcCChHH
Confidence 888888888999998887655455543 456788888888887 5556665 67888888888888864333455433
Q ss_pred CCCC-------------------------------------------------------------CCCCCCCccccceee
Q 048062 581 DDKG-------------------------------------------------------------SGTTLPLPASLTTLW 599 (686)
Q Consensus 581 ~~~~-------------------------------------------------------------~~~~~~~~~~L~~L~ 599 (686)
+... ........++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 2100 001122346788888
Q ss_pred ccccccccccccccCCCCCcCEEeecCCCCCCcCCCC-CCcCccceeeecCChhHHHHhhcCCCCCccccCCcceEEecc
Q 048062 600 IFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEK-GLPSSLLLLIIWECPLIVEKCRKDGGQYWDLLTHIPRVEIDG 678 (686)
Q Consensus 600 l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~ 678 (686)
++++.--..+|..+..+++|+.|++++|.--..+|.. +-+++|+.|++++|..- ..-.+.+..++.+.++++.+
T Consensus 639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-----GRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-----ECCCGGGGGCCCCSEEECCS
T ss_pred CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-----CcCChHHhCCCCCCEEECcC
Confidence 8885544577888888888888888886555567653 34678888888887532 11233566677777777777
Q ss_pred eeecc
Q 048062 679 KSVFG 683 (686)
Q Consensus 679 ~~~~~ 683 (686)
+..+|
T Consensus 714 N~l~g 718 (768)
T 3rgz_A 714 NNLSG 718 (768)
T ss_dssp SEEEE
T ss_pred Ccccc
Confidence 66543
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.6e-34 Score=321.53 Aligned_cols=490 Identities=16% Similarity=0.123 Sum_probs=349.6
Q ss_pred cccchhc-ccceeeeccCCcccc---cccCCCCcceEEEEcCccceeE-ccccccCCCcceeecccCcchhhccCCCCCC
Q 048062 113 RTRTKHL-LALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLAGPLKPQ 187 (686)
Q Consensus 113 ~~~p~~l-~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 187 (686)
..+|..+ +++++|+++++.... ..++.+++|++|++++|..... +..+..+++|++|.+.+..-... .+..
T Consensus 25 ~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~ 100 (606)
T 3t6q_A 25 NEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM----AETA 100 (606)
T ss_dssp SSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE----CTTT
T ss_pred ccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc----Chhh
Confidence 4455544 468999998876544 4678899999999999887775 45688889999997766543322 3347
Q ss_pred ccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc
Q 048062 188 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ 267 (686)
Q Consensus 188 l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~ 267 (686)
|.++++|+.+++++|.+..+.+..++.+++|++|++++|. +..++... +..+ ++|++|++++|......|.
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPK----GFPT----EKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCT----TCCC----TTCCEEECCSSCCCEECHH
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCccc----ccCC----cccCEEEcccCcccccChh
Confidence 8888999999999999988877778889999999999886 66653221 2224 8899999999865334466
Q ss_pred cccCCCCcc--EEeccCCCCCccC-CCCCCCCCCcEEeccccccccccchhhh------------------------ccc
Q 048062 268 SSLSLSSLR--EIEIYKCSSLVSF-PEVALPSKLKKIQIRECDALKSLPQAWM------------------------CDN 320 (686)
Q Consensus 268 ~~~~l~~L~--~L~l~~~~~l~~l-p~~~~l~~L~~L~l~~~~~l~~l~~~~~------------------------~~~ 320 (686)
.++.+++|+ .|++++|. +..+ |......+|+.|+++++..+........ ...
T Consensus 172 ~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~ 250 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250 (606)
T ss_dssp HHHTTTTCCSEEEECTTCC-CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred hhhhhcccceeEEecCCCc-cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence 788888888 88888886 4444 4455567888888887652211111000 001
Q ss_pred C--CCccEEeEecCCCCcccccc--cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCcccccccc
Q 048062 321 N--SSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFS 396 (686)
Q Consensus 321 l--~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 396 (686)
+ .+|+.|+++++. ++.++.. ..+++|++|+++++ .++.+| ..+.. +++|++|++++| .++. .+
T Consensus 251 l~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp--~~l~~-------l~~L~~L~l~~n-~l~~-~~ 317 (606)
T 3t6q_A 251 LCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTAT-HLSELP--SGLVG-------LSTLKKLVLSAN-KFEN-LC 317 (606)
T ss_dssp GGGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTS-CCSCCC--SSCCS-------CTTCCEEECTTC-CCSB-GG
T ss_pred hhcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCC-ccCCCC--hhhcc-------cccCCEEECccC-CcCc-Cc
Confidence 1 268888888864 6666553 56789999999986 466776 44443 567999999984 5555 22
Q ss_pred CCCchhhhhhhhccCCCCCCceEEecCCCCccchHH-hhcCCCCCCeeeecccCCcccc--cccccCCCCCcEEEecCce
Q 048062 397 KNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAE-RLDNNTSLETIAVSFCRNLKIL--PSGLHNLRQLQEIGIWECD 473 (686)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~ 473 (686)
|..+ +.+ ++|++|++++|.....++. .+..+++|++|++++|...... +..+..+++|++|++++|.
T Consensus 318 ----~~~~-----~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 318 ----QISA-----SNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp ----GGCG-----GGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred ----hhhh-----hcc-CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc
Confidence 2232 233 7899999999876655544 4788999999999998776554 6678889999999999998
Q ss_pred eeecC-CCCCCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCC-CCCCCCCceeeccCCcchhhhhh
Q 048062 474 LVSFP-QGGLPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEE-DGLPTNLHSLEINSNKEIWKSMI 550 (686)
Q Consensus 474 l~~l~-~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~ 550 (686)
+..++ .....+++|+.|++++|......+. .+..+++|++|++++|......+. ...+++|++|++++|. +.+...
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 466 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNI 466 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEE
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCcccc
Confidence 77664 4566778999999999654444443 488899999999999754333332 2457899999999998 443211
Q ss_pred hcccccCCCCCccEEEeccCCCceEc-CCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCC
Q 048062 551 ERGRGFHRFSSLRQLTIINCDDVVSF-PLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPK 629 (686)
Q Consensus 551 ~~~~~l~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~ 629 (686)
.....+..+++|+.|++++| .++.+ |..+ ..+++|++|+++++.--...|..+..+++| .|++++| +
T Consensus 467 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~ 534 (606)
T 3t6q_A 467 QKTNSLQTLGRLEILVLSFC-DLSSIDQHAF---------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-H 534 (606)
T ss_dssp CSSCGGGGCTTCCEEECTTS-CCCEECTTTT---------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-C
T ss_pred ccchhhccCCCccEEECCCC-ccCccChhhh---------ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-c
Confidence 11125788999999999996 55555 4444 367899999999964444556678889999 9999996 5
Q ss_pred CCcCCCCCC--cCccceeeecCChh
Q 048062 630 LKYFPEKGL--PSSLLLLIIWECPL 652 (686)
Q Consensus 630 l~~l~~~~~--~~~L~~L~i~~c~~ 652 (686)
+..++...+ +++|+.|++++||-
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ccccCHhhcccCCCCCEEeCCCCCc
Confidence 666665432 67899999999873
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.6e-34 Score=316.88 Aligned_cols=480 Identities=15% Similarity=0.051 Sum_probs=325.7
Q ss_pred cccchh-cccceeeeccCCcccc---cccCCCCcceEEEEcCccceeEc-cccccCCCcceeecccCcchhhccCCCCCC
Q 048062 113 RTRTKH-LLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQ 187 (686)
Q Consensus 113 ~~~p~~-l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 187 (686)
..+|.. .+++++|+++++.... ..++.+++|++|++++|.....+ ..+..+++|++|.+.+.... +..+..
T Consensus 24 ~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~ 99 (606)
T 3vq2_A 24 SKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ----SFSPGS 99 (606)
T ss_dssp SSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC----CCCTTS
T ss_pred ccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc----ccChhh
Confidence 344543 3678888888776444 35778888888888888776653 45677788888866554322 223446
Q ss_pred ccchhhhhhchhhhhhhhcccchhhhcCcCccEeeccccccccc--ccchhhHHHHHHhhhcCCCccEEEccCCCCCccc
Q 048062 188 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQS--LVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL 265 (686)
Q Consensus 188 l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 265 (686)
|.++++|+.+++++|.+...++..++.+++|++|++++|. +.. +|.. ++.+ ++|++|++++|......
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-----~~~l----~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-----FSNL----TNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-----GGTC----TTCCEEECCSSCCCEEC
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-----Hhhc----CCCCEEEccCCcceecC
Confidence 7777778888888887777776667778888888887775 543 4444 6666 77888888877543333
Q ss_pred cccccCCCCcc----EEeccCCCCCccCCC-CCCCCCCcEEeccccccc-cccchhhhcccCCCccEEeEe---------
Q 048062 266 PQSSLSLSSLR----EIEIYKCSSLVSFPE-VALPSKLKKIQIRECDAL-KSLPQAWMCDNNSSLEILKIW--------- 330 (686)
Q Consensus 266 p~~~~~l~~L~----~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~l~~L~~L~l~--------- 330 (686)
|..++.+++|+ +|++++|. ++.++. .....+|+.|+++++... ...+..+. +++.|+.+.+.
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ--NLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHH--TTTTCEEEEEEEECCTTSCC
T ss_pred hhhhhhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCccchhHHHHHhc--cccccccccccccccccCCc
Confidence 44455444443 67777775 555554 333447777777775322 12222222 34444444432
Q ss_pred -----------------------cCCCCcc-cccccCCCcccEEeeccccCcccccccccccccccccccCCCccEEecc
Q 048062 331 -----------------------DCHSLTY-IAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEIS 386 (686)
Q Consensus 331 -----------------------~~~~l~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 386 (686)
.+..+.. ++....+++|+.|+++++. +..++.... +++|+.|+++
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~l~~----------~~~L~~L~l~ 315 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPK----------HFKWQSLSII 315 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCCCCCT----------TCCCSEEEEE
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhhhccc----------cccCCEEEcc
Confidence 2222222 2223456778888887754 444542122 4468889888
Q ss_pred CCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccc--ccccccCCCCC
Q 048062 387 GCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKI--LPSGLHNLRQL 464 (686)
Q Consensus 387 ~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L 464 (686)
+|. +.. +| . . .+ ++|++|++++|.....+ .+..+++|++|++++|..... ++..+..+++|
T Consensus 316 ~n~-l~~-lp-----~------~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 316 RCQ-LKQ-FP-----T------L-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp SCC-CSS-CC-----C------C-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred ccc-Ccc-cc-----c------C-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 853 344 33 1 1 22 78999999998666655 467899999999998865443 36677889999
Q ss_pred cEEEecCceeeecCCCCCCCCCccEEeecccccccccc-ccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCC
Q 048062 465 QEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLP-KGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSN 542 (686)
Q Consensus 465 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~ 542 (686)
++|++++|.+..+|.....+++|+.|++++|......| ..+..+++|++|++++|......+.. +.+++|++|++++|
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 99999999888888877888899999999975555555 47889999999999997644444432 45789999999999
Q ss_pred cchhhh-hhhcccccCCCCCccEEEeccCCCceEc-CCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcC
Q 048062 543 KEIWKS-MIERGRGFHRFSSLRQLTIINCDDVVSF-PLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLT 620 (686)
Q Consensus 543 ~~l~~~-~~~~~~~l~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~ 620 (686)
. +.+. ++. .+..+++|+.|++++| .++.+ +..+ ..+++|++|++++|.-....|..+..+++|+
T Consensus 459 ~-l~~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 459 S-FKDNTLSN---VFANTTNLTFLDLSKC-QLEQISWGVF---------DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp E-EGGGEECS---CCTTCTTCCEEECTTS-CCCEECTTTT---------TTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred c-CCCcchHH---hhccCCCCCEEECCCC-cCCccChhhh---------cccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 8 5533 444 7889999999999996 55554 4444 3678999999999644444477888999999
Q ss_pred EEeecCCCCCCcCCCC--CCcCccceeeecCChh
Q 048062 621 SLYLLECPKLKYFPEK--GLPSSLLLLIIWECPL 652 (686)
Q Consensus 621 ~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~c~~ 652 (686)
+|++++| +++.+|.. .++.+|+.|++++||-
T Consensus 525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred EEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 9999997 48888875 2344799999988763
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.1e-33 Score=313.63 Aligned_cols=492 Identities=15% Similarity=0.087 Sum_probs=301.9
Q ss_pred cccceeeeccCCcccc---cccCCCCcceEEEEcCccceeEc-cccccCCCcceeecccCcchhhccCCCCCCccchhhh
Q 048062 119 LLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEEL 194 (686)
Q Consensus 119 l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L 194 (686)
+++|++|++++|.... ..++.+++|++|++++|.....+ ..+..+++|++|.+.+... .+..+..+.++++|
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL----SSTKLGTQVQLENL 147 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC----SCCCCCSSSCCTTC
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc----cccCchhhcccccC
Confidence 3455555555543222 12455555555555555444433 2344555555554433321 11222244455555
Q ss_pred hhchhhhhhhhcccchhhh--cCcCccEeecccccccccccchhhHHHHHHhhh-----------------------cCC
Q 048062 195 ILSTKEQTYIWKSHDGLLQ--DICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCE-----------------------LSC 249 (686)
Q Consensus 195 ~~l~l~~n~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~-----------------------~~~ 249 (686)
+.+++++|.+...++..+. .+++|++|++++|. ++.++... +..+.. ..+
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGC----FHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTG----GGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhh----hhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 5555555555554444332 23555555555553 33333211 111100 114
Q ss_pred CccEEEccCCCCCccccccccCCCC--ccEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCcc
Q 048062 250 RLEYLALSGCEGLVKLPQSSLSLSS--LREIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLE 325 (686)
Q Consensus 250 ~L~~L~l~~~~~l~~~p~~~~~l~~--L~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 325 (686)
+|+.|++++|......|.++..++. |++|++++|. +..+++ ++.+++|++|+++++......+..+. .+++|+
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~ 299 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH--GLFNVR 299 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT--TCTTCC
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhhc--CCCCcc
Confidence 5555666655443333444554433 7777777764 444332 55667777777777543333333443 567777
Q ss_pred EEeEecCCCCc-----ccc-----cccCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCc-ccccc
Q 048062 326 ILKIWDCHSLT-----YIA-----GVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCL-SLTCI 394 (686)
Q Consensus 326 ~L~l~~~~~l~-----~~~-----~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~ 394 (686)
+|+++++..-. .++ ....+++|++|+++++. +..++. ..+. .+++|++|++++|. .+..
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~-------~l~~L~~L~Ls~n~~~~~~- 369 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-NMFT-------GLINLKYLSLSNSFTSLRT- 369 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-TTTT-------TCTTCCEEECTTCBSCCCE-
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-hHhc-------cccCCcEEECCCCchhhhh-
Confidence 77776543111 111 11345677777777653 333320 1121 14468888887753 1222
Q ss_pred ccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccc-ccccCCCCCcEEEecCce
Q 048062 395 FSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWECD 473 (686)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 473 (686)
++...+. .+ . .++|+.|++++|...+..|..+..+++|+.|++++|.....+| ..+..+++|++|++++|.
T Consensus 370 l~~~~f~----~~---~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 370 LTNETFV----SL---A-HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp ECTTTTG----GG---T-TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred cchhhhc----cc---c-cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 2211111 00 0 1579999999987666667888999999999999998776665 578889999999999998
Q ss_pred eeecCC-CCCCCCCccEEeeccccc--cccccccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhh
Q 048062 474 LVSFPQ-GGLPCAKLMRLEISYCKR--LQVLPKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKS 548 (686)
Q Consensus 474 l~~l~~-~~~~~~~L~~L~l~~~~~--l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~ 548 (686)
+..++. .+..+++|+.|++.+|.. +..+|..+..+++|+.|++++| .++.++.. ..+++|++|++++|. ++..
T Consensus 442 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~ 519 (680)
T 1ziw_A 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNN-LARL 519 (680)
T ss_dssp EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CGGG
T ss_pred cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCC-cccc
Confidence 887655 555678999999998643 3567888999999999999996 46666654 457899999999998 5522
Q ss_pred hhh-----cccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccc-cCCCCCcCEE
Q 048062 549 MIE-----RGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS-IVDLQYLTSL 622 (686)
Q Consensus 549 ~~~-----~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~l~~L~~L 622 (686)
... ....+..+++|+.|+++++ .++.+|... ...+++|++|++++ +.++.+|.. +..+++|+.|
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV--------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred chhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH--------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEE
Confidence 111 0013688999999999994 777887642 13678999999988 789999875 4688999999
Q ss_pred eecCCCCCCcCCCCC---CcCccceeeecCChhH
Q 048062 623 YLLECPKLKYFPEKG---LPSSLLLLIIWECPLI 653 (686)
Q Consensus 623 ~i~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l 653 (686)
++++| +++.++... .+++|+.|++++||-.
T Consensus 590 ~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 590 NLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp ECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred ECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 99996 788877643 3579999999998743
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-33 Score=314.59 Aligned_cols=481 Identities=16% Similarity=0.124 Sum_probs=359.1
Q ss_pred HhHhhhhccCCCCCcccCCCCcccccchhcccceeeeccCCcccc---cccCCCCcceEEEEcCccceeE-ccccccCCC
Q 048062 90 AFRRKLVLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVW-RSATDHLGS 165 (686)
Q Consensus 90 ~~l~~l~i~~~~~~~~~~~~~~~~~~p~~l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~ 165 (686)
+.+++|+++++.... ........+++|++|++++|.... ..++.+++|++|++++|..... +..+..+++
T Consensus 32 ~~l~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI------LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCE------eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 678888888874211 111112247899999999986544 4688999999999999998776 667899999
Q ss_pred cceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhccc-chhhhcCcCccEeecccccccccccchhhHHHHHHh
Q 048062 166 QNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSH-DGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQL 244 (686)
Q Consensus 166 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l 244 (686)
|++|.+.++...... +..+.++.+|+.+++++|.+.... +..++.+++|++|++++|. ++.++... ++.+
T Consensus 106 L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~----~~~l 176 (606)
T 3vq2_A 106 LENLVAVETKLASLE----SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVND----LQFL 176 (606)
T ss_dssp CCEEECTTSCCCCSS----SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTT----THHH
T ss_pred CCEEEccCCcccccc----ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhh----hhhh
Confidence 999977665443332 236889999999999999998643 5668999999999999986 77776532 5555
Q ss_pred hhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCcc-CCC-CCCCCCCcEEe--------------------
Q 048062 245 CELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVS-FPE-VALPSKLKKIQ-------------------- 302 (686)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~-lp~-~~~l~~L~~L~-------------------- 302 (686)
......+.+|++++|.. ..+|.......+|++|++++|..... +|. ++.++.|+.++
T Consensus 177 ~~L~~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hccccccceeeccCCCc-ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 22222356899999864 77777666666899999998853211 111 33344444433
Q ss_pred ------------ccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCccccccccccccc
Q 048062 303 ------------IRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCS 370 (686)
Q Consensus 303 ------------l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~ 370 (686)
+.....+......+ ..+++|+.|+++++. +..++....+++|++|++++|.. ..+|..
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~------ 325 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPTL------ 325 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCCC------
T ss_pred hhhhhccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-cccccC------
Confidence 32333333322223 368999999999976 67777667788999999999865 777622
Q ss_pred ccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccc--hHHhhcCCCCCCeeeeccc
Q 048062 371 SSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLES--IAERLDNNTSLETIAVSFC 448 (686)
Q Consensus 371 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--l~~~l~~l~~L~~L~l~~~ 448 (686)
.+++|+.|++++|..+.. ++ .+.+ ++|++|++++|..... ++..+..+++|++|++++|
T Consensus 326 -----~l~~L~~L~l~~n~~~~~-~~------------~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 326 -----DLPFLKSLTLTMNKGSIS-FK------------KVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp -----CCSSCCEEEEESCSSCEE-CC------------CCCC-TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred -----CCCccceeeccCCcCccc-hh------------hccC-CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 255799999999765555 33 3444 7999999999754332 3778899999999999998
Q ss_pred CCcccccccccCCCCCcEEEecCceeeecCC--CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCC-C
Q 048062 449 RNLKILPSGLHNLRQLQEIGIWECDLVSFPQ--GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPS-L 525 (686)
Q Consensus 449 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~-~ 525 (686)
. +..+|..+..+++|+.|++++|.+..++. ....+++|+.|++++|......|..+..+++|++|++++|..... +
T Consensus 387 ~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 387 G-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp S-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred c-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch
Confidence 7 44567888999999999999998887654 566788999999999877677788899999999999999764432 3
Q ss_pred CC-CCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceE-cCCCcCCCCCCCCCCCccccceeecccc
Q 048062 526 EE-DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVS-FPLKADDKGSGTTLPLPASLTTLWIFNF 603 (686)
Q Consensus 526 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 603 (686)
+. .+.+++|++|++++|. +++..+. .+..+++|++|++++| .+.. .|..+ ..+++|++|++++
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~---------~~l~~L~~L~l~~- 530 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQ-LEQISWG---VFDTLHRLQLLNMSHN-NLLFLDSSHY---------NQLYSLSTLDCSF- 530 (606)
T ss_dssp CSCCTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSS-CCSCEEGGGT---------TTCTTCCEEECTT-
T ss_pred HHhhccCCCCCEEECCCCc-CCccChh---hhcccccCCEEECCCC-cCCCcCHHHc---------cCCCcCCEEECCC-
Confidence 33 2567899999999997 6644444 6889999999999997 4544 46555 3678999999999
Q ss_pred ccccccccccCCCC-CcCEEeecCCCCCC
Q 048062 604 PNLERLSSSIVDLQ-YLTSLYLLECPKLK 631 (686)
Q Consensus 604 ~~L~~l~~~~~~l~-~L~~L~i~~c~~l~ 631 (686)
+.++.+|..+..++ +|+.|++++++-.-
T Consensus 531 N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 531 NRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 56999998888887 59999999986543
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.9e-33 Score=314.22 Aligned_cols=516 Identities=15% Similarity=0.101 Sum_probs=332.8
Q ss_pred HhHhhhhccCCCCCcccCCCCcccccchhcccceeeeccCCcccc---cccCCCCcceEEEEcCccceeEcc-ccccCCC
Q 048062 90 AFRRKLVLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVWRS-ATDHLGS 165 (686)
Q Consensus 90 ~~l~~l~i~~~~~~~~~~~~~~~~~~p~~l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~ 165 (686)
.+++.|+++++.... ........+++|++|++++|.... ..++.+++|++|++++|.....+. .+..+++
T Consensus 25 ~~l~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR------LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSCCCC------CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCCCCC------cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 577888888774211 111112346889999998876443 346778999999999988777766 4788899
Q ss_pred cceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhh
Q 048062 166 QNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLC 245 (686)
Q Consensus 166 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~ 245 (686)
|++|.+.+.... +..+..|.++++|+.+++++|.+...++..+..+++|++|++++|. ++.++... +..+
T Consensus 99 L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~~- 168 (680)
T 1ziw_A 99 LTELHLMSNSIQ----KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEE----LDIF- 168 (680)
T ss_dssp CSEEECCSSCCC----CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHH----HGGG-
T ss_pred CCEEECCCCccC----ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHH----hhcc-
Confidence 999977665432 2333468888999999999999888887778889999999999885 66665531 2211
Q ss_pred hcCCCccEEEccCCCCCccccccccCCC---------------------------CccEEeccCCCCCccCCC--CCCC-
Q 048062 246 ELSCRLEYLALSGCEGLVKLPQSSLSLS---------------------------SLREIEIYKCSSLVSFPE--VALP- 295 (686)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~p~~~~~l~---------------------------~L~~L~l~~~~~l~~lp~--~~~l- 295 (686)
..++|++|++++|......|..+..++ +|+.|++++|. +...++ +..+
T Consensus 169 -~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 169 -ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLK 246 (680)
T ss_dssp -TTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGG
T ss_pred -ccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhhccC
Confidence 127899999999865333444454444 44555555553 332221 2333
Q ss_pred -CCCcEEeccccccccccc-hhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEeeccccCcc-----ccccccc
Q 048062 296 -SKLKKIQIRECDALKSLP-QAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYLCYNLR-----TLTVEEG 366 (686)
Q Consensus 296 -~~L~~L~l~~~~~l~~l~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~-----~l~~~~~ 366 (686)
++|+.|++++|. +..++ ..+. .+++|++|+++++. +..++.. ..+++|+.|+++++..-. .+|.
T Consensus 247 ~~~L~~L~Ls~n~-l~~~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~--- 319 (680)
T 1ziw_A 247 WTNLTMLDLSYNN-LNVVGNDSFA--WLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK--- 319 (680)
T ss_dssp GSCCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCE---
T ss_pred cCCCCEEECCCCC-cCccCccccc--CcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccc---
Confidence 337777777753 33333 3333 56777777777664 3333222 456677777776543211 1110
Q ss_pred ccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCC-ccchHH-hhc--CCCCCCe
Q 048062 367 IQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSK-LESIAE-RLD--NNTSLET 442 (686)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~-~~~l~~-~l~--~l~~L~~ 442 (686)
+.. .....+++|++|++++ +.++. .+ +..+ ..+ ++|++|++++|.. ...++. .+. ..++|+.
T Consensus 320 i~~--~~~~~l~~L~~L~l~~-n~l~~-~~----~~~~-----~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 320 IDD--FSFQWLKCLEHLNMED-NDIPG-IK----SNMF-----TGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp ECT--TTTTTCTTCCEEECCS-CCBCC-CC----TTTT-----TTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred cCh--hhcccCCCCCEEECCC-CccCC-CC----hhHh-----ccc-cCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 000 0011244577777777 34444 22 1222 222 5788888877642 222221 122 2357888
Q ss_pred eeecccCCcccccccccCCCCCcEEEecCceee-ecCC-CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCC
Q 048062 443 IAVSFCRNLKILPSGLHNLRQLQEIGIWECDLV-SFPQ-GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 443 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 520 (686)
|++++|......|..+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 888887776666777888888999999888775 4553 45566789999998876444455677888899999998864
Q ss_pred C--CCCCCC-CCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccce
Q 048062 521 E--LPSLEE-DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTT 597 (686)
Q Consensus 521 ~--l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~ 597 (686)
. +..+|. ...+++|++|++++|. ++ .++. ..+..+++|+.|+++++ .+..++......+.......+++|++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~-~i~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNN-IA-NIND--DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSC-CC-CCCT--TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccCCcccccCCCCCEEECCCCC-CC-cCCh--hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCE
Confidence 2 233333 2456799999999997 66 3333 36788999999999994 56655432110111112245689999
Q ss_pred eecccccccccccc-ccCCCCCcCEEeecCCCCCCcCCCCCC--cCccceeeecCCh
Q 048062 598 LWIFNFPNLERLSS-SIVDLQYLTSLYLLECPKLKYFPEKGL--PSSLLLLIIWECP 651 (686)
Q Consensus 598 L~l~~~~~L~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 651 (686)
|++++ +.++.+|. .+..+++|+.|++++ ++++.+|...+ +++|+.|++++|.
T Consensus 541 L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 541 LNLES-NGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp EECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCC-CCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 99999 68889986 478899999999988 57889987643 6899999999983
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-31 Score=299.00 Aligned_cols=480 Identities=12% Similarity=0.065 Sum_probs=334.4
Q ss_pred CCcceEEEEcCccceeE-ccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCc
Q 048062 140 LPALCKFIIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL 218 (686)
Q Consensus 140 l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L 218 (686)
.+.+++|++++|..... +..+..+++|++|.+.+..... ..+..|.++++|+.+++++|.+....+..++.+++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce----eChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 34899999999998887 4568889999999776654332 233478888899999999999888888788889999
Q ss_pred cEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccc--cccccCCCCccEEeccCCCCCccCCC--CCC
Q 048062 219 KSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL--PQSSLSLSSLREIEIYKCSSLVSFPE--VAL 294 (686)
Q Consensus 219 ~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~--p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~ 294 (686)
++|++++|. ++.++... +..+ ++|++|++++|.. ..+ |. +..+++|++|++++|. ++.++. ++.
T Consensus 108 ~~L~L~~n~-i~~l~~~~----~~~l----~~L~~L~L~~n~l-~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 175 (606)
T 3t6q_A 108 KHLFFIQTG-ISSIDFIP----LHNQ----KTLESLYLGSNHI-SSIKLPK-GFPTEKLKVLDFQNNA-IHYLSKEDMSS 175 (606)
T ss_dssp CEEECTTSC-CSCGGGSC----CTTC----TTCCEEECCSSCC-CCCCCCT-TCCCTTCCEEECCSSC-CCEECHHHHHT
T ss_pred cEeeccccC-cccCCcch----hccC----CcccEEECCCCcc-cccCccc-ccCCcccCEEEcccCc-ccccChhhhhh
Confidence 999998885 77764322 5566 8899999998865 443 44 3448899999998885 555543 667
Q ss_pred CCCCc--EEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc---------------------------c--C
Q 048062 295 PSKLK--KIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV---------------------------Q--L 343 (686)
Q Consensus 295 l~~L~--~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---------------------------~--~ 343 (686)
+++|+ .|+++++. +..++.... ...+|++|++.+|..+...... . .
T Consensus 176 l~~L~~l~L~l~~n~-l~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 176 LQQATNLSLNLNGND-IAGIEPGAF--DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTTCCSEEEECTTCC-CCEECTTTT--TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hcccceeEEecCCCc-cCccChhHh--hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 88888 78888864 444443332 2467888888776522111000 0 0
Q ss_pred CCcccEEeeccccCccccccccc-ccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEec
Q 048062 344 PPSLKRLEIYLCYNLRTLTVEEG-IQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVG 422 (686)
Q Consensus 344 ~~~L~~L~l~~c~~l~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 422 (686)
..+|+.|+++++ .+..++ .. +. .+++|+.|+++++ .++. +| ..+ +.+ ++|++|+++
T Consensus 253 ~~~L~~L~l~~n-~l~~~~--~~~~~-------~l~~L~~L~l~~n-~l~~-lp-----~~l-----~~l-~~L~~L~l~ 309 (606)
T 3t6q_A 253 EMSVESINLQKH-YFFNIS--SNTFH-------CFSGLQELDLTAT-HLSE-LP-----SGL-----VGL-STLKKLVLS 309 (606)
T ss_dssp GSEEEEEECTTC-CCSSCC--TTTTT-------TCTTCSEEECTTS-CCSC-CC-----SSC-----CSC-TTCCEEECT
T ss_pred cCceeEEEeecC-ccCccC--HHHhc-------cccCCCEEeccCC-ccCC-CC-----hhh-----ccc-ccCCEEECc
Confidence 126777777774 344444 22 22 1456999999884 5554 33 332 233 689999999
Q ss_pred CCCCccchHHhhcCCCCCCeeeecccCCcccccc-cccCCCCCcEEEecCceeeec---CCCCCCCCCccEEeecccccc
Q 048062 423 GCSKLESIAERLDNNTSLETIAVSFCRNLKILPS-GLHNLRQLQEIGIWECDLVSF---PQGGLPCAKLMRLEISYCKRL 498 (686)
Q Consensus 423 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~l---~~~~~~~~~L~~L~l~~~~~l 498 (686)
+|......|..+..+++|++|++++|.....++. .+..+++|++|++++|.+..+ +.....+++|+.|++++|...
T Consensus 310 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp TCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred cCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence 9765555577788999999999999887756554 478899999999999977755 556677789999999987555
Q ss_pred ccccccccCCCCCCeEEecCCCCCCCCCC--CCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceE-
Q 048062 499 QVLPKGLHNLTSLQQLRIGKGVELPSLEE--DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVS- 575 (686)
Q Consensus 499 ~~l~~~l~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~- 575 (686)
...|..+..+++|++|++++|......+. ...+++|++|++++|. +....+. .+..+++|++|++++|. +..
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~L~~n~-l~~~ 464 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQ---LFDGLPALQHLNLQGNH-FPKG 464 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTT---TTTTCTTCCEEECTTCB-CGGG
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHH---HHhCCCCCCEEECCCCC-CCcc
Confidence 55567888899999999998754333332 2456899999999997 5534444 67889999999999863 332
Q ss_pred -cC--CCcCCCCCCCCCCCccccceeecccccccccc-ccccCCCCCcCEEeecCCCCCCcCCCC--CCcCccceeeecC
Q 048062 576 -FP--LKADDKGSGTTLPLPASLTTLWIFNFPNLERL-SSSIVDLQYLTSLYLLECPKLKYFPEK--GLPSSLLLLIIWE 649 (686)
Q Consensus 576 -~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~ 649 (686)
++ ..+ ..+++|++|++++| .+..+ |..+..+++|++|++++|. +..++.. ..+++| .|++++
T Consensus 465 ~~~~~~~~---------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 465 NIQKTNSL---------QTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECSSCGG---------GGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCS
T ss_pred ccccchhh---------ccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcC
Confidence 22 122 35678999999995 55555 5677889999999999974 5544332 235678 889988
Q ss_pred ChhHHHHhhcCCCCCccccCCcceEEecceeecc
Q 048062 650 CPLIVEKCRKDGGQYWDLLTHIPRVEIDGKSVFG 683 (686)
Q Consensus 650 c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 683 (686)
|..-. ...+.+..++.+..+++.|++...
T Consensus 533 N~l~~-----~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 533 NHISI-----ILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp SCCCC-----CCGGGHHHHHTSSEEECTTCCEEC
T ss_pred Ccccc-----cCHhhcccCCCCCEEeCCCCCccc
Confidence 84321 112235566777888888876643
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=2.3e-31 Score=293.97 Aligned_cols=441 Identities=17% Similarity=0.156 Sum_probs=207.1
Q ss_pred ccchh-cccceeeeccCCcccc---cccCCCCcceEEEEcCccceeEcc-ccccCCCcceeecccCcchhhccCCCCCCc
Q 048062 114 TRTKH-LLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQL 188 (686)
Q Consensus 114 ~~p~~-l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l 188 (686)
.+|.. +++|++|++++|.... ..++.+++|++|++++|.....+. .+..+++|++|
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L------------------- 79 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL------------------- 79 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-------------------
T ss_pred cccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE-------------------
Confidence 44443 3678888888876443 457788888888888887666543 34445555555
Q ss_pred cchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccc-c
Q 048062 189 PKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP-Q 267 (686)
Q Consensus 189 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p-~ 267 (686)
++++|.+...++..++.+++|++|++++|. ++.++.. ..++.+ ++|++|++++|..+..+| .
T Consensus 80 ---------~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~~~~l----~~L~~L~L~~n~~~~~~~~~ 142 (549)
T 2z81_A 80 ---------DLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVT---SLFPNL----TNLQTLRIGNVETFSEIRRI 142 (549)
T ss_dssp ---------ECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSS---CSCTTC----TTCCEEEEEESSSCCEECTT
T ss_pred ---------ECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchh---hhhhcc----CCccEEECCCCccccccCHh
Confidence 555555555555555556666666666553 4432110 113444 556666666655444444 2
Q ss_pred cccCCCCccEEeccCCCCCccCCC-CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCccc-----ccc
Q 048062 268 SSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYI-----AGV 341 (686)
Q Consensus 268 ~~~~l~~L~~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~ 341 (686)
.+..+++|++|++++|..-...|. ++.+++|++|+++++. ...++..+. ..+++|++|+++++. +..+ +..
T Consensus 143 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 219 (549)
T 2z81_A 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFA-DILSSVRYLELRDTN-LARFQFSPLPVD 219 (549)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHH-HSTTTBSEEEEESCB-CTTCCCCCCSSC
T ss_pred hhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhH-hhcccccEEEccCCc-cccccccccchh
Confidence 455566666666665542222332 4445556666665532 333333332 135556666665544 2221 111
Q ss_pred cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCc-----------------------------ccc
Q 048062 342 QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCL-----------------------------SLT 392 (686)
Q Consensus 342 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----------------------------~l~ 392 (686)
..+++|+.|+++++.--...+ ..+.. .....++|+.+++++|. .+.
T Consensus 220 ~~~~~L~~L~l~~n~l~~~~~--~~l~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 294 (549)
T 2z81_A 220 EVSSPMKKLAFRGSVLTDESF--NELLK---LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294 (549)
T ss_dssp CCCCCCCEEEEESCEEEHHHH--HHHHG---GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS
T ss_pred hhhhcccceeccccccchhHH--HHHHH---Hhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence 334555555555432111000 00000 00012234455544432 111
Q ss_pred ccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhh-cCCCCCCeeeecccCCccccc---ccccCCCCCcEEE
Q 048062 393 CIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERL-DNNTSLETIAVSFCRNLKILP---SGLHNLRQLQEIG 468 (686)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l-~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~ 468 (686)
.......++.... ..++|++|++++| .++.+|..+ ..+++|++|++++|.....+| ..+..+++|++|+
T Consensus 295 ~~~~~~~l~~~~~------~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 295 QFYLFYDLSTVYS------LLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp CGGGSCCCCHHHH------HSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred hhhhcccchhhhh------hcccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 1000011111100 0134555555554 234444443 345555555555555444332 2244455555555
Q ss_pred ecCceeeecCC---CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcch
Q 048062 469 IWECDLVSFPQ---GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEI 545 (686)
Q Consensus 469 l~~~~l~~l~~---~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l 545 (686)
+++|.++.++. ....+++|+.|++++| .++.+|..+..+++|++|++++|. ++.++.. .+++|++|++++|. +
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~-~~~~L~~L~Ls~N~-l 443 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC-IPQTLEVLDVSNNN-L 443 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTT-SCTTCSEEECCSSC-C
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccch-hcCCceEEECCCCC-h
Confidence 55555544432 2333445555555553 444555555555555555555532 3333321 23455555555554 3
Q ss_pred hhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccccccc-ccCCCCCcCEEee
Q 048062 546 WKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDLQYLTSLYL 624 (686)
Q Consensus 546 ~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l~~L~~L~i 624 (686)
++ ....+++|++|++++| +++.+|... .+++|++|++++ +.++.++. .+..+++|+.|++
T Consensus 444 ~~-------~~~~l~~L~~L~Ls~N-~l~~ip~~~----------~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 444 DS-------FSLFLPRLQELYISRN-KLKTLPDAS----------LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp SC-------CCCCCTTCCEEECCSS-CCSSCCCGG----------GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEEC
T ss_pred hh-------hcccCChhcEEECCCC-ccCcCCCcc----------cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEe
Confidence 31 1234455555555553 444444321 334555555555 23444332 2444555555555
Q ss_pred cCCC
Q 048062 625 LECP 628 (686)
Q Consensus 625 ~~c~ 628 (686)
++|+
T Consensus 505 ~~N~ 508 (549)
T 2z81_A 505 HTNP 508 (549)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 5543
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=3.3e-31 Score=294.22 Aligned_cols=479 Identities=15% Similarity=0.116 Sum_probs=290.9
Q ss_pred cccchhc-ccceeeeccCCcccc---cccCCCCcceEEEEcCccceeEcc-ccccCCCcceeecccCcchhhccCCCCCC
Q 048062 113 RTRTKHL-LALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQ 187 (686)
Q Consensus 113 ~~~p~~l-~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 187 (686)
..+|..+ +++++|+++++.... ..+..+++|++|++++|.....+. .+..+++|++|.+.+..-..+. +..
T Consensus 20 ~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~ 95 (570)
T 2z63_A 20 YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA----LGA 95 (570)
T ss_dssp SSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC----TTT
T ss_pred cccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC----Hhh
Confidence 4456544 479999999886544 468889999999999988776643 4666777777755544322221 225
Q ss_pred ccchhhhhhchhhhhhhhcccchhhhcCcCccEeeccccccccc--ccchhhHHHHHHhhhcCCCccEEEccCCCCCccc
Q 048062 188 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQS--LVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL 265 (686)
Q Consensus 188 l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~--lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 265 (686)
|.++++|+.+++++|.+..++...++.+++|++|++++|. ++. +|.. ++.+ ++|++|++++|......
T Consensus 96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-----~~~l----~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-----FSNL----TNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-----GGGC----TTCCEEECTTSCCCEEC
T ss_pred hcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-----hccc----CCCCEEeCcCCccceec
Confidence 6666666666666666666665556666666666666664 443 3333 5555 66666666666542223
Q ss_pred cccccCCCCc----cEEeccCCCCCccCCC-CCCCCCCcEEecccccc-ccccchhhhcccCCCccEEeEec--CC---C
Q 048062 266 PQSSLSLSSL----REIEIYKCSSLVSFPE-VALPSKLKKIQIRECDA-LKSLPQAWMCDNNSSLEILKIWD--CH---S 334 (686)
Q Consensus 266 p~~~~~l~~L----~~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~-l~~l~~~~~~~~l~~L~~L~l~~--~~---~ 334 (686)
|..++.+++| +.|++++|. +..+++ .....+|+.|+++++.. ...++..+. .++.++.+.+.. .. .
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ--GLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHH--TTTTCEEEEEEEEECCCCSS
T ss_pred HHHccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccchhhhhc--CccccceeeeccccccCchh
Confidence 3445555555 566666664 333332 22233566666665421 111222222 344444433321 11 1
Q ss_pred Ccccccc--cCC--CcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhcc
Q 048062 335 LTYIAGV--QLP--PSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVG 410 (686)
Q Consensus 335 l~~~~~~--~~~--~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~ 410 (686)
+..++.. ..+ -.++.+.+.++..+..... ..+. .+++|+.|+++++ .++. +| .+ ..
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~-------~l~~L~~L~l~~~-~l~~-l~-----~~-----~~ 302 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFN-------CLTNVSSFSLVSV-TIER-VK-----DF-----SY 302 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTG-------GGTTCSEEEEESC-EECS-CC-----BC-----CS
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhch-hhhc-------CcCcccEEEecCc-cchh-hh-----hh-----hc
Confidence 1111111 001 1234445544422221110 1111 1456888888884 4443 22 22 12
Q ss_pred CCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeec---CCCCCCCCCc
Q 048062 411 NLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSF---PQGGLPCAKL 487 (686)
Q Consensus 411 ~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l---~~~~~~~~~L 487 (686)
.+ +|++|++++|. +..+|. ..+++|+.|++++|......+. ..+++|++|++++|.+..+ +.....+++|
T Consensus 303 ~~--~L~~L~l~~n~-~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 303 NF--GWQHLELVNCK-FGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp CC--CCSEEEEESCB-CSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred cC--CccEEeeccCc-ccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCcc
Confidence 22 78888888864 446663 5788888888888876655443 6678888888888866644 4445566788
Q ss_pred cEEeeccccccccccccccCCCCCCeEEecCCCCCCCCC--CCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEE
Q 048062 488 MRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLE--EDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQL 565 (686)
Q Consensus 488 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L 565 (686)
+.|++++| .+..++..+..+++|++|++++|......+ ....+++|++|++++|. +.+..+. .+..+++|+.|
T Consensus 376 ~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L 450 (570)
T 2z63_A 376 KYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG---IFNGLSSLEVL 450 (570)
T ss_dssp CEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCTT---TTTTCTTCCEE
T ss_pred CEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccchh---hhhcCCcCcEE
Confidence 88888885 455566568888888888888865333322 22456788889988887 4434444 67788889999
Q ss_pred EeccCCCc-eEcCCCcCCCCCCCCCCCccccceeecccccccccc-ccccCCCCCcCEEeecCCCCCCcCCCCC--CcCc
Q 048062 566 TIINCDDV-VSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERL-SSSIVDLQYLTSLYLLECPKLKYFPEKG--LPSS 641 (686)
Q Consensus 566 ~i~~c~~l-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~ 641 (686)
++++|.-. ..+|..+ ..+++|++|++++| .++.+ |..+..+++|++|++++| ++..++... .+++
T Consensus 451 ~l~~n~l~~~~~p~~~---------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 451 KMAGNSFQENFLPDIF---------TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTS 519 (570)
T ss_dssp ECTTCEEGGGEECSCC---------TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred ECcCCcCccccchhhh---------hcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccC
Confidence 99886432 2566555 36678899999885 45555 667788889999999886 577776543 3678
Q ss_pred cceeeecCCh
Q 048062 642 LLLLIIWECP 651 (686)
Q Consensus 642 L~~L~i~~c~ 651 (686)
|+.|++++||
T Consensus 520 L~~L~l~~N~ 529 (570)
T 2z63_A 520 LQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSSC
T ss_pred CcEEEecCCc
Confidence 8999988865
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3.4e-30 Score=297.85 Aligned_cols=488 Identities=14% Similarity=0.070 Sum_probs=247.2
Q ss_pred cccchhcccceeeeccCCcccc---cccCCCCcceEEEEcCcccee-E-ccccccCCCcceeecccCcchhhccCCCCCC
Q 048062 113 RTRTKHLLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVV-W-RSATDHLGSQNSVVCRDTSNQVFLAGPLKPQ 187 (686)
Q Consensus 113 ~~~p~~l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 187 (686)
..+|.-.+++++|+++++.... ..++.+++|++|++++|.... + +..+..+++|++|.+.++..... .+..
T Consensus 17 ~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~----~p~~ 92 (844)
T 3j0a_A 17 TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL----HPDA 92 (844)
T ss_dssp SCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE----CTTS
T ss_pred CCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc----CHhH
Confidence 4455534678888888775443 567788888888888874433 3 45566777777775554433222 2336
Q ss_pred ccchhhhhhchhhhhhhhccc--chhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccc
Q 048062 188 LPKLEELILSTKEQTYIWKSH--DGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL 265 (686)
Q Consensus 188 l~~l~~L~~l~l~~n~~~~~~--~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 265 (686)
|.++++|+.+++++|.+.... ...+..+++|++|++++|. ++.++.. ..++.+ ++|++|++++|......
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~---~~~~~L----~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLH---PSFGKL----NSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCC---GGGGTC----SSCCEEEEESSCCCCCC
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccc---hhHhhC----CCCCEEECCCCcCCeeC
Confidence 666777777777777666522 2235667777777777664 4444321 125555 67777777776543444
Q ss_pred cccccCC--CCccEEeccCCCCCccCCC-CCCCC------CCcEEeccccccccccchhhhc-ccCCCccEEeEecCC--
Q 048062 266 PQSSLSL--SSLREIEIYKCSSLVSFPE-VALPS------KLKKIQIRECDALKSLPQAWMC-DNNSSLEILKIWDCH-- 333 (686)
Q Consensus 266 p~~~~~l--~~L~~L~l~~~~~l~~lp~-~~~l~------~L~~L~l~~~~~l~~l~~~~~~-~~l~~L~~L~l~~~~-- 333 (686)
|..+..+ ++|+.|++++|......|. ++.++ +|+.|+++++..-...+..+.. ....+++.+.+..+.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 5555544 6677777776653333332 22222 2677777665332222222220 012445555544211
Q ss_pred ------CCcccccc----cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhh
Q 048062 334 ------SLTYIAGV----QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPAT 403 (686)
Q Consensus 334 ------~l~~~~~~----~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 403 (686)
.+...... ..+++|+.|+++++. +..++. ..+.. +++|+.|++++ +.++. .+ |..
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~-------l~~L~~L~L~~-n~i~~-~~----~~~ 309 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNS-RVFET-------LKDLKVLNLAY-NKINK-IA----DEA 309 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECS-CCSSS-------CCCCCEEEEES-CCCCE-EC----TTT
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCc-ccccCh-hhhhc-------CCCCCEEECCC-CcCCC-CC----hHH
Confidence 11111110 112456666665543 222210 11111 33466666665 34443 11 111
Q ss_pred hhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCC
Q 048062 404 LESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLP 483 (686)
Q Consensus 404 ~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~ 483 (686)
+ ..+ ++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++.
T Consensus 310 ~-----~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---- 379 (844)
T 3j0a_A 310 F-----YGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---- 379 (844)
T ss_dssp T-----TTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----
T ss_pred h-----cCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----
Confidence 1 112 456666666654333334455566666666666654433333445556666666666665554443
Q ss_pred CCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC---CCCCCCceeeccCCcchhhhhhhcccccCCCC
Q 048062 484 CAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED---GLPTNLHSLEINSNKEIWKSMIERGRGFHRFS 560 (686)
Q Consensus 484 ~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~ 560 (686)
+++|+.|++++| .+..+|.. ..+++.|++++| .++.++.. ..+++|++|++++|. +....+. ..+..++
T Consensus 380 ~~~L~~L~l~~N-~l~~l~~~---~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~~~~ 451 (844)
T 3j0a_A 380 IPSIPDIFLSGN-KLVTLPKI---NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR-FSSCSGD--QTPSENP 451 (844)
T ss_dssp CCSCSEEEEESC-CCCCCCCC---CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSS--SSSCSCT
T ss_pred CCCcchhccCCC-Cccccccc---ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc-ccccccc--cccccCC
Confidence 345566666553 33344432 334555555552 23333221 134566666666665 3311111 1234455
Q ss_pred CccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccccccc-ccCCCCCcCEEeecCCCCCCcCCCCCCc
Q 048062 561 SLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDLQYLTSLYLLECPKLKYFPEKGLP 639 (686)
Q Consensus 561 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 639 (686)
+|+.|+++++ .+..++... ........+++|++|++++ +.++.++. .+..+++|+.|+++++ ++..+|...++
T Consensus 452 ~L~~L~Ls~N-~l~~~~~~~---~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~ 525 (844)
T 3j0a_A 452 SLEQLFLGEN-MLQLAWETE---LCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP 525 (844)
T ss_dssp TCCBCEEESC-CCSSSCCSC---CCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC
T ss_pred ccccccCCCC-ccccccccc---cchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCCC-CCCccChhhhh
Confidence 6666666663 332221100 0001112445677777776 35555543 3456677777777764 56666665556
Q ss_pred CccceeeecCCh
Q 048062 640 SSLLLLIIWECP 651 (686)
Q Consensus 640 ~~L~~L~i~~c~ 651 (686)
++|+.|++++|.
T Consensus 526 ~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 526 ANLEILDISRNQ 537 (844)
T ss_dssp SCCCEEEEEEEC
T ss_pred ccccEEECCCCc
Confidence 667777776663
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.5e-31 Score=291.66 Aligned_cols=432 Identities=18% Similarity=0.209 Sum_probs=286.6
Q ss_pred CCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCcc
Q 048062 140 LPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK 219 (686)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 219 (686)
.++|++|++++|.....+.. .|.++++|+.+++++|.+...++..+..+++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~---------------------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHG---------------------------DLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp CTTCCEEECCSSCCCEECSS---------------------------TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCccEEECcCCccCccChh---------------------------hhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 36888888888776554322 455566666668888888888888889999999
Q ss_pred EeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCc-cccccccCCCCccEEeccCCCCCccCCC--CCCCC
Q 048062 220 SLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPE--VALPS 296 (686)
Q Consensus 220 ~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~l~ 296 (686)
+|++++|. ++.++.. .++.+ ++|++|++++|.... ..|..++.+++|++|++++|..++.+|. ++.++
T Consensus 78 ~L~Ls~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 78 HLDLSDNH-LSSLSSS----WFGPL----SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp EEECTTSC-CCSCCHH----HHTTC----TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred EEECCCCc-cCccCHH----HhccC----CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999996 7777763 37777 999999999997532 4567899999999999999976777773 77899
Q ss_pred CCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEeeccccCccccccc-ccccccccc
Q 048062 297 KLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYLCYNLRTLTVE-EGIQCSSSR 373 (686)
Q Consensus 297 ~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~~~~ 373 (686)
+|++|+++++..-...+..+. .+++|++|+++++. ...++.. ..+++|+.|+++++. +..++.. ..+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~----- 219 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLK--SIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVD----- 219 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSC-----
T ss_pred ccCeeeccCCcccccChhhhh--ccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccccchh-----
Confidence 999999999765555666665 68999999999876 4444433 458999999999864 4432100 0110
Q ss_pred cccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCcc-------------------------
Q 048062 374 RYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLE------------------------- 428 (686)
Q Consensus 374 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~------------------------- 428 (686)
...++|+.|+++++ .+++ .. +..+... ...+ ++|+.+++++|...+
T Consensus 220 -~~~~~L~~L~l~~n-~l~~-~~----~~~l~~~-~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 220 -EVSSPMKKLAFRGS-VLTD-ES----FNELLKL-LRYI-LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp -CCCCCCCEEEEESC-EEEH-HH----HHHHHGG-GGGC-TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred -hhhhcccceecccc-ccch-hH----HHHHHHH-hhhh-ccccccccccccccccccccccchhhhhhhcccccccccc
Confidence 11346999999884 4443 11 1111111 1112 456666665553211
Q ss_pred ----------chHHhhcCCCCCCeeeecccCCcccccccc-cCCCCCcEEEecCceeee-c---CCCCCCCCCccEEeec
Q 048062 429 ----------SIAERLDNNTSLETIAVSFCRNLKILPSGL-HNLRQLQEIGIWECDLVS-F---PQGGLPCAKLMRLEIS 493 (686)
Q Consensus 429 ----------~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~-l---~~~~~~~~~L~~L~l~ 493 (686)
.++......++|+.|++++|. +..+|..+ ..+++|++|++++|.+.. + +.....+++|+.|+++
T Consensus 291 ~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp CBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred cccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 011112234566777776654 34555544 357778888888776653 2 2234456678888887
Q ss_pred ccccccccc---ccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEecc
Q 048062 494 YCKRLQVLP---KGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIIN 569 (686)
Q Consensus 494 ~~~~l~~l~---~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~ 569 (686)
+| .++.++ ..+..+++|++|++++| .++.+|.. +.+++|++|++++|. ++ .++. ...++|+.|++++
T Consensus 370 ~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~-~l~~-----~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 370 QN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IR-VVKT-----CIPQTLEVLDVSN 440 (549)
T ss_dssp TS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CS-CCCT-----TSCTTCSEEECCS
T ss_pred CC-cccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cc-cccc-----hhcCCceEEECCC
Confidence 74 455544 24677778888888775 45556543 446678888888776 44 2322 1135778888877
Q ss_pred CCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCCC--CcCccceeee
Q 048062 570 CDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKG--LPSSLLLLII 647 (686)
Q Consensus 570 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L~~L~i 647 (686)
| .++.++. .+++|++|++++ +.++.+|. ...+++|+.|++++| +++.++... .+++|+.|++
T Consensus 441 N-~l~~~~~------------~l~~L~~L~Ls~-N~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 441 N-NLDSFSL------------FLPRLQELYISR-NKLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp S-CCSCCCC------------CCTTCCEEECCS-SCCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred C-Chhhhcc------------cCChhcEEECCC-CccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEe
Confidence 4 5555442 446788888888 47777775 356788888888885 566666542 3677888888
Q ss_pred cCCh
Q 048062 648 WECP 651 (686)
Q Consensus 648 ~~c~ 651 (686)
++||
T Consensus 505 ~~N~ 508 (549)
T 2z81_A 505 HTNP 508 (549)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 7765
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=288.01 Aligned_cols=485 Identities=15% Similarity=0.074 Sum_probs=332.6
Q ss_pred CCcceEEEEcCccceeEcc-ccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCc
Q 048062 140 LPALCKFIIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL 218 (686)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L 218 (686)
.+++++|++++|.....+. .+..+++|++|++.+..-..+ .+..|.++++|+.+++++|.+...++..+..+++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc----CcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 4589999999998877654 578889999997766543332 23367788888888888888888887778888888
Q ss_pred cEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCc-cccccccCCCCccEEeccCCCCCccCCC--CCCC
Q 048062 219 KSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLV-KLPQSSLSLSSLREIEIYKCSSLVSFPE--VALP 295 (686)
Q Consensus 219 ~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~l 295 (686)
++|++++|. ++.++... ++.+ ++|++|++++|.... .+|..++.+++|++|++++|. +..++. ++.+
T Consensus 103 ~~L~L~~n~-l~~l~~~~----~~~l----~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 172 (570)
T 2z63_A 103 QKLVAVETN-LASLENFP----IGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 172 (570)
T ss_dssp CEEECTTSC-CCCSTTCS----CTTC----TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHH
T ss_pred ccccccccc-cccCCCcc----cccc----ccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccch
Confidence 888888875 77766531 5556 888888888876433 467888888888888888875 555542 4445
Q ss_pred CCC----cEEeccccccccccchhhhcccCCCccEEeEecCCCCc-ccccc-cCCCcccEEeec--cc---cCccccccc
Q 048062 296 SKL----KKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLT-YIAGV-QLPPSLKRLEIY--LC---YNLRTLTVE 364 (686)
Q Consensus 296 ~~L----~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~-~~~~~L~~L~l~--~c---~~l~~l~~~ 364 (686)
++| +.|+++++. +..++.... ...+|++|++.++..-. .++.. ..++.++.+.+. .. ..+..++
T Consensus 173 ~~L~~~~~~L~l~~n~-l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~-- 247 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNP-MNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD-- 247 (570)
T ss_dssp HTCTTCCCEEECTTCC-CCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC--
T ss_pred hccchhhhhcccCCCC-ceecCHHHh--ccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc--
Confidence 566 778888754 444443332 23478888887753111 11111 234444443332 11 1112221
Q ss_pred ccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeee
Q 048062 365 EGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIA 444 (686)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~ 444 (686)
.. .+.....-.++.+++.++..+.. ..|..+..+ ++|++|++++| .+..+|..+..+ +|++|+
T Consensus 248 ~~----~~~~l~~l~l~~l~l~~~~~~~~-----~~~~~~~~l------~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 248 KS----ALEGLCNLTIEEFRLAYLDYYLD-----DIIDLFNCL------TNVSSFSLVSV-TIERVKDFSYNF-GWQHLE 310 (570)
T ss_dssp TT----TTGGGGGSEEEEEEEEETTEEES-----CSTTTTGGG------TTCSEEEEESC-EECSCCBCCSCC-CCSEEE
T ss_pred hh----hhccccccchhhhhhhcchhhhh-----hchhhhcCc------CcccEEEecCc-cchhhhhhhccC-CccEEe
Confidence 11 11111122366777776544443 223443333 79999999996 566788888888 999999
Q ss_pred ecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccc---cccccCCCCCCeEEecCCCC
Q 048062 445 VSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVL---PKGLHNLTSLQQLRIGKGVE 521 (686)
Q Consensus 445 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l---~~~l~~l~~L~~L~l~~c~~ 521 (686)
+++|... .+|. ..+++|+.|++++|.+...... ..+++|+.|++++|. +... +..+..+++|++|++++|.
T Consensus 311 l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~- 384 (570)
T 2z63_A 311 LVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG- 384 (570)
T ss_dssp EESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-
T ss_pred eccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-
Confidence 9998765 5554 4689999999999966543333 567799999999964 4433 5678899999999999975
Q ss_pred CCCCCC-CCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeec
Q 048062 522 LPSLEE-DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWI 600 (686)
Q Consensus 522 l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 600 (686)
+..++. ...+++|++|++++|. +....+. ..+..+++|+.|++++|.-....+..+ ..+++|++|++
T Consensus 385 l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l 452 (570)
T 2z63_A 385 VITMSSNFLGLEQLEHLDFQHSN-LKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIF---------NGLSSLEVLKM 452 (570)
T ss_dssp EEEEEEEEETCTTCCEEECTTSE-EESCTTS--CTTTTCTTCCEEECTTSCCEECCTTTT---------TTCTTCCEEEC
T ss_pred cccccccccccCCCCEEEccCCc-cccccch--hhhhcCCCCCEEeCcCCcccccchhhh---------hcCCcCcEEEC
Confidence 333332 3456899999999998 5434443 367889999999999974433345444 36789999999
Q ss_pred cccccc-cccccccCCCCCcCEEeecCCCCCCcC-CCC-CCcCccceeeecCChhHHHHhhcCCCCCccccCCcceEEec
Q 048062 601 FNFPNL-ERLSSSIVDLQYLTSLYLLECPKLKYF-PEK-GLPSSLLLLIIWECPLIVEKCRKDGGQYWDLLTHIPRVEID 677 (686)
Q Consensus 601 ~~~~~L-~~l~~~~~~l~~L~~L~i~~c~~l~~l-~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~ 677 (686)
++|.-. ..+|..+..+++|++|++++|. +..+ |.. ..+++|++|++++|. +. ....+.+..++++..+++.
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~----~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LK----SVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CC----CCCHHHhhcccCCcEEEec
Confidence 996543 3688888999999999999974 5555 432 347899999999994 22 1123356778888999999
Q ss_pred ceeeccC
Q 048062 678 GKSVFGD 684 (686)
Q Consensus 678 ~~~~~~~ 684 (686)
++.+.++
T Consensus 527 ~N~~~~~ 533 (570)
T 2z63_A 527 TNPWDCS 533 (570)
T ss_dssp SSCBCCC
T ss_pred CCcccCC
Confidence 9877553
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6.8e-31 Score=293.59 Aligned_cols=347 Identities=17% Similarity=0.216 Sum_probs=211.2
Q ss_pred ccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcc------------------cccccc--CCCCccEEeccCCCCCc
Q 048062 228 KLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVK------------------LPQSSL--SLSSLREIEIYKCSSLV 287 (686)
Q Consensus 228 ~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~------------------~p~~~~--~l~~L~~L~l~~~~~l~ 287 (686)
.++.+|.. ++.+ ++|++|++++|.. .. +|..++ .+++|++|++++|....
T Consensus 194 ~l~~ip~~-----l~~l----~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~ 263 (636)
T 4eco_A 194 NITFVSKA-----VMRL----TKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263 (636)
T ss_dssp EEEEECGG-----GGGC----TTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS
T ss_pred CCccCCHH-----Hhcc----cCCCEEECcCCcc-ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc
Confidence 46667765 7777 8888888888874 54 888888 88888888888887666
Q ss_pred cCCC-CCCCCCCcEEecccccccc--ccchhhhc----ccCCCccEEeEecCCCCccccc---ccCCCcccEEeeccccC
Q 048062 288 SFPE-VALPSKLKKIQIRECDALK--SLPQAWMC----DNNSSLEILKIWDCHSLTYIAG---VQLPPSLKRLEIYLCYN 357 (686)
Q Consensus 288 ~lp~-~~~l~~L~~L~l~~~~~l~--~l~~~~~~----~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~c~~ 357 (686)
.+|. ++.+++|++|++++|..+. .+|..+.. ..+++|++|++++|. ++.+|. ...+++|+.|+++++.-
T Consensus 264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCC
T ss_pred cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcC
Confidence 7775 7778888888888875354 46666541 123788888888865 556665 35677788888777542
Q ss_pred cccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCC-CceEEecCCCCccchHHhhcC
Q 048062 358 LRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPS-LKSLRVGGCSKLESIAERLDN 436 (686)
Q Consensus 358 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~l~~~l~~ 436 (686)
-..+|.... +++|+.|+++++ .++. +| ..+.. + ++ |++|++++|. +..+|..+..
T Consensus 343 ~g~ip~~~~----------l~~L~~L~L~~N-~l~~-lp-----~~l~~-----l-~~~L~~L~Ls~N~-l~~lp~~~~~ 398 (636)
T 4eco_A 343 EGKLPAFGS----------EIKLASLNLAYN-QITE-IP-----ANFCG-----F-TEQVENLSFAHNK-LKYIPNIFDA 398 (636)
T ss_dssp EEECCCCEE----------EEEESEEECCSS-EEEE-CC-----TTSEE-----E-CTTCCEEECCSSC-CSSCCSCCCT
T ss_pred ccchhhhCC----------CCCCCEEECCCC-cccc-cc-----Hhhhh-----h-cccCcEEEccCCc-Ccccchhhhh
Confidence 224542222 224777777763 4443 22 33222 2 34 7777777754 3366655554
Q ss_pred CC--CCCeeeecccCCccccccccc-------CCCCCcEEEecCceeeecCCCCC-CCCCccEEeecccccccccccccc
Q 048062 437 NT--SLETIAVSFCRNLKILPSGLH-------NLRQLQEIGIWECDLVSFPQGGL-PCAKLMRLEISYCKRLQVLPKGLH 506 (686)
Q Consensus 437 l~--~L~~L~l~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~l~~l~~~~~-~~~~L~~L~l~~~~~l~~l~~~l~ 506 (686)
++ +|+.|++++|......|..+. .+++|+.|++++|.+..+|.... .+++|+.|++++| .+..+|....
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 477 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSL 477 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHh
Confidence 43 677777777766666665555 55677777777776666665433 3556777777664 3445554322
Q ss_pred C--------CCCCCeEEecCCCCCCCCCCC-C--CCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccC-----
Q 048062 507 N--------LTSLQQLRIGKGVELPSLEED-G--LPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC----- 570 (686)
Q Consensus 507 ~--------l~~L~~L~l~~c~~l~~~~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c----- 570 (686)
. +++|++|++++|. ++.+|.. . .+++|++|++++|. +++ +|. .+..+++|+.|++++|
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~-ip~---~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSK-FPT---QPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSS-CCC---GGGGCSSCCEEECCSCBCTTC
T ss_pred ccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCC-cCh---hhhcCCCCCEEECCCCccccc
Confidence 1 2266777776643 4455543 1 45666666666665 443 444 4556666777766432
Q ss_pred -CCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCC
Q 048062 571 -DDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECP 628 (686)
Q Consensus 571 -~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 628 (686)
.-...+|..++ .+++|++|++++ +.++.+|..+. ++|+.|++++|+
T Consensus 552 N~l~~~~p~~l~---------~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 552 NRTLREWPEGIT---------LCPSLTQLQIGS-NDIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CBCCCCCCTTGG---------GCSSCCEEECCS-SCCCBCCSCCC--TTCCEEECCSCT
T ss_pred CcccccChHHHh---------cCCCCCEEECCC-CcCCccCHhHh--CcCCEEECcCCC
Confidence 12333444442 455666666666 34466665433 566666666653
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.5e-31 Score=286.89 Aligned_cols=410 Identities=15% Similarity=0.107 Sum_probs=282.4
Q ss_pred CccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCc-cc
Q 048062 187 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLV-KL 265 (686)
Q Consensus 187 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~-~~ 265 (686)
.|.++++|+.+++++|.+....+..+..+++|++|++++|. ++.+|.. .+ ++|++|++++|.... .+
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-------~l----~~L~~L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH-------PT----VNLKHLDLSFNAFDALPI 107 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC-------CC----CCCSEEECCSSCCSSCCC
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc-------cc----CCccEEeccCCccccccc
Confidence 44555556666777777887777778888888888888885 7777663 34 888888888886533 36
Q ss_pred cccccCCCCccEEeccCCCCCccCCCCCCCCCC--cEEecccccc--ccccchhhhcccCC-CccEEeEecCCCCccccc
Q 048062 266 PQSSLSLSSLREIEIYKCSSLVSFPEVALPSKL--KKIQIRECDA--LKSLPQAWMCDNNS-SLEILKIWDCHSLTYIAG 340 (686)
Q Consensus 266 p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L--~~L~l~~~~~--l~~l~~~~~~~~l~-~L~~L~l~~~~~l~~~~~ 340 (686)
|..++.+++|++|++++|. +.. ..+..+++| +.|+++++.. ....|..+. .+. +...+++.++.....++.
T Consensus 108 p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~~ 183 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTH-LEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ--DFNTESLHIVFPTNKEFHFILD 183 (520)
T ss_dssp CGGGGGCTTCCEEEEEESS-CCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT--TCCEEEEEEECCSSSCCCCCCC
T ss_pred hhhhccCCcceEEEecCcc-cch-hhccccccceeeEEEeeccccccccccccccc--ccccceEEEEeccCcchhhhhh
Confidence 7788888888888888875 443 335556667 8888888654 344444333 222 122445555554433333
Q ss_pred c--cCCCcccEEeeccccC-------cccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccC
Q 048062 341 V--QLPPSLKRLEIYLCYN-------LRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGN 411 (686)
Q Consensus 341 ~--~~~~~L~~L~l~~c~~-------l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~ 411 (686)
. ..+++|+.++++++.. ...++ .+. ..++|+.|+++++ .+.. .....++... .
T Consensus 184 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~l~-------~l~~L~~L~l~~~-~l~~-~~~~~~~~~~------~ 245 (520)
T 2z7x_B 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILA---KLQ-------TNPKLSNLTLNNI-ETTW-NSFIRILQLV------W 245 (520)
T ss_dssp CCCTTCSEEEECCEEECCSTTTTHHHHHHHH---GGG-------GCTTCCEEEEEEE-EEEH-HHHHHHHHHH------H
T ss_pred hhhhcccceeeccccccccccccceeecchh---hhc-------cccchhhcccccc-ccCH-HHHHHHHHHh------h
Confidence 2 4577888888887541 11111 111 2446888888874 3332 1000011110 1
Q ss_pred CCCCCceEEecCCCCccchHHhh-----cCCCCCCeeeecccCCccccc-ccccCC---CCCcEEEecCceeeecCCCCC
Q 048062 412 LPPSLKSLRVGGCSKLESIAERL-----DNNTSLETIAVSFCRNLKILP-SGLHNL---RQLQEIGIWECDLVSFPQGGL 482 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~l~~l---~~L~~L~l~~~~l~~l~~~~~ 482 (686)
. ++|++|++++|...+.+|..+ ..+++|+.+++++|.. .+| ..+..+ .+|+.|++++|.+..++. ..
T Consensus 246 ~-~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~ 321 (520)
T 2z7x_B 246 H-TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS 321 (520)
T ss_dssp T-SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred h-CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence 1 589999999976555778777 8888999999988776 455 333333 679999999997765542 14
Q ss_pred CCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCC----CCCCCCCceeeccCCcchhhhhhhcccccCC
Q 048062 483 PCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEE----DGLPTNLHSLEINSNKEIWKSMIERGRGFHR 558 (686)
Q Consensus 483 ~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 558 (686)
.+++|++|++++|.....+|..+..+++|++|++++|. ++.++. ...+++|++|++++|. +.+.++. ..+..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~--~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK--GDCSW 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG--CSCCC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCccccc--chhcc
Confidence 56799999999976555678888999999999999964 554332 2457899999999998 6544665 45788
Q ss_pred CCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCCC-
Q 048062 559 FSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKG- 637 (686)
Q Consensus 559 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~- 637 (686)
+++|+.|++++|.--..++.. .+++|++|++++ +.++.+|..+..+++|++|++++| +++.+|...
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~-----------l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 464 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRC-----------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIF 464 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGS-----------CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CccCCEEECcCCCCCcchhhh-----------hcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHh
Confidence 899999999996433334432 337999999999 588899988889999999999996 688898753
Q ss_pred -CcCccceeeecCCh
Q 048062 638 -LPSSLLLLIIWECP 651 (686)
Q Consensus 638 -~~~~L~~L~i~~c~ 651 (686)
.+++|++|++++||
T Consensus 465 ~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccCCcccEEECcCCC
Confidence 36789999999876
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=285.35 Aligned_cols=466 Identities=16% Similarity=0.086 Sum_probs=322.8
Q ss_pred CCCcceEEEEcCccceeE-ccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcC
Q 048062 139 SLPALCKFIIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICS 217 (686)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~ 217 (686)
..++|++|++++|..... +..+..+++|+.|.+...... ....+..|.++++|+.+++++|.+....+..+..+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 557999999999988775 456888999999977665321 1112447888999999999999999888888889999
Q ss_pred ccEeeccccccccc-ccchhhHHHHHHhhhcCCCccEEEccCCCCCccc-cccccCCCCccEEeccCCCCCccC-CC-CC
Q 048062 218 LKSLEIRSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSF-PE-VA 293 (686)
Q Consensus 218 L~~L~L~~~~~l~~-lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-p~~~~~l~~L~~L~l~~~~~l~~l-p~-~~ 293 (686)
|++|++++|. ++. ++.. ..+..+ ++|++|++++|...... +..++.+++|++|++++|. +..+ +. ++
T Consensus 99 L~~L~Ls~n~-l~~~~~~~---~~~~~L----~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~ 169 (844)
T 3j0a_A 99 LFELRLYFCG-LSDAVLKD---GYFRNL----KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELE 169 (844)
T ss_dssp CCCEECTTCC-CSSCCSTT---CCCSSC----SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGH
T ss_pred cCEeeCcCCC-CCcccccC---cccccc----CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcc
Confidence 9999999886 544 4432 235566 89999999998653332 3468889999999999885 4433 22 33
Q ss_pred CC--CCCcEEeccccccccccchhhhcccCC------CccEEeEecCCCCccccc----ccCCCcccEEeeccccCcccc
Q 048062 294 LP--SKLKKIQIRECDALKSLPQAWMCDNNS------SLEILKIWDCHSLTYIAG----VQLPPSLKRLEIYLCYNLRTL 361 (686)
Q Consensus 294 ~l--~~L~~L~l~~~~~l~~l~~~~~~~~l~------~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~c~~l~~l 361 (686)
.+ ++|+.|+++++......+..+. .++ .|++|++++|..-...+. ....+.++.+.+..+..-...
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWG--KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCC--SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccCCccceEECCCCccccccccchh--hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 34 7899999988765444444332 222 489999988742222221 122356677766522110000
Q ss_pred c--ccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCC
Q 048062 362 T--VEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTS 439 (686)
Q Consensus 362 ~--~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~ 439 (686)
. .........+.....++|+.|+++++ .+.. .+ +.. ...+ ++|+.|++++|......+..+..+++
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~-~~----~~~-----~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~ 315 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFS-LN----SRV-----FETL-KDLKVLNLAYNKINKIADEAFYGLDN 315 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCE-EC----SCC-----SSSC-CCCCEEEEESCCCCEECTTTTTTCSS
T ss_pred cccccCCCChhhhhccccCCccEEECCCC-cccc-cC----hhh-----hhcC-CCCCEEECCCCcCCCCChHHhcCCCC
Confidence 0 00011111122333467999999984 5555 22 122 2223 78999999997655555778899999
Q ss_pred CCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccccccCCCCCCeEEecC
Q 048062 440 LETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGK 518 (686)
Q Consensus 440 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 518 (686)
|++|++++|......+..+..+++|+.|++++|.+..++. .+..+++|+.|++++| .++.++ .+++|+.|++++
T Consensus 316 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~----~~~~L~~L~l~~ 390 (844)
T 3j0a_A 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH----FIPSIPDIFLSG 390 (844)
T ss_dssp CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCS----SCCSCSEEEEES
T ss_pred CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCccc----CCCCcchhccCC
Confidence 9999999988776667888899999999999998887776 3556789999999985 555443 388999999999
Q ss_pred CCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCcccccee
Q 048062 519 GVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTL 598 (686)
Q Consensus 519 c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L 598 (686)
| .+..++.. ..+++.|++++|. +...-.. ..+..+++|+.|++++| .+..++... ....+++|++|
T Consensus 391 N-~l~~l~~~--~~~l~~L~ls~N~-l~~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------~~~~~~~L~~L 456 (844)
T 3j0a_A 391 N-KLVTLPKI--NLTANLIHLSENR-LENLDIL--YFLLRVPHLQILILNQN-RFSSCSGDQ-------TPSENPSLEQL 456 (844)
T ss_dssp C-CCCCCCCC--CTTCCEEECCSCC-CCSSTTH--HHHTTCTTCCEEEEESC-CCCCCCSSS-------SSCSCTTCCBC
T ss_pred C-Cccccccc--ccccceeecccCc-cccCchh--hhhhcCCccceeeCCCC-ccccccccc-------ccccCCccccc
Confidence 5 45566653 5689999999987 5422111 23568999999999995 565544321 01246799999
Q ss_pred eccccccccccc------cccCCCCCcCEEeecCCCCCCcCCCCC--CcCccceeeecCCh
Q 048062 599 WIFNFPNLERLS------SSIVDLQYLTSLYLLECPKLKYFPEKG--LPSSLLLLIIWECP 651 (686)
Q Consensus 599 ~l~~~~~L~~l~------~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 651 (686)
++++ +.++.++ ..+..+++|+.|++++| ++..++... .+++|+.|++++|.
T Consensus 457 ~Ls~-N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 457 FLGE-NMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp EEES-CCCSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred cCCC-CccccccccccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCC
Confidence 9999 5565333 34678899999999996 688887654 37899999999984
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.8e-28 Score=278.33 Aligned_cols=348 Identities=16% Similarity=0.166 Sum_probs=197.1
Q ss_pred CCCCccchhhhhhchhhhhhhhc------------------ccchh-hhcCcCccEeecccccccccccchhhHHHHHHh
Q 048062 184 LKPQLPKLEELILSTKEQTYIWK------------------SHDGL-LQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQL 244 (686)
Q Consensus 184 ~~~~l~~l~~L~~l~l~~n~~~~------------------~~~~~-~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l 244 (686)
+|..|.++++|+.+++++|.+.. +|... |..+++|++|++++|.....+|.. +..+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-----l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-----LYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-----GGGC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-----HhCC
Confidence 34456666667777777766666 33332 226677777777766655556544 5555
Q ss_pred hhcCCCccEEEccCCCCCc--cccccccCC-------CCccEEeccCCCCCccCCC---CCCCCCCcEEecccccccccc
Q 048062 245 CELSCRLEYLALSGCEGLV--KLPQSSLSL-------SSLREIEIYKCSSLVSFPE---VALPSKLKKIQIRECDALKSL 312 (686)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~--~~p~~~~~l-------~~L~~L~l~~~~~l~~lp~---~~~l~~L~~L~l~~~~~l~~l 312 (686)
++|++|++++|..+. .+|..++.+ ++|++|++++|. +..+|. ++.+++|+.|+++++. +..+
T Consensus 515 ----~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~l 588 (876)
T 4ecn_A 515 ----PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHL 588 (876)
T ss_dssp ----SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBC
T ss_pred ----CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccc
Confidence 677777777665233 356544433 367777777664 446665 5666677777776643 4455
Q ss_pred chhhhcccCCCccEEeEecCCCCcccccc-cCCCc-ccEEeeccccCcccccccccccccccccccCCCccEEeccCCcc
Q 048062 313 PQAWMCDNNSSLEILKIWDCHSLTYIAGV-QLPPS-LKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLS 390 (686)
Q Consensus 313 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~-L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 390 (686)
| .+. .+++|+.|++++|. +..++.. ..+++ |+.|+++++. +..+| ..+. ....++|+.|++++| .
T Consensus 589 p-~~~--~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp--~~~~-----~~~~~~L~~L~Ls~N-~ 655 (876)
T 4ecn_A 589 E-AFG--TNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIP--NIFN-----AKSVYVMGSVDFSYN-K 655 (876)
T ss_dssp C-CCC--TTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCC--SCCC-----TTCSSCEEEEECCSS-C
T ss_pred h-hhc--CCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCc--hhhh-----ccccCCCCEEECcCC-c
Confidence 5 332 56667777776654 4444432 33455 7777776643 44444 2221 122234677777763 3
Q ss_pred ccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhh-cCCCCCCeeeecccCCcccccccccC--------C
Q 048062 391 LTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERL-DNNTSLETIAVSFCRNLKILPSGLHN--------L 461 (686)
Q Consensus 391 l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~--------l 461 (686)
+....| .++..+..+ .. ++|+.|++++|. +..+|..+ ..+++|+.|++++|... .+|..+.. +
T Consensus 656 l~g~ip--~l~~~l~~~---~~-~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 656 IGSEGR--NISCSMDDY---KG-INASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp TTTTSS--SCSSCTTTC---CC-CCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred CCCccc--cchhhhccc---cC-CCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 332111 111111100 11 367777777753 33555444 36777777777776443 45443322 2
Q ss_pred CCCcEEEecCceeeecCCCCC--CCCCccEEeeccccccccccccccCCCCCCeEEecC------CCCCCCCCCC-CCCC
Q 048062 462 RQLQEIGIWECDLVSFPQGGL--PCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGK------GVELPSLEED-GLPT 532 (686)
Q Consensus 462 ~~L~~L~l~~~~l~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~------c~~l~~~~~~-~~~~ 532 (686)
++|+.|++++|.+..+|.... .+++|+.|++++| .+..+|..+..+++|+.|++++ |.....+|.. ..++
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 377777777777667766554 5667777777774 4455676677777777777765 2223333322 3356
Q ss_pred CCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCC
Q 048062 533 NLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCD 571 (686)
Q Consensus 533 ~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~ 571 (686)
+|++|++++|. +. .+|. .+ .++|+.|++++|+
T Consensus 807 ~L~~L~Ls~N~-L~-~Ip~---~l--~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 807 SLIQLQIGSND-IR-KVDE---KL--TPQLYILDIADNP 838 (876)
T ss_dssp SCCEEECCSSC-CC-BCCS---CC--CSSSCEEECCSCT
T ss_pred CCCEEECCCCC-CC-ccCH---hh--cCCCCEEECCCCC
Confidence 77777777776 43 5555 22 2577777777754
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.3e-29 Score=272.99 Aligned_cols=436 Identities=17% Similarity=0.108 Sum_probs=246.9
Q ss_pred ccchh-cccceeeeccCCcccc---cccCCCCcceEEEEcCccceeE-ccccccCCCcceeecccCcchhhccCCCCCCc
Q 048062 114 TRTKH-LLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVW-RSATDHLGSQNSVVCRDTSNQVFLAGPLKPQL 188 (686)
Q Consensus 114 ~~p~~-l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l 188 (686)
.+|.. .++|++|++++|.... ..+..+++|++|++++|..... +..+..+++|++|++
T Consensus 14 ~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L----------------- 76 (520)
T 2z7x_B 14 HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL----------------- 76 (520)
T ss_dssp SCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC-----------------
T ss_pred cccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec-----------------
Confidence 34443 3789999999987554 4578899999999999887765 445566666666644
Q ss_pred cchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccc--cchhhHHHHHHhhhcCCCccEEEccCCCCCcccc
Q 048062 189 PKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSL--VAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP 266 (686)
Q Consensus 189 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--p~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p 266 (686)
++|.+..++.. .+++|++|++++|. ++.+ |.. ++.+ ++|++|++++|.. ..
T Consensus 77 -----------s~N~l~~lp~~---~l~~L~~L~L~~N~-l~~~~~p~~-----~~~l----~~L~~L~L~~n~l-~~-- 129 (520)
T 2z7x_B 77 -----------SHNKLVKISCH---PTVNLKHLDLSFNA-FDALPICKE-----FGNM----SQLKFLGLSTTHL-EK-- 129 (520)
T ss_dssp -----------CSSCCCEEECC---CCCCCSEEECCSSC-CSSCCCCGG-----GGGC----TTCCEEEEEESSC-CG--
T ss_pred -----------CCCceeecCcc---ccCCccEEeccCCc-cccccchhh-----hccC----CcceEEEecCccc-ch--
Confidence 44444443332 45555555555553 3332 222 4444 5555555555432 22
Q ss_pred ccccCCCCc--cEEeccCCCC--CccCCC-CCCCC-CCcEEeccccccccccchhhhcccCCCccEEeEecCC-------
Q 048062 267 QSSLSLSSL--REIEIYKCSS--LVSFPE-VALPS-KLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH------- 333 (686)
Q Consensus 267 ~~~~~l~~L--~~L~l~~~~~--l~~lp~-~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~------- 333 (686)
..+..+++| ++|++++|.. ....|. +..+. +.-.++++++.....++.... ..+++|+.+++++|.
T Consensus 130 ~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHH
T ss_pred hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccce
Confidence 223334444 5555555432 112221 11111 111233333332222222111 234555555555543
Q ss_pred CCcccccccCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCC
Q 048062 334 SLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLP 413 (686)
Q Consensus 334 ~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~ 413 (686)
....++....+++|+.|+++++.--.... .++. .....++|++|++++| .++. .+|..+.....+.+
T Consensus 209 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~~----~~~~~~~L~~L~l~~n-~l~~-----~~p~~~~~~~~~~l- 275 (520)
T 2z7x_B 209 FLSILAKLQTNPKLSNLTLNNIETTWNSF--IRIL----QLVWHTTVWYFSISNV-KLQG-----QLDFRDFDYSGTSL- 275 (520)
T ss_dssp HHHHHHGGGGCTTCCEEEEEEEEEEHHHH--HHHH----HHHHTSSCSEEEEEEE-EEES-----CCCCCCCCCCSCCC-
T ss_pred eecchhhhccccchhhccccccccCHHHH--HHHH----HHhhhCcccEEEeecc-cccC-----ccccchhhcccccC-
Confidence 11111222344555555555432111100 0000 0001224666666663 3331 12222100001223
Q ss_pred CCCceEEecCCCCccchH-HhhcCC---CCCCeeeecccCCcccccccccCCCCCcEEEecCceeee-cCCCCCCCCCcc
Q 048062 414 PSLKSLRVGGCSKLESIA-ERLDNN---TSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVS-FPQGGLPCAKLM 488 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~-~~l~~l---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~~~~~~~~L~ 488 (686)
++|+.++++++.. .+| ..+..+ .+|+.|++++|...... ....+++|++|++++|.+.. +|.....+++|+
T Consensus 276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 5677777777644 444 344433 67888888887654321 12567888888888887775 566667778888
Q ss_pred EEeeccccccc--cccccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccE
Q 048062 489 RLEISYCKRLQ--VLPKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQ 564 (686)
Q Consensus 489 ~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~ 564 (686)
.|++++|.... .+|..+..+++|++|++++|.....+|.. ..+++|++|++++|. +++.++. .+. ++|+.
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~l~--~~L~~ 425 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFR---CLP--PRIKV 425 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGG---SCC--TTCCE
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhh---hhc--ccCCE
Confidence 88888854332 45566888899999999886544436643 456789999999987 5444444 222 78999
Q ss_pred EEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccc-cCCCCCcCEEeecCCC
Q 048062 565 LTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS-IVDLQYLTSLYLLECP 628 (686)
Q Consensus 565 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~l~~L~~L~i~~c~ 628 (686)
|++++| .++.+|.... .+++|++|++++ +.++.+|.. +..+++|++|++++++
T Consensus 426 L~Ls~N-~l~~ip~~~~---------~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 426 LDLHSN-KIKSIPKQVV---------KLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EECCSS-CCCCCCGGGG---------GCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-cccccchhhh---------cCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 999985 7778887553 667999999999 578889876 7789999999999975
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.7e-29 Score=276.98 Aligned_cols=415 Identities=16% Similarity=0.177 Sum_probs=308.2
Q ss_pred hhhhhchhhhhhhhcccchhhhcCcCccEeecccccc------cc------cccchhh--------------------HH
Q 048062 192 EELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPK------LQ------SLVAEEE--------------------KD 239 (686)
Q Consensus 192 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~------l~------~lp~~~~--------------------~~ 239 (686)
.+++.++++++.+.+..+..++.+++|++|++++|.. .. .+|.... ..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4677889999999887778899999999999999852 11 1221100 00
Q ss_pred HHHHhhh-----------cCCCccEEEccC-CCCCccccccccCCCCccEEeccCCCCCcc------------------C
Q 048062 240 QQQQLCE-----------LSCRLEYLALSG-CEGLVKLPQSSLSLSSLREIEIYKCSSLVS------------------F 289 (686)
Q Consensus 240 ~l~~l~~-----------~~~~L~~L~l~~-~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~------------------l 289 (686)
.+..+.. ....++.+.+.. +..++.+|..++.+++|++|++++|. ++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 0000000 001122222222 22345689999999999999999997 666 8
Q ss_pred CC-CC--CCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcc--cccc-cC------CCcccEEeeccccC
Q 048062 290 PE-VA--LPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTY--IAGV-QL------PPSLKRLEIYLCYN 357 (686)
Q Consensus 290 p~-~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~-~~------~~~L~~L~l~~c~~ 357 (686)
|. ++ .+++|++|++++|.....+|..+. ++++|++|++++|..++. +|.. .. +++|+.|+++++.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~- 316 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN- 316 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTT--TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHh--cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-
Confidence 86 77 899999999999988888898777 799999999999874553 5543 22 4899999999964
Q ss_pred cccccccccccccccccccCCCccEEeccCCcccc-ccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcC
Q 048062 358 LRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLT-CIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDN 436 (686)
Q Consensus 358 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 436 (686)
++.+|....+.. +++|+.|++++ +.++ . +| .+ +.+ ++|++|++++| .+..+|..+..
T Consensus 317 l~~ip~~~~l~~-------l~~L~~L~L~~-N~l~g~-ip------~~-----~~l-~~L~~L~L~~N-~l~~lp~~l~~ 374 (636)
T 4eco_A 317 LKTFPVETSLQK-------MKKLGMLECLY-NQLEGK-LP------AF-----GSE-IKLASLNLAYN-QITEIPANFCG 374 (636)
T ss_dssp CSSCCCHHHHTT-------CTTCCEEECCS-CCCEEE-CC------CC-----EEE-EEESEEECCSS-EEEECCTTSEE
T ss_pred CCccCchhhhcc-------CCCCCEEeCcC-CcCccc-hh------hh-----CCC-CCCCEEECCCC-ccccccHhhhh
Confidence 557772003443 55799999999 4555 3 33 22 222 68999999996 55588989999
Q ss_pred CCC-CCeeeecccCCcccccccccCCC--CCcEEEecCceeee-cCCCCC-------CCCCccEEeecccccccccccc-
Q 048062 437 NTS-LETIAVSFCRNLKILPSGLHNLR--QLQEIGIWECDLVS-FPQGGL-------PCAKLMRLEISYCKRLQVLPKG- 504 (686)
Q Consensus 437 l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~~-l~~~~~-------~~~~L~~L~l~~~~~l~~l~~~- 504 (686)
+++ |++|++++|... .+|..+..++ +|+.|++++|.+.. +|.... .+++|+.|++++| .+..+|..
T Consensus 375 l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~ 452 (636)
T 4eco_A 375 FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKEL 452 (636)
T ss_dssp ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHH
T ss_pred hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHH
Confidence 999 999999998865 7887776644 99999999998764 444333 5679999999995 56678775
Q ss_pred ccCCCCCCeEEecCCCCCCCCCCCCC--C-------CCCceeeccCCcchhhhhhhcccccC--CCCCccEEEeccCCCc
Q 048062 505 LHNLTSLQQLRIGKGVELPSLEEDGL--P-------TNLHSLEINSNKEIWKSMIERGRGFH--RFSSLRQLTIINCDDV 573 (686)
Q Consensus 505 l~~l~~L~~L~l~~c~~l~~~~~~~~--~-------~~L~~L~l~~~~~l~~~~~~~~~~l~--~l~~L~~L~i~~c~~l 573 (686)
+..+++|++|++++|. ++.+|...+ . ++|++|++++|. ++ .+|. .+. .+++|+.|++++| .+
T Consensus 453 ~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~lp~---~~~~~~l~~L~~L~Ls~N-~l 525 (636)
T 4eco_A 453 FSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LT-KLSD---DFRATTLPYLVGIDLSYN-SF 525 (636)
T ss_dssp HHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CC-BCCG---GGSTTTCTTCCEEECCSS-CC
T ss_pred HccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CC-ccCh---hhhhccCCCcCEEECCCC-CC
Confidence 4569999999999964 557776532 1 289999999998 66 5665 454 8999999999995 66
Q ss_pred eEcCCCcCCCCCCCCCCCccccceeeccc------cccccccccccCCCCCcCEEeecCCCCCCcCCCCCCcCccceeee
Q 048062 574 VSFPLKADDKGSGTTLPLPASLTTLWIFN------FPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKGLPSSLLLLII 647 (686)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i 647 (686)
..+|...+ .+++|++|++++ +.....+|..+..+++|++|++++|. +..+|.. +.++|+.|++
T Consensus 526 ~~ip~~~~---------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~L 594 (636)
T 4eco_A 526 SKFPTQPL---------NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDI 594 (636)
T ss_dssp SSCCCGGG---------GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEEC
T ss_pred CCcChhhh---------cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEEC
Confidence 66887663 678999999954 44467888889999999999999975 5999875 4589999999
Q ss_pred cCChh
Q 048062 648 WECPL 652 (686)
Q Consensus 648 ~~c~~ 652 (686)
++|+.
T Consensus 595 s~N~l 599 (636)
T 4eco_A 595 KDNPN 599 (636)
T ss_dssp CSCTT
T ss_pred cCCCC
Confidence 99964
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=3e-28 Score=276.51 Aligned_cols=344 Identities=17% Similarity=0.201 Sum_probs=264.6
Q ss_pred ccccccccCCCCccEEeccCCCCCcc------------------CCC-CC--CCCCCcEEeccccccccccchhhhcccC
Q 048062 263 VKLPQSSLSLSSLREIEIYKCSSLVS------------------FPE-VA--LPSKLKKIQIRECDALKSLPQAWMCDNN 321 (686)
Q Consensus 263 ~~~p~~~~~l~~L~~L~l~~~~~l~~------------------lp~-~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~l 321 (686)
..+|..++.+++|++|++++|. +.. +|. ++ .+++|+.|++++|.....+|..+. ++
T Consensus 438 ~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~--~L 514 (876)
T 4ecn_A 438 TFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY--DL 514 (876)
T ss_dssp EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG--GC
T ss_pred cchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh--CC
Confidence 4488889999999999999986 555 776 56 799999999999888888887776 79
Q ss_pred CCccEEeEecCCCCcc--cccc--------cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccc
Q 048062 322 SSLEILKIWDCHSLTY--IAGV--------QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSL 391 (686)
Q Consensus 322 ~~L~~L~l~~~~~l~~--~~~~--------~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 391 (686)
++|++|++++|..++. +|.. ..+++|+.|+++++. +..+|....+.. +++|+.|+++++ .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~-------L~~L~~L~Ls~N-~l 585 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQK-------MVKLGLLDCVHN-KV 585 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTT-------CTTCCEEECTTS-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhc-------CCCCCEEECCCC-Cc
Confidence 9999999999864553 4432 345699999999864 557762003443 557999999984 45
Q ss_pred cccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCC-CCeeeecccCCcccccccccCCC--CCcEEE
Q 048062 392 TCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTS-LETIAVSFCRNLKILPSGLHNLR--QLQEIG 468 (686)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~ 468 (686)
+. +| . .+.+ ++|+.|++++|. +..+|..+..+++ |+.|++++|... .+|..+..++ +|+.|+
T Consensus 586 ~~-lp------~-----~~~L-~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 586 RH-LE------A-----FGTN-VKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CB-CC------C-----CCTT-SEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred cc-ch------h-----hcCC-CcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 54 33 2 3333 789999999975 4488888999999 999999998755 7787776654 499999
Q ss_pred ecCceeeec-CC---CC--CCCCCccEEeeccccccccccccc-cCCCCCCeEEecCCCCCCCCCCCCC---------CC
Q 048062 469 IWECDLVSF-PQ---GG--LPCAKLMRLEISYCKRLQVLPKGL-HNLTSLQQLRIGKGVELPSLEEDGL---------PT 532 (686)
Q Consensus 469 l~~~~l~~l-~~---~~--~~~~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~~~~~~~---------~~ 532 (686)
+++|.+... |. .. ...++|+.|++++| .+..+|..+ ..+++|+.|++++| .+..+|...+ ++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccC
Confidence 999977533 22 11 23458999999995 566888755 48999999999996 5667766422 12
Q ss_pred CCceeeccCCcchhhhhhhcccccC--CCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccc------cc
Q 048062 533 NLHSLEINSNKEIWKSMIERGRGFH--RFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFN------FP 604 (686)
Q Consensus 533 ~L~~L~l~~~~~l~~~~~~~~~~l~--~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~ 604 (686)
+|++|++++|. ++ .+|. .+. .+++|+.|++++| .+..+|...+ .+++|+.|++++ +.
T Consensus 729 ~L~~L~Ls~N~-L~-~lp~---~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~---------~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 729 LLTTIDLRFNK-LT-SLSD---DFRATTLPYLSNMDVSYN-CFSSFPTQPL---------NSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp GCCEEECCSSC-CC-CCCG---GGSTTTCTTCCEEECCSS-CCSSCCCGGG---------GCTTCCEEECCCCBCTTCCB
T ss_pred CccEEECCCCC-Cc-cchH---HhhhccCCCcCEEEeCCC-CCCccchhhh---------cCCCCCEEECCCCCCccccc
Confidence 89999999997 66 5665 454 8999999999995 6667887663 678999999977 44
Q ss_pred cccccccccCCCCCcCEEeecCCCCCCcCCCCCCcCccceeeecCChh
Q 048062 605 NLERLSSSIVDLQYLTSLYLLECPKLKYFPEKGLPSSLLLLIIWECPL 652 (686)
Q Consensus 605 ~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 652 (686)
....+|..+..+++|+.|++++|. +..+|.. +.++|+.|++++|+.
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTT
T ss_pred ccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCC
Confidence 466788888999999999999975 5899875 557999999999974
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.7e-28 Score=267.68 Aligned_cols=410 Identities=15% Similarity=0.086 Sum_probs=219.0
Q ss_pred CccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccc-
Q 048062 187 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL- 265 (686)
Q Consensus 187 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~- 265 (686)
.|.++++|+.+++++|.+..+.+..+..+++|++|++++|. ++.+|.. .+ ++|++|++++|.. ..+
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-------~l----~~L~~L~Ls~N~l-~~l~ 137 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC-------PM----ASLRHLDLSFNDF-DVLP 137 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC-------CC----TTCSEEECCSSCC-SBCC
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc-------cc----ccCCEEECCCCCc-cccC
Confidence 34444444444555555666655556666666666666664 5665542 23 6666666666653 333
Q ss_pred -cccccCCCCccEEeccCCCCCccCCCCCCCCCC--cEEecccccc--ccccchhhhcccCC-CccEEeEecCCCCcccc
Q 048062 266 -PQSSLSLSSLREIEIYKCSSLVSFPEVALPSKL--KKIQIRECDA--LKSLPQAWMCDNNS-SLEILKIWDCHSLTYIA 339 (686)
Q Consensus 266 -p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L--~~L~l~~~~~--l~~l~~~~~~~~l~-~L~~L~l~~~~~l~~~~ 339 (686)
|..++.+++|++|++++|. +.. ..+..+++| +.|+++++.. ....+..+. .+. ..-.+++.++.....++
T Consensus 138 ~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 138 VCKEFGNLTKLTFLGLSAAK-FRQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQ--IPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp CCGGGGGCTTCCEEEEECSB-CCT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEE--ECCEEEEEEEECSSSCCCCCC
T ss_pred chHhhcccCcccEEecCCCc-ccc-CchhhhhhceeeEEEeecccccccccCccccc--ccCcceEEEEecCccchhhhh
Confidence 3556666667777666654 332 123333344 6666666533 222232222 111 01123333333222222
Q ss_pred cc--cCCCcccEEeecccc----CcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCC
Q 048062 340 GV--QLPPSLKRLEIYLCY----NLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLP 413 (686)
Q Consensus 340 ~~--~~~~~L~~L~l~~c~----~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~ 413 (686)
.. ..+++|+.++++++. .+.... ..+. ..++|+.+++.++ .+.. .....++..+ ..
T Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~-------~l~~L~~L~L~~~-~l~~-~~~~~~~~~~------~~- 275 (562)
T 3a79_B 214 NMSVNALGHLQLSNIKLNDENCQRLMTFL--SELT-------RGPTLLNVTLQHI-ETTW-KCSVKLFQFF------WP- 275 (562)
T ss_dssp EEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHH-------SCSSCEEEEEEEE-EECH-HHHHHHHHHH------TT-
T ss_pred hhcccccceEEEecccccccccchHHHHH--HHHh-------ccCcceEEEecCC-cCcH-HHHHHHHHhh------hc-
Confidence 11 334556666665531 111110 0111 1233555555542 1111 0000011110 11
Q ss_pred CCCceEEecCCCCccchHHhh-----cCCCCCCeeeecccCCccccc-cccc---CCCCCcEEEecCceeeecCCCCCCC
Q 048062 414 PSLKSLRVGGCSKLESIAERL-----DNNTSLETIAVSFCRNLKILP-SGLH---NLRQLQEIGIWECDLVSFPQGGLPC 484 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~l~---~l~~L~~L~l~~~~l~~l~~~~~~~ 484 (686)
++|++|++++|...+.+|..+ .+++.|+.+++..+.. .+| ..+. ...+|++|++++|.+..++. ...+
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l 352 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSP 352 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-ccCC
Confidence 367777777765444555544 3444444444444332 222 1111 12467777777776554332 1345
Q ss_pred CCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCC----CCCCCCCceeeccCCcchhhhhhhcccccCCCC
Q 048062 485 AKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEE----DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFS 560 (686)
Q Consensus 485 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~ 560 (686)
++|+.|++++|......|..+..+++|++|++++| .++.++. ...+++|++|++++|. +...++. ..+..++
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~--~~~~~l~ 428 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYD--RTCAWAE 428 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSS--CCCCCCT
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccCh--hhhcCcc
Confidence 67888888776544456667777888888888774 4554432 2445778888888877 5433544 3466778
Q ss_pred CccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCC--CC
Q 048062 561 SLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEK--GL 638 (686)
Q Consensus 561 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~ 638 (686)
+|+.|++++|.--..++.. .+++|++|++++ +.++.+|..+..+++|++|++++| +++.+|.. ..
T Consensus 429 ~L~~L~l~~n~l~~~~~~~-----------l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 495 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRC-----------LPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDR 495 (562)
T ss_dssp TCCEEECCSSCCCGGGGSS-----------CCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTT
T ss_pred cCCEEECCCCCCCcchhhh-----------hcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhc
Confidence 8888888875322233331 336788888888 477788877778888888888874 57777764 23
Q ss_pred cCccceeeecCCh
Q 048062 639 PSSLLLLIIWECP 651 (686)
Q Consensus 639 ~~~L~~L~i~~c~ 651 (686)
+++|+.|++++||
T Consensus 496 l~~L~~L~l~~N~ 508 (562)
T 3a79_B 496 LTSLQYIWLHDNP 508 (562)
T ss_dssp CTTCCCEECCSCC
T ss_pred CCCCCEEEecCCC
Confidence 6778888888765
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.5e-26 Score=260.28 Aligned_cols=221 Identities=17% Similarity=0.081 Sum_probs=166.7
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcc--cccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEe
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLK--ILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLE 491 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~ 491 (686)
..|+.+++..+...... ....+++|+.+++++|.... ..+.....+.+|+.+++..+....++.....+++|+.++
T Consensus 349 ~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLD 426 (635)
T ss_dssp TTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEE
T ss_pred hhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchh
Confidence 56777777775433322 24578899999999876543 334455678899999999997777777777788999999
Q ss_pred eccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEecc
Q 048062 492 ISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIIN 569 (686)
Q Consensus 492 l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~ 569 (686)
+..+......+. .+..+++++.++++++......+.. ..+++|++|++++|.......+. .+..+++|+.|++++
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQ 503 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTT
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch---hhhhccccCEEECCC
Confidence 998766655443 6778999999999986533222222 45789999999999866644554 789999999999999
Q ss_pred CCCceEcC-CCcCCCCCCCCCCCccccceeecccccccccccc-ccCCCCCcCEEeecCCCCCCcCCCCC---CcCccce
Q 048062 570 CDDVVSFP-LKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDLQYLTSLYLLECPKLKYFPEKG---LPSSLLL 644 (686)
Q Consensus 570 c~~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~---~~~~L~~ 644 (686)
| .++.++ ..+ ..+++|++|++++ ++++.++. .+..+++|++|+++++ ++..++... ++++|+.
T Consensus 504 N-~L~~l~~~~f---------~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 504 C-QLEQLSPTAF---------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp S-CCCEECTTTT---------TTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCE
T ss_pred C-ccCCcChHHH---------cCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCE
Confidence 6 677765 444 3678999999999 68888865 5788999999999995 677776643 3578999
Q ss_pred eeecCCh
Q 048062 645 LIIWECP 651 (686)
Q Consensus 645 L~i~~c~ 651 (686)
|+++++|
T Consensus 572 L~L~~Np 578 (635)
T 4g8a_A 572 LNLTQND 578 (635)
T ss_dssp EECTTCC
T ss_pred EEeeCCC
Confidence 9998755
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.7e-27 Score=250.90 Aligned_cols=403 Identities=23% Similarity=0.246 Sum_probs=229.9
Q ss_pred CCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCcc
Q 048062 140 LPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLK 219 (686)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 219 (686)
...|++|+++++....+|..++.+++|++|.+... -+.|..+..+.++.+|+.+++.... ..+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n----~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~ 74 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWS----EWERNAPPGNGEQREMAVSRLRDCL-----------DRQAH 74 (454)
T ss_dssp ------------------------CCHHHHHHHHH----HHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCC----cccccCCcccccchhcchhhhhhhh-----------ccCCC
Confidence 45667777776665445555555555555533221 1122334445555554444433221 14568
Q ss_pred EeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCc
Q 048062 220 SLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLK 299 (686)
Q Consensus 220 ~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~ 299 (686)
+|++++|. ++.+|.. +++|++|++++|.. ..+|.. +++|++|++++|. ++.+|.+ .++|+
T Consensus 75 ~L~l~~~~-l~~lp~~------------~~~L~~L~l~~n~l-~~lp~~---~~~L~~L~l~~n~-l~~l~~~--~~~L~ 134 (454)
T 1jl5_A 75 ELELNNLG-LSSLPEL------------PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNN-LKALSDL--PPLLE 134 (454)
T ss_dssp EEECTTSC-CSCCCSC------------CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSC-CSCCCSC--CTTCC
T ss_pred EEEecCCc-cccCCCC------------cCCCCEEEccCCcC-Cccccc---cCCCcEEECCCCc-cCcccCC--CCCCC
Confidence 88888885 7776653 27888999988764 667753 3788889988874 6666643 36888
Q ss_pred EEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccccCCC
Q 048062 300 KIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSL 379 (686)
Q Consensus 300 ~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~ 379 (686)
+|++++| .++.+|. +. ++++|++|+++++. ++.++. .+++|++|+++++ .++.+|.... +++
T Consensus 135 ~L~L~~n-~l~~lp~-~~--~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L~~n-~l~~l~~~~~----------l~~ 196 (454)
T 1jl5_A 135 YLGVSNN-QLEKLPE-LQ--NSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNN-QLEELPELQN----------LPF 196 (454)
T ss_dssp EEECCSS-CCSSCCC-CT--TCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSSCCCCTT----------CTT
T ss_pred EEECcCC-CCCCCcc-cC--CCCCCCEEECCCCc-CcccCC--CcccccEEECcCC-cCCcCccccC----------CCC
Confidence 9999885 4666773 43 68889999998874 665553 4568889988885 4555552222 446
Q ss_pred ccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccccccc
Q 048062 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLH 459 (686)
Q Consensus 380 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 459 (686)
|+.|++++| .++. +| ..+++|++|++++| .+..+| .++.+++|++|++++|... .+|.
T Consensus 197 L~~L~l~~N-~l~~-l~--------------~~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~--- 254 (454)
T 1jl5_A 197 LTAIYADNN-SLKK-LP--------------DLPLSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLK-TLPD--- 254 (454)
T ss_dssp CCEEECCSS-CCSS-CC--------------CCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCS-SCCS---
T ss_pred CCEEECCCC-cCCc-CC--------------CCcCcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCC-cccc---
Confidence 889988884 5554 22 23368899999887 455677 4788899999999887543 3443
Q ss_pred CCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeec
Q 048062 460 NLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEI 539 (686)
Q Consensus 460 ~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 539 (686)
.+++|+.|++++|.+..+|... ++|+.|++++| .+..+|. ..++|++|++++| .+..++. .+++|++|++
T Consensus 255 ~~~~L~~L~l~~N~l~~l~~~~---~~L~~L~ls~N-~l~~l~~---~~~~L~~L~l~~N-~l~~i~~--~~~~L~~L~L 324 (454)
T 1jl5_A 255 LPPSLEALNVRDNYLTDLPELP---QSLTFLDVSEN-IFSGLSE---LPPNLYYLNASSN-EIRSLCD--LPPSLEELNV 324 (454)
T ss_dssp CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSEESC---CCTTCCEEECCSS-CCSEECC--CCTTCCEEEC
T ss_pred cccccCEEECCCCcccccCccc---CcCCEEECcCC-ccCcccC---cCCcCCEEECcCC-cCCcccC--CcCcCCEEEC
Confidence 2478899999999888877642 58899999885 4555543 1368888998885 4555442 4568899999
Q ss_pred cCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccc--ccccccCCC-
Q 048062 540 NSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLE--RLSSSIVDL- 616 (686)
Q Consensus 540 ~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~--~l~~~~~~l- 616 (686)
++|. ++ .+|. .+++|+.|++++| .++.+|. .+++|++|++++++-.. .+|.++..+
T Consensus 325 s~N~-l~-~lp~------~~~~L~~L~L~~N-~l~~lp~------------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 325 SNNK-LI-ELPA------LPPRLERLIASFN-HLAEVPE------------LPQNLKQLHVEYNPLREFPDIPESVEDLR 383 (454)
T ss_dssp CSSC-CS-CCCC------CCTTCCEEECCSS-CCSCCCC------------CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred CCCc-cc-cccc------cCCcCCEEECCCC-ccccccc------------hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence 8887 55 2443 2578899999885 6666665 34688999998843333 456555555
Q ss_pred ------------CCcCEEeecCCCCCCcCCCCCCcCccceeeecCCh
Q 048062 617 ------------QYLTSLYLLECPKLKYFPEKGLPSSLLLLIIWECP 651 (686)
Q Consensus 617 ------------~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 651 (686)
++|+.|+++++ .+..+|. +|.+|+.|.+.+|.
T Consensus 384 ~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 384 MNSHLAEVPELPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSER 427 (454)
T ss_dssp CCC--------------------------------------------
T ss_pred hcccccccccccCcCCEEECCCC-cCCcccc--chhhHhheeCcCcc
Confidence 78899999885 4554433 56688888888774
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.2e-26 Score=253.05 Aligned_cols=436 Identities=14% Similarity=0.096 Sum_probs=231.7
Q ss_pred ccchh-cccceeeeccCCcccc---cccCCCCcceEEEEcCccceeEc-cccccCCCcceeecccCcchhhccCCCCCCc
Q 048062 114 TRTKH-LLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVWR-SATDHLGSQNSVVCRDTSNQVFLAGPLKPQL 188 (686)
Q Consensus 114 ~~p~~-l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l 188 (686)
.+|.. +++|++|++++|.... ..++.+++|++|++++|.....+ ..+..+++|++|
T Consensus 45 ~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------------------- 105 (562)
T 3a79_B 45 HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL------------------- 105 (562)
T ss_dssp SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-------------------
T ss_pred cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE-------------------
Confidence 34443 3678888888876444 36777888888888887766653 334445555555
Q ss_pred cchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccc
Q 048062 189 PKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQS 268 (686)
Q Consensus 189 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~ 268 (686)
++++|.+..++.. .+++|++|++++|. ++.++.. ..+..+ ++|++|++++|.. .. ..
T Consensus 106 ---------~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~-l~~l~~p---~~~~~l----~~L~~L~L~~n~l-~~--~~ 162 (562)
T 3a79_B 106 ---------DVSHNRLQNISCC---PMASLRHLDLSFND-FDVLPVC---KEFGNL----TKLTFLGLSAAKF-RQ--LD 162 (562)
T ss_dssp ---------ECTTSCCCEECSC---CCTTCSEEECCSSC-CSBCCCC---GGGGGC----TTCCEEEEECSBC-CT--TT
T ss_pred ---------ECCCCcCCccCcc---ccccCCEEECCCCC-ccccCch---Hhhccc----CcccEEecCCCcc-cc--Cc
Confidence 5555555555443 56666666666654 5544321 124555 6666666666543 22 12
Q ss_pred ccCCCCc--cEEeccCCCC--CccCCC-CCCCC-CCcEEeccccccccccchhhhcccCCCccEEeEecCCC-Ccc----
Q 048062 269 SLSLSSL--REIEIYKCSS--LVSFPE-VALPS-KLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHS-LTY---- 337 (686)
Q Consensus 269 ~~~l~~L--~~L~l~~~~~--l~~lp~-~~~l~-~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~-l~~---- 337 (686)
+..+++| ++|++++|.. ....|. +..+. ..-.++++++.....++... ...+++|+.++++++.. ...
T Consensus 163 ~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~l~~~ 241 (562)
T 3a79_B 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTF 241 (562)
T ss_dssp TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEE-ESSEEEEEEEEEECCSTTHHHHHHH
T ss_pred hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhc-ccccceEEEecccccccccchHHHH
Confidence 3333333 6666666542 111221 11111 00122333332222222211 12345566666655421 000
Q ss_pred cccccCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCc
Q 048062 338 IAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLK 417 (686)
Q Consensus 338 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~ 417 (686)
++....+++|+.+++.++.--.... .++. .....++|++|++++| .++..+| ..+.....+.+ +.|+
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~--~~~~----~~~~~~~L~~L~l~~n-~l~~~ip-----~~~~~~~~~~L-~~L~ 308 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCS--VKLF----QFFWPRPVEYLNIYNL-TITERID-----REEFTYSETAL-KSLM 308 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHH--HHHH----HHHTTSSEEEEEEEEE-EECSCCC-----CCCCCCCSCSC-CEEE
T ss_pred HHHHhccCcceEEEecCCcCcHHHH--HHHH----HhhhcccccEEEEecc-Eeecccc-----chhhhcccccc-hhee
Confidence 0111334455555554432110000 0000 0001124666666663 2321122 11100000111 2333
Q ss_pred eEEecCCCCccchH-Hhhc---CCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeee-cCCCCCCCCCccEEee
Q 048062 418 SLRVGGCSKLESIA-ERLD---NNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVS-FPQGGLPCAKLMRLEI 492 (686)
Q Consensus 418 ~L~l~~~~~~~~l~-~~l~---~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l 492 (686)
.+++..+.. .+| ..+. ...+|++|++++|...... ....+++|++|++++|.+.. +|.....+++|+.|++
T Consensus 309 ~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 384 (562)
T 3a79_B 309 IEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384 (562)
T ss_dssp EEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred hhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence 333333322 222 1221 2256777777776543221 12566778888888887664 5556666778888888
Q ss_pred ccccccccc---cccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCC-CCccEEE
Q 048062 493 SYCKRLQVL---PKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRF-SSLRQLT 566 (686)
Q Consensus 493 ~~~~~l~~l---~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l-~~L~~L~ 566 (686)
++| .++.+ |..+..+++|++|++++|.....++.. ..+++|++|++++|. +++.++. .+ ++|+.|+
T Consensus 385 ~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~------~l~~~L~~L~ 456 (562)
T 3a79_B 385 QRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM-LTGSVFR------CLPPKVKVLD 456 (562)
T ss_dssp CSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGS------SCCTTCSEEE
T ss_pred CCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC-CCcchhh------hhcCcCCEEE
Confidence 774 45443 345778888888888886533335543 346788888888887 5434433 23 6888999
Q ss_pred eccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccc-cCCCCCcCEEeecCCC
Q 048062 567 IINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS-IVDLQYLTSLYLLECP 628 (686)
Q Consensus 567 i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~l~~L~~L~i~~c~ 628 (686)
+++| .++.+|.... .+++|++|++++ +.++.+|.. +..+++|+.|++++++
T Consensus 457 L~~N-~l~~ip~~~~---------~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 457 LHNN-RIMSIPKDVT---------HLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSS-CCCCCCTTTT---------SSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCC-cCcccChhhc---------CCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 9885 7778877653 667899999988 678888876 7788899999999875
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.2e-25 Score=240.26 Aligned_cols=318 Identities=18% Similarity=0.199 Sum_probs=141.6
Q ss_pred CCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEe
Q 048062 249 CRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILK 328 (686)
Q Consensus 249 ~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 328 (686)
++|++|++++|. +..+|. ++.+++|++|++++|. +..++.++.+++|++|++++| .+..++. + ..+++|++|+
T Consensus 68 ~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~--~~l~~L~~L~ 140 (466)
T 1o6v_A 68 NNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNN-QITDIDP-L--KNLTNLNRLE 140 (466)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-G--TTCTTCSEEE
T ss_pred cCCCEEECCCCc-cCCchh-hhccccCCEEECCCCc-cccChhhcCCCCCCEEECCCC-CCCCChH-H--cCCCCCCEEE
Confidence 445555555543 233333 4445555555555443 333333444555555555443 2333332 1 1345555555
Q ss_pred EecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhh
Q 048062 329 IWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLE 408 (686)
Q Consensus 329 l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~ 408 (686)
+++|. +..++....+++|+.|++.+ .+..++.... +++|+.|++++| .++. ++ .
T Consensus 141 l~~n~-l~~~~~~~~l~~L~~L~l~~--~~~~~~~~~~----------l~~L~~L~l~~n-~l~~-~~------~----- 194 (466)
T 1o6v_A 141 LSSNT-ISDISALSGLTSLQQLSFGN--QVTDLKPLAN----------LTTLERLDISSN-KVSD-IS------V----- 194 (466)
T ss_dssp EEEEE-ECCCGGGTTCTTCSEEEEEE--SCCCCGGGTT----------CTTCCEEECCSS-CCCC-CG------G-----
T ss_pred CCCCc-cCCChhhccCCcccEeecCC--cccCchhhcc----------CCCCCEEECcCC-cCCC-Ch------h-----
Confidence 54443 33333334444555554432 1222221111 223555555552 2332 11 0
Q ss_pred ccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCcc
Q 048062 409 VGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLM 488 (686)
Q Consensus 409 ~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~ 488 (686)
...+ ++|++|++++|......+ ++.+++|+.|++++|.... + ..+..+++|+.|++++|.+..++. ...+++|+
T Consensus 195 l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKL-TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLT 268 (466)
T ss_dssp GGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCS
T ss_pred hccC-CCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh-hhcCCCCC
Confidence 1112 455555555543222222 4445555555555543322 2 234445555555555555544433 33344555
Q ss_pred EEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEec
Q 048062 489 RLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTII 568 (686)
Q Consensus 489 ~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~ 568 (686)
.|++++| .+..++. +..+++|++|++++| .++.++..+.+++|++|++++|. +.+..+ +..+++|+.|+++
T Consensus 269 ~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 269 ELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDISP-----VSSLTKLQRLFFY 339 (466)
T ss_dssp EEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCGG-----GGGCTTCCEEECC
T ss_pred EEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCchh-----hccCccCCEeECC
Confidence 5555553 3333333 455555555555553 23333333344555555555554 332211 3455555666665
Q ss_pred cCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCC
Q 048062 569 NCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLEC 627 (686)
Q Consensus 569 ~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c 627 (686)
+| .+..++. . ..+++|++|++++| .+..++. +..+++|+.|++++|
T Consensus 340 ~n-~l~~~~~-l---------~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 340 NN-KVSDVSS-L---------ANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp SS-CCCCCGG-G---------TTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE
T ss_pred CC-ccCCchh-h---------ccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCC
Confidence 54 3333321 1 13455666666553 3333332 455666666666654
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=6.8e-26 Score=241.94 Aligned_cols=334 Identities=25% Similarity=0.246 Sum_probs=177.5
Q ss_pred hhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCC
Q 048062 193 ELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSL 272 (686)
Q Consensus 193 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l 272 (686)
+|+.+++++|.+..++. .+++|++|++++|. ++.++.. +++|++|++++|.. ..+| .++.+
T Consensus 92 ~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~-l~~l~~~------------~~~L~~L~L~~n~l-~~lp-~~~~l 152 (454)
T 1jl5_A 92 HLESLVASCNSLTELPE----LPQSLKSLLVDNNN-LKALSDL------------PPLLEYLGVSNNQL-EKLP-ELQNS 152 (454)
T ss_dssp TCSEEECCSSCCSSCCC----CCTTCCEEECCSSC-CSCCCSC------------CTTCCEEECCSSCC-SSCC-CCTTC
T ss_pred CCCEEEccCCcCCcccc----ccCCCcEEECCCCc-cCcccCC------------CCCCCEEECcCCCC-CCCc-ccCCC
Confidence 34444555566665543 24677788887774 6665442 15778888877753 5677 47777
Q ss_pred CCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEee
Q 048062 273 SSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEI 352 (686)
Q Consensus 273 ~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 352 (686)
++|++|++++|. ++.+|.. ..+|++|+++++ .+..+|. +. .+++|++|++++|. ++.++ ..+++|+.|++
T Consensus 153 ~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n-~l~~l~~-~~--~l~~L~~L~l~~N~-l~~l~--~~~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNN-QLEELPE-LQ--NLPFLTAIYADNNS-LKKLP--DLPLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSSCCC-CT--TCTTCCEEECCSSC-CSSCC--CCCTTCCEEEC
T ss_pred CCCCEEECCCCc-CcccCCC--cccccEEECcCC-cCCcCcc-cc--CCCCCCEEECCCCc-CCcCC--CCcCcccEEEC
Confidence 788888887774 5666642 357788888775 4555652 33 57778888887764 44444 23457777877
Q ss_pred ccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHH
Q 048062 353 YLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAE 432 (686)
Q Consensus 353 ~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~ 432 (686)
+++ .+..+|. +.. +++|++|++++ +.++. +| ..+++|++|++++|. +..+|.
T Consensus 223 ~~n-~l~~lp~---~~~-------l~~L~~L~l~~-N~l~~-l~--------------~~~~~L~~L~l~~N~-l~~l~~ 274 (454)
T 1jl5_A 223 GNN-ILEELPE---LQN-------LPFLTTIYADN-NLLKT-LP--------------DLPPSLEALNVRDNY-LTDLPE 274 (454)
T ss_dssp CSS-CCSSCCC---CTT-------CTTCCEEECCS-SCCSS-CC--------------SCCTTCCEEECCSSC-CSCCCC
T ss_pred cCC-cCCcccc---cCC-------CCCCCEEECCC-CcCCc-cc--------------ccccccCEEECCCCc-ccccCc
Confidence 775 4555552 221 34577788777 45554 22 123677888887753 444553
Q ss_pred hhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCC
Q 048062 433 RLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQ 512 (686)
Q Consensus 433 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~ 512 (686)
..++|+.|++++|.... +|. ..++|+.|++++|.+..++.. .++|+.|++++| .+..+|.. +++|+
T Consensus 275 ---~~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N-~l~~lp~~---~~~L~ 340 (454)
T 1jl5_A 275 ---LPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNN-KLIELPAL---PPRLE 340 (454)
T ss_dssp ---CCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSS-CCSCCCCC---CTTCC
T ss_pred ---ccCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCC-cccccccc---CCcCC
Confidence 24677788887765432 221 125777888887777666532 137788888774 45556653 57778
Q ss_pred eEEecCCCCCCCCCCCCCCCCCceeeccCCcchhh--hhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCC
Q 048062 513 QLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWK--SMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLP 590 (686)
Q Consensus 513 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 590 (686)
+|++++| .++.+|. .+++|++|++++|. +.+ .+|. .+..|.. +.....+|.
T Consensus 341 ~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~-l~~l~~ip~---------~l~~L~~--n~~~~~i~~------------ 393 (454)
T 1jl5_A 341 RLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LREFPDIPE---------SVEDLRM--NSHLAEVPE------------ 393 (454)
T ss_dssp EEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSSCCCCCT---------TCCEEEC--CC-------------------
T ss_pred EEECCCC-ccccccc--hhhhccEEECCCCC-CCcCCCChH---------HHHhhhh--ccccccccc------------
Confidence 8888775 4556665 56778888887776 442 1222 2333322 222333332
Q ss_pred CccccceeeccccccccccccccCCCCCcCEEeecCCC
Q 048062 591 LPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECP 628 (686)
Q Consensus 591 ~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 628 (686)
.+++|++|++++ +.++.+|. --++++.|.+.+|.
T Consensus 394 ~~~~L~~L~ls~-N~l~~~~~---iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 394 LPQNLKQLHVET-NPLREFPD---IPESVEDLRMNSER 427 (454)
T ss_dssp --------------------------------------
T ss_pred ccCcCCEEECCC-CcCCcccc---chhhHhheeCcCcc
Confidence 346888888888 45553321 11346666677664
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=7.6e-25 Score=246.38 Aligned_cols=461 Identities=16% Similarity=0.135 Sum_probs=274.2
Q ss_pred cccchhcc-cceeeeccCCcccc---cccCCCCcceEEEEcCccceeEcc-ccccCCCcceeecccCcchhhccCCCCCC
Q 048062 113 RTRTKHLL-ALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKVVWRS-ATDHLGSQNSVVCRDTSNQVFLAGPLKPQ 187 (686)
Q Consensus 113 ~~~p~~l~-~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~~~~~~~~~~~~~~~~~~ 187 (686)
..+|..+| ++++|+++++.... ..|..+++|++|++++|....+++ .+..+++|++|.+.++.-..+.. ..
T Consensus 44 ~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~----~~ 119 (635)
T 4g8a_A 44 YKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL----GA 119 (635)
T ss_dssp SSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG----GG
T ss_pred CccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH----HH
Confidence 45565554 67777777765333 356777777777777777666654 46677777777665554333222 25
Q ss_pred ccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc
Q 048062 188 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ 267 (686)
Q Consensus 188 l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~ 267 (686)
|.++.+|+.+++++|.+..+++..++.+++|++|++++|. ++.++.. ..+..+ ++|++|++++|......|.
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~---~~~~~l----~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLP---EYFSNL----TNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC---GGGGGC----TTCCEEECCSSCCCEECGG
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCc---hhhccc----hhhhhhcccCccccccccc
Confidence 6777777777777777777777667777777777777764 5543221 224555 7777777777754222233
Q ss_pred cccCCCCc----cEEeccCCCCCccCCC-CCCCCCCcEEecccccccccc-chhhh------------------------
Q 048062 268 SSLSLSSL----REIEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSL-PQAWM------------------------ 317 (686)
Q Consensus 268 ~~~~l~~L----~~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l-~~~~~------------------------ 317 (686)
.+..+.++ ..++++.+. +..++. ......++.+++.++.....+ +..+.
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 33332222 244455443 333332 222223333333321100000 00000
Q ss_pred -------------------------------cccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCccccccccc
Q 048062 318 -------------------------------CDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEG 366 (686)
Q Consensus 318 -------------------------------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 366 (686)
...+.+++.+.+.++. +..+.......+++.|++.++. +..++ .
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~--~- 345 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCK-FGQFP--T- 345 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGGSCCCCSEEEEESCE-ESSCC--C-
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccccchhhhhhhccccc-ccCcC--c-
Confidence 0012233333333322 1122222333445555554432 11111 0
Q ss_pred ccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCc--cchHHhhcCCCCCCeee
Q 048062 367 IQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKL--ESIAERLDNNTSLETIA 444 (686)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~--~~l~~~l~~l~~L~~L~ 444 (686)
...+.|+.+.+..+ .....++ ...+ ++|+.|+++++... ...+.....+.+|+.++
T Consensus 346 --------~~l~~L~~l~l~~n-~~~~~~~------------~~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 403 (635)
T 4g8a_A 346 --------LKLKSLKRLTFTSN-KGGNAFS------------EVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403 (635)
T ss_dssp --------CBCTTCCEEEEESC-CSCCBCC------------CCBC-TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred --------ccchhhhhcccccc-cCCCCcc------------cccc-cccccchhhccccccccccccchhhhhhhhhhh
Confidence 01223555555542 2222111 2233 68999999987543 23466677889999999
Q ss_pred ecccCCcccccccccCCCCCcEEEecCceeeecCC--CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCC
Q 048062 445 VSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ--GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVEL 522 (686)
Q Consensus 445 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l 522 (686)
+..+.... .+..+..+++|+.+++.++....... ....+++++.++++.+......+..+..+++|+.|++++|...
T Consensus 404 ~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 404 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp CCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred cccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence 98876543 44567788999999999885554432 4455678999999986555555667788999999999998755
Q ss_pred CCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeec
Q 048062 523 PSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWI 600 (686)
Q Consensus 523 ~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 600 (686)
..+... ..+++|++|++++|. +++..+. .+.++++|++|++++ ++++.++... ...+++|++|++
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~---~f~~l~~L~~L~Ls~-N~l~~l~~~~--------~~~l~~L~~L~L 549 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT---AFNSLSSLQVLNMSH-NNFFSLDTFP--------YKCLNSLQVLDY 549 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECTT-SCCCBCCCGG--------GTTCTTCCEEEC
T ss_pred cccCchhhhhccccCEEECCCCc-cCCcChH---HHcCCCCCCEEECCC-CcCCCCChhH--------HhCCCCCCEEEC
Confidence 544332 456899999999997 7644454 788999999999999 4777776532 135679999999
Q ss_pred cccccccccc-cccCCC-CCcCEEeecCCC
Q 048062 601 FNFPNLERLS-SSIVDL-QYLTSLYLLECP 628 (686)
Q Consensus 601 ~~~~~L~~l~-~~~~~l-~~L~~L~i~~c~ 628 (686)
++ +.++.++ ..+..+ ++|+.|+++++|
T Consensus 550 s~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 550 SL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99 5666664 455666 589999999865
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5.8e-25 Score=236.92 Aligned_cols=348 Identities=17% Similarity=0.182 Sum_probs=191.9
Q ss_pred hcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhh
Q 048062 118 HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 196 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (686)
.++++++|++.+|.... +.+..+++|++|++++|.....+. +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L--------------------------- 95 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDI--------------------------- 95 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE---------------------------
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEE---------------------------
Confidence 47788888888776444 566777888888888765443322 2333333333
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCcc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLR 276 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 276 (686)
++++|.+...++ +..+++|++|++++|. ++.++. +..+ ++|++|++++|. +..+|. ++.+++|+
T Consensus 96 -~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~------~~~l----~~L~~L~l~~n~-l~~~~~-~~~l~~L~ 159 (466)
T 1o6v_A 96 -LMNNNQIADITP--LANLTNLTGLTLFNNQ-ITDIDP------LKNL----TNLNRLELSSNT-ISDISA-LSGLTSLQ 159 (466)
T ss_dssp -ECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG------GTTC----TTCSEEEEEEEE-ECCCGG-GTTCTTCS
T ss_pred -ECCCCccccChh--hcCCCCCCEEECCCCC-CCCChH------HcCC----CCCCEEECCCCc-cCCChh-hccCCccc
Confidence 223333333332 3445555555555442 444322 2333 445555555443 233332 44444555
Q ss_pred EEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeecccc
Q 048062 277 EIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCY 356 (686)
Q Consensus 277 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 356 (686)
+|++.+ .+..++.++.+++|+.|++++ |. +..++....+++|+.|++++|.
T Consensus 160 ~L~l~~--~~~~~~~~~~l~~L~~L~l~~--------------------------n~-l~~~~~l~~l~~L~~L~l~~n~ 210 (466)
T 1o6v_A 160 QLSFGN--QVTDLKPLANLTTLERLDISS--------------------------NK-VSDISVLAKLTNLESLIATNNQ 210 (466)
T ss_dssp EEEEEE--SCCCCGGGTTCTTCCEEECCS--------------------------SC-CCCCGGGGGCTTCSEEECCSSC
T ss_pred EeecCC--cccCchhhccCCCCCEEECcC--------------------------Cc-CCCChhhccCCCCCEEEecCCc
Confidence 554432 123333344444444444444 33 3333333334444444444432
Q ss_pred CcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcC
Q 048062 357 NLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDN 436 (686)
Q Consensus 357 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 436 (686)
+..++.... +++|+.|++++| .++. ++ . ...+ ++|++|++++|.... ++. +..
T Consensus 211 -l~~~~~~~~----------l~~L~~L~l~~n-~l~~-~~------~-----l~~l-~~L~~L~l~~n~l~~-~~~-~~~ 263 (466)
T 1o6v_A 211 -ISDITPLGI----------LTNLDELSLNGN-QLKD-IG------T-----LASL-TNLTDLDLANNQISN-LAP-LSG 263 (466)
T ss_dssp -CCCCGGGGG----------CTTCCEEECCSS-CCCC-CG------G-----GGGC-TTCSEEECCSSCCCC-CGG-GTT
T ss_pred -ccccccccc----------cCCCCEEECCCC-Cccc-ch------h-----hhcC-CCCCEEECCCCcccc-chh-hhc
Confidence 222221111 224666666553 3333 11 1 1222 577777777764333 332 677
Q ss_pred CCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEe
Q 048062 437 NTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRI 516 (686)
Q Consensus 437 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l 516 (686)
+++|+.|++++|..... +. +..+++|+.|++++|.+..++. ...+++|+.|++++| .+..++. +..+++|++|++
T Consensus 264 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeEC
Confidence 77888888877755443 22 6677888888888887776665 445678888888886 4444443 678888888888
Q ss_pred cCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCC
Q 048062 517 GKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPL 578 (686)
Q Consensus 517 ~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~ 578 (686)
++| .+..++....+++|++|++++|. +.+..| +..+++|+.|++++| .+..+|.
T Consensus 339 ~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n-~~~~~p~ 392 (466)
T 1o6v_A 339 YNN-KVSDVSSLANLTNINWLSAGHNQ-ISDLTP-----LANLTRITQLGLNDQ-AWTNAPV 392 (466)
T ss_dssp CSS-CCCCCGGGTTCTTCCEEECCSSC-CCBCGG-----GTTCTTCCEEECCCE-EEECCCB
T ss_pred CCC-ccCCchhhccCCCCCEEeCCCCc-cCccch-----hhcCCCCCEEeccCC-cccCCch
Confidence 886 45556555667788888888887 553332 577888889998885 5555554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5.7e-25 Score=236.76 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=46.3
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeec
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEIS 493 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~ 493 (686)
+|++|++++|...+..|..+..+++|++|++++|......|..+..+++|++|++++|.+..++. ....+++|+.|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 45555555544333344444455555555555544444334444444555555555554443322 22333444444444
Q ss_pred cccccccccccccCCCCCCeEEecC
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGK 518 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~ 518 (686)
+|......|..+..+++|++|++++
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcccccChhhccccccccEEECCC
Confidence 4322222233444444444444444
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2e-24 Score=227.35 Aligned_cols=305 Identities=19% Similarity=0.221 Sum_probs=243.4
Q ss_pred chhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccc
Q 048062 190 KLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSS 269 (686)
Q Consensus 190 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~ 269 (686)
.+.+++.++++++.+..++...+..+++|++|++++|. ++.++... +..+ ++|++|++++|......|..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhh----ccCC----CCcCEEECCCCCCCcCCHHHh
Confidence 34566777888888899998888999999999999986 88777632 6667 999999999997533445568
Q ss_pred cCCCCccEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccch-hhhcccCCCccEEeEecCCCCcccccccCCCc
Q 048062 270 LSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQ-AWMCDNNSSLEILKIWDCHSLTYIAGVQLPPS 346 (686)
Q Consensus 270 ~~l~~L~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 346 (686)
+.+++|++|++++|. ++.+|. ++.+++|++|+++++. +..++. .+. .+++|++|+++++. ++.++ ...+++
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~-~~~l~~ 187 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ--ATTSLQNLQLSSNR-LTHVD-LSLIPS 187 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTS--SCTTCCEEECCSSC-CSBCC-GGGCTT
T ss_pred cCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhcc--CCCCCCEEECCCCc-CCccc-cccccc
Confidence 899999999999985 778886 5779999999999964 555544 344 68999999999875 55553 356789
Q ss_pred ccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCC
Q 048062 347 LKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSK 426 (686)
Q Consensus 347 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 426 (686)
|+.|+++++ .+..++. .++|+.|++++ +.++. ++ . ..+++|+.|++++|.
T Consensus 188 L~~L~l~~n-~l~~~~~-------------~~~L~~L~l~~-n~l~~-~~------------~-~~~~~L~~L~l~~n~- 237 (390)
T 3o6n_A 188 LFHANVSYN-LLSTLAI-------------PIAVEELDASH-NSINV-VR------------G-PVNVELTILKLQHNN- 237 (390)
T ss_dssp CSEEECCSS-CCSEEEC-------------CSSCSEEECCS-SCCCE-EE------------C-CCCSSCCEEECCSSC-
T ss_pred cceeecccc-cccccCC-------------CCcceEEECCC-Ceeee-cc------------c-cccccccEEECCCCC-
Confidence 999999875 3444331 23599999999 46665 44 1 223789999999975
Q ss_pred ccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccccccccccccc
Q 048062 427 LESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLH 506 (686)
Q Consensus 427 ~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~ 506 (686)
+... ..+..+++|++|++++|......|..+..+++|+.|++++|.+..+|.....+++|+.|++++| .+..+|..+.
T Consensus 238 l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 315 (390)
T 3o6n_A 238 LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP 315 (390)
T ss_dssp CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred Cccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCcccc
Confidence 4444 4688999999999999988777788899999999999999999999888788889999999996 6778888888
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCc
Q 048062 507 NLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNK 543 (686)
Q Consensus 507 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 543 (686)
.+++|++|++++|+ ++.++ ...+++|++|++++|+
T Consensus 316 ~l~~L~~L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 316 QFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSC
T ss_pred ccCcCCEEECCCCc-cceeC-chhhccCCEEEcCCCC
Confidence 99999999999965 56665 4456799999999988
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1e-24 Score=234.73 Aligned_cols=362 Identities=15% Similarity=0.133 Sum_probs=226.3
Q ss_pred ccchhcccceeeeccCCcccc---cccCCCCcceEEEEcCccce-eEccccccCCCcceeecccCcchhhccCCCCCCcc
Q 048062 114 TRTKHLLALEKLVIEGCEELS---VSISSLPALCKFIIGGCKKV-VWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLP 189 (686)
Q Consensus 114 ~~p~~l~~L~~L~l~~c~~~~---~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~ 189 (686)
.+|...++|++|+++++.... ..++.+++|++|++++|... .++.. .|.
T Consensus 24 ~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---------------------------~~~ 76 (455)
T 3v47_A 24 QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN---------------------------TFR 76 (455)
T ss_dssp SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT---------------------------TTT
T ss_pred cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc---------------------------ccc
Confidence 344433567777777665433 44666777777777776553 22111 344
Q ss_pred chhhhhhchhhhhhhhcccchhhhcCcCccEeeccccccccc-ccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccc
Q 048062 190 KLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQS 268 (686)
Q Consensus 190 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~ 268 (686)
++++|+.+++++|.+....+..++.+++|++|++++|. ++. ++.. ..+..+ ++|++|++++|......|..
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHS---STTTTC----TTCCEEECCSSBCCSCCCCG
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC-CCccccCc---ccccCc----ccCCEEECCCCccCccCccc
Confidence 55555555666666666666666777777777777775 443 2221 124444 77777777777643333444
Q ss_pred -ccCCCCccEEeccCCCCCccCCC--CCCC--CCCcEEeccccccccccchhhh-------cccCCCccEEeEecCCCCc
Q 048062 269 -SLSLSSLREIEIYKCSSLVSFPE--VALP--SKLKKIQIRECDALKSLPQAWM-------CDNNSSLEILKIWDCHSLT 336 (686)
Q Consensus 269 -~~~l~~L~~L~l~~~~~l~~lp~--~~~l--~~L~~L~l~~~~~l~~l~~~~~-------~~~l~~L~~L~l~~~~~l~ 336 (686)
+..+++|++|++++|. +..++. +..+ .+|+.|+++++. +..++.... ...+++|++|++++|....
T Consensus 149 ~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp GGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred ccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccc
Confidence 5677777777777765 333322 2222 567777777643 333332211 0134667777777765322
Q ss_pred ccccc----cCCCcccEEeeccccCcccccccc---cccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhc
Q 048062 337 YIAGV----QLPPSLKRLEIYLCYNLRTLTVEE---GIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEV 409 (686)
Q Consensus 337 ~~~~~----~~~~~L~~L~l~~c~~l~~l~~~~---~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~ 409 (686)
..+.. ...++|+.|+++++.......... ......+.....++|+.|+++++ .++. .. |..+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~-~~----~~~~----- 295 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-KIFA-LL----KSVF----- 295 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-CCCE-EC----TTTT-----
T ss_pred cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-cccc-cc----hhhc-----
Confidence 22211 223677777777654332211000 00111112233457999999994 5555 22 2332
Q ss_pred cCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeec-CCCCCCCCCcc
Q 048062 410 GNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSF-PQGGLPCAKLM 488 (686)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~ 488 (686)
+.+ ++|++|++++|...+..|..+..+++|++|++++|......+..+..+++|++|++++|.+..+ |.....+++|+
T Consensus 296 ~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 296 SHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 223 7999999999866666677899999999999999987666678889999999999999998877 55677789999
Q ss_pred EEeeccccccccccc-cccCCCCCCeEEecCCCCCCCC
Q 048062 489 RLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSL 525 (686)
Q Consensus 489 ~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~ 525 (686)
+|++++| .++.+|. .+..+++|++|++++|+.....
T Consensus 375 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 375 ELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 9999995 6666665 5688999999999997644433
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7.4e-24 Score=226.37 Aligned_cols=228 Identities=19% Similarity=0.166 Sum_probs=134.5
Q ss_pred chhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCcc
Q 048062 209 DGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVS 288 (686)
Q Consensus 209 ~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~ 288 (686)
...++.+++|++|++++|. ++.+|. +..+ ++|++|++++|. +..+| ++.+++|++|++++|. ++.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~-l~~~~~------l~~l----~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~-l~~ 99 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSS-ITDMTG------IEKL----TGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNK-LTN 99 (457)
T ss_dssp EEEHHHHTTCCEEECCSSC-CCCCTT------GGGC----TTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC-CSC
T ss_pred ccChhHcCCCCEEEccCCC-cccChh------hccc----CCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCC-Cce
Confidence 3345677888888888774 666652 5555 788888888875 45565 6777888888888875 666
Q ss_pred CCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCccccccccccc
Q 048062 289 FPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQ 368 (686)
Q Consensus 289 lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~ 368 (686)
++ ++.+++|++|+++++ .++.++ + ..+++|++|+++++. ++.++ ...+++|+.|+++++..+..++ ...
T Consensus 100 ~~-~~~l~~L~~L~L~~N-~l~~l~--~--~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~-~~~-- 168 (457)
T 3bz5_A 100 LD-VTPLTKLTYLNCDTN-KLTKLD--V--SQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLD-VTP-- 168 (457)
T ss_dssp CC-CTTCTTCCEEECCSS-CCSCCC--C--TTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCC-CTT--
T ss_pred ee-cCCCCcCCEEECCCC-cCCeec--C--CCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccc-ccc--
Confidence 65 677788888888775 455554 2 257778888877764 44443 3455666777766665444432 111
Q ss_pred ccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeeccc
Q 048062 369 CSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFC 448 (686)
Q Consensus 369 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~ 448 (686)
+++|+.|++++ +.++. ++ .+.+ ++|+.|++++|. ++.++ +..+++|+.|++++|
T Consensus 169 --------l~~L~~L~ls~-n~l~~-l~------------l~~l-~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 169 --------QTQLTTLDCSF-NKITE-LD------------VSQN-KLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSN 222 (457)
T ss_dssp --------CTTCCEEECCS-SCCCC-CC------------CTTC-TTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSS
T ss_pred --------CCcCCEEECCC-Cccce-ec------------cccC-CCCCEEECcCCc-CCeec--cccCCCCCEEECcCC
Confidence 23466666666 34444 33 2222 456666666643 33332 555666666666665
Q ss_pred CCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 449 RNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 449 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
.... +| +..+++|+.|++++|.+..+|. ..+++|+.|+++
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~ 262 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELDV--STLSKLTTLHCI 262 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCCC--TTCTTCCEEECT
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcCH--HHCCCCCEEecc
Confidence 4433 33 5555666666666665555542 223344444443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.9e-24 Score=221.43 Aligned_cols=301 Identities=19% Similarity=0.218 Sum_probs=151.3
Q ss_pred hcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCC
Q 048062 213 QDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEV 292 (686)
Q Consensus 213 ~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~ 292 (686)
..+++|++|+++++. +..++. +..+ ++|++|++++|. +..+|. +..+++|++|++++|. ++.++.+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~~------~~~~----~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQG------IEYL----TNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTNK-ITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCTT------GGGC----TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGGG
T ss_pred hhcccccEEEEeCCc-cccchh------hhhc----CCccEEEccCCc-cccchh-hhcCCcCCEEEccCCc-ccCchHH
Confidence 345555555555543 444432 3333 555555555553 244444 5555555555555552 4455555
Q ss_pred CCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCccccccccccccccc
Q 048062 293 ALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSS 372 (686)
Q Consensus 293 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 372 (686)
..+++|++|+++++ .+..++. +. .+++|++|++++|..+..++....+++|+.|++++|. +..++....
T Consensus 107 ~~l~~L~~L~l~~n-~i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~------ 175 (347)
T 4fmz_A 107 QNLTNLRELYLNED-NISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIAN------ 175 (347)
T ss_dssp TTCTTCSEEECTTS-CCCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGG------
T ss_pred cCCCcCCEEECcCC-cccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhcc------
Confidence 55555555555553 2333333 21 3555555555555555554444555555555555543 222221111
Q ss_pred ccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcc
Q 048062 373 RRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLK 452 (686)
Q Consensus 373 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~ 452 (686)
+++|+.|++++| .++. ++ . + ..+ ++|+.|++++|.. ..++. +..+++|++|++++|....
T Consensus 176 ----l~~L~~L~l~~n-~l~~-~~-----~-~-----~~l-~~L~~L~l~~n~l-~~~~~-~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 176 ----LTDLYSLSLNYN-QIED-IS-----P-L-----ASL-TSLHYFTAYVNQI-TDITP-VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp ----CTTCSEEECTTS-CCCC-CG-----G-G-----GGC-TTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred ----CCCCCEEEccCC-cccc-cc-----c-c-----cCC-CccceeecccCCC-CCCch-hhcCCcCCEEEccCCccCC
Confidence 234666666553 3333 11 1 1 111 4566666666432 22222 5566666666666654433
Q ss_pred cccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC--CC
Q 048062 453 ILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED--GL 530 (686)
Q Consensus 453 ~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~ 530 (686)
. +. +..+++|++|++++|.+..++. ...+++|+.|++++| .+..++ .+..+++|++|++++|. +...+.. ..
T Consensus 236 ~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~ 309 (347)
T 4fmz_A 236 L-SP-LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGG 309 (347)
T ss_dssp C-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCGGGHHHHHT
T ss_pred C-cc-hhcCCCCCEEECCCCccCCChh-HhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCc-CCCcChhHhhc
Confidence 2 22 5556666666666665555432 334456666666664 444443 35566666666666653 2222211 23
Q ss_pred CCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccC
Q 048062 531 PTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 531 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
+++|++|++++|. +++..+ +..+++|+.|++++|
T Consensus 310 l~~L~~L~L~~n~-l~~~~~-----~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 310 LTNLTTLFLSQNH-ITDIRP-----LASLSKMDSADFANQ 343 (347)
T ss_dssp CTTCSEEECCSSS-CCCCGG-----GGGCTTCSEESSSCC
T ss_pred cccCCEEEccCCc-cccccC-----hhhhhccceeehhhh
Confidence 4566666666665 442221 455666666766664
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.2e-24 Score=219.44 Aligned_cols=302 Identities=17% Similarity=0.177 Sum_probs=183.5
Q ss_pred hcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhh
Q 048062 118 HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 196 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (686)
.+++|++|++++|.... +.+..+++|++|++++|.....+. +..+++|++|.
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~-------------------------- 94 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLY-------------------------- 94 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE--------------------------
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEE--------------------------
Confidence 57888888888876555 667788889999988886655444 55566666663
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCcc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLR 276 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 276 (686)
+++|.+..++ .+..+++|++|++++|. ++.++. +..+ ++|++|++++|..+..++. +..+++|+
T Consensus 95 --L~~n~i~~~~--~~~~l~~L~~L~l~~n~-i~~~~~------~~~l----~~L~~L~l~~n~~~~~~~~-~~~l~~L~ 158 (347)
T 4fmz_A 95 --IGTNKITDIS--ALQNLTNLRELYLNEDN-ISDISP------LANL----TKMYSLNLGANHNLSDLSP-LSNMTGLN 158 (347)
T ss_dssp --CCSSCCCCCG--GGTTCTTCSEEECTTSC-CCCCGG------GTTC----TTCCEEECTTCTTCCCCGG-GTTCTTCC
T ss_pred --ccCCcccCch--HHcCCCcCCEEECcCCc-ccCchh------hccC----CceeEEECCCCCCcccccc-hhhCCCCc
Confidence 3333333332 24566666666666664 555433 3334 6666666666654444333 56666666
Q ss_pred EEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeecccc
Q 048062 277 EIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCY 356 (686)
Q Consensus 277 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 356 (686)
+|++++|. +..++.+..+++|+.|++++| .+..++. +. .+++|+.|+++++. +..++....+++|++|++++|.
T Consensus 159 ~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 159 YLTVTESK-VKDVTPIANLTDLYSLSLNYN-QIEDISP-LA--SLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp EEECCSSC-CCCCGGGGGCTTCSEEECTTS-CCCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSC
T ss_pred EEEecCCC-cCCchhhccCCCCCEEEccCC-ccccccc-cc--CCCccceeecccCC-CCCCchhhcCCcCCEEEccCCc
Confidence 66666664 455555566666666666664 3444443 22 46666666666653 4444444556666666666643
Q ss_pred CcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcC
Q 048062 357 NLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDN 436 (686)
Q Consensus 357 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 436 (686)
+..++. +. .+++|++|++++| .++. ++ . ...+ ++|++|++++| .+..++ .+..
T Consensus 233 -l~~~~~---~~-------~l~~L~~L~l~~n-~l~~-~~------~-----~~~l-~~L~~L~l~~n-~l~~~~-~~~~ 285 (347)
T 4fmz_A 233 -ITDLSP---LA-------NLSQLTWLEIGTN-QISD-IN------A-----VKDL-TKLKMLNVGSN-QISDIS-VLNN 285 (347)
T ss_dssp -CCCCGG---GT-------TCTTCCEEECCSS-CCCC-CG------G-----GTTC-TTCCEEECCSS-CCCCCG-GGGG
T ss_pred -cCCCcc---hh-------cCCCCCEEECCCC-ccCC-Ch------h-----HhcC-CCcCEEEccCC-ccCCCh-hhcC
Confidence 344431 11 1335777777763 4444 21 1 2222 57777777776 344443 4677
Q ss_pred CCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccc
Q 048062 437 NTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCK 496 (686)
Q Consensus 437 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~ 496 (686)
+++|+.|++++|......+..+..+++|+.|++++|.+..+++ ...+++|+.|++++|.
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 7788888888777666666667777788888888887776655 4556678888887753
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=9.3e-24 Score=225.62 Aligned_cols=353 Identities=15% Similarity=0.155 Sum_probs=201.8
Q ss_pred hcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhh
Q 048062 118 HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 196 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (686)
.+++|++|++++|.... +.++.+++|++|++++|.....+ +..+++|++|.+.+..-..+ .+.++++|+.
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~L~~ 110 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-------DVTPLTKLTY 110 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-------CCTTCTTCCE
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-------ecCCCCcCCE
Confidence 47888888888875444 67778888888888888765542 55566666664444321111 2455555666
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCcc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLR 276 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 276 (686)
+++++|.+..++ ++.+++|++|++++|. ++.++ ++.+ ++|++|++++|..+..+ .++.+++|+
T Consensus 111 L~L~~N~l~~l~---~~~l~~L~~L~l~~N~-l~~l~-------l~~l----~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 111 LNCDTNKLTKLD---VSQNPLLTYLNCARNT-LTEID-------VSHN----TQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp EECCSSCCSCCC---CTTCTTCCEEECTTSC-CSCCC-------CTTC----TTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred EECCCCcCCeec---CCCCCcCCEEECCCCc-cceec-------cccC----CcCCEEECCCCCccccc--ccccCCcCC
Confidence 666666555543 4556666666666553 44442 2233 55666666665444444 245556666
Q ss_pred EEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeecccc
Q 048062 277 EIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCY 356 (686)
Q Consensus 277 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~ 356 (686)
+|++++|. ++.+| ++.+++|+.|+++++ .++.++ + ..+++|++|+++++. ++.++ ...+++|+.|+++++
T Consensus 174 ~L~ls~n~-l~~l~-l~~l~~L~~L~l~~N-~l~~~~--l--~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~~N- 243 (457)
T 3bz5_A 174 TLDCSFNK-ITELD-VSQNKLLNRLNCDTN-NITKLD--L--NQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCSVN- 243 (457)
T ss_dssp EEECCSSC-CCCCC-CTTCTTCCEEECCSS-CCSCCC--C--TTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSS-
T ss_pred EEECCCCc-cceec-cccCCCCCEEECcCC-cCCeec--c--ccCCCCCEEECcCCc-ccccC-ccccCCCCEEEeeCC-
Confidence 66666653 45554 555566666666553 233332 2 245566666665543 44444 344455555555553
Q ss_pred CcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcC
Q 048062 357 NLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDN 436 (686)
Q Consensus 357 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~ 436 (686)
.++.++. .. +++|+.|+++. .+|+.|++++|...+.+| .+.
T Consensus 244 ~l~~~~~-~~----------l~~L~~L~l~~--------------------------n~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 244 PLTELDV-ST----------LSKLTTLHCIQ--------------------------TDLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp CCSCCCC-TT----------CTTCCEEECTT--------------------------CCCSCCCCTTCTTCCEEE--CTT
T ss_pred cCCCcCH-HH----------CCCCCEEeccC--------------------------CCCCEEECCCCccCCccc--ccc
Confidence 2333320 11 12344444433 356777777777666666 567
Q ss_pred CCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEe
Q 048062 437 NTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRI 516 (686)
Q Consensus 437 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l 516 (686)
+++|+.|++++|..++.+|. ..++|+.|++++| ++|+.|++++| .++.++ +..+++|+.|++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNT-ELTELD--VSHNTKLKSLSC 346 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTC-CCSCCC--CTTCTTCSEEEC
T ss_pred cccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCC-cccccc--cccCCcCcEEEC
Confidence 78888888888877776664 2345555555443 47788888774 555553 777888888888
Q ss_pred cCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCce-EcCCCc
Q 048062 517 GKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVV-SFPLKA 580 (686)
Q Consensus 517 ~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~-~~~~~~ 580 (686)
+++ .++.+ +.|..|++.+|. +.+ ...+..|+.+++++ ++++ .+|...
T Consensus 347 ~~N-~l~~l------~~L~~L~l~~n~-l~g--------~~~~~~l~~l~l~~-N~l~g~ip~~~ 394 (457)
T 3bz5_A 347 VNA-HIQDF------SSVGKIPALNNN-FEA--------EGQTITMPKETLTN-NSLTIAVSPDL 394 (457)
T ss_dssp CSS-CCCBC------TTGGGSSGGGTS-EEE--------EEEEEECCCBCCBT-TBEEEECCTTC
T ss_pred CCC-CCCCc------cccccccccCCc-EEe--------cceeeecCcccccc-CcEEEEcChhH
Confidence 874 44443 456666666554 321 12345566667776 3443 455543
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-23 Score=234.04 Aligned_cols=305 Identities=19% Similarity=0.223 Sum_probs=245.0
Q ss_pred chhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccc
Q 048062 190 KLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSS 269 (686)
Q Consensus 190 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~ 269 (686)
.+.+++.+++++|.+..+++..+..+++|++|++++|. ++.++... +..+ ++|++|++++|......|..+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA----FAYA----HTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT----TTTC----TTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHH----hcCC----CCCCEEECCCCcCCCCCHHHH
Confidence 34566677888888899999889999999999999986 88877632 6677 999999999997533344457
Q ss_pred cCCCCccEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccch-hhhcccCCCccEEeEecCCCCcccccccCCCc
Q 048062 270 LSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQ-AWMCDNNSSLEILKIWDCHSLTYIAGVQLPPS 346 (686)
Q Consensus 270 ~~l~~L~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 346 (686)
+.+++|++|++++|. ++.+|. ++.+++|++|++++|. +..++. .+. .+++|++|++++|. ++.++ ...+++
T Consensus 120 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--~l~~L~~L~L~~N~-l~~~~-~~~l~~ 193 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ--ATTSLQNLQLSSNR-LTHVD-LSLIPS 193 (597)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTT--TCTTCCEEECTTSC-CSBCC-GGGCTT
T ss_pred cCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhh--cCCcCcEEECcCCC-CCCcC-hhhhhh
Confidence 899999999999985 778876 5789999999999964 445444 454 68999999999875 66554 356789
Q ss_pred ccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCC
Q 048062 347 LKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSK 426 (686)
Q Consensus 347 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~ 426 (686)
|+.|+++++ .+..++ ..++|+.|++++ +.+.. ++ +..+++|+.|++++|..
T Consensus 194 L~~L~l~~n-~l~~l~-------------~~~~L~~L~ls~-n~l~~-~~-------------~~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 194 LFHANVSYN-LLSTLA-------------IPIAVEELDASH-NSINV-VR-------------GPVNVELTILKLQHNNL 244 (597)
T ss_dssp CSEEECCSS-CCSEEE-------------CCTTCSEEECCS-SCCCE-EE-------------CSCCSCCCEEECCSSCC
T ss_pred hhhhhcccC-cccccc-------------CCchhheeeccC-Ccccc-cc-------------cccCCCCCEEECCCCCC
Confidence 999999885 344433 123599999999 45665 33 23347899999999754
Q ss_pred ccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccccccccccccc
Q 048062 427 LESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLH 506 (686)
Q Consensus 427 ~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~ 506 (686)
.. +..+..+++|+.|++++|......|..+..+++|+.|++++|.+..+|.....+++|+.|++++| .+..+|..+.
T Consensus 245 ~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~ 321 (597)
T 3oja_B 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQP 321 (597)
T ss_dssp CC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHH
T ss_pred CC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccc
Confidence 43 35788999999999999988888888999999999999999999999988888899999999995 6678998899
Q ss_pred CCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCc
Q 048062 507 NLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNK 543 (686)
Q Consensus 507 ~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 543 (686)
.+++|+.|++++|+ +..++ ...+++|+.|++++|+
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK-LSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC-CCTTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCCC-CCCcC-hhhcCCCCEEEeeCCC
Confidence 99999999999965 55555 4456799999999998
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3e-23 Score=218.31 Aligned_cols=305 Identities=15% Similarity=0.112 Sum_probs=226.7
Q ss_pred CCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCc
Q 048062 139 SLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL 218 (686)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L 218 (686)
.++++++|+++++....++.. .+.++++|+.+++++|.+..+++..+..+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~---------------------------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 95 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAA---------------------------LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 95 (390)
T ss_dssp GGCCCSEEEEESCEESEECTH---------------------------HHHHCCCCSEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChh---------------------------HhcccccCcEEECCCCcccccChhhccCCCCc
Confidence 467899999998876666654 23334444444666667777777777888899
Q ss_pred cEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccc-ccCCCCccEEeccCCCCCccCCC--CCCC
Q 048062 219 KSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE--VALP 295 (686)
Q Consensus 219 ~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~lp~--~~~l 295 (686)
++|++++|. ++.+++.. ++.+ ++|++|++++|. +..+|.. +..+++|++|++++|. +..+++ ++.+
T Consensus 96 ~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 164 (390)
T 3o6n_A 96 QKLYMGFNA-IRYLPPHV----FQNV----PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQAT 164 (390)
T ss_dssp CEEECCSSC-CCCCCTTT----TTTC----TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSC
T ss_pred CEEECCCCC-CCcCCHHH----hcCC----CCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCC
Confidence 999998885 77776532 5666 889999998885 4677766 4788899999998885 555553 6778
Q ss_pred CCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccc
Q 048062 296 SKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRY 375 (686)
Q Consensus 296 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 375 (686)
++|++|+++++ .++.++. ..+++|++|+++++. +..+ ..+++|+.|+++++ .+..++ ...
T Consensus 165 ~~L~~L~l~~n-~l~~~~~----~~l~~L~~L~l~~n~-l~~~---~~~~~L~~L~l~~n-~l~~~~--~~~-------- 224 (390)
T 3o6n_A 165 TSLQNLQLSSN-RLTHVDL----SLIPSLFHANVSYNL-LSTL---AIPIAVEELDASHN-SINVVR--GPV-------- 224 (390)
T ss_dssp TTCCEEECCSS-CCSBCCG----GGCTTCSEEECCSSC-CSEE---ECCSSCSEEECCSS-CCCEEE--CCC--------
T ss_pred CCCCEEECCCC-cCCcccc----ccccccceeeccccc-cccc---CCCCcceEEECCCC-eeeecc--ccc--------
Confidence 88999999885 4555432 247889999988764 4443 45678999999885 455554 222
Q ss_pred cCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccc
Q 048062 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILP 455 (686)
Q Consensus 376 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 455 (686)
.++|+.|+++++ .++. . .+ .+.+ ++|++|++++|...+..|..+..+++|++|++++|.. ..+|
T Consensus 225 -~~~L~~L~l~~n-~l~~-~------~~-----l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~ 288 (390)
T 3o6n_A 225 -NVELTILKLQHN-NLTD-T------AW-----LLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALN 288 (390)
T ss_dssp -CSSCCEEECCSS-CCCC-C------GG-----GGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEE
T ss_pred -cccccEEECCCC-CCcc-c------HH-----HcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccC
Confidence 236999999984 5554 2 12 2333 7899999999866666688899999999999999755 4466
Q ss_pred ccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCC
Q 048062 456 SGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 456 ~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 520 (686)
..+..+++|+.|++++|.+..+|.....+++|+.|++++| .+..++ +..+++|+.|++++|+
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 6677899999999999999888877777789999999995 566665 7789999999999975
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.2e-22 Score=216.49 Aligned_cols=273 Identities=21% Similarity=0.225 Sum_probs=155.4
Q ss_pred ccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc
Q 048062 188 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ 267 (686)
Q Consensus 188 l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~ 267 (686)
|.++++|+.+++++|.+..+.+..+..+++|++|++++|. ++.+|... +..+ ++|++|++++|......|.
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~Ls~n~i~~~~~~ 122 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV----FTGL----SNLTKLDISENKIVILLDY 122 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTS----STTC----TTCCEEECTTSCCCEECTT
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCccc----ccCC----CCCCEEECCCCccccCChh
Confidence 3334444444555555555555556666777777776664 66665431 3444 6677777776654333455
Q ss_pred cccCCCCccEEeccCCCCCccCC--CCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cC
Q 048062 268 SSLSLSSLREIEIYKCSSLVSFP--EVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QL 343 (686)
Q Consensus 268 ~~~~l~~L~~L~l~~~~~l~~lp--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~ 343 (686)
.+..+++|++|++++|. +..++ .+..+++|+.|++++| .++.++.... ..+++|+.|+++++. +..++.. ..
T Consensus 123 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n~-i~~~~~~~~~~ 198 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRHLN-INAIRDYSFKR 198 (477)
T ss_dssp TTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEESCC-CCEECTTCSCS
T ss_pred HccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCCCc-CcEeChhhccc
Confidence 56666677777776664 44433 2455666666666664 3444443322 246666666666654 3333221 22
Q ss_pred CCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecC
Q 048062 344 PPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGG 423 (686)
Q Consensus 344 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 423 (686)
+++ |+.|++++|+.+.. ++ ... ... .+|++|++++
T Consensus 199 l~~---------------------------------L~~L~l~~~~~~~~-~~-----~~~-----~~~-~~L~~L~l~~ 233 (477)
T 2id5_A 199 LYR---------------------------------LKVLEISHWPYLDT-MT-----PNC-----LYG-LNLTSLSITH 233 (477)
T ss_dssp CTT---------------------------------CCEEEEECCTTCCE-EC-----TTT-----TTT-CCCSEEEEES
T ss_pred Ccc---------------------------------cceeeCCCCccccc-cC-----ccc-----ccC-ccccEEECcC
Confidence 333 45555544433333 22 100 001 3677777777
Q ss_pred CCCccchH-HhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecC-CCCCCCCCccEEeeccccccccc
Q 048062 424 CSKLESIA-ERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFP-QGGLPCAKLMRLEISYCKRLQVL 501 (686)
Q Consensus 424 ~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~l 501 (686)
|. ++.+| ..+..+++|+.|++++|......+..+..+++|+.|++++|.+..++ ..+..+++|+.|++++| .++.+
T Consensus 234 n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 311 (477)
T 2id5_A 234 CN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTL 311 (477)
T ss_dssp SC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCC
T ss_pred Cc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCcee
Confidence 53 33443 45677777777777777655554556677777888888777776553 34455667777777774 45555
Q ss_pred cc-cccCCCCCCeEEecCCC
Q 048062 502 PK-GLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 502 ~~-~l~~l~~L~~L~l~~c~ 520 (686)
+. .+..+++|++|++++|+
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSC
T ss_pred CHhHcCCCcccCEEEccCCC
Confidence 44 45667777777777754
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=225.42 Aligned_cols=305 Identities=15% Similarity=0.112 Sum_probs=228.3
Q ss_pred CCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCc
Q 048062 139 SLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSL 218 (686)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L 218 (686)
.+++++.|+++++....++.. .+.++++|+.+++++|.+..+++..++.+++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~---------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 101 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAA---------------------------LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 101 (597)
T ss_dssp GGCCCSEEEESSCEESEECTH---------------------------HHHHCCCCSEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHH---------------------------HHccCCCCcEEECCCCCCCCCChHHhcCCCCC
Confidence 357888999988776666554 23444445555667777777777778888899
Q ss_pred cEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccc-ccCCCCccEEeccCCCCCccCCC--CCCC
Q 048062 219 KSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE--VALP 295 (686)
Q Consensus 219 ~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~lp~--~~~l 295 (686)
++|++++|. ++.+++.. ++.+ ++|++|++++|. +..+|.. ++.+++|++|++++|. +..+++ ++.+
T Consensus 102 ~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 170 (597)
T 3oja_B 102 QKLYMGFNA-IRYLPPHV----FQNV----PLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQAT 170 (597)
T ss_dssp CEEECCSSC-CCCCCTTT----TTTC----TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTC
T ss_pred CEEECCCCc-CCCCCHHH----HcCC----CCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcC
Confidence 999998886 77776642 5666 889999998885 4677765 4788899999998885 555553 6778
Q ss_pred CCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccc
Q 048062 296 SKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRY 375 (686)
Q Consensus 296 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 375 (686)
++|+.|+++++ .+..++. ..+++|+.|+++++. +..+ ..+++|+.|+++++. +..++ ....
T Consensus 171 ~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~l~~n~-l~~l---~~~~~L~~L~ls~n~-l~~~~--~~~~------- 231 (597)
T 3oja_B 171 TSLQNLQLSSN-RLTHVDL----SLIPSLFHANVSYNL-LSTL---AIPIAVEELDASHNS-INVVR--GPVN------- 231 (597)
T ss_dssp TTCCEEECTTS-CCSBCCG----GGCTTCSEEECCSSC-CSEE---ECCTTCSEEECCSSC-CCEEE--CSCC-------
T ss_pred CcCcEEECcCC-CCCCcCh----hhhhhhhhhhcccCc-cccc---cCCchhheeeccCCc-ccccc--cccC-------
Confidence 88999999885 4555542 247889999988764 4443 456788999998854 55554 2222
Q ss_pred cCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccc
Q 048062 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILP 455 (686)
Q Consensus 376 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 455 (686)
++|+.|++++| .++. . .+ .+.+ ++|+.|++++|...+..|..++.+++|+.|++++|... .+|
T Consensus 232 --~~L~~L~L~~n-~l~~-~------~~-----l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~ 294 (597)
T 3oja_B 232 --VELTILKLQHN-NLTD-T------AW-----LLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294 (597)
T ss_dssp --SCCCEEECCSS-CCCC-C------GG-----GGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEE
T ss_pred --CCCCEEECCCC-CCCC-C------hh-----hccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCC
Confidence 36999999984 5554 1 22 2333 79999999998766666888999999999999997654 467
Q ss_pred ccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCC
Q 048062 456 SGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 456 ~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 520 (686)
..+..+++|+.|++++|.+..+|.....+++|+.|++++| .+..++ +..+++|+.|++++|+
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 7777899999999999999999887777889999999995 455554 6789999999999976
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=9.9e-22 Score=212.63 Aligned_cols=293 Identities=20% Similarity=0.225 Sum_probs=166.2
Q ss_pred cCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCC--CC
Q 048062 216 CSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE--VA 293 (686)
Q Consensus 216 ~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~ 293 (686)
++++.|+++++. ++.++... +..+ ++|++|++++|......|..+..+++|++|++++|. ++.+|. +.
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDE----FASF----PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTT----TTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSST
T ss_pred CCCcEEECCCCc-cceECHhH----ccCC----CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCccccc
Confidence 455555555553 55443321 4444 555666665554322224455555566666665553 444443 34
Q ss_pred CCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEeeccccCcccccccccccccc
Q 048062 294 LPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYLCYNLRTLTVEEGIQCSS 371 (686)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~ 371 (686)
.+++|++|+++++......+..+. .+++|++|+++++. +..+... ..+++|+.|+++++ .++.++. ..+..
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~l~~-- 174 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQ--DLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC-NLTSIPT-EALSH-- 174 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESC-CCSSCCH-HHHTT--
T ss_pred CCCCCCEEECCCCccccCChhHcc--ccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCC-cCcccCh-hHhcc--
Confidence 455666666655432222222332 45566666665543 3333221 33455555555553 2333320 01111
Q ss_pred cccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCc
Q 048062 372 SRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNL 451 (686)
Q Consensus 372 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 451 (686)
+++|+.|++++ +.+.. ++. .. ...+ ++|++|++++|...+.++.......+|+.|++++|...
T Consensus 175 -----l~~L~~L~l~~-n~i~~-~~~----~~-----~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 175 -----LHGLIVLRLRH-LNINA-IRD----YS-----FKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp -----CTTCCEEEEES-CCCCE-ECT----TC-----SCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred -----cCCCcEEeCCC-CcCcE-eCh----hh-----cccC-cccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 33466666666 34443 221 11 1222 67888888888777777766666678888888887554
Q ss_pred ccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC--
Q 048062 452 KILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-- 528 (686)
Q Consensus 452 ~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-- 528 (686)
...+..+..+++|+.|++++|.+..++. ....+++|+.|++++|......|..+..+++|++|++++| .++.++..
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 316 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVF 316 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGB
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHc
Confidence 3322456778888888888887777665 3455678888888885443444567778888888888885 45555543
Q ss_pred CCCCCCceeeccCCc
Q 048062 529 GLPTNLHSLEINSNK 543 (686)
Q Consensus 529 ~~~~~L~~L~l~~~~ 543 (686)
..+++|++|++++|+
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 335678888887776
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.6e-22 Score=225.36 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=87.4
Q ss_pred eeeccCCcccc--cccCCCCcceEEEEcCccceeEc----cccccCCCcceeecccCcchhhccCCCCCCccchhhhhhc
Q 048062 124 KLVIEGCEELS--VSISSLPALCKFIIGGCKKVVWR----SATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELILS 197 (686)
Q Consensus 124 ~L~l~~c~~~~--~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l 197 (686)
.+.+.+|.... ..+..+++|++|++++|...... ...+.+. ..++. ..+..+++|+.+
T Consensus 54 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~------------~~~l~----~l~~~~~~L~~L 117 (592)
T 3ogk_B 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV------------TPWVT----EISNNLRQLKSV 117 (592)
T ss_dssp EEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC------------HHHHH----HHHHHCTTCCEE
T ss_pred EEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccc------------hHHHH----HHHhhCCCCCeE
Confidence 44555553332 34557888999999987654311 0000000 00000 011134444444
Q ss_pred hhhhhhhhcccchhhhc-CcC-ccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcc----ccccccC
Q 048062 198 TKEQTYIWKSHDGLLQD-ICS-LKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVK----LPQSSLS 271 (686)
Q Consensus 198 ~l~~n~~~~~~~~~~~~-~~~-L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~----~p~~~~~ 271 (686)
+++++.+.......+.. +++ |++|++++|..+.. ..+..+...+++|++|++++|..... ++.....
T Consensus 118 ~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp EEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred EeeccEecHHHHHHHHHhccccCcEEECcCCCCcCH-------HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 55555444333333333 334 77777766653221 22333333446777777776643111 2223345
Q ss_pred CCCccEEeccCCCCCc-----cCCC-CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEec
Q 048062 272 LSSLREIEIYKCSSLV-----SFPE-VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWD 331 (686)
Q Consensus 272 l~~L~~L~l~~~~~l~-----~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~ 331 (686)
+++|++|++++|. +. .++. +..+++|+.|++++|. +..++..+. .+++|++|++..
T Consensus 191 ~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~--~~~~L~~L~l~~ 252 (592)
T 3ogk_B 191 NTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFK--AAANLEEFCGGS 252 (592)
T ss_dssp CCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHH--HCTTCCEEEECB
T ss_pred CCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHh--hhhHHHhhcccc
Confidence 6677777776654 32 1222 2346667777776643 334454444 466666666654
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=6.4e-20 Score=188.14 Aligned_cols=150 Identities=15% Similarity=0.226 Sum_probs=90.1
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEee
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEI 492 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l 492 (686)
++|++|++++| .++.+|..+. ++|++|++++|......+..+..+++|+.|++++|.+..++. ....+++|+.|++
T Consensus 171 ~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 171 KKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 46666666664 3444443332 667777777766555545666677777777777776666554 3445567777777
Q ss_pred ccccccccccccccCCCCCCeEEecCCCCCCCCCCCCC--------CCCCceeeccCCcchhhhhhhcccccCCCCCccE
Q 048062 493 SYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGL--------PTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQ 564 (686)
Q Consensus 493 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~ 564 (686)
++| .+..+|..+..+++|++|++++| .++.++...+ .++++.|++.+|+-....++. ..+..+++++.
T Consensus 248 ~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~--~~f~~~~~l~~ 323 (330)
T 1xku_A 248 NNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP--STFRCVYVRAA 323 (330)
T ss_dssp CSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG--GGGTTCCCGGG
T ss_pred CCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCc--cccccccceeE
Confidence 774 55567777777777777777774 3555544322 356777777777732212222 35666777777
Q ss_pred EEeccC
Q 048062 565 LTIINC 570 (686)
Q Consensus 565 L~i~~c 570 (686)
++++++
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 777663
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=5.1e-20 Score=189.00 Aligned_cols=282 Identities=17% Similarity=0.179 Sum_probs=145.0
Q ss_pred CccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccc-cccccCCCCccEEeccCCCCCccC-CC-CC
Q 048062 217 SLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL-PQSSLSLSSLREIEIYKCSSLVSF-PE-VA 293 (686)
Q Consensus 217 ~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~-p~~~~~l~~L~~L~l~~~~~l~~l-p~-~~ 293 (686)
+++.++++++. ++.+|.. .+++|++|++++|.. ..+ |..+..+++|++|++++|. ++.+ |. ++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~-----------~~~~l~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 99 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKE-----------ISPDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS 99 (332)
T ss_dssp ETTEEECCSSC-CSSCCSC-----------CCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCEECGGGST
T ss_pred cCCEEECCCCC-ccccCCC-----------CCCCCeEEECCCCcC-CccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh
Confidence 56777776664 6666654 125677777777653 444 3456677777777777764 4444 22 55
Q ss_pred CCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEeeccccCccccccc-cccccc
Q 048062 294 LPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYLCYNLRTLTVE-EGIQCS 370 (686)
Q Consensus 294 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~ 370 (686)
.+++|++|+++++ .++.+|..+. ++|++|+++++. ++.++.. ..+++|+.|+++++. ++..+.. ..+.
T Consensus 100 ~l~~L~~L~L~~n-~l~~l~~~~~----~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~-- 170 (332)
T 2ft3_A 100 PLRKLQKLYISKN-HLVEIPPNLP----SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFD-- 170 (332)
T ss_dssp TCTTCCEEECCSS-CCCSCCSSCC----TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSC--
T ss_pred CcCCCCEEECCCC-cCCccCcccc----ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCc-cccCCCCccccc--
Confidence 5667777777663 3445554332 566666666643 4444332 334555555555432 2111000 0000
Q ss_pred ccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCC
Q 048062 371 SSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRN 450 (686)
Q Consensus 371 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 450 (686)
..+|+.|++++ +.++ .+|..+. ++|++|++++|..
T Consensus 171 ------~l~L~~L~l~~-n~l~------------------------------------~l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 171 ------GLKLNYLRISE-AKLT------------------------------------GIPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp ------SCCCSCCBCCS-SBCS------------------------------------SCCSSSC--SSCSCCBCCSSCC
T ss_pred ------CCccCEEECcC-CCCC------------------------------------ccCcccc--CCCCEEECCCCcC
Confidence 00244444444 2233 2332221 4455555555444
Q ss_pred cccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCCC
Q 048062 451 LKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDG 529 (686)
Q Consensus 451 ~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 529 (686)
....+..+..+++|+.|++++|.+..++. ....+++|+.|++++| .+..+|..+..+++|++|++++| .++.++...
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhH
Confidence 33333445555555555555555554443 2334456666666653 44455555666666666666663 344443321
Q ss_pred --------CCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccC
Q 048062 530 --------LPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 530 --------~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
..++|+.|++.+|+.....++. ..+..+++|+.++++++
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCc--ccccccchhhhhhcccc
Confidence 1356778888887732212222 35677788888888775
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=4.9e-23 Score=229.51 Aligned_cols=347 Identities=14% Similarity=0.063 Sum_probs=215.7
Q ss_pred chhhhhhchhhhhhhhccc----chhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccc
Q 048062 190 KLEELILSTKEQTYIWKSH----DGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKL 265 (686)
Q Consensus 190 ~l~~L~~l~l~~n~~~~~~----~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~ 265 (686)
.+++|+.+++++|.+.+.. ......+++|++|+++++. ++.+... .+..+...+++|++|++++|.. ..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~----~l~~~~~~~~~L~~L~L~~~~~-~~l 235 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPK----DLETIARNCRSLVSVKVGDFEI-LEL 235 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHH----HHHHHHHHCTTCCEEECSSCBG-GGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHH----HHHHHHhhCCCCcEEeccCccH-HHH
Confidence 3444555555555544332 2234678999999998875 5533332 2444444448999999999864 678
Q ss_pred cccccCCCCccEEeccCCCCCcc----CCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCccccc-
Q 048062 266 PQSSLSLSSLREIEIYKCSSLVS----FPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAG- 340 (686)
Q Consensus 266 p~~~~~l~~L~~L~l~~~~~l~~----lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~- 340 (686)
|..+..+++|++|+++.+..... ...+..+++|+.|.++++ ....++..+. .+++|++|++++|. ++....
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~--~~~~L~~L~Ls~~~-l~~~~~~ 311 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFP--FAAQIRKLDLLYAL-LETEDHC 311 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGG--GGGGCCEEEETTCC-CCHHHHH
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHh--hcCCCcEEecCCCc-CCHHHHH
Confidence 88888889999999986432211 123566888999988874 3445555544 57889999999887 544322
Q ss_pred --ccCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccC----------CccccccccCCCchhhhhhhh
Q 048062 341 --VQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISG----------CLSLTCIFSKNELPATLESLE 408 (686)
Q Consensus 341 --~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~~~~~~~~~~~~~~l~ 408 (686)
...+++|++|++.++..-..++ .-.. .+++|++|++++ |+.++. . .+..+
T Consensus 312 ~~~~~~~~L~~L~L~~~~~~~~l~--~~~~-------~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~-------~~~~l- 373 (592)
T 3ogk_B 312 TLIQKCPNLEVLETRNVIGDRGLE--VLAQ-------YCKQLKRLRIERGADEQGMEDEEGLVSQ-R-------GLIAL- 373 (592)
T ss_dssp HHHTTCTTCCEEEEEGGGHHHHHH--HHHH-------HCTTCCEEEEECCCCSSTTSSTTCCCCH-H-------HHHHH-
T ss_pred HHHHhCcCCCEEeccCccCHHHHH--HHHH-------hCCCCCEEEeecCccccccccccCccCH-H-------HHHHH-
Confidence 2667899999987432111111 1111 145699999995 777665 1 11111
Q ss_pred ccCCCCCCceEEecCCCCccchHHhhcC-CCCCCeeeecc---cCCcccc------cccccCCCCCcEEEecCce--ee-
Q 048062 409 VGNLPPSLKSLRVGGCSKLESIAERLDN-NTSLETIAVSF---CRNLKIL------PSGLHNLRQLQEIGIWECD--LV- 475 (686)
Q Consensus 409 ~~~~~~~L~~L~l~~~~~~~~l~~~l~~-l~~L~~L~l~~---~~~~~~~------~~~l~~l~~L~~L~l~~~~--l~- 475 (686)
...+ ++|++|+++.+......+..+.. +++|++|++++ |+.++.. +..+..+++|+.|++++|. +.
T Consensus 374 ~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 374 AQGC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HhhC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 1123 78999999654443444555554 89999999984 4455442 2235568899999997652 32
Q ss_pred -ecCCCCCCCCCccEEeeccccccc-cccccccCCCCCCeEEecCCCCCCCC--CC-CCCCCCCceeeccCCcchhhhhh
Q 048062 476 -SFPQGGLPCAKLMRLEISYCKRLQ-VLPKGLHNLTSLQQLRIGKGVELPSL--EE-DGLPTNLHSLEINSNKEIWKSMI 550 (686)
Q Consensus 476 -~l~~~~~~~~~L~~L~l~~~~~l~-~l~~~l~~l~~L~~L~l~~c~~l~~~--~~-~~~~~~L~~L~l~~~~~l~~~~~ 550 (686)
.+......+++|+.|++++|.... .++..+..+++|++|++++|+ ++.. +. ...+++|++|++++|. +++...
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~ 530 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQ 530 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCT
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHH
Confidence 122222346689999999865322 345556788999999999987 4321 11 1236789999999998 653322
Q ss_pred hcccccCCCCCccEEEecc
Q 048062 551 ERGRGFHRFSSLRQLTIIN 569 (686)
Q Consensus 551 ~~~~~l~~l~~L~~L~i~~ 569 (686)
. .....++.+....+..
T Consensus 531 ~--~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 531 D--LMQMARPYWNIELIPS 547 (592)
T ss_dssp T--GGGGCCTTEEEEEECC
T ss_pred H--HHHHhCCCcEEEEecC
Confidence 1 1334566666665554
No 45
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=3e-22 Score=223.24 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=62.3
Q ss_pred cCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcc----ccccccCCCCccEEeccCCC-CCc-
Q 048062 214 DICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVK----LPQSSLSLSSLREIEIYKCS-SLV- 287 (686)
Q Consensus 214 ~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~----~p~~~~~l~~L~~L~l~~~~-~l~- 287 (686)
.+++|++|++++|..++. ..+..+...+++|++|++++|..... ++.....+++|++|++++|. .+.
T Consensus 128 ~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFST-------DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HCTTCCEEEEESCEEEEH-------HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred hCCCCcEEeCCCcCCCCH-------HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 577777777777754543 12333333337777777777752111 22223356677777777764 111
Q ss_pred -cCCC-CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 288 -SFPE-VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 288 -~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
.++. ...+++|++|++++|..++.++..+. .+++|++|++..+.
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~--~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQ--RAPQLEELGTGGYT 246 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH--HCTTCSEEECSBCC
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh--cCCcceEccccccc
Confidence 1111 12357777777777655555555444 56777777766553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.9e-19 Score=183.22 Aligned_cols=128 Identities=15% Similarity=0.136 Sum_probs=79.3
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
++|++|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.+..+|.....+++|+.|+++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 56777777776544444566777777777777777655554556667777777777777777777766667777777777
Q ss_pred cccccccccc-ccc------CCCCCCeEEecCCCCCC-CCCC--CCCCCCCceeeccCC
Q 048062 494 YCKRLQVLPK-GLH------NLTSLQQLRIGKGVELP-SLEE--DGLPTNLHSLEINSN 542 (686)
Q Consensus 494 ~~~~l~~l~~-~l~------~l~~L~~L~l~~c~~l~-~~~~--~~~~~~L~~L~l~~~ 542 (686)
+| .++.++. .+. ..++|+.|++++++... .++. ...+.+++.+++++|
T Consensus 272 ~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 272 NN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 74 4555543 221 24677778887765321 1211 133567777777766
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.4e-20 Score=192.32 Aligned_cols=218 Identities=22% Similarity=0.319 Sum_probs=154.9
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
++++.|+++++ .++.+|..+..+++|++|++++|... .+|..+..+++|++|++++|.+..+|.....+++|+.|+++
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 56777777774 45566766777777777777776554 66777777777777777777777777766667777777777
Q ss_pred cccccccccccccC---------CCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCcc
Q 048062 494 YCKRLQVLPKGLHN---------LTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLR 563 (686)
Q Consensus 494 ~~~~l~~l~~~l~~---------l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~ 563 (686)
+|+.+..+|..+.. +++|++|++++| .++.+|.. +.+++|++|++++|. +. .++. .+..+++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~-~l~~---~l~~l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LS-ALGP---AIHHLPKLE 232 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CC-CCCG---GGGGCTTCC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CC-cCch---hhccCCCCC
Confidence 77777777765543 777888888775 44455542 345677888887776 54 3444 467778888
Q ss_pred EEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCC-CCcCcc
Q 048062 564 QLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEK-GLPSSL 642 (686)
Q Consensus 564 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~L 642 (686)
.|++++|+....+|..++ .+++|++|++++|+.+..+|..+..+++|++|++++|+.+..+|.. +.+++|
T Consensus 233 ~L~Ls~n~~~~~~p~~~~---------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFG---------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp EEECTTCTTCCBCCCCTT---------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred EEECcCCcchhhhHHHhc---------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 888888777777776553 5677888888888888888877778888888888888888887763 235666
Q ss_pred ceeeec
Q 048062 643 LLLIIW 648 (686)
Q Consensus 643 ~~L~i~ 648 (686)
+.+.+.
T Consensus 304 ~~l~l~ 309 (328)
T 4fcg_A 304 CIILVP 309 (328)
T ss_dssp CEEECC
T ss_pred eEEeCC
Confidence 666665
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.2e-19 Score=186.20 Aligned_cols=283 Identities=15% Similarity=0.137 Sum_probs=175.0
Q ss_pred hhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCC
Q 048062 194 LILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLS 273 (686)
Q Consensus 194 L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~ 273 (686)
++.++++++.+..++... .++|++|++++|. ++.++... +..+ ++|++|++++|......|..++.++
T Consensus 35 l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~-i~~~~~~~----~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~ 102 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI---SPDTTLLDLQNND-ISELRKDD----FKGL----QHLYALVLVNNKISKIHEKAFSPLR 102 (332)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCCEEECCSSC-CCEECTTT----TTTC----TTCCEEECCSSCCCEECGGGSTTCT
T ss_pred CCEEECCCCCccccCCCC---CCCCeEEECCCCc-CCccCHhH----hhCC----CCCcEEECCCCccCccCHhHhhCcC
Confidence 444555556666565532 4678888888875 77665532 5666 8888888888764333366778888
Q ss_pred CccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcc--cccc--cCCCcccE
Q 048062 274 SLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTY--IAGV--QLPPSLKR 349 (686)
Q Consensus 274 ~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~--~~~~~L~~ 349 (686)
+|++|++++|. ++.+|.... ++|++|+++++ .+..++.... ..+++|++|+++++. ++. +... ..+ +|+.
T Consensus 103 ~L~~L~L~~n~-l~~l~~~~~-~~L~~L~l~~n-~i~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 103 KLQKLYISKNH-LVEIPPNLP-SSLVELRIHDN-RIRKVPKGVF-SGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp TCCEEECCSSC-CCSCCSSCC-TTCCEEECCSS-CCCCCCSGGG-SSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSC
T ss_pred CCCEEECCCCc-CCccCcccc-ccCCEEECCCC-ccCccCHhHh-CCCccCCEEECCCCc-cccCCCCcccccCC-ccCE
Confidence 88888888875 667765322 78888888885 4555554422 267888888888765 432 1111 223 7888
Q ss_pred EeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccc
Q 048062 350 LEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLES 429 (686)
Q Consensus 350 L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~ 429 (686)
|+++++. ++.+| ..+. ++|++|++++ +.++. .+ +..+ ..+ ++|++|++++|.....
T Consensus 177 L~l~~n~-l~~l~--~~~~---------~~L~~L~l~~-n~i~~-~~----~~~l-----~~l-~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 177 LRISEAK-LTGIP--KDLP---------ETLNELHLDH-NKIQA-IE----LEDL-----LRY-SKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CBCCSSB-CSSCC--SSSC---------SSCSCCBCCS-SCCCC-CC----TTSS-----TTC-TTCSCCBCCSSCCCCC
T ss_pred EECcCCC-CCccC--cccc---------CCCCEEECCC-CcCCc-cC----HHHh-----cCC-CCCCEEECCCCcCCcC
Confidence 8888753 55555 2222 2577788777 45554 22 1121 222 5778888887644444
Q ss_pred hHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCC-------CCCccEEeecccccc--cc
Q 048062 430 IAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLP-------CAKLMRLEISYCKRL--QV 500 (686)
Q Consensus 430 l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~-------~~~L~~L~l~~~~~l--~~ 500 (686)
.+..+..+++|+.|++++|... .+|..+..+++|+.|++++|.++.++..... .++|+.|++.+++.. ..
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 4456777778888888776443 6666677777888888887777766553221 245677777765433 23
Q ss_pred ccccccCCCCCCeEEecCC
Q 048062 501 LPKGLHNLTSLQQLRIGKG 519 (686)
Q Consensus 501 l~~~l~~l~~L~~L~l~~c 519 (686)
.|..+..+++|+.+++++|
T Consensus 312 ~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CGGGGTTBCCSTTEEC---
T ss_pred Ccccccccchhhhhhcccc
Confidence 3445666666666666664
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.2e-20 Score=187.54 Aligned_cols=132 Identities=15% Similarity=0.065 Sum_probs=93.2
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
++|++|++++|...+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|.+...+.....+++|++|+++
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECc
Confidence 3677777777654445666666666 777787777666666677777888888888888776444445556788888888
Q ss_pred cccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchh
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIW 546 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~ 546 (686)
+|.....+|..+..+++|++|++++|+....+|..+.+++|+.+++.+|+.+.
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 86554577777888888888888887654466665566777777777777544
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=2.4e-21 Score=215.97 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=98.4
Q ss_pred CCCceEEecCCCCccc--hHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCc---------eee--ecCCC
Q 048062 414 PSLKSLRVGGCSKLES--IAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWEC---------DLV--SFPQG 480 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~---------~l~--~l~~~ 480 (686)
++|++|++++|. +.. +...+..+++|++|++++|.....++.....+++|++|++++| .+. .+...
T Consensus 289 ~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 567777777765 332 2333556777777777776221122222234667777777332 222 11111
Q ss_pred CCCCCCccEEeeccccccccc-cccc-cCCCCCCeEEec-----CCCCCCCCCCC-------CCCCCCceeeccCCcchh
Q 048062 481 GLPCAKLMRLEISYCKRLQVL-PKGL-HNLTSLQQLRIG-----KGVELPSLEED-------GLPTNLHSLEINSNKEIW 546 (686)
Q Consensus 481 ~~~~~~L~~L~l~~~~~l~~l-~~~l-~~l~~L~~L~l~-----~c~~l~~~~~~-------~~~~~L~~L~l~~~~~l~ 546 (686)
...+++|+.|.+. |+.+... ...+ ..+++|+.|+++ +|+.++..+.. ..+++|++|++++ .++
T Consensus 368 ~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~ 444 (594)
T 2p1m_B 368 SMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLT 444 (594)
T ss_dssp HHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCC
T ss_pred HHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--ccc
Confidence 1224577777543 3444321 1122 246777777777 45555544321 2245677777755 233
Q ss_pred hhhhhcccccCCCCCccEEEeccCCCceEc-CCCcCCCCCCCCCCCccccceeecccccccccc--ccccCCCCCcCEEe
Q 048062 547 KSMIERGRGFHRFSSLRQLTIINCDDVVSF-PLKADDKGSGTTLPLPASLTTLWIFNFPNLERL--SSSIVDLQYLTSLY 623 (686)
Q Consensus 547 ~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l--~~~~~~l~~L~~L~ 623 (686)
+.... .....+++|+.|++++|. +... .... ...+++|++|++++|+. ... ...+..+++|+.|+
T Consensus 445 ~~~~~--~l~~~~~~L~~L~L~~~~-i~~~~~~~l--------~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 445 DKVFE--YIGTYAKKMEMLSVAFAG-DSDLGMHHV--------LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLW 512 (594)
T ss_dssp HHHHH--HHHHHCTTCCEEEEESCC-SSHHHHHHH--------HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEE
T ss_pred HHHHH--HHHHhchhccEeeccCCC-CcHHHHHHH--------HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEe
Confidence 22222 112236667777777653 2110 0000 01235677777777654 221 11224466777777
Q ss_pred ecCCCC
Q 048062 624 LLECPK 629 (686)
Q Consensus 624 i~~c~~ 629 (686)
+++|+.
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 777654
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=3.3e-20 Score=188.29 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=186.5
Q ss_pred CccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecC-CCCccchHHhhcCCCCCCeeeecccCCccccccc
Q 048062 379 LLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGG-CSKLESIAERLDNNTSLETIAVSFCRNLKILPSG 457 (686)
Q Consensus 379 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~-~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~ 457 (686)
+++.|+++++ .++. ...+|..+..+ ++|++|++++ +...+.+|..+.++++|++|++++|.....+|..
T Consensus 51 ~l~~L~L~~~-~l~~---~~~~~~~l~~l------~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 51 RVNNLDLSGL-NLPK---PYPIPSSLANL------PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CEEEEEEECC-CCSS---CEECCGGGGGC------TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred eEEEEECCCC-CccC---CcccChhHhCC------CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 4677777763 3331 00233444333 6889999985 5555577888889999999999998877788888
Q ss_pred ccCCCCCcEEEecCceee-ecCCCCCCCCCccEEeeccccccccccccccCCC-CCCeEEecCCCCCCCCCCC-CCCCCC
Q 048062 458 LHNLRQLQEIGIWECDLV-SFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLT-SLQQLRIGKGVELPSLEED-GLPTNL 534 (686)
Q Consensus 458 l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~-~L~~L~l~~c~~l~~~~~~-~~~~~L 534 (686)
+..+++|++|++++|.+. .+|.....+++|++|++++|.....+|..+..++ +|++|++++|.....++.. ..+ +|
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L 199 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL 199 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CC
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cc
Confidence 888999999999999887 6777777788999999998654447888888887 8999999986543344432 223 39
Q ss_pred ceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccC
Q 048062 535 HSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIV 614 (686)
Q Consensus 535 ~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~ 614 (686)
++|++++|. +.+..+. .+..+++|+.|+++++ .+...+... ..+++|++|+++++.--..+|..+.
T Consensus 200 ~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~N-~l~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 200 AFVDLSRNM-LEGDASV---LFGSDKNTQKIHLAKN-SLAFDLGKV---------GLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp SEEECCSSE-EEECCGG---GCCTTSCCSEEECCSS-EECCBGGGC---------CCCTTCCEEECCSSCCEECCCGGGG
T ss_pred cEEECcCCc-ccCcCCH---HHhcCCCCCEEECCCC-ceeeecCcc---------cccCCCCEEECcCCcccCcCChHHh
Confidence 999999987 5545554 7888999999999995 454333323 2668999999999544447888889
Q ss_pred CCCCcCEEeecCCCCCCcCCCCCCcCccceeeecCChhH
Q 048062 615 DLQYLTSLYLLECPKLKYFPEKGLPSSLLLLIIWECPLI 653 (686)
Q Consensus 615 ~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 653 (686)
.+++|++|++++|+--..+|..+.+++|+.+++.++|.+
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 999999999999765557887767889999999999865
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=2.3e-19 Score=183.14 Aligned_cols=196 Identities=21% Similarity=0.365 Sum_probs=133.5
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCc-eeeecCCCCCC---------
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWEC-DLVSFPQGGLP--------- 483 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~l~~~~~~--------- 483 (686)
++|++|++++|. +..+|..++.+++|++|++++|... .+|..+..+++|++|++++| .+..+|.....
T Consensus 104 ~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 466666666643 3355655666666666666665443 55556666666666666665 33455544332
Q ss_pred CCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCC-CCCCCCCceeeccCCcchhhhhhhcccccCCCCCc
Q 048062 484 CAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEE-DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSL 562 (686)
Q Consensus 484 ~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L 562 (686)
+++|+.|++++| .++.+|..+..+++|++|++++|. +..++. .+.+++|++|++++|.... .+|. .+..+++|
T Consensus 182 l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~-~~p~---~~~~l~~L 255 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALR-NYPP---IFGGRAPL 255 (328)
T ss_dssp STTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCC-BCCC---CTTCCCCC
T ss_pred CCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchh-hhHH---HhcCCCCC
Confidence 567777777774 555667677777777777777754 334433 2345677777777776333 5554 67788889
Q ss_pred cEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecC
Q 048062 563 RQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLE 626 (686)
Q Consensus 563 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~ 626 (686)
+.|++++|+....+|..++ .+++|++|++++|+.+..+|.++..+++|+.+++..
T Consensus 256 ~~L~L~~n~~~~~~p~~~~---------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIH---------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCTTGG---------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECCCCCchhhcchhhh---------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 9999998888888887663 678899999999999999999899999999998875
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.6e-18 Score=188.84 Aligned_cols=255 Identities=27% Similarity=0.319 Sum_probs=153.9
Q ss_pred CccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeE
Q 048062 250 RLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKI 329 (686)
Q Consensus 250 ~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l 329 (686)
+++.|+++++. ++.+|..+. ++|++|++++|. ++.+|. .+++|++|++++| .++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGN-QLTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSC-CCSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCC-cCCcCCC-----CCCCCCEEEC
Confidence 35555555543 245554443 455555555553 444544 3455555555553 2444443 2455666666
Q ss_pred ecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhc
Q 048062 330 WDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEV 409 (686)
Q Consensus 330 ~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~ 409 (686)
++|. ++.++. .+++|+.|+++++ +++.+| ..+ ++|++|++++| .++. ++
T Consensus 109 s~N~-l~~l~~--~l~~L~~L~L~~N-~l~~lp--~~l----------~~L~~L~Ls~N-~l~~-l~------------- 157 (622)
T 3g06_A 109 FSNP-LTHLPA--LPSGLCKLWIFGN-QLTSLP--VLP----------PGLQELSVSDN-QLAS-LP------------- 157 (622)
T ss_dssp CSCC-CCCCCC--CCTTCCEEECCSS-CCSCCC--CCC----------TTCCEEECCSS-CCSC-CC-------------
T ss_pred cCCc-CCCCCC--CCCCcCEEECCCC-CCCcCC--CCC----------CCCCEEECcCC-cCCC-cC-------------
Confidence 5543 444443 4556666666553 344444 222 24777777763 4444 22
Q ss_pred cCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccE
Q 048062 410 GNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMR 489 (686)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~ 489 (686)
..+++|+.|++++| .++.+| ..+++|+.|++++|... .+|. .+++|+.|++++|.+..+|.. +++|+.
T Consensus 158 -~~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~ 225 (622)
T 3g06_A 158 -ALPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLTSLPAL---PSGLKE 225 (622)
T ss_dssp -CCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCC---CTTCCE
T ss_pred -CccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCC-CCCC---ccchhhEEECcCCcccccCCC---CCCCCE
Confidence 12357777777775 455555 45677888888776543 3443 246788888888877777753 357888
Q ss_pred EeeccccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEecc
Q 048062 490 LEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIIN 569 (686)
Q Consensus 490 L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~ 569 (686)
|++++| .++.+| ..+++|+.|++++| .++.+|. .+++|++|++++|. ++ .+|. .+..+++|+.|++++
T Consensus 226 L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~-~lp~---~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 226 LIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LT-RLPE---SLIHLSSETTVNLEG 293 (622)
T ss_dssp EECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CC-SCCG---GGGGSCTTCEEECCS
T ss_pred EEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CC-cCCH---HHhhccccCEEEecC
Confidence 888874 666666 45678888888885 5666766 56788888888886 65 5555 577788888888888
Q ss_pred CC
Q 048062 570 CD 571 (686)
Q Consensus 570 c~ 571 (686)
|+
T Consensus 294 N~ 295 (622)
T 3g06_A 294 NP 295 (622)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.1e-18 Score=191.70 Aligned_cols=263 Identities=25% Similarity=0.282 Sum_probs=167.7
Q ss_pred CcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCC
Q 048062 215 ICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVAL 294 (686)
Q Consensus 215 ~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 294 (686)
..+++.|+++++. ++.+|.. .+++|++|++++|. ++.+|. .+++|++|++++|. ++.+|. .
T Consensus 39 ~~~l~~L~ls~n~-L~~lp~~-----------l~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~ 99 (622)
T 3g06_A 39 NNGNAVLNVGESG-LTTLPDC-----------LPAHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPV--L 99 (622)
T ss_dssp HHCCCEEECCSSC-CSCCCSC-----------CCTTCSEEEECSCC-CSCCCC---CCTTCCEEEECSCC-CSCCCC--C
T ss_pred CCCCcEEEecCCC-cCccChh-----------hCCCCcEEEecCCC-CCCCCC---cCCCCCEEEcCCCc-CCcCCC--C
Confidence 3457777777664 6676654 12577777777774 466665 45677777777764 666665 5
Q ss_pred CCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCccccccccccccccccc
Q 048062 295 PSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRR 374 (686)
Q Consensus 295 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 374 (686)
+++|++|++++| .+..+|. .+++|+.|++++|. ++.++. .+++|+.|++++| .+..++ ....
T Consensus 100 l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~l~--~~~~------ 161 (622)
T 3g06_A 100 PPGLLELSIFSN-PLTHLPA-----LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLP--ALPS------ 161 (622)
T ss_dssp CTTCCEEEECSC-CCCCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCC--CCCT------
T ss_pred CCCCCEEECcCC-cCCCCCC-----CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCC-cCCCcC--CccC------
Confidence 677777777774 4555554 25677777777654 555553 3477777777775 455554 2222
Q ss_pred ccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccc
Q 048062 375 YASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKIL 454 (686)
Q Consensus 375 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~ 454 (686)
+|+.|++++ +.++. ++ ..+++|+.|++++| .+..+|. .+++|+.|++++|... .+
T Consensus 162 ----~L~~L~L~~-N~l~~-l~--------------~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N~l~-~l 216 (622)
T 3g06_A 162 ----ELCKLWAYN-NQLTS-LP--------------MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNNRLT-SL 216 (622)
T ss_dssp ----TCCEEECCS-SCCSC-CC--------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCS-SC
T ss_pred ----CCCEEECCC-CCCCC-Cc--------------ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCCccc-cc
Confidence 477777777 45554 22 12267788888775 3444543 3467778888776433 44
Q ss_pred cccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCC
Q 048062 455 PSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTN 533 (686)
Q Consensus 455 ~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~ 533 (686)
|. .+++|+.|++++|.++.+| ..+++|+.|++++| .++.+|. .+++|+.|++++| .++.+|.. ..+++
T Consensus 217 ~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~ 285 (622)
T 3g06_A 217 PA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSS 285 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCT
T ss_pred CC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccc
Confidence 43 2467888888888777777 23457888888874 6667765 5677888888875 45566543 34677
Q ss_pred CceeeccCCcchhhhhhh
Q 048062 534 LHSLEINSNKEIWKSMIE 551 (686)
Q Consensus 534 L~~L~l~~~~~l~~~~~~ 551 (686)
|+.|++++|+ +.+..+.
T Consensus 286 L~~L~L~~N~-l~~~~~~ 302 (622)
T 3g06_A 286 ETTVNLEGNP-LSERTLQ 302 (622)
T ss_dssp TCEEECCSCC-CCHHHHH
T ss_pred cCEEEecCCC-CCCcCHH
Confidence 8888888887 5444443
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=4.8e-21 Score=206.45 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCceeeccCCcchhhh----hhhcccccCCCCCccEEEeccCCCceEcC-CCcCCCCCCCCC-CCccccceeecccccc
Q 048062 532 TNLHSLEINSNKEIWKS----MIERGRGFHRFSSLRQLTIINCDDVVSFP-LKADDKGSGTTL-PLPASLTTLWIFNFPN 605 (686)
Q Consensus 532 ~~L~~L~l~~~~~l~~~----~~~~~~~l~~l~~L~~L~i~~c~~l~~~~-~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 605 (686)
++|++|++++|. +++. ++. .+..+++|++|++++| .+.... .... ... ...++|++|++++| .
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~---~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-----~~l~~~~~~L~~L~L~~n-~ 381 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSS---VLAQNRFLLELQISNN-RLEDAGVRELC-----QGLGQPGSVLRVLWLADC-D 381 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHH---HHHHCSSCCEEECCSS-BCHHHHHHHHH-----HHHTSTTCCCCEEECTTS-C
T ss_pred ccceeeEcCCCC-CchHHHHHHHH---HHhhCCCccEEEccCC-ccccccHHHHH-----HHHcCCCCceEEEECCCC-C
Confidence 356666666665 3211 222 3455677777777775 333221 1000 000 01357888888885 4
Q ss_pred cc-----ccccccCCCCCcCEEeecCCCCCCc---------CCCCCCcCccceeeecCC
Q 048062 606 LE-----RLSSSIVDLQYLTSLYLLECPKLKY---------FPEKGLPSSLLLLIIWEC 650 (686)
Q Consensus 606 L~-----~l~~~~~~l~~L~~L~i~~c~~l~~---------l~~~~~~~~L~~L~i~~c 650 (686)
++ .++..+..+++|++|++++|+ +.. ++. ...+|+.|.+.++
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~--~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQ--PGCLLEQLVLYDI 437 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS--TTCCCCEEECTTC
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc--CCcchhheeeccc
Confidence 55 567666778888888888864 433 111 1235777766655
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=3.3e-21 Score=207.76 Aligned_cols=129 Identities=26% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCCceEEecCCCCccchHHhhc-----CCCCCCeeeecccCCccc----ccccccCCCCCcEEEecCceeeecC-----C
Q 048062 414 PSLKSLRVGGCSKLESIAERLD-----NNTSLETIAVSFCRNLKI----LPSGLHNLRQLQEIGIWECDLVSFP-----Q 479 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~l~-----~ 479 (686)
++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|++|++++|.+.... .
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 5677777777543222222222 225777777777664432 3444555677777777777554321 1
Q ss_pred C-CCCCCCccEEeeccccccc----cccccccCCCCCCeEEecCCCCCCCCCCC-------CCCCCCceeeccCCc
Q 048062 480 G-GLPCAKLMRLEISYCKRLQ----VLPKGLHNLTSLQQLRIGKGVELPSLEED-------GLPTNLHSLEINSNK 543 (686)
Q Consensus 480 ~-~~~~~~L~~L~l~~~~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-------~~~~~L~~L~l~~~~ 543 (686)
. ....++|+.|++++|.... .+|..+..+++|++|++++|+ +...... ....+|+.|++.++.
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccc
Confidence 1 1124588888888864322 567777788888888888864 3322100 122367777777655
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=5.1e-18 Score=175.68 Aligned_cols=130 Identities=16% Similarity=0.138 Sum_probs=67.2
Q ss_pred hhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc--cc
Q 048062 192 EELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ--SS 269 (686)
Q Consensus 192 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~--~~ 269 (686)
++|+.+++++|.+..+.+..+..+++|++|++++|. ++.++.. .+..+ ++|++|++++|.. ..+|. .+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~----~~~~l----~~L~~L~L~~n~l-~~l~~~~~~ 145 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSS----WFKPL----SSLTFLNLLGNPY-KTLGETSLF 145 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHH----HHTTC----TTCSEEECTTCCC-SSSCSSCSC
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHh----HhCCC----ccCCEEECCCCCC-cccCchhhh
Confidence 333333444455555555555566666666666653 5555442 24444 6666666666543 45554 45
Q ss_pred cCCCCccEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 270 LSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 270 ~~l~~L~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
..+++|++|++++|..++.++. ++.+++|++|+++++......+..+. .+++|++|+++++.
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK--SIQNVSHLILHMKQ 209 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSC
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh--ccccCCeecCCCCc
Confidence 5666666666666544444432 44455666666655432222233333 35555555555543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.8e-17 Score=177.63 Aligned_cols=219 Identities=19% Similarity=0.230 Sum_probs=114.3
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEee
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEI 492 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l 492 (686)
+++++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|.+..++.. +..+++|+.|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4566666666433333344555666666666666544444445555566666666666655555543 333556666666
Q ss_pred ccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEecc
Q 048062 493 SYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIIN 569 (686)
Q Consensus 493 ~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~ 569 (686)
++| .+..++. .+..+++|++|++++|+.+..++.. ..+++|++|++++|. ++ .++ .+..+++|+.|++++
T Consensus 155 ~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~-~~~----~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 155 RNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IK-DMP----NLTPLVGLEELEMSG 227 (452)
T ss_dssp CSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CS-SCC----CCTTCTTCCEEECTT
T ss_pred CCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cc-ccc----cccccccccEEECcC
Confidence 553 3333433 4555666666666665555555443 234556666666655 33 222 245555666666665
Q ss_pred CCCceEc-CCCcCCCCCCCCCCCccccceeecccccccccc-ccccCCCCCcCEEeecCCCCCCcCCCCCC--cCcccee
Q 048062 570 CDDVVSF-PLKADDKGSGTTLPLPASLTTLWIFNFPNLERL-SSSIVDLQYLTSLYLLECPKLKYFPEKGL--PSSLLLL 645 (686)
Q Consensus 570 c~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L 645 (686)
| .+..+ +..+ ..+++|++|++++ +.+..+ +..+..+++|+.|++++| ++..++...+ +++|+.|
T Consensus 228 N-~l~~~~~~~~---------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 228 N-HFPEIRPGSF---------HGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp S-CCSEECGGGG---------TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred C-cCcccCcccc---------cCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence 3 34333 2222 2445566666665 334443 334455666666666664 4555554322 4556666
Q ss_pred eecCCh
Q 048062 646 IIWECP 651 (686)
Q Consensus 646 ~i~~c~ 651 (686)
+++++|
T Consensus 296 ~L~~Np 301 (452)
T 3zyi_A 296 HLHHNP 301 (452)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 666554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=4.8e-17 Score=173.59 Aligned_cols=223 Identities=18% Similarity=0.198 Sum_probs=166.7
Q ss_pred CccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccc
Q 048062 379 LLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGL 458 (686)
Q Consensus 379 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l 458 (686)
+++.|++++ +.++. ++. .. ...+ ++|++|++++|......+..+..+++|++|++++|......+..+
T Consensus 65 ~l~~L~L~~-n~i~~-~~~----~~-----~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 65 NTRLLNLHE-NQIQI-IKV----NS-----FKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp TCSEEECCS-CCCCE-ECT----TT-----TSSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CCcEEEccC-CcCCe-eCH----HH-----hhCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 467777776 45554 221 11 2223 688889998875444445678889999999999876554444568
Q ss_pred cCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCCCCCCCCce
Q 048062 459 HNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHS 536 (686)
Q Consensus 459 ~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 536 (686)
..+++|++|++++|.+..++. .+..+++|+.|++++|+.+..++. .+..+++|++|++++| .++.++....+++|++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~ 211 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDE 211 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCE
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCE
Confidence 888999999999998888876 455678999999999888887776 6788999999999985 5777877777889999
Q ss_pred eeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccc-cCC
Q 048062 537 LEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS-IVD 615 (686)
Q Consensus 537 L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~ 615 (686)
|++++|. ++...+. .+..+++|+.|+++++ .+..++... +..+++|++|++++ +.++.++.. +..
T Consensus 212 L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 212 LDLSGNH-LSAIRPG---SFQGLMHLQKLWMIQS-QIQVIERNA--------FDNLQSLVEINLAH-NNLTLLPHDLFTP 277 (440)
T ss_dssp EECTTSC-CCEECTT---TTTTCTTCCEEECTTC-CCCEECTTS--------STTCTTCCEEECTT-SCCCCCCTTTTSS
T ss_pred EECCCCc-cCccChh---hhccCccCCEEECCCC-ceeEEChhh--------hcCCCCCCEEECCC-CCCCccChhHhcc
Confidence 9999997 6644444 7888999999999984 666665422 13567899999998 577887754 467
Q ss_pred CCCcCEEeecCCC
Q 048062 616 LQYLTSLYLLECP 628 (686)
Q Consensus 616 l~~L~~L~i~~c~ 628 (686)
+++|+.|+++++|
T Consensus 278 l~~L~~L~L~~Np 290 (440)
T 3zyj_A 278 LHHLERIHLHHNP 290 (440)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCC
Confidence 8899999888765
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=4.2e-17 Score=174.05 Aligned_cols=221 Identities=16% Similarity=0.233 Sum_probs=182.4
Q ss_pred CCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEE
Q 048062 412 LPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRL 490 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L 490 (686)
+|++++.|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|.+..++. .+..+++|+.|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 44789999999975544446789999999999999988766666788999999999999999998887 45677899999
Q ss_pred eeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEe
Q 048062 491 EISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTI 567 (686)
Q Consensus 491 ~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i 567 (686)
++++| .+..++. .+..+++|++|++++|+.+..++.. ..+++|++|++++|. ++ .++ .+..+++|+.|++
T Consensus 142 ~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~-~~~----~~~~l~~L~~L~L 214 (440)
T 3zyj_A 142 WLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LR-EIP----NLTPLIKLDELDL 214 (440)
T ss_dssp ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CS-SCC----CCTTCSSCCEEEC
T ss_pred eCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cc-ccc----ccCCCcccCEEEC
Confidence 99995 5666654 7889999999999999988888764 457899999999997 65 444 4788999999999
Q ss_pred ccCCCceEcC-CCcCCCCCCCCCCCccccceeeccccccccccc-cccCCCCCcCEEeecCCCCCCcCCCCCC--cCccc
Q 048062 568 INCDDVVSFP-LKADDKGSGTTLPLPASLTTLWIFNFPNLERLS-SSIVDLQYLTSLYLLECPKLKYFPEKGL--PSSLL 643 (686)
Q Consensus 568 ~~c~~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~-~~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~ 643 (686)
++| .+..++ ..+ ..+++|++|++++ +.++.++ ..+..+++|+.|++++| ++..++...+ +++|+
T Consensus 215 s~N-~l~~~~~~~~---------~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 215 SGN-HLSAIRPGSF---------QGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp TTS-CCCEECTTTT---------TTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCC
T ss_pred CCC-ccCccChhhh---------ccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCC
Confidence 995 677664 444 3678999999999 5677764 45788999999999995 7888887543 68999
Q ss_pred eeeecCCh
Q 048062 644 LLIIWECP 651 (686)
Q Consensus 644 ~L~i~~c~ 651 (686)
.|+++++|
T Consensus 283 ~L~L~~Np 290 (440)
T 3zyj_A 283 RIHLHHNP 290 (440)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 99999987
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=1.5e-18 Score=176.64 Aligned_cols=133 Identities=11% Similarity=0.155 Sum_probs=66.8
Q ss_pred cCCCCCCeeeecccCCcccccccc-cCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCe
Q 048062 435 DNNTSLETIAVSFCRNLKILPSGL-HNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQ 513 (686)
Q Consensus 435 ~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~ 513 (686)
..+++|++|++++|......+..+ ..+++|++|++++|.+..++.... +++|+.|++++ +.+..+|..+..+++|++
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~ 218 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSS-NKLAFMGPEFQSAAGVTW 218 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEECCS-SCCCEECGGGGGGTTCSE
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc-cccCCEEECCC-CcCCcchhhhcccCcccE
Confidence 334444444444443333222322 234555555555555555543322 44666666665 344455555556666666
Q ss_pred EEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCc
Q 048062 514 LRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDV 573 (686)
Q Consensus 514 L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l 573 (686)
|++++| .++.+|.. ..+++|++|++++|+-..+.++. .+..+++|+.|++.+++.+
T Consensus 219 L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~---~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 219 ISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---FFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp EECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHH---HHHTCHHHHHHHHHHHHHH
T ss_pred EECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHH---HHhccccceEEECCCchhc
Confidence 666664 34444432 23456666666666622134443 4556666666666654433
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=176.50 Aligned_cols=226 Identities=17% Similarity=0.126 Sum_probs=141.1
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC--CCCCCCCccEEe
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ--GGLPCAKLMRLE 491 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~ 491 (686)
++|++|++++|...+..+..+..+++|++|++++|......+..+..+++|++|++++|.+..+|. ....+++|+.|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 567777777754333335556777777777777765443322336677777777777777777765 445567777777
Q ss_pred ecccccccccc-ccccCCCCCCeEEecCCCCCCCC-CC-CCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEec
Q 048062 492 ISYCKRLQVLP-KGLHNLTSLQQLRIGKGVELPSL-EE-DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTII 568 (686)
Q Consensus 492 l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~-~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~ 568 (686)
+++|..+..++ ..+..+++|++|++++|. +..+ +. ...+++|++|++++|. +. .++. ..+..+++|+.|+++
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~-~~~~--~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HI-LLLE--IFVDVTSSVECLELR 230 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-ST-THHH--HHHHHTTTEEEEEEE
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cc-cchh--hhhhhcccccEEECC
Confidence 77765555553 466777777777777754 3333 22 1345677777777776 44 3333 234557788888888
Q ss_pred cCCCceEcCCCcCCCCCCCCCCCccccceeecccc----ccccccccccCCCCCcCEEeecCCCCCCcCCCCC--CcCcc
Q 048062 569 NCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNF----PNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKG--LPSSL 642 (686)
Q Consensus 569 ~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L 642 (686)
+| .+..++.... ......+.++.++++++ ..+..+|..+..+++|++|++++| +++.+|... .+++|
T Consensus 231 ~n-~l~~~~~~~l-----~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 231 DT-DLDTFHFSEL-----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSL 303 (353)
T ss_dssp SC-BCTTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CC-cccccccccc-----ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCC
Confidence 74 4443322110 00012344555555553 234456777788999999999986 677888753 37789
Q ss_pred ceeeecCCh
Q 048062 643 LLLIIWECP 651 (686)
Q Consensus 643 ~~L~i~~c~ 651 (686)
++|++++||
T Consensus 304 ~~L~L~~N~ 312 (353)
T 2z80_A 304 QKIWLHTNP 312 (353)
T ss_dssp CEEECCSSC
T ss_pred CEEEeeCCC
Confidence 999998875
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=6.1e-17 Score=173.47 Aligned_cols=222 Identities=23% Similarity=0.264 Sum_probs=173.5
Q ss_pred CccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccc
Q 048062 379 LLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGL 458 (686)
Q Consensus 379 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l 458 (686)
+++.|++++ +.++. ++ +..+ ..+ ++|++|++++|......+..+..+++|++|++++|......+..+
T Consensus 76 ~l~~L~L~~-n~i~~-~~----~~~~-----~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 76 NTRYLNLME-NNIQM-IQ----ADTF-----RHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp TCSEEECCS-SCCCE-EC----TTTT-----TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred CccEEECcC-CcCce-EC----HHHc-----CCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 477777777 45555 22 1222 223 689999999975444446778899999999999987655445568
Q ss_pred cCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCCCCCCCCce
Q 048062 459 HNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHS 536 (686)
Q Consensus 459 ~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 536 (686)
..+++|++|++++|.+..++. .+..+++|+.|++++|+.++.++. .+..+++|++|++++| .++.++....+++|++
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~ 222 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEE 222 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCE
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccE
Confidence 889999999999999988877 456678999999999989988876 5889999999999995 5777787777889999
Q ss_pred eeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCC-CcCCCCCCCCCCCccccceeeccccccccccccc-cC
Q 048062 537 LEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPL-KADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS-IV 614 (686)
Q Consensus 537 L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~ 614 (686)
|++++|. +.+..+. .+..+++|+.|++++| .+..++. .+ ..+++|++|++++ +.++.++.. +.
T Consensus 223 L~Ls~N~-l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~ 287 (452)
T 3zyi_A 223 LEMSGNH-FPEIRPG---SFHGLSSLKKLWVMNS-QVSLIERNAF---------DGLASLVELNLAH-NNLSSLPHDLFT 287 (452)
T ss_dssp EECTTSC-CSEECGG---GGTTCTTCCEEECTTS-CCCEECTTTT---------TTCTTCCEEECCS-SCCSCCCTTSST
T ss_pred EECcCCc-CcccCcc---cccCccCCCEEEeCCC-cCceECHHHh---------cCCCCCCEEECCC-CcCCccChHHhc
Confidence 9999998 6544444 7889999999999995 6666543 33 3568999999999 588888754 56
Q ss_pred CCCCcCEEeecCCC
Q 048062 615 DLQYLTSLYLLECP 628 (686)
Q Consensus 615 ~l~~L~~L~i~~c~ 628 (686)
.+++|+.|++++++
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 78999999999876
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=8.8e-19 Score=178.31 Aligned_cols=262 Identities=13% Similarity=0.108 Sum_probs=155.1
Q ss_pred hhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccE
Q 048062 198 TKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLRE 277 (686)
Q Consensus 198 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~ 277 (686)
+++.+.+.......+..+++|++|++++|. ++.++.. .+..+ ++|++|++++|.. ...+. +..+++|++
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~ 84 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAA----DLAPF----TKLELLNLSSNVL-YETLD-LESLSTLRT 84 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHH----HHTTC----TTCCEEECTTSCC-EEEEE-ETTCTTCCE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHH----HhhCC----CcCCEEECCCCcC-Ccchh-hhhcCCCCE
Confidence 344444444555555566677777777764 6555432 25555 6777777777653 33333 666677777
Q ss_pred EeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccC
Q 048062 278 IEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYN 357 (686)
Q Consensus 278 L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~ 357 (686)
|++++|. ++.++. .++|+.|+++++ .+..++.. .+++|++|+++++. ++.++..
T Consensus 85 L~Ls~n~-l~~l~~---~~~L~~L~l~~n-~l~~~~~~----~~~~L~~L~l~~N~-l~~~~~~---------------- 138 (317)
T 3o53_A 85 LDLNNNY-VQELLV---GPSIETLHAANN-NISRVSCS----RGQGKKNIYLANNK-ITMLRDL---------------- 138 (317)
T ss_dssp EECCSSE-EEEEEE---CTTCCEEECCSS-CCSEEEEC----CCSSCEEEECCSSC-CCSGGGB----------------
T ss_pred EECcCCc-cccccC---CCCcCEEECCCC-ccCCcCcc----ccCCCCEEECCCCC-CCCccch----------------
Confidence 7777664 444442 356666666653 23332211 23445555555443 3222211
Q ss_pred cccccccccccccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCC
Q 048062 358 LRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNN 437 (686)
Q Consensus 358 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l 437 (686)
.+. .+++|+.|++++ +.++. .+ +..+ ...+ ++|++|++++|. ++.++. ...+
T Consensus 139 --------~~~-------~l~~L~~L~Ls~-N~l~~-~~----~~~~----~~~l-~~L~~L~L~~N~-l~~~~~-~~~l 190 (317)
T 3o53_A 139 --------DEG-------CRSRVQYLDLKL-NEIDT-VN----FAEL----AASS-DTLEHLNLQYNF-IYDVKG-QVVF 190 (317)
T ss_dssp --------CTG-------GGSSEEEEECTT-SCCCE-EE----GGGG----GGGT-TTCCEEECTTSC-CCEEEC-CCCC
T ss_pred --------hhh-------ccCCCCEEECCC-CCCCc-cc----HHHH----hhcc-CcCCEEECCCCc-Cccccc-cccc
Confidence 111 123466666666 34444 21 1111 0112 577788887754 444432 3357
Q ss_pred CCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccccc-ccccccccCCCCCCeEEe
Q 048062 438 TSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRL-QVLPKGLHNLTSLQQLRI 516 (686)
Q Consensus 438 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l-~~l~~~l~~l~~L~~L~l 516 (686)
++|++|++++|... .+|..+..+++|+.|++++|.+..+|.....+++|+.|++++|+.. ..++..+..+++|+.|++
T Consensus 191 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred ccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 88888888887554 4555577888899999999988888887777788999999886554 466777888888998888
Q ss_pred cCCCCCCCC
Q 048062 517 GKGVELPSL 525 (686)
Q Consensus 517 ~~c~~l~~~ 525 (686)
.+++.++..
T Consensus 270 ~~~~~l~~~ 278 (317)
T 3o53_A 270 QTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHSS
T ss_pred CCchhccCC
Confidence 866555443
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=7.2e-17 Score=163.45 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=162.7
Q ss_pred CCCCCceEEecCCCCccchHHh-hcCCCCCCeeeecccCCcc--cccccccCCCCCcEEEecCceeeecCCCCCCCCCcc
Q 048062 412 LPPSLKSLRVGGCSKLESIAER-LDNNTSLETIAVSFCRNLK--ILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLM 488 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~ 488 (686)
+|+++++|++++|. ++.+|.. +..+++|++|++++|.... ..+..+..+++|++|++++|.+..+|.....+++|+
T Consensus 26 ~~~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 26 IPSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 34789999999864 5556543 6888999999999876542 224556678899999999998888887777778999
Q ss_pred EEeecccccccccc--ccccCCCCCCeEEecCCCCCCCCCC-CCCCCCCceeeccCCcchhh-hhhhcccccCCCCCccE
Q 048062 489 RLEISYCKRLQVLP--KGLHNLTSLQQLRIGKGVELPSLEE-DGLPTNLHSLEINSNKEIWK-SMIERGRGFHRFSSLRQ 564 (686)
Q Consensus 489 ~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~l~~L~~ 564 (686)
+|+++++ .+..++ ..+..+++|++|++++|......+. ...+++|++|++++|. +.+ .++. .+..+++|++
T Consensus 105 ~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~~l~~L~~ 179 (306)
T 2z66_A 105 HLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPD---IFTELRNLTF 179 (306)
T ss_dssp EEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECS---CCTTCTTCCE
T ss_pred EEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchh---HHhhCcCCCE
Confidence 9999884 455554 3678889999999998753322222 2346799999999997 543 3444 6888999999
Q ss_pred EEeccCCCceEc-CCCcCCCCCCCCCCCccccceeecccccccccccc-ccCCCCCcCEEeecCCCCCCcCCCC---CCc
Q 048062 565 LTIINCDDVVSF-PLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDLQYLTSLYLLECPKLKYFPEK---GLP 639 (686)
Q Consensus 565 L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~---~~~ 639 (686)
|++++| .++.+ +..+ ..+++|++|++++ +.++.++. .+..+++|+.|++++|+ +...+.. .++
T Consensus 180 L~Ls~n-~l~~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~ 247 (306)
T 2z66_A 180 LDLSQC-QLEQLSPTAF---------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFP 247 (306)
T ss_dssp EECTTS-CCCEECTTTT---------TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCC
T ss_pred EECCCC-CcCCcCHHHh---------cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCC-CcccCHHHHHhhh
Confidence 999995 56665 4444 3567899999999 56777654 56789999999999975 4443332 234
Q ss_pred CccceeeecCCh
Q 048062 640 SSLLLLIIWECP 651 (686)
Q Consensus 640 ~~L~~L~i~~c~ 651 (686)
++|++|++++|+
T Consensus 248 ~~L~~L~L~~N~ 259 (306)
T 2z66_A 248 SSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTCC
T ss_pred ccCCEEEccCCC
Confidence 689999999875
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=2.5e-16 Score=159.49 Aligned_cols=129 Identities=21% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcc-cccccccCCCCCcEEEecCceeeec-CCCCCCCCCccEEe
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLK-ILPSGLHNLRQLQEIGIWECDLVSF-PQGGLPCAKLMRLE 491 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~ 491 (686)
++|++|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++|.+..+ |.....+++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 567777777765444455556677777777777766544 4566677777777777777777665 33455566777777
Q ss_pred ecccccccccc-ccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCc
Q 048062 492 ISYCKRLQVLP-KGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNK 543 (686)
Q Consensus 492 l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 543 (686)
+++|. +..++ ..+..+++|++|++++|......+.. ..+++|++|++++|+
T Consensus 206 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 206 MSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 77743 44333 35667777777777775432222221 223467777777665
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3e-17 Score=176.82 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=128.1
Q ss_pred HHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhccc
Q 048062 241 QQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDN 320 (686)
Q Consensus 241 l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 320 (686)
+..+...+++|++|++++|......|..++.+++|++|++++|. ++..++++.+++|++|++++| .+..++.
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~------ 97 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLV------ 97 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSS-EEEEEEE------
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCC-cCCCCCC------
Confidence 55554444689999999986534445678888899999998885 555555666777777777774 3333331
Q ss_pred CCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCc
Q 048062 321 NSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNEL 400 (686)
Q Consensus 321 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 400 (686)
.++|++|++++|. +..++.. .+
T Consensus 98 ~~~L~~L~L~~N~-l~~~~~~-~l-------------------------------------------------------- 119 (487)
T 3oja_A 98 GPSIETLHAANNN-ISRVSCS-RG-------------------------------------------------------- 119 (487)
T ss_dssp CTTCCEEECCSSC-CCCEEEC-CC--------------------------------------------------------
T ss_pred CCCcCEEECcCCc-CCCCCcc-cc--------------------------------------------------------
Confidence 2445555554432 2221110 11
Q ss_pred hhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccccccc-CCCCCcEEEecCceeeecCC
Q 048062 401 PATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLH-NLRQLQEIGIWECDLVSFPQ 479 (686)
Q Consensus 401 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~l~~l~~ 479 (686)
++|+.|++++|......|..++.+++|+.|++++|......|..+. .+++|+.|++++|.+..++.
T Consensus 120 -------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 120 -------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp -------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred -------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 2344444444322222233344444555555554444443333333 45555555555555555443
Q ss_pred CCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCC
Q 048062 480 GGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHR 558 (686)
Q Consensus 480 ~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 558 (686)
.. .+++|+.|++++| .+..+|..+..+++|+.|++++| .+..+|.. ..+++|+.|++++|+-..+.++. .+..
T Consensus 187 ~~-~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~---~~~~ 260 (487)
T 3oja_A 187 QV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---FFSK 260 (487)
T ss_dssp CC-CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHH---HHTT
T ss_pred cc-cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHH---HHHh
Confidence 32 2445666666553 44445555556666666666663 33344432 33456666666666633233443 4555
Q ss_pred CCCccEEEec
Q 048062 559 FSSLRQLTII 568 (686)
Q Consensus 559 l~~L~~L~i~ 568 (686)
++.|+.+.+.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 6666666554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.5e-16 Score=171.31 Aligned_cols=227 Identities=16% Similarity=0.119 Sum_probs=170.2
Q ss_pred CchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecC
Q 048062 399 ELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFP 478 (686)
Q Consensus 399 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~ 478 (686)
.+|..+..+ ...+++|++|++++|......|..+..+++|++|++++|......| +..+++|++|++++|.+..+|
T Consensus 21 ~l~~~l~~l--~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 21 SLKQALASL--RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp THHHHHHTT--STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE
T ss_pred hhHHHHHHh--cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC
Confidence 345554443 1222589999999976555557788999999999999987655544 888999999999999888877
Q ss_pred CCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhccccc
Q 048062 479 QGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGF 556 (686)
Q Consensus 479 ~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l 556 (686)
.. ++|+.|++++| .+..++. ..+++|+.|++++|. +..++.. +.+++|++|++++|. +.+..+. ...
T Consensus 97 ~~----~~L~~L~L~~N-~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~l~ 165 (487)
T 3oja_A 97 VG----PSIETLHAANN-NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFA--ELA 165 (487)
T ss_dssp EC----TTCCEEECCSS-CCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSC-CCEEEGG--GGG
T ss_pred CC----CCcCEEECcCC-cCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCC-CCCcChH--HHh
Confidence 43 58999999985 5555544 357899999999864 4444332 346899999999997 6544444 233
Q ss_pred CCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCC
Q 048062 557 HRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEK 636 (686)
Q Consensus 557 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~ 636 (686)
..+++|+.|++++| .+..++... .+++|++|++++ +.+..+|..+..+++|+.|++++| .+..+|..
T Consensus 166 ~~l~~L~~L~Ls~N-~l~~~~~~~----------~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 166 ASSDTLEHLNLQYN-FIYDVKGQV----------VFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp GGTTTCCEEECTTS-CCCEEECCC----------CCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTT
T ss_pred hhCCcccEEecCCC-ccccccccc----------cCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchh
Confidence 47899999999995 677776543 567999999999 678888888888999999999995 57777764
Q ss_pred -CCcCccceeeecCChhH
Q 048062 637 -GLPSSLLLLIIWECPLI 653 (686)
Q Consensus 637 -~~~~~L~~L~i~~c~~l 653 (686)
+.+++|+.|++++|+..
T Consensus 233 l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 233 LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCTTCCEEECTTCCBC
T ss_pred hccCCCCCEEEcCCCCCc
Confidence 34678999999887644
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.7e-16 Score=154.45 Aligned_cols=200 Identities=21% Similarity=0.199 Sum_probs=115.1
Q ss_pred CCCCCceEEecCCCCccchH-HhhcCCCCCCeeeecccCCccccc-ccccCCCCCcEEEecC-ceeeecCC-CCCCCCCc
Q 048062 412 LPPSLKSLRVGGCSKLESIA-ERLDNNTSLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWE-CDLVSFPQ-GGLPCAKL 487 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~l~~l~~-~~~~~~~L 487 (686)
+|+++++|++++|. ++.++ ..+..+++|++|++++|..++.++ ..+..+++|++|++++ |.++.++. .+..+++|
T Consensus 29 ~~~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 34577777877753 44443 356667777777777765444443 3456666677777666 56666554 23345566
Q ss_pred cEEeeccccccccccccccCCCCCC---eEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCcc-
Q 048062 488 MRLEISYCKRLQVLPKGLHNLTSLQ---QLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLR- 563 (686)
Q Consensus 488 ~~L~l~~~~~l~~l~~~l~~l~~L~---~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~- 563 (686)
+.|++++| .++.+|. +..+++|+ +|++++|+.++.++. ..+..+++|+
T Consensus 108 ~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~ 159 (239)
T 2xwt_C 108 KFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETL 159 (239)
T ss_dssp CEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEE
T ss_pred CEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhccee
Confidence 66666663 3444554 44444444 555555433333332 2355566666
Q ss_pred EEEeccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccccccc-ccCCC-CCcCEEeecCCCCCCcCCCCCCcCc
Q 048062 564 QLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDL-QYLTSLYLLECPKLKYFPEKGLPSS 641 (686)
Q Consensus 564 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l-~~L~~L~i~~c~~l~~l~~~~~~~~ 641 (686)
.|++++ +.++.++.... ..++|++|++++++.++.++. .+..+ ++|+.|++++ +.++.+|.. .+++
T Consensus 160 ~L~l~~-n~l~~i~~~~~---------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~ 227 (239)
T 2xwt_C 160 TLKLYN-NGFTSVQGYAF---------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEH 227 (239)
T ss_dssp EEECCS-CCCCEECTTTT---------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTT
T ss_pred EEEcCC-CCCcccCHhhc---------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-Hhcc
Confidence 666666 35556655331 225677777777545666653 34556 7777777777 456667654 4567
Q ss_pred cceeeecCChh
Q 048062 642 LLLLIIWECPL 652 (686)
Q Consensus 642 L~~L~i~~c~~ 652 (686)
|+.|++.+++.
T Consensus 228 L~~L~l~~~~~ 238 (239)
T 2xwt_C 228 LKELIARNTWT 238 (239)
T ss_dssp CSEEECTTC--
T ss_pred CceeeccCccC
Confidence 77777777654
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1.4e-16 Score=154.87 Aligned_cols=194 Identities=19% Similarity=0.184 Sum_probs=124.6
Q ss_pred CCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCCC--CCCCCceee
Q 048062 463 QLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEEDG--LPTNLHSLE 538 (686)
Q Consensus 463 ~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~ 538 (686)
+|++|++++|.++.++. ....+++|+.|++++|..++.++. .+..+++|++|++++|+.++.++... .+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555555554 333445566666655433444443 45556666666666544555554332 345666666
Q ss_pred ccCCcchhhhhhhcccccCCCCCcc---EEEeccCCCceEcCCCcCCCCCCCCCCCccccc-eeeccccccccccccccC
Q 048062 539 INSNKEIWKSMIERGRGFHRFSSLR---QLTIINCDDVVSFPLKADDKGSGTTLPLPASLT-TLWIFNFPNLERLSSSIV 614 (686)
Q Consensus 539 l~~~~~l~~~~~~~~~~l~~l~~L~---~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~l~~~~~ 614 (686)
+++|. ++ .+|. +..+++|+ .|++++++.++.++.... ..+++|+ +|++++ +.++.+|....
T Consensus 112 l~~n~-l~-~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--------~~l~~L~~~L~l~~-n~l~~i~~~~~ 176 (239)
T 2xwt_C 112 IFNTG-LK-MFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAF--------QGLCNETLTLKLYN-NGFTSVQGYAF 176 (239)
T ss_dssp EEEEC-CC-SCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTT--------TTTBSSEEEEECCS-CCCCEECTTTT
T ss_pred CCCCC-Cc-cccc----cccccccccccEEECCCCcchhhcCcccc--------cchhcceeEEEcCC-CCCcccCHhhc
Confidence 66665 43 2322 45566666 999999768888886421 3578999 999999 67889987655
Q ss_pred CCCCcCEEeecCCCCCCcCCCCCC--c-CccceeeecCChhHHHHhhcCCCCCccccCCcceEEecce
Q 048062 615 DLQYLTSLYLLECPKLKYFPEKGL--P-SSLLLLIIWECPLIVEKCRKDGGQYWDLLTHIPRVEIDGK 679 (686)
Q Consensus 615 ~l~~L~~L~i~~c~~l~~l~~~~~--~-~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~i~~~~~~~~ 679 (686)
..++|++|++++|+.++.++...+ + ++|+.|++++++-- .+ ... .+++++.+++.+.
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l----~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-AL----PSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CC----CCT---TCTTCSEEECTTC
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cC----Chh---HhccCceeeccCc
Confidence 558999999999877999886544 5 89999999987421 11 111 4667777777654
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=8.1e-16 Score=153.91 Aligned_cols=200 Identities=24% Similarity=0.282 Sum_probs=136.4
Q ss_pred CCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCce-eeec-CCCCCCCCCccEE
Q 048062 413 PPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECD-LVSF-PQGGLPCAKLMRL 490 (686)
Q Consensus 413 ~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~l-~~~~~~~~~L~~L 490 (686)
|+++++|+++++......+..+..+++|++|++++|......+..+..+++|++|++++|. +..+ +.....+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4688888888864444334567888888888888876655556777888888888888885 7776 4455667788888
Q ss_pred eeccccccccccccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEec
Q 048062 491 EISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTII 568 (686)
Q Consensus 491 ~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~ 568 (686)
++++|......+..+..+++|++|++++| .++.++.. +.+++|++|++++|. ++ .++. ..+..+++|+.|+++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~--~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-IS-SVPE--RAFRGLHSLDRLLLH 185 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CC-EECT--TTTTTCTTCCEEECC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCc-cc-ccCH--HHhcCccccCEEECC
Confidence 88885443334556778888888888885 45555543 346778888888776 54 2332 246677788888888
Q ss_pred cCCCceEc-CCCcCCCCCCCCCCCccccceeecccccccccccc-ccCCCCCcCEEeecCCC
Q 048062 569 NCDDVVSF-PLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDLQYLTSLYLLECP 628 (686)
Q Consensus 569 ~c~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l~~L~~L~i~~c~ 628 (686)
++ .+..+ +..+ ..+++|++|++++ +.++.++. .+..+++|+.|++++++
T Consensus 186 ~n-~l~~~~~~~~---------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 186 QN-RVAHVHPHAF---------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SS-CCCEECTTTT---------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CC-cccccCHhHc---------cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 74 44444 4433 2456777777777 46666653 35677777777777764
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=5.5e-17 Score=164.56 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=72.6
Q ss_pred CCCceEEecCCCCcc---chH-HhhcCCCCCCeeeecccCCccccc-ccccCCCCCcEEEecCceeeecCCCCCCCCCcc
Q 048062 414 PSLKSLRVGGCSKLE---SIA-ERLDNNTSLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLM 488 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~---~l~-~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~ 488 (686)
++|++|++++|. ++ .++ ..+..+++|++|++++|......| ..+..+++|++|++++|.++.+|.... ++|+
T Consensus 201 ~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp TTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred CCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 567777777753 33 222 234577888888888877665543 345567888899998888888887655 5888
Q ss_pred EEeeccccccccccccccCCCCCCeEEecCCC
Q 048062 489 RLEISYCKRLQVLPKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 489 ~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 520 (686)
.|++++ +.++.+|. +..+++|++|++++++
T Consensus 278 ~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 278 VLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred EEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 888888 46666666 7788888888888754
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=9.5e-16 Score=153.40 Aligned_cols=216 Identities=19% Similarity=0.226 Sum_probs=170.7
Q ss_pred ceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeec-CCCCCCCCCccEEeeccc
Q 048062 417 KSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSF-PQGGLPCAKLMRLEISYC 495 (686)
Q Consensus 417 ~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~ 495 (686)
+.++.++ ..++.+|.. -.++|++|++++|......+..+..+++|++|++++|.+..+ |.....+++|++|++++|
T Consensus 14 ~~~~c~~-~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCS-SCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCc-CCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5666666 466777743 357999999999877666567789999999999999988877 556677889999999997
Q ss_pred cccccc-cccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCC
Q 048062 496 KRLQVL-PKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDD 572 (686)
Q Consensus 496 ~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~ 572 (686)
..++.+ |..+..+++|++|++++|. +..++.. ..+++|++|++++|. ++ .++. ..+..+++|++|+++++ .
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~-~~~~--~~~~~l~~L~~L~l~~n-~ 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQ-ALPD--DTFRDLGNLTHLFLHGN-R 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CC-CCCT--TTTTTCTTCCEEECCSS-C
T ss_pred CCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-cc-ccCH--hHhccCCCccEEECCCC-c
Confidence 767776 6688999999999999965 5555432 457899999999998 55 3333 35788999999999995 7
Q ss_pred ceEcCCCcCCCCCCCCCCCccccceeecccccccccc-ccccCCCCCcCEEeecCCCCCCcCCCC--CCcCccceeeecC
Q 048062 573 VVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERL-SSSIVDLQYLTSLYLLECPKLKYFPEK--GLPSSLLLLIIWE 649 (686)
Q Consensus 573 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~ 649 (686)
++.++... ...+++|++|+++++ .+..+ |..+..+++|+.|++++| .+..++.. ..+++|+.|++++
T Consensus 165 l~~~~~~~--------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 165 ISSVPERA--------FRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCEECTTT--------TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCS
T ss_pred ccccCHHH--------hcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccC
Confidence 88877642 135789999999995 56655 777889999999999996 67777643 3467999999999
Q ss_pred Ch
Q 048062 650 CP 651 (686)
Q Consensus 650 c~ 651 (686)
+|
T Consensus 235 N~ 236 (285)
T 1ozn_A 235 NP 236 (285)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.4e-16 Score=161.55 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=115.7
Q ss_pred CCCCCCeeeecccCCcccccccc--cCCCCCcEEEecCceeeecCCCCCCC-----CCccEEeeccccccccccccccCC
Q 048062 436 NNTSLETIAVSFCRNLKILPSGL--HNLRQLQEIGIWECDLVSFPQGGLPC-----AKLMRLEISYCKRLQVLPKGLHNL 508 (686)
Q Consensus 436 ~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~l~~l~~~l~~l 508 (686)
.+++|++|++++|.....+|..+ ..+++|++|++++|.+..+|.....+ ++|++|++++|......|..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 56666666666666555555544 56667777777776666554432222 567777776643322223566667
Q ss_pred CCCCeEEecCCCCCCCC---CCC--CCCCCCceeeccCCcchhh--hhhhcccccCCCCCccEEEeccCCCceEcC-CCc
Q 048062 509 TSLQQLRIGKGVELPSL---EED--GLPTNLHSLEINSNKEIWK--SMIERGRGFHRFSSLRQLTIINCDDVVSFP-LKA 580 (686)
Q Consensus 509 ~~L~~L~l~~c~~l~~~---~~~--~~~~~L~~L~l~~~~~l~~--~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~-~~~ 580 (686)
++|++|++++|.....+ +.. +.+++|++|++++|. ++. .++. ..+..+++|+.|+++++ .+...+ ...
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 248 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCS--ALAAARVQLQGLDLSHN-SLRDAAGAPS 248 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHH--HHHHTTCCCSEEECTTS-CCCSSCCCSC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHH--HHHhcCCCCCEEECCCC-cCCcccchhh
Confidence 77777777765432221 111 345667777777765 431 1222 23456677777777774 444432 111
Q ss_pred CCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCCCCcCccceeeecCCh
Q 048062 581 DDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKGLPSSLLLLIIWECP 651 (686)
Q Consensus 581 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 651 (686)
...+++|++|++++ +.++.+|..+. ++|++|+++++ +++.+|....+++|++|++++++
T Consensus 249 --------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 249 --------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp --------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred --------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 02356777777777 46667776444 67777777774 56666654446677777777664
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=3.3e-15 Score=154.03 Aligned_cols=220 Identities=21% Similarity=0.188 Sum_probs=167.0
Q ss_pred CCCCCceEEecCCCCccchHH-hhcCCCCCCeeeecccCCcccccc-cccCCCCCcEEEe-cCceeeecCC-CCCCCCCc
Q 048062 412 LPPSLKSLRVGGCSKLESIAE-RLDNNTSLETIAVSFCRNLKILPS-GLHNLRQLQEIGI-WECDLVSFPQ-GGLPCAKL 487 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l-~~~~l~~l~~-~~~~~~~L 487 (686)
+|+++++|++++| .++.+|. .+.++++|++|++++|...+.++. .+.++++++++.+ .+|++..++. .+..+++|
T Consensus 28 l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 28 LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred cCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 3478999999995 5667764 578899999999999888776664 5677888776544 4568888865 44567899
Q ss_pred cEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCCC---CCCCCceeeccCCcchhhhhhhcccccCCCCCcc
Q 048062 488 MRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEEDG---LPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLR 563 (686)
Q Consensus 488 ~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~ 563 (686)
+.|+++++ .+..+|. .+....++..|++.++..+..++... ....++.|++++|. ++ .++. ......+|+
T Consensus 107 ~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~-~i~~---~~f~~~~L~ 180 (350)
T 4ay9_X 107 QYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQ-EIHN---SAFNGTQLD 180 (350)
T ss_dssp CEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CC-EECT---TSSTTEEEE
T ss_pred cccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-cc-CCCh---hhccccchh
Confidence 99999884 5665554 44556677888888888888877643 34578889999987 65 4444 344567899
Q ss_pred EEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCCCCcCccc
Q 048062 564 QLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKGLPSSLL 643 (686)
Q Consensus 564 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~ 643 (686)
+|.+.+++.++.+|.... ..+++|++|++++ +.++++|. ..+.+|++|.+.+|.+++.+|....+++|+
T Consensus 181 ~l~l~~~n~l~~i~~~~f--------~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~ 249 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVF--------HGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALM 249 (350)
T ss_dssp EEECTTCTTCCCCCTTTT--------TTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCC
T ss_pred HHhhccCCcccCCCHHHh--------ccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChh
Confidence 999998888999886431 3678999999999 68999987 668899999999999999999766678898
Q ss_pred eeeecC
Q 048062 644 LLIIWE 649 (686)
Q Consensus 644 ~L~i~~ 649 (686)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 888854
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.2e-15 Score=150.66 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=125.5
Q ss_pred CCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccc
Q 048062 377 SSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPS 456 (686)
Q Consensus 377 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~ 456 (686)
.++++.+++++ +.++. +| ..+|++++.|++++|......+..+..+++|++|++++|.... ++.
T Consensus 9 l~~l~~l~~~~-~~l~~-ip-------------~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 72 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTA-LP-------------PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV 72 (290)
T ss_dssp STTCCEEECTT-SCCSS-CC-------------SCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC
T ss_pred cCCccEEECCC-CCCCc-CC-------------CCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC
Confidence 44677777777 45555 33 1233677888888865444446667778888888887765433 333
Q ss_pred cccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccccccccc-ccccCCCCCCeEEecCCCCCCCCCCC--CCCCC
Q 048062 457 GLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLP-KGLHNLTSLQQLRIGKGVELPSLEED--GLPTN 533 (686)
Q Consensus 457 ~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 533 (686)
...+++|++|++++|.+..+|.....+++|+.|+++++ .++.+| ..+..+++|++|++++| .++.++.. ..+++
T Consensus 73 -~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 73 -DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPK 149 (290)
T ss_dssp -CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTT
T ss_pred -CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccC
Confidence 25677788888888777777776666777888888774 455554 45777777777777774 45555543 23567
Q ss_pred CceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccc
Q 048062 534 LHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFP 604 (686)
Q Consensus 534 L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 604 (686)
|++|++++|. ++ .++. ..+..+++|+.|++++ +.+..+|.... ...+|+.|++.+++
T Consensus 150 L~~L~L~~N~-l~-~l~~--~~~~~l~~L~~L~L~~-N~l~~ip~~~~---------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNN-LT-ELPA--GLLNGLENLDTLLLQE-NSLYTIPKGFF---------GSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSC-CS-CCCT--TTTTTCTTCCEEECCS-SCCCCCCTTTT---------TTCCCSEEECCSCC
T ss_pred CCEEECCCCc-CC-ccCH--HHhcCcCCCCEEECCC-CcCCccChhhc---------ccccCCeEEeCCCC
Confidence 7777777776 54 3433 3456677777777776 45666666542 34467777776643
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=3.9e-15 Score=148.16 Aligned_cols=200 Identities=20% Similarity=0.179 Sum_probs=140.3
Q ss_pred CCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEE
Q 048062 412 LPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRL 490 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L 490 (686)
+|+++++|++++|......+..+.++++|++|++++|......+..+..+++|++|++++|.+..++. ....+++|+.|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 44679999999864333334478888999999999886655555578888999999999998887764 45667889999
Q ss_pred eeccccccccccc-cccCCCCCCeEEecCCCCCCC--CCC-CCCCCCCceeeccCCcchhhhhhhcccccCCCCCcc---
Q 048062 491 EISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPS--LEE-DGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLR--- 563 (686)
Q Consensus 491 ~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~--- 563 (686)
++.+| .+..++. .+..+++|++|++++|. ++. ++. ...+++|++|++++|. ++...+. .+..+++|+
T Consensus 106 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~l~ 179 (276)
T 2z62_A 106 VAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT---DLRVLHQMPLLN 179 (276)
T ss_dssp ECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGG---GGHHHHTCTTCC
T ss_pred ECCCC-CccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHH---Hhhhhhhccccc
Confidence 99885 4444443 67888899999998854 443 232 2346788888888887 4422222 344455555
Q ss_pred -EEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccc-cCCCCCcCEEeecCCC
Q 048062 564 -QLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS-IVDLQYLTSLYLLECP 628 (686)
Q Consensus 564 -~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~-~~~l~~L~~L~i~~c~ 628 (686)
.|++++ +.+..++.... ...+|++|++++ +.++.+|.. +..+++|++|++++++
T Consensus 180 l~L~ls~-n~l~~~~~~~~---------~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 180 LSLDLSL-NPMNFIQPGAF---------KEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCS-SCCCEECTTSS---------CSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeeecCC-CcccccCcccc---------CCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 788888 46777665442 334788888888 457777764 4678888888888764
No 78
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.5e-14 Score=149.05 Aligned_cols=240 Identities=20% Similarity=0.221 Sum_probs=154.3
Q ss_pred cEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc-cccCCCCccEEeccCCCCCccCCC--CCCC
Q 048062 219 KSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ-SSLSLSSLREIEIYKCSSLVSFPE--VALP 295 (686)
Q Consensus 219 ~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~-~~~~l~~L~~L~l~~~~~l~~lp~--~~~l 295 (686)
++++.++. .++++|.. .++++++|++++|. ++.+|. .+..+++|++|+|++|...+.+|. +..+
T Consensus 12 ~~v~C~~~-~Lt~iP~~-----------l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSD-----------LPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEEST-TCCSCCTT-----------CCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCC-CCCccCcC-----------cCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 45555554 47787765 23678888888875 477775 467888888888888865555654 4557
Q ss_pred CCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeeccccCcccccccccccccccccc
Q 048062 296 SKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRY 375 (686)
Q Consensus 296 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 375 (686)
+++..+.+.+++.+..++.... ..+++|++|+++++. +..++......
T Consensus 79 ~~l~~~l~~~~N~l~~l~~~~f-~~l~~L~~L~l~~n~-l~~~~~~~~~~------------------------------ 126 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNTG-IKHLPDVHKIH------------------------------ 126 (350)
T ss_dssp TTCCEEEEEEETTCCEECTTSB-CCCTTCCEEEEEEEC-CSSCCCCTTCC------------------------------
T ss_pred hhhhhhhcccCCcccccCchhh-hhccccccccccccc-cccCCchhhcc------------------------------
Confidence 7777666655566666654332 257777777777654 44443322211
Q ss_pred cCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccc
Q 048062 376 ASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILP 455 (686)
Q Consensus 376 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 455 (686)
..++..+++.+++.+.. ++...+ ..++..++.|++++| .++.++.......+|+.+.+.++..++.+|
T Consensus 127 -~~~l~~l~l~~~~~i~~-l~~~~f---------~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 127 -SLQKVLLDIQDNINIHT-IERNSF---------VGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp -BSSCEEEEEESCTTCCE-ECTTSS---------TTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred -cchhhhhhhcccccccc-ccccch---------hhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCC
Confidence 11244444444444443 221111 111145777888774 556666655566778888888777777776
Q ss_pred c-cccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecC
Q 048062 456 S-GLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGK 518 (686)
Q Consensus 456 ~-~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~ 518 (686)
. .+..+++|+.|++++|.++.+|.... .+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~~--~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPSYGL--ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCSSSC--TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred HHHhccCcccchhhcCCCCcCccChhhh--ccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 4 46778888888888888888887543 4788888888888888874 67777777777754
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=2.4e-14 Score=143.08 Aligned_cols=195 Identities=17% Similarity=0.174 Sum_probs=126.1
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
++++++++.+ ..++.+|..+. ++++.|++++|......+..+..+++|+.|++++|.+..++.. ..+++|+.|+++
T Consensus 10 ~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred CCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4677777776 35556664432 5677777777766555556677777777777777777666654 455677777777
Q ss_pred cccccccccccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCC
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCD 571 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~ 571 (686)
+ +.++.+|..+..+++|++|++++| .++.++.. ..+++|++|++++|. ++ .++. ..+..+++|+.|++++ +
T Consensus 86 ~-N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~-~~~~--~~~~~l~~L~~L~L~~-N 158 (290)
T 1p9a_G 86 H-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LK-TLPP--GLLTPTPKLEKLSLAN-N 158 (290)
T ss_dssp S-SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CC-CCCT--TTTTTCTTCCEEECTT-S
T ss_pred C-CcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CC-ccCh--hhcccccCCCEEECCC-C
Confidence 7 456667766777777777777774 45555433 345677777777776 54 2333 3456677777777777 3
Q ss_pred CceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCC
Q 048062 572 DVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECP 628 (686)
Q Consensus 572 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 628 (686)
.++.++.... ..+++|++|++++ +.++.+|..+..+++|+.|++.++|
T Consensus 159 ~l~~l~~~~~--------~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 159 NLTELPAGLL--------NGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCSCCCTTTT--------TTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cCCccCHHHh--------cCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 5666665331 2456777777777 5677777766667777777777654
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=2.1e-14 Score=145.03 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=62.9
Q ss_pred hcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCC
Q 048062 213 QDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEV 292 (686)
Q Consensus 213 ~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~ 292 (686)
..+++|++|++++|. ++.++. +..+ ++|++|++++|. +..++. +..+++|++|++++|. ++.++.+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~~------~~~l----~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~ 103 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIEG------VQYL----NNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVSAI 103 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCTT------GGGC----TTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCGGG
T ss_pred HHcCCcCEEEeeCCC-ccCchh------hhcc----CCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCchhh
Confidence 456777777777764 666542 4445 777777777764 355555 6677777777777764 5666666
Q ss_pred CCCCCCcEEeccccccccccchhhhcccCCCccEEeEecC
Q 048062 293 ALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDC 332 (686)
Q Consensus 293 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~ 332 (686)
..+++|++|++++| .+..++. +. .+++|++|++++|
T Consensus 104 ~~l~~L~~L~l~~n-~l~~~~~-l~--~l~~L~~L~l~~n 139 (308)
T 1h6u_A 104 AGLQSIKTLDLTST-QITDVTP-LA--GLSNLQVLYLDLN 139 (308)
T ss_dssp TTCTTCCEEECTTS-CCCCCGG-GT--TCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCC-CCCCchh-hc--CCCCCCEEECCCC
Confidence 66666777777664 3444443 22 4556666666554
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=2.5e-14 Score=141.68 Aligned_cols=155 Identities=28% Similarity=0.369 Sum_probs=65.9
Q ss_pred ccCCCCCcEEEecCceeeecCCCC-CCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCC
Q 048062 458 LHNLRQLQEIGIWECDLVSFPQGG-LPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTN 533 (686)
Q Consensus 458 l~~l~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 533 (686)
+..+++|++|++++|.+..++... ..+++|++|+++++ .+..+|. .+..+++|++|++++| .++.++.. ..+++
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 134 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTK 134 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcC
Confidence 344444444444444444443322 22344444444442 2222222 2344444444444442 22222221 22344
Q ss_pred CceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccc-
Q 048062 534 LHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSS- 612 (686)
Q Consensus 534 L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~- 612 (686)
|++|++++|. ++ .++. ..+..+++|+.|++++| .+..++... ...+++|++|++++ +.++.++..
T Consensus 135 L~~L~Ls~n~-l~-~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~ 200 (270)
T 2o6q_A 135 LTYLSLGYNE-LQ-SLPK--GVFDKLTSLKELRLYNN-QLKRVPEGA--------FDKLTELKTLKLDN-NQLKRVPEGA 200 (270)
T ss_dssp CCEEECCSSC-CC-CCCT--TTTTTCTTCCEEECCSS-CCSCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTT
T ss_pred CCEEECCCCc-CC-ccCH--hHccCCcccceeEecCC-cCcEeChhH--------hccCCCcCEEECCC-CcCCcCCHHH
Confidence 4444444443 32 1222 13445555555555553 344443321 01334555555555 345555432
Q ss_pred cCCCCCcCEEeecCCC
Q 048062 613 IVDLQYLTSLYLLECP 628 (686)
Q Consensus 613 ~~~l~~L~~L~i~~c~ 628 (686)
+..+++|+.|++++++
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccccCCCEEEecCCC
Confidence 3455666666666544
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=2.9e-16 Score=161.31 Aligned_cols=256 Identities=15% Similarity=0.159 Sum_probs=169.1
Q ss_pred CccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccc-cccc
Q 048062 379 LLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKI-LPSG 457 (686)
Q Consensus 379 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~-~~~~ 457 (686)
.++.++++++ .+. +..+..+ ..++++.|++.++. +...+..+..+++|++|++++|..... ++..
T Consensus 48 ~~~~l~l~~~-~~~--------~~~~~~~----~~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 48 LWQTLDLTGK-NLH--------PDVTGRL----LSQGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp TSSEEECTTC-BCC--------HHHHHHH----HHTTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred hheeeccccc-cCC--------HHHHHhh----hhccceEEEcCCcc-ccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 4778888773 222 2222222 11578899988864 443433466789999999999875443 6667
Q ss_pred ccCCCCCcEEEecCceee-ecCCCCCCCCCccEEeeccccccc--cccccccCCCCCCeEEecCCCCCCCC--CC-CCCC
Q 048062 458 LHNLRQLQEIGIWECDLV-SFPQGGLPCAKLMRLEISYCKRLQ--VLPKGLHNLTSLQQLRIGKGVELPSL--EE-DGLP 531 (686)
Q Consensus 458 l~~l~~L~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~c~~l~~~--~~-~~~~ 531 (686)
+..+++|++|++++|.+. ..+.....+++|++|++++|..+. .++..+..+++|++|++++|+.++.. +. ...+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 788899999999999766 344444457799999999986666 36667788899999999998666542 22 1335
Q ss_pred C-CCceeeccCCc-chh-hhhhhcccccCCCCCccEEEeccCCCceE-cCCCcCCCCCCCCCCCccccceeecccccccc
Q 048062 532 T-NLHSLEINSNK-EIW-KSMIERGRGFHRFSSLRQLTIINCDDVVS-FPLKADDKGSGTTLPLPASLTTLWIFNFPNLE 607 (686)
Q Consensus 532 ~-~L~~L~l~~~~-~l~-~~~~~~~~~l~~l~~L~~L~i~~c~~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 607 (686)
+ +|++|++++|. .++ ..++. .+..+++|++|++++|..++. .+... ...++|++|++++|..+.
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~l---------~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLST---LVRRCPNLVHLDLSDSVMLKNDCFQEF---------FQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHH---HHHHCTTCSEEECTTCTTCCGGGGGGG---------GGCTTCCEEECTTCTTCC
T ss_pred ccCCCEEEeCCCcccCCHHHHHH---HHhhCCCCCEEeCCCCCcCCHHHHHHH---------hCCCCCCEeeCCCCCCCC
Confidence 6 89999999985 344 34444 566788999999999865542 33333 245789999999987443
Q ss_pred ccc-cccCCCCCcCEEeecCCCCCCcCCCCCC---cCccceeeecCChhHHHHhhcCCCCCcc
Q 048062 608 RLS-SSIVDLQYLTSLYLLECPKLKYFPEKGL---PSSLLLLIIWECPLIVEKCRKDGGQYWD 666 (686)
Q Consensus 608 ~l~-~~~~~l~~L~~L~i~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~~~~~~~~~~~ 666 (686)
.-. ..+..+++|++|++++| ++..++ ..+++.|+++ |+.+........+..|.
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~~~~~~~~~ 318 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIARPTIGNKKN 318 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTTCSSCSSTTC
T ss_pred HHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccccCCccccccc
Confidence 221 24567899999999988 444332 3457778875 44444444433343333
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=4.5e-14 Score=139.85 Aligned_cols=195 Identities=22% Similarity=0.275 Sum_probs=142.7
Q ss_pred ccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccccccc
Q 048062 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLH 459 (686)
Q Consensus 380 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 459 (686)
.+.+++++ +.++. +| ..+|+++++|++++|......+..+..+++|++|++++|......+..+.
T Consensus 18 ~~~l~~~~-~~l~~-ip-------------~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 18 KNSVDCSS-KKLTA-IP-------------SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTEEECTT-SCCSS-CC-------------SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCEEEccC-CCCCc-cC-------------CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence 56777776 55665 44 12446899999999654333344688899999999998765544344567
Q ss_pred CCCCCcEEEecCceeeecCCC-CCCCCCccEEeecccccccccc-ccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCc
Q 048062 460 NLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYCKRLQVLP-KGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLH 535 (686)
Q Consensus 460 ~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 535 (686)
.+++|++|++++|.+..++.. ...+++|+.|+++++ .++.++ ..+..+++|++|++++| .++.++.. ..+++|+
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccc
Confidence 889999999999988888764 356789999999985 455444 46788999999999996 56666653 4578999
Q ss_pred eeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccc
Q 048062 536 SLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFP 604 (686)
Q Consensus 536 ~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 604 (686)
+|++++|. ++ .++. ..+..+++|++|++++| .+..++.... ..+++|+.|++++++
T Consensus 161 ~L~L~~n~-l~-~~~~--~~~~~l~~L~~L~L~~N-~l~~~~~~~~--------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 161 ELRLYNNQ-LK-RVPE--GAFDKLTELKTLKLDNN-QLKRVPEGAF--------DSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSC-CS-CCCT--TTTTTCTTCCEEECCSS-CCSCCCTTTT--------TTCTTCCEEECCSSC
T ss_pred eeEecCCc-Cc-EeCh--hHhccCCCcCEEECCCC-cCCcCCHHHh--------ccccCCCEEEecCCC
Confidence 99999987 55 3333 35788899999999985 6777765421 356789999998854
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=1.3e-14 Score=146.67 Aligned_cols=187 Identities=12% Similarity=0.129 Sum_probs=101.6
Q ss_pred hcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhh
Q 048062 118 HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 196 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (686)
.+++|++|++++|.... +.+..+++|++|++++|.....+. +..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L--------------------------- 90 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITEL--------------------------- 90 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEE---------------------------
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEE---------------------------
Confidence 47888888888875444 667778888888888876555443 4444555555
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCcc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLR 276 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 276 (686)
++++|.+...+ .+..+++|++|++++|. ++.++. +..+ ++|++|++++|.. ..++. ++.+++|+
T Consensus 91 -~L~~n~l~~~~--~~~~l~~L~~L~l~~n~-l~~~~~------l~~l----~~L~~L~l~~n~l-~~~~~-l~~l~~L~ 154 (308)
T 1h6u_A 91 -ELSGNPLKNVS--AIAGLQSIKTLDLTSTQ-ITDVTP------LAGL----SNLQVLYLDLNQI-TNISP-LAGLTNLQ 154 (308)
T ss_dssp -ECCSCCCSCCG--GGTTCTTCCEEECTTSC-CCCCGG------GTTC----TTCCEEECCSSCC-CCCGG-GGGCTTCC
T ss_pred -EccCCcCCCch--hhcCCCCCCEEECCCCC-CCCchh------hcCC----CCCCEEECCCCcc-CcCcc-ccCCCCcc
Confidence 33333333332 24455566666665553 444432 3334 5566666665542 44443 55555666
Q ss_pred EEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeecc
Q 048062 277 EIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIYL 354 (686)
Q Consensus 277 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 354 (686)
+|++++|. ++.++.+..+++|+.|+++++ .+..++. +. .+++|++|++++|. +..++....+++|+.|++++
T Consensus 155 ~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-l~--~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 155 YLSIGNAQ-VSDLTPLANLSKLTTLKADDN-KISDISP-LA--SLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp EEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-GG--GCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred EEEccCCc-CCCChhhcCCCCCCEEECCCC-ccCcChh-hc--CCCCCCEEEccCCc-cCccccccCCCCCCEEEccC
Confidence 66666553 445555555556666666553 3344433 21 35556666665543 44444334455555555554
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=3.3e-14 Score=141.43 Aligned_cols=205 Identities=20% Similarity=0.214 Sum_probs=157.4
Q ss_pred CccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccc-cc
Q 048062 426 KLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVL-PK 503 (686)
Q Consensus 426 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l-~~ 503 (686)
.+..+|..+. ++|++|++++|......+..+..+++|++|++++|.+..++. ....+++|++|++++|. +..+ +.
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChh
Confidence 3445564432 579999999987666555678899999999999999988876 55667899999999964 5444 46
Q ss_pred cccCCCCCCeEEecCCCCCCCCCC--CCCCCCCceeeccCCcchhh-hhhhcccccCCCCCccEEEeccCCCceEcCCCc
Q 048062 504 GLHNLTSLQQLRIGKGVELPSLEE--DGLPTNLHSLEINSNKEIWK-SMIERGRGFHRFSSLRQLTIINCDDVVSFPLKA 580 (686)
Q Consensus 504 ~l~~l~~L~~L~l~~c~~l~~~~~--~~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~ 580 (686)
.+..+++|++|++++|. +..++. .+.+++|++|++++|. ++. .++. .+..+++|++|++++| .++.++...
T Consensus 95 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~ 168 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPE---YFSNLTNLEHLDLSSN-KIQSIYCTD 168 (276)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCG---GGGGCTTCCEEECCSS-CCCEECGGG
T ss_pred hhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCch---hhccCCCCCEEECCCC-CCCcCCHHH
Confidence 78999999999999964 555544 3457899999999998 542 2344 6888999999999995 666665322
Q ss_pred CCCCCCCCCCCccccc----eeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCCC--CcCccceeeecC
Q 048062 581 DDKGSGTTLPLPASLT----TLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKG--LPSSLLLLIIWE 649 (686)
Q Consensus 581 ~~~~~~~~~~~~~~L~----~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~--~~~~L~~L~i~~ 649 (686)
...+++|+ +|++++ +.++.++.......+|++|++++| .++.+|... .+++|+.|++++
T Consensus 169 --------~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 169 --------LRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp --------GHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred --------hhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 02345566 788998 688888877767779999999996 588888753 378999999994
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=144.80 Aligned_cols=224 Identities=13% Similarity=0.062 Sum_probs=134.2
Q ss_pred CCceEEecCCCCccc-hHH--hhcCCCCCCeeeecccCCcccccccc--cCCCCCcEEEecCceeeec-C----CCCCCC
Q 048062 415 SLKSLRVGGCSKLES-IAE--RLDNNTSLETIAVSFCRNLKILPSGL--HNLRQLQEIGIWECDLVSF-P----QGGLPC 484 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~-l~~--~l~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~l-~----~~~~~~ 484 (686)
.++.+.+.++..... +.. ....+++|++|++++|......|..+ ..+++|++|++++|.+... + .....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666433211 111 12234557777777776666666655 6677777777777765532 1 111245
Q ss_pred CCccEEeeccccccccccccccCCCCCCeEEecCCCCCCC--CCC---CCCCCCCceeeccCCcchhhhhhhcc-cccCC
Q 048062 485 AKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPS--LEE---DGLPTNLHSLEINSNKEIWKSMIERG-RGFHR 558 (686)
Q Consensus 485 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~--~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~-~~l~~ 558 (686)
++|++|++++|......+..+..+++|++|++++|..... ++. .+.+++|++|++++|. ++ .++... +.+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-ME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CC-chHHHHHHHHhc
Confidence 6777777777544333445667777777777777653321 111 1345678888888876 43 121100 12456
Q ss_pred CCCccEEEeccCCCceEc-CCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCCCCCcCCCCC
Q 048062 559 FSSLRQLTIINCDDVVSF-PLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECPKLKYFPEKG 637 (686)
Q Consensus 559 l~~L~~L~i~~c~~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 637 (686)
+++|++|+++++ .+..+ |...+ ....+++|++|++++ +.++.+|..+ +++|++|++++| +++.+|...
T Consensus 223 l~~L~~L~Ls~N-~l~~~~p~~~~------~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~~~ 291 (310)
T 4glp_A 223 GVQPHSLDLSHN-SLRATVNPSAP------RCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSSN-RLNRAPQPD 291 (310)
T ss_dssp TCCCSSEECTTS-CCCCCCCSCCS------SCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCSC-CCCSCCCTT
T ss_pred CCCCCEEECCCC-CCCccchhhHH------hccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCCC-cCCCCchhh
Confidence 788888888884 55554 44332 111236888888888 5777887654 378888888885 577766545
Q ss_pred CcCccceeeecCCh
Q 048062 638 LPSSLLLLIIWECP 651 (686)
Q Consensus 638 ~~~~L~~L~i~~c~ 651 (686)
.+++|+.|++++++
T Consensus 292 ~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 292 ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCSCEECSSTT
T ss_pred hCCCccEEECcCCC
Confidence 56788888888775
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=3.1e-14 Score=141.11 Aligned_cols=197 Identities=23% Similarity=0.303 Sum_probs=131.6
Q ss_pred hcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhh
Q 048062 118 HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 196 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (686)
.+++|++|.+.+|.... +.++.+++|++|++++|....+ + .+.++++|+.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~-~----------------------------~l~~l~~L~~ 89 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-S----------------------------ALKELTNLTY 89 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC-G----------------------------GGTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc-h----------------------------hhcCCCCCCE
Confidence 47888888888876544 6677888888888888764432 1 2334445555
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc-cccCCCCc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ-SSLSLSSL 275 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~-~~~~l~~L 275 (686)
+++++|.+..+++..+..+++|++|++++|. ++.++... +..+ ++|++|++++|.. ..+|. .++.+++|
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~n~l-~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGV----FDKL----TNLTYLNLAHNQL-QSLPKGVFDKLTNL 159 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT----TTTC----TTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHH----hccC----CCCCEEECCCCcc-CccCHHHhccCccC
Confidence 5666677777777777788888888888875 66666532 4555 7888888888754 55554 35678888
Q ss_pred cEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccEEeec
Q 048062 276 REIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKRLEIY 353 (686)
Q Consensus 276 ~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 353 (686)
++|++++|. ++.++. ++.+++|+.|++++|. +..++.... ..+++|++|++++++.. ..+++|+.+.+.
T Consensus 160 ~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~ 230 (272)
T 3rfs_A 160 TELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVF-DRLTSLQYIWLHDNPWD------CTCPGIRYLSEW 230 (272)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSSCBC------CCTTTTHHHHHH
T ss_pred CEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHHHH-hCCcCCCEEEccCCCcc------ccCcHHHHHHHH
Confidence 888888875 666665 5667888888888854 545544322 25788888888877522 234566666665
Q ss_pred cccCccccc
Q 048062 354 LCYNLRTLT 362 (686)
Q Consensus 354 ~c~~l~~l~ 362 (686)
.+.....+|
T Consensus 231 ~n~~~g~ip 239 (272)
T 3rfs_A 231 INKHSGVVR 239 (272)
T ss_dssp HHHTGGGBB
T ss_pred HHhCCCccc
Confidence 543333343
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=9.9e-14 Score=137.49 Aligned_cols=179 Identities=23% Similarity=0.254 Sum_probs=114.3
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEee
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEI 492 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l 492 (686)
++|++|++++|. +..++ .+..+++|++|++++|......+..+..+++|++|++++|.+..++.. ...+++|+.|++
T Consensus 63 ~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 677888887764 33343 567777888888887765544445567777888888888877766654 345667888888
Q ss_pred ccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEecc
Q 048062 493 SYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIIN 569 (686)
Q Consensus 493 ~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~ 569 (686)
++| .+..++. .+..+++|++|++++| .++.++.. +.+++|++|++++|. +++..+ ..+..+++|+.|++++
T Consensus 141 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 141 AHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPD---GVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT---TTTTTCTTCCEEECCS
T ss_pred CCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-CCccCH---HHHhCCcCCCEEEccC
Confidence 775 4555544 4567778888888775 35555542 345677777777776 553332 2566777777777777
Q ss_pred CCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCC
Q 048062 570 CDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDL 616 (686)
Q Consensus 570 c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l 616 (686)
++-. . .+++|+.|+++.+..-..+|.++..+
T Consensus 215 N~~~----~------------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 215 NPWD----C------------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp SCBC----C------------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCcc----c------------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 5321 1 23467777777654445666544433
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1.6e-14 Score=148.26 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCceEEecCCC-Cc--cchHHhhcCCCCCCeeeecccCCc-ccccccccCCCCCcEEEecCc
Q 048062 415 SLKSLRVGGCS-KL--ESIAERLDNNTSLETIAVSFCRNL-KILPSGLHNLRQLQEIGIWEC 472 (686)
Q Consensus 415 ~L~~L~l~~~~-~~--~~l~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~ 472 (686)
+|++|++++|. .+ ..++..+..+++|++|++++|..+ ...+..+..+++|++|++++|
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 66666666653 22 334555556666666666666532 233444555555565555555
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=146.43 Aligned_cols=196 Identities=17% Similarity=0.139 Sum_probs=118.3
Q ss_pred CCCceEEecCCCCccchHHhh--cCCCCCCeeeecccCCccccc----ccccCCCCCcEEEecCceeeecCC-CCCCCCC
Q 048062 414 PSLKSLRVGGCSKLESIAERL--DNNTSLETIAVSFCRNLKILP----SGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAK 486 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~ 486 (686)
++|++|++++|...+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|.+..++. ....+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 346666666655444555544 566666666666665544322 223346667777777776665543 4445566
Q ss_pred ccEEeecccccccc--cc--ccccCCCCCCeEEecCCCCCCCCCCC-----CCCCCCceeeccCCcchhhhhhhcccccC
Q 048062 487 LMRLEISYCKRLQV--LP--KGLHNLTSLQQLRIGKGVELPSLEED-----GLPTNLHSLEINSNKEIWKSMIERGRGFH 557 (686)
Q Consensus 487 L~~L~l~~~~~l~~--l~--~~l~~l~~L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~~~~l~ 557 (686)
|++|++++|..... ++ ..+..+++|++|++++| .++.++.. ..+++|++|++++|. +.+..|. .+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~---~~~ 245 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNP---SAP 245 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCS---CCS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchh---hHH
Confidence 77777776543221 22 12356667777777774 34443321 234677777777776 5433333 233
Q ss_pred CC---CCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCC
Q 048062 558 RF---SSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECP 628 (686)
Q Consensus 558 ~l---~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 628 (686)
.+ ++|++|++++ +.++.+|... +++|++|++++ +.++.+|. +..+++|+.|++++++
T Consensus 246 ~~~~~~~L~~L~Ls~-N~l~~lp~~~-----------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSF-AGLEQVPKGL-----------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCS-SCCCSCCSCC-----------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCC-CCCCchhhhh-----------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 33 6888888887 4666776533 36888888888 67777764 5778889999988854
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=9.2e-13 Score=128.81 Aligned_cols=170 Identities=22% Similarity=0.340 Sum_probs=125.9
Q ss_pred ccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccccccc
Q 048062 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLH 459 (686)
Q Consensus 380 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 459 (686)
.+.+++++ ..++. +| ..+|++++.|++++|......+..+..+++|++|++++|......+..+.
T Consensus 16 ~~~l~~~~-~~l~~-~p-------------~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 16 KKEVDCQG-KSLDS-VP-------------SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp GTEEECTT-CCCSS-CC-------------SCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CeEEecCC-CCccc-cC-------------CCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 56677776 45555 44 22347899999999765555566788899999999999877666666688
Q ss_pred CCCCCcEEEecCceeeecCCC-CCCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCCCc
Q 048062 460 NLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTNLH 535 (686)
Q Consensus 460 ~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 535 (686)
.+++|++|++++|.+..++.. +..+++|+.|+++++ .++.++. .+..+++|++|++++| .++.++.. +.+++|+
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCC
Confidence 889999999999988887763 456789999999885 6666665 4678899999999885 56666653 3467888
Q ss_pred eeeccCCcchhhhhhhcccccCCCCCccEEEeccC
Q 048062 536 SLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 536 ~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
+|++++|. ++ .++. ..+..+++|+.|+++++
T Consensus 159 ~L~L~~N~-l~-~~~~--~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 159 TLSLSTNQ-LQ-SVPH--GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSC-CS-CCCT--TTTTTCTTCCEEECCSC
T ss_pred EEECCCCc-CC-ccCH--HHHhCCCCCCEEEeeCC
Confidence 88888887 55 3332 35777888888888884
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=6.5e-14 Score=145.12 Aligned_cols=256 Identities=14% Similarity=0.061 Sum_probs=131.8
Q ss_pred hhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCC-CccEEEccCCCCCccccccccCC----
Q 048062 198 TKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSC-RLEYLALSGCEGLVKLPQSSLSL---- 272 (686)
Q Consensus 198 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~-~L~~L~l~~~~~l~~~p~~~~~l---- 272 (686)
.++.|.+.+..+..+...++|++|++++|. ++..+.......+..+ + +|++|++++|......+..+..+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 344555665555555666668888888886 7776653222234444 5 78888888886433334444432
Q ss_pred -CCccEEeccCCCCCccCCC------CCCC-CCCcEEeccccccccccchhhhc---cc-CCCccEEeEecCCCCccccc
Q 048062 273 -SSLREIEIYKCSSLVSFPE------VALP-SKLKKIQIRECDALKSLPQAWMC---DN-NSSLEILKIWDCHSLTYIAG 340 (686)
Q Consensus 273 -~~L~~L~l~~~~~l~~lp~------~~~l-~~L~~L~l~~~~~l~~l~~~~~~---~~-l~~L~~L~l~~~~~l~~~~~ 340 (686)
++|++|++++|. ++..+. +... ++|++|++++|. ++..+..... .. .++|++|++++|. ++....
T Consensus 79 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~ 155 (362)
T 3goz_A 79 PANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSS 155 (362)
T ss_dssp CTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCH
T ss_pred CCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHH
Confidence 788888888875 544332 2223 677777777754 4443332111 11 2466666666653 332111
Q ss_pred ccCCCcccEEeeccccCcccccccccccccccccccC-CCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceE
Q 048062 341 VQLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYAS-SLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSL 419 (686)
Q Consensus 341 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L 419 (686)
. .++ ..+. .. ++|++|++++| .++. .. +..+... ....|++|++|
T Consensus 156 ~------------------~l~--~~l~-------~~~~~L~~L~Ls~n-~l~~-~~----~~~l~~~-l~~~~~~L~~L 201 (362)
T 3goz_A 156 D------------------ELI--QILA-------AIPANVNSLNLRGN-NLAS-KN----CAELAKF-LASIPASVTSL 201 (362)
T ss_dssp H------------------HHH--HHHH-------TSCTTCCEEECTTS-CGGG-SC----HHHHHHH-HHTSCTTCCEE
T ss_pred H------------------HHH--HHHh-------cCCccccEeeecCC-CCch-hh----HHHHHHH-HHhCCCCCCEE
Confidence 0 000 0000 01 13555555552 3332 11 1111111 22232366666
Q ss_pred EecCCCCccc-----hHHhhcC-CCCCCeeeecccCCcccc----cccccCCCCCcEEEecCcee--------eecCCCC
Q 048062 420 RVGGCSKLES-----IAERLDN-NTSLETIAVSFCRNLKIL----PSGLHNLRQLQEIGIWECDL--------VSFPQGG 481 (686)
Q Consensus 420 ~l~~~~~~~~-----l~~~l~~-l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l--------~~l~~~~ 481 (686)
++++|. ++. ++..+.. .++|++|++++|...... ...+..+++|+.|++++|.+ ..++...
T Consensus 202 ~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 202 DLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp ECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred ECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 666653 332 4555544 346777777766543321 12335566777777777752 2333344
Q ss_pred CCCCCccEEeecccc
Q 048062 482 LPCAKLMRLEISYCK 496 (686)
Q Consensus 482 ~~~~~L~~L~l~~~~ 496 (686)
..+++|+.|+++++.
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 455667777777753
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=1.3e-14 Score=152.07 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=86.3
Q ss_pred CCCceEEecCCCCccc----hHHhhcCC---------CCCCeeeecccCCc-cccc---ccccCCCCCcEEEecCceee-
Q 048062 414 PSLKSLRVGGCSKLES----IAERLDNN---------TSLETIAVSFCRNL-KILP---SGLHNLRQLQEIGIWECDLV- 475 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~----l~~~l~~l---------~~L~~L~l~~~~~~-~~~~---~~l~~l~~L~~L~l~~~~l~- 475 (686)
++|++|++++|..... ++..+..+ ++|++|++++|... ..++ ..+..+++|++|++++|.+.
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 201 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence 5677777777644222 22233333 67777777776654 2232 34455667777777777655
Q ss_pred -----ecCCCCCCCCCccEEeecccccc----ccccccccCCCCCCeEEecCCCCCCCC-----CCC---CCCCCCceee
Q 048062 476 -----SFPQGGLPCAKLMRLEISYCKRL----QVLPKGLHNLTSLQQLRIGKGVELPSL-----EED---GLPTNLHSLE 538 (686)
Q Consensus 476 -----~l~~~~~~~~~L~~L~l~~~~~l----~~l~~~l~~l~~L~~L~l~~c~~l~~~-----~~~---~~~~~L~~L~ 538 (686)
.++.....+++|+.|++++|..- ..+|..+..+++|++|++++|. ++.. +.. +.+++|++|+
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~ 280 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLR 280 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEE
Confidence 23324455567777777775431 4556667777777777777764 3322 111 2245666666
Q ss_pred ccCCcchhh----hhhhcccccCCCCCccEEEeccC
Q 048062 539 INSNKEIWK----SMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 539 l~~~~~l~~----~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
+++|. +.. .++. ....++++|+.|++++|
T Consensus 281 L~~n~-i~~~g~~~l~~--~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 281 LQYNE-IELDAVRTLKT--VIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CCSSC-CBHHHHHHHHH--HHHHHCTTCCEEECTTS
T ss_pred CcCCc-CCHHHHHHHHH--HHHhcCCCceEEEccCC
Confidence 66665 443 2443 12244566666666664
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=4e-14 Score=148.20 Aligned_cols=242 Identities=12% Similarity=0.087 Sum_probs=129.3
Q ss_pred hhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCC--C-ccccccc-------cCCCCccEEecc
Q 048062 212 LQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEG--L-VKLPQSS-------LSLSSLREIEIY 281 (686)
Q Consensus 212 ~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~--l-~~~p~~~-------~~l~~L~~L~l~ 281 (686)
+..+++|++|++++|. ++..... .++.....+++|++|++++|.. + ..+|..+ ..+++|++|+++
T Consensus 28 l~~~~~L~~L~L~~n~-i~~~~~~----~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT-IGTEAAR----WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHCSCCCEEECTTSE-ECHHHHH----HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HhcCCCccEEECCCCC-CCHHHHH----HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4667788888888774 5543221 1222112237788888887632 1 1334433 567778888887
Q ss_pred CCCCCcc-----CCC-CCCCCCCcEEeccccccccccc-hhhh--cccC---------CCccEEeEecCCCCc--ccccc
Q 048062 282 KCSSLVS-----FPE-VALPSKLKKIQIRECDALKSLP-QAWM--CDNN---------SSLEILKIWDCHSLT--YIAGV 341 (686)
Q Consensus 282 ~~~~l~~-----lp~-~~~l~~L~~L~l~~~~~l~~l~-~~~~--~~~l---------~~L~~L~l~~~~~l~--~~~~~ 341 (686)
+|. ++. +|. +..+++|++|++++|. +...+ ..+. ...+ ++|++|++++|. ++ .++.
T Consensus 103 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~- 178 (386)
T 2ca6_A 103 DNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKE- 178 (386)
T ss_dssp SCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHH-
T ss_pred CCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHH-
Confidence 775 333 332 4456677777777653 22111 1111 0012 556666665544 22 1110
Q ss_pred cCCCcccEEeeccccCcccccccccccccccccccCCCccEEeccCCccccccccCCCc-hhhhhhhhccCCCCCCceEE
Q 048062 342 QLPPSLKRLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTCIFSKNEL-PATLESLEVGNLPPSLKSLR 420 (686)
Q Consensus 342 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~~~~~~l~~~~~~~~L~~L~ 420 (686)
+. ..+. .+++|++|++++| .++. .....+ +.. ...+ ++|++|+
T Consensus 179 -------------------l~--~~l~-------~~~~L~~L~L~~n-~l~~-~g~~~l~~~~-----l~~~-~~L~~L~ 222 (386)
T 2ca6_A 179 -------------------WA--KTFQ-------SHRLLHTVKMVQN-GIRP-EGIEHLLLEG-----LAYC-QELKVLD 222 (386)
T ss_dssp -------------------HH--HHHH-------HCTTCCEEECCSS-CCCH-HHHHHHHHTT-----GGGC-TTCCEEE
T ss_pred -------------------HH--HHHH-------hCCCcCEEECcCC-CCCH-hHHHHHHHHH-----hhcC-CCccEEE
Confidence 00 0000 1223555555553 3331 000000 001 1222 5777888
Q ss_pred ecCCCCc----cchHHhhcCCCCCCeeeecccCCccc----ccccc--cCCCCCcEEEecCceeee-----cCCCC-CCC
Q 048062 421 VGGCSKL----ESIAERLDNNTSLETIAVSFCRNLKI----LPSGL--HNLRQLQEIGIWECDLVS-----FPQGG-LPC 484 (686)
Q Consensus 421 l~~~~~~----~~l~~~l~~l~~L~~L~l~~~~~~~~----~~~~l--~~l~~L~~L~l~~~~l~~-----l~~~~-~~~ 484 (686)
+++|... ..+|..+..+++|++|++++|..... ++..+ +.+++|+.|++++|.+.. +|... ..+
T Consensus 223 Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred CcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 8776542 55677777888888888888765443 34445 337888888888887665 66544 345
Q ss_pred CCccEEeecccccc
Q 048062 485 AKLMRLEISYCKRL 498 (686)
Q Consensus 485 ~~L~~L~l~~~~~l 498 (686)
++|+.|++++|...
T Consensus 303 ~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 303 PDLLFLELNGNRFS 316 (386)
T ss_dssp TTCCEEECTTSBSC
T ss_pred CCceEEEccCCcCC
Confidence 68888888886443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=4.7e-13 Score=133.81 Aligned_cols=166 Identities=17% Similarity=0.244 Sum_probs=88.0
Q ss_pred hcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhh
Q 048062 118 HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 196 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (686)
.+++|++|++++|.... +.+..+++|++|++++|....++. +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L--------------------------- 95 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWL--------------------------- 95 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE---------------------------
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEE---------------------------
Confidence 46777888877775444 556667777777777765443222 2223333333
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCcc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLR 276 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 276 (686)
++++|.+...+. +..+++|++|++++|. ++.++. +..+ ++|++|++++|.. ..+ ..+..+++|+
T Consensus 96 -~l~~n~l~~~~~--l~~l~~L~~L~L~~n~-i~~~~~------l~~l----~~L~~L~l~~n~l-~~~-~~l~~l~~L~ 159 (291)
T 1h6t_A 96 -FLDENKVKDLSS--LKDLKKLKSLSLEHNG-ISDING------LVHL----PQLESLYLGNNKI-TDI-TVLSRLTKLD 159 (291)
T ss_dssp -ECCSSCCCCGGG--GTTCTTCCEEECTTSC-CCCCGG------GGGC----TTCCEEECCSSCC-CCC-GGGGGCTTCS
T ss_pred -ECCCCcCCCChh--hccCCCCCEEECCCCc-CCCChh------hcCC----CCCCEEEccCCcC-Ccc-hhhccCCCCC
Confidence 333344443322 4556666666666653 554422 3444 5666666666542 444 3455566666
Q ss_pred EEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecC
Q 048062 277 EIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDC 332 (686)
Q Consensus 277 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~ 332 (686)
+|++++|. ++.++.+..+++|+.|++++| .++.++. +. .+++|+.|+++++
T Consensus 160 ~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N-~i~~l~~-l~--~l~~L~~L~l~~n 210 (291)
T 1h6t_A 160 TLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HISDLRA-LA--GLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCBCGG-GT--TCTTCSEEEEEEE
T ss_pred EEEccCCc-cccchhhcCCCccCEEECCCC-cCCCChh-hc--cCCCCCEEECcCC
Confidence 66666653 444444555556666666553 3444432 21 3555555555554
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2e-12 Score=126.41 Aligned_cols=133 Identities=21% Similarity=0.318 Sum_probs=70.9
Q ss_pred ccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc
Q 048062 188 LPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ 267 (686)
Q Consensus 188 l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~ 267 (686)
|.++++|+.+++++|.+...++..+..+++|++|++++|. ++.++... +..+ ++|++|++++|.. ..+|.
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l----~~L~~L~L~~N~l-~~~~~ 124 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGV----FDHL----TQLDKLYLGGNQL-KSLPS 124 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT----TTTC----TTCCEEECCSSCC-CCCCT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhH----hccc----CCCCEEEcCCCcC-CCcCh
Confidence 3344444444555555555555555666666666666654 55555421 3444 6666666666543 44444
Q ss_pred c-ccCCCCccEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 268 S-SLSLSSLREIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 268 ~-~~~l~~L~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
. +..+++|++|++++|. ++.+|. ++.+++|+.|+++++ .+..++.... ..+++|++|++++++
T Consensus 125 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAF-DRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSCC
T ss_pred hHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHH-hCCCCCCEEEeeCCc
Confidence 3 3556666666666653 555553 445666666666663 3444443211 145566666665544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=1.2e-12 Score=130.83 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=126.8
Q ss_pred cchHhHhhhhccCCCCCcccCCCCcccccchhcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCC
Q 048062 87 QTEAFRRKLVLGNREPAAAHDQPSSSRTRTKHLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGS 165 (686)
Q Consensus 87 ~~~~~l~~l~i~~~~~~~~~~~~~~~~~~p~~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (686)
....+++.+.+.+..... . .. -..+++|++|++++|.... +++..+++|++|++++|.....+ .+
T Consensus 43 ~~l~~L~~L~l~~~~i~~------~-~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l----- 108 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS------V-QG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SL----- 108 (291)
T ss_dssp HHHHTCCEEECTTSCCCC------C-TT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GG-----
T ss_pred hhcCcccEEEccCCCccc------C-hh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh-hh-----
Confidence 345667778887763221 1 11 2357999999999987655 56999999999999998754422 23
Q ss_pred cceeecccCcchhhccCCCCCCccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhh
Q 048062 166 QNSVVCRDTSNQVFLAGPLKPQLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLC 245 (686)
Q Consensus 166 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~ 245 (686)
..+++|+.+++++|.+..++ .+..+++|+.|++++|. ++.++. +..+
T Consensus 109 -----------------------~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~-l~~~~~------l~~l- 155 (291)
T 1h6t_A 109 -----------------------KDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNK-ITDITV------LSRL- 155 (291)
T ss_dssp -----------------------TTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSC-CCCCGG------GGGC-
T ss_pred -----------------------ccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCc-CCcchh------hccC-
Confidence 34444555566667666653 36789999999999985 777632 6667
Q ss_pred hcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccc
Q 048062 246 ELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECD 307 (686)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~ 307 (686)
++|++|++++|.. ..++. +..+++|++|++++|. ++.++.+..+++|+.|+++++.
T Consensus 156 ---~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 156 ---TKLDTLSLEDNQI-SDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ---TTCSEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred ---CCCCEEEccCCcc-ccchh-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence 9999999999964 66665 8899999999999985 8888888999999999999964
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=2e-13 Score=141.48 Aligned_cols=106 Identities=11% Similarity=0.009 Sum_probs=55.6
Q ss_pred CCCceEEecCCCCccchHH----hhcCC-CCCCeeeecccCCccc----ccccccC-CCCCcEEEecCceeeecCC----
Q 048062 414 PSLKSLRVGGCSKLESIAE----RLDNN-TSLETIAVSFCRNLKI----LPSGLHN-LRQLQEIGIWECDLVSFPQ---- 479 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~----~l~~l-~~L~~L~l~~~~~~~~----~~~~l~~-l~~L~~L~l~~~~l~~l~~---- 479 (686)
++|++|++++|......+. .+..+ ++|++|++++|..... ++..+.. .++|++|++++|.+...+.
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 4777788777644333332 33444 4777777777654331 3333433 3467777777775553322
Q ss_pred -CCCCCCCccEEeeccccc-------cccccccccCCCCCCeEEecCC
Q 048062 480 -GGLPCAKLMRLEISYCKR-------LQVLPKGLHNLTSLQQLRIGKG 519 (686)
Q Consensus 480 -~~~~~~~L~~L~l~~~~~-------l~~l~~~l~~l~~L~~L~l~~c 519 (686)
....+++|+.|++++|.. +..++..+..+++|+.|+++++
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 233445666666666430 1222334444555555555553
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=3e-12 Score=138.98 Aligned_cols=182 Identities=19% Similarity=0.279 Sum_probs=92.4
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecc
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISY 494 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 494 (686)
+++.|++++| .++.+|..+ +++|++|++++|... .+| ..+++|+.|++++|.++.+|. ... +|+.|++++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 4555555554 233344333 245555555554332 344 234556666666665555555 222 566666655
Q ss_pred ccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCce
Q 048062 495 CKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVV 574 (686)
Q Consensus 495 ~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~ 574 (686)
| .+..+|. .+++|+.|++++| .++.+|. .+++|++|++++|. ++. +|. +. ++|+.|++++| .++
T Consensus 130 N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~-lp~----l~--~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 130 N-QLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTF-LPE----LP--ESLEALDVSTN-LLE 193 (571)
T ss_dssp S-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSC-CCC----CC--TTCCEEECCSS-CCS
T ss_pred C-cCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCC-cch----hh--CCCCEEECcCC-CCC
Confidence 3 4444554 4556666666653 3444444 44566666666665 432 322 22 56666666663 555
Q ss_pred EcCCCcCCCCCCCCCCCccccceeeccccccccccccccCCCCCcCEEeecCCC
Q 048062 575 SFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSIVDLQYLTSLYLLECP 628 (686)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~l~~L~~L~i~~c~ 628 (686)
.+|. +.. .-...++.|++|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 194 ~lp~-~~~----~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 194 SLPA-VPV----RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCC-CC------------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred chhh-HHH----hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 5554 210 0000011126666666 4666666666666667777666654
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=2.1e-12 Score=121.10 Aligned_cols=147 Identities=14% Similarity=0.192 Sum_probs=106.8
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeee-cCCCCCCCCCccEEee
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVS-FPQGGLPCAKLMRLEI 492 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l 492 (686)
++|++|++++| .+..+| .+..+++|++|++++| .+..+ ..+..+++|++|++++|.+.. .+.....+++|+.|++
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 57888888885 455666 5778888888888887 44444 357778888888888887774 5556667788888888
Q ss_pred ccccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccC
Q 048062 493 SYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 493 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
++|......+..+..+++|++|++++|..++.++....+++|++|++++|. +.+ ++ .+..+++|++|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~-~~----~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHD-YR----GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCC-CT----TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcC-hH----HhccCCCCCEEEeeCc
Confidence 886544456677888888888888887667777655566778888888876 442 21 3566777777777773
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.37 E-value=1.4e-12 Score=122.21 Aligned_cols=148 Identities=12% Similarity=0.109 Sum_probs=76.5
Q ss_pred hhcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhh
Q 048062 117 KHLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELI 195 (686)
Q Consensus 117 ~~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (686)
..+++|++|++++|.... +.+..+++|++|++++|.... .+.+ ..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~-~~~l----------------------------~~l~~L~ 91 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN-YNPI----------------------------SGLSNLE 91 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC-CGGG----------------------------TTCTTCC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc-chhh----------------------------hcCCCCC
Confidence 457888888888775544 667777888888888763221 1122 2223333
Q ss_pred hchhhhhhhhcccchhhhcCcCccEeeccccccccc-ccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCC
Q 048062 196 LSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSS 274 (686)
Q Consensus 196 ~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~ 274 (686)
.+++++|.+.......+..+++|++|++++|. ++. .+. .+..+ ++|++|++++|..+..+| .+..+++
T Consensus 92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~-----~l~~l----~~L~~L~L~~n~~i~~~~-~l~~l~~ 160 (197)
T 4ezg_A 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSILT-----KINTL----PKVNSIDLSYNGAITDIM-PLKTLPE 160 (197)
T ss_dssp EEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGGHH-----HHTTC----SSCCEEECCSCTBCCCCG-GGGGCSS
T ss_pred EEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHhHH-----HHhhC----CCCCEEEccCCCCccccH-hhcCCCC
Confidence 33444444444333334555555555555553 332 111 13444 555555555554334444 3455555
Q ss_pred ccEEeccCCCCCccCCCCCCCCCCcEEeccc
Q 048062 275 LREIEIYKCSSLVSFPEVALPSKLKKIQIRE 305 (686)
Q Consensus 275 L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~ 305 (686)
|++|++++|. +..++.+..+++|+.|++++
T Consensus 161 L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 161 LKSLNIQFDG-VHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCEEECTTBC-CCCCTTGGGCSSCCEEEECB
T ss_pred CCEEECCCCC-CcChHHhccCCCCCEEEeeC
Confidence 5555555553 44444444455555555544
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=3.4e-12 Score=138.52 Aligned_cols=91 Identities=26% Similarity=0.403 Sum_probs=58.8
Q ss_pred CCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEe
Q 048062 249 CRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILK 328 (686)
Q Consensus 249 ~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 328 (686)
.+|+.|++++|. +..+|..+. ++|++|++++|. ++.+| ..+++|++|++++| .++.+|. +. .+|++|+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N-~l~~ip~-l~----~~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNLP--PQITVLEITQNA-LISLP--ELPASLEYLDACDN-RLSTLPE-LP----ASLKHLD 126 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCCC--TTCSEEECCSSC-CSCCC--CCCTTCCEEECCSS-CCSCCCC-CC----TTCCEEE
T ss_pred CCccEEEeCCCC-CCccCHhHc--CCCCEEECcCCC-Ccccc--cccCCCCEEEccCC-CCCCcch-hh----cCCCEEE
Confidence 478888888875 466777653 778888888874 66777 55777888888774 4555665 32 2677777
Q ss_pred EecCCCCcccccccCCCcccEEeecc
Q 048062 329 IWDCHSLTYIAGVQLPPSLKRLEIYL 354 (686)
Q Consensus 329 l~~~~~l~~~~~~~~~~~L~~L~l~~ 354 (686)
+++|. ++.++. .+++|+.|++++
T Consensus 127 Ls~N~-l~~lp~--~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 127 VDNNQ-LTMLPE--LPALLEYINADN 149 (571)
T ss_dssp CCSSC-CSCCCC--CCTTCCEEECCS
T ss_pred CCCCc-CCCCCC--cCccccEEeCCC
Confidence 76654 444443 344455555444
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=6.3e-12 Score=138.00 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=96.3
Q ss_pred chhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccc
Q 048062 190 KLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSS 269 (686)
Q Consensus 190 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~ 269 (686)
.+..+..+.+..+.+..... +..+++|+.|++++|. +..++. +..+ ++|+.|+|++|.. ..+|. +
T Consensus 19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~-i~~l~~------l~~l----~~L~~L~Ls~N~l-~~~~~-l 83 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSVQG------IQYL----PNVTKLFLNGNKL-TDIKP-L 83 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCC-CCCCTT------GGGC----TTCCEEECTTSCC-CCCGG-G
T ss_pred HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCC-CCCChH------HccC----CCCCEEEeeCCCC-CCChh-h
Confidence 34445555666565555544 3578888888888875 777653 5556 8888888888864 66665 7
Q ss_pred cCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCcccE
Q 048062 270 LSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLKR 349 (686)
Q Consensus 270 ~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 349 (686)
..+++|+.|+|++|. +..+|.+..+++|+.|++++| .+..++. +. .+++|+.|++++|. +..++....+++|+.
T Consensus 84 ~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~-l~--~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 157 (605)
T 1m9s_A 84 TNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHN-GISDING-LV--HLPQLESLYLGNNK-ITDITVLSRLTKLDT 157 (605)
T ss_dssp GGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTS-CCCCCGG-GG--GCTTCSEEECCSSC-CCCCGGGGSCTTCSE
T ss_pred ccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCC-CCCCCcc-cc--CCCccCEEECCCCc-cCCchhhcccCCCCE
Confidence 788888888888885 777777788888888888885 3555543 22 47777777777764 444433344455555
Q ss_pred Eeecc
Q 048062 350 LEIYL 354 (686)
Q Consensus 350 L~l~~ 354 (686)
|++++
T Consensus 158 L~Ls~ 162 (605)
T 1m9s_A 158 LSLED 162 (605)
T ss_dssp EECCS
T ss_pred EECcC
Confidence 55544
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=5.6e-12 Score=138.41 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=97.4
Q ss_pred hcccceeeeccCCcccc-cccCCCCcceEEEEcCccceeEccccccCCCcceeecccCcchhhccCCCCCCccchhhhhh
Q 048062 118 HLLALEKLVIEGCEELS-VSISSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPQLPKLEELIL 196 (686)
Q Consensus 118 ~l~~L~~L~l~~c~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (686)
.+++|+.|++++|.... +.+..+++|+.|++++|....++. +..+++|+.|.+.++.-.. .+.+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~------l~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD------LSSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC------CTTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC------ChhhccCCCCCE
Confidence 47888888888876554 677788888888888887665554 5566667766444432211 114455555555
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCcc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLR 276 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 276 (686)
|++++|.+..++ .+..+++|+.|+|++|. +..++. +..+ ++|+.|+|++|.. ..++. +..+++|+
T Consensus 114 L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~-l~~l~~------l~~l----~~L~~L~Ls~N~l-~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 114 LSLEHNGISDIN--GLVHLPQLESLYLGNNK-ITDITV------LSRL----TKLDTLSLEDNQI-SDIVP-LAGLTKLQ 178 (605)
T ss_dssp EECTTSCCCCCG--GGGGCTTCSEEECCSSC-CCCCGG------GGSC----TTCSEEECCSSCC-CCCGG-GTTCTTCC
T ss_pred EEecCCCCCCCc--cccCCCccCEEECCCCc-cCCchh------hccc----CCCCEEECcCCcC-CCchh-hccCCCCC
Confidence 566666555542 24556666666666553 444421 3444 5666666666543 33333 55566666
Q ss_pred EEeccCCCCCccCCCCCCCCCCcEEecccc
Q 048062 277 EIEIYKCSSLVSFPEVALPSKLKKIQIREC 306 (686)
Q Consensus 277 ~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~ 306 (686)
.|+|++|. +..+|.+..+++|+.|++++|
T Consensus 179 ~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 179 NLYLSKNH-ISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp EEECCSSC-CCBCGGGTTCTTCSEEECCSE
T ss_pred EEECcCCC-CCCChHHccCCCCCEEEccCC
Confidence 66666653 455555555666666666554
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=3.1e-11 Score=114.17 Aligned_cols=138 Identities=22% Similarity=0.243 Sum_probs=66.4
Q ss_pred ccCCCCCcEEEecCceeeecCCCC-CCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCC
Q 048062 458 LHNLRQLQEIGIWECDLVSFPQGG-LPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTN 533 (686)
Q Consensus 458 l~~l~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 533 (686)
+..+++|++|++++|.+..++... ..+++|++|++++| .++.++. .+..+++|++|++++| .++.++.. ..+++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCc
Confidence 334444444444444444444322 23344455554442 2333332 2344555555555553 23333332 23445
Q ss_pred CceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccccccccc
Q 048062 534 LHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSSSI 613 (686)
Q Consensus 534 L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 613 (686)
|++|++++|. ++ .++. ..+..+++|+.|++++++-. ..+++|++|+++.+..-..+|.++
T Consensus 126 L~~L~l~~N~-l~-~~~~--~~~~~l~~L~~L~l~~N~~~----------------~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 126 LKDLRLYQNQ-LK-SVPD--GVFDRLTSLQYIWLHDNPWD----------------CTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp CCEEECCSSC-CS-CCCT--TTTTTCTTCCEEECCSCCBC----------------CCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred CCEEECCCCc-cc-eeCH--HHhccCCCccEEEecCCCee----------------cCCCCHHHHHHHHHhCCceeeccC
Confidence 5555555554 33 2222 24566677777777775211 133467777777755555666555
Q ss_pred CCCC
Q 048062 614 VDLQ 617 (686)
Q Consensus 614 ~~l~ 617 (686)
..++
T Consensus 186 ~~l~ 189 (208)
T 2o6s_A 186 GSVA 189 (208)
T ss_dssp SSBC
T ss_pred cccc
Confidence 4444
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=2.9e-11 Score=118.75 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=134.1
Q ss_pred cchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccc
Q 048062 189 PKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQS 268 (686)
Q Consensus 189 ~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~ 268 (686)
.++.++..++++.+.+..++ .+..+++|++|++++|. ++.++. +..+ ++|++|++++|. +..+|.
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~-i~~l~~------l~~l----~~L~~L~L~~N~-i~~~~~- 80 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSN-IQSLAG------MQFF----TNLKELHLSHNQ-ISDLSP- 80 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSC-CCCCTT------GGGC----TTCCEEECCSSC-CCCCGG-
T ss_pred HHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCC-cccchH------HhhC----CCCCEEECCCCc-cCCChh-
Confidence 36777888888888888877 36789999999999985 888763 5666 999999999986 477776
Q ss_pred ccCCCCccEEeccCCCCCccCCCCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccccCCCccc
Q 048062 269 SLSLSSLREIEIYKCSSLVSFPEVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGVQLPPSLK 348 (686)
Q Consensus 269 ~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 348 (686)
+..+++|++|++++|. ++.+|.+.. ++|+.|++++| .++.++. +. .+++|++|+++++. ++.++....+++|+
T Consensus 81 l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L~L~~N-~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~ 153 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRLFLDNN-ELRDTDS-LI--HLKNLEILSIRNNK-LKSIVMLGFLSKLE 153 (263)
T ss_dssp GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEEECCSS-CCSBSGG-GT--TCTTCCEEECTTSC-CCBCGGGGGCTTCC
T ss_pred hccCCCCCEEECCCCc-cCCcCcccc-CcccEEEccCC-ccCCChh-hc--CcccccEEECCCCc-CCCChHHccCCCCC
Confidence 8899999999999985 788887666 99999999996 5666653 33 68999999999875 77777667889999
Q ss_pred EEeeccccCcccccccccccccccccccCCCccEEeccCCccccc
Q 048062 349 RLEIYLCYNLRTLTVEEGIQCSSSRRYASSLLEELEISGCLSLTC 393 (686)
Q Consensus 349 ~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 393 (686)
.|+++++. +..+..... +++|+.|++++ +.+..
T Consensus 154 ~L~L~~N~-i~~~~~l~~----------l~~L~~L~l~~-N~~~~ 186 (263)
T 1xeu_A 154 VLDLHGNE-ITNTGGLTR----------LKKVNWIDLTG-QKCVN 186 (263)
T ss_dssp EEECTTSC-CCBCTTSTT----------CCCCCEEEEEE-EEEEC
T ss_pred EEECCCCc-CcchHHhcc----------CCCCCEEeCCC-CcccC
Confidence 99999853 444432222 44699999988 44443
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.25 E-value=7.9e-11 Score=113.09 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=98.9
Q ss_pred CCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEE
Q 048062 412 LPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRL 490 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L 490 (686)
+|++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+..++.. +..+++|+.|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 347899999999765555577788889999999998776433335567888999999999988888764 3567789999
Q ss_pred eeccccccccccccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCc
Q 048062 491 EISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNK 543 (686)
Q Consensus 491 ~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 543 (686)
++++ +.+..+|..+..+++|+.|++++| .++.++.. ..+++|++|++.+|+
T Consensus 118 ~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9988 467788888888888999988885 56666543 335678888887776
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=5.4e-11 Score=112.54 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=111.0
Q ss_pred CCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEe
Q 048062 413 PPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLE 491 (686)
Q Consensus 413 ~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~ 491 (686)
++++++|+++++......+..+..+++|++|++++|......+..+..+++|++|++++|.+..++.. ...+++|+.|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 36889999998644433344567889999999998765544444567889999999999988887764 35677899999
Q ss_pred eccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEec
Q 048062 492 ISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTII 568 (686)
Q Consensus 492 l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~ 568 (686)
++++ .+..++. .+..+++|++|++++| .++.++.. ..+++|++|++++|+ + ...+++|+.|+++
T Consensus 107 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-~----------~~~~~~l~~L~~~ 173 (208)
T 2o6s_A 107 LNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP-W----------DCTCPGIRYLSEW 173 (208)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC-B----------CCCTTTTHHHHHH
T ss_pred cCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC-e----------ecCCCCHHHHHHH
Confidence 9885 5666655 4678899999999885 45566553 346789999999986 2 2456778888877
Q ss_pred cCCCceEcCCCc
Q 048062 569 NCDDVVSFPLKA 580 (686)
Q Consensus 569 ~c~~l~~~~~~~ 580 (686)
.+.--..+|...
T Consensus 174 ~n~~~g~ip~~~ 185 (208)
T 2o6s_A 174 INKHSGVVRNSA 185 (208)
T ss_dssp HHHCTTTBBCTT
T ss_pred HHhCCceeeccC
Confidence 743333455444
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=1.2e-12 Score=142.88 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=21.9
Q ss_pred CCCCcceEEEEcCccceeEccccccCCCcceeec
Q 048062 138 SSLPALCKFIIGGCKKVVWRSATDHLGSQNSVVC 171 (686)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~~ 171 (686)
...+.|+.|+++++....+|..++.+++|+.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l 379 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEP 379 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhcc
Confidence 4566677777777666666666666666666643
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.23 E-value=1.1e-10 Score=111.16 Aligned_cols=129 Identities=16% Similarity=0.301 Sum_probs=94.6
Q ss_pred CCCCCceEEecCCCCccch-HHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCC-CCCCCccE
Q 048062 412 LPPSLKSLRVGGCSKLESI-AERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGG-LPCAKLMR 489 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~-~~~~~L~~ 489 (686)
+|++++.|++++|. ++.+ +..+..+++|+.|++++|......|..+..+++|++|++++|.+..+|... ..+++|+.
T Consensus 30 l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 34688999999864 4444 446788889999999888776666778888889999999988888888754 45678888
Q ss_pred Eeeccccccccc-cccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCc
Q 048062 490 LEISYCKRLQVL-PKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNK 543 (686)
Q Consensus 490 L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 543 (686)
|++++| .+..+ |..+..+++|+.|++++| .++.++.. ..+++|++|++++|+
T Consensus 109 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 888885 44444 557778888888888884 45555542 335667777777765
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=3.8e-11 Score=117.88 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=110.5
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecc
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISY 494 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 494 (686)
.+..++++++ .++.++ .+..+++|++|++++|. +..++ .+..+++|+.|++++|.+..++. ...+++|+.|++++
T Consensus 20 ~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 4556666664 444454 46678888888888874 44454 57778888888888888777776 55667888888887
Q ss_pred ccccccccccccCCCCCCeEEecCCCCCCCCCCCCCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCce
Q 048062 495 CKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEEDGLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVV 574 (686)
Q Consensus 495 ~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~ 574 (686)
| .++.+|.. .. ++|++|++++| .++.++....+++|++|++++|. +++ ++ .+..+++|+.|++++| .+.
T Consensus 95 N-~l~~l~~~-~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~-~~----~l~~l~~L~~L~L~~N-~i~ 163 (263)
T 1xeu_A 95 N-RLKNLNGI-PS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNK-LKS-IV----MLGFLSKLEVLDLHGN-EIT 163 (263)
T ss_dssp S-CCSCCTTC-CC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSC-CCB-CG----GGGGCTTCCEEECTTS-CCC
T ss_pred C-ccCCcCcc-cc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCc-CCC-Ch----HHccCCCCCEEECCCC-cCc
Confidence 4 56666542 23 77888888875 45556555566777777777776 542 22 3566777777777773 454
Q ss_pred EcCCCcCCCCCCCCCCCccccceeeccccccccccc
Q 048062 575 SFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLS 610 (686)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~ 610 (686)
.+ ... ..+++|+.|++++ +.+...|
T Consensus 164 ~~-~~l---------~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 164 NT-GGL---------TRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp BC-TTS---------TTCCCCCEEEEEE-EEEECCC
T ss_pred ch-HHh---------ccCCCCCEEeCCC-CcccCCc
Confidence 44 222 2456777777777 3444444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=4e-11 Score=123.87 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=101.4
Q ss_pred CCCCCceEEecCCCCccch-HHhhc-CCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCcc
Q 048062 412 LPPSLKSLRVGGCSKLESI-AERLD-NNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLM 488 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l-~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~ 488 (686)
+|+.++.|++++|. ++.+ +..+. .+++|+.|++++|......+..+..+++|+.|++++|.+..++. .+..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 34667888888864 4444 44455 78888888888876655555667778888888888887777766 345567888
Q ss_pred EEeeccccccccc-cccccCCCCCCeEEecCCCCCCCCCCCC-----CCCCCceeeccCCcchhhhhhhcccccCCCCC-
Q 048062 489 RLEISYCKRLQVL-PKGLHNLTSLQQLRIGKGVELPSLEEDG-----LPTNLHSLEINSNKEIWKSMIERGRGFHRFSS- 561 (686)
Q Consensus 489 ~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~~-----~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~- 561 (686)
.|++++| .+..+ +..+..+++|+.|++++| .++.++... .+++|+.|++++|. ++ .++. ..+..++.
T Consensus 116 ~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~-~l~~--~~~~~l~~~ 189 (361)
T 2xot_A 116 VLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK-LK-KLPL--TDLQKLPAW 189 (361)
T ss_dssp EEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC-CC-CCCH--HHHHHSCHH
T ss_pred EEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC-CC-ccCH--HHhhhccHh
Confidence 8888875 34444 557778888888888874 566665542 36788888888876 54 2332 24455555
Q ss_pred -ccEEEeccC
Q 048062 562 -LRQLTIINC 570 (686)
Q Consensus 562 -L~~L~i~~c 570 (686)
|+.|++.++
T Consensus 190 ~l~~l~l~~N 199 (361)
T 2xot_A 190 VKNGLYLHNN 199 (361)
T ss_dssp HHTTEECCSS
T ss_pred hcceEEecCC
Confidence 367777774
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.19 E-value=1.1e-10 Score=112.11 Aligned_cols=147 Identities=22% Similarity=0.277 Sum_probs=109.1
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCC-CCCCCccEEeec
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGG-LPCAKLMRLEIS 493 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~ 493 (686)
+.+.++.++ ..++.+|..+ .++|++|++++|......|..+..+++|+.|++++|.+..+|... ..+++|+.|+++
T Consensus 20 s~~~v~c~~-~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccC-CCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777777 4677777544 388999999998877766777888999999999999888887643 567899999998
Q ss_pred cccccccccc-cccCCCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccC
Q 048062 494 YCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 494 ~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
+| .++.++. .+..+++|++|++++| .++.+|.. ..+++|++|++++|. ++ .++. ..+..+++|+.|+++++
T Consensus 97 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~-~~~~--~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 97 TN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LK-SIPH--GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CC-CCCT--TTTTTCTTCCEEECTTS
T ss_pred CC-cCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CC-ccCH--HHHhCCCCCCEEEeeCC
Confidence 85 6666655 4678889999999885 46666543 346788888888876 55 3333 35677778888888774
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=4.9e-13 Score=145.92 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=67.1
Q ss_pred CCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecc
Q 048062 415 SLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISY 494 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~ 494 (686)
.|+.|++++| .++.+|. ++.+++|+.|++++|... .+|..++.+++|+.|++++|.++.+| ....+++|+.|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 5777777775 4555665 677777777777776544 66666777777777777777766666 455566777777776
Q ss_pred ccccccc--cccccCCCCCCeEEecCCC
Q 048062 495 CKRLQVL--PKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 495 ~~~l~~l--~~~l~~l~~L~~L~l~~c~ 520 (686)
| .+..+ |..+..+++|+.|++++|+
T Consensus 518 N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 518 N-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp S-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 3 44444 6666677777777776643
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=1.3e-10 Score=110.66 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=47.7
Q ss_pred hhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCC
Q 048062 194 LILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLS 273 (686)
Q Consensus 194 L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~ 273 (686)
|+.+++++|.+..+.+..+..+++|++|++++|. ++.+|... +..+ ++|++|++++|......|..+..++
T Consensus 58 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~----f~~l----~~L~~L~L~~N~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSL----FEGL----FSLQLLLLNANKINCLRVDAFQDLH 128 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTT----TTTC----TTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhH----ccCC----CCCCEEECCCCCCCEeCHHHcCCCC
Confidence 3333444444444444445555555555555553 55544431 3333 5555555555543222233444555
Q ss_pred CccEEeccCCCCCccCCC--CCCCCCCcEEeccc
Q 048062 274 SLREIEIYKCSSLVSFPE--VALPSKLKKIQIRE 305 (686)
Q Consensus 274 ~L~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~ 305 (686)
+|++|++++|. ++.++. +..+++|+.|++++
T Consensus 129 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 129 NLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 55555555543 344332 33344445554444
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=4e-10 Score=107.33 Aligned_cols=128 Identities=15% Similarity=0.114 Sum_probs=60.3
Q ss_pred CCCceEEecCCCCccch-H-HhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEE
Q 048062 414 PSLKSLRVGGCSKLESI-A-ERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRL 490 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l-~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L 490 (686)
+.+++|++++|. ++.+ + ..+..+++|++|++++|......+..+..+++|++|++++|.+..++.. +..+++|++|
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 344555555532 2222 1 2244555555555555443333333455555555555555555544442 3334455555
Q ss_pred eeccccccccccccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCc
Q 048062 491 EISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNK 543 (686)
Q Consensus 491 ~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 543 (686)
++++|......|..+..+++|++|++++| .++.++.. ..+++|++|++++|+
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 55553222222344555555555555553 33333221 234556666666554
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1.5e-10 Score=119.60 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=78.2
Q ss_pred chhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccc
Q 048062 190 KLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSS 269 (686)
Q Consensus 190 ~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~ 269 (686)
++.+|+.+++++|.+..+++..+..+++|++|+|++|. ++.++... +..+ ++|++|++++|......|..+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----~~~l----~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL----FSDL----QALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT----TTTC----TTCCEEECCSSCCCEECTTTT
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHH----hCCC----cCCCEEECCCCcccEECHHHh
Confidence 44444555666666666666666777777777777764 66665532 4555 777777777775433335566
Q ss_pred cCCCCccEEeccCCCCCccCCCC-----CCCCCCcEEeccccccccccchhhhcccCCC--ccEEeEecCC
Q 048062 270 LSLSSLREIEIYKCSSLVSFPEV-----ALPSKLKKIQIRECDALKSLPQAWMCDNNSS--LEILKIWDCH 333 (686)
Q Consensus 270 ~~l~~L~~L~l~~~~~l~~lp~~-----~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~--L~~L~l~~~~ 333 (686)
..+++|++|++++|. ++.+|.- ..+++|+.|+++++ .+..++.... ..++. ++.|++.+++
T Consensus 133 ~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDL-QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHH-HHSCHHHHTTEECCSSC
T ss_pred CCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHh-hhccHhhcceEEecCCC
Confidence 677777777777764 6666641 34667777777763 4555553222 13443 3556665543
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.11 E-value=5.8e-10 Score=106.24 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=100.6
Q ss_pred ceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccc-ccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeecc
Q 048062 417 KSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISY 494 (686)
Q Consensus 417 ~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~ 494 (686)
+.++++++ .++.+|..+ .+.++.|++++|......+ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 14 ~~l~~s~n-~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCC-CcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46666663 455566433 3456788888876554433 346778888888888888887766 456677888888888
Q ss_pred cccccccc-ccccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccC
Q 048062 495 CKRLQVLP-KGLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINC 570 (686)
Q Consensus 495 ~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c 570 (686)
| .+..++ ..+..+++|++|++++| .++.++.. ..+++|++|++++|. ++...+. .+..+++|+.|+++++
T Consensus 91 N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 91 N-RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPG---AFDTLHSLSTLNLLAN 163 (220)
T ss_dssp S-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTT---TTTTCTTCCEEECCSC
T ss_pred C-ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHH---HhcCCCCCCEEEecCc
Confidence 5 444444 45778888888888885 45555332 346788888888887 6534344 6778888888888884
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=8.8e-11 Score=106.84 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=58.7
Q ss_pred cccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCCCCCCCCC---CCCCC
Q 048062 455 PSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLE---EDGLP 531 (686)
Q Consensus 455 ~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~---~~~~~ 531 (686)
|..+..+++|+.|++++|.+..+ .....+++|+.|++++|.....+|..+..+++|++|++++| .++.++ ....+
T Consensus 42 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l 119 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKL 119 (168)
T ss_dssp SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSC
T ss_pred HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcC
Confidence 33334444455555555544444 33333445555555553222224444444555555555554 333332 12334
Q ss_pred CCCceeeccCCcchhhhhhhcccccCCCCCccEEEeccCCCceEcCC
Q 048062 532 TNLHSLEINSNKEIWKSMIERGRGFHRFSSLRQLTIINCDDVVSFPL 578 (686)
Q Consensus 532 ~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~i~~c~~l~~~~~ 578 (686)
++|++|++++|. +....+.....+..+++|+.|++++| .+.++|.
T Consensus 120 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 120 ECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp SCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 566666666665 33222200014667788888888885 4555554
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=4.4e-10 Score=102.20 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=88.7
Q ss_pred cCCCCCCceEEecCCCCc-cchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeee-cCCCCCCCCCc
Q 048062 410 GNLPPSLKSLRVGGCSKL-ESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVS-FPQGGLPCAKL 487 (686)
Q Consensus 410 ~~~~~~L~~L~l~~~~~~-~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-l~~~~~~~~~L 487 (686)
+..|++|++|++++|... ..+|..+..+++|+.|++++|... .+ ..+..+++|++|++++|.+.. +|.....+++|
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 344577888888886433 266766777788888888877643 33 567777888888888887776 44444446788
Q ss_pred cEEeecccccccccc--ccccCCCCCCeEEecCCCCCCCCCC-----CCCCCCCceeeccCCc
Q 048062 488 MRLEISYCKRLQVLP--KGLHNLTSLQQLRIGKGVELPSLEE-----DGLPTNLHSLEINSNK 543 (686)
Q Consensus 488 ~~L~l~~~~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~~~~-----~~~~~~L~~L~l~~~~ 543 (686)
+.|++++| .++.+| ..+..+++|+.|++++|+ +..++. ...+++|++|++.+|.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888775 566655 567778888888888764 444443 2456778888888776
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.3e-09 Score=111.03 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=53.0
Q ss_pred cCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCCC--
Q 048062 214 DICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFPE-- 291 (686)
Q Consensus 214 ~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-- 291 (686)
.+++++.|.+++. +.. ..+..+...+++|+.|+|++|.. ..+...-+.++.++.+.+..+ .+|.
T Consensus 23 ~~~~l~~L~l~g~--i~~-------~~~~~l~~~l~~L~~LdLs~n~i-~~~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGK--LNA-------EDFRHLRDEFPSLKVLDISNAEI-KMYSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEE--ECH-------HHHHHHHHSCTTCCEEEEEEEEE-CCEEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEecc--ccH-------HHHHHHHHhhccCeEEecCccee-EEecCcccccccccccccccc----ccCHHH
Confidence 3566777777653 211 11222222237788888887753 311111122222333333332 2332
Q ss_pred CCC--------CCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc
Q 048062 292 VAL--------PSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV 341 (686)
Q Consensus 292 ~~~--------l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 341 (686)
+.. +++|+.|++.+ .++.++.... .++++|+.+++.++. +..++..
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~n~-i~~i~~~ 142 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRKKT-APNLLPE 142 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCCSS-CCEECTT
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCCCC-ccccchh
Confidence 334 66777777765 4555554332 256777777776543 4444443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=2.8e-10 Score=101.15 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=39.7
Q ss_pred hhcCcCccEeeccccccccc-ccchhhHHHHHHhhhcCCCccEEEccCCCCCcccc--ccccCCCCccEEeccCCCCCcc
Q 048062 212 LQDICSLKSLEIRSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP--QSSLSLSSLREIEIYKCSSLVS 288 (686)
Q Consensus 212 ~~~~~~L~~L~L~~~~~l~~-lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p--~~~~~l~~L~~L~l~~~~~l~~ 288 (686)
+..+++|++|++++|. ++. +|.. +..+ ++|++|++++|.. ..+| ..++.+++|++|++++|. ++.
T Consensus 60 ~~~l~~L~~L~Ls~n~-i~~~~~~~-----~~~l----~~L~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~-l~~ 127 (149)
T 2je0_A 60 LPKLNKLKKLELSDNR-VSGGLEVL-----AEKC----PNLTHLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCE-VTN 127 (149)
T ss_dssp CCCCTTCCEEECCSSC-CCSCTHHH-----HHHC----TTCCEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTCG-GGG
T ss_pred hhcCCCCCEEECCCCc-ccchHHHH-----hhhC----CCCCEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCCc-ccc
Confidence 3455566666666554 443 3322 3334 5666666666542 4433 445555566666665553 444
Q ss_pred CCC-----CCCCCCCcEEec
Q 048062 289 FPE-----VALPSKLKKIQI 303 (686)
Q Consensus 289 lp~-----~~~l~~L~~L~l 303 (686)
+|. ++.+++|+.|++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp STTHHHHHHHHCTTCCEETT
T ss_pred hHHHHHHHHHHCCCcccccC
Confidence 433 333444444444
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=3.7e-10 Score=100.37 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=28.4
Q ss_pred cccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccCCCCCCeEEecCC
Q 048062 455 PSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKG 519 (686)
Q Consensus 455 ~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c 519 (686)
|..+..+++|+.|++++|.+..+ .....+++|+.|++++|.....+|..+..+++|++|++++|
T Consensus 35 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 35 EGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp CSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred HHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 33334444444444444444443 22333445555555543222224444444555555555553
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=5.9e-10 Score=102.13 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=48.8
Q ss_pred hhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccc--cccCCCCc
Q 048062 198 TKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQ--SSLSLSSL 275 (686)
Q Consensus 198 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~--~~~~l~~L 275 (686)
++++|.+..+ ..+..+++|++|++++|. ++.+|.. .+..+ ++|++|++++|.. ..+|. .+..+++|
T Consensus 48 ~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l----~~L~~L~L~~N~i-~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 48 DFSDNEIRKL--DGFPLLRRLKTLLVNNNR-ICRIGEG----LDQAL----PDLTELILTNNSL-VELGDLDPLASLKSL 115 (176)
T ss_dssp ECCSSCCCEE--CCCCCCSSCCEEECCSSC-CCEECSC----HHHHC----TTCCEEECCSCCC-CCGGGGGGGGGCTTC
T ss_pred ECCCCCCCcc--cccccCCCCCEEECCCCc-ccccCcc----hhhcC----CCCCEEECCCCcC-CcchhhHhhhcCCCC
Confidence 3444444433 224555666666666654 5555543 13444 6666666666543 55554 45556666
Q ss_pred cEEeccCCCCCccCCC-----CCCCCCCcEEecccc
Q 048062 276 REIEIYKCSSLVSFPE-----VALPSKLKKIQIREC 306 (686)
Q Consensus 276 ~~L~l~~~~~l~~lp~-----~~~l~~L~~L~l~~~ 306 (686)
+.|++++|+ +..+|. +..+++|+.|+++++
T Consensus 116 ~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 116 TYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 666666654 344443 333455555555443
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=2.3e-09 Score=109.13 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=37.1
Q ss_pred CCCccEEEeccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccccccc-ccCCCCCcC-EEeecCCCCCCcCCCC
Q 048062 559 FSSLRQLTIINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDLQYLT-SLYLLECPKLKYFPEK 636 (686)
Q Consensus 559 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l~~L~-~L~i~~c~~l~~l~~~ 636 (686)
+++|+.|++.+ ++++.++.... ..+++|+++++.+ +++.|+. .|.++++|+ .+.+.+ .++.++..
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF--------~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTF--------AQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTT--------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCC-CCcceecHhhh--------hCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchh
Confidence 45555555554 23555544221 2344555555554 2555543 234455555 555554 45555444
Q ss_pred CC--cCccceeeec
Q 048062 637 GL--PSSLLLLIIW 648 (686)
Q Consensus 637 ~~--~~~L~~L~i~ 648 (686)
.+ +++|+.+++.
T Consensus 292 aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 292 AFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTTCTTEEEEEEC
T ss_pred hhhCCccCCEEEeC
Confidence 33 4455555553
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=3.6e-09 Score=98.36 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=89.3
Q ss_pred ccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHH--hhcCCCCCCeeeecccCCccccccc
Q 048062 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAE--RLDNNTSLETIAVSFCRNLKILPSG 457 (686)
Q Consensus 380 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~--~l~~l~~L~~L~l~~~~~~~~~~~~ 457 (686)
-+.+++++ +.++. +| ..++.++++|+++++ .++.++. .+..+++|++|++++|......|..
T Consensus 10 ~~~l~~s~-~~l~~-ip-------------~~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 10 GTTVDCTG-RGLKE-IP-------------RDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp TTEEECTT-SCCSS-CC-------------SCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred CCEEEcCC-CCcCc-Cc-------------cCCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhH
Confidence 35666666 45555 43 123358889999886 4555543 3788888999999888777666778
Q ss_pred ccCCCCCcEEEecCceeeecCCC-CCCCCCccEEeeccccccccccccccCCCCCCeEEecCCC
Q 048062 458 LHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYCKRLQVLPKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 458 l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~ 520 (686)
+..+++|++|++++|.+..++.. +..+++|+.|+++++......|..+..+++|++|++++++
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88888888888888888877664 4566788888888854333446677778888888888764
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=5.9e-09 Score=96.86 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=76.9
Q ss_pred CCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEE
Q 048062 412 LPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRL 490 (686)
Q Consensus 412 ~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L 490 (686)
+|+++++|+++++ .++.+|..+..+++|+.|++++|......+..+..+++|++|++++|.+..++. .+..+++|+.|
T Consensus 29 ~~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 29 IPRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 3467888888885 556777778888888888888877665555667788888888888888777765 34456777888
Q ss_pred eeccccccccccc-cccCCCCCCeEEecCCC
Q 048062 491 EISYCKRLQVLPK-GLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 491 ~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 520 (686)
++++ +.+..+|. .+..+++|+.|++++++
T Consensus 108 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 108 SLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 8877 35555554 45667777777776653
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.91 E-value=1.4e-09 Score=99.66 Aligned_cols=125 Identities=20% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCC-CCCCCccEEee
Q 048062 414 PSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGG-LPCAKLMRLEI 492 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l 492 (686)
++|++|++++| .++.++......++|+.|++++|.... + ..+..+++|++|++++|.+..+|... ..+++|+.|++
T Consensus 19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 56777777775 344454322333477777777765443 3 45677778888888888777777544 55667888888
Q ss_pred ccccccccccc--cccCCCCCCeEEecCCCCCCCCCC-----CCCCCCCceeeccCCc
Q 048062 493 SYCKRLQVLPK--GLHNLTSLQQLRIGKGVELPSLEE-----DGLPTNLHSLEINSNK 543 (686)
Q Consensus 493 ~~~~~l~~l~~--~l~~l~~L~~L~l~~c~~l~~~~~-----~~~~~~L~~L~l~~~~ 543 (686)
++| .+..+|. .+..+++|+.|++++|+ +..++. ...+++|+.|++++|.
T Consensus 96 ~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 96 TNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 774 5566665 66777777777777754 333332 1234555666665555
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.90 E-value=4.4e-10 Score=126.62 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=100.7
Q ss_pred cchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeeccccccccccccccC
Q 048062 428 ESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKGLHN 507 (686)
Q Consensus 428 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~ 507 (686)
...+..+..+++|+.|++++|... .+|..+..+++|++|++++|.+..+|..+..+++|+.|++++| .+..+|..+..
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~ 291 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGS 291 (727)
T ss_dssp --------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGG
T ss_pred ecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcC
Confidence 344667888999999999987754 6777777889999999999988888887778889999999985 56688888999
Q ss_pred CCCCCeEEecCCCCCCCCCCC-CCCCCCceeeccCCcchhhhhhhcccccCCCC-CccEEEeccCCCceEcCCCcCCCCC
Q 048062 508 LTSLQQLRIGKGVELPSLEED-GLPTNLHSLEINSNKEIWKSMIERGRGFHRFS-SLRQLTIINCDDVVSFPLKADDKGS 585 (686)
Q Consensus 508 l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~-~L~~L~i~~c~~l~~~~~~~~~~~~ 585 (686)
+++|++|++++| .++.+|.. +.+++|++|++++|. +.+.++. .+..+. .+..++++++ .+.
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~---~~~~~~~~~~~l~l~~N-~l~----------- 354 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLK---ILTEKSVTGLIFYLRDN-RPE----------- 354 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC-CCSHHHH---HHHHHHHHHHHHHHHHC-CCC-----------
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc-cCCCChH---HHhhcchhhhHHhhccC-ccc-----------
Confidence 999999999986 56677754 457789999999988 6545554 222221 1122455553 221
Q ss_pred CCCCCCccccceeecccc
Q 048062 586 GTTLPLPASLTTLWIFNF 603 (686)
Q Consensus 586 ~~~~~~~~~L~~L~l~~~ 603 (686)
+..|..|+.|++.++
T Consensus 355 ---~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 355 ---IPLPHERRFIEINTD 369 (727)
T ss_dssp ---CCCCCC---------
T ss_pred ---CcCccccceeEeecc
Confidence 125567777777764
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.85 E-value=1.9e-09 Score=121.52 Aligned_cols=117 Identities=16% Similarity=0.082 Sum_probs=87.5
Q ss_pred CccchhhhhhchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccc
Q 048062 187 QLPKLEELILSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP 266 (686)
Q Consensus 187 ~l~~l~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p 266 (686)
.+..+..|+.|++++|.+..++... ..+++|++|+|++|. ++.+|.. +..+ ++|++|+|++|.. ..+|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~-l~~lp~~-----~~~l----~~L~~L~Ls~N~l-~~lp 286 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNS-LTELPAE-----IKNL----SNLRVLDLSHNRL-TSLP 286 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSC-CSCCCGG-----GGGG----TTCCEEECTTSCC-SSCC
T ss_pred hhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCc-CcccChh-----hhCC----CCCCEEeCcCCcC-CccC
Confidence 5666677777788888887776654 478888888888885 7788765 6777 8888888888864 6888
Q ss_pred ccccCCCCccEEeccCCCCCccCCC-CCCCCCCcEEeccccccccccchhh
Q 048062 267 QSSLSLSSLREIEIYKCSSLVSFPE-VALPSKLKKIQIRECDALKSLPQAW 316 (686)
Q Consensus 267 ~~~~~l~~L~~L~l~~~~~l~~lp~-~~~l~~L~~L~l~~~~~l~~l~~~~ 316 (686)
..++.+++|++|+|++|. ++.+|. ++.+++|+.|+++++.....+|..+
T Consensus 287 ~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 888888888888888884 677875 7778888888888865444444444
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.83 E-value=5.9e-09 Score=96.87 Aligned_cols=124 Identities=12% Similarity=0.065 Sum_probs=77.8
Q ss_pred hchhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCc
Q 048062 196 LSTKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSL 275 (686)
Q Consensus 196 ~l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L 275 (686)
.+++++|.+..++... .++|++|+++++. ++.++.. ..+..+ ++|++|++++|......|..+..+++|
T Consensus 12 ~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~-i~~~~~~---~~~~~l----~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDI---PLHTTELLLNDNE-LGRISSD---GLFGRL----PHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp EEECTTSCCSSCCSCC---CTTCSEEECCSCC-CCSBCCS---CSGGGC----TTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred EEEcCCCCcCcCccCC---CCCCCEEECCCCc-CCccCCc---cccccC----CCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 4556666666665532 3477778887774 6666542 124555 778888887776533346667777788
Q ss_pred cEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 276 REIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 276 ~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
++|++++|. ++.++. +..+++|++|+++++..-...+..+. .+++|++|++++++
T Consensus 81 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 81 QELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSST--TCTTCCEEECTTCC
T ss_pred CEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh--cCCCCCEEEeCCCC
Confidence 888887775 555554 55677777777777533223344443 56777777776654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.81 E-value=2.9e-10 Score=106.51 Aligned_cols=146 Identities=18% Similarity=0.258 Sum_probs=105.7
Q ss_pred CCceEEecCC-CCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeec
Q 048062 415 SLKSLRVGGC-SKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEIS 493 (686)
Q Consensus 415 ~L~~L~l~~~-~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~ 493 (686)
.++...+.+. +.++.+|..+..+++|++|++++|... .+| .+..+++|+.|++++|.+..+|.....+++|+.|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 4566666553 245667778889999999999987544 466 7778899999999999888888765556789999999
Q ss_pred cccccccccccccCCCCCCeEEecCCCCCCCCCC---CCCCCCCceeeccCCcchhhhhhh-------cccccCCCCCcc
Q 048062 494 YCKRLQVLPKGLHNLTSLQQLRIGKGVELPSLEE---DGLPTNLHSLEINSNKEIWKSMIE-------RGRGFHRFSSLR 563 (686)
Q Consensus 494 ~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~-------~~~~l~~l~~L~ 563 (686)
+| .+..+| .+..+++|++|++++| .+..++. ...+++|++|++++|+ +....+. ....+..+++|+
T Consensus 102 ~N-~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 102 YN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp EE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred CC-cCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcE
Confidence 85 667776 5888899999999985 4555443 3456788899998887 5433322 001356677777
Q ss_pred EEE
Q 048062 564 QLT 566 (686)
Q Consensus 564 ~L~ 566 (686)
.|+
T Consensus 178 ~Ld 180 (198)
T 1ds9_A 178 KLD 180 (198)
T ss_dssp EEC
T ss_pred EEC
Confidence 776
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.4e-08 Score=94.30 Aligned_cols=120 Identities=15% Similarity=0.120 Sum_probs=72.8
Q ss_pred chhhhhhhhcccchhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccc-ccccCCCCc
Q 048062 197 STKEQTYIWKSHDGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLP-QSSLSLSSL 275 (686)
Q Consensus 197 l~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p-~~~~~l~~L 275 (686)
+++++|.+..++... .++|++|+++++. ++.+|.. +..+ ++|++|++++|.. ..++ ..+..+++|
T Consensus 15 l~~~~~~l~~ip~~~---~~~l~~L~L~~n~-i~~ip~~-----~~~l----~~L~~L~Ls~N~i-~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGI---PRDVTELYLDGNQ-FTLVPKE-----LSNY----KHLTLIDLSNNRI-STLSNQSFSNMTQL 80 (193)
T ss_dssp EECTTSCCSSCCSCC---CTTCCEEECCSSC-CCSCCGG-----GGGC----TTCCEEECCSSCC-CCCCTTTTTTCTTC
T ss_pred EEcCCCCCCcCCCCC---CCCCCEEECCCCc-CchhHHH-----hhcc----cCCCEEECCCCcC-CEeCHhHccCCCCC
Confidence 445555555555432 3567777777764 6666643 5555 7777777777654 4443 346677777
Q ss_pred cEEeccCCCCCccCCC--CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 276 REIEIYKCSSLVSFPE--VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 276 ~~L~l~~~~~l~~lp~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
++|++++|. ++.++. +..+++|+.|+++++ .+..++.... ..+++|+.|++++++
T Consensus 81 ~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAF-NDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred CEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhh-hcCccccEEEeCCCC
Confidence 777777764 555554 555677777777773 4555554322 146666777666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.81 E-value=3.2e-08 Score=90.60 Aligned_cols=104 Identities=24% Similarity=0.317 Sum_probs=56.5
Q ss_pred CCCceEEecCCCCccch-HHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEe
Q 048062 414 PSLKSLRVGGCSKLESI-AERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLE 491 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~ 491 (686)
+++++|+++++. ++.+ +..+..+++|++|++++|......+..+..+++|+.|++++|.++.++.. ...+++|+.|+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 567777777754 3333 33345666666666666544333333345566666666666666655543 23445666666
Q ss_pred ecccccccccccc-ccCCCCCCeEEecCC
Q 048062 492 ISYCKRLQVLPKG-LHNLTSLQQLRIGKG 519 (686)
Q Consensus 492 l~~~~~l~~l~~~-l~~l~~L~~L~l~~c 519 (686)
++++ .++.+|.. +..+++|++|++++|
T Consensus 107 l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 107 LDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 6653 44444442 344555555555554
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=1e-10 Score=109.51 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=63.9
Q ss_pred hhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCccccccccCCCCccEEeccCCCCCccCC
Q 048062 211 LLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQSSLSLSSLREIEIYKCSSLVSFP 290 (686)
Q Consensus 211 ~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp 290 (686)
.+..+++|++|++++|. ++.+| . +..+ ++|++|++++|. +..+|..+..+++|++|++++|. ++.+|
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~-~-----~~~l----~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~ 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS-S-----LSGM----ENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLS 109 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC-C-----HHHH----TTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc-c-----cccC----CCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCC
Confidence 45666777777776664 66665 3 5556 667777777664 35666655556667777776663 55555
Q ss_pred CCCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCC
Q 048062 291 EVALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCH 333 (686)
Q Consensus 291 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 333 (686)
.++.+++|+.|+++++ .+..++..-....+++|++|++++|+
T Consensus 110 ~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 5555666666666663 34444331111245666666666554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.76 E-value=5.3e-08 Score=89.09 Aligned_cols=123 Identities=21% Similarity=0.283 Sum_probs=75.0
Q ss_pred CceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEeecc
Q 048062 416 LKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISY 494 (686)
Q Consensus 416 L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~ 494 (686)
.+.++++++ .++.+|..+ .++|++|++++|......+..+..+++|++|++++|.+..++.. ...+++|+.|++++
T Consensus 9 ~~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456666663 455555332 36778888877665443334456777778888777777766654 34566777777777
Q ss_pred ccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCc
Q 048062 495 CKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNK 543 (686)
Q Consensus 495 ~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 543 (686)
+ .++.+|. .+..+++|++|++++| .++.++.. ..+++|++|++++|+
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred C-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 4 4545544 3566777777777764 44455443 224566666666655
No 137
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.68 E-value=1.4e-08 Score=84.25 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHhhhhcccchhccccch
Q 048062 12 SVDLLVNKLASEGILFFARQEKIQDDLMEWENMLEMIKAVLDDAEEK--KTTNRFVKKWLGKLQNLAYDVEDLLDQFQTE 89 (686)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~a~~~~~~~k--~~~~~l~~~w~~~l~~~~~~~~dvl~~l~~~ 89 (686)
+++++++|+.+....|+....|+.++++.|++.+..++|++.+++.+ +..++.++.|..++++.+||++|++|++.+.
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999998 6689999999999999999999999999765
Q ss_pred H
Q 048062 90 A 90 (686)
Q Consensus 90 ~ 90 (686)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 5
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=1.8e-06 Score=89.65 Aligned_cols=255 Identities=16% Similarity=0.208 Sum_probs=139.6
Q ss_pred cCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCcccccc-ccCCCCccEEeccCCCCCccCCC-
Q 048062 214 DICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLVKLPQS-SLSLSSLREIEIYKCSSLVSFPE- 291 (686)
Q Consensus 214 ~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~lp~- 291 (686)
.+..++.+.+.+ .++.|+... +.. .+|+.+.+..+ +..++.. +.. .+|+.+.+.+ .++.++.
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~a----F~~-----~~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~ 174 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDA----FRN-----SQIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKED 174 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTT----TTT-----CCCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSS
T ss_pred ecCCccEEEECC--ccCEehHhh----ccc-----CCccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHH
Confidence 345666666654 255555432 221 35666666553 3444442 223 3566666664 3555543
Q ss_pred -CCCCCCCcEEeccccccccccchhhhcccCCCccEEeEecCCCCcccccc--cCCCcccEEeeccccCccccccccccc
Q 048062 292 -VALPSKLKKIQIRECDALKSLPQAWMCDNNSSLEILKIWDCHSLTYIAGV--QLPPSLKRLEIYLCYNLRTLTVEEGIQ 368 (686)
Q Consensus 292 -~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~~ 368 (686)
+..+++|+.+++.+ +.++.++.... ...+|+.+.+.. .++.++.. ..+++|+.+.+.. +++.++ ...+
T Consensus 175 aF~~c~~L~~l~l~~-n~l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~--~~aF 245 (401)
T 4fdw_A 175 IFYYCYNLKKADLSK-TKITKLPASTF--VYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIG--QEAF 245 (401)
T ss_dssp TTTTCTTCCEEECTT-SCCSEECTTTT--TTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEEC--TTTT
T ss_pred HhhCcccCCeeecCC-CcceEechhhE--eecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcc--cccc
Confidence 44466677777665 34555554443 245666666642 24444433 2233444444432 122222 1111
Q ss_pred ccccccccCCCccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccch-HHhhcCCCCCCeeeecc
Q 048062 369 CSSSRRYASSLLEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESI-AERLDNNTSLETIAVSF 447 (686)
Q Consensus 369 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~ 447 (686)
. . .+|+.+.+.+ .++.+ ...+..|++|+.+.+.+
T Consensus 246 ~-------~------------------------------------~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 246 R-------E------------------------------------SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp T-------T------------------------------------CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEES
T ss_pred c-------c------------------------------------CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCC
Confidence 0 0 3455555533 23333 34466777777777766
Q ss_pred cCCc-----ccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCC
Q 048062 448 CRNL-----KILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 448 ~~~~-----~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 520 (686)
+... ..-+..|..+++|+.+.+.+ ++..|+.. +..+++|+.+.+.. +++.+.. .|.++ +|+.+.+.++
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n- 355 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT- 355 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-
Confidence 4332 12235677788888888874 46667663 34467888888855 3655544 67778 8999999885
Q ss_pred CCCCCCCC---CCCCCCceeeccCCc
Q 048062 521 ELPSLEED---GLPTNLHSLEINSNK 543 (686)
Q Consensus 521 ~l~~~~~~---~~~~~L~~L~l~~~~ 543 (686)
.+..++.. +++.+++.|.+..+.
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCcccccccccCCCCCccEEEeCHHH
Confidence 34444433 344678889888765
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.66 E-value=9.2e-07 Score=91.94 Aligned_cols=211 Identities=11% Similarity=0.122 Sum_probs=127.8
Q ss_pred CCceEEecCCCCccch-HHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEee
Q 048062 415 SLKSLRVGGCSKLESI-AERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEI 492 (686)
Q Consensus 415 ~L~~L~l~~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l 492 (686)
+|+.+.+.. .++.+ ...+..|++|+.+++.++. +..++.......+|+.+.+..+ +..|+. .+..+++|+.+++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 577777765 34444 3456777888888877643 3344433333577787777644 556655 3345667888877
Q ss_pred ccccccccccc-cccCCCCCCeEEecCCCCCCCCCCC--CCCCCCceeeccCCcch---hhhhhhcccccCCCCCccEEE
Q 048062 493 SYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEED--GLPTNLHSLEINSNKEI---WKSMIERGRGFHRFSSLRQLT 566 (686)
Q Consensus 493 ~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l---~~~~~~~~~~l~~l~~L~~L~ 566 (686)
.+ +++.++. .|.+ .+|+.+.+.+ .++.++.. ..+++|+++++.++..- ...++. ..+.++++|+.+.
T Consensus 234 ~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~ 306 (401)
T 4fdw_A 234 PE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFE 306 (401)
T ss_dssp CT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEEC
T ss_pred CC--CccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEE
Confidence 65 3555554 3434 6777777743 35555544 23567888887765411 002333 4677788888888
Q ss_pred eccCCCceEcCCCcCCCCCCCCCCCccccceeecccccccccccc-ccCCCCCcCEEeecCCCCCCcCCCC---CCcCcc
Q 048062 567 IINCDDVVSFPLKADDKGSGTTLPLPASLTTLWIFNFPNLERLSS-SIVDLQYLTSLYLLECPKLKYFPEK---GLPSSL 642 (686)
Q Consensus 567 i~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~L 642 (686)
+.+ +++.++... +..+++|+.+.+.. +++.++. .|.++ +|+.+++.++ .+..++.. +++..+
T Consensus 307 l~~--~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 307 IPE--SIRILGQGL--------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp CCT--TCCEECTTT--------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTC
T ss_pred eCC--ceEEEhhhh--------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCc
Confidence 774 566766533 13456788888853 5777754 45566 8888888774 45555544 234567
Q ss_pred ceeeecCC
Q 048062 643 LLLIIWEC 650 (686)
Q Consensus 643 ~~L~i~~c 650 (686)
+.|++-..
T Consensus 373 ~~l~vp~~ 380 (401)
T 4fdw_A 373 TVIRVPAE 380 (401)
T ss_dssp CEEEECGG
T ss_pred cEEEeCHH
Confidence 77777653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.63 E-value=8.4e-08 Score=87.32 Aligned_cols=100 Identities=20% Similarity=0.316 Sum_probs=61.9
Q ss_pred ceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCC-CCCCCccEEeeccc
Q 048062 417 KSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGG-LPCAKLMRLEISYC 495 (686)
Q Consensus 417 ~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~~ 495 (686)
+.++++++ .++.+|..+. ++|+.|++++|......|..+..+++|+.|++++|.+..+|... ..+++|+.|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~- 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND- 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-
Confidence 44555552 4455554332 56666666666555444556667777777777777777776643 4566777777776
Q ss_pred ccccccccc-ccCCCCCCeEEecCCC
Q 048062 496 KRLQVLPKG-LHNLTSLQQLRIGKGV 520 (686)
Q Consensus 496 ~~l~~l~~~-l~~l~~L~~L~l~~c~ 520 (686)
+.++.+|.. +..+++|++|++++++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 455555553 6667777777777753
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.62 E-value=2.8e-06 Score=88.48 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=40.1
Q ss_pred hcCCCCCCeeeecccCCccccc-ccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccc-cccCCCC
Q 048062 434 LDNNTSLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPK-GLHNLTS 510 (686)
Q Consensus 434 l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~ 510 (686)
+..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.+.++ ++.|.. .+..|.+|+.+.+.. .++.+.. .|.++++
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTT
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCC
Confidence 445555665555432 22222 33455566666666433 444444 223445666666643 2444433 5556666
Q ss_pred CCeEEecC
Q 048062 511 LQQLRIGK 518 (686)
Q Consensus 511 L~~L~l~~ 518 (686)
|+.+.+..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 66666643
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.60 E-value=1.1e-07 Score=86.29 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=58.2
Q ss_pred CceEEecCCCCccchHHhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCC-CCCCCccEEeecc
Q 048062 416 LKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGG-LPCAKLMRLEISY 494 (686)
Q Consensus 416 L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~-~~~~~L~~L~l~~ 494 (686)
.+.++++++ .++.+|..+ .++|+.|++++|......|..+..+++|++|++++|.++.+|... ..+++|+.|++++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 445555552 444455333 255666666665544444555666666777777766666666543 3556666666666
Q ss_pred ccccccccc-cccCCCCCCeEEecCCC
Q 048062 495 CKRLQVLPK-GLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 495 ~~~l~~l~~-~l~~l~~L~~L~l~~c~ 520 (686)
+.++.+|. .+..+++|++|++++++
T Consensus 88 -N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 -NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 34555544 35666666666666643
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=2e-06 Score=89.70 Aligned_cols=77 Identities=12% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCCccEEeeccccccccccc-cccCCCCCCeEEecCCCCCCCCCCCC--CCCCCceeeccCCcchhhhhhhcccccCCCC
Q 048062 484 CAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGVELPSLEEDG--LPTNLHSLEINSNKEIWKSMIERGRGFHRFS 560 (686)
Q Consensus 484 ~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~ 560 (686)
+.+|+.+.+.+ .++.++. .|.++++|+.+.+.. .++.++... .+.+|+++.+..+ ++ .+.. ..+.+++
T Consensus 296 ~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~-~I~~--~aF~~C~ 366 (394)
T 4fs7_A 296 CSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LR-KIGA--NAFQGCI 366 (394)
T ss_dssp CTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CC-EECT--TTBTTCT
T ss_pred ccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--cc-EehH--HHhhCCC
Confidence 34555555533 2333332 344555555555532 233343322 2345555555433 22 2222 3455666
Q ss_pred CccEEEecc
Q 048062 561 SLRQLTIIN 569 (686)
Q Consensus 561 ~L~~L~i~~ 569 (686)
+|+.+++.+
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 666666654
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.47 E-value=5.3e-07 Score=81.63 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=80.6
Q ss_pred ccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccccccc
Q 048062 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLH 459 (686)
Q Consensus 380 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 459 (686)
.+.+++++ +.++. +| ..+++++++|++++|...+..|..+..+++|++|++++|......+..+.
T Consensus 11 ~~~l~~s~-n~l~~-ip-------------~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 11 GTTVDCSG-KSLAS-VP-------------TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp TTEEECTT-SCCSS-CC-------------SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred CCEEEeCC-CCcCc-cC-------------ccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 56777777 56666 44 12347899999999755454477799999999999999876554445578
Q ss_pred CCCCCcEEEecCceeeecCCC-CCCCCCccEEeecccc
Q 048062 460 NLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYCK 496 (686)
Q Consensus 460 ~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~ 496 (686)
.+++|++|++++|.++.++.. +..+++|+.|++++++
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999999999999999998874 5678899999999954
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.46 E-value=5.9e-07 Score=81.62 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=78.7
Q ss_pred ccEEeccCCccccccccCCCchhhhhhhhccCCCCCCceEEecCCCCccchHHhhcCCCCCCeeeecccCCccccccccc
Q 048062 380 LEELEISGCLSLTCIFSKNELPATLESLEVGNLPPSLKSLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKILPSGLH 459 (686)
Q Consensus 380 L~~L~l~~c~~l~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 459 (686)
-+.+++++ +.++. +| . .++++|++|++++|...+..|..+..+++|++|++++|......+..+.
T Consensus 14 ~~~l~~~~-n~l~~-iP------------~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 14 QTLVNCQN-IRLAS-VP------------A-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SSEEECCS-SCCSS-CC------------S-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcEEEeCC-CCCCc-cC------------C-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence 35667766 45655 44 1 2347899999999765554577899999999999999865543334468
Q ss_pred CCCCCcEEEecCceeeecCCC-CCCCCCccEEeecccc
Q 048062 460 NLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYCK 496 (686)
Q Consensus 460 ~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~ 496 (686)
.+++|+.|++++|.+..+|.. +..+++|+.|++++++
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence 899999999999999999885 6678899999999953
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=5.8e-07 Score=80.33 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=55.0
Q ss_pred CccEEeecccccccc-ccccccCCCCCCeEEecCCCCCCCCCCCC------CCCCCceeeccCCcchhhhhhhcccccCC
Q 048062 486 KLMRLEISYCKRLQV-LPKGLHNLTSLQQLRIGKGVELPSLEEDG------LPTNLHSLEINSNKEIWKSMIERGRGFHR 558 (686)
Q Consensus 486 ~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L~l~~c~~l~~~~~~~------~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 558 (686)
+|+.|++++|. ++. --..+.++++|++|++++|..+++..... ..++|++|++++|..+++.--. .+..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHH 137 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGG
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhc
Confidence 67777777775 332 12245677788888888887666532211 1236777888877777654433 4566
Q ss_pred CCCccEEEeccCCCceE
Q 048062 559 FSSLRQLTIINCDDVVS 575 (686)
Q Consensus 559 l~~L~~L~i~~c~~l~~ 575 (686)
+++|++|++++|+.++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 77888888888876654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.17 E-value=4.2e-06 Score=85.55 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=50.1
Q ss_pred CCCceEEecCCCCccchH-HhhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEee
Q 048062 414 PSLKSLRVGGCSKLESIA-ERLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEI 492 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l 492 (686)
++|++|++++++.++.++ ..+..+++|+.|+|++|......|..|..+++|+.|++++|.+..+|...+...+|+.|++
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEe
Confidence 457777776533444443 4566677777777777655444455566677777777777766666654443334677776
Q ss_pred ccc
Q 048062 493 SYC 495 (686)
Q Consensus 493 ~~~ 495 (686)
.++
T Consensus 111 ~~N 113 (347)
T 2ifg_A 111 SGN 113 (347)
T ss_dssp CSS
T ss_pred eCC
Confidence 663
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.16 E-value=0.00014 Score=75.48 Aligned_cols=105 Identities=16% Similarity=0.272 Sum_probs=57.7
Q ss_pred hhcCCCCCCeeeecccCCcccccccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEeeccccccccccc-cccCCCC
Q 048062 433 RLDNNTSLETIAVSFCRNLKILPSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYCKRLQVLPK-GLHNLTS 510 (686)
Q Consensus 433 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~ 510 (686)
.+..+..|+.+.+.... ...-...+..+++|+.+.+.. .+..++.. +..+.+|+.+.+.+ .++.+.. .|.+|.+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 35566666666664321 111124455667777777743 34555553 33456777777754 3444433 5667777
Q ss_pred CCeEEecCCCCCCCCCCC--CCCCCCceeeccCCc
Q 048062 511 LQQLRIGKGVELPSLEED--GLPTNLHSLEINSNK 543 (686)
Q Consensus 511 L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~ 543 (686)
|+.+.+.. .++.+... ..+++|+.+++.++.
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 77777743 24444433 234566666666554
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=2.7e-06 Score=86.73 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=44.8
Q ss_pred hcCCCCCCeeeecccCC---------cccccccccCCCCCcEEEecCceeeecCCCCCCCCCccEEeecccccccccccc
Q 048062 434 LDNNTSLETIAVSFCRN---------LKILPSGLHNLRQLQEIGIWECDLVSFPQGGLPCAKLMRLEISYCKRLQVLPKG 504 (686)
Q Consensus 434 l~~l~~L~~L~l~~~~~---------~~~~~~~l~~l~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~ 504 (686)
...+++|+.|.+.+... ...+...+..+|+|+.|.+++|.-..++.. ..++|+.|++..|..-......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCCCChHHHHH
Confidence 44566777776654311 011223345567888888877721234432 2558888888765422111112
Q ss_pred c--cCCCCCCeEEecC
Q 048062 505 L--HNLTSLQQLRIGK 518 (686)
Q Consensus 505 l--~~l~~L~~L~l~~ 518 (686)
+ ..+++|++|+++.
T Consensus 213 l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHSBCTTCCEEEEEC
T ss_pred HHHccCCCCcEEEEec
Confidence 2 2677888887753
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=5.6e-06 Score=84.40 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=8.9
Q ss_pred hhcCcCccEeeccc
Q 048062 212 LQDICSLKSLEIRS 225 (686)
Q Consensus 212 ~~~~~~L~~L~L~~ 225 (686)
...+++|+.|.+.+
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 35667777776654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=0.0001 Score=76.56 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=54.9
Q ss_pred hhcCCCCCCeeeecccCCccccc-ccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccc-cccCCC
Q 048062 433 RLDNNTSLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPK-GLHNLT 509 (686)
Q Consensus 433 ~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~ 509 (686)
.+.++++|+.+.+.. .+..++ ..|.++.+|+.+.+..+ ++.|.. .+..|.+|+.+.+.. .++.+.. .|.+|+
T Consensus 283 aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCT
T ss_pred ccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCC
Confidence 355666777776642 233333 44666777887777653 555554 334567788888754 3555543 677788
Q ss_pred CCCeEEecCCCCCCCCCCCCCCCCCceeeccCC
Q 048062 510 SLQQLRIGKGVELPSLEEDGLPTNLHSLEINSN 542 (686)
Q Consensus 510 ~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~ 542 (686)
+|+.+.+.+... .+.......+|+.+.+..+
T Consensus 358 ~L~~i~~~~~~~--~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 358 ALNNIEYSGSRS--QWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEESSCHH--HHHTCBCCCCC--------
T ss_pred CCCEEEECCcee--ehhhhhccCCCCEEEeCCC
Confidence 888888776421 1111123345666655443
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.09 E-value=7.5e-07 Score=91.65 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=8.7
Q ss_pred CCccEEeccCCccccc
Q 048062 378 SLLEELEISGCLSLTC 393 (686)
Q Consensus 378 ~~L~~L~l~~c~~l~~ 393 (686)
++|++|++++| .+++
T Consensus 239 ~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 239 PSLELLHLYFN-ELSS 253 (372)
T ss_dssp SSCCEEECTTS-SCCH
T ss_pred CCCCEEeccCC-CCCH
Confidence 45777777663 4443
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=1.7e-06 Score=77.24 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=16.7
Q ss_pred CccEEeccCCCCCcc--CCCCCCCCCCcEEeccccccccc
Q 048062 274 SLREIEIYKCSSLVS--FPEVALPSKLKKIQIRECDALKS 311 (686)
Q Consensus 274 ~L~~L~l~~~~~l~~--lp~~~~l~~L~~L~l~~~~~l~~ 311 (686)
+|++|+|++|..+++ +..+..+++|++|++++|..++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 344444444444432 22233344555555555544443
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=4.2e-07 Score=93.54 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=21.3
Q ss_pred cccceeeeccCCcccc-------cccC-CCCcceEEEEcCccc
Q 048062 119 LLALEKLVIEGCEELS-------VSIS-SLPALCKFIIGGCKK 153 (686)
Q Consensus 119 l~~L~~L~l~~c~~~~-------~~l~-~l~~L~~L~l~~~~~ 153 (686)
.++|++|++++|.... ..+. ..++|++|++++|..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l 113 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL 113 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC
Confidence 4677778877775332 1222 235788888877653
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.97 E-value=1.6e-05 Score=81.16 Aligned_cols=101 Identities=23% Similarity=0.242 Sum_probs=59.7
Q ss_pred eEEecCCCCccchHHhhcCCCCCCeeeecccCCcccc-cccccCCCCCcEEEecCceeeecCCC-CCCCCCccEEeeccc
Q 048062 418 SLRVGGCSKLESIAERLDNNTSLETIAVSFCRNLKIL-PSGLHNLRQLQEIGIWECDLVSFPQG-GLPCAKLMRLEISYC 495 (686)
Q Consensus 418 ~L~l~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~ 495 (686)
.++.++.+.+..+|. +..+++|+.|+|++++.+..+ +..+..+++|+.|++++|.+..++.. +..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-
Confidence 344455335566666 666777777777753333333 35566677777777777777666553 34566777777776
Q ss_pred cccccccccccCCCCCCeEEecCCC
Q 048062 496 KRLQVLPKGLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 496 ~~l~~l~~~l~~l~~L~~L~l~~c~ 520 (686)
+.+..+|..+.....|+.|++.+++
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 4555565533322237777776643
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.85 E-value=0.0032 Score=64.83 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=10.9
Q ss_pred ccCCCCCccEEEeccCCCceEcC
Q 048062 555 GFHRFSSLRQLTIINCDDVVSFP 577 (686)
Q Consensus 555 ~l~~l~~L~~L~i~~c~~l~~~~ 577 (686)
.+.++.+|+.+.+.+ +++.+.
T Consensus 305 aF~~c~~L~~i~lp~--~l~~I~ 325 (379)
T 4h09_A 305 VFMDCVKLSSVTLPT--ALKTIQ 325 (379)
T ss_dssp TTTTCTTCCEEECCT--TCCEEC
T ss_pred hhcCCCCCCEEEcCc--cccEEH
Confidence 455555666665543 344444
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.75 E-value=0.00065 Score=70.06 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=37.8
Q ss_pred hcCCCCCCeeeecccCCccccc-ccccCCCCCcEEEecCceeeecCC-CCCCCCCccEEeeccccccccccc-cccCCCC
Q 048062 434 LDNNTSLETIAVSFCRNLKILP-SGLHNLRQLQEIGIWECDLVSFPQ-GGLPCAKLMRLEISYCKRLQVLPK-GLHNLTS 510 (686)
Q Consensus 434 l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~ 510 (686)
+..+.+|+.+.+... +..++ ..+..+++|+.+.+.++.++.|+. .+..+.+|+.+.+.. .++.+.. .|.++++
T Consensus 259 F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred cceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence 445555555555431 22222 234455666666665555555544 223345566665542 2333332 3444555
Q ss_pred CCeEEe
Q 048062 511 LQQLRI 516 (686)
Q Consensus 511 L~~L~l 516 (686)
|+.+.+
T Consensus 335 L~~i~i 340 (379)
T 4h09_A 335 LSTISY 340 (379)
T ss_dssp CCCCCC
T ss_pred CCEEEE
Confidence 554444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.09 E-value=0.00064 Score=65.46 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=36.4
Q ss_pred CCccEEEccCCCCCc--cccccccCCCCccEEeccCCCCCccCCCCCCCC--CCcEEeccccccccccchh-----hhcc
Q 048062 249 CRLEYLALSGCEGLV--KLPQSSLSLSSLREIEIYKCSSLVSFPEVALPS--KLKKIQIRECDALKSLPQA-----WMCD 319 (686)
Q Consensus 249 ~~L~~L~l~~~~~l~--~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~--~L~~L~l~~~~~l~~l~~~-----~~~~ 319 (686)
++|+.|+|++|..-. .+|..+..+++|+.|+|++|. +..+..+..+. +|+.|++++++.-..++.. ....
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 555555555554211 223334455555555555553 44433333322 5666666654432222210 0112
Q ss_pred cCCCccEEeE
Q 048062 320 NNSSLEILKI 329 (686)
Q Consensus 320 ~l~~L~~L~l 329 (686)
.+++|+.|+=
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 4667776653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.03 E-value=0.00048 Score=62.84 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=31.9
Q ss_pred CCCceEEecCCCCcc-----chHHhhcCCCCCCeeeecccCCccc----ccccccCCCCCcEEEecCcee
Q 048062 414 PSLKSLRVGGCSKLE-----SIAERLDNNTSLETIAVSFCRNLKI----LPSGLHNLRQLQEIGIWECDL 474 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l 474 (686)
++|++|++++|..++ .+...+...++|++|++++|..... +...+...++|++|++++|.+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 567777777652332 2344455566666666666654321 122233345566666665543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.92 E-value=0.00063 Score=65.51 Aligned_cols=107 Identities=20% Similarity=0.052 Sum_probs=61.8
Q ss_pred ccchhhhhh--chhhhhhhhccc---chhhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCC
Q 048062 188 LPKLEELIL--STKEQTYIWKSH---DGLLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGL 262 (686)
Q Consensus 188 l~~l~~L~~--l~l~~n~~~~~~---~~~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l 262 (686)
|...+.|.. ++++.|...... ......+++|+.|+|++|. +..++.-. ..+..+ ++|+.|+|++|..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~--~~~~~l----~~L~~L~Ls~N~i- 208 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNR-LYRLDDMS--SIVQKA----PNLKILNLSGNEL- 208 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSC-CCCCGGGT--THHHHS----TTCCEEECTTSCC-
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCC-CCCCccch--hHHhhC----CCCCEEECCCCcc-
Confidence 444455554 455556433322 2223567888888888875 66654310 124455 8888888888753
Q ss_pred ccccccccCCC--CccEEeccCCCCCccCCC--------CCCCCCCcEEec
Q 048062 263 VKLPQSSLSLS--SLREIEIYKCSSLVSFPE--------VALPSKLKKIQI 303 (686)
Q Consensus 263 ~~~p~~~~~l~--~L~~L~l~~~~~l~~lp~--------~~~l~~L~~L~l 303 (686)
..+. .+..+. +|++|++++|+....+|. +..+++|+.|+=
T Consensus 209 ~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 209 KSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4442 233333 788888888874444442 345777777753
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.87 E-value=0.00067 Score=61.87 Aligned_cols=88 Identities=7% Similarity=0.086 Sum_probs=49.6
Q ss_pred hhhcCcCccEeecccccccccccchhhHHHHHHhhhcCCCccEEEccCCCCCc----cccccccCCCCccEEeccCCCCC
Q 048062 211 LLQDICSLKSLEIRSCPKLQSLVAEEEKDQQQQLCELSCRLEYLALSGCEGLV----KLPQSSLSLSSLREIEIYKCSSL 286 (686)
Q Consensus 211 ~~~~~~~L~~L~L~~~~~l~~lp~~~~~~~l~~l~~~~~~L~~L~l~~~~~l~----~~p~~~~~l~~L~~L~l~~~~~l 286 (686)
.+...+.|++|+|++|..+..-... .+...-...++|++|+|++|..-. .+...+...++|++|+|++|. +
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~----~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i 105 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLK----ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-I 105 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHH----HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHH----HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence 3466788888888887335542111 122211223778888888876421 133344455778888888775 4
Q ss_pred ccC-----C-CCCCCCCCcEEec
Q 048062 287 VSF-----P-EVALPSKLKKIQI 303 (686)
Q Consensus 287 ~~l-----p-~~~~l~~L~~L~l 303 (686)
+.- . .+...++|++|++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CHHHHHHHHHHHHhCCCceEEEe
Confidence 331 1 1344556777777
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.39 E-value=0.38 Score=40.38 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=28.3
Q ss_pred EEEecCceee--ecCCCCCCCCCccEEeeccccccccccc-cccCCCCCCeEEecCCC
Q 048062 466 EIGIWECDLV--SFPQGGLPCAKLMRLEISYCKRLQVLPK-GLHNLTSLQQLRIGKGV 520 (686)
Q Consensus 466 ~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~ 520 (686)
.++-++.+++ .+|...- ++|+.|+|++ +.++.+|. .|..+++|+.|+|.++|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 3444444555 5554322 2566666666 45555554 34556666666666654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.13 E-value=0.18 Score=45.66 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=34.9
Q ss_pred CCCceEEecCCCCcc-----chHHhhcCCCCCCeeeecccCCccc----ccccccCCCCCcEEEecCceee
Q 048062 414 PSLKSLRVGGCSKLE-----SIAERLDNNTSLETIAVSFCRNLKI----LPSGLHNLRQLQEIGIWECDLV 475 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~-----~l~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~ 475 (686)
+.|++|++++++.++ .+.+.+..-..|+.|+|++|..-.. +...+..-+.|++|++++|.+.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 467777777643332 2455556666777777777655432 1222333456777777766443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.88 E-value=0.76 Score=38.46 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=23.1
Q ss_pred Cccccceeeccccccccccccc-cCCCCCcCEEeecCCC
Q 048062 591 LPASLTTLWIFNFPNLERLSSS-IVDLQYLTSLYLLECP 628 (686)
Q Consensus 591 ~~~~L~~L~l~~~~~L~~l~~~-~~~l~~L~~L~i~~c~ 628 (686)
.|++|++|+|++ +.|+.|+.. +..+++|+.|++.++|
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 455677777777 666666643 3456666666666644
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.80 E-value=1.5 Score=39.60 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=33.7
Q ss_pred CCCceEEecCCCCcc----chHHhhcCCCCCCeeeecccCCccc----ccccccCCCCCcEEEecCc
Q 048062 414 PSLKSLRVGGCSKLE----SIAERLDNNTSLETIAVSFCRNLKI----LPSGLHNLRQLQEIGIWEC 472 (686)
Q Consensus 414 ~~L~~L~l~~~~~~~----~l~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~ 472 (686)
+.|+.|++++|..-. .+.+.+..-+.|++|+|++|..-.. +...+..-+.|++|+++++
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 567777777764332 3455555667788888877665432 2223333445666655543
No 166
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=31.88 E-value=1.4e+02 Score=21.48 Aligned_cols=46 Identities=9% Similarity=0.177 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 048062 8 ILTASVDLLVNKLASEGILFFARQEKIQDDLMEWENMLEMIKAVLD 53 (686)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~a~~~ 53 (686)
.++..+....+++..+...-=.+...+...+..+|..+...+|.++
T Consensus 24 ~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 24 DMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666665544333334455555666666666555544
No 167
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.51 E-value=1.7e+02 Score=21.23 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 048062 8 ILTASVDLLVNKLASEGILFFARQEKIQDDLMEWENMLEMIKAVL 52 (686)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~a~~ 52 (686)
+++.++....+++..+...-=.+...+...+..+|+.+...+|.+
T Consensus 24 ~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 24 IITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554433333334444555555555555443
No 168
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.96 E-value=1.1e+02 Score=17.36 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 048062 34 IQDDLMEWENMLEMIKAVLDDAEE 57 (686)
Q Consensus 34 ~~~~l~~l~~~~~~~~a~~~~~~~ 57 (686)
+.+++++|..+....+..++.+++
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555555544
Done!