BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048063
(484 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 111 PSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170
P + + T +N+ + IE+ G DRPGL SEI+ L+DL +I AH +
Sbjct: 834 PRAEIRNTLSNR----------FSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFG 883
Query: 171 DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA 209
+++ YV+D T ID P R+ATI + L A
Sbjct: 884 EKVIDTFYVTDL-TGQKIDSPARIATIRNRLMATLEGIA 921
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVD 425
+E+ +R GLLS+IT L + L + AH+ T GEK ++ FY+ D++G ++D
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKID 901
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 12 EFDTLPER---IYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKS 68
E T P+R ++ R I N +V++V+ + + GLL E+ L+D++L I+ +
Sbjct: 818 EKRTKPKRGAKVFKIPPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASA 877
Query: 69 YISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGE 109
+I++ +D F+V D G K+ I I+ + T E
Sbjct: 878 HITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLE 918
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 35/73 (47%)
Query: 292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGE 351
+S++ V+ DRP L+ + TL+D+ + A I G+ +++ + G +++
Sbjct: 846 FSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPAR 905
Query: 352 KERVIKCLEAAIE 364
+ L A +E
Sbjct: 906 IATIRNRLMATLE 918
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 122 KAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181
K + +++ HT IE++G DRPGL +++AA++ L+ NI AH + +R V YV+D
Sbjct: 838 KVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD 897
Query: 182 QSTDTPIDDPGRLATIEEYITTVL 205
I P R A I+ + +L
Sbjct: 898 L-LGARITAPTRQAAIKRALIHLL 920
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 46/79 (58%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V ++N+ + TV++V + + GLL ++ ++ +NL I+ +++++ DVF+V D
Sbjct: 838 KVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD 897
Query: 86 EHGNKLTDQKVINYIQQAI 104
G ++T I++A+
Sbjct: 898 LLGARITAPTRQAAIKRAL 916
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E+ +R GLL +T + + L + AHVAT GE++ + FY+ D+ G +
Sbjct: 852 IEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARI 903
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGR 193
T + + D P L S I+ A A NIV+A ++ D A + D D+ R
Sbjct: 739 TELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAISREYDRDEDEGRR 798
Query: 194 LATIEEYITTVLRA-------TAERSPSETHINPLQVK 224
A I E I V+ A R+ +T + P V+
Sbjct: 799 AARIGEIIEQVIDGRLRLPDVVARRAAGKTRLRPFVVE 836
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R++ RV IDN + TV++V+ + GLL ++ + LT++ L IS + IS+ +
Sbjct: 839 RVFHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAI 898
Query: 79 DVFHVKDEHGNKLTDQKVINYIQQAI 104
DVF+VKD G K+T + + I++ +
Sbjct: 899 DVFYVKDVFGLKVTHENKLAQIRERL 924
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E+ +R GLL D+TR L L + A ++T GEK+++ FY++D+ G +V
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFGLKV 911
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 75 GWFMDVFHVKD-------EHGNKLTDQKVINYIQQAIG---------TTGEIPSSAVAKT 118
G +DVF V+D E G+KL V+ I++ + T + P ++ +
Sbjct: 783 GMALDVFTVQDAAGGGAFESGDKLAKLSVM--IEKVLSGQLKPLHDLTKRKAPHASRTRV 840
Query: 119 Y--TNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACV 176
+ + + + + HT IE+ G DRPGL +++ AL +L I A ++ ++ V
Sbjct: 841 FHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDV 900
Query: 177 AYVSDQSTDTPIDDPGRLATIEEYITTVL 205
YV D + +LA I E + L
Sbjct: 901 FYVKD-VFGLKVTHENKLAQIRERLLHAL 928
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 282 VYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHI 341
V I++ ++++ V+ +DRP L++D LT++ + A I +G+ A ++++ +
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDV 906
Query: 342 DGYALNTEGE----KERVIKCL 359
G + E + +ER++ L
Sbjct: 907 FGLKVTHENKLAQIRERLLHAL 928
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 16 LPERIYGPTC--RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD 73
LPER T RV +DN++ + TV++++ + G L + + LTD+ + IS + +S+
Sbjct: 815 LPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTY 874
Query: 74 AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSE 132
+D F+VKD G K+ + + I++A+ +A+ +T K G+E +E
Sbjct: 875 GERVVDSFYVKDVFGMKIVHRAKLAQIREAL-------EAAITQTVPRKVEEGAEQGAE 926
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 58 LTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIG--TTGEIPSSAV 115
L +N+ +K SD G +D+F V+ G+ + ++ I + + + TG++P
Sbjct: 749 LAGVNILDAKITTMSDGG-ALDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKA 807
Query: 116 AK-------------TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIV 162
+ T + + ++ HT IE+ G DRPG ++ AL D+ I
Sbjct: 808 LRRQPPRLPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQIS 867
Query: 163 EAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSE 215
A ++ +R+ YV D I +LA I E + + T R E
Sbjct: 868 SARVSTYGERVVDSFYVKD-VFGMKIVHRAKLAQIREALEAAITQTVPRKVEE 919
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 51/233 (21%)
Query: 142 DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYI 201
D PGLFS+I+ A+A NI++A + +D A + I+ R+A + + +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794
Query: 202 TTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMS 261
VL GD RR P +
Sbjct: 795 RDVL------------------------TGDLPLEKALRR--------------QPPRLP 816
Query: 262 RSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVF 321
T V V +++ K ++++ ++ +DRP ++ LTD+ +
Sbjct: 817 ERTRHLTVP---------PRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQIS 867
Query: 322 HASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE----RRVCEG 370
A + +G+ ++++ + G + + ++ + LEAAI R+V EG
Sbjct: 868 SARVSTYGERVVDSFYVKDVFGMKIVHRAKLAQIREALEAAITQTVPRKVEEG 920
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 34/178 (19%)
Query: 281 AVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYF-IR 339
AV + E+ S V V D P L + + A I D + F ++
Sbjct: 715 AVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQ 774
Query: 340 HIDGYALNTEGEKERVIKC----------LEAAIER---RVCEGVR-------------- 372
++G+A+ E R+ K LE A+ R R+ E R
Sbjct: 775 TLEGHAIEKEERIARLAKTVRDVLTGDLPLEKALRRQPPRLPERTRHLTVPPRVIVDNQA 834
Query: 373 ------LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E+ +R G L +TR L + + + A V+T GE+ V++FY++D+ G ++
Sbjct: 835 SKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVKDVFGMKI 892
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 62 NLTISKSYISSDAGWFMDVFHVKDEH------GNKLTDQKVINYIQQAIGTTGEIPSSAV 115
N+ ++ Y ++D G +D + E+ G + T ++ I+ + +P
Sbjct: 765 NIVDAQIYTTTD-GRALDTISISREYDRDEDEGRRAT--RIGEMIEDVLEGKLRLPEVVA 821
Query: 116 AKTYTNKA---------VFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHA 166
+T +KA +++ +T IE++G DRPGL E++ A++ L+ NI AH
Sbjct: 822 RRTVRSKARPFVIEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHV 881
Query: 167 WSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPS 214
+ +R V YV+D I+ P R + I+ +T V+ P+
Sbjct: 882 ATFGERARDVFYVTDL-LGAQINAPTRQSAIKSALTHVMAGDKAVQPA 928
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I+N+ + TV++V + + GLL E+ ++ +NL I+ +++++ DVF+V D
Sbjct: 838 VTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL 897
Query: 87 HGNKLTDQKVINYIQQAI 104
G ++ + I+ A+
Sbjct: 898 LGAQINAPTRQSAIKSAL 915
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESM 432
+E+ +R GLL ++T + + L + AHVAT GE++ + FY+ D+ G +++ +S
Sbjct: 851 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQSA 910
Query: 433 KKEIL 437
K L
Sbjct: 911 IKSAL 915
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 110 IPSSAVAK-----TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEA 164
+PS A K K +++ HT IE++G DRPGL +++ A++ L+ NI A
Sbjct: 819 MPSRAAGKRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASA 878
Query: 165 HAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205
H + +R V YV+D I P R A I+ + +L
Sbjct: 879 HVATFGERARDVFYVTDL-LGARITAPTRQAAIKRALVHLL 918
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 14 DTLPERIYGPTCR-------VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTIS 66
D +P R G R V I+N+ + T+++V + + GLL ++ ++ +NL I+
Sbjct: 817 DVMPSRAAGKRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIA 876
Query: 67 KSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAI 104
+++++ DVF+V D G ++T I++A+
Sbjct: 877 SAHVATFGERARDVFYVTDLLGARITAPTRQAAIKRAL 914
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E+ +R GLL +T + + L + AHVAT GE++ + FY+ D+ G +
Sbjct: 850 IEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARI 901
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV-----DMD 427
+E+ +R GLLS++T VL + L + AH+ T GEK ++ FY+ D+ G+++ M+
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQMN 905
Query: 428 FVESMKKEILGPIDLAV-KNDSRSTSPSPPDRSP 460
+K + G +D A + S +P+P R P
Sbjct: 906 IAARLKAVLAGEVDEARERMPSGIIAPTPVSRVP 939
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + T V I N TV++V+ + + GLL E+ VL+D++L I+ ++I++ +
Sbjct: 825 RAFTVTPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVI 884
Query: 79 DVFHVKDEHGNKLTDQKVINYIQQAIGT--TGEI-------PSSAVAKTYTNKAVFGSEY 129
D F+V D G+K+T + I + GE+ PS +A T ++ GS+
Sbjct: 885 DTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVSRVPHGSKT 944
Query: 130 PSEHT 134
T
Sbjct: 945 TKAET 949
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 100 IQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHC 159
+ + I + + + A T T + + ++ T IE+ G DR GL SE++A L+DL
Sbjct: 810 LPEVIASRTRVKKRSRAFTVTPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSL 869
Query: 160 NIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA----ERSPS 214
+I AH + +++ YV+D + I R I + VL ER PS
Sbjct: 870 DIASAHITTFGEKVIDTFYVTDL-VGSKITSENRQMNIAARLKAVLAGEVDEARERMPS 927
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 62 NLTISKSYISSDAGWFMDVFHVKDEH------GNKLTDQKVINYIQQAIGTTGEIPSSAV 115
N+ ++ Y ++D G +D + E+ G + T ++ I+Q + +P +
Sbjct: 765 NIVDAQIYTTTD-GRALDTIAISREYERDEDEGRRAT--RIGETIEQVLEGKLRLPDAVA 821
Query: 116 AKTYTNK----------AVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAH 165
+T K +++ +T IE++G DRPGL E++ A++ L+ NI AH
Sbjct: 822 RRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAH 881
Query: 166 AWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205
+ +R V YV+D I+ P R A I+ + +L
Sbjct: 882 VATFGERARDVFYVTDL-LGAQINAPTRQAAIKSALLHLL 920
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I+N+ E TV++V + + GLL E+ ++ +NL I+ +++++ DVF+V D
Sbjct: 839 VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL 898
Query: 87 HGNKL 91
G ++
Sbjct: 899 LGAQI 903
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVD 425
+E+ +R GLL ++T + + L + AHVAT GE++ + FY+ D+ G +++
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 62 NLTISKSYISSDAGWFMDVFHVKDEH------GNKLTDQKVINYIQQAIGTTGEIPSSAV 115
N+ ++ Y ++D G +D + E+ G + T ++ I+Q + +P +
Sbjct: 765 NIVDAQIYTTTD-GRALDTIAISREYERDEDEGRRAT--RIGETIEQVLEGKLRLPDAVA 821
Query: 116 AKTYTNK----------AVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAH 165
+T K +++ +T IE++G DRPGL E++ A++ L+ NI AH
Sbjct: 822 RRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAH 881
Query: 166 AWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205
+ +R V YV+D I+ P R A I+ + +L
Sbjct: 882 VATFGERARDVFYVTDL-LGAQINAPTRQAAIKSALLHLL 920
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I+N+ E TV++V + + GLL E+ ++ +NL I+ +++++ DVF+V D
Sbjct: 839 VSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL 898
Query: 87 HGNKL 91
G ++
Sbjct: 899 LGAQI 903
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVD 425
+E+ +R GLL ++T + + L + AHVAT GE++ + FY+ D+ G +++
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQIN 904
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 21 YGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDV 80
+ T V +DNE+ E TVV+ + GLL + + ++D L+I ++I +D
Sbjct: 827 FAITPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDA 886
Query: 81 FHVKDEHGNKLTDQKVIN 98
F+V D G KLTD + N
Sbjct: 887 FYVVDADGRKLTDARKRN 904
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 15/147 (10%)
Query: 50 LLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEHGNKLT--DQKVINYIQQAIGT 106
L +++ + +T + + + +S AG +DVF+V+D G D + + + + +
Sbjct: 745 LFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDASGQPFGSHDPRALARLAETLAC 804
Query: 107 TGEIPSSA------------VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAAL 154
A A T + +E T +E +G DRPGL + ++ +
Sbjct: 805 AARGEPVAREPRKPQDLGRTAAFAITPAVMLDNEASETSTVVEASGRDRPGLLAALARTI 864
Query: 155 ADLHCNIVEAHAWSHNDRLACVAYVSD 181
+D +I+ AH + +R YV D
Sbjct: 865 SDAGLSILSAHIDGYGERAVDAFYVVD 891
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E +R GLL+ + R + + GL+++ AH+ GE++V+AFY+ D G ++
Sbjct: 846 VEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVVDADGRKL 897
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + T V I N TV++V+ + + GLL E+ VL+D++L I+ ++I++ +
Sbjct: 825 RAFTVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVI 884
Query: 79 DVFHVKDEHGNKLTDQKVINYIQQAIGT--TGEI-------PSSAVAKTYTNKAVFGSEY 129
D F+V D G+K+T + I + GE+ PS +A T +A GS+
Sbjct: 885 DTFYVTDLVGSKITSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASHGSKA 944
Query: 130 PSEHT 134
T
Sbjct: 945 TKAET 949
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV-----DMD 427
+E+ +R GLLS++T VL + L + AH+ T GEK ++ FY+ D+ G+++ M+
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQMN 905
Query: 428 FVESMKKEILGPIDLAV-KNDSRSTSPSPPDRS 459
+K + G +D A + S +P+P R+
Sbjct: 906 IAARLKAVLAGEVDEARERMPSGIIAPTPVPRA 938
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 116 AKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLAC 175
A T T + + ++ T IE+ G DR GL SE++A L+DL +I AH + +++
Sbjct: 826 AFTVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVID 885
Query: 176 VAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA----ERSPS 214
YV+D + I R I + VL ER PS
Sbjct: 886 TFYVTDL-VGSKITSENRQMNIAARLKAVLAGEVDEARERMPS 927
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALN-- 347
G + V + CKDRP L V + + + + A I D YAF + + +DG L
Sbjct: 697 GGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTELDGSLLKFD 756
Query: 348 --------------------TEGEKERVIKCLEAAIERRVCEGVR-----LELCAANRVG 382
+G + ++ E R + +EL ++ G
Sbjct: 757 RRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEMELFTLDKAG 816
Query: 383 LLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPID 441
LL+D++ V E L++ A + T GEK+ + F L + G + +S+ +++ +D
Sbjct: 817 LLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALSERERQSLSEKLQARLD 875
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 129 YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPI 188
+ +T IE++G DRPGL +++ A++ L+ NI AH + +R V YV+D I
Sbjct: 843 WSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGAQI 901
Query: 189 DDPGRLATIEEYITTVL 205
P R A I+ + +L
Sbjct: 902 TAPTRQAAIKRALVHLL 918
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I+N + TV++V + + GLL ++ ++ +NL I+ +++++ DVF+V D
Sbjct: 837 VEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDL 896
Query: 87 HGNKLTDQKVINYIQQAI------GTTGEIPSS 113
G ++T I++A+ G E P++
Sbjct: 897 LGAQITAPTRQAAIKRALVHLLANGDAAEKPAA 929
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E+ +R GLL +T + + L + AHVAT GE++ + FY+ D+ G ++
Sbjct: 850 IEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQI 901
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
RV IDN + + TV++V+ + GLL ++ L+ +L IS ++I++ +DVF+V+D
Sbjct: 857 RVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRD 916
Query: 86 EHGNKLTDQKVINYIQQAI 104
G K+TD + +++ +
Sbjct: 917 LLGMKITDPVRLARLRETL 935
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 122 KAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181
+ V + HT IE+ G DRPGL ++++AL+ I AH ++ R V YV D
Sbjct: 857 RVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRD 916
Query: 182 QSTDTPIDDPGRLATIEEYITTVLRATAERSPS 214
I DP RLA + E + L + +P+
Sbjct: 917 L-LGMKITDPVRLARLRETLLASLTSAPVTTPA 948
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 48/208 (23%)
Query: 265 PSSAVGFGDEEGMR-----------RTAVYIES--CEEKGYSIVSVDCKDRPRLMFDTVC 311
PS +GF + MR R+ V +E+ E+G + ++V C D P L
Sbjct: 715 PSYWLGFDTDTQMRHARMVHDSDRYRSPVTVEAYPIPERGVTELTVLCADHPGLFSQIAG 774
Query: 312 TLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERR--VC 368
L + A I D A ++++ +G + + R+ +E A+ R +
Sbjct: 775 ALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLDIR 834
Query: 369 EGVR--------------------------------LELCAANRVGLLSDITRVLRENGL 396
+G+ +E+ +R GLL D+T L L
Sbjct: 835 KGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASL 894
Query: 397 AVVRAHVATKGEKSVNAFYLRDISGNEV 424
+ AH+ T G ++V+ FY+RD+ G ++
Sbjct: 895 QISSAHITTYGMRAVDVFYVRDLLGMKI 922
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 46/222 (20%)
Query: 142 DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYI 201
D PGLFS+I+ ALA +IV+A + +D +A + ++P +L + +
Sbjct: 764 DHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLV 823
Query: 202 TTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMS 261
L L ++ D + RR+ + + R
Sbjct: 824 EQALSGR------------LDIRKG---IEDASHHSTSRRMRAIHVPPR----------- 857
Query: 262 RSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVF 321
V I++ ++++ V+ +DRP L+ D L+ +
Sbjct: 858 --------------------VVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQIS 897
Query: 322 HASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI 363
A I +G A +++R + G + R+ + L A++
Sbjct: 898 SAHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 88/231 (38%), Gaps = 57/231 (24%)
Query: 142 DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYI 201
D PG+FS ++ ALA + N+V+A +++ D YV+D I D
Sbjct: 726 DHPGIFSRMAGALALVGANVVDARSYTTKD-----GYVTDAFW---IQD----------- 766
Query: 202 TTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMS 261
AE P E P RL Q++L G ++
Sbjct: 767 -------AEGHPYEAARLP--------------------RLSQMILKTLK-----GEVVA 794
Query: 262 RSTPSSAVGFGDEEGMRRTAVYIESCEEKG--YSIVSVDCKDRPRLMFDTVCTLTDMQYV 319
R S E +I E Y+I+ VD +DRP L++D L
Sbjct: 795 RDALKSRDKIKKREKAFNVPTHITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVY 854
Query: 320 VFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEG 370
+ +A I +G+ ++++ + G ++E ++ + LE + + + EG
Sbjct: 855 IANAVIATYGEQVVDSFYVKDMFGLKYHSEAKQ----RTLETKLRKAITEG 901
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 18 ERIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWF 77
E+ + + DNE + T+++VD+ + GLL ++ + L N+ I+ + I++
Sbjct: 808 EKAFNVPTHITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQV 867
Query: 78 MDVFHVKDEHGNK 90
+D F+VKD G K
Sbjct: 868 VDSFYVKDMFGLK 880
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 58 LTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT-TGEIPSSAVA 116
L N+ ++SY + D G+ D F ++D G+ ++ Q + T GE+ +
Sbjct: 740 LVGANVVDARSYTTKD-GYVTDAFWIQDAEGHPYEAARLPRLSQMILKTLKGEVVARDAL 798
Query: 117 KTYTN-----KA-------VFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEA 164
K+ KA F +E +T IE+ DRPGL +++ ALA + I A
Sbjct: 799 KSRDKIKKREKAFNVPTHITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANA 858
Query: 165 HAWSHNDRLACVAYVSD 181
++ +++ YV D
Sbjct: 859 VIATYGEQVVDSFYVKD 875
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISG 421
+E+ +R GLL D+ R L + + A +AT GE+ V++FY++D+ G
Sbjct: 830 IEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFG 878
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V IDN++ D TVV+ + GLL + + L D L+I ++I +D F+V+
Sbjct: 836 VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTT 895
Query: 87 HGNKLTDQK 95
G K+TD +
Sbjct: 896 EGGKVTDTR 904
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEHGNKL--TDQKV 96
V + + ++GL ++ ++ + + + + +S G +DVF+V+D G + +
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 97 INYIQQAIGTTGEIPSSAV----AKTYTNKAVFG--------SEYPSEHTAIEMTGTDRP 144
+ + A+ G+ + AV T A F ++ ++ T +E +G DRP
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 145 GLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTD 185
GL ++ LAD +I AH + +R YV Q+T+
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV--QTTE 896
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E +R GLL + + L ++ L++ AH+ GE++V+AFY++ G +V
Sbjct: 849 VEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV 900
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V IDN++ D TVV+ + GLL + + L D L+I ++I +D F+V+
Sbjct: 836 VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTT 895
Query: 87 HGNKLTDQK 95
G K+TD +
Sbjct: 896 EGGKVTDTR 904
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEHGNKL--TDQKV 96
V + + ++GL ++ ++ + + + + +S G +DVF+V+D G + +
Sbjct: 738 VVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRA 797
Query: 97 INYIQQAIGTTGEIPSSAV----AKTYTNKAVFG--------SEYPSEHTAIEMTGTDRP 144
+ + A+ G+ + AV T A F ++ ++ T +E +G DRP
Sbjct: 798 LRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRP 857
Query: 145 GLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTD 185
GL ++ LAD +I AH + +R YV Q+T+
Sbjct: 858 GLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV--QTTE 896
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E +R GLL + + L ++ L++ AH+ GE++V+AFY++ G +V
Sbjct: 849 VEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV 900
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 33/175 (18%)
Query: 291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDG------ 343
G + V + C+D+P L V T+ ++ + A I D Y F + I ++G
Sbjct: 685 GGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFD 744
Query: 344 --------YALNTEGEK--------ERVIKCLEAAIERRVC-----EGVRLELCAANRVG 382
L + EK R ++ + R E ++EL A ++ G
Sbjct: 745 RRRELEQALTLALQSEKLPALSIVPNRQLQHFTVQTDVRFLQENKKEHTQMELVALDKAG 804
Query: 383 LLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEIL 437
LL+ ++++ E L ++ A + T GEK+ + F L + G +D S ++EIL
Sbjct: 805 LLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQALD-----SQQREIL 854
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 75 GWFMDVFHVKDEHGNKLTDQKVINYIQQAIG----TTGEI----------PSSAVAKTYT 120
GW +D + V+D G +++ + I+QAI GE+ + A A
Sbjct: 765 GWAIDNYLVQDPVGQPFAEERQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVR 824
Query: 121 NKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
+ +F ++ T IE+ DR L + + AL + + AH ++ +R A YV+
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 181 DQSTDTPIDDPGRLATIEEYI 201
D T I D R+ TI + +
Sbjct: 885 D-LTGAKITDESRMDTIRQAL 904
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
RV DN++ TV++V++ + LL + + L + + + ++I++ D F+V D
Sbjct: 826 RVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTD 885
Query: 86 EHGNKLTDQKVINYIQQAI 104
G K+TD+ ++ I+QA+
Sbjct: 886 LTGAKITDESRMDTIRQAL 904
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 34/191 (17%)
Query: 281 AVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIR 339
+++ E EE+G ++V+V D P L + + + A I +A Y ++
Sbjct: 715 SIHCEFDEERGATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQ 774
Query: 340 HIDGYALNTEGEKERVIKCLEAAIE----------RRVCEGVR----------------- 372
G E + R+ + + AI +R + R
Sbjct: 775 DPVGQPFAEERQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDAS 834
Query: 373 -----LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV-DM 426
+E+ A +R LL+ + R L EN + V AH+ GE++ + FY+ D++G ++ D
Sbjct: 835 GRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDE 894
Query: 427 DFVESMKKEIL 437
++++++ +L
Sbjct: 895 SRMDTIRQALL 905
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 97/288 (33%), Gaps = 53/288 (18%)
Query: 85 DEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNKAVFGSEYPSEH--TAIEMTGTD 142
++HG L D I + I I VA+ + E+ E T + + D
Sbjct: 678 EKHGRLLPDSYWIAEPENVISRN--IVQYDVAREISEDLSIHCEFDEERGATLVTVIAAD 735
Query: 143 RPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202
PGLF I+ + NI++A + + A Y+ P + +LA IE+ I
Sbjct: 736 HPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQLARIEQAIA 795
Query: 203 TVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSR 262
+ E P Q +A F
Sbjct: 796 DAIANRGELVPKLAKRPLKQTRAGAFDV-------------------------------- 823
Query: 263 STPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFH 322
R V ++ ++++ V+ +DR L+ L + Q +V
Sbjct: 824 ----------------RPRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQS 867
Query: 323 ASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKC-LEAAIERRVCE 369
A I +G+ A +++ + G + E + + + L+AA + R E
Sbjct: 868 AHITAYGERAADTFYVTDLTGAKITDESRMDTIRQALLDAASDARQAE 915
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 33/175 (18%)
Query: 291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDG------ 343
G + V + C+D+P L V T+ ++ + A I D Y F + I ++G
Sbjct: 685 GGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFD 744
Query: 344 --------YALNTEGEK--------ERVIKCLEAAIERRVC-----EGVRLELCAANRVG 382
L + EK R ++ + R E +EL A ++ G
Sbjct: 745 RRRELEQALTLALQSEKLSALSITPNRQLQHFTVQTDVRFLHENKKEHTEMELVALDKAG 804
Query: 383 LLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEIL 437
LL+ ++++ E L ++ A + T GEK+ + F L + G +D S ++EIL
Sbjct: 805 LLAQVSQIFSELNLNLLNAKITTVGEKAEDFFILTNQFGQALD-----SQQREIL 854
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 49/223 (21%)
Query: 141 TDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEY 200
D PG+FS ++ ALA + N+V+A ++ D A + S +P + RL +
Sbjct: 748 ADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSEGSPY-EISRLPRLTSM 806
Query: 201 ITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNM 260
I L+ G+ + +++D D
Sbjct: 807 IDKTLK------------------------GEVVARE----------ALKDRDKLKKREA 832
Query: 261 SRSTPSSAVGFGDEEGMRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVV 320
P+ + F D EG + +Y +I+ VD +DRP L++D TL +
Sbjct: 833 QFRFPTH-IAF-DNEG---SDIY---------TIIEVDTRDRPGLLYDLTRTLAANNIYI 878
Query: 321 FHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI 363
A I +G ++++ + G L+ + +E + K L AI
Sbjct: 879 ASAVIATYGAQVVDSFYVKDMFGLKLHQKNRQETLEKKLRQAI 921
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
+ DNE + T+++VD+ + GLL ++ + L N+ I+ + I++ +D F+VKD
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDM 899
Query: 87 HGNKL 91
G KL
Sbjct: 900 FGLKL 904
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISG 421
+E+ +R GLL D+TR L N + + A +AT G + V++FY++D+ G
Sbjct: 853 IEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFG 901
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 58 LTDMNLTISKSYISSDAGWFMDVFHVKDEHGN-----------KLTDQKVINYI--QQAI 104
L N+ +++Y + D G+ VF ++D G+ + D+ + + ++A+
Sbjct: 763 LVGANVVDARTYTTKD-GYATAVFWIQDSEGSPYEISRLPRLTSMIDKTLKGEVVAREAL 821
Query: 105 GTTGEIPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEA 164
++ + F +E +T IE+ DRPGL +++ LA + I A
Sbjct: 822 KDRDKLKKREAQFRFPTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASA 881
Query: 165 HAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERS 212
++ ++ YV D + R T+E+ + + AER+
Sbjct: 882 VIATYGAQVVDSFYVKDM-FGLKLHQKNRQETLEKKLRQAIVEGAERA 928
>sp|Q2GAJ4|GLND_NOVAD [Protein-PII] uridylyltransferase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=glnD PE=3 SV=1
Length = 912
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDF-VES 431
+E+ A +R LL+ + R L E L V AH+AT GE++V+ FY+ D+ G +VD + +++
Sbjct: 835 IEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTDVLGEKVDSEARMKA 894
Query: 432 MKKEIL 437
++K +L
Sbjct: 895 VEKRLL 900
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 75 GWFMDVFHVKDEHGNKLTDQKVINYIQQAIG-----TTGEIPSSAVAKTYTNKA------ 123
G +D F V+D G L + I ++ AI +P A +A
Sbjct: 760 GTAVDNFLVQDPLGRPLNEASQIERLKNAIADALANRVKLVPQLAARPLARPRADAFDVR 819
Query: 124 ---VFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180
+F ++ + T IE+ DRP L + ++ AL + + AH ++ +R YV+
Sbjct: 820 PIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVT 879
Query: 181 DQSTDTPIDDPGRLATIEEYI 201
D + +D R+ +E+ +
Sbjct: 880 DVLGEK-VDSEARMKAVEKRL 899
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V DN++ TV++V + + LL + + L + L + ++I++ +D F+V D
Sbjct: 822 VIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTDV 881
Query: 87 HGNKLTDQKVINYIQQAIGTTGE 109
G K+ + + +++ + E
Sbjct: 882 LGEKVDSEARMKAVEKRLLEAAE 904
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPSP 455
+K+++L L +N +R+ SP
Sbjct: 909 IKRKLLAL--LGAENGARTNGRSP 930
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T KA + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDMLAKRTKPKKAARAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203
PGL SE++ ++DL +I AH + +++ YV+D I + R I+ +
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISNATRQGNIKRKLLA 915
Query: 204 VLRA-----TAERSPS 214
+L A T RSP
Sbjct: 916 LLGAENGARTNGRSPQ 931
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 19 RIYGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFM 78
R + RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +
Sbjct: 828 RAFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVI 887
Query: 79 DVFHVKDEHGNKLTD 93
D F+V D G+K+++
Sbjct: 888 DSFYVTDLVGHKISN 902
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 21/178 (11%)
Query: 55 VQVLTDMNLTISKSYISSDAGWF-MDVFHVKDEHGNKLTD-----QKVINYIQQAIGTTG 108
V + +NL I + I + + F +D + V D G + D +++ + + +A+ T
Sbjct: 722 VAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPE 781
Query: 109 EIPSSAVAKTYTNKAVFGSEYPSEHTAI----------EMTGTDRPGLFSEISAALADLH 158
+ P A+ + + + ++P + T + E+T DRPGL + I +
Sbjct: 782 DYP--AIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFD 839
Query: 159 CNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA--TAERSPS 214
++ A + +R+ V +++D + + P+ DP + ++E I L+A +E SPS
Sbjct: 840 ISLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQEAIIQQLQAGQASEASPS 896
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 44/79 (55%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N++ T++++ + + GLL + ++ + ++++ + I++ DVF + D
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITD 862
Query: 86 EHGNKLTDQKVINYIQQAI 104
L+D ++ + +Q+AI
Sbjct: 863 ADNQPLSDPQLCSRLQEAI 881
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ I R+ E +++ A +AT GE+ + F++ D
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITD 862
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V IDN++ + TV++V++ + LL ++ L + LTIS ++I++ +DVF+V D
Sbjct: 837 VFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDL 896
Query: 87 HGNKLTDQKVINYIQQAI 104
+K+T+Q + I++ +
Sbjct: 897 FSHKITNQNRLKAIEKRL 914
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 36 DCTVVKVDSVSKQGLLLEMVQVL--TDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTD 93
D T++ + ++ G + + T N+ ++ + + D G MD V++ G +
Sbjct: 734 DATMISLYAIDHPGFFYRISGAIHATGGNILDARIHTTRD-GMAMDNLLVQNSQGGMIKS 792
Query: 94 QKVINYIQQAI--GTTGEIPSSAVAKT------YTNKA------VFGSEYPSEH-TAIEM 138
+ +N + QAI T I SS + KA VF S+ T IE+
Sbjct: 793 GEHLNRMMQAIEDAATSHIRSSNKLAALRPPLFWRGKAFHVEPLVFIDNQASDRFTVIEV 852
Query: 139 TGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIE 198
DRP L ++ AL + I AH ++ +R V YVSD + I + RL IE
Sbjct: 853 NAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHK-ITNQNRLKAIE 911
Query: 199 E 199
+
Sbjct: 912 K 912
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV-DMDFVES 431
+E+ A +R LL D+ L L + AH+AT GE++V+ FY+ D+ +++ + + +++
Sbjct: 850 IEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDLFSHKITNQNRLKA 909
Query: 432 MKKEIL 437
++K +L
Sbjct: 910 IEKRLL 915
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 40/78 (51%)
Query: 282 VYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHI 341
V+I++ ++++ V+ +DRP L+ D C L + + + A I +G+ A +++ +
Sbjct: 837 VFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVSDL 896
Query: 342 DGYALNTEGEKERVIKCL 359
+ + + + + K L
Sbjct: 897 FSHKITNQNRLKAIEKRL 914
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I N TV++V+ + + GLL E+ VL+D++L I + I++ +D F+V D
Sbjct: 828 VIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADL 887
Query: 87 HGNKLTDQKVINYI 100
G K++++ YI
Sbjct: 888 VGQKISNENRRAYI 901
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 69 YISSDAGWFMDVFHVK-------DEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTN 121
+ +SD G +D HV DE T K+I + E+ ++ N
Sbjct: 761 FTTSD-GRALDTIHVSREFPDDADELRRAATIGKMIEDVLAGRKRLPEVIATRTKNRRKN 819
Query: 122 KA-------VFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLA 174
KA + + ++ T IE+ DRPGL SEI+A L+DL +I A + +++
Sbjct: 820 KAFVIPPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVI 879
Query: 175 CVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA--------ERSPS 214
YV+D I + R A YIT L+A ER PS
Sbjct: 880 DTFYVADL-VGQKISNENRRA----YITARLKAVMAGEEDEMRERMPS 922
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E+ +R GLLS+IT VL + L + A + T GEK ++ FY+ D+ G ++
Sbjct: 841 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKI 892
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 40/83 (48%)
Query: 281 AVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRH 340
+V I + ++++ V+C DRP L+ + L+D+ + A I G+ +++
Sbjct: 827 SVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVAD 886
Query: 341 IDGYALNTEGEKERVIKCLEAAI 363
+ G ++ E + + L+A +
Sbjct: 887 LVGQKISNENRRAYITARLKAVM 909
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 44/68 (64%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
RV I+N TV++V+ + + GLL E+ +++D++L I+ ++I++ +D F+V D
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Query: 86 EHGNKLTD 93
G+K+++
Sbjct: 895 LVGHKISN 902
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 94 QKVINYIQQAIGTTGEIPSSAVAKTYTNKAV----------FGSEYPSEHTAIEMTGTDR 143
++V I+ + +P +T +A + ++ T IE+ G DR
Sbjct: 797 ERVGKVIEDVLSGKAHLPDVLAKRTKPKRAAKAFKVEPRVEINNTLSNKFTVIEVEGLDR 856
Query: 144 PGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181
PGL SE++ ++DL +I AH + +++ YV+D
Sbjct: 857 PGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD 894
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVE-S 431
+E+ +R GLLS++T ++ + L + AH+ T GEK +++FY+ D+ G+++ + +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 432 MKKEILGPIDLAVKNDSRSTSPS 454
+++++LG L+ +N S++ S
Sbjct: 909 IRRKLLGV--LSGENGSKTNGRS 929
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N+++ T++++ + + GLL + ++ D +L++ + I++ DVF V D
Sbjct: 803 QVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
Query: 86 EHGNKLTDQKVINYIQQAIG 105
H L+D ++ +Q AI
Sbjct: 863 AHNQPLSDPELCARLQLAIA 882
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 15/175 (8%)
Query: 31 NESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKS-YISSDAGWFMDVFHVKDEHGN 89
E T + + + + V + +NL+I + I+S + + +D + V D G
Sbjct: 698 QREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGG 757
Query: 90 KLTD-----QKVINYIQQAIGTTGEIPSSAVAKT--------YTNKAVFGSEYPSEHTAI 136
+ + Q++ + +A+ + P+ + + + ++ T +
Sbjct: 758 SIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTIL 817
Query: 137 EMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDP 191
E+ DRPGL + I D ++ A + +R+ V +V+D + + P+ DP
Sbjct: 818 EIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD-AHNQPLSDP 871
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ I ++ + L++ A +AT GE+ + F++ D
Sbjct: 817 LEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N+++ T++++ + + GLL + ++ D +L++ + I++ DVF V D
Sbjct: 803 QVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
Query: 86 EHGNKLTDQKVINYIQQAIG 105
H L+D ++ +Q AI
Sbjct: 863 AHNQPLSDPELCARLQLAIA 882
Score = 35.4 bits (80), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 15/175 (8%)
Query: 31 NESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKS-YISSDAGWFMDVFHVKDEHGN 89
E T + + + + V + +NL+I + I+S + + +D + V D G
Sbjct: 698 QREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGG 757
Query: 90 KLTD-----QKVINYIQQAIGTTGEIPSSAVAKT--------YTNKAVFGSEYPSEHTAI 136
+ + Q++ + +A+ + P+ + + + ++ T +
Sbjct: 758 SIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTIL 817
Query: 137 EMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDP 191
E+ DRPGL + I D ++ A + +R+ V +V+D + + P+ DP
Sbjct: 818 EIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD-AHNQPLSDP 871
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ I ++ + L++ A +AT GE+ + F++ D
Sbjct: 817 LEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTD 862
>sp|P43919|GLND_HAEIN [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnD PE=3 SV=1
Length = 863
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 28/178 (15%)
Query: 291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTE 349
G + V + C+D+P L V T+ ++ + A I D Y F + I ++G + +
Sbjct: 685 GGTEVFIYCQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFD 744
Query: 350 GEKE----------------------RVIKCLEAAIERRVC-----EGVRLELCAANRVG 382
+E R ++ + R E +EL A ++ G
Sbjct: 745 RRRELEQALTVALQSEKLPALSIVPNRQLQHFTVQTDVRFLQENKKEHTEMELVALDKAG 804
Query: 383 LLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPI 440
LL+ ++++ E L ++ A + T GEK+ + F L + G + + E + I+ I
Sbjct: 805 LLAQVSQIFTELNLNLLNAKITTVGEKAEDFFILTNQFGQALAREERERLNSVIIQQI 862
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKD 85
V I ++ T V V + + L +V L N + + I +S G +D F V D
Sbjct: 681 VLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTSKDGHVIDTFMVLD 740
Query: 86 EHGNKLTDQK---VINYIQQAIGT-------TGEIPSSAVAKTYTNKAVFGSEYPSEHTA 135
+HG + + + VI ++ + T P+ K F +HT
Sbjct: 741 QHGEAIDESRHAAVIKHLTHVLEAGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKGKKHTL 800
Query: 136 IEMTGTDRPGLFSEISAALADLHCNI 161
+E D PGL +++ ADL+ N+
Sbjct: 801 MEFVALDTPGLLAKVGRTFADLNINL 826
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I N TV++V+ + + GLL E+ VL+D++L I + I++ +D F+V D
Sbjct: 827 VNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDL 886
Query: 87 HGNKLT-DQKVINYIQQAIGTTGE--------IPSSAVAKTYTNKAVFGSE 128
G K++ D K N + E +PS +A T + SE
Sbjct: 887 VGQKISGDSKRANITARMKAVMAEEEDELRERMPSGIIAPAATARTPPASE 937
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMD 427
+E+ +R GLLS+IT VL + L + A + T GEK ++ FY+ D+ G ++ D
Sbjct: 840 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISGD 894
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 111 PSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170
PS + + +NK T IE+ DRPGL SEI+A L+DL +I A +
Sbjct: 825 PSVNITNSLSNK----------FTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFG 874
Query: 171 DRLACVAYVSD 181
+++ YV+D
Sbjct: 875 EKVIDTFYVTD 885
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/83 (18%), Positives = 41/83 (49%)
Query: 281 AVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRH 340
+V I + ++++ V+C DRP L+ + L+D+ + A I G+ +++
Sbjct: 826 SVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTD 885
Query: 341 IDGYALNTEGEKERVIKCLEAAI 363
+ G ++ + ++ + ++A +
Sbjct: 886 LVGQKISGDSKRANITARMKAVM 908
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I N TV++++ + + GLL E+ VL D++L I + I++ +D F+V D
Sbjct: 828 VTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDL 887
Query: 87 HGNKLTDQ 94
G K+T++
Sbjct: 888 VGQKITNE 895
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEV 424
+E+ +R+GLL+++T VL + L + A + T GEK ++ FY+ D+ G ++
Sbjct: 841 IEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVIDLVGQKI 892
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I N TV++V+ + + GLL +M V+ D++L I + I++ +D F+V D
Sbjct: 829 VTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDL 888
Query: 87 HGNKLTD 93
G K+T+
Sbjct: 889 FGQKVTN 895
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMD 427
+E+ +R GLL+D+T V+ + L + A + T GEK ++ FY+ D+ G +V D
Sbjct: 842 IEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTDLFGQKVTND 896
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 111 PSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170
PS ++ +NK T IE+ DRPGL ++++A +ADL +I A +
Sbjct: 827 PSVTISNGLSNK----------FTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFG 876
Query: 171 DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205
+++ YV+D +D R A+I + + V+
Sbjct: 877 EKVIDTFYVTDLFGQKVTND-NRQASIAQRLKAVM 910
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 39/83 (46%)
Query: 281 AVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRH 340
+V I + ++++ V+C DRP L+ D + D+ + A I G+ +++
Sbjct: 828 SVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVTD 887
Query: 341 IDGYALNTEGEKERVIKCLEAAI 363
+ G + + + + + L+A +
Sbjct: 888 LFGQKVTNDNRQASIAQRLKAVM 910
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Query: 55 VQVLTDMNLTISKSYISSDAGWF-MDVFHVKDEHGNKLTD-----QKVINYIQQAIGTTG 108
V ++ +NL I + I + + F +D + V D G + D +++ + + +A+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 109 EIPSSAVAKTYTNKAVFGSEYPSEHTAI----------EMTGTDRPGLFSEISAALADLH 158
+ P+ + + + + ++P + T + E+T DRPGL + + +
Sbjct: 782 DYPT--IIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFD 839
Query: 159 CNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHI 218
++ A + +R+ V +++D + + P+ DP + ++E I L+A S+T +
Sbjct: 840 LSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSQTRV 898
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N++ T++++ + + GLL + ++ + +L++ + I++ DVF + D
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Query: 86 EHGNKLTDQKVINYIQQAI 104
L+D ++ + +Q+AI
Sbjct: 863 ADNQPLSDPQLCSRLQEAI 881
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ + R+ E L++ A +AT GE+ + F++ D
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Query: 55 VQVLTDMNLTISKSYISSDAGWF-MDVFHVKDEHGNKLTD-----QKVINYIQQAIGTTG 108
V ++ +NL I + I + + F +D + V D G + D +++ + + +A+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 109 EIPSSAVAKTYTNKAVFGSEYPSEHTAI----------EMTGTDRPGLFSEISAALADLH 158
+ P+ + + + + ++P + T + E+T DRPGL + + +
Sbjct: 782 DYPT--IIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFD 839
Query: 159 CNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHI 218
++ A + +R+ V +++D + + P+ DP + ++E I L+A S+T +
Sbjct: 840 LSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSQTRV 898
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N++ T++++ + + GLL + ++ + +L++ + I++ DVF + D
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Query: 86 EHGNKLTDQKVINYIQQAI 104
L+D ++ + +Q+AI
Sbjct: 863 ADNQPLSDPQLCSRLQEAI 881
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ + R+ E L++ A +AT GE+ + F++ D
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
Query: 55 VQVLTDMNLTISKSYISSDAGWF-MDVFHVKDEHGNKLTD-----QKVINYIQQAIGTTG 108
V ++ +NL I + I + + F +D + V D G + D +++ + + +A+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 109 EIPSSAVAKTYTNKAVFGSEYPSEHTAI----------EMTGTDRPGLFSEISAALADLH 158
+ P+ + + + + +P + T + E+T DRPGL + I +
Sbjct: 782 DYPT--IIQRRVPRQLKHFNFPPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFD 839
Query: 159 CNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHI 218
++ A + +R+ V +++D + + P+ DP + ++E I L+A S T +
Sbjct: 840 LSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQEAIVQQLQAGQASDASPTRV 898
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ I R+ E L++ A +AT GE+ + F++ D
Sbjct: 817 LEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N++ T++++ + + GLL + ++ + +L++ + I++ DVF + D
Sbjct: 803 QVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Query: 86 EHGNKLTDQKVINYIQQAI 104
L+D ++ + +Q+AI
Sbjct: 863 ADNQPLSDPQLCSRLQEAI 881
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86
V I N++ TV+++ + + GLL + ++ + +L++ + I++ DVF + D
Sbjct: 804 VTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDA 863
Query: 87 HGNKLTDQKVINYIQQAI 104
H L+D ++ + +Q AI
Sbjct: 864 HNQPLSDPQLCSRLQDAI 881
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LEL A +R GLL+ I ++ E L++ A +AT GE+ + F++ D
Sbjct: 817 LELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITD 862
>sp|Q60BB2|GLND_METCA [Protein-PII] uridylyltransferase OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=glnD PE=3
SV=1
Length = 877
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 16 LPERIYGPT-----CR------VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLT 64
LPE I T CR V + ES+ V + ++ L + VL + LT
Sbjct: 662 LPEEIAWHTTAIAACRPEHLPLVLLRPESLRGSVEVFIYERNRDFLFAQTTAVLDQLGLT 721
Query: 65 I-SKSYISSDAGWFMDVFHVKDEHGNK----LTDQKVINYIQQAIGTTGEIPSSAVAK-- 117
+ I+S G+ + F+V + G ++ + +++A+ + G P AV++
Sbjct: 722 VLDAKIIASRQGFALLSFNVLERSGTAPEGLFRLVQICDRLKEAL-SGGGAPPPAVSRLA 780
Query: 118 -------TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170
T K F + + + +E+ TDRPGL S++ A + A +
Sbjct: 781 TRQIRHFTVPTKVFFHDDPQNRFSILELIATDRPGLLSKVGQAFMRTGIRLHNAKISTVG 840
Query: 171 DRLACVAYVSDQSTDTPID 189
R + +++D+ D P+D
Sbjct: 841 SRAEDIFFITDRE-DRPLD 858
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVD 425
LEL A +R GLLS + + G+ + A ++T G ++ + F++ D +D
Sbjct: 806 LELIATDRPGLLSKVGQAFMRTGIRLHNAKISTVGSRAEDIFFITDREDRPLD 858
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N++ T++++ + + GLL + Q+ D +L++ + I++ DVF V D
Sbjct: 803 QVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTD 862
Query: 86 EHGNKLTDQKVINYIQQAI 104
L+D ++ +QQAI
Sbjct: 863 ADNQPLSDPQLCLRLQQAI 881
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPG 192
T +E+ DRPGL + + D ++ A + +R+ V +V+D + + P+ DP
Sbjct: 814 QTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTD-ADNQPLSDPQ 872
Query: 193 RLATIEEYITTVLRATAERSPSETHI 218
+++ I L+ E+ PS + I
Sbjct: 873 LCLRLQQAIIKELQQENEQQPSPSSI 898
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ + ++ + L+V A +AT GE+ + F++ D
Sbjct: 817 LEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTD 862
>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=glnD PE=3 SV=1
Length = 874
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKD 85
V I ++ T V V S + L +V L N + + I +S G+ +D F V D
Sbjct: 681 VLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTFMVLD 740
Query: 86 EHGNKLTDQK---VINYIQQAIG-------TTGEIPSSAVAKTYTNKAVFGSEYPSEHTA 135
+HG + + + V +I + T P+ K F + T
Sbjct: 741 QHGKAIEEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSKKRTL 800
Query: 136 IEMTGTDRPGLFSEISAALADLHCNI 161
+E D PGL +++ ADL N+
Sbjct: 801 MEFVALDTPGLLAKVGRTFADLGINL 826
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/180 (19%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 55 VQVLTDMNLTISKSYISSDAGWF-MDVFHVKDEHGNKLTD-----QKVINYIQQAIGTTG 108
V ++ +NL I + I + + F +D + V D G + D +++ + + +A+
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 109 EIPSSAVAKTYTNKAVFGSEYPSEHTAI----------EMTGTDRPGLFSEISAALADLH 158
+ P+ + + + + ++P + T + E+T DRPGL + + +
Sbjct: 782 DYPT--IIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFD 839
Query: 159 CNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATAERSPSETHI 218
++ A + +R+ V +++D + + P+ DP + ++E I L+A S T +
Sbjct: 840 LSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQEAIVQQLQAGQGSDTSPTRV 898
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 44/79 (55%)
Query: 26 RVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKD 85
+V I N++ T++++ + + GLL + ++ + +L++ + I++ DVF + D
Sbjct: 803 QVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
Query: 86 EHGNKLTDQKVINYIQQAI 104
L+D ++ + +Q+AI
Sbjct: 863 ADNQPLSDPQLCSRLQEAI 881
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418
LE+ A +R GLL+ + R+ E L++ A +AT GE+ + F++ D
Sbjct: 817 LEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862
>sp|Q8DBG3|GLND_VIBVU [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
CMCP6) GN=glnD PE=3 SV=1
Length = 873
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 11/146 (7%)
Query: 27 VCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKD 85
V + ++ T V V + + L +V L N + + I SS G+ +D F V D
Sbjct: 681 VLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKDGYVLDTFMVLD 740
Query: 86 EHGNKL---TDQKVINYIQQAIG-------TTGEIPSSAVAKTYTNKAVFGSEYPSEHTA 135
+HG + + VI ++ + T P K F + T
Sbjct: 741 QHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTKVDFLPTKSKKRTL 800
Query: 136 IEMTGTDRPGLFSEISAALADLHCNI 161
+E+ D PGL + A AD+ N+
Sbjct: 801 MELVALDTPGLLAITGATFADMGFNL 826
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,931,735
Number of Sequences: 539616
Number of extensions: 7494121
Number of successful extensions: 18307
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 17955
Number of HSP's gapped (non-prelim): 371
length of query: 484
length of database: 191,569,459
effective HSP length: 121
effective length of query: 363
effective length of database: 126,275,923
effective search space: 45838160049
effective search space used: 45838160049
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)