Query 048063
Match_columns 484
No_of_seqs 343 out of 1963
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:55:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 1.5E-28 3.3E-33 278.2 24.0 189 12-206 653-854 (854)
2 PRK05007 PII uridylyl-transfer 100.0 6.8E-28 1.5E-32 273.8 24.3 190 12-207 676-880 (884)
3 PRK00275 glnD PII uridylyl-tra 100.0 2.8E-27 6.1E-32 268.8 24.7 191 12-209 675-889 (895)
4 PRK04374 PII uridylyl-transfer 99.9 2.7E-26 5.8E-31 259.4 24.9 190 12-206 664-867 (869)
5 PRK01759 glnD PII uridylyl-tra 99.9 7.4E-26 1.6E-30 256.4 24.3 190 118-363 663-853 (854)
6 PRK03059 PII uridylyl-transfer 99.9 1.1E-25 2.3E-30 254.9 23.9 187 12-206 652-855 (856)
7 PRK05007 PII uridylyl-transfer 99.9 2.2E-25 4.7E-30 253.4 25.1 191 119-364 688-879 (884)
8 TIGR01693 UTase_glnD [Protein- 99.9 1.7E-25 3.7E-30 254.5 24.2 189 12-205 642-849 (850)
9 PRK05092 PII uridylyl-transfer 99.9 3E-25 6.5E-30 254.2 25.3 196 12-209 705-918 (931)
10 PRK00275 glnD PII uridylyl-tra 99.9 6.6E-25 1.4E-29 249.5 26.2 183 131-364 702-886 (895)
11 COG2844 GlnD UTP:GlnB (protein 99.9 1E-25 2.2E-30 243.2 18.1 164 277-442 669-862 (867)
12 COG2844 GlnD UTP:GlnB (protein 99.9 2E-25 4.3E-30 241.0 19.8 188 11-207 658-863 (867)
13 PRK03381 PII uridylyl-transfer 99.9 6.8E-25 1.5E-29 246.3 23.9 175 21-202 586-773 (774)
14 TIGR01693 UTase_glnD [Protein- 99.9 5.6E-24 1.2E-28 242.2 25.0 193 120-363 656-849 (850)
15 PRK05092 PII uridylyl-transfer 99.9 3.3E-23 7E-28 237.5 26.3 195 120-364 720-915 (931)
16 PRK04374 PII uridylyl-transfer 99.9 3.3E-23 7.2E-28 234.4 25.2 181 128-363 685-866 (869)
17 PRK03059 PII uridylyl-transfer 99.9 5.3E-23 1.1E-27 233.1 24.8 184 125-363 670-854 (856)
18 PRK03381 PII uridylyl-transfer 99.9 1.3E-22 2.7E-27 228.0 23.4 181 125-359 592-772 (774)
19 cd04895 ACT_ACR_1 ACT domain-c 99.8 3.3E-18 7.1E-23 135.7 10.2 67 370-436 1-68 (72)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 7.9E-18 1.7E-22 134.5 11.1 73 133-206 1-73 (75)
21 cd04895 ACT_ACR_1 ACT domain-c 99.7 3.1E-17 6.7E-22 130.1 10.6 69 133-202 1-69 (72)
22 cd04897 ACT_ACR_3 ACT domain-c 99.7 3.9E-17 8.4E-22 130.5 11.1 75 292-366 1-75 (75)
23 cd04896 ACT_ACR-like_3 ACT dom 99.7 1.1E-16 2.4E-21 127.9 9.3 65 371-436 1-68 (75)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 2E-16 4.4E-21 126.3 10.6 72 134-207 1-74 (75)
25 cd04925 ACT_ACR_2 ACT domain-c 99.6 2.4E-15 5.3E-20 120.6 11.0 73 134-207 1-74 (74)
26 PRK11589 gcvR glycine cleavage 99.6 7.2E-15 1.6E-19 138.4 14.7 144 289-436 5-169 (190)
27 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.1E-14 2.5E-19 116.3 10.8 72 133-205 1-73 (73)
28 PRK11589 gcvR glycine cleavage 99.6 7.3E-14 1.6E-18 131.6 14.4 159 35-205 6-166 (190)
29 cd04927 ACT_ACR-like_2 Second 99.5 5.3E-14 1.2E-18 113.4 11.2 71 135-207 2-73 (76)
30 COG2716 GcvR Glycine cleavage 99.5 4.8E-14 1E-18 127.6 6.9 143 289-436 2-166 (176)
31 cd04925 ACT_ACR_2 ACT domain-c 99.5 3.2E-13 6.9E-18 108.3 10.9 71 293-363 1-72 (74)
32 cd04900 ACT_UUR-like_1 ACT dom 99.5 3.9E-13 8.4E-18 107.4 10.4 70 293-362 2-72 (73)
33 cd04927 ACT_ACR-like_2 Second 99.4 8.5E-13 1.9E-17 106.4 10.9 69 294-363 2-71 (76)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 1.5E-12 3.2E-17 102.1 9.7 53 38-90 2-55 (68)
35 COG2716 GcvR Glycine cleavage 99.3 1E-11 2.2E-16 112.6 12.0 160 35-209 3-166 (176)
36 cd04928 ACT_TyrKc Uncharacteri 99.3 9E-12 2E-16 97.7 9.7 64 293-362 2-66 (68)
37 cd04926 ACT_ACR_4 C-terminal 99.3 2.4E-11 5.1E-16 96.9 10.4 67 134-202 2-68 (72)
38 cd04926 ACT_ACR_4 C-terminal 99.3 3.6E-11 7.9E-16 95.8 10.3 70 370-440 1-70 (72)
39 PRK00227 glnD PII uridylyl-tra 99.2 1.1E-10 2.3E-15 129.3 15.8 145 38-207 547-692 (693)
40 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.5E-10 3.3E-15 91.0 10.5 70 134-205 1-70 (70)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.1 1.1E-09 2.4E-14 86.0 10.3 69 293-362 1-69 (70)
42 PRK00227 glnD PII uridylyl-tra 99.0 4.1E-09 8.9E-14 116.9 13.3 120 293-417 547-674 (693)
43 cd04873 ACT_UUR-ACR-like ACT d 98.9 2E-08 4.2E-13 78.5 10.5 70 134-205 1-70 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.8 7.5E-08 1.6E-12 75.1 10.0 66 371-436 1-66 (70)
45 COG4747 ACT domain-containing 98.5 3.8E-06 8.3E-11 71.8 14.4 114 38-181 4-118 (142)
46 PF13740 ACT_6: ACT domain; PD 98.5 8.5E-07 1.8E-11 71.3 10.0 65 133-205 2-66 (76)
47 PF13740 ACT_6: ACT domain; PD 98.5 1E-06 2.2E-11 70.9 9.8 63 37-106 2-64 (76)
48 cd04894 ACT_ACR-like_1 ACT dom 98.5 4.2E-07 9.2E-12 68.8 6.2 66 38-106 1-66 (69)
49 PF01842 ACT: ACT domain; Int 98.4 3.6E-06 7.8E-11 64.7 9.9 62 134-204 1-64 (66)
50 cd04893 ACT_GcvR_1 ACT domains 98.3 4.6E-06 1E-10 67.2 8.9 40 293-332 2-41 (77)
51 cd04893 ACT_GcvR_1 ACT domains 98.3 3.9E-06 8.5E-11 67.6 8.3 47 38-84 2-48 (77)
52 cd04870 ACT_PSP_1 CT domains f 98.2 3.4E-06 7.5E-11 67.5 7.3 65 372-436 1-67 (75)
53 cd04870 ACT_PSP_1 CT domains f 98.2 4.6E-06 9.9E-11 66.8 7.8 65 135-206 1-65 (75)
54 PF01842 ACT: ACT domain; Int 98.2 2.4E-06 5.2E-11 65.7 5.9 46 371-416 1-46 (66)
55 cd04894 ACT_ACR-like_1 ACT dom 97.9 3.1E-05 6.8E-10 58.8 6.7 67 134-204 1-67 (69)
56 cd04872 ACT_1ZPV ACT domain pr 97.9 3.4E-05 7.5E-10 63.6 7.4 66 134-205 2-67 (88)
57 cd04872 ACT_1ZPV ACT domain pr 97.8 5E-05 1.1E-09 62.7 7.0 66 371-436 2-70 (88)
58 PRK00194 hypothetical protein; 97.8 6.1E-05 1.3E-09 62.3 7.3 69 133-208 3-71 (90)
59 PRK07431 aspartate kinase; Pro 97.8 0.021 4.6E-07 63.3 29.0 287 44-436 278-580 (587)
60 cd04869 ACT_GcvR_2 ACT domains 97.8 0.00013 2.9E-09 58.7 8.7 64 135-205 1-70 (81)
61 cd04875 ACT_F4HF-DF N-terminal 97.8 0.00012 2.6E-09 58.2 8.1 67 135-205 1-67 (74)
62 cd04869 ACT_GcvR_2 ACT domains 97.7 0.00021 4.5E-09 57.6 8.8 48 39-86 1-54 (81)
63 PRK00194 hypothetical protein; 97.7 0.00011 2.4E-09 60.7 7.1 47 370-416 3-49 (90)
64 cd04875 ACT_F4HF-DF N-terminal 97.7 0.00019 4.2E-09 57.0 7.6 35 294-328 1-35 (74)
65 PF13291 ACT_4: ACT domain; PD 97.6 0.00036 7.9E-09 56.2 9.0 64 132-202 5-70 (80)
66 TIGR00655 PurU formyltetrahydr 97.6 0.0023 4.9E-08 64.4 15.3 115 39-168 2-119 (280)
67 PRK13010 purU formyltetrahydro 97.6 0.0017 3.8E-08 65.4 14.3 118 37-168 9-128 (289)
68 COG4747 ACT domain-containing 97.5 0.0044 9.4E-08 53.4 13.8 112 294-417 5-117 (142)
69 PRK06027 purU formyltetrahydro 97.5 0.0019 4.2E-08 65.1 13.9 49 36-84 5-55 (286)
70 cd04898 ACT_ACR-like_4 ACT dom 97.5 0.00013 2.9E-09 57.5 4.2 67 372-439 2-77 (77)
71 PF13291 ACT_4: ACT domain; PD 97.5 0.0011 2.4E-08 53.3 9.5 63 38-106 7-71 (80)
72 COG3830 ACT domain-containing 97.4 0.00025 5.5E-09 58.2 4.9 68 133-206 3-70 (90)
73 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0016 3.5E-08 51.3 9.4 61 136-203 2-63 (74)
74 COG3830 ACT domain-containing 97.3 0.00036 7.7E-09 57.4 4.3 48 37-84 3-50 (90)
75 cd04887 ACT_MalLac-Enz ACT_Mal 97.2 0.0032 7E-08 49.6 9.6 61 40-106 2-63 (74)
76 PRK13011 formyltetrahydrofolat 97.2 0.011 2.4E-07 59.6 15.3 116 37-168 7-124 (286)
77 PRK06027 purU formyltetrahydro 97.2 0.0095 2.1E-07 60.1 14.6 40 291-330 5-46 (286)
78 PRK13010 purU formyltetrahydro 97.1 0.011 2.3E-07 59.8 14.0 35 292-326 9-43 (289)
79 TIGR00655 PurU formyltetrahydr 97.1 0.012 2.6E-07 59.2 14.3 101 294-399 2-113 (280)
80 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0055 1.2E-07 47.3 9.2 33 136-168 1-33 (73)
81 PRK13011 formyltetrahydrofolat 97.0 0.0032 7E-08 63.5 9.7 68 132-206 6-75 (286)
82 cd04877 ACT_TyrR N-terminal AC 97.0 0.0028 6E-08 50.4 7.2 35 135-169 2-36 (74)
83 PRK06737 acetolactate synthase 97.0 0.0052 1.1E-07 49.4 8.6 64 134-204 3-67 (76)
84 cd04908 ACT_Bt0572_1 N-termina 97.0 0.005 1.1E-07 47.7 8.3 45 134-180 2-46 (66)
85 COG0788 PurU Formyltetrahydrof 96.9 0.0041 8.8E-08 61.0 8.6 47 36-82 6-54 (287)
86 cd04889 ACT_PDH-BS-like C-term 96.9 0.0037 8E-08 46.6 6.4 46 136-181 1-47 (56)
87 PRK06737 acetolactate synthase 96.9 0.0083 1.8E-07 48.3 8.6 61 371-436 3-64 (76)
88 PRK08178 acetolactate synthase 96.8 0.0081 1.8E-07 50.3 8.6 67 131-205 6-73 (96)
89 cd04908 ACT_Bt0572_1 N-termina 96.8 0.0077 1.7E-07 46.6 7.7 45 371-417 2-46 (66)
90 PRK13562 acetolactate synthase 96.7 0.0089 1.9E-07 48.8 7.9 66 134-205 3-69 (84)
91 CHL00100 ilvH acetohydroxyacid 96.7 0.012 2.5E-07 55.0 9.7 66 134-205 3-68 (174)
92 cd04888 ACT_PheB-BS C-terminal 96.7 0.013 2.9E-07 46.1 8.7 62 135-203 2-65 (76)
93 cd04909 ACT_PDH-BS C-terminal 96.7 0.014 3.1E-07 45.3 8.6 36 134-169 2-37 (69)
94 cd04878 ACT_AHAS N-terminal AC 96.7 0.012 2.6E-07 45.1 8.2 59 372-436 2-62 (72)
95 cd04886 ACT_ThrD-II-like C-ter 96.6 0.015 3.2E-07 44.8 8.5 61 40-106 1-66 (73)
96 cd04905 ACT_CM-PDT C-terminal 96.6 0.014 3E-07 47.0 8.4 51 371-422 2-53 (80)
97 cd04898 ACT_ACR-like_4 ACT dom 96.6 0.0042 9E-08 49.2 5.0 66 294-359 2-70 (77)
98 cd04889 ACT_PDH-BS-like C-term 96.6 0.0067 1.5E-07 45.2 6.1 46 373-418 1-47 (56)
99 CHL00100 ilvH acetohydroxyacid 96.6 0.0071 1.5E-07 56.4 7.4 35 371-405 3-37 (174)
100 cd04878 ACT_AHAS N-terminal AC 96.6 0.021 4.6E-07 43.8 9.1 61 135-202 2-63 (72)
101 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.0074 1.6E-07 47.3 6.5 62 371-436 1-63 (79)
102 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.5 0.019 4.1E-07 44.9 8.7 62 135-202 2-64 (79)
103 COG0788 PurU Formyltetrahydrof 96.5 0.0069 1.5E-07 59.4 7.2 37 132-168 6-42 (287)
104 cd04909 ACT_PDH-BS C-terminal 96.4 0.0099 2.1E-07 46.2 6.3 47 371-417 2-50 (69)
105 TIGR00119 acolac_sm acetolacta 96.4 0.023 5E-07 52.2 9.6 64 134-205 2-67 (157)
106 PRK13562 acetolactate synthase 96.4 0.021 4.5E-07 46.7 8.0 63 371-436 3-65 (84)
107 PRK11895 ilvH acetolactate syn 96.4 0.026 5.7E-07 52.0 9.8 64 134-205 3-68 (161)
108 cd04874 ACT_Af1403 N-terminal 96.3 0.026 5.7E-07 43.4 8.3 36 135-170 2-37 (72)
109 PRK08178 acetolactate synthase 96.3 0.022 4.8E-07 47.7 7.9 71 370-447 8-81 (96)
110 cd04879 ACT_3PGDH-like ACT_3PG 96.3 0.026 5.7E-07 43.0 8.0 44 373-416 2-47 (71)
111 cd04905 ACT_CM-PDT C-terminal 96.3 0.052 1.1E-06 43.7 10.0 49 134-182 2-51 (80)
112 cd04879 ACT_3PGDH-like ACT_3PG 96.2 0.016 3.5E-07 44.2 6.5 44 136-179 2-47 (71)
113 cd04877 ACT_TyrR N-terminal AC 96.2 0.036 7.8E-07 43.9 8.5 59 39-106 2-60 (74)
114 TIGR00119 acolac_sm acetolacta 96.2 0.029 6.4E-07 51.5 8.9 71 371-446 2-74 (157)
115 cd04903 ACT_LSD C-terminal ACT 96.1 0.033 7.1E-07 42.6 7.9 33 373-405 2-34 (71)
116 PRK08577 hypothetical protein; 96.1 0.046 1E-06 48.9 9.7 42 129-170 52-93 (136)
117 PRK11152 ilvM acetolactate syn 96.1 0.042 9.1E-07 44.2 8.2 36 371-406 4-39 (76)
118 cd04882 ACT_Bt0572_2 C-termina 96.0 0.033 7.2E-07 42.3 7.4 36 135-170 1-36 (65)
119 cd04888 ACT_PheB-BS C-terminal 96.0 0.057 1.2E-06 42.5 9.0 62 39-106 2-65 (76)
120 PRK11895 ilvH acetolactate syn 96.0 0.045 9.8E-07 50.5 9.3 70 371-446 3-75 (161)
121 PRK11152 ilvM acetolactate syn 95.9 0.054 1.2E-06 43.6 8.1 62 134-204 4-67 (76)
122 cd04876 ACT_RelA-SpoT ACT dom 95.9 0.077 1.7E-06 39.4 8.7 45 136-180 1-46 (71)
123 PRK04435 hypothetical protein; 95.8 0.085 1.9E-06 47.9 10.2 73 125-203 61-134 (147)
124 cd04882 ACT_Bt0572_2 C-termina 95.8 0.032 6.9E-07 42.4 6.3 44 373-416 2-45 (65)
125 cd04874 ACT_Af1403 N-terminal 95.7 0.062 1.4E-06 41.2 7.9 35 372-406 2-36 (72)
126 cd04884 ACT_CBS C-terminal ACT 95.7 0.075 1.6E-06 41.7 8.1 34 136-169 2-35 (72)
127 cd04901 ACT_3PGDH C-terminal A 95.7 0.015 3.3E-07 44.8 4.1 58 373-434 2-59 (69)
128 cd04902 ACT_3PGDH-xct C-termin 95.6 0.058 1.3E-06 41.9 7.4 59 373-435 2-62 (73)
129 cd04903 ACT_LSD C-terminal ACT 95.5 0.055 1.2E-06 41.3 6.7 33 136-168 2-34 (71)
130 cd02116 ACT ACT domains are co 95.4 0.14 3.1E-06 35.9 8.4 35 136-170 1-35 (60)
131 cd04883 ACT_AcuB C-terminal AC 95.3 0.12 2.7E-06 40.1 8.3 35 134-168 2-36 (72)
132 cd04901 ACT_3PGDH C-terminal A 95.2 0.025 5.4E-07 43.6 3.9 45 40-84 2-46 (69)
133 cd04876 ACT_RelA-SpoT ACT dom 95.2 0.17 3.6E-06 37.5 8.3 59 373-436 1-60 (71)
134 cd04902 ACT_3PGDH-xct C-termin 95.2 0.056 1.2E-06 42.0 5.8 45 136-180 2-48 (73)
135 PRK08577 hypothetical protein; 95.1 0.3 6.4E-06 43.6 11.1 58 281-338 43-104 (136)
136 cd02116 ACT ACT domains are co 95.0 0.14 3E-06 36.0 7.3 35 373-407 1-35 (60)
137 cd04884 ACT_CBS C-terminal ACT 95.0 0.15 3.2E-06 40.0 7.9 61 40-106 2-65 (72)
138 cd04931 ACT_PAH ACT domain of 95.0 0.35 7.5E-06 40.2 10.4 74 128-206 9-83 (90)
139 cd04931 ACT_PAH ACT domain of 95.0 0.16 3.4E-06 42.2 8.2 64 371-436 15-82 (90)
140 PRK07334 threonine dehydratase 94.9 0.15 3.4E-06 53.8 10.2 65 132-203 325-394 (403)
141 PRK07431 aspartate kinase; Pro 94.9 2.6 5.6E-05 46.9 20.1 100 292-404 348-474 (587)
142 PF13710 ACT_5: ACT domain; PD 94.8 0.11 2.3E-06 40.2 6.4 57 142-205 1-58 (63)
143 cd04883 ACT_AcuB C-terminal AC 94.8 0.13 2.8E-06 39.9 7.0 34 371-404 2-35 (72)
144 PRK04435 hypothetical protein; 94.7 0.38 8.2E-06 43.7 10.7 74 28-106 60-134 (147)
145 cd04871 ACT_PSP_2 ACT domains 94.6 0.026 5.6E-07 46.3 2.5 62 135-204 1-72 (84)
146 cd04904 ACT_AAAH ACT domain of 94.5 0.22 4.7E-06 39.6 7.6 48 373-421 3-51 (74)
147 PRK10872 relA (p)ppGpp synthet 94.4 0.25 5.4E-06 56.0 10.7 72 125-203 657-731 (743)
148 cd04880 ACT_AAAH-PDT-like ACT 94.4 0.46 1E-05 37.5 9.4 64 136-203 2-66 (75)
149 cd04880 ACT_AAAH-PDT-like ACT 94.1 0.37 7.9E-06 38.0 8.2 49 373-422 2-51 (75)
150 TIGR00656 asp_kin_monofn aspar 93.8 2.7 5.9E-05 44.3 16.5 106 36-163 259-370 (401)
151 PRK11092 bifunctional (p)ppGpp 93.5 0.48 1E-05 53.6 10.6 71 125-202 617-689 (702)
152 PRK07334 threonine dehydratase 93.3 0.44 9.6E-06 50.4 9.7 63 38-106 327-394 (403)
153 PF13710 ACT_5: ACT domain; PD 93.2 0.34 7.4E-06 37.4 6.4 31 379-409 1-31 (63)
154 TIGR00656 asp_kin_monofn aspar 93.1 2.2 4.7E-05 45.0 14.6 102 290-402 258-372 (401)
155 PRK11899 prephenate dehydratas 93.1 0.39 8.4E-06 48.3 8.3 56 371-427 195-251 (279)
156 cd04885 ACT_ThrD-I Tandem C-te 93.0 0.53 1.1E-05 36.6 7.3 60 40-106 1-61 (68)
157 PRK06635 aspartate kinase; Rev 92.9 1.3 2.9E-05 46.7 12.5 103 291-402 261-375 (404)
158 TIGR00691 spoT_relA (p)ppGpp s 92.9 0.65 1.4E-05 52.5 10.6 71 125-202 601-673 (683)
159 cd04929 ACT_TPH ACT domain of 92.9 0.46 1E-05 37.9 6.8 50 373-423 3-53 (74)
160 cd04885 ACT_ThrD-I Tandem C-te 92.7 0.72 1.6E-05 35.8 7.7 60 137-203 2-61 (68)
161 PRK06635 aspartate kinase; Rev 92.6 3.6 7.7E-05 43.4 15.3 108 38-165 263-375 (404)
162 cd04904 ACT_AAAH ACT domain of 92.5 1 2.2E-05 35.7 8.4 48 135-182 2-50 (74)
163 PRK10872 relA (p)ppGpp synthet 92.5 0.84 1.8E-05 51.9 10.7 74 27-106 655-731 (743)
164 PRK06291 aspartate kinase; Pro 92.3 6.2 0.00013 42.6 16.9 111 36-168 320-436 (465)
165 PRK08210 aspartate kinase I; R 92.1 5.5 0.00012 42.0 15.9 99 36-163 270-372 (403)
166 COG0317 SpoT Guanosine polypho 92.0 0.68 1.5E-05 52.0 9.2 71 125-202 618-690 (701)
167 COG1707 ACT domain-containing 91.8 0.51 1.1E-05 43.3 6.6 47 135-181 4-50 (218)
168 TIGR00719 sda_beta L-serine de 91.8 0.73 1.6E-05 44.3 8.2 59 369-431 147-207 (208)
169 TIGR00719 sda_beta L-serine de 91.7 0.64 1.4E-05 44.7 7.7 52 128-179 143-196 (208)
170 PF13840 ACT_7: ACT domain ; P 91.5 0.89 1.9E-05 35.2 6.8 46 132-182 5-54 (65)
171 PRK11092 bifunctional (p)ppGpp 91.3 1.5 3.3E-05 49.6 11.2 74 27-106 615-690 (702)
172 PF13840 ACT_7: ACT domain ; P 90.8 0.51 1.1E-05 36.5 4.9 43 371-418 7-53 (65)
173 TIGR00691 spoT_relA (p)ppGpp s 90.5 1.8 4E-05 49.0 10.8 74 27-106 599-674 (683)
174 PRK11790 D-3-phosphoglycerate 90.4 0.56 1.2E-05 49.8 6.3 61 370-434 338-398 (409)
175 cd04929 ACT_TPH ACT domain of 90.2 2.9 6.3E-05 33.3 8.9 48 135-182 2-50 (74)
176 cd04930 ACT_TH ACT domain of t 90.1 1.2 2.6E-05 38.7 7.1 52 371-423 42-94 (115)
177 KOG2663 Acetolactate synthase, 90.1 0.73 1.6E-05 45.1 6.2 66 132-205 76-143 (309)
178 PRK11899 prephenate dehydratas 89.8 2.6 5.6E-05 42.5 10.2 50 133-182 194-244 (279)
179 PRK06545 prephenate dehydrogen 89.4 1.3 2.9E-05 46.0 8.1 52 130-181 287-338 (359)
180 PRK06382 threonine dehydratase 89.3 2.1 4.6E-05 45.3 9.7 67 130-203 327-398 (406)
181 COG0077 PheA Prephenate dehydr 89.3 1.5 3.2E-05 44.0 7.9 55 370-425 194-249 (279)
182 PRK08210 aspartate kinase I; R 88.7 4.9 0.00011 42.5 11.9 125 290-436 269-400 (403)
183 COG1707 ACT domain-containing 88.7 1.5 3.1E-05 40.5 6.7 45 39-83 4-50 (218)
184 cd04871 ACT_PSP_2 ACT domains 88.2 0.31 6.7E-06 39.9 1.9 31 39-69 1-32 (84)
185 PRK11790 D-3-phosphoglycerate 88.0 1 2.2E-05 47.8 6.2 48 132-179 337-384 (409)
186 PRK10622 pheA bifunctional cho 87.8 2.1 4.5E-05 45.2 8.3 55 371-426 298-353 (386)
187 PRK09034 aspartate kinase; Rev 87.7 19 0.00042 38.7 15.8 138 36-207 307-450 (454)
188 cd04906 ACT_ThrD-I_1 First of 87.6 4.3 9.2E-05 33.0 8.4 61 135-203 3-64 (85)
189 COG0440 IlvH Acetolactate synt 86.9 2.3 4.9E-05 39.2 6.9 67 133-206 4-71 (163)
190 PRK06291 aspartate kinase; Pro 86.7 16 0.00034 39.6 14.5 129 290-436 319-461 (465)
191 PRK09034 aspartate kinase; Rev 86.7 14 0.00031 39.7 14.1 132 291-436 307-448 (454)
192 cd04906 ACT_ThrD-I_1 First of 86.5 4.9 0.00011 32.6 8.2 62 39-107 3-65 (85)
193 PRK09436 thrA bifunctional asp 86.5 25 0.00054 40.9 16.8 115 36-168 314-434 (819)
194 PRK06349 homoserine dehydrogen 86.4 2.8 6E-05 44.8 8.5 63 370-436 348-410 (426)
195 COG0317 SpoT Guanosine polypho 86.3 4.2 9E-05 45.9 9.9 76 26-107 615-692 (701)
196 COG0077 PheA Prephenate dehydr 86.1 4.7 0.0001 40.5 9.2 51 132-182 193-244 (279)
197 PRK08818 prephenate dehydrogen 86.0 1.6 3.4E-05 45.8 6.2 47 370-417 295-342 (370)
198 PRK08818 prephenate dehydrogen 85.5 1.9 4.2E-05 45.1 6.5 50 132-182 294-344 (370)
199 PLN02551 aspartokinase 85.5 46 0.001 36.6 17.4 139 36-207 365-509 (521)
200 PRK06349 homoserine dehydrogen 85.1 4 8.7E-05 43.6 8.9 53 130-182 345-397 (426)
201 PRK12483 threonine dehydratase 85.0 45 0.00097 36.7 17.0 134 36-178 344-484 (521)
202 PRK08198 threonine dehydratase 84.9 6.9 0.00015 41.3 10.5 38 130-167 324-361 (404)
203 cd04930 ACT_TH ACT domain of t 84.4 3.9 8.4E-05 35.6 6.9 50 133-182 41-91 (115)
204 TIGR01127 ilvA_1Cterm threonin 83.7 7.8 0.00017 40.5 10.2 65 132-203 304-373 (380)
205 PRK09181 aspartate kinase; Val 83.6 40 0.00086 36.6 15.7 105 36-166 328-437 (475)
206 PRK06545 prephenate dehydrogen 82.9 4.2 9E-05 42.3 7.7 47 370-416 290-336 (359)
207 TIGR00657 asp_kinases aspartat 82.9 67 0.0014 34.3 17.1 108 36-165 301-413 (441)
208 PRK06382 threonine dehydratase 82.6 6.6 0.00014 41.6 9.2 65 36-106 329-398 (406)
209 PRK09181 aspartate kinase; Val 82.1 16 0.00035 39.7 12.0 102 291-403 328-437 (475)
210 PLN02317 arogenate dehydratase 81.3 5.9 0.00013 41.6 8.0 54 371-425 284-352 (382)
211 COG0440 IlvH Acetolactate synt 81.2 26 0.00056 32.4 11.2 110 38-165 5-118 (163)
212 PRK09436 thrA bifunctional asp 81.2 18 0.0004 41.9 12.8 102 290-402 313-431 (819)
213 PRK13581 D-3-phosphoglycerate 80.9 3.7 7.9E-05 45.1 6.7 61 370-434 452-514 (526)
214 PRK13581 D-3-phosphoglycerate 80.8 3.2 7E-05 45.6 6.3 52 128-179 447-500 (526)
215 PLN02551 aspartokinase 79.6 30 0.00064 38.1 13.1 133 290-436 364-507 (521)
216 PRK08198 threonine dehydratase 79.4 12 0.00026 39.4 9.9 65 36-106 326-395 (404)
217 COG2150 Predicted regulator of 79.0 1.6 3.4E-05 40.0 2.6 35 36-70 94-128 (167)
218 COG0527 LysC Aspartokinases [A 78.8 60 0.0013 35.0 14.9 127 290-436 305-444 (447)
219 PRK10622 pheA bifunctional cho 78.6 14 0.00031 38.9 10.0 51 132-182 296-347 (386)
220 KOG2663 Acetolactate synthase, 78.0 5.1 0.00011 39.4 5.8 36 369-404 76-111 (309)
221 TIGR01327 PGDH D-3-phosphoglyc 77.8 4 8.6E-05 44.8 5.8 51 129-179 447-499 (525)
222 TIGR00657 asp_kinases aspartat 77.5 56 0.0012 34.9 14.4 101 291-402 301-413 (441)
223 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.6 26 0.00057 26.0 8.6 34 135-168 3-39 (66)
224 TIGR01127 ilvA_1Cterm threonin 76.6 14 0.0003 38.7 9.2 63 38-106 306-373 (380)
225 cd04919 ACT_AK-Hom3_2 ACT doma 76.1 28 0.00061 26.0 8.6 34 135-168 3-39 (66)
226 PRK11898 prephenate dehydratas 75.8 10 0.00023 38.2 7.7 52 371-423 197-250 (283)
227 TIGR01327 PGDH D-3-phosphoglyc 75.7 5.6 0.00012 43.7 6.2 61 370-434 451-513 (525)
228 cd04932 ACT_AKiii-LysC-EC_1 AC 75.4 21 0.00045 28.4 7.9 59 372-436 3-65 (75)
229 PRK14630 hypothetical protein; 75.3 26 0.00057 31.6 9.4 89 301-395 6-97 (143)
230 COG0527 LysC Aspartokinases [A 75.1 1.2E+02 0.0027 32.6 16.1 108 35-165 305-418 (447)
231 PRK14646 hypothetical protein; 75.0 30 0.00064 31.7 9.8 93 304-398 8-103 (155)
232 cd04937 ACT_AKi-DapG-BS_2 ACT 74.5 28 0.00061 26.3 8.2 28 135-162 3-33 (64)
233 PLN02550 threonine dehydratase 74.4 1E+02 0.0022 34.5 15.5 133 37-178 417-554 (591)
234 cd04935 ACT_AKiii-DAPDC_1 ACT 73.8 17 0.00036 28.9 7.0 54 378-436 12-65 (75)
235 PRK14634 hypothetical protein; 73.8 32 0.0007 31.5 9.8 89 303-395 7-100 (155)
236 cd04932 ACT_AKiii-LysC-EC_1 AC 73.3 33 0.00071 27.2 8.6 31 135-165 3-36 (75)
237 PRK14636 hypothetical protein; 72.8 27 0.00058 32.8 9.1 90 302-395 4-98 (176)
238 PRK14645 hypothetical protein; 72.6 33 0.00071 31.5 9.4 92 302-395 8-102 (154)
239 PRK09084 aspartate kinase III; 71.4 35 0.00076 36.7 10.9 99 290-396 304-413 (448)
240 TIGR01268 Phe4hydrox_tetr phen 70.2 19 0.00042 38.4 8.3 52 371-423 17-69 (436)
241 PF05088 Bac_GDH: Bacterial NA 70.1 2.9E+02 0.0063 34.6 21.2 187 23-211 327-571 (1528)
242 cd04922 ACT_AKi-HSDH-ThrA_2 AC 70.0 15 0.00032 27.5 5.7 44 372-417 3-49 (66)
243 PRK09466 metL bifunctional asp 69.5 2.3E+02 0.0049 33.1 17.8 104 36-164 316-425 (810)
244 PRK09084 aspartate kinase III; 68.8 87 0.0019 33.7 13.2 102 36-158 305-412 (448)
245 cd04890 ACT_AK-like_1 ACT doma 68.3 36 0.00077 25.3 7.5 51 378-436 11-61 (62)
246 cd04912 ACT_AKiii-LysC-EC-like 68.0 37 0.00081 26.6 7.8 62 135-203 3-67 (75)
247 PRK09224 threonine dehydratase 67.7 91 0.002 34.1 13.3 124 36-166 327-455 (504)
248 cd04913 ACT_AKii-LysC-BS-like_ 67.5 13 0.00028 28.2 5.0 26 378-403 10-35 (75)
249 cd04913 ACT_AKii-LysC-BS-like_ 67.0 38 0.00082 25.5 7.6 27 140-166 9-35 (75)
250 PRK08526 threonine dehydratase 66.8 39 0.00085 35.8 10.0 67 130-203 323-394 (403)
251 COG2150 Predicted regulator of 66.7 8.6 0.00019 35.3 4.2 36 132-167 92-129 (167)
252 PLN02317 arogenate dehydratase 66.6 40 0.00087 35.5 9.8 50 133-182 283-347 (382)
253 COG4492 PheB ACT domain-contai 65.6 41 0.00088 30.0 8.0 72 126-203 65-137 (150)
254 cd04937 ACT_AKi-DapG-BS_2 ACT 65.1 18 0.00038 27.4 5.2 28 372-399 3-33 (64)
255 PRK11898 prephenate dehydratas 64.9 48 0.001 33.4 9.8 51 132-182 195-247 (283)
256 cd04891 ACT_AK-LysC-DapG-like_ 64.8 33 0.00071 24.6 6.6 41 377-417 8-49 (61)
257 cd04912 ACT_AKiii-LysC-EC-like 64.7 51 0.0011 25.8 8.0 29 294-322 3-34 (75)
258 TIGR01270 Trp_5_monoox tryptop 64.5 17 0.00038 39.0 6.7 52 371-423 32-85 (464)
259 cd04935 ACT_AKiii-DAPDC_1 ACT 63.4 49 0.0011 26.2 7.6 56 141-203 12-67 (75)
260 cd04891 ACT_AK-LysC-DapG-like_ 63.3 24 0.00052 25.3 5.6 28 140-167 8-35 (61)
261 cd04924 ACT_AK-Arch_2 ACT doma 63.3 58 0.0013 24.0 8.7 34 135-168 3-39 (66)
262 cd04919 ACT_AK-Hom3_2 ACT doma 62.9 25 0.00055 26.3 5.8 44 372-417 3-49 (66)
263 PRK12483 threonine dehydratase 61.7 1.6E+02 0.0034 32.5 13.7 116 291-415 344-484 (521)
264 PRK10820 DNA-binding transcrip 61.6 10 0.00022 41.7 4.5 36 372-407 2-37 (520)
265 TIGR01268 Phe4hydrox_tetr phen 61.4 53 0.0011 35.2 9.5 66 133-203 16-82 (436)
266 COG3978 Acetolactate synthase 61.4 61 0.0013 26.3 7.6 65 133-206 3-69 (86)
267 cd04868 ACT_AK-like ACT domain 60.8 18 0.0004 25.6 4.5 33 372-404 2-37 (60)
268 cd04916 ACT_AKiii-YclM-BS_2 AC 60.5 66 0.0014 23.7 8.7 34 135-168 3-39 (66)
269 PRK08961 bifunctional aspartat 60.3 3.3E+02 0.0071 32.0 16.8 103 36-161 321-429 (861)
270 cd04868 ACT_AK-like ACT domain 60.2 17 0.00037 25.8 4.2 32 135-166 2-36 (60)
271 PRK14640 hypothetical protein; 60.0 1E+02 0.0022 28.0 10.1 90 305-398 8-100 (152)
272 PRK14639 hypothetical protein; 58.3 97 0.0021 27.8 9.5 87 309-398 3-91 (140)
273 cd04890 ACT_AK-like_1 ACT doma 58.2 65 0.0014 23.8 7.3 37 141-181 11-47 (62)
274 PRK14647 hypothetical protein; 58.0 1.2E+02 0.0026 27.8 10.3 88 305-396 10-100 (159)
275 TIGR01270 Trp_5_monoox tryptop 57.0 48 0.001 35.7 8.4 54 129-182 27-82 (464)
276 PRK08961 bifunctional aspartat 56.7 99 0.0021 36.2 11.7 134 290-439 320-462 (861)
277 PRK14637 hypothetical protein; 55.4 1.5E+02 0.0033 27.0 10.3 88 302-395 7-98 (151)
278 cd04924 ACT_AK-Arch_2 ACT doma 55.4 40 0.00087 24.9 5.7 45 372-418 3-50 (66)
279 cd04892 ACT_AK-like_2 ACT doma 54.9 39 0.00085 24.4 5.6 32 372-403 2-36 (65)
280 PRK14638 hypothetical protein; 54.3 1.5E+02 0.0034 26.9 10.2 87 305-396 10-101 (150)
281 PRK08526 threonine dehydratase 54.3 77 0.0017 33.6 9.5 66 35-106 324-394 (403)
282 PRK00092 ribosome maturation p 54.1 1.5E+02 0.0032 26.9 10.2 85 305-395 9-98 (154)
283 PRK14631 hypothetical protein; 53.6 1.4E+02 0.003 27.9 10.0 93 304-397 9-119 (174)
284 PRK14633 hypothetical protein; 52.9 1.7E+02 0.0036 26.6 10.2 89 305-397 6-96 (150)
285 TIGR02079 THD1 threonine dehyd 52.3 1.1E+02 0.0023 32.5 10.3 67 130-203 322-390 (409)
286 COG2061 ACT-domain-containing 51.9 1.4E+02 0.003 27.4 9.2 75 292-402 5-80 (170)
287 cd04916 ACT_AKiii-YclM-BS_2 AC 51.7 49 0.0011 24.5 5.7 45 372-418 3-50 (66)
288 cd04892 ACT_AK-like_2 ACT doma 50.8 90 0.002 22.3 8.4 32 135-166 2-36 (65)
289 cd04918 ACT_AK1-AT_2 ACT domai 49.9 1.1E+02 0.0024 23.1 8.2 35 135-169 3-39 (65)
290 PRK08639 threonine dehydratase 49.8 98 0.0021 32.9 9.5 68 130-203 333-401 (420)
291 PRK14643 hypothetical protein; 49.1 1.9E+02 0.0041 26.7 10.1 92 304-398 10-107 (164)
292 PRK05974 phosphoribosylformylg 49.0 96 0.0021 24.9 7.2 65 372-443 2-72 (80)
293 PF05088 Bac_GDH: Bacterial NA 48.6 1.3E+02 0.0028 37.5 11.1 72 35-106 487-563 (1528)
294 COG3978 Acetolactate synthase 48.6 64 0.0014 26.2 5.8 46 371-416 4-51 (86)
295 cd04933 ACT_AK1-AT_1 ACT domai 48.3 71 0.0015 25.6 6.3 55 378-436 12-68 (78)
296 COG3283 TyrR Transcriptional r 48.2 40 0.00087 35.4 5.9 81 372-454 2-108 (511)
297 PRK09224 threonine dehydratase 48.1 3E+02 0.0065 30.1 13.1 110 291-407 327-459 (504)
298 cd04921 ACT_AKi-HSDH-ThrA-like 46.8 1.3E+02 0.0029 23.2 8.7 34 135-168 3-39 (80)
299 PF04083 Abhydro_lipase: Parti 46.0 53 0.0012 25.3 5.0 32 55-86 2-33 (63)
300 TIGR01124 ilvA_2Cterm threonin 45.6 2.8E+02 0.0061 30.3 12.4 114 36-166 324-451 (499)
301 PRK10820 DNA-binding transcrip 45.2 26 0.00055 38.5 4.3 36 135-170 2-37 (520)
302 cd04923 ACT_AK-LysC-DapG-like_ 45.1 62 0.0014 23.5 5.3 30 373-402 3-35 (63)
303 cd04936 ACT_AKii-LysC-BS-like_ 44.2 66 0.0014 23.3 5.3 42 373-418 3-47 (63)
304 cd04934 ACT_AK-Hom3_1 CT domai 44.1 1E+02 0.0022 24.2 6.5 51 379-436 13-63 (73)
305 PRK14632 hypothetical protein; 44.0 2.4E+02 0.0051 26.3 9.9 85 305-395 10-98 (172)
306 cd04923 ACT_AK-LysC-DapG-like_ 43.7 1.2E+02 0.0027 21.8 7.7 30 136-165 3-35 (63)
307 PF02576 DUF150: Uncharacteris 43.4 1.4E+02 0.0031 26.5 8.2 83 309-395 2-87 (141)
308 PTZ00324 glutamate dehydrogena 43.4 75 0.0016 37.6 7.8 91 10-102 201-299 (1002)
309 TIGR02079 THD1 threonine dehyd 43.1 1.5E+02 0.0033 31.4 9.7 66 36-107 324-391 (409)
310 PRK09466 metL bifunctional asp 42.3 3.7E+02 0.008 31.4 13.2 102 290-402 315-426 (810)
311 cd04934 ACT_AK-Hom3_1 CT domai 42.1 1.3E+02 0.0028 23.7 6.8 53 142-203 13-65 (73)
312 cd04915 ACT_AK-Ectoine_2 ACT d 41.5 1.6E+02 0.0034 22.5 7.2 33 134-166 3-37 (66)
313 COG4492 PheB ACT domain-contai 41.5 90 0.0019 27.9 6.2 49 290-338 70-119 (150)
314 cd04915 ACT_AK-Ectoine_2 ACT d 41.4 46 0.001 25.5 4.1 42 373-417 5-49 (66)
315 PLN02550 threonine dehydratase 41.2 3.7E+02 0.0081 30.1 12.5 129 293-436 418-570 (591)
316 PRK08841 aspartate kinase; Val 40.7 1.1E+02 0.0024 32.3 8.1 121 290-436 256-376 (392)
317 cd04921 ACT_AKi-HSDH-ThrA-like 40.3 1.1E+02 0.0024 23.7 6.3 35 372-406 3-40 (80)
318 PRK14644 hypothetical protein; 38.7 2.2E+02 0.0048 25.4 8.5 75 311-395 6-85 (136)
319 PRK00907 hypothetical protein; 38.7 1.1E+02 0.0023 25.6 6.0 65 37-107 17-85 (92)
320 cd04936 ACT_AKii-LysC-BS-like_ 38.6 1.5E+02 0.0032 21.4 8.0 30 136-165 3-35 (63)
321 cd04920 ACT_AKiii-DAPDC_2 ACT 37.5 1.8E+02 0.0038 21.9 7.3 27 135-161 2-31 (63)
322 PRK08639 threonine dehydratase 37.2 1.7E+02 0.0038 31.0 9.0 67 36-107 335-402 (420)
323 PRK06423 phosphoribosylformylg 37.2 1.9E+02 0.0042 22.7 7.1 58 375-444 5-67 (73)
324 cd04933 ACT_AK1-AT_1 ACT domai 34.3 42 0.00092 27.0 2.9 26 140-165 11-36 (78)
325 COG0779 Uncharacterized protei 33.8 2.1E+02 0.0045 26.2 7.7 77 303-383 8-89 (153)
326 TIGR01124 ilvA_2Cterm threonin 33.3 2.8E+02 0.0062 30.3 10.0 66 130-203 322-387 (499)
327 cd07247 SgaA_N_like N-terminal 30.9 1.7E+02 0.0037 23.8 6.3 51 290-346 60-110 (114)
328 PRK02047 hypothetical protein; 30.0 2.4E+02 0.0053 23.3 6.9 65 37-107 16-84 (91)
329 cd04914 ACT_AKi-DapG-BS_1 ACT 29.9 86 0.0019 24.1 3.9 31 135-165 3-34 (67)
330 COG3603 Uncharacterized conser 29.9 3.2E+02 0.0068 24.1 7.6 40 129-170 59-101 (128)
331 PRK00907 hypothetical protein; 29.7 2.7E+02 0.0058 23.2 7.0 51 132-182 16-70 (92)
332 cd04918 ACT_AK1-AT_2 ACT domai 29.6 1.3E+02 0.0028 22.7 4.9 43 372-417 3-48 (65)
333 PF04083 Abhydro_lipase: Parti 28.8 1.4E+02 0.003 23.0 4.8 33 310-342 2-34 (63)
334 PRK14635 hypothetical protein; 26.9 5E+02 0.011 23.8 9.3 95 300-398 3-102 (162)
335 cd04920 ACT_AKiii-DAPDC_2 ACT 23.4 1.4E+02 0.003 22.5 4.0 41 372-417 2-46 (63)
336 cd04914 ACT_AKi-DapG-BS_1 ACT 23.2 1.5E+02 0.0033 22.6 4.3 43 372-418 3-46 (67)
337 cd07247 SgaA_N_like N-terminal 21.1 3.2E+02 0.007 22.0 6.3 51 35-91 60-110 (114)
338 PRK00341 hypothetical protein; 20.7 4E+02 0.0086 22.0 6.5 62 38-106 18-83 (91)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.5e-28 Score=278.21 Aligned_cols=189 Identities=20% Similarity=0.268 Sum_probs=158.5
Q ss_pred hhhccccccc-CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCC
Q 048063 12 EFDTLPERIY-GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGN 89 (484)
Q Consensus 12 ~~~~l~~~~~-~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~ 89 (484)
||.+++.... +| .|.++++++.++++|+|+++||||||++||++|+.+|+||++|+|.| .+|+++|+|+|++++|.
T Consensus 653 ~h~~~~~~~~~~~--~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~ 730 (854)
T PRK01759 653 WHALLLLDFRGDL--LVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK 730 (854)
T ss_pred HHHHHHHhcCCCC--EEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC
Confidence 4555554433 45 78899999999999999999999999999999999999999999955 99999999999999998
Q ss_pred CCCcHHHHHHHHHH----HccCCC--C-CCcc----ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCC
Q 048063 90 KLTDQKVINYIQQA----IGTTGE--I-PSSA----VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLH 158 (484)
Q Consensus 90 ~~~~~~~~~~L~~~----L~~~~~--~-~~~~----~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~g 158 (484)
++. +++++.|++. |.+... . .+.. ...+|++|. |+|+.+..+|+|+|.+.||||||++|+++|+++|
T Consensus 731 ~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~-~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~ 808 (854)
T PRK01759 731 LLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVR-FLNEEKQEQTEMELFALDRAGLLAQVSQVFSELN 808 (854)
T ss_pred CCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEE-EccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCC
Confidence 875 4565555554 443321 0 0000 015688898 9999999999999999999999999999999999
Q ss_pred CeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 159 CNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 159 lnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
++|+.|+|.|.|++++|+|||++. .|.+++++++ ++|+++|.++|+
T Consensus 809 l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~~~l~ 854 (854)
T PRK01759 809 LNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLLSNLS 854 (854)
T ss_pred CEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhC
Confidence 999999999999999999999998 7999987666 999999998874
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=6.8e-28 Score=273.76 Aligned_cols=190 Identities=18% Similarity=0.216 Sum_probs=159.7
Q ss_pred hhhccccccc--CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCCC
Q 048063 12 EFDTLPERIY--GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEHG 88 (484)
Q Consensus 12 ~~~~l~~~~~--~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~g 88 (484)
+|.+++.+.. +| .|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+| |+.+|+++|+|+|++.+|
T Consensus 676 ~h~~~~~~~~~~~p--~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g 753 (884)
T PRK05007 676 WHARHLLQHDLDKP--LVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDG 753 (884)
T ss_pred HHHHHHHhccCCCC--eEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCC
Confidence 4555655432 55 788999999999999999999999999999999999999999998 457889999999999998
Q ss_pred CCCCcHHHHHHHHH----HHccCCC----CCC----ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHh
Q 048063 89 NKLTDQKVINYIQQ----AIGTTGE----IPS----SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALAD 156 (484)
Q Consensus 89 ~~~~~~~~~~~L~~----~L~~~~~----~~~----~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~ 156 (484)
.++. .++++.|++ +|.+... .+. .....+|++|. |+|+.+..+|+|+|.+.||||||++|+++|.+
T Consensus 754 ~~~~-~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~-~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~ 831 (884)
T PRK05007 754 SPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVS-FLPTHTDRRSYMELIALDQPGLLARVGKIFAD 831 (884)
T ss_pred CCCC-HHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEE-EccCCCCCeEEEEEEeCCchHHHHHHHHHHHH
Confidence 8774 345555554 4544311 000 00115688898 99999999999999999999999999999999
Q ss_pred CCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063 157 LHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA 207 (484)
Q Consensus 157 ~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g 207 (484)
+|++|++|+|+|.|++++|+|||++. .|.+++ +++.+.|+++|.++|..
T Consensus 832 ~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 832 LGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred CCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998 799997 67889999999999954
No 3
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.8e-27 Score=268.79 Aligned_cols=191 Identities=19% Similarity=0.333 Sum_probs=161.4
Q ss_pred hhhccccccc---CCceEEEEecCCC---CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEe
Q 048063 12 EFDTLPERIY---GPTCRVCIDNESM---EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVK 84 (484)
Q Consensus 12 ~~~~l~~~~~---~p~~~V~i~~~~~---~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~ 84 (484)
||.+++.+.. .| .|.+...+. .++++|+|+++||||||+++|++|+.+|+||++|+| ||.+|+++|+|+|+
T Consensus 675 ~h~~~~~~~~~~~~~--~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~ 752 (895)
T PRK00275 675 WHTEAILQHPDDGGP--LVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVL 752 (895)
T ss_pred HHHHHHHhcccCCCC--eEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEe
Confidence 6777776533 45 566777665 589999999999999999999999999999999998 67999999999999
Q ss_pred eCCCCCCC-cHHHHHHHHHH----HccCCC------------CCCccccccccceeeecCCCCCCeEEEEEEecCCCchH
Q 048063 85 DEHGNKLT-DQKVINYIQQA----IGTTGE------------IPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLF 147 (484)
Q Consensus 85 d~~g~~~~-~~~~~~~L~~~----L~~~~~------------~~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL 147 (484)
+++|.++. ++++++.|++. |.+... .++| .+++.|. |+++.+.++|+|+|+++||||||
T Consensus 753 d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~---~~~~~V~-i~~~~~~~~T~i~V~a~DrpGLL 828 (895)
T PRK00275 753 DDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHF---AFPTQVT-ISNDAQRPVTVLEIIAPDRPGLL 828 (895)
T ss_pred CCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCC---CCCCEEE-EEECCCCCeEEEEEEECCCCCHH
Confidence 99988743 34566665554 443321 0122 4578888 99999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcccc
Q 048063 148 SEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA 209 (484)
Q Consensus 148 ~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g~~ 209 (484)
++|+++|+.+|+||++|+|+|.++++.|+|||++. .|.++.+++++++|+++|.++|.+..
T Consensus 829 a~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~~~ 889 (895)
T PRK00275 829 ARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDARN 889 (895)
T ss_pred HHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999998 79999888899999999999997653
No 4
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.7e-26 Score=259.40 Aligned_cols=190 Identities=17% Similarity=0.227 Sum_probs=153.0
Q ss_pred hhhccccccc--CCceEEEEec-CCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCC
Q 048063 12 EFDTLPERIY--GPTCRVCIDN-ESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEH 87 (484)
Q Consensus 12 ~~~~l~~~~~--~p~~~V~i~~-~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~ 87 (484)
||.+++.+.. .| .|.+.. .+..+.++|+|+++||||||++||++|+.+|+||++|+| +|.+|+++|+|+|++++
T Consensus 664 ~h~~~~~~~~~~~~--~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~ 741 (869)
T PRK04374 664 WQAASLIEVEIGQT--LVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD 741 (869)
T ss_pred HHHHHHHhcCCCCC--eEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC
Confidence 4666655433 45 555544 677789999999999999999999999999999999998 55999999999999988
Q ss_pred CCCCCcH-HHHHHHHHHHccCCC-----CCC--c--cccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhC
Q 048063 88 GNKLTDQ-KVINYIQQAIGTTGE-----IPS--S--AVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADL 157 (484)
Q Consensus 88 g~~~~~~-~~~~~L~~~L~~~~~-----~~~--~--~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~ 157 (484)
|.....+ ...+.|+++|.+... .+. . ....+||+|. |+++.+.++|+|+|.+.||||||++|+++|+.+
T Consensus 742 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~ 820 (869)
T PRK04374 742 TYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVE-FSESAGGRRTRISLVAPDRPGLLADVAHVLRMQ 820 (869)
T ss_pred CCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEE-EeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHC
Confidence 7632111 123445566665321 000 0 0015688898 999999999999999999999999999999999
Q ss_pred CCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 158 HCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 158 glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
|+||++|+|+|.++++.|+|||++. +|.++.++++ +.|+++|.++|.
T Consensus 821 ~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 821 HLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred CCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHhc
Confidence 9999999999999999999999998 7888876666 999999999884
No 5
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=7.4e-26 Score=256.39 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=165.2
Q ss_pred cccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHH
Q 048063 118 TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLAT 196 (484)
Q Consensus 118 ~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~ 196 (484)
.++.|. ++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|+|++. +|.++. ++++++
T Consensus 663 ~~~~V~-i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~ 739 (854)
T PRK01759 663 GDLLVK-ISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQ 739 (854)
T ss_pred CCCEEE-EEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHH
Confidence 355666 88899999999999999999999999999999999999999998 78899999999998 788885 679999
Q ss_pred HHHHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 048063 197 IEEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEG 276 (484)
Q Consensus 197 l~~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (484)
|++.|.++|.++... .. . ++.. +. . ..+
T Consensus 740 l~~~L~~aL~~~~~~---~~---------~-------------~~~~------~~----~-----------------~~~ 767 (854)
T PRK01759 740 LEQALTKALNTNKLK---KL---------N-------------LEEN------HK----L-----------------QHF 767 (854)
T ss_pred HHHHHHHHHcCCCCc---ch---------h-------------cccc------cc----c-----------------cCC
Confidence 999999999886432 00 0 0000 00 0 136
Q ss_pred CcceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHH
Q 048063 277 MRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVI 356 (484)
Q Consensus 277 ~~~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~ 356 (484)
..+|.|.|+|..+..+|+|.|.++|||||+|+|+++|.++|++|..|+|+|.++.+.|+|||.+.+|.+++++.+ ++|+
T Consensus 768 ~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~ 846 (854)
T PRK01759 768 HVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALK 846 (854)
T ss_pred CCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHH
Confidence 778999999999999999999999999999999999999999999999999999999999999999999988766 9999
Q ss_pred HHHHHHH
Q 048063 357 KCLEAAI 363 (484)
Q Consensus 357 ~~L~~~l 363 (484)
+.|.++|
T Consensus 847 ~~L~~~l 853 (854)
T PRK01759 847 SRLLSNL 853 (854)
T ss_pred HHHHHHh
Confidence 9988765
No 6
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.1e-25 Score=254.89 Aligned_cols=187 Identities=14% Similarity=0.195 Sum_probs=152.5
Q ss_pred hhhccccccc---CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCC
Q 048063 12 EFDTLPERIY---GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEH 87 (484)
Q Consensus 12 ~~~~l~~~~~---~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~ 87 (484)
||.+++.+.. .| .|.+...+..+.++|+|+++||||||++||++|+.+|+||++|+| +|.+|+++|+|+|++++
T Consensus 652 ~h~~~~~~~~~~~~~--~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 652 WHTRHLYRHVDTDTP--IVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred HHHHHHHhcccCCCC--eEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 5666766532 45 677888888899999999999999999999999999999999998 66999999999999987
Q ss_pred CCCCCcHHHHHHHHH----HHccCCC-----CCC----ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHH
Q 048063 88 GNKLTDQKVINYIQQ----AIGTTGE-----IPS----SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAAL 154 (484)
Q Consensus 88 g~~~~~~~~~~~L~~----~L~~~~~-----~~~----~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL 154 (484)
|. ...+++++.|++ +|.+... .++ .....+++.|. |+++.+.++|+|+|.++||||||++|+++|
T Consensus 730 ~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L 807 (856)
T PRK03059 730 ED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVD-LRPDERGQYYILSVSANDRPGLLYAIARVL 807 (856)
T ss_pred CC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEE-EEEcCCCCEEEEEEEeCCcchHHHHHHHHH
Confidence 77 444456665554 5544321 011 00014567777 899888999999999999999999999999
Q ss_pred HhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 155 ADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 155 ~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
+.+|+||++|+|+|.++++.|+|||++. ++.+++++++|+++|.++|.
T Consensus 808 ~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 808 AEHRVSVHTAKINTLGERVEDTFLIDGS----GLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHCCCeEEEEEEeecCCEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999644 24567899999999998874
No 7
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=253.37 Aligned_cols=191 Identities=19% Similarity=0.205 Sum_probs=164.8
Q ss_pred ccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eeEEEEEEEeCCCCCCCCChhHHHHH
Q 048063 119 YTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND-RLACVAYVSDQSTDTPIDDPGRLATI 197 (484)
Q Consensus 119 ~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~-~~~dvF~V~~~~~g~~i~d~~~~~~l 197 (484)
++.|. ++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++ .+.|+|+|++. +|.++. ++++++|
T Consensus 688 ~p~V~-i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~-~~~~~~I 764 (884)
T PRK05007 688 KPLVL-LSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLS-QDRHQVI 764 (884)
T ss_pred CCeEE-EEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCC-HHHHHHH
Confidence 55666 88889999999999999999999999999999999999999999655 78899999998 788884 6799999
Q ss_pred HHHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 048063 198 EEYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGM 277 (484)
Q Consensus 198 ~~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (484)
++.|.++|.++... .. . . |+.. + . . ..+.
T Consensus 765 ~~~L~~aL~~~~~~---~~-~------~--------------~~~~------~---~-~-----------------~~~~ 793 (884)
T PRK05007 765 RKALEQALTQSSPQ---PP-K------P--------------RRLP------A---K-L-----------------RHFN 793 (884)
T ss_pred HHHHHHHHcCCCCC---cc-c------c--------------cccc------c---c-c-----------------CCCC
Confidence 99999999886432 11 1 0 1110 0 0 0 1367
Q ss_pred cceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHH
Q 048063 278 RRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIK 357 (484)
Q Consensus 278 ~~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~ 357 (484)
.+|.|.|+|..+..+|+|+|.++|||||+|+|+++|.++|++|..|+|+|.++.+.|+|||.+.+|.+++ +++.++|++
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~ 872 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQ 872 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998 568899999
Q ss_pred HHHHHHh
Q 048063 358 CLEAAIE 364 (484)
Q Consensus 358 ~L~~~l~ 364 (484)
.|.+++.
T Consensus 873 ~L~~~l~ 879 (884)
T PRK05007 873 RLTEALN 879 (884)
T ss_pred HHHHHHh
Confidence 9888763
No 8
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=1.7e-25 Score=254.54 Aligned_cols=189 Identities=19% Similarity=0.262 Sum_probs=159.6
Q ss_pred hhhccccccc---CCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEeeCC
Q 048063 12 EFDTLPERIY---GPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS-SDAGWFMDVFHVKDEH 87 (484)
Q Consensus 12 ~~~~l~~~~~---~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It-t~~g~~~d~F~V~d~~ 87 (484)
||.+++.+.. .| .|.+++....+.++|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++.+
T Consensus 642 ~h~~~~~~~~~~~~~--~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 642 WHAESLRRALSSGGP--LALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred HHHHHHHhcccCCCC--EEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 6667766533 46 7888887668999999999999999999999999999999999995 7999999999999999
Q ss_pred CCCCCcHHHHHHHHH----HHccCCC------CCC-----ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHH
Q 048063 88 GNKLTDQKVINYIQQ----AIGTTGE------IPS-----SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISA 152 (484)
Q Consensus 88 g~~~~~~~~~~~L~~----~L~~~~~------~~~-----~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~ 152 (484)
|.++.+++.++.|++ +|.+... .+. .....++++|. |+|+.+..+|+|+|.+.||||||++|++
T Consensus 720 g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~d~~~s~~~t~~~v~~~DrpGll~~i~~ 798 (850)
T TIGR01693 720 GSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVT-ILNTASRKATIMEVRALDRPGLLARVGR 798 (850)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEE-EccCCCCCeEEEEEEECCccHHHHHHHH
Confidence 988776666666555 4444211 000 00114678888 9999999999999999999999999999
Q ss_pred HHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 153 ALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 153 vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
+|+++|+||++|+|.|.++++.|+|||++. .|.|+.+ ++++.|+++|.++|
T Consensus 799 ~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 799 TLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 7999986 78899999998876
No 9
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=3e-25 Score=254.23 Aligned_cols=196 Identities=21% Similarity=0.299 Sum_probs=163.7
Q ss_pred hhhcccccccC--CceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCeEEEEEEEeeCCC
Q 048063 12 EFDTLPERIYG--PTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS-SDAGWFMDVFHVKDEHG 88 (484)
Q Consensus 12 ~~~~l~~~~~~--p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It-t~~g~~~d~F~V~d~~g 88 (484)
||.+++.+... .+..|.+.+.+..+.++|+|+++||||||++||++|+.+|+||++|+|+ +.+|+++|+|+|++++|
T Consensus 705 ~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g 784 (931)
T PRK05092 705 RHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFG 784 (931)
T ss_pred HHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCC
Confidence 57777765431 1127778888888999999999999999999999999999999999985 48999999999999888
Q ss_pred CCCCcHHHHHHHHHHHcc----CCC----C-CC------ccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHH
Q 048063 89 NKLTDQKVINYIQQAIGT----TGE----I-PS------SAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAA 153 (484)
Q Consensus 89 ~~~~~~~~~~~L~~~L~~----~~~----~-~~------~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~v 153 (484)
.+..+++.++.|++.|.. ... . ++ .....++|.|. |+|+.+..+|+|+|.+.||||||++|+++
T Consensus 785 ~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~-~~~~~s~~~t~i~I~~~DrpGLl~~I~~~ 863 (931)
T PRK05092 785 RDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVT-IDNEASNRFTVIEVNGRDRPGLLYDLTRA 863 (931)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEE-EeeCCCCCeEEEEEEECCcCcHHHHHHHH
Confidence 776666677766665533 211 0 00 00114578888 99999999999999999999999999999
Q ss_pred HHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcccc
Q 048063 154 LADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRATA 209 (484)
Q Consensus 154 L~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g~~ 209 (484)
|+++|+||++|+|.|.++++.|+|||++. +|.++.+++++++|+++|.++|.++.
T Consensus 864 l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~~~ 918 (931)
T PRK05092 864 LSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAEGE 918 (931)
T ss_pred HHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999998 79999888899999999999998754
No 10
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=6.6e-25 Score=249.53 Aligned_cols=183 Identities=22% Similarity=0.289 Sum_probs=158.1
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCC-ChhHHHHHHHHHHHHhccc
Q 048063 131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPID-DPGRLATIEEYITTVLRAT 208 (484)
Q Consensus 131 ~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~-d~~~~~~l~~~L~~~L~g~ 208 (484)
.+.++|.|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|+|++. +|.++. +++++++|++.|.++|.|+
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999999999999999988 45677899999998 688854 4589999999999999987
Q ss_pred ccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeccC
Q 048063 209 AERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIESCE 288 (484)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~n~~ 288 (484)
... ...+ + .+..++. ..+..+|.|.++|..
T Consensus 781 ~~~---~~~~------~----------~~~~~~~-------------------------------~~~~~~~~V~i~~~~ 810 (895)
T PRK00275 781 DDY---PTII------Q----------RRVPRQL-------------------------------KHFAFPTQVTISNDA 810 (895)
T ss_pred Ccc---chhh------h----------hhhhhhc-------------------------------cCCCCCCEEEEEECC
Confidence 643 2222 1 0111111 136677999999999
Q ss_pred CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh
Q 048063 289 EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE 364 (484)
Q Consensus 289 ~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~ 364 (484)
+.++|+|+|+++||||||++|+++|.++|+||.+|+|+|.+++++|+|||.+.+|.++.++.+.++|++.|.+.|.
T Consensus 811 ~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~ 886 (895)
T PRK00275 811 QRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLD 886 (895)
T ss_pred CCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888999999999999999999888899999999999884
No 11
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-25 Score=243.23 Aligned_cols=164 Identities=25% Similarity=0.383 Sum_probs=147.8
Q ss_pred CcceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEE-EecCCeEEEEEEEEccCCCCCCChhHHHHH
Q 048063 277 MRRTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIRHIDGYALNTEGEKERV 355 (484)
Q Consensus 277 ~~~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i-~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l 355 (484)
..+|.|.+++....+.++|+||++|+|.||+.++.++...|+||++|+| +|.+||++|+|+|.+++|.++. +.+...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 4679999999999999999999999999999999999999999999999 7788999999999999999988 6688888
Q ss_pred HHHHHHHHh---------hccC----------C----------ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec
Q 048063 356 IKCLEAAIE---------RRVC----------E----------GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATK 406 (484)
Q Consensus 356 ~~~L~~~l~---------rr~~----------~----------~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~ 406 (484)
+..|.+.+. ++.+ + .|+|||+|.||||||++++++|.+++++|++|||+|+
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 888888872 1111 1 6999999999999999999999999999999999999
Q ss_pred CCeeeeEEEEEcCCCCCCChHHHHHHHHHhCCCceE
Q 048063 407 GEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDL 442 (484)
Q Consensus 407 g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~~~~ 442 (484)
||+|+|+|||++..|.+++.+.++.+.+.| .++++
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~l-l~al~ 862 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRL-LEALL 862 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHH-HHHhc
Confidence 999999999999999999998888888888 55443
No 12
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2e-25 Score=240.99 Aligned_cols=188 Identities=18% Similarity=0.221 Sum_probs=158.0
Q ss_pred hhhhcccccc--cCCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCC
Q 048063 11 PEFDTLPERI--YGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEH 87 (484)
Q Consensus 11 ~~~~~l~~~~--~~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~ 87 (484)
-||++++.+. .+| .|.++..+..+.++|+|+++|+|.||+.+|+.+...|+||++|+| +|.+|+++|+|+|++++
T Consensus 658 awH~~~l~~~~~~~~--Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~ 735 (867)
T COG2844 658 AWHARHLVRHDLGKP--LVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD 735 (867)
T ss_pred hHHHHHHHhhhccCc--ceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC
Confidence 4888888876 367 888888888899999999999999999999999999999999998 77999999999999999
Q ss_pred CCCCCcHHHHHHHHH----HHccC-CC----------CCCccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHH
Q 048063 88 GNKLTDQKVINYIQQ----AIGTT-GE----------IPSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISA 152 (484)
Q Consensus 88 g~~~~~~~~~~~L~~----~L~~~-~~----------~~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~ 152 (484)
|.++.. .+...+++ ++... .. .++| +++|+|. |.|..+...|+|+|.+.||||||+++++
T Consensus 736 g~~~~~-dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f---~i~p~v~-i~~t~~~~~t~lEv~alDRpGLLa~v~~ 810 (867)
T COG2844 736 GFPVEE-DRRAALRGELIEALLSGKAQPPRRRRIPRKLRHF---PIPPRVT-ILPTASNDKTVLEVRALDRPGLLAALAG 810 (867)
T ss_pred CCccch-hHHHHHHHHHHHHHhcCCCCCccccccCccccee---ccCCcee-eccccCCCceEEEEEeCCcccHHHHHHH
Confidence 987763 34433333 33221 10 1244 6789999 9999999999999999999999999999
Q ss_pred HHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063 153 ALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA 207 (484)
Q Consensus 153 vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g 207 (484)
+|++++++|++|+|.|.|+++.|+|||++. .|.++. ++..+.+.+.|.+++..
T Consensus 811 v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~-~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 811 VFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALN-AELRQSLLQRLLEALLP 863 (867)
T ss_pred HHHhcccceeeeeeccccccceeEEEEecc-ccccCC-HHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 798885 45556666666666653
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=6.8e-25 Score=246.26 Aligned_cols=175 Identities=19% Similarity=0.236 Sum_probs=146.6
Q ss_pred cCCceEEEEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHH
Q 048063 21 YGPTCRVCIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYI 100 (484)
Q Consensus 21 ~~p~~~V~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L 100 (484)
.+| .|.+.... .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|++++|.....+...+.|
T Consensus 586 ~~~--~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L 662 (774)
T PRK03381 586 GGV--HVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDL 662 (774)
T ss_pred CCC--EEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHH
Confidence 456 78888878 899999999999999999999999999999999999889999999999999888754334455667
Q ss_pred HHHHccCCC------CCC-----cc--ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE
Q 048063 101 QQAIGTTGE------IPS-----SA--VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW 167 (484)
Q Consensus 101 ~~~L~~~~~------~~~-----~~--~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~ 167 (484)
+++|.+... .+. .. ....++.|. ++++.+.++|+|+|.++||||||++|+++|+.+|+||++|+|+
T Consensus 663 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~ 741 (774)
T PRK03381 663 RRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVL-WLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVA 741 (774)
T ss_pred HHHHcCCCchhhhhhcccccccccccccCCCCcEEE-EEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEe
Confidence 777776411 000 00 014566777 8998888999999999999999999999999999999999999
Q ss_pred ecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 168 SHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 168 T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
|.++++.|+|||++. +|.+++++ .+.|+++|.
T Consensus 742 T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 742 TLGADVVDVFYVTGA-AGGPLADA--RAAVEQAVL 773 (774)
T ss_pred ecCCeEEEEEEEECC-CCCcCchH--HHHHHHHhh
Confidence 999999999999998 79999764 677777664
No 14
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.92 E-value=5.6e-24 Score=242.18 Aligned_cols=193 Identities=22% Similarity=0.304 Sum_probs=164.0
Q ss_pred cceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE-ecCCeeEEEEEEEeCCCCCCCCChhHHHHHH
Q 048063 120 TNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW-SHNDRLACVAYVSDQSTDTPIDDPGRLATIE 198 (484)
Q Consensus 120 ~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~-T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~ 198 (484)
+.|. +++....+.|+|+|+++||||||++|+++|+.+|+||++|+|+ |.++.+.|+|||++. .|.++.+++++++|+
T Consensus 656 ~~v~-~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 656 PLAL-IDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELL 733 (850)
T ss_pred CEEE-EeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHH
Confidence 3454 7776678999999999999999999999999999999999999 578899999999998 788888778899999
Q ss_pred HHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048063 199 EYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMR 278 (484)
Q Consensus 199 ~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (484)
+.|.++|.+.... ...+ ..+ .. ..|+. ..+..
T Consensus 734 ~~L~~~L~~~~~~---~~~~------~~~-------~~-~~~~~-------------------------------~~~~~ 765 (850)
T TIGR01693 734 QGLVDVLAGLAKD---PDTI------SAR-------RA-RRRRL-------------------------------QHFAV 765 (850)
T ss_pred HHHHHHHcCCCcc---cccc------ccc-------cC-Ccccc-------------------------------cCCCC
Confidence 9999999886432 1111 000 00 00000 13677
Q ss_pred ceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHH
Q 048063 279 RTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKC 358 (484)
Q Consensus 279 ~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~ 358 (484)
+|.|.|+|..+..+|+|.|.|+|||||+++|+++|.++|++|.+|+|+|.++.+.|+|||.+..|.|+++ ++.+.|++.
T Consensus 766 ~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~ 844 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEV 844 (850)
T ss_pred CCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999887 688999999
Q ss_pred HHHHH
Q 048063 359 LEAAI 363 (484)
Q Consensus 359 L~~~l 363 (484)
|.+++
T Consensus 845 L~~~l 849 (850)
T TIGR01693 845 LAASV 849 (850)
T ss_pred HHHHh
Confidence 88765
No 15
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=3.3e-23 Score=237.52 Aligned_cols=195 Identities=23% Similarity=0.378 Sum_probs=166.6
Q ss_pred cceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHH
Q 048063 120 TNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIE 198 (484)
Q Consensus 120 ~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~ 198 (484)
+.|. +.+....+.++|+|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|+|++. .|.++.+++++++|+
T Consensus 720 ~~v~-~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 720 LATE-VRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLA 797 (931)
T ss_pred cEEE-EEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHH
Confidence 4454 77777789999999999999999999999999999999999998 67778899999998 688877788999999
Q ss_pred HHHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048063 199 EYITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMR 278 (484)
Q Consensus 199 ~~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (484)
+.|.+++.|+... ...+ .. |+... + . ...+..
T Consensus 798 ~~L~~~l~~~~~~---~~~~------~~-------------r~~~~-----~---~------------------~~~~~~ 829 (931)
T PRK05092 798 KAIEDALSGEVRL---PEAL------AK-------------RTKPK-----K---R------------------ARAFHV 829 (931)
T ss_pred HHHHHHHcCCCCC---cccc------cc-------------ccCcc-----c---c------------------ccCCCC
Confidence 9999999887543 2222 11 00000 0 0 013677
Q ss_pred ceEEEEeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHH
Q 048063 279 RTAVYIESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKC 358 (484)
Q Consensus 279 ~p~V~v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~ 358 (484)
+|.|.|+|..+.++++|+|+++||||||++|+++|.++|+||.+|+|.|.++++.|+|+|.+.+|.++.++++.++|++.
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~ 909 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRA 909 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHh
Q 048063 359 LEAAIE 364 (484)
Q Consensus 359 L~~~l~ 364 (484)
|.+.|.
T Consensus 910 L~~~L~ 915 (931)
T PRK05092 910 LLAALA 915 (931)
T ss_pred HHHHhc
Confidence 999884
No 16
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=3.3e-23 Score=234.38 Aligned_cols=181 Identities=20% Similarity=0.200 Sum_probs=153.6
Q ss_pred CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
.+..+.++|.|+++||||||++||++|+.+|+||++|+|+| .++.+.|+|+|+++ .|.+ ..++.+|++.|.++|+
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence 56678999999999999999999999999999999999998 56778899999998 5654 3568899999999999
Q ss_pred ccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEec
Q 048063 207 ATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYIES 286 (484)
Q Consensus 207 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~n 286 (484)
|+... .. + .. |+.. +. . ..+..+|.|.++|
T Consensus 761 ~~~~~---~~-~------~~-------------~~~~------~~----~-----------------~~~~~~~~V~~~~ 790 (869)
T PRK04374 761 GDLQK---VR-P------AR-------------RAVP------RQ----L-----------------RHFRFAPRVEFSE 790 (869)
T ss_pred CCCCc---cc-c------cc-------------ccCc------cc----c-----------------cCCCCCCeEEEee
Confidence 87532 11 2 11 1100 00 0 1477889999999
Q ss_pred cCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH
Q 048063 287 CEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI 363 (484)
Q Consensus 287 ~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l 363 (484)
..+.++|+|+|+++||||||++|+++|+++|+||..|+|+|.++++.|+|||.+.+|.++.++++ ++|++.|.+.|
T Consensus 791 ~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l 866 (869)
T PRK04374 791 SAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACL 866 (869)
T ss_pred cCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998877666 99999988875
No 17
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=5.3e-23 Score=233.07 Aligned_cols=184 Identities=20% Similarity=0.227 Sum_probs=152.9
Q ss_pred ecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 125 FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 125 ~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
+.+....+.+.|.|+++||||||++||++|+.+|+||++|+|+| .++.+.|+|+|.++ .|. ..+++++++|++.|.+
T Consensus 670 ~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~ 747 (856)
T PRK03059 670 ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAE 747 (856)
T ss_pred EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHH
Confidence 55666778999999999999999999999999999999999987 56778899999997 555 4457899999999999
Q ss_pred HhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEE
Q 048063 204 VLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVY 283 (484)
Q Consensus 204 ~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~ 283 (484)
+|.|+... ...+ . ||.. +. . ..+..+|.|.
T Consensus 748 ~l~~~~~~---~~~~------~--------------~~~~------~~----~-----------------~~~~~~~~V~ 777 (856)
T PRK03059 748 RLAEQAPL---PEPS------K--------------GRLS------RQ----V-----------------KHFPITPRVD 777 (856)
T ss_pred HHcCCCCc---chhh------c--------------cccc------cc----c-----------------cCCCCCceEE
Confidence 99987543 1111 0 1100 00 0 1367788999
Q ss_pred EeccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH
Q 048063 284 IESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI 363 (484)
Q Consensus 284 v~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l 363 (484)
++|..+.++|+|+|+++||||||++|+++|+++|+||..|+|+|.++++.|+|||. +.+..++++.++|++.|.+.+
T Consensus 778 ~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 778 LRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred EEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988899999999994 344556778899999988765
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=1.3e-22 Score=228.02 Aligned_cols=181 Identities=17% Similarity=0.201 Sum_probs=148.8
Q ss_pred ecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063 125 FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV 204 (484)
Q Consensus 125 ~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~ 204 (484)
+.+.. .+.++|.|+++||||||++|+++|+.+|+||++|+|+|.++.+.|+|+|+++ .|.+. .++++++.|.++
T Consensus 592 ~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~ 665 (774)
T PRK03381 592 IAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRA 665 (774)
T ss_pred EeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHH
Confidence 55666 8999999999999999999999999999999999999988889999999998 57543 368999999999
Q ss_pred hcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 048063 205 LRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRRTAVYI 284 (484)
Q Consensus 205 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~v 284 (484)
|.|+... ...+ .. |+..+ ..+ +. ..+..+|.|.+
T Consensus 666 L~~~~~~---~~~~------~~-------------~~~~~---~~~--------------~~-------~~~~~~~~v~~ 699 (774)
T PRK03381 666 LDGDLDV---LARL------AA-------------REAAA---AAV--------------PV-------RRPAAPPRVLW 699 (774)
T ss_pred HcCCCch---hhhh------hc-------------ccccc---ccc--------------cc-------ccCCCCcEEEE
Confidence 9985432 1111 00 00000 000 00 13677889999
Q ss_pred eccCCCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHH
Q 048063 285 ESCEEKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCL 359 (484)
Q Consensus 285 ~n~~~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L 359 (484)
+|..+.++++|+|+++||||||++|+++|+++|+||.+|+|+|.+++++|+|||.+.+|.++.++ .+.|++.|
T Consensus 700 ~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 700 LDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred EECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988765 67777665
No 19
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.76 E-value=3.3e-18 Score=135.66 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=63.9
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCCh-HHHHHHHHHh
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDM-DFVESMKKEI 436 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~-~~~~~l~~~L 436 (484)
.|+|||.+.||||||++|+++|+++|++|++|||+|+|++++|+|||++.+|.++.+ +.++.|+++|
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999999999999975 6789999999
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=7.9e-18 Score=134.46 Aligned_cols=73 Identities=14% Similarity=0.285 Sum_probs=70.4
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
+|+|+|.++||||||++|+++|+++|++|++|+|.|.|+++.|+|||++. +|.|+.++++.++|+++|.+++.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999 89999999999999999999885
No 21
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.73 E-value=3.1e-17 Score=130.10 Aligned_cols=69 Identities=26% Similarity=0.320 Sum_probs=65.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++. .|.|+.+++++++|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999998 7999999888899988774
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.73 E-value=3.9e-17 Score=130.49 Aligned_cols=75 Identities=72% Similarity=1.236 Sum_probs=72.3
Q ss_pred eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhc
Q 048063 292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERR 366 (484)
Q Consensus 292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr 366 (484)
+|+|+|.|+|||||||+++++|+++|++|.+|+|+|.++.+.|+|||.+.+|.++.++.+.++|+++|.++++||
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998764
No 23
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=1.1e-16 Score=127.87 Aligned_cols=65 Identities=18% Similarity=0.340 Sum_probs=60.4
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEee--ecCCeeeeEEEEEcCCCCCCCh-HHHHHHHHHh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVA--TKGEKSVNAFYLRDISGNEVDM-DFVESMKKEI 436 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~--T~g~~a~d~F~v~~~~g~~l~~-~~~~~l~~~L 436 (484)
|+|||.|.|||||||+|+++|+++|++|++|||+ |+|++++|+||| +.+|.++++ ++++.|+++|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L 68 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARL 68 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHH
Confidence 5799999999999999999999999999999999 999999999999 888988865 5778888887
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=2e-16 Score=126.34 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=67.7
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE--ecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW--SHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA 207 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~--T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g 207 (484)
|+|+|.++|||||||+|+++|+++|++|++|+|. |.|++++|+||| +. .|.++.++++.+.|+++|.+++..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999 999999999999 66 688999999999999999998853
No 25
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=2.4e-15 Score=120.57 Aligned_cols=73 Identities=68% Similarity=1.126 Sum_probs=68.5
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCC-CCCCCChhHHHHHHHHHHHHhcc
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQST-DTPIDDPGRLATIEEYITTVLRA 207 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~-g~~i~d~~~~~~l~~~L~~~L~g 207 (484)
|+|+|.++||||||++|+++|+.+|+||++|+++|.++.+.|+|+|+++ . |.++.+++++++|++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999997 6 77787888999999999999875
No 26
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.62 E-value=7.2e-15 Score=138.39 Aligned_cols=144 Identities=11% Similarity=0.156 Sum_probs=106.5
Q ss_pred CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH--h--
Q 048063 289 EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI--E-- 364 (484)
Q Consensus 289 ~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l--~-- 364 (484)
+..+++|+++|+||||+++++++.|+++||||.+++++..+|+..-++.| .+. +....+++.-...+.+.+ .
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~-~~~~~~le~~L~~l~~~~~L~i~ 80 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGS-WNAITLIESTLPLKGAELDLLIV 80 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCC-hhHHHHHHHHHHhhhhhcCeEEE
Confidence 45789999999999999999999999999999999999988854333333 443 233334444444444332 1
Q ss_pred -hcc-C-------CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC--eeeeEEEEE----cCCCCCCCh--H
Q 048063 365 -RRV-C-------EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE--KSVNAFYLR----DISGNEVDM--D 427 (484)
Q Consensus 365 -rr~-~-------~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~--~a~d~F~v~----~~~g~~l~~--~ 427 (484)
++. . .++.++|.+.|||||+++||++|+++||||.+.+..|+++ ...+.|.+. -+.+..+.. +
T Consensus 81 v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~ 160 (190)
T PRK11589 81 MKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQ 160 (190)
T ss_pred EEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHH
Confidence 121 1 1489999999999999999999999999999999999996 577777654 334444433 3
Q ss_pred HHHHHHHHh
Q 048063 428 FVESMKKEI 436 (484)
Q Consensus 428 ~~~~l~~~L 436 (484)
..+.++.+|
T Consensus 161 ~l~~l~~eL 169 (190)
T PRK11589 161 AFKALCTEL 169 (190)
T ss_pred HHHHHHHHh
Confidence 567888888
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.1e-14 Score=116.29 Aligned_cols=72 Identities=33% Similarity=0.475 Sum_probs=65.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
.+.|+|+++||||||++|+++|+.+|+||++|+|+|. ++.+.|+|+|++. .+.++.+++++++|++.|.++|
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999997 6889999999998 7888877889999999998764
No 28
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.55 E-value=7.3e-14 Score=131.59 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=110.2
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063 35 EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA 114 (484)
Q Consensus 35 ~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 114 (484)
..+.+|+++++|||||.++++++|+++||||.+++.+..+|.|.-++.|. +. +..++.|+..|........+.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~----~~~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GS----WNAITLIESTLPLKGAELDLL 78 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CC----hhHHHHHHHHHHhhhhhcCeE
Confidence 36789999999999999999999999999999999999999988788874 22 346778888776543100110
Q ss_pred ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC--eeEEEEEEEeCCCCCCCCChh
Q 048063 115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND--RLACVAYVSDQSTDTPIDDPG 192 (484)
Q Consensus 115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~--~~~dvF~V~~~~~g~~i~d~~ 192 (484)
..-..+.- -.....+..+.++|.+.|||||+++++++|+++|+||.+.+..|++. ...+.|...-. -.-|- ..
T Consensus 79 i~v~~~~~--~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~-v~lP~--~~ 153 (190)
T PRK11589 79 IVMKRTTA--RPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQIT-AHSPA--SQ 153 (190)
T ss_pred EEEEeccc--cccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEE-EEcCC--CC
Confidence 00000000 00011222589999999999999999999999999999999888764 33344544332 12121 12
Q ss_pred HHHHHHHHHHHHh
Q 048063 193 RLATIEEYITTVL 205 (484)
Q Consensus 193 ~~~~l~~~L~~~L 205 (484)
..+.|+++|.+..
T Consensus 154 ~~~~L~~~l~~l~ 166 (190)
T PRK11589 154 DAANIEQAFKALC 166 (190)
T ss_pred CHHHHHHHHHHHH
Confidence 3577888877644
No 29
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=5.3e-14 Score=113.40 Aligned_cols=71 Identities=18% Similarity=0.374 Sum_probs=64.3
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhcc
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRA 207 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g 207 (484)
+++|+++||||||++|+++|+.+|+||++|+|+| .++.+.|+|||++. .+. ..+++++++++++|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 88999999999997 565 45678999999999998854
No 30
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.48 E-value=4.8e-14 Score=127.57 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=108.0
Q ss_pred CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH----
Q 048063 289 EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI---- 363 (484)
Q Consensus 289 ~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l---- 363 (484)
++.|++|+++|+||||+...+++...++||||.++|+++.++ ++ .++...|. |+...+++.-.+.|.+..
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a----~i~lisgs-~dav~~le~~l~~l~~~~~L~v 76 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFA----GIMLISGS-WDAVTLLEATLPLLGAELDLLV 76 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhccee----EEEEEeeC-HHHHHHHHHHhhcccccCCeEE
Confidence 356799999999999999999999999999999999988887 55 45555665 444445555555555432
Q ss_pred --hhccC-------CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe--eeeEEEEEcCCCCCCCh------
Q 048063 364 --ERRVC-------EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK--SVNAFYLRDISGNEVDM------ 426 (484)
Q Consensus 364 --~rr~~-------~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~--a~d~F~v~~~~g~~l~~------ 426 (484)
.|..+ .+|.++|.+.|||||+.+||++|.++||+|++....|+.+. ....|.+.=.-+-|.+.
T Consensus 77 ~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~ 156 (176)
T COG2716 77 VMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALR 156 (176)
T ss_pred EEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHH
Confidence 12211 27999999999999999999999999999999999999755 56688874333334432
Q ss_pred HHHHHHHHHh
Q 048063 427 DFVESMKKEI 436 (484)
Q Consensus 427 ~~~~~l~~~L 436 (484)
++.++++.+|
T Consensus 157 ~~f~al~~~L 166 (176)
T COG2716 157 DAFEALCDEL 166 (176)
T ss_pred HHHHHHHHhh
Confidence 2446677766
No 31
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.48 E-value=3.2e-13 Score=108.27 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=66.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccC-CCCCCChhHHHHHHHHHHHHH
Q 048063 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHID-GYALNTEGEKERVIKCLEAAI 363 (484)
Q Consensus 293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~-g~~~~~~~~~e~l~~~L~~~l 363 (484)
|+|+|+++||||||++++++|+++||||.+|+|+|.+++++|+|+|.+.+ |.++.++.+.+++++.|.+.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999988899999999999988 888888889999999998865
No 32
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.47 E-value=3.9e-13 Score=107.41 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=64.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEec-CCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH
Q 048063 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCH-GDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA 362 (484)
Q Consensus 293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~-~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~ 362 (484)
+.|+|+++||||||++++++|+.+|+||.+|+|.|. +|+++|+|+|.+.+|.++.++++.+++++.|.+.
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999655 6899999999999999888888889999988765
No 33
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.44 E-value=8.5e-13 Score=106.38 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=62.6
Q ss_pred EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEE-ecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH
Q 048063 294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIG-CHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI 363 (484)
Q Consensus 294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~-t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l 363 (484)
.++|+++||||||++++++|+++|+||.+|+|. |.+|+++|+|+|.+.+|. ..++.+.+++++.|.+++
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999996 588999999999998877 556678899999998876
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=1.5e-12 Score=102.11 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=49.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCeEEEEEEEeeCCCCC
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGWFMDVFHVKDEHGNK 90 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~~~d~F~V~d~~g~~ 90 (484)
.+|+|+++||||||++++++|+.+|+||++|+| +|.+|+++|+|+|++.+|..
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~ 55 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE 55 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc
Confidence 589999999999999999999999999999998 66899999999999988763
No 35
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.34 E-value=1e-11 Score=112.64 Aligned_cols=160 Identities=13% Similarity=0.165 Sum_probs=119.0
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063 35 EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA 114 (484)
Q Consensus 35 ~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 114 (484)
.++.+|+++++||||+...+|+...++||||++++++..++.+.-+..+. |. |+....++++|......-...
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs----~dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GS----WDAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eC----HHHHHHHHHHhhcccccCCeE
Confidence 35789999999999999999999999999999999999988887666654 33 678899999987653200110
Q ss_pred cc--ccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCC
Q 048063 115 VA--KTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDD 190 (484)
Q Consensus 115 ~~--~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d 190 (484)
.. +..+++. ...+..+.+.|.+.||||++.+++.+|..+|+||.+....|+. +.-.-.|+.+-. -..|..
T Consensus 76 v~m~rt~~~~~----~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it-~~lPa~- 149 (176)
T COG2716 76 VVMKRTGAHPT----PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQIT-ARLPAN- 149 (176)
T ss_pred EEEeecCCCcc----CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhh-ccCCCc-
Confidence 00 1111121 3456789999999999999999999999999999999988843 233467776654 355552
Q ss_pred hhHHHHHHHHHHHHhcccc
Q 048063 191 PGRLATIEEYITTVLRATA 209 (484)
Q Consensus 191 ~~~~~~l~~~L~~~L~g~~ 209 (484)
..+..|+++|++ |.++.
T Consensus 150 -~~i~~l~~~f~a-l~~~L 166 (176)
T COG2716 150 -LSISALRDAFEA-LCDEL 166 (176)
T ss_pred -CcHHHHHHHHHH-HHHhh
Confidence 567889999877 44443
No 36
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=9e-12 Score=97.69 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEE-EecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH
Q 048063 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA 362 (484)
Q Consensus 293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i-~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~ 362 (484)
..|+|+++||||||++++.+|..+|+||++|+| ++.+|+++|+|+|++.+|. ..+.+.++|+++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~ 66 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKE 66 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHh
Confidence 479999999999999999999999999999999 6778999999999998886 334455555544
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=2.4e-11 Score=96.88 Aligned_cols=67 Identities=24% Similarity=0.451 Sum_probs=60.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
+.|+|.++||||+|++|+++|+.+|+||++|+++|.++.+.|+|+|++. ++.++ +++++++++++|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999988888899999998 68777 6778888887764
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.27 E-value=3.6e-11 Score=95.79 Aligned_cols=70 Identities=57% Similarity=0.954 Sum_probs=64.4
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHhCCCc
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPI 440 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~~ 440 (484)
++.++|.+.||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|.+.+|.+++++..++++++| |.+
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l-~~~ 70 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI-GPA 70 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh-ccc
Confidence 3679999999999999999999999999999999999889999999999999888667889999999 853
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=129.35 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=119.0
Q ss_pred EEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcccc
Q 048063 38 TVVKVDS-VSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVA 116 (484)
Q Consensus 38 t~I~V~~-~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~ 116 (484)
..++|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|....|.+..+....+.++.++.+... .. .
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~ 621 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELP--DP--A 621 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCC--cc--c
Confidence 4777777 9999999999999999999999999988 788889999998778876665666777777766542 11 1
Q ss_pred ccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHH
Q 048063 117 KTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLAT 196 (484)
Q Consensus 117 ~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~ 196 (484)
.-||.+. |.. ++++|.+.||||+|+.++++|. .|..|++.|.|..++|+||+... ....+
T Consensus 622 ~~~~~~~-~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~---------~~r~~ 681 (693)
T PRK00227 622 PGITATF-WHG------NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG---------FDRAT 681 (693)
T ss_pred CCCCceE-eeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc---------ccHHH
Confidence 3356665 543 8999999999999999999999 89999999999999999999843 12367
Q ss_pred HHHHHHHHhcc
Q 048063 197 IEEYITTVLRA 207 (484)
Q Consensus 197 l~~~L~~~L~g 207 (484)
+++++..+|.+
T Consensus 682 ~~~~~~~~~~~ 692 (693)
T PRK00227 682 VERDVTRVLAG 692 (693)
T ss_pred HHHHHHHHHhc
Confidence 88888888764
No 40
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.20 E-value=1.5e-10 Score=91.00 Aligned_cols=70 Identities=34% Similarity=0.570 Sum_probs=63.4
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
|.|.|.+.|+||+|++|+++|+.+|+||.++++.|.++.+.|+|++++. .+.+. +.+++++|+++|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999988889999999998 67774 5689999999988764
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.08 E-value=1.1e-09 Score=86.03 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=62.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH
Q 048063 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA 362 (484)
Q Consensus 293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~ 362 (484)
|.|.|+++|+||+|++++++|.+++++|.++++.+.+++++++|++.+.+|.+ .+.++.+++++.|.+.
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999988778999999999999988 4557889999988765
No 42
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.98 E-value=4.1e-09 Score=116.90 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=99.0
Q ss_pred eEEEEEe-CCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh--hccC-
Q 048063 293 SIVSVDC-KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE--RRVC- 368 (484)
Q Consensus 293 t~V~V~~-~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~--rr~~- 368 (484)
-.++|.. +|++|++.++...|+-++++|..|++.+ +|.+...|.|....|.+.+...-.+.++..+.-.+. ...|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 3566666 9999999999999999999999999988 888889999999999887765333444443333321 1112
Q ss_pred C----ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063 369 E----GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR 417 (484)
Q Consensus 369 ~----~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~ 417 (484)
+ ++++||.+.||||+|+.|+++|. .|.+|+++|.|..+.|.||+.
T Consensus 626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 2 68999999999999999999999 899999999999999999997
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.89 E-value=2e-08 Score=78.45 Aligned_cols=70 Identities=40% Similarity=0.647 Sum_probs=60.8
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
+.|.|.++|+||+|++|+++|+.+|++|.++.+.+.++...++|++..+ .+.+. +++++++|++.|.+++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~~-~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRPL-DPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCcC-CHHHHHHHHHHHHhhC
Confidence 3688999999999999999999999999999999987788899999987 56664 4578899999887653
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.76 E-value=7.5e-08 Score=75.11 Aligned_cols=66 Identities=35% Similarity=0.658 Sum_probs=59.3
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
+.|.|.+.|+||+|++|+.+|.++|++|.++++.|.++...++|++.+.++...++++++.+++.|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l 66 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEAL 66 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999998889999999999887776666778888877
No 45
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.53 E-value=3.8e-06 Score=71.78 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=84.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccccc
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAK 117 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~ 117 (484)
-+|.|+..|+||-++..+..|.++|+||..-.|.-.+.+-+-.+.|.++ +.-.++|.+. .|.
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~----gF~--- 65 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEA----GFT--- 65 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHC----CcE---
Confidence 3789999999999999999999999999977775555555655666432 2223344432 462
Q ss_pred cccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEe
Q 048063 118 TYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSD 181 (484)
Q Consensus 118 ~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~ 181 (484)
|. ..-++-|...|+||-|+.|+++|.++++|+..+..|+. ...+.-+|.+.+
T Consensus 66 ----Vr--------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 66 ----VR--------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred ----EE--------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 22 23577888899999999999999999999999999984 455655555443
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.53 E-value=8.5e-07 Score=71.31 Aligned_cols=65 Identities=25% Similarity=0.447 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
+.+|++.++||||++++++++|+++|+||.+.+..+.++.+.-.+.|+-+ +...++|+++|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988888765 356788888887754
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.50 E-value=1e-06 Score=70.86 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
...|++.++||||+++.++++|+++|+||.+.+.++.+|.+.-.+.|.-+ ++..+.++++|..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE 64 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999888888643 4466777777754
No 48
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.47 E-value=4.2e-07 Score=68.77 Aligned_cols=66 Identities=18% Similarity=0.383 Sum_probs=55.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
++|+|.|||+.||-.++|+++.+.|++|..+.++|++.|++-+|+|...... + .-+|+.|++.|.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~ 66 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMS 66 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999999854322 1 2366777776654
No 49
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.38 E-value=3.6e-06 Score=64.71 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=47.8
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC--eeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND--RLACVAYVSDQSTDTPIDDPGRLATIEEYITTV 204 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~--~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~ 204 (484)
|.|.|.++||||+|++++.+|+++|+||..+.+.+.++ ....++.+.+ ....+++.++|+++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHcc
Confidence 57899999999999999999999999999999999766 3333333333 24556777776653
No 50
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.29 E-value=4.6e-06 Score=67.22 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=37.0
Q ss_pred eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeE
Q 048063 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYA 332 (484)
Q Consensus 293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a 332 (484)
++|.+.||||||+++++++.|+++||||.+++.++.++..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 6899999999999999999999999999999998777744
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.28 E-value=3.9e-06 Score=67.64 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=42.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVK 84 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~ 84 (484)
.+|++.|+||||+.++++++|+++|+||.+++.+..+|++.-.+.+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~ 48 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE 48 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence 57899999999999999999999999999999988888886666665
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=3.4e-06 Score=67.49 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=50.3
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCCh--HHHHHHHHHh
Q 048063 372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDM--DFVESMKKEI 436 (484)
Q Consensus 372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~--~~~~~l~~~L 436 (484)
+++|.+.|||||+++||++|+++|+||...+.++.++.-.-.|.+.-+++..++. +..+.+.+++
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l 67 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAHEL 67 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3789999999999999999999999999999899987767777776554433322 2445555555
No 53
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=4.6e-06 Score=66.78 Aligned_cols=65 Identities=23% Similarity=0.250 Sum_probs=53.0
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
+|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+ .+ ...+.|+++|.....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988888888888887765 22 134777777776543
No 54
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.24 E-value=2.4e-06 Score=65.68 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=39.6
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL 416 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v 416 (484)
|.|.|.+.||||+|++|+++|+++|+||.++.+.+.++.....|..
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~ 46 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIV 46 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEE
Confidence 6799999999999999999999999999999999988753333333
No 55
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=3.1e-05 Score=58.80 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=59.2
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV 204 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~ 204 (484)
++|+|.++|+.||=.++++++.+.|++|..+.+.|.|....-+|+|... ..++ +-+|..|++.|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999865 3333 46899999998765
No 56
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=3.4e-05 Score=63.61 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=52.3
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
.+|++.|+||||++++|+++|+++|+||.+...++.++.+.-.+.+.-+ +.. ...+.|+++|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999987777666666644 101 12477888777744
No 57
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.85 E-value=5e-05 Score=62.66 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=48.3
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCC-CCCCCh--HHHHHHHHHh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDIS-GNEVDM--DFVESMKKEI 436 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~-g~~l~~--~~~~~l~~~L 436 (484)
+.+++.|.||||++++||++|+++|+||...+..+.+.+..-.+.+.-+. +..++. +..+.+.+.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999998776655555554332 222222 2345566666
No 58
>PRK00194 hypothetical protein; Validated
Probab=97.83 E-value=6.1e-05 Score=62.26 Aligned_cols=69 Identities=20% Similarity=0.356 Sum_probs=51.3
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhccc
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLRAT 208 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~g~ 208 (484)
.++|+|.++||||++++++++|+++|+||.+....+.++.+.-.+.+.-+ +.+. ..+.|++.|.+ +.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~-l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE-LGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH-HHHH
Confidence 67999999999999999999999999999999988876655554444433 2111 23677777766 4443
No 59
>PRK07431 aspartate kinase; Provisional
Probab=97.80 E-value=0.021 Score=63.29 Aligned_cols=287 Identities=11% Similarity=0.147 Sum_probs=158.1
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccccccccce
Q 048063 44 SVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAVAKTYTNK 122 (484)
Q Consensus 44 ~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~v 122 (484)
.++++|+++++...|+++|+||.--..+. ..+..--.|.|.+.+- ....+.|++ |.... . ...+
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~---~------~~~i 342 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPAL---G------GAEV 342 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHc---C------CCcE
Confidence 57889999999999999999998654332 2332233466643111 111122221 22111 0 1123
Q ss_pred eeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHH
Q 048063 123 AVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEE 199 (484)
Q Consensus 123 ~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~ 199 (484)
. + ..+...|.|.+. ++||+++++..+|++.|++|.... +.. ..-.|.|.. ...++..+
T Consensus 343 ~-~----~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe--~~Is~vv~~----------~d~~~av~ 403 (587)
T PRK07431 343 L-V----ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSE--VKVSCVIDA----------EDGDKALR 403 (587)
T ss_pred E-E----eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCC--CEEEEEEcH----------HHHHHHHH
Confidence 2 2 235678888885 899999999999999999997665 322 122233322 23456666
Q ss_pred HHHHHhcccccCCCCcccccccccccCCCCCCCCccchhhhhhhhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 048063 200 YITTVLRATAERSPSETHINPLQVKANGFPCGDCIKTNVERRLHQLMLSVRDFDGQCGPNMSRSTPSSAVGFGDEEGMRR 279 (484)
Q Consensus 200 ~L~~~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (484)
.|++.+.-+.. ...++ +++ + .....
T Consensus 404 ~Lh~~f~~~~~----~~~~~------------------------~~~-----~----------------------~~~~~ 428 (587)
T PRK07431 404 AVCEAFELEDS----QIEIN------------------------PTA-----S----------------------GQDEP 428 (587)
T ss_pred HHHHHhccCCc----ccccC------------------------ccc-----c----------------------CCCCC
Confidence 77777743321 11121 000 0 01111
Q ss_pred eEEEEeccCCCceeEEEE-EeCCCCchHHHHHHHHhhCCceEEEEEEEe-cC--CeEEEEEEEEccCCCCCCChhHHHHH
Q 048063 280 TAVYIESCEEKGYSIVSV-DCKDRPRLMFDTVCTLTDMQYVVFHASIGC-HG--DYAFQEYFIRHIDGYALNTEGEKERV 355 (484)
Q Consensus 280 p~V~v~n~~~~~~t~V~V-~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t-~~--g~a~d~f~V~~~~g~~~~~~~~~e~l 355 (484)
+.--|.. ..+...|.+ ..++.+|+++++...|++.|++|..-..+. .+ |..--+|.+...+ ..+.+.+
T Consensus 429 ~v~gIa~--~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~------~~~~~~~ 500 (587)
T PRK07431 429 EVRGVAL--DRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKED------REAAQKV 500 (587)
T ss_pred cEEEEEc--cCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHH------HHHHHHH
Confidence 1111211 123334433 367889999999999999999998765432 22 1222234442211 1122222
Q ss_pred HHHHHHHHhh----ccCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeE-EEEEcCCCCCCChH
Q 048063 356 IKCLEAAIER----RVCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNA-FYLRDISGNEVDMD 427 (484)
Q Consensus 356 ~~~L~~~l~r----r~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~-F~v~~~~g~~l~~~ 427 (484)
.+.|...+.. -...-..|.|.+. .+||+++++..+|.+.||+++.... ..... |+|...+. ++
T Consensus 501 l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~-----S~~~Is~vV~~~~~----~~ 571 (587)
T PRK07431 501 LRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT-----SEIRTSCVVAEDDG----VK 571 (587)
T ss_pred HHHHHHhcCCceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec-----cceEEEEEEeHHHH----HH
Confidence 2223222210 0122477888886 7899999999999999999977662 33444 55532211 23
Q ss_pred HHHHHHHHh
Q 048063 428 FVESMKKEI 436 (484)
Q Consensus 428 ~~~~l~~~L 436 (484)
.+..|.+++
T Consensus 572 av~~Lh~~f 580 (587)
T PRK07431 572 ALQAVHQAF 580 (587)
T ss_pred HHHHHHHHh
Confidence 556666666
No 60
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.80 E-value=0.00013 Score=58.69 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=46.4
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC------CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN------DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~------~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
+|+|.++|+||++++|+++|+++|+||.+....|.+ +.+.-.+.+.-+ .+ ....+++++|....
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHHHH
Confidence 378999999999999999999999999999999865 223333333332 11 12467777776633
No 61
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.79 E-value=0.00012 Score=58.20 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=46.3
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
+|+|.++||||++++|+++|+++|+||.+.+.++..+. ..|+..-. ...|-. ....+.|+++|....
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~--~~f~~~~~-~~~~~~-~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS--GRFFMRVE-FELEGF-DLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC--CeEEEEEE-EEeCCC-CCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999998873222 23544332 111110 013577888777644
No 62
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.73 E-value=0.00021 Score=57.57 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=39.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC------CeEEEEEEEeeC
Q 048063 39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDA------GWFMDVFHVKDE 86 (484)
Q Consensus 39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~------g~~~d~F~V~d~ 86 (484)
+|+|.++|+||+.++++++|+++|+||.+.+..+.+ +.+.-.+.+.-+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p 54 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP 54 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence 378999999999999999999999999999987754 555555666544
No 63
>PRK00194 hypothetical protein; Validated
Probab=97.71 E-value=0.00011 Score=60.70 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=39.3
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL 416 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v 416 (484)
.+.+++.+.||||++++|+++|+++|+||...+-.+.++...-.+.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v 49 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV 49 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE
Confidence 36899999999999999999999999999999988876544443333
No 64
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00019 Score=57.03 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=32.5
Q ss_pred EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEec
Q 048063 294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCH 328 (484)
Q Consensus 294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~ 328 (484)
+|.|.|+||||+++++++.|+++||||.+.+..+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 47899999999999999999999999999999763
No 65
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.65 E-value=0.00036 Score=56.21 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=47.8
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
-.+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+.-.|.+.-. +.+++..|-+.|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999984 4556666666544 3556666655543
No 66
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.57 E-value=0.0023 Score=64.35 Aligned_cols=115 Identities=11% Similarity=0.045 Sum_probs=69.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc-CCCCCCccc
Q 048063 39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD--AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT-TGEIPSSAV 115 (484)
Q Consensus 39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~--~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~-~~~~~~~~~ 115 (484)
.|+|.|+|||||.++++++|+++|+||++.+.+.+ +|++.-.+.+.-+.. ..+ .+.|+++|.. ... .+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~-~~~----~~~l~~~l~~~~~~--~~-- 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF-RLE----ESSLLAAFKSALAE--KF-- 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC-CCC----HHHHHHHHHHHHHH--Hh--
Confidence 68999999999999999999999999999998774 477776666653321 122 2344444433 210 11
Q ss_pred cccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 116 AKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 116 ~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
.-.+. +.+.... ..|-|.+.-+-.=|.+|......-.+++.-+-+.+
T Consensus 73 ---~l~i~-l~~~~~~--~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vis 119 (280)
T TIGR00655 73 ---EMTWE-LILADKL--KRVAILVSKEDHCLGDLLWRWYSGELDAEIALVIS 119 (280)
T ss_pred ---CCEEE-EecCCCC--cEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEE
Confidence 11222 3322222 23444444445567777777766666655555544
No 67
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.55 E-value=0.0017 Score=65.42 Aligned_cols=118 Identities=9% Similarity=0.057 Sum_probs=65.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063 37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS--SDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA 114 (484)
Q Consensus 37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It--t~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 114 (484)
..+|+|.|+|||||.++++++|+++|+||++.+.+ +..|.++-.+.+.+......+ .+.|+++|..... .+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~----~~~l~~~l~~l~~--~l- 81 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAAS----VDTFRQEFQPVAE--KF- 81 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCC----HHHHHHHHHHHHH--Hh-
Confidence 46899999999999999999999999999999975 334444333333322111122 2444444433110 01
Q ss_pred ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
...+. +.+.... ..|-|.+.-+..=|.+|........++..-+-+.+
T Consensus 82 ----~l~~~-i~~~~~~--~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~vis 128 (289)
T PRK13010 82 ----DMQWA-IHPDGQR--PKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIIS 128 (289)
T ss_pred ----CCeEE-EecCCCC--eEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEE
Confidence 11122 2222222 23333334445556666666666666555555544
No 68
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.50 E-value=0.0044 Score=53.40 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=78.1
Q ss_pred EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhccCCceEE
Q 048063 294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRL 373 (484)
Q Consensus 294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr~~~~t~l 373 (484)
+|.|+..++||-+..+++.|.+.|+||..-.|.-.+++-+--.+|-. -++-.+.|+++= =.....-++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~-----------~d~A~~~Lee~g-F~Vr~~dVl 72 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR-----------PDEAHSVLEEAG-FTVRETDVL 72 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC-----------hHHHHHHHHHCC-cEEEeeeEE
Confidence 68899999999999999999999999999999666655433333322 122333344320 000013567
Q ss_pred EEEecCCcchHHHHHHHHHhCCceEEEEEeeec-CCeeeeEEEEE
Q 048063 374 ELCAANRVGLLSDITRVLRENGLAVVRAHVATK-GEKSVNAFYLR 417 (484)
Q Consensus 374 eV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~-g~~a~d~F~v~ 417 (484)
-|+..|+||=|+.|+.+|.+++||+.++-.-+. .++|.-.|.+.
T Consensus 73 aVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e 117 (142)
T COG4747 73 AVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE 117 (142)
T ss_pred EEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh
Confidence 788899999999999999999999988766543 34455555443
No 69
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.50 E-value=0.0019 Score=65.08 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=42.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEe
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVK 84 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~ 84 (484)
....|+|.|+|||||.++++++|+++|+||.+.+.++ .+|.+.-.+.+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~ 55 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE 55 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence 3578999999999999999999999999999999888 777766555554
No 70
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00013 Score=57.54 Aligned_cols=67 Identities=21% Similarity=0.332 Sum_probs=51.0
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec--CCeeeeE--EEEEcCCCCCCCh-----HHHHHHHHHhCCC
Q 048063 372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATK--GEKSVNA--FYLRDISGNEVDM-----DFVESMKKEILGP 439 (484)
Q Consensus 372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~--g~~a~d~--F~v~~~~g~~l~~-----~~~~~l~~~L~~~ 439 (484)
.||+++..||-.+||+|-+|+.++++|++|+|..+ +++.+.+ |.+.+. ++.++. ...+.++..|||+
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHHHHHhcC
Confidence 38999999999999999999999999999999854 5665554 556554 333552 2446777778775
No 71
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.46 E-value=0.0011 Score=53.32 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=49.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
+.|.|.+.||||++++|+.++++.|+||.+..+.+ .++.+.-.|.|.- .+.+.++.|.+.|..
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCT
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHC
Confidence 58899999999999999999999999999999866 4788777777753 334566777777754
No 72
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.40 E-value=0.00025 Score=58.23 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=52.4
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
..+|+|.+.||||+.+.++++|+++|+||++-.-.-..+...-.+.|.-+ .. ......+++.|.+...
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998766677777777776543 11 2334677777666553
No 73
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0016 Score=51.34 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=46.3
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
|.|.+.||||+|++|+.++++.|+||.+....+. .+.+...|.+.-. +.++++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence 6889999999999999999999999999888764 3455555655543 34566776666544
No 74
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.26 E-value=0.00036 Score=57.37 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=42.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 048063 37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVK 84 (484)
Q Consensus 37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~ 84 (484)
..+|||.++||||+.+.++++|+++|.||++-..+--+|++--.+.|.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 468999999999999999999999999999988777888887666664
No 75
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.24 E-value=0.0032 Score=49.57 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=47.5
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
|.|.++||||+|++|+.++++.|.||.+....+ .+|++...|.+.- .+.+.++.+.+.|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev------~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA------PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc------CCHHHHHHHHHHHhc
Confidence 678999999999999999999999999888754 4677766666642 234566777777754
No 76
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.20 E-value=0.011 Score=59.58 Aligned_cols=116 Identities=9% Similarity=0.013 Sum_probs=67.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063 37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA 114 (484)
Q Consensus 37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 114 (484)
...|+|.|+||||+.++++++|+++|+||.+.+.++ .++.+.-.+.+..+.+. + .+.|+++|..... .+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~----~~~L~~~L~~l~~--~l- 77 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--D----EDALRAGFAPIAA--RF- 77 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--C----HHHHHHHHHHHHH--Hh-
Confidence 468999999999999999999999999999999754 45666655565434332 1 2444444333210 00
Q ss_pred ccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 115 VAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
...+. +.+..... .|-|.+.-+---|..+........++..-+-+.|
T Consensus 78 ----~l~i~-i~~~~~~~--ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 78 ----GMQWE-LHDPAARP--KVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred ----CcEEE-EeecccCc--eEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEE
Confidence 11122 22222221 2333333345556666666666665555555544
No 77
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.18 E-value=0.0095 Score=60.10 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=37.0
Q ss_pred ceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEe--cCC
Q 048063 291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGC--HGD 330 (484)
Q Consensus 291 ~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t--~~g 330 (484)
.+.+|+|.|+||||++++++++|+++||||.+.+.++ .+|
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g 46 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG 46 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence 4678999999999999999999999999999999987 556
No 78
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.10 E-value=0.011 Score=59.82 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=33.1
Q ss_pred eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEE
Q 048063 292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIG 326 (484)
Q Consensus 292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~ 326 (484)
..+|+|.|+||||+++.++..|+++|+||.+.+..
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 35899999999999999999999999999999995
No 79
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.10 E-value=0.012 Score=59.21 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=61.0
Q ss_pred EEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecC--CeEEEEEEEEccCCCCCCChhHHHHHHHHHHH----HHh---
Q 048063 294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHG--DYAFQEYFIRHIDGYALNTEGEKERVIKCLEA----AIE--- 364 (484)
Q Consensus 294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~--g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~----~l~--- 364 (484)
+|+|.|+||||+++.++..|+++|+||.+.+.+... |+.. +.+..+..+..++ ++++++.|++ .+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~-mr~~v~~~~~~~~----~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFF-MRVEFQLEGFRLE----ESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEE-EEEEEEeCCCCCC----HHHHHHHHHHHHHHHhCCEE
Confidence 589999999999999999999999999999997643 5332 1112222221122 4455555444 331
Q ss_pred --hccCCceEEEEEecCCcchHHHHHHHHHhCCceEE
Q 048063 365 --RRVCEGVRLELCAANRVGLLSDITRVLRENGLAVV 399 (484)
Q Consensus 365 --rr~~~~t~leV~a~DRpGLL~~It~~f~~~gi~I~ 399 (484)
+...+...|=|-+--+..-|.+|-.......++..
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~ 113 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE 113 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence 11112334444444555566777777766655433
No 80
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0055 Score=47.26 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=29.5
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
+.|..+|+||+|++|+.+|+++|+||.+.....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~ 33 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDR 33 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEe
Confidence 357889999999999999999999999888665
No 81
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.05 E-value=0.0032 Score=63.45 Aligned_cols=68 Identities=12% Similarity=0.243 Sum_probs=49.5
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
..++|+|.++||||+.++|+++|+++|+||.+...+|.. +.+.-.+.+..+ .+ ...+.|+++|.+...
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~------~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG------LDEDALRAGFAPIAA 75 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC------CCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999987533 333334444333 12 125778888777443
No 82
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.01 E-value=0.0028 Score=50.38 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=32.7
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH 169 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~ 169 (484)
.|.|.+.||+|+|++|+.+++..|+||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999998775
No 83
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.00 E-value=0.0052 Score=49.43 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=47.7
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE-ecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW-SHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV 204 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~-T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~ 204 (484)
..|.+...|+||+|++|+++|+..|.||.+..+. |......-+..+... ++...+.|...|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-------~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-------TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-------CHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999987 444445444333333 245667777776654
No 84
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.005 Score=47.70 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=37.4
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEE
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVS 180 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~ 180 (484)
..+.|..+|+||.|++|+.+|+++|+||.+..++..++. -++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 467889999999999999999999999999998876554 344443
No 85
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0041 Score=60.98 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=39.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEE
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFH 82 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~ 82 (484)
...++++.|+|++||.++|++.|+++||||.++..++ ..|+++-...
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~ 54 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVE 54 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEE
Confidence 4579999999999999999999999999999999876 3566654433
No 86
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.87 E-value=0.0037 Score=46.63 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=38.4
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEe
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSD 181 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~ 181 (484)
|.|...|+||.|++++.+|.++|+||.+..++..+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999988755 56666666544
No 87
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.85 E-value=0.0083 Score=48.27 Aligned_cols=61 Identities=8% Similarity=0.095 Sum_probs=44.0
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
+.+.+...|+||+|+.|+.+|+..|+||.+..+.-..+. ...+..+... ++...+++..+|
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~-----~~~~i~qi~kQL 64 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC-----TENEATLLVSQL 64 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC-----CHHHHHHHHHHH
Confidence 578999999999999999999999999999998733333 4444344332 233455666655
No 88
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.82 E-value=0.0081 Score=50.32 Aligned_cols=67 Identities=15% Similarity=0.252 Sum_probs=48.8
Q ss_pred CCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 131 SEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 131 ~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
....+|.+...|+||+|++|++.|+..|.||.+..+.- ......-+..+... +..++++...|.+..
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~--------~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND--------DQRLEQMISQIEKLE 73 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC--------chHHHHHHHHHhCCc
Confidence 34577999999999999999999999999999998774 33333333323221 246778877776644
No 89
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.77 E-value=0.0077 Score=46.64 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=37.6
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR 417 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~ 417 (484)
+.+.|...|+||.|++|+.+|.++|+||.+.-+...+++ -+|.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 458899999999999999999999999999988766553 455553
No 90
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.71 E-value=0.0089 Score=48.84 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=48.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
..|.+...|+||.|++|+++|+..|+||.+..+.. ....+..+-.+... | |+..++++...|.+..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~--~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI--Q----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC--C----CHHHHHHHHHHHhCCc
Confidence 46889999999999999999999999999999885 44444433333331 2 3566778877776644
No 91
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.69 E-value=0.012 Score=54.98 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=47.4
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
..+.|.+.|+||+|++|+++|+.+|+||.+..+.+....-..-+.+.-+ + ++..++.|+++|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999987522222223333322 2 1234678888887755
No 92
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.68 E-value=0.013 Score=46.14 Aligned_cols=62 Identities=13% Similarity=0.229 Sum_probs=44.6
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChh-HHHHHHHHHHH
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQSTDTPIDDPG-RLATIEEYITT 203 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~~~g~~i~d~~-~~~~l~~~L~~ 203 (484)
.+.|.+.|+||+|++|+.+|+++|+||......+.. +.+.-.|.+... +.+ .+.+|-+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence 578999999999999999999999999998865533 444455555433 223 55666655543
No 93
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.014 Score=45.27 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH 169 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~ 169 (484)
+.+.|..+|+||.|+++++.|+++|+||.+......
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 568889999999999999999999999998887764
No 94
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.66 E-value=0.012 Score=45.13 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=42.7
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec-CCe-eeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATK-GEK-SVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~-g~~-a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
.+.+.+.|+||+|++|+.+|+++|++|.+....+. ++. +.=.|.+ +.. + +..+.+..+|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~----~-~~~~~l~~~l 62 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-EGD----D-DVIEQIVKQL 62 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-ECC----H-HHHHHHHHHH
Confidence 47899999999999999999999999999998775 333 3333334 321 2 4455555655
No 95
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.63 E-value=0.015 Score=44.76 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=42.8
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-----AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-----~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
+.|..+|+||+|++++.+|+.+|+||.+...... .++..-.|.+... +.+.++.+.+.|..
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 3578899999999999999999999998776432 4555544555421 23355666666654
No 96
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.60 E-value=0.014 Score=47.04 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=40.2
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC-eeeeEEEEEcCCCC
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE-KSVNAFYLRDISGN 422 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~-~a~d~F~v~~~~g~ 422 (484)
+.+.+...|+||.|++|...|+++|+||.+......+. ...=.|+|.. +|.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~ 53 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH 53 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC
Confidence 45778889999999999999999999999998776654 3445777743 454
No 97
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.60 E-value=0.0042 Score=49.22 Aligned_cols=66 Identities=21% Similarity=0.386 Sum_probs=48.4
Q ss_pred EEEEEeCCCCchHHHHHHHHhhCCceEEEEEE--EecCCeEEEEEEEEccCCC-CCCChhHHHHHHHHH
Q 048063 294 IVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI--GCHGDYAFQEYFIRHIDGY-ALNTEGEKERVIKCL 359 (484)
Q Consensus 294 ~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i--~t~~g~a~d~f~V~~~~g~-~~~~~~~~e~l~~~L 359 (484)
.|++.|+-||..|||+|-+|+.+++.|++|+| ...++.-+..|-++..++. .+........+...+
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv 70 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRV 70 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHH
Confidence 37889999999999999999999999999999 4455677888777765443 344333344444333
No 98
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.59 E-value=0.0067 Score=45.21 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=38.6
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC-CeeeeEEEEEc
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG-EKSVNAFYLRD 418 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g-~~a~d~F~v~~ 418 (484)
+++...|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999987665 56666676644
No 99
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.59 E-value=0.0071 Score=56.45 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=33.1
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeee
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVAT 405 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T 405 (484)
+.+.|.+.|+||+|+.|+.+|+++|+||.+..+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 57999999999999999999999999999999965
No 100
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.58 E-value=0.021 Score=43.76 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
.+.+.+.|+||+|++|+.+|+++|+||.+....+. ++.....++..+. .+ ...+.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG------DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC------CH-HHHHHHHHHHh
Confidence 46788999999999999999999999999998775 4443333333322 12 44556665554
No 101
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.57 E-value=0.0074 Score=47.29 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=43.1
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC-eeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE-KSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~-~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
|.+.|.+.|+||+|.+|+.+|.++|++|.+....+..+ ......+++.. .+.++.+++.+.|
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~i~~L 63 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE----TSEAALNAALAEI 63 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc----CCHHHHHHHHHHH
Confidence 45889999999999999999999999999998765432 22223333322 2344555666666
No 102
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.019 Score=44.92 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=42.5
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND-RLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~-~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
-|.|.+.|+||+|++++.+|+.+|+||......+..+ ....+..++.. .+...++.+.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHH
Confidence 4788899999999999999999999999998765432 33333333333 12445555555544
No 103
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0069 Score=59.42 Aligned_cols=37 Identities=30% Similarity=0.619 Sum_probs=35.2
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
..+++++.|+|+|||.++|++.|+++|+||.++.-++
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~ 42 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD 42 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence 5689999999999999999999999999999999886
No 104
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.43 E-value=0.0099 Score=46.17 Aligned_cols=47 Identities=11% Similarity=0.290 Sum_probs=37.6
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEE
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLR 417 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~ 417 (484)
+.+.|...|+||.|++++++|+++|++|.+....... ....-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 5688999999999999999999999999988766652 2344456664
No 105
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.43 E-value=0.023 Score=52.20 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=47.9
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeE-EEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLA-CVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~-dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
.+|.|...|+||.|++|+++|+.+|+||.+..+.... .... -+|.|. + ++...+.|...|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhcCc
Confidence 4688999999999999999999999999999887654 3333 334332 2 2456778888877644
No 106
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.38 E-value=0.021 Score=46.73 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=44.6
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
..+.+...|+||+|+.|+..|.+.|+||.+..+...-....-.+-++-..|. +...+++..+|
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL 65 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKL 65 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHH
Confidence 4688999999999999999999999999999988554443333333221122 33455666666
No 107
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.38 E-value=0.026 Score=51.99 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=48.0
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeE-EEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLA-CVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~-dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
..|.|...|+||.|++|+++|+.+|+||.+..+.... .... -+|.+. . ++..++++...|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~-~-------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS-G-------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE-C-------CHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999999877543 3333 334332 2 2466788888877654
No 108
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.026 Score=43.37 Aligned_cols=36 Identities=19% Similarity=0.485 Sum_probs=32.5
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~ 170 (484)
.+.+.++|+||.|++++..|+++++||.+....+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 578899999999999999999999999998877653
No 109
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.30 E-value=0.022 Score=47.73 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=50.3
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCee-eeEEEEEcCCCCCCChHHHHHHHHHhCCC--ceEEeec
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKS-VNAFYLRDISGNEVDMDFVESMKKEILGP--IDLAVKN 446 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a-~d~F~v~~~~g~~l~~~~~~~l~~~L~~~--~~~~~~~ 446 (484)
.+.|.+...|+||+|+.|+..|++.|+||.+..+.-..... ..+..+.. + ++..+++..+| -. .++.+..
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~----~~~i~Qi~kQL-~KLidVikV~~ 80 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D----DQRLEQMISQI-EKLEDVLKVRR 80 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C----chHHHHHHHHH-hCCcCEEEEEE
Confidence 57899999999999999999999999999999987555543 44444433 2 23456666666 22 3555544
Q ss_pred C
Q 048063 447 D 447 (484)
Q Consensus 447 ~ 447 (484)
-
T Consensus 81 l 81 (96)
T PRK08178 81 N 81 (96)
T ss_pred C
Confidence 3
No 110
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.30 E-value=0.026 Score=43.00 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=37.0
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEE
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYL 416 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v 416 (484)
+.|.+.|+||+|++|+++|.++|++|.+..+...+ +.+.-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999987764 344445555
No 111
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.28 E-value=0.052 Score=43.67 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=39.7
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeC
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQ 182 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~ 182 (484)
+.+.+..+|+||.|+++..+|+++|+||.+....... +...-+|+|...
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 4577788999999999999999999999999877643 345567777664
No 112
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.23 E-value=0.016 Score=44.24 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=36.8
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEE
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYV 179 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V 179 (484)
+.|.+.|+||++++|+.+|+++|+||.+..+.... +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57889999999999999999999999999988754 444455555
No 113
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.20 E-value=0.036 Score=43.91 Aligned_cols=59 Identities=12% Similarity=0.266 Sum_probs=42.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
.+.|.+.||+|++++|+.++++.|.||....+.+. +... |.+. +.+...++.+.+.|..
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~------v~~~~~L~~li~~L~~ 60 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFP------TIEFEKLQTLMPEIRR 60 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeE------ecCHHHHHHHHHHHhC
Confidence 47899999999999999999999999999998665 5422 3332 1123455666666654
No 114
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.18 E-value=0.029 Score=51.50 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=49.0
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHhCCC--ceEEeec
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGP--IDLAVKN 446 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~--~~~~~~~ 446 (484)
+.++|...|+||.|++|+..|+++|+||.+..+....+...-.+.++- +| ++...+++..+| -. .++.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V-~~---d~~~i~qi~kQl-~Kli~V~~V~~ 74 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVV-VG---DDKVLEQITKQL-NKLVDVIKVSD 74 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEE-EC---CHHHHHHHHHHH-hcCccEEEEEe
Confidence 578999999999999999999999999999988766533333233221 13 244556666666 22 4556654
No 115
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.033 Score=42.61 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=30.5
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeee
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVAT 405 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T 405 (484)
+.+.+.|+||+|++|+.+|.++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678999999999999999999999999988765
No 116
>PRK08577 hypothetical protein; Provisional
Probab=96.11 E-value=0.046 Score=48.85 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=37.3
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063 129 YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170 (484)
Q Consensus 129 ~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~ 170 (484)
.....+.|.|.+.|+||+|++|+.+|+++|+||.+....+..
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 444589999999999999999999999999999999887743
No 117
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.05 E-value=0.042 Score=44.21 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=33.5
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATK 406 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~ 406 (484)
+.+++...++||.|+.|+..|+..|+||.+..+.-.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t 39 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQN 39 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeec
Confidence 679999999999999999999999999999998753
No 118
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.05 E-value=0.033 Score=42.26 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=31.4
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~ 170 (484)
++.|..+|+||-|++++.+|+++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367888999999999999999999999988876543
No 119
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.04 E-value=0.057 Score=42.47 Aligned_cols=62 Identities=6% Similarity=0.075 Sum_probs=46.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHH-HHHHHHHHHcc
Q 048063 39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQK-VINYIQQAIGT 106 (484)
Q Consensus 39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~-~~~~L~~~L~~ 106 (484)
.+.|.++|+||++++++++|+++|.||......+ .+|.+--.|.+... +.+ .++.|.+.|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC------chHHHHHHHHHHHhc
Confidence 5789999999999999999999999999877644 35665555666421 122 56777777654
No 120
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.01 E-value=0.045 Score=50.47 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=48.0
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeee-EEEEEcCCCCCCChHHHHHHHHHhCCC--ceEEeec
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN-AFYLRDISGNEVDMDFVESMKKEILGP--IDLAVKN 446 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d-~F~v~~~~g~~l~~~~~~~l~~~L~~~--~~~~~~~ 446 (484)
+.++|...|+||.|++|+..|+++|+||.+..+....+...- +....+ | ++...+++..+| -. .++.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~---~~~~i~qi~kQl-~KLidV~~V~~ 75 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G---DEQVIEQITKQL-NKLIDVLKVVD 75 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C---CHHHHHHHHHHH-hccccEEEEEe
Confidence 568999999999999999999999999999987655433222 222223 2 244556666666 22 4556654
No 121
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.88 E-value=0.054 Score=43.59 Aligned_cols=62 Identities=5% Similarity=0.100 Sum_probs=45.8
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeE-EEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLA-CVAYVSDQSTDTPIDDPGRLATIEEYITTV 204 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~-dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~ 204 (484)
..|.+...|+||.|++++++|+..|.||.+..+.. .+.... -++.+. . +..++.|.+.|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~--------~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-S--------ERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-C--------CchHHHHHHHHhcC
Confidence 57899999999999999999999999999999875 343333 334332 1 23456777776653
No 122
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.86 E-value=0.077 Score=39.38 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=35.4
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCe-eEEEEEEE
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDR-LACVAYVS 180 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~-~~dvF~V~ 180 (484)
|.|.+.|+||.+.+++..|.+++++|.+..+...++. ..-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 4678999999999999999999999999998776533 33334443
No 123
>PRK04435 hypothetical protein; Provisional
Probab=95.82 E-value=0.085 Score=47.91 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=51.6
Q ss_pred ecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 125 FGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 125 ~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
|..........|.+...|+||+|++|..+|+++|+||......+.. +.+.-.|.+... + . ...++.|.+.|+.
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L~~ 134 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKLRN 134 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHHHc
Confidence 3444566789999999999999999999999999999998866543 444555655543 1 1 1255555555443
No 124
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.81 E-value=0.032 Score=42.35 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=33.8
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL 416 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v 416 (484)
+.|...|+||-|++++.+|.++|+||.+.............+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~ 45 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIF 45 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEE
Confidence 67888999999999999999999999988764443223333444
No 125
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.75 E-value=0.062 Score=41.21 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=31.9
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec
Q 048063 372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATK 406 (484)
Q Consensus 372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~ 406 (484)
.+.+.+.|+||.|++|+..|.+++++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47889999999999999999999999998887665
No 126
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.66 E-value=0.075 Score=41.69 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=30.2
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH 169 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~ 169 (484)
+.|..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5778899999999999999999999998876543
No 127
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.66 E-value=0.015 Score=44.85 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=41.4
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKK 434 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~ 434 (484)
+-+.+.|+||+|++|+.+|.++|+||.+....+.++.+.-.|.+. .. ..++..++|++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~---~~-~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID---SE-VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC---CC-CCHHHHHHHHc
Confidence 456899999999999999999999998887665554454455442 22 22445566664
No 128
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.63 E-value=0.058 Score=41.93 Aligned_cols=59 Identities=17% Similarity=0.373 Sum_probs=41.6
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeec--CCeeeeEEEEEcCCCCCCChHHHHHHHHH
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATK--GEKSVNAFYLRDISGNEVDMDFVESMKKE 435 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~--g~~a~d~F~v~~~~g~~l~~~~~~~l~~~ 435 (484)
+-+...|+||.+++|+..|+++|++|.+...... ++.+.-+|.+ ++ +.+.+..+.|++.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v---~~-~~~~~~~~~l~~~ 62 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV---DE-PVPDEVLEELRAL 62 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe---CC-CCCHHHHHHHHcC
Confidence 3468899999999999999999999998876543 3445444444 33 3344555666553
No 129
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.49 E-value=0.055 Score=41.31 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.5
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
+.+.+.|+||.|++|+..|+++|+||.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578899999999999999999999999998776
No 130
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.44 E-value=0.14 Score=35.86 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=31.5
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~ 170 (484)
|.+.++|+||++++++.+|..+|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987643
No 131
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.12 Score=40.10 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=31.3
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 134 TAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 134 t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
+.+.+..+|+||.|.+++.+|+++|+||.+....-
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~ 36 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP 36 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence 56888999999999999999999999999887543
No 132
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.22 E-value=0.025 Score=43.65 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=36.2
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEe
Q 048063 40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVK 84 (484)
Q Consensus 40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~ 84 (484)
+++.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 678999999999999999999999998766554457666555543
No 133
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.16 E-value=0.17 Score=37.51 Aligned_cols=59 Identities=22% Similarity=0.416 Sum_probs=42.5
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
|.|.+.|+||++.+|+.+|.+++++|.+..+...++. +.-.|.+... +....+.+.++|
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 60 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKL 60 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHH
Confidence 4678999999999999999999999999998776532 3333434322 233456666666
No 134
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.16 E-value=0.056 Score=42.02 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=35.7
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEEE
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYVS 180 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V~ 180 (484)
+.+...|+||.+++++.+|+++|+||.+...... ++...-+|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 4568999999999999999999999999887653 44555555543
No 135
>PRK08577 hypothetical protein; Provisional
Probab=95.13 E-value=0.3 Score=43.62 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=43.4
Q ss_pred EEEEeccC--CCceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEec--CCeEEEEEEE
Q 048063 281 AVYIESCE--EKGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCH--GDYAFQEYFI 338 (484)
Q Consensus 281 ~V~v~n~~--~~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~--~g~a~d~f~V 338 (484)
.|.+.+-. .+....+.|.+.|+||+++++++.|++.++||.+....+. ++.+.-.|.+
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v 104 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV 104 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence 55555443 3447889999999999999999999999999999888443 3444333433
No 136
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.05 E-value=0.14 Score=35.95 Aligned_cols=35 Identities=31% Similarity=0.556 Sum_probs=31.5
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG 407 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g 407 (484)
|.+.+.|+||++++|+.+|.++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987654
No 137
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.02 E-value=0.15 Score=39.98 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=41.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe---cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS---DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt---~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
+.+..+|+||-+++++.+|+++|.||.+..... ..+.-.-.+.|.. +. ++.++.|.++|.+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~-e~-----~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP-MD-----RSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE-ec-----chHHHHHHHHHhC
Confidence 678899999999999999999999999876533 2344333444432 11 1235677777643
No 138
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.01 E-value=0.35 Score=40.21 Aligned_cols=74 Identities=5% Similarity=0.074 Sum_probs=52.0
Q ss_pred CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
......+.|.+..+|+||-|+++-..|+.+|+|+........ +....=.|||.-. |. . + ..+..+-+.|.+.+.
T Consensus 9 ~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie--g~-~-~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 9 SNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD--KK-S-A-PALDPIIKSLRNDIG 83 (90)
T ss_pred cCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE--cC-C-C-HHHHHHHHHHHHHhC
Confidence 334455778888899999999999999999999998887653 3445567888765 43 2 2 344445455555443
No 139
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.96 E-value=0.16 Score=42.24 Aligned_cols=64 Identities=14% Similarity=0.363 Sum_probs=47.0
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChH---HHHHHHHHh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMD---FVESMKKEI 436 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~---~~~~l~~~L 436 (484)
+.|-+...|+||-|+++-..|+++|||+.+..-+-...+ -+=.||| |.+|. .++. ..+.|++.|
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-SAPALDPIIKSLRNDI 82 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-CCHHHHHHHHHHHHHh
Confidence 556677799999999999999999999999998866544 4457777 55675 2332 345555555
No 140
>PRK07334 threonine dehydratase; Provisional
Probab=94.94 E-value=0.15 Score=53.84 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=49.0
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec----C-CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH----N-DRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~----~-~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
-.+.|.|.+.||||+|++|+.+|++.++||.+....+. . +.+.-.|.|.-. +.+++++|.+.|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999998764 3 333333444322 35677777777665
No 141
>PRK07431 aspartate kinase; Provisional
Probab=94.90 E-value=2.6 Score=46.88 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=64.5
Q ss_pred eeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh----
Q 048063 292 YSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE---- 364 (484)
Q Consensus 292 ~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~---- 364 (484)
...|.|.|. +.+|+.+++..+|.+.+++|.... + .+.. -+|+|.. ...++..+.|.+.+.
T Consensus 348 ~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~---------~d~~~av~~Lh~~f~~~~~ 414 (587)
T PRK07431 348 VAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDA---------EDGDKALRAVCEAFELEDS 414 (587)
T ss_pred eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcH---------HHHHHHHHHHHHHhccCCc
Confidence 356667664 799999999999999999996433 2 2211 1234422 234455555555551
Q ss_pred hc--------cCC-----------ceEEEEE-ecCCcchHHHHHHHHHhCCceEEEEEee
Q 048063 365 RR--------VCE-----------GVRLELC-AANRVGLLSDITRVLRENGLAVVRAHVA 404 (484)
Q Consensus 365 rr--------~~~-----------~t~leV~-a~DRpGLL~~It~~f~~~gi~I~~A~i~ 404 (484)
+. .+. -..|+|. ..+.||+++.|...|.++|++|.....+
T Consensus 415 ~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~ 474 (587)
T PRK07431 415 QIEINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS 474 (587)
T ss_pred ccccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence 10 010 1334443 3578999999999999999999998653
No 142
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.85 E-value=0.11 Score=40.22 Aligned_cols=57 Identities=11% Similarity=0.258 Sum_probs=38.3
Q ss_pred CCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 142 DRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 142 DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
|+||.|.+|+++|...|+||.+..+.. ..+....+-.+... + +...+.|...|.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~-~------~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG-D------DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES--------CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee-C------chhHHHHHHHHhccC
Confidence 789999999999999999999999987 33333333222222 1 234567777776543
No 143
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.79 E-value=0.13 Score=39.93 Aligned_cols=34 Identities=26% Similarity=0.544 Sum_probs=30.9
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEee
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVA 404 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~ 404 (484)
+.+.+...|+||.|..++++|.++|++|.+....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 5688999999999999999999999999988654
No 144
>PRK04435 hypothetical protein; Provisional
Probab=94.68 E-value=0.38 Score=43.69 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=52.8
Q ss_pred EEecCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 28 CIDNESMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 28 ~i~~~~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
-++.......+.+.+...|+||++++|..+|+.+|+||.....+. .+|.+--.|.|...+. ...++.|.+.|..
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~ 134 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRN 134 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence 344444556789999999999999999999999999999877654 4676665666653211 2255666666654
No 145
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.56 E-value=0.026 Score=46.26 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=44.6
Q ss_pred EEEEEecC-CCchHHHHHHHHHhCCCeEEEEEEEec-----C----CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063 135 AIEMTGTD-RPGLFSEISAALADLHCNIVEAHAWSH-----N----DRLACVAYVSDQSTDTPIDDPGRLATIEEYITTV 204 (484)
Q Consensus 135 ~i~V~~~D-rpGLL~~Ia~vL~~~glnI~~A~i~T~-----~----~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~ 204 (484)
+|+|.++| +.|++++++++|+++|+||.+.+-.+. + ..+.-.|.|..+ + ...+.++++|.+.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~----~~~~~lr~~L~~l 72 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P----ADLEALRAALLEL 72 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C----CCHHHHHHHHHHH
Confidence 47899999 999999999999999999976654321 1 244567777643 1 1346778877753
No 146
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.45 E-value=0.22 Score=39.62 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=38.6
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCC
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISG 421 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g 421 (484)
|-+...|+||-|+++-..|+.+|||+.+.+-+....+ .+=.||| |-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 4556689999999999999999999999998866544 5557777 5556
No 147
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.43 E-value=0.25 Score=56.02 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=52.3
Q ss_pred ecCC-CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC--CeeEEEEEEEeCCCCCCCCChhHHHHHHHHH
Q 048063 125 FGSE-YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN--DRLACVAYVSDQSTDTPIDDPGRLATIEEYI 201 (484)
Q Consensus 125 ~~~~-~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~--~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L 201 (484)
|+.. ...-.+.|.|.+.||+|||++|+.+++..++||.+..+.+.. +.+.-.|.|.-. +..++.+|-..|
T Consensus 657 W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~~L 729 (743)
T PRK10872 657 WGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLGKL 729 (743)
T ss_pred ecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHHHH
Confidence 7643 223456899999999999999999999999999999987753 444455555433 345667766665
Q ss_pred HH
Q 048063 202 TT 203 (484)
Q Consensus 202 ~~ 203 (484)
..
T Consensus 730 ~~ 731 (743)
T PRK10872 730 NQ 731 (743)
T ss_pred hc
Confidence 43
No 148
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.40 E-value=0.46 Score=37.46 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=44.2
Q ss_pred EEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 136 IEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 136 i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
+.+...|+||-|+++..+|+.+|+||.+...... +....-.|||.-. |. . +....+.+.+.|.+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~--~~-~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE--GH-I-DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE--CC-C-CCHHHHHHHHHHHH
Confidence 3455689999999999999999999999976653 3355567777764 42 1 12344555555544
No 149
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.08 E-value=0.37 Score=38.04 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=38.1
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC-CeeeeEEEEEcCCCC
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKG-EKSVNAFYLRDISGN 422 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g-~~a~d~F~v~~~~g~ 422 (484)
+-+...|+||-|++|-.+|+++|+||.+....-.. ....-.||+. -+|.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~ 51 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGH 51 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECC
Confidence 34556799999999999999999999999766443 4567788884 4453
No 150
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.78 E-value=2.7 Score=44.26 Aligned_cols=106 Identities=19% Similarity=0.310 Sum_probs=66.9
Q ss_pred CeEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVD---SVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~---~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+...|+|. ..+++|+++++..+|.++|+||..-.....+. --.|.|...+. ++..+.|++.+... .
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~--~Is~~V~~~d~-----~~a~~~L~~~~~~~----~ 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSET--SISLTVDETDA-----DEAVRALKDQSGAA----G 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCc--eEEEEEeHHHH-----HHHHHHHHHHHHhc----C
Confidence 45677777 67889999999999999999997433211111 12355532100 12233333332111 0
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEE
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVE 163 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~ 163 (484)
+ ..+. ...+...|.|.+. ++||+++++..+|++.|+||..
T Consensus 328 ~------~~i~-----~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 L------DRVE-----VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred C------ceEE-----EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 1 1122 2235778888874 7999999999999999999984
No 151
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.45 E-value=0.48 Score=53.63 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=51.3
Q ss_pred ecCCC-CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCe-eEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 125 FGSEY-PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDR-LACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 125 ~~~~~-~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~-~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
|+... ..-.+.|.|.+.||+|+|++|+.+++..++||.++.+.+..+. +.-.|.+.-. +..++.+|-..|.
T Consensus 617 W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~Lr 689 (702)
T PRK11092 617 WDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRKIR 689 (702)
T ss_pred ECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 76432 2345689999999999999999999999999999998776543 3344544432 3456666666554
No 152
>PRK07334 threonine dehydratase; Provisional
Probab=93.32 E-value=0.44 Score=50.38 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=47.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-----AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-----~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
+.|.|.+.||+|+|++|+.+|++.+.||.+....+. ++.+.-.|.|. +.+.+.++.+.+.|..
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999887653 56655555553 2234456666666654
No 153
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=93.22 E-value=0.34 Score=37.38 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=26.0
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEeeecCCe
Q 048063 379 NRVGLLSDITRVLRENGLAVVRAHVATKGEK 409 (484)
Q Consensus 379 DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~ 409 (484)
|+||+|..|+.+|...|+||.+..+......
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~ 31 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDP 31 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCC
Confidence 6899999999999999999999999874333
No 154
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.14 E-value=2.2 Score=44.97 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=67.6
Q ss_pred CceeEEEEE---eCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh-
Q 048063 290 KGYSIVSVD---CKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER- 365 (484)
Q Consensus 290 ~~~t~V~V~---~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r- 365 (484)
++...|.|. ..+++|+++++..+|.+.+++|..-........ -+|+|.. ...++..+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V~~---------~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTVDE---------TDADEAVRALKDQSGAA 326 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEEeH---------HHHHHHHHHHHHHHHhc
Confidence 345677777 578899999999999999999974332111111 2344422 1234444444444311
Q ss_pred -----cc-CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 048063 366 -----RV-CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAH 402 (484)
Q Consensus 366 -----r~-~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~ 402 (484)
.. .....|.|.+. ++||+++++.++|.+.||||....
T Consensus 327 ~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~ 372 (401)
T TIGR00656 327 GLDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG 372 (401)
T ss_pred CCceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 11 22467778885 799999999999999999998543
No 155
>PRK11899 prephenate dehydratase; Provisional
Probab=93.10 E-value=0.39 Score=48.35 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=44.2
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCChH
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVDMD 427 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~~~ 427 (484)
|.|-+...|+||.|+++-.+|+++|||+.+..-+-.+.+ .+=.||| |.+|..-++.
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~ 251 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRN 251 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHH
Confidence 556666689999999999999999999999998866544 5557888 6678654443
No 156
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.97 E-value=0.53 Score=36.56 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=39.8
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 40 VKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-AGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 40 I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
+.|.-|||||-|.+++.+++. |.||.+-.-... .+.+ .++....- .+++..+.|.+.|..
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~-~v~v~ie~-----~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEA-RVLVGIQV-----PDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCce-EEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 357889999999999999999 999998776332 2222 22332221 123466777777765
No 157
>PRK06635 aspartate kinase; Reviewed
Probab=92.91 E-value=1.3 Score=46.69 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=67.6
Q ss_pred ceeEEEEE-eCCCCchHHHHHHHHhhCCceEEEEEEEe-cCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH---Hh-
Q 048063 291 GYSIVSVD-CKDRPRLMFDTVCTLTDMQYVVFHASIGC-HGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA---IE- 364 (484)
Q Consensus 291 ~~t~V~V~-~~DrpgLl~~i~~~L~~~~l~I~~A~i~t-~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~---l~- 364 (484)
+...|.|. ..++||+++++..+|.+.|++|.....+. .+|+.--.|.+.. ...+...+.|.+. +.
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence 33444444 47889999999999999999999654422 2234444555532 1233333334331 11
Q ss_pred hc---cCCceEEEEEe---cCCcchHHHHHHHHHhCCceEEEEE
Q 048063 365 RR---VCEGVRLELCA---ANRVGLLSDITRVLRENGLAVVRAH 402 (484)
Q Consensus 365 rr---~~~~t~leV~a---~DRpGLL~~It~~f~~~gi~I~~A~ 402 (484)
+. ......++|.+ .++||++++|.++|.++||+|....
T Consensus 332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 00 11246688876 5899999999999999999998864
No 158
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.89 E-value=0.65 Score=52.54 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=50.9
Q ss_pred ecCC-CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 125 FGSE-YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 125 ~~~~-~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
|+.. ...-.+.|.|.+.||+|+|++|+.+++..++||.+..+.+.. +.+.-.|.|.-. +..++.+|-..|.
T Consensus 601 W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~L~ 673 (683)
T TIGR00691 601 WNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLKIK 673 (683)
T ss_pred ecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 7543 223466899999999999999999999999999999988764 333334444332 3456666666554
No 159
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.86 E-value=0.46 Score=37.93 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=39.6
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCC
Q 048063 373 LELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNE 423 (484)
Q Consensus 373 leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~ 423 (484)
+-+...|+||-|+++-..|+.+|||+.+.+.+..... .+=.||| |-+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence 4455689999999999999999999999998866444 5567887 445654
No 160
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.74 E-value=0.72 Score=35.80 Aligned_cols=60 Identities=25% Similarity=0.250 Sum_probs=40.0
Q ss_pred EEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 137 EMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 137 ~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
.|.-+||||-|.+++.+++. |.||...+=.-.+.....++..-.. .+++..+.+.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 56789999999999999999 9999887644333223333333222 124566777776654
No 161
>PRK06635 aspartate kinase; Reviewed
Probab=92.64 E-value=3.6 Score=43.42 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=66.9
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccc
Q 048063 38 TVVKVD-SVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAV 115 (484)
Q Consensus 38 t~I~V~-~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~ 115 (484)
..|++. ..++||.++++..+|++.|+||.-...+. .+|..--.|.|...+. +...+.|++ +... +.
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~-----~~- 330 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDE-----IG- 330 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHH-----cC-
Confidence 344443 57889999999999999999999543322 3334444466542111 112222332 1111 10
Q ss_pred cccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 116 AKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 116 ~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
...+. + ..+...+.|.+ +|+||.++++..+|+++|+||....
T Consensus 331 ---~~~i~-~----~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 331 ---AESVT-Y----DDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred ---cceEE-E----cCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 11232 2 23567788876 6999999999999999999998753
No 162
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.50 E-value=1 Score=35.70 Aligned_cols=48 Identities=6% Similarity=0.138 Sum_probs=38.0
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ 182 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~ 182 (484)
.|.+..+|+||-|+++-..|+.+|+|+..-..... +....=.|||.-.
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 45566689999999999999999999998887653 3445567888765
No 163
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.46 E-value=0.84 Score=51.87 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=53.1
Q ss_pred EEEecC-CCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCeEEEEEEEeeCCCCCCCcHHHHHHHHHH
Q 048063 27 VCIDNE-SMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD--AGWFMDVFHVKDEHGNKLTDQKVINYIQQA 103 (484)
Q Consensus 27 V~i~~~-~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~--~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~ 103 (484)
|.|+.. ...-...|.|.+.||+|||++|+.+++..++||.+..+.+. ++.+.-.|.|. +.+-+.+..+...
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie------V~~~~~L~~l~~~ 728 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE------IYNLQVLGRVLGK 728 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE------ECCHHHHHHHHHH
Confidence 456432 11223588899999999999999999999999999998664 57766666654 2234466777666
Q ss_pred Hcc
Q 048063 104 IGT 106 (484)
Q Consensus 104 L~~ 106 (484)
|..
T Consensus 729 L~~ 731 (743)
T PRK10872 729 LNQ 731 (743)
T ss_pred Hhc
Confidence 654
No 164
>PRK06291 aspartate kinase; Provisional
Probab=92.30 E-value=6.2 Score=42.61 Aligned_cols=111 Identities=15% Similarity=0.249 Sum_probs=70.6
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+...|+|.+. +.+|+++++.++|+++|+||.-....+..- --.|.|...+ . +...+.|.+.+....
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~--sIsf~V~~~d---~--~~av~~L~~~~~~~~---- 388 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSES--NISLVVDEAD---L--EKALKALRREFGEGL---- 388 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCc--eEEEEEeHHH---H--HHHHHHHHHHHHHhc----
Confidence 4567777754 689999999999999999998644333221 1135554211 0 123344444443210
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
...++ + ..+...|.|.+. +++|+++++..+|...|+||......+
T Consensus 389 ------~~~i~-~----~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 389 ------VRDVT-F----DKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS 436 (465)
T ss_pred ------CcceE-E----eCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence 11233 2 235677888875 799999999999999999998554333
No 165
>PRK08210 aspartate kinase I; Reviewed
Probab=92.09 E-value=5.5 Score=42.03 Aligned_cols=99 Identities=19% Similarity=0.321 Sum_probs=65.4
Q ss_pred CeEEEEEEecCC-CcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCcc
Q 048063 36 DCTVVKVDSVSK-QGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSA 114 (484)
Q Consensus 36 ~~t~I~V~~~Dr-pGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~ 114 (484)
+...|+|...+. +|.++++...|+++|+||.-...+ ... -.|.+.. +..+.+.+.|.... +
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~-~~~---is~~v~~---------~~~~~a~~~l~~~~----~- 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF-PTE---VVFTVSD---------EDSEKAKEILENLG----L- 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec-Cce---EEEEEcH---------HHHHHHHHHHHHhC----C-
Confidence 455677766555 999999999999999999865333 221 2355532 12233344443321 1
Q ss_pred ccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEE
Q 048063 115 VAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVE 163 (484)
Q Consensus 115 ~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~ 163 (484)
.+. + ..+...|.|.+. ++||+++++..+|++.|+||..
T Consensus 332 ------~v~-~----~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 ------KPS-V----RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred ------cEE-E----eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 122 2 224677777774 8999999999999999999974
No 166
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=92.01 E-value=0.68 Score=51.96 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=51.7
Q ss_pred ecCCC-CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEE-EEEEeCCCCCCCCChhHHHHHHHHHH
Q 048063 125 FGSEY-PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACV-AYVSDQSTDTPIDDPGRLATIEEYIT 202 (484)
Q Consensus 125 ~~~~~-~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dv-F~V~~~~~g~~i~d~~~~~~l~~~L~ 202 (484)
|+.+. ..-.+.|.|.+.||+|||++|+.+|+..++||.+....+..++...+ |.+.- .+...+.+|-..|.
T Consensus 618 W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~ 690 (701)
T COG0317 618 WGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK 690 (701)
T ss_pred ecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence 77663 45678999999999999999999999999999999988764444433 32322 23456666655544
No 167
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.85 E-value=0.51 Score=43.34 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=38.0
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEe
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~ 181 (484)
-+.+.+.++||.|.++++.++++|.||..|+.+..++.-....|..-
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 46788999999999999999999999999999986654343444443
No 168
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.84 E-value=0.73 Score=44.27 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=43.7
Q ss_pred CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHH
Q 048063 369 EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVES 431 (484)
Q Consensus 369 ~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~ 431 (484)
..+.+-+.-.||||.+..|+.+|.++||||....+.... +.|--+.-+ .++++++.+++
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~ 207 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA 207 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence 356788888999999999999999999999999998654 334333333 34556665543
No 169
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.74 E-value=0.64 Score=44.66 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=42.8
Q ss_pred CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEE
Q 048063 128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYV 179 (484)
Q Consensus 128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V 179 (484)
+-.+....+.+.-.|+||.+..|+.+|.++|+||...++... ++.+.-+..+
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 445567788888999999999999999999999999999873 4556655554
No 170
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.49 E-value=0.89 Score=35.16 Aligned_cols=46 Identities=28% Similarity=0.394 Sum_probs=35.8
Q ss_pred CeEEEEEEec----CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeC
Q 048063 132 EHTAIEMTGT----DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQ 182 (484)
Q Consensus 132 ~~t~i~V~~~----DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~ 182 (484)
+...|.|.+. |.||+++++...|++.|+||.... |+. .|.|.|...
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~~---~~~ilV~~~ 54 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SEI---SISILVKEE 54 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ESS---EEEEEEEGG
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Eee---eEEEEEeHH
Confidence 5677888887 899999999999999999998776 444 566666543
No 171
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=91.33 E-value=1.5 Score=49.64 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=52.7
Q ss_pred EEEecCCCC-CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHH
Q 048063 27 VCIDNESME-DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-AGWFMDVFHVKDEHGNKLTDQKVINYIQQAI 104 (484)
Q Consensus 27 V~i~~~~~~-~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L 104 (484)
|.|+..... -.+.|.|.+.||+|++++|+.+++..++||.+....+. ++.+.-.|.+. +.+-+.+..|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT------ARDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence 456543222 23588899999999999999999999999999998664 46655556554 22345667777666
Q ss_pred cc
Q 048063 105 GT 106 (484)
Q Consensus 105 ~~ 106 (484)
..
T Consensus 689 r~ 690 (702)
T PRK11092 689 RV 690 (702)
T ss_pred hC
Confidence 54
No 172
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=90.79 E-value=0.51 Score=36.52 Aligned_cols=43 Identities=12% Similarity=0.312 Sum_probs=33.5
Q ss_pred eEEEEEec----CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEc
Q 048063 371 VRLELCAA----NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418 (484)
Q Consensus 371 t~leV~a~----DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~ 418 (484)
..|.|.+. |.||+++.++..|++.||+|.... |+ -.+.|+|..
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~ 53 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE 53 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence 45677766 799999999999999999999887 33 466777754
No 173
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=90.46 E-value=1.8 Score=48.98 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred EEEecC-CCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCeEEEEEEEeeCCCCCCCcHHHHHHHHHHH
Q 048063 27 VCIDNE-SMEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSD-AGWFMDVFHVKDEHGNKLTDQKVINYIQQAI 104 (484)
Q Consensus 27 V~i~~~-~~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~-~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L 104 (484)
|.|... +..-.+.|.|.+.||+|+|++|+.+++..+.||.+..+.+. ++.+.-.|.|. +.+-+.+..|...|
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie------V~~~~~L~~ii~~L 672 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE------IKNYKHLLKIMLKI 672 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE------ECCHHHHHHHHHHH
Confidence 456533 22224588899999999999999999999999999998664 56655455553 22344666666666
Q ss_pred cc
Q 048063 105 GT 106 (484)
Q Consensus 105 ~~ 106 (484)
..
T Consensus 673 ~~ 674 (683)
T TIGR00691 673 KT 674 (683)
T ss_pred hC
Confidence 54
No 174
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.39 E-value=0.56 Score=49.81 Aligned_cols=61 Identities=23% Similarity=0.397 Sum_probs=50.1
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKK 434 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~ 434 (484)
++.|-+.-.|+||.++.|+.+|.++||||...+..+.|+.|--+|-+ ++ +++++.+++|++
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~~ 398 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALKA 398 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHHc
Confidence 58888999999999999999999999999999998888666655555 44 455667777764
No 175
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.21 E-value=2.9 Score=33.30 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=38.3
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ 182 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~ 182 (484)
.+.+..+|+||-|+++-..|+.+|+|+........ +....-.|||.-.
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e 50 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE 50 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 34556689999999999999999999998887763 4445667888765
No 176
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.10 E-value=1.2 Score=38.72 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=41.6
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeee-eEEEEEcCCCCC
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSV-NAFYLRDISGNE 423 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~-d~F~v~~~~g~~ 423 (484)
+.|-+...|+||-|++|-..|+.+|||+.+.+.+.....-+ =.||| |.+|..
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 55667779999999999999999999999999887765544 46666 555653
No 177
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=90.08 E-value=0.73 Score=45.07 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=46.9
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEE--EEEEEeCCCCCCCCChhHHHHHHHHHHHHh
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLAC--VAYVSDQSTDTPIDDPGRLATIEEYITTVL 205 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~d--vF~V~~~~~g~~i~d~~~~~~l~~~L~~~L 205 (484)
...+|.+.-.|.||.+++|+++|+..|.||.+.-+--....+.- +..++.. ...+++.++.|++..
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gt--------d~VveQa~rQiedlV 143 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGT--------DGVVEQARRQIEDLV 143 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEecc--------HHHHHHHHHHHHHhh
Confidence 46688889999999999999999999999999887643333332 3333332 245566667666654
No 178
>PRK11899 prephenate dehydratase; Provisional
Probab=89.80 E-value=2.6 Score=42.47 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=42.2
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ 182 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~ 182 (484)
.|.|-+..+|+||.|+++-.+|+.+|+|+.+...... +....=+|||.-.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e 244 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE 244 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE
Confidence 5777778899999999999999999999999887764 4446678998875
No 179
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.43 E-value=1.3 Score=46.02 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEe
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~ 181 (484)
-+.++.|.|.-+||||-+++|+..|...|+||.+.+|.-..+...-++.+..
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 4578999999999999999999999999999999999765544444444443
No 180
>PRK06382 threonine dehydratase; Provisional
Probab=89.35 E-value=2.1 Score=45.32 Aligned_cols=67 Identities=22% Similarity=0.163 Sum_probs=47.6
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE----e-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW----S-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~----T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
....+.+.|.-+|+||-|.+++.+|.++|+||.+.... . ..+...-+|.|... +++..+.|.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999887654 1 12334455555443 23444566666554
No 181
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=89.25 E-value=1.5 Score=44.04 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=44.2
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCCCC
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNEVD 425 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~l~ 425 (484)
.|.|=+...|+||-|+++-.+|+.+|||+.+..-+-.+.. .+=+||| |-+|..-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCc
Confidence 4667777789999999999999999999999998865555 5557777 66676644
No 182
>PRK08210 aspartate kinase I; Reviewed
Probab=88.73 E-value=4.9 Score=42.47 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=75.7
Q ss_pred CceeEEEEEeCCC-CchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--c
Q 048063 290 KGYSIVSVDCKDR-PRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--R 366 (484)
Q Consensus 290 ~~~t~V~V~~~Dr-pgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r 366 (484)
++...|.|.+.+. ||.++++...|.+.|+||.....+. .. -+|.+.. ...+++.+.|.+. .. .
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~~---is~~v~~---------~~~~~a~~~l~~~-~~~v~ 334 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-TE---VVFTVSD---------EDSEKAKEILENL-GLKPS 334 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-ce---EEEEEcH---------HHHHHHHHHHHHh-CCcEE
Confidence 3455677776555 9999999999999999999764331 11 1344422 1233333333331 10 1
Q ss_pred c-CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 367 V-CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 367 ~-~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
. .....|.|.+. ++||+++++..+|.+.||+|.. +.| ....-.|.+...+. ...++.|.+++
T Consensus 335 ~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~--s~~~is~vv~~~~~----~~a~~~Lh~~f 400 (403)
T PRK08210 335 VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SAD--SHTTIWVLVKEEDM----EKAVNALHDAF 400 (403)
T ss_pred EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--Eec--CCCEEEEEEcHHHH----HHHHHHHHHHh
Confidence 1 22567778885 7999999999999999999975 333 12233455543211 22445566555
No 183
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=88.68 E-value=1.5 Score=40.47 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=36.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCC-eEEEEEEE
Q 048063 39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAG-WFMDVFHV 83 (484)
Q Consensus 39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g-~~~d~F~V 83 (484)
-+.+.+.|+||.+.+++++++++|.||.-|+... .+| ..+--|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 5788999999999999999999999999999754 555 44433333
No 184
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=88.24 E-value=0.31 Score=39.87 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=28.3
Q ss_pred EEEEEecC-CCcHHHHHHHHHHhCCceEEEEE
Q 048063 39 VVKVDSVS-KQGLLLEMVQVLTDMNLTISKSY 69 (484)
Q Consensus 39 ~I~V~~~D-rpGLfa~ia~vL~~~glnI~~A~ 69 (484)
.|||.++| ..|++++++++|+++|+||.+-+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 48999999 99999999999999999998644
No 185
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.97 E-value=1 Score=47.85 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=42.4
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEE
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYV 179 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V 179 (484)
....|.+.-.|+||.++.|+.+|+++|+||...++.+.++.+.-+|-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 567788899999999999999999999999999998888777766654
No 186
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=87.84 E-value=2.1 Score=45.16 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=43.6
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC-CeeeeEEEEEcCCCCCCCh
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG-EKSVNAFYLRDISGNEVDM 426 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g-~~a~d~F~v~~~~g~~l~~ 426 (484)
|.|-+...|+||.|+++-..|+.+|||+.+..-+-.+ ...+=.||| |.+|..-++
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~ 353 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSA 353 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCH
Confidence 4566667899999999999999999999999988544 446668888 667865444
No 187
>PRK09034 aspartate kinase; Reviewed
Probab=87.68 E-value=19 Score=38.72 Aligned_cols=138 Identities=15% Similarity=0.122 Sum_probs=80.3
Q ss_pred CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVDS---VSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~~---~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+.+.|++.. .+++|+++++..+|+++|+||.-- ++ +. .--.|.|.+.+-. ...+..+.+.|...
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~s-s~-~sis~~v~~~~~~----~a~~~~l~~el~~~----- 373 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PS-GI-DDLSIIIRERQLT----PKKEDEILAEIKQE----- 373 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cC-CC-cEEEEEEeHHHhh----HHHHHHHHHHHHHh-----
Confidence 345666664 678999999999999999999864 22 11 2224666532110 00112333223221
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCC
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPID 189 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~ 189 (484)
+. ...+. + ..+...|.+.+ .++||+++++..+|+++|+||......+.. .--.|.|..
T Consensus 374 ~~----~~~I~-~----~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se--~~Is~vV~~-------- 434 (454)
T PRK09034 374 LN----PDELE-I----EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE--ISIMFGVKN-------- 434 (454)
T ss_pred hC----CceEE-E----eCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc--ceEEEEEcH--------
Confidence 10 11232 2 23567788865 489999999999999999999877543322 222344432
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 048063 190 DPGRLATIEEYITTVLRA 207 (484)
Q Consensus 190 d~~~~~~l~~~L~~~L~g 207 (484)
....+..+.|++.+-+
T Consensus 435 --~d~~~av~~LH~~f~~ 450 (454)
T PRK09034 435 --EDAEKAVKAIYNAFFK 450 (454)
T ss_pred --HHHHHHHHHHHHHHhc
Confidence 2234555666666643
No 188
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.61 E-value=4.3 Score=32.99 Aligned_cols=61 Identities=21% Similarity=0.235 Sum_probs=36.5
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
++.|.-+|+||=|++++.+|+ +.||....-.- ..+.+.-.+.+... ++ ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc-----HHHHHHHHHHHHH
Confidence 577888999999999999999 55665433222 22333333333333 11 3455666666554
No 189
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=86.93 E-value=2.3 Score=39.23 Aligned_cols=67 Identities=15% Similarity=0.247 Sum_probs=48.0
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
..++.+.-.|.||.|+++++.|+..|+||.+..+.- ......-+-.|.. | |+...+++...|.+...
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhcc
Confidence 346777889999999999999999999999998874 4444333333333 2 23566778777777553
No 190
>PRK06291 aspartate kinase; Provisional
Probab=86.74 E-value=16 Score=39.55 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=79.6
Q ss_pred CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh-
Q 048063 290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER- 365 (484)
Q Consensus 290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r- 365 (484)
++...|.|.+. +.+|+++++..+|.+.|++|......+.... -+|.|.. ...+...+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~---------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDE---------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence 35567788764 7899999999999999999986543322211 1244432 1233333444444321
Q ss_pred c------cCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeee-EEEEEcCCCCCCChHHHHHHHHH
Q 048063 366 R------VCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN-AFYLRDISGNEVDMDFVESMKKE 435 (484)
Q Consensus 366 r------~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d-~F~v~~~~g~~l~~~~~~~l~~~ 435 (484)
. ......|.|.+. +++|+++++..+|.+.||+|.... +|..... .|.|...+ .+..++.|..+
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV~~~d----~~~av~~Lh~~ 460 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVVDEED----GERAVKVLHDE 460 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEEeHHH----HHHHHHHHHHH
Confidence 1 122577888886 799999999999999999998655 3333333 35553221 12344556555
Q ss_pred h
Q 048063 436 I 436 (484)
Q Consensus 436 L 436 (484)
+
T Consensus 461 f 461 (465)
T PRK06291 461 F 461 (465)
T ss_pred h
Confidence 5
No 191
>PRK09034 aspartate kinase; Reviewed
Probab=86.72 E-value=14 Score=39.74 Aligned_cols=132 Identities=12% Similarity=0.164 Sum_probs=78.6
Q ss_pred ceeEEEEEe---CCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh-h-
Q 048063 291 GYSIVSVDC---KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE-R- 365 (484)
Q Consensus 291 ~~t~V~V~~---~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~-r- 365 (484)
+.+.|.+.+ .+++|+++++...|++.|++|.-- . .+. .--+|++...+-. ...+..+.+.|...+. .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-ss~-~sis~~v~~~~~~----~a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-SGI-DDLSIIIRERQLT----PKKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-CCC-cEEEEEEeHHHhh----HHHHHHHHHHHHHhhCCce
Confidence 445666664 678999999999999999999874 2 211 2124555442210 0011333333433321 0
Q ss_pred -cc-CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 366 -RV-CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 366 -r~-~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
.. ..-..|.+.+. ++||+++++-.+|.++||+|....-.+. + ..=.|.|.+.+. ....+.|.+++
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S-e-~~Is~vV~~~d~----~~av~~LH~~f 448 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS-E-ISIMFGVKNEDA----EKAVKAIYNAF 448 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC-c-ceEEEEEcHHHH----HHHHHHHHHHH
Confidence 01 12467888654 7899999999999999999998864332 1 222455643211 22455666666
No 192
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.52 E-value=4.9 Score=32.64 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=39.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccC
Q 048063 39 VVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTT 107 (484)
Q Consensus 39 ~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~ 107 (484)
.+.|.-||+||-|++++.+|+ +.||.+..... ..+.+--.+.+...++ ++..+.+.+.|.+.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~~ 65 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKSA 65 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHHC
Confidence 578889999999999999999 77888655422 2233332233332211 34567777777654
No 193
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=86.50 E-value=25 Score=40.87 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=72.0
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+.+.|+|.+. +++|+++++..+|+++|+||.-...++. .. --.|.|...+. +...+.|.+.+........
T Consensus 314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssS-e~-sIsf~V~~~d~-----~~av~~L~~~f~~el~~~~ 386 (819)
T PRK09436 314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSS-EY-SISFCVPQSDA-----AKAKRALEEEFALELKEGL 386 (819)
T ss_pred CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCC-Cc-eEEEEEeHHHH-----HHHHHHHHHHHHHHhccCC
Confidence 5667888754 6899999999999999999975443332 22 12355543111 1233444444322110001
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
...++ + ..+...|.|.+. ++||+++++..+|.+.|+||....-.+
T Consensus 387 ------~~~i~-~----~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs 434 (819)
T PRK09436 387 ------LEPLE-V----EENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS 434 (819)
T ss_pred ------cceEE-E----eCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence 11233 2 235778888875 789999999999999999998765333
No 194
>PRK06349 homoserine dehydrogenase; Provisional
Probab=86.40 E-value=2.8 Score=44.76 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=45.9
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
.|.|.+...|+||.|+.|+.+|.+++++|.+..-.........++++++.- +....+++..+|
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L 410 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAI 410 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHH
Confidence 588999999999999999999999999999886554333455667776531 233444444555
No 195
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=86.34 E-value=4.2 Score=45.87 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=52.2
Q ss_pred EEEEecCC-CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHH
Q 048063 26 RVCIDNES-MEDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQA 103 (484)
Q Consensus 26 ~V~i~~~~-~~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~ 103 (484)
.|.+.... ..-.+.|.|.+.||+|+|++++.+|+..+.||......+ .++.+.-.|.+. +.+-..+..|...
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~ 688 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLAR 688 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHH
Confidence 34555553 234469999999999999999999999999999988755 444444334443 2223456666666
Q ss_pred HccC
Q 048063 104 IGTT 107 (484)
Q Consensus 104 L~~~ 107 (484)
|...
T Consensus 689 l~~~ 692 (701)
T COG0317 689 LKQL 692 (701)
T ss_pred HhcC
Confidence 6543
No 196
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=86.08 E-value=4.7 Score=40.51 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=43.1
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeC
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQ 182 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~ 182 (484)
..|.|-+..+|+||-|+++-++|+.+|||........ .+....=.|||.-.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~e 244 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIE 244 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEe
Confidence 5888888999999999999999999999999888765 44556678888765
No 197
>PRK08818 prephenate dehydrogenase; Provisional
Probab=85.98 E-value=1.6 Score=45.77 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=38.1
Q ss_pred ceEEEEEec-CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063 370 GVRLELCAA-NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR 417 (484)
Q Consensus 370 ~t~leV~a~-DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~ 417 (484)
.+.+.+.-. |+||.|++|+.+|+++||||.+..+ ......+-.|+|.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~ 342 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIG 342 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEE
Confidence 577788885 9999999999999999999999998 3333344458884
No 198
>PRK08818 prephenate dehydrogenase; Provisional
Probab=85.52 E-value=1.9 Score=45.15 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=39.7
Q ss_pred CeEEEEEEec-CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeC
Q 048063 132 EHTAIEMTGT-DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQ 182 (484)
Q Consensus 132 ~~t~i~V~~~-DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~ 182 (484)
..+.|.+.-+ |+||-|++|+.+|+.+|+||.+-.+ .......-.|+|.-.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 5778888886 9999999999999999999999998 333223333888765
No 199
>PLN02551 aspartokinase
Probab=85.49 E-value=46 Score=36.59 Aligned_cols=139 Identities=7% Similarity=0.138 Sum_probs=80.0
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHH-HHHHHHccCCCCC
Q 048063 36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVIN-YIQQAIGTTGEIP 111 (484)
Q Consensus 36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~-~L~~~L~~~~~~~ 111 (484)
+.+.|+|.+. +.+|.++++...|.++|++|.-- ++.. .--.|.|...+-. ..+.++ .+++.+.+..
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~---~~~~i~~~l~~l~~el~--- 434 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLW---SRELIQQELDHLVEELE--- 434 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhh---hhhhHHHHHHHHHHHhh---
Confidence 4567777655 68999999999999999999854 2222 1223565432111 011111 1222221110
Q ss_pred CccccccccceeeecCCCCCCeEEEEEEec--CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCC
Q 048063 112 SSAVAKTYTNKAVFGSEYPSEHTAIEMTGT--DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPID 189 (484)
Q Consensus 112 ~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~--DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~ 189 (484)
.+ ..+. +. .+...|.|.+. ..||+++++..+|+..|+||......+.. ..+-.|.+.
T Consensus 435 ~~------~~V~-v~----~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSe---inIS~vV~~------- 493 (521)
T PLN02551 435 KI------AVVN-LL----QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASK---VNISLIVND------- 493 (521)
T ss_pred cC------CeEE-Ee----CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCC---cEEEEEEeH-------
Confidence 11 1233 22 35667777754 68999999999999999999877644322 333333332
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 048063 190 DPGRLATIEEYITTVLRA 207 (484)
Q Consensus 190 d~~~~~~l~~~L~~~L~g 207 (484)
...++.-++|++.+-+
T Consensus 494 --~d~~~Av~aLH~~Ff~ 509 (521)
T PLN02551 494 --DEAEQCVRALHSAFFE 509 (521)
T ss_pred --HHHHHHHHHHHHHHhc
Confidence 2345556667766643
No 200
>PRK06349 homoserine dehydrogenase; Provisional
Probab=85.12 E-value=4 Score=43.57 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=42.7
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeC
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQ 182 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~ 182 (484)
....+.|.+...|+||.|++|+++|.++++||.+.......+....++++++.
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 34567889999999999999999999999999988765444455677777775
No 201
>PRK12483 threonine dehydratase; Reviewed
Probab=85.01 E-value=45 Score=36.69 Aligned_cols=134 Identities=14% Similarity=0.137 Sum_probs=74.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHH-HHHHHHHccCC-CCCC
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVI-NYIQQAIGTTG-EIPS 112 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~-~~L~~~L~~~~-~~~~ 112 (484)
....+.|.-+||||-|.+++.+|... ||.+-.... ..+. ..++....-.+ .+.. +.|.+.|.... ....
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeEE
Confidence 44678899999999999999999988 898777643 2233 33343333222 2333 67777775532 0000
Q ss_pred ccccc-ccccee-eecCC--CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEE
Q 048063 113 SAVAK-TYTNKA-VFGSE--YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAY 178 (484)
Q Consensus 113 ~~~~~-~~~~v~-v~~~~--~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~ 178 (484)
+.... .+..+. .+.-. ....--.+.|.-+.|||-|.+.+..|... .||..-+=.-.+.....+|.
T Consensus 416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~v 484 (521)
T PRK12483 416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLA 484 (521)
T ss_pred CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEE
Confidence 00000 000000 01101 12245678888899999999999999852 34433332223444445554
No 202
>PRK08198 threonine dehydratase; Provisional
Probab=84.88 E-value=6.9 Score=41.30 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW 167 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~ 167 (484)
......+.|.-+|+||-|+++..+++.+|.||.+....
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 44566899999999999999999999999999988765
No 203
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.35 E-value=3.9 Score=35.57 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=39.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-CeeEEEEEEEeC
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-DRLACVAYVSDQ 182 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-~~~~dvF~V~~~ 182 (484)
.+.+.+..+|+||-|+++-..|+.+|+|+......... ....=.|||.-.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 46777777999999999999999999999988876643 334456777654
No 204
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=83.74 E-value=7.8 Score=40.52 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=44.4
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-----cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-----HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-----~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
....+.|.-+||||.|++++..++++|.||.+..-.. ..+.+.-.+.+... +++..+.|.+.|.+
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILRD 373 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 4458999999999999999999999999998885431 12333334444332 13455566666544
No 205
>PRK09181 aspartate kinase; Validated
Probab=83.64 E-value=40 Score=36.64 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=67.5
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+.+.|+|.+. +.+|+.+++.++|.++|++|. -+.+.. .--.|.|.+. . ...+.+.+.|...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~----- 391 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKR----- 391 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHh-----
Confidence 4567777543 689999999999999999997 333322 1223555431 1 1223333334321
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEecC--CCchHHHHHHHHHhCCCeEEEEEE
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGTD--RPGLFSEISAALADLHCNIVEAHA 166 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~D--rpGLL~~Ia~vL~~~glnI~~A~i 166 (484)
+. ...+. ..+...|.|.+.. +||+.+++..+|++.|+||..-..
T Consensus 392 ~~----~~~i~------~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 392 YP----NAEVT------VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred cC----CceEE------ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 21 01121 1457788888754 899999999999999999987653
No 206
>PRK06545 prephenate dehydrogenase; Validated
Probab=82.89 E-value=4.2 Score=42.32 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=39.9
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEE
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYL 416 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v 416 (484)
.|.|.|.-.||||-|+.|+..+.+.||||.+.+|.-..+...-++.+
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~ 336 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI 336 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence 59999999999999999999999999999999997555554444554
No 207
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=82.85 E-value=67 Score=34.34 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=64.9
Q ss_pred CeEEEEEEecCC--CcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCc
Q 048063 36 DCTVVKVDSVSK--QGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSS 113 (484)
Q Consensus 36 ~~t~I~V~~~Dr--pGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~ 113 (484)
+...|+|.+.+- +|.++++...|.++|++|.-....+.. .. -.|.|...+. +...+.|.. +.... .
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~-~~~~~---~- 368 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKS-ELNLS---A- 368 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHH-HHHhc---C-
Confidence 345666664332 799999999999999999855432322 11 2355542110 112222211 11110 0
Q ss_pred cccccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 114 AVAKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 114 ~~~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
...+. + ..+.+.|.|.+ .++||+++++...|+.+|+||....
T Consensus 369 -----~~~I~-~----~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 -----LSSVE-V----EKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred -----cceEE-E----cCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 12233 2 23567888865 4889999999999999999997765
No 208
>PRK06382 threonine dehydratase; Provisional
Probab=82.59 E-value=6.6 Score=41.58 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=47.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-----ecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYIS-----SDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~It-----t~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
..+.+.|..+|+||-|++++.+|.++|+||.+-... ...+...-+|.|... + ++..+.|.+.|.+
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHH
Confidence 457899999999999999999999999999977653 234555555666432 1 2344566666654
No 209
>PRK09181 aspartate kinase; Validated
Probab=82.06 E-value=16 Score=39.65 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=69.5
Q ss_pred ceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--
Q 048063 291 GYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER-- 365 (484)
Q Consensus 291 ~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r-- 365 (484)
+.+.|.|.+. +.+|+.+++..+|.+.+++|. -+.+.. .--+|.|... . ...+++.+.|.+.+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcCCce
Confidence 5667777554 789999999999999999997 233322 1123555332 1 2345555555554410
Q ss_pred -ccCCceEEEEEecC--CcchHHHHHHHHHhCCceEEEEEe
Q 048063 366 -RVCEGVRLELCAAN--RVGLLSDITRVLRENGLAVVRAHV 403 (484)
Q Consensus 366 -r~~~~t~leV~a~D--RpGLL~~It~~f~~~gi~I~~A~i 403 (484)
.......|.|++.. +||+.+.+..+|.+.||||....-
T Consensus 397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 12335778888864 899999999999999999987664
No 210
>PLN02317 arogenate dehydratase
Probab=81.28 E-value=5.9 Score=41.61 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=41.8
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe---------------eeeEEEEEcCCCCCCC
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK---------------SVNAFYLRDISGNEVD 425 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~---------------a~d~F~v~~~~g~~l~ 425 (484)
|.|-+.-.|+||.|+++-.+|+.+|||+.+.+-+-...+ -+=.||| |-+|..-+
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d 352 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMAD 352 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCC
Confidence 567777789999999999999999999999997765433 3447888 55675433
No 211
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=81.19 E-value=26 Score=32.40 Aligned_cols=110 Identities=13% Similarity=0.169 Sum_probs=62.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE-EecCCe-EEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCCccc
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI-SSDAGW-FMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPSSAV 115 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I-tt~~g~-~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~~~~ 115 (484)
-.+.+.-.|.||.+.++++.|+..|+||.+--+ .|++.. .--++.+. |. +...++|.+-|....+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLid------ 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLID------ 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhcc------
Confidence 467888999999999999999999999998876 564333 33223332 21 2355666655544321
Q ss_pred cccccceeeecCC--CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 116 AKTYTNKAVFGSE--YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 116 ~~~~~~v~v~~~~--~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
++.-+. +..+ -...-..+.+.+.-- ...++.+.-...+.+|.+..
T Consensus 72 --V~kV~d-~~~~~~veRel~LiKv~~~~~--~R~ei~~~~~ifr~~vvDvs 118 (163)
T COG0440 72 --VLKVLD-LTSEPHVERELALIKVSAEGS--ERGEIARITEIFRASVVDVS 118 (163)
T ss_pred --ceeEEE-cCCcchhheeeEEEEEecCcc--chHHHHHHHHHhCceEEecC
Confidence 111111 1111 112233444444222 25567777777777776654
No 212
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=81.16 E-value=18 Score=41.94 Aligned_cols=102 Identities=9% Similarity=0.158 Sum_probs=68.4
Q ss_pred CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHH---
Q 048063 290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAI--- 363 (484)
Q Consensus 290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l--- 363 (484)
++.+.|.|.+. ++||+++++..+|.+.|++|.-...++.. .. -+|.|... ..+...+.|.+.+
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~s-Isf~V~~~---------d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YS-ISFCVPQS---------DAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ce-EEEEEeHH---------HHHHHHHHHHHHHHHH
Confidence 45678888764 78999999999999999999655433222 11 13444332 2233333344333
Q ss_pred -hh-cc------CCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 048063 364 -ER-RV------CEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAH 402 (484)
Q Consensus 364 -~r-r~------~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~ 402 (484)
.. .. .....|.|.+. ++||+++++..+|.+.||+|....
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 21 11 22577888886 789999999999999999998665
No 213
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.93 E-value=3.7 Score=45.11 Aligned_cols=61 Identities=15% Similarity=0.361 Sum_probs=45.8
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVESMKK 434 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~l~~ 434 (484)
.+.+=+.-.|+||.+..|+..|.+++|||...++.... +.+--+|-+ .++++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence 45566677999999999999999999999999987643 333333333 44667788888875
No 214
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.83 E-value=3.2 Score=45.56 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=40.9
Q ss_pred CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe--cCCeeEEEEEE
Q 048063 128 EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS--HNDRLACVAYV 179 (484)
Q Consensus 128 ~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T--~~~~~~dvF~V 179 (484)
+-.+....+.+...|+||.+..|+.+|.++++||...++.- .++.+.-++.+
T Consensus 447 ~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 447 DAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred EeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 34456677777889999999999999999999999999876 34455555543
No 215
>PLN02551 aspartokinase
Probab=79.61 E-value=30 Score=38.07 Aligned_cols=133 Identities=14% Similarity=0.166 Sum_probs=79.5
Q ss_pred CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh-
Q 048063 290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER- 365 (484)
Q Consensus 290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r- 365 (484)
.+.+.|.|.+. +.+|.++++...|.+.|++|.-- ++... --+|.+...+-. ..+.+++..+.+...+.+
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe~--sIs~~v~~~~~~---~~~~i~~~l~~l~~el~~~ 436 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEV--SISLTLDPSKLW---SRELIQQELDHLVEELEKI 436 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccCC--EEEEEEehhHhh---hhhhHHHHHHHHHHHhhcC
Confidence 45567788665 68999999999999999999865 22221 123555432211 111122112122222321
Q ss_pred -c---cCCceEEEEEec--CCcchHHHHHHHHHhCCceEEEEEeeecCCeeee-EEEEEcCCCCCCChHHHHHHHHHh
Q 048063 366 -R---VCEGVRLELCAA--NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN-AFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 366 -r---~~~~t~leV~a~--DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d-~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
. ......|.|.+. .+||+++++-.+|.+.||+|......+ .... .|.|.+.+. ...++.|.+++
T Consensus 437 ~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga---SeinIS~vV~~~d~----~~Av~aLH~~F 507 (521)
T PLN02551 437 AVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA---SKVNISLIVNDDEA----EQCVRALHSAF 507 (521)
T ss_pred CeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC---CCcEEEEEEeHHHH----HHHHHHHHHHH
Confidence 1 122466777764 689999999999999999999877433 3333 355543211 23566777777
No 216
>PRK08198 threonine dehydratase; Provisional
Probab=79.40 E-value=12 Score=39.44 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=44.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-----cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-----DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-----~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
....+.|.-+|+||-|+++..++++.|.||.+-.... ..+.+--.+.| +. .+++..+.|.+.|..
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~i-e~-----~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTL-ET-----RGPEHIEEILDALRD 395 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEE-Ee-----CCHHHHHHHHHHHHH
Confidence 3458899999999999999999999999999887642 23433322332 21 123455667766654
No 217
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.99 E-value=1.6 Score=39.99 Aligned_cols=35 Identities=9% Similarity=0.198 Sum_probs=28.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI 70 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I 70 (484)
+-.+|.....+.||+++.+++.++++|++|.++-.
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 34455555678899999999999999999998765
No 218
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=78.83 E-value=60 Score=34.97 Aligned_cols=127 Identities=10% Similarity=0.119 Sum_probs=77.2
Q ss_pred CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEE-ecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh
Q 048063 290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIG-CHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER 365 (484)
Q Consensus 290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~-t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r 365 (484)
.+.+.|.|.+. ..+|..+++..+|.+.|++|..-... ...+ -+|.+... ..+...+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~---i~~~v~~~---------~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS---ISFTVPES---------DAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe---EEEEEchh---------hHHHHHHHHHHHHhh
Confidence 45567777663 35699999999999999999764332 2222 23444321 222333333333211
Q ss_pred c-----cC-CceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 366 R-----VC-EGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 366 r-----~~-~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
. .. ....|.+.+. ..||+.+.+.++|.+.+|||..... ....=.|.|...+. .+.++.|.+++
T Consensus 373 ~~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss----Se~~Is~vV~~~~~----~~av~~LH~~~ 444 (447)
T COG0527 373 LLAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS----SEISISFVVDEKDA----EKAVRALHEAF 444 (447)
T ss_pred hcceEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc----CCceEEEEEccHHH----HHHHHHHHHHH
Confidence 0 11 1456677765 6799999999999999999999871 12444677743321 23556666655
No 219
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=78.64 E-value=14 Score=38.89 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=42.9
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeC
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQ 182 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~ 182 (484)
..|.+-+..+|+||.|+++-..|+.+|+|+..-.... .+....=.|||.-.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e 347 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ 347 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe
Confidence 4677777788999999999999999999999988875 45556778998775
No 220
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=78.00 E-value=5.1 Score=39.38 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=33.0
Q ss_pred CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEee
Q 048063 369 EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVA 404 (484)
Q Consensus 369 ~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~ 404 (484)
+..++.+-..|-||+|..|+.+|+..|.||.++-+.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc 111 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC 111 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeee
Confidence 368899999999999999999999999999998875
No 221
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=77.82 E-value=4 Score=44.82 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=40.3
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe--cCCeeEEEEEE
Q 048063 129 YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS--HNDRLACVAYV 179 (484)
Q Consensus 129 ~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T--~~~~~~dvF~V 179 (484)
-.+.+..+-+...|+||.+..|+.+|.++++||...++.. .++.+.-++.+
T Consensus 447 ~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~ 499 (525)
T TIGR01327 447 LEPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL 499 (525)
T ss_pred EecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc
Confidence 3455666777789999999999999999999999999875 44556655554
No 222
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=77.49 E-value=56 Score=34.93 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=63.5
Q ss_pred ceeEEEEEeCCC--CchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhc--
Q 048063 291 GYSIVSVDCKDR--PRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERR-- 366 (484)
Q Consensus 291 ~~t~V~V~~~Dr--pgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr-- 366 (484)
+...|.|.+.+- +|++.++...|.+.|++|......+.... -+|.|... ..+...+.|.......
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~s--Is~~I~~~---------~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS--ISFTVDKE---------DADQAKTLLKSELNLSAL 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCce--EEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence 455677766433 79999999999999999976543222211 13444331 1222222232211111
Q ss_pred -----cCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 048063 367 -----VCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAH 402 (484)
Q Consensus 367 -----~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~ 402 (484)
...-..|.|.+. ++||++++|..+|++.||+|....
T Consensus 370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 112467888654 789999999999999999998876
No 223
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.62 E-value=26 Score=26.02 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=27.4
Q ss_pred EEEEEe---cCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 135 AIEMTG---TDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 135 ~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
.|.+.+ .+.||++++|..+|++.|++|......+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 455665 4889999999999999999998775433
No 224
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=76.57 E-value=14 Score=38.66 Aligned_cols=63 Identities=11% Similarity=0.200 Sum_probs=44.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-----cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-----DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-----~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
..+.|.-+|+||.|++++..++++|.||.+-.... ..+.+.-.+.|... +++..+.|.+.|..
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR------GKEHLDEILKILRD 373 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence 48889999999999999999999999999876431 23444444444321 13455667777654
No 225
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.07 E-value=28 Score=26.03 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=27.6
Q ss_pred EEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 135 AIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 135 ~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
.|.+.+. ++||+++++..+|+++|++|......+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 789999999999999999998775544
No 226
>PRK11898 prephenate dehydratase; Provisional
Probab=75.78 E-value=10 Score=38.16 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=39.2
Q ss_pred eEEEEEec-CCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCC
Q 048063 371 VRLELCAA-NRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNE 423 (484)
Q Consensus 371 t~leV~a~-DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~ 423 (484)
+.|-+... |+||-|+++-..|+++|||+.+...+-...+ -+=.||| |-+|..
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~ 250 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI 250 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC
Confidence 44555554 4699999999999999999999998865544 4457777 556764
No 227
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=75.73 E-value=5.6 Score=43.69 Aligned_cols=61 Identities=16% Similarity=0.355 Sum_probs=45.7
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC--CeeeeEEEEEcCCCCCCChHHHHHHHH
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG--EKSVNAFYLRDISGNEVDMDFVESMKK 434 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g--~~a~d~F~v~~~~g~~l~~~~~~~l~~ 434 (484)
++.+=+.-.|+||.+..|+..|.+++|||...++.... +.+--.+-+ .++++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence 45566667899999999999999999999998887543 334333333 34677888888875
No 228
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.42 E-value=21 Score=28.37 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=37.7
Q ss_pred EEEEE---ecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHH-HHHHHHh
Q 048063 372 RLELC---AANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFV-ESMKKEI 436 (484)
Q Consensus 372 ~leV~---a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~-~~l~~~L 436 (484)
.|+|. ..++||++++|-.+|+++||+|..... ++ ..=.|.+.. .....++.+ ++|.++|
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~--~d~~~~~~~~~~l~~~l 65 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDN--TGSTSDQLLTQALLKEL 65 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEec--cccchhHHHHHHHHHHH
Confidence 45553 367899999999999999999999852 33 334555643 332222323 2555555
No 229
>PRK14630 hypothetical protein; Provisional
Probab=75.30 E-value=26 Score=31.63 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhccCCceEEEEEec-
Q 048063 301 DRPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCEGVRLELCAA- 378 (484)
Q Consensus 301 DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr~~~~t~leV~a~- 378 (484)
|.-.+-..+..++..+|+.+.+......++ ..+ .++|-..+|- ..+..+.+.+.+...+....+..|.+||+++
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV---~idDC~~vSr~i~~~ld~~i~~~Y~LEVSSPG 81 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSF---GVDTLCDLHKMILLILEAVLKYNFSLEISTPG 81 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCC---CHHHHHHHHHHHHHHhcccCCCCeEEEEeCCC
Confidence 344566778888999999999999977665 444 4444444553 3446778888887777655566899999986
Q ss_pred -CCcchHHHHHHHHHhCC
Q 048063 379 -NRVGLLSDITRVLRENG 395 (484)
Q Consensus 379 -DRpGLL~~It~~f~~~g 395 (484)
||| |...-++-+-.|
T Consensus 82 ldRp--L~~~~df~r~~G 97 (143)
T PRK14630 82 INRK--IKSDREFKIFEG 97 (143)
T ss_pred CCCc--CCCHHHHHHhCC
Confidence 555 444444444444
No 230
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=75.14 E-value=1.2e+02 Score=32.61 Aligned_cols=108 Identities=14% Similarity=0.198 Sum_probs=66.7
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCC
Q 048063 35 EDCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIP 111 (484)
Q Consensus 35 ~~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~ 111 (484)
.+.+.|+|... .++|..+++.+.|..+|+||.--........ -.|.|...+. ......+++......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~--- 374 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELL--- 374 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhc---
Confidence 34556666643 3459999999999999999974333222222 3466643211 223344444332211
Q ss_pred CccccccccceeeecCCCCCCeEEEEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 112 SSAVAKTYTNKAVFGSEYPSEHTAIEMTG---TDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 112 ~~~~~~~~~~v~v~~~~~~~~~t~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
. ++. + ..+...|.+.+ ...||..+++..+|++.|+||....
T Consensus 375 -------~-~v~-~----~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 375 -------A-EVE-V----EEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred -------c-eEE-e----eCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 0 222 2 22455666665 5789999999999999999999877
No 231
>PRK14646 hypothetical protein; Provisional
Probab=74.99 E-value=30 Score=31.72 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=62.4
Q ss_pred chHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh--hccCCceEEEEEecCC
Q 048063 304 RLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE--RRVCEGVRLELCAANR 380 (484)
Q Consensus 304 gLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~--rr~~~~t~leV~a~DR 380 (484)
.+...+..++.++|+.+.+..+...++ ..+- .+|-..+|..+ ..+..+.+.+.+.+.|. -..+..|.+||+++.=
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~Lr-V~IDk~~g~gV-tldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIK-IIIKKTNGDDI-SLDDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCc-cHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 456677888999999999999988765 5554 44444444333 24467888888888774 3456689999998643
Q ss_pred cchHHHHHHHHHhCCceE
Q 048063 381 VGLLSDITRVLRENGLAV 398 (484)
Q Consensus 381 pGLL~~It~~f~~~gi~I 398 (484)
-.-|...-.+-+-.|-.+
T Consensus 86 dRpL~~~~df~r~~G~~v 103 (155)
T PRK14646 86 SDELTSERDFKTFKGFPV 103 (155)
T ss_pred CCcCCCHHHHHHhCCCEE
Confidence 333555555555555443
No 232
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=74.47 E-value=28 Score=26.29 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=24.4
Q ss_pred EEEEEec---CCCchHHHHHHHHHhCCCeEE
Q 048063 135 AIEMTGT---DRPGLFSEISAALADLHCNIV 162 (484)
Q Consensus 135 ~i~V~~~---DrpGLL~~Ia~vL~~~glnI~ 162 (484)
.|.|.+. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 889999999999999999996
No 233
>PLN02550 threonine dehydratase
Probab=74.38 E-value=1e+02 Score=34.54 Aligned_cols=133 Identities=11% Similarity=0.100 Sum_probs=72.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCC-CCCCcc
Q 048063 37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTG-EIPSSA 114 (484)
Q Consensus 37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~-~~~~~~ 114 (484)
...+.|.-+||||-|.+++.+|... ||.+-.... .-+.+- ++....- .+.+..+.|.+.|.... +.....
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~-----~~~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEAL-VLYSVGV-----HTEQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceE-EEEEEEe-----CCHHHHHHHHHHHHHCCCCeEeCC
Confidence 3578899999999999999999986 888777533 222222 2222221 12456677777776532 000000
Q ss_pred cc-cccccee-eecCCC-CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEE
Q 048063 115 VA-KTYTNKA-VFGSEY-PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAY 178 (484)
Q Consensus 115 ~~-~~~~~v~-v~~~~~-~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~ 178 (484)
.. ....+.. |..... -..--.+.|.-+.|||-|.+.+.+|.. +.||..-+=...++....+|.
T Consensus 489 ~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~a~vlv 554 (591)
T PLN02550 489 SNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETGANVLV 554 (591)
T ss_pred CChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCCccEEE
Confidence 00 0000000 010011 123557888889999999999997775 245544443333333344553
No 234
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.84 E-value=17 Score=28.90 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=36.3
Q ss_pred cCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 378 ANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 378 ~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
.+.||++++|-++|+++||++..... ++ ..=.|.+...+ ..+.++..++|.++|
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~-~~~~~~~~~~l~~el 65 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDP-NGLDPDVLDALLDDL 65 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcc-cccchHHHHHHHHHH
Confidence 46799999999999999999999852 33 33345554332 114444556666666
No 235
>PRK14634 hypothetical protein; Provisional
Probab=73.83 E-value=32 Score=31.47 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=60.0
Q ss_pred CchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEec-
Q 048063 303 PRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAA- 378 (484)
Q Consensus 303 pgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~- 378 (484)
..+..-+..++..+|+.+.+..+...++ ..+ ..+|-..+|..++ .+..+.+.+.+.+.|.. ..+..|.+||+++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 84 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVS-LDDCAGFSGPMGEALEASQLLTEAYVLEISSPG 84 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCccc-HHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 3566677788899999999999977665 555 4455555664333 44678888888887743 3456899999986
Q ss_pred -CCcchHHHHHHHHHhCC
Q 048063 379 -NRVGLLSDITRVLRENG 395 (484)
Q Consensus 379 -DRpGLL~~It~~f~~~g 395 (484)
||| |...-++-+-.|
T Consensus 85 ldRp--L~~~~~f~r~~G 100 (155)
T PRK14634 85 IGDQ--LSSDRDFQTFRG 100 (155)
T ss_pred CCCc--CCCHHHHHHhCC
Confidence 555 444444444444
No 236
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.34 E-value=33 Score=27.22 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=26.0
Q ss_pred EEEEE---ecCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 135 AIEMT---GTDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 135 ~i~V~---~~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
.|+|. .+++||++++|..+|+++|+||....
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 45552 47889999999999999999998874
No 237
>PRK14636 hypothetical protein; Provisional
Probab=72.77 E-value=27 Score=32.76 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh--hccCCceEEEEEec
Q 048063 302 RPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE--RRVCEGVRLELCAA 378 (484)
Q Consensus 302 rpgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~--rr~~~~t~leV~a~ 378 (484)
.+.+...+..++.++|+.+.+..+...++ ..+- .+|-..+|..++ .+..+.+.+.+...|. -..+..|.+||+++
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lr-V~ID~~~~ggV~-lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP 81 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQ-IMAERPDTRQLV-IEDCAALSRRLSDVFDELDPIEDAYRLEVSSP 81 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEE-EEEECCCCCCcC-HHHHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence 34566778888999999999999977765 4444 444444332232 4577888888888874 23456899999986
Q ss_pred --CCcchHHHHHHHHHhCC
Q 048063 379 --NRVGLLSDITRVLRENG 395 (484)
Q Consensus 379 --DRpGLL~~It~~f~~~g 395 (484)
||| |..--.+-+-.|
T Consensus 82 GldRp--L~~~~df~r~~G 98 (176)
T PRK14636 82 GIDRP--LTRPKDFADWAG 98 (176)
T ss_pred CCCCC--CCCHHHHHHhCC
Confidence 555 444444444444
No 238
>PRK14645 hypothetical protein; Provisional
Probab=72.57 E-value=33 Score=31.45 Aligned_cols=92 Identities=22% Similarity=0.219 Sum_probs=61.2
Q ss_pred CCchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEec
Q 048063 302 RPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAA 378 (484)
Q Consensus 302 rpgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~ 378 (484)
...+-..+...+..+|+.+.+..+...++ ..+- .+|-..+|..++ .+..+.+.+.+.+.|.. ..+..|.|||+++
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilr-V~ID~~~~~~v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 85 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVL-VRIDRKDEQPVT-VEDLERASRALEAELDRLDPIEGEYRLEVESP 85 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEE-EEEECCCCCCcC-HHHHHHHHHHHHHHhcccccCCCceEEEEeCC
Confidence 34466777889999999999999987765 4444 444433443333 45778888888888743 3456899999986
Q ss_pred CCcchHHHHHHHHHhCC
Q 048063 379 NRVGLLSDITRVLRENG 395 (484)
Q Consensus 379 DRpGLL~~It~~f~~~g 395 (484)
.=-.=|...-.+-+-.|
T Consensus 86 GldRpL~~~~df~r~~G 102 (154)
T PRK14645 86 GPKRPLFTARHFERFAG 102 (154)
T ss_pred CCCCCCCCHHHHHHhCC
Confidence 33333555555555555
No 239
>PRK09084 aspartate kinase III; Validated
Probab=71.40 E-value=35 Score=36.69 Aligned_cols=99 Identities=8% Similarity=0.074 Sum_probs=60.8
Q ss_pred CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh-
Q 048063 290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER- 365 (484)
Q Consensus 290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r- 365 (484)
++...|.|.+. +.+|.++++...|.+.|++|.--. +.. .--+|.|...+-... ..+.+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~----~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTST----GDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhh----hhHHHHHHHHHHHhcC
Confidence 45567888754 689999999999999999998654 221 112355543221110 111122233333321
Q ss_pred -c---cCCceEEEEEec---CCcchHHHHHHHHHhCCc
Q 048063 366 -R---VCEGVRLELCAA---NRVGLLSDITRVLRENGL 396 (484)
Q Consensus 366 -r---~~~~t~leV~a~---DRpGLL~~It~~f~~~gi 396 (484)
+ .+....|.|.+. ++||+++++..+|.+.+|
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 1 122577888886 799999999999987543
No 240
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=70.16 E-value=19 Score=38.45 Aligned_cols=52 Identities=8% Similarity=0.240 Sum_probs=40.9
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCe-eeeEEEEEcCCCCC
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEK-SVNAFYLRDISGNE 423 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~-a~d~F~v~~~~g~~ 423 (484)
+.|-+...|+||-|+++-.+|+++|||+.+.+.+-.... .+=.|||. -+|..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD-~eg~~ 69 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVE-FDEAS 69 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEE-EecCc
Confidence 456677799999999999999999999999998755433 45578884 45654
No 241
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=70.10 E-value=2.9e+02 Score=34.58 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=114.1
Q ss_pred CceEEEEecCCCCCeEEEEEEec-CCC--cHHHHHHHHHHhC-CceEEEEEE-EecCCeEEEEEEEeeCCCCC--CCcHH
Q 048063 23 PTCRVCIDNESMEDCTVVKVDSV-SKQ--GLLLEMVQVLTDM-NLTISKSYI-SSDAGWFMDVFHVKDEHGNK--LTDQK 95 (484)
Q Consensus 23 p~~~V~i~~~~~~~~t~I~V~~~-Drp--GLfa~ia~vL~~~-glnI~~A~I-tt~~g~~~d~F~V~d~~g~~--~~~~~ 95 (484)
+.+.+.+.......+.-+.|+.| ||- .+-.+|-..|.+. +....+-+. .+.+..+.--|++....+.. +....
T Consensus 327 ~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~ 406 (1528)
T PF05088_consen 327 RRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEA 406 (1528)
T ss_pred CceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHH
Confidence 33456666666666766666654 443 4677888887654 444544443 44666666667776555543 22222
Q ss_pred HHHHHH-----------HHHccCC---C----------------CCCcccc--------------ccccceeeec--CCC
Q 048063 96 VINYIQ-----------QAIGTTG---E----------------IPSSAVA--------------KTYTNKAVFG--SEY 129 (484)
Q Consensus 96 ~~~~L~-----------~~L~~~~---~----------------~~~~~~~--------------~~~~~v~v~~--~~~ 129 (484)
..+.|. ++|.... + ...|.|. ..+..+. +. ...
T Consensus 407 le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~-l~~~~~~ 485 (1528)
T PF05088_consen 407 LEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVD-LYRPAGA 485 (1528)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEE-EeccCCC
Confidence 222222 2222210 0 0112111 1122333 32 233
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec---CC--eeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHH
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH---ND--RLACVAYVSDQSTDTPIDDPGRLATIEEYITTV 204 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~---~~--~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~ 204 (484)
.+....+.++...++..|+++.-+|..+|+.|.+.+-+.. ++ .....|++... .+........++.++++|.++
T Consensus 486 ~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 486 GPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999999999987652 22 25588999887 565555556778999999999
Q ss_pred hcccccC
Q 048063 205 LRATAER 211 (484)
Q Consensus 205 L~g~~~~ 211 (484)
..|....
T Consensus 565 ~~g~~e~ 571 (1528)
T PF05088_consen 565 WNGRAEN 571 (1528)
T ss_pred hcCCCCC
Confidence 8887543
No 242
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=70.01 E-value=15 Score=27.48 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=31.9
Q ss_pred EEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063 372 RLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR 417 (484)
Q Consensus 372 ~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~ 417 (484)
.|.+.+. +.||++++|.++|.+.||++....-++. + ..=.|.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s-~-~~is~~v~ 49 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSS-E-RNISAVID 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCc-c-cEEEEEEe
Confidence 4666663 7899999999999999999988864332 1 33345554
No 243
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=69.52 E-value=2.3e+02 Score=33.09 Aligned_cols=104 Identities=11% Similarity=0.073 Sum_probs=66.6
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+.+.|+|.+. +.+|.++++..+|.++|++|.--..++. +. .-.|.+.. ...+.+.+.|....
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~---------~~~~~~~~~l~~~~---- 380 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTS---------EVADSALKLLDDAA---- 380 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeH---------HHHHHHHHHHHhhc----
Confidence 5567777765 7789999999999999999874433333 22 12244431 12223333333211
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEE
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEA 164 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A 164 (484)
+ ..++. + ..+...|.|.+. .++|+.+++..+|.+.|+++..-
T Consensus 381 ~-----~~~i~-v----~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 381 L-----PGELK-L----REGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred C-----CCcEE-E----eCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1 12233 2 235778888884 68999999999999999999544
No 244
>PRK09084 aspartate kinase III; Validated
Probab=68.79 E-value=87 Score=33.69 Aligned_cols=102 Identities=11% Similarity=0.206 Sum_probs=61.3
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVDSV---SKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~~~---DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+...|+|.+. +.+|.++++...|+++|+||.--. ++.. --.|.|...+-.........+.+.+.|..
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~-sse~---sIs~~i~~~~~~~~~~~~~~~~l~~el~~------ 374 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT-TSEV---SVSLTLDTTGSTSTGDTLLTQALLTELSQ------ 374 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe-ccCc---EEEEEEechhhhhhhhHHHHHHHHHHHhc------
Confidence 4567788654 689999999999999999998543 2221 22466643211100000112233333321
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCC
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLH 158 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~g 158 (484)
+ ..+. + ..+...|.|.+. ++||+++++..+|...+
T Consensus 375 ~------~~i~-~----~~~va~IsvvG~gm~~~~gv~arif~aL~~~n 412 (448)
T PRK09084 375 L------CRVE-V----EEGLALVALIGNNLSKACGVAKRVFGVLEPFN 412 (448)
T ss_pred C------CeEE-E----ECCeEEEEEECCCcccCcChHHHHHHHHHhCC
Confidence 1 1233 2 235778888875 79999999999998743
No 245
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=68.27 E-value=36 Score=25.26 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=35.2
Q ss_pred cCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 378 ANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 378 ~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
.++||+.++|-++|.++||++.... | ++ ..=.|++...+. ++..+++.++|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~~~----~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDSLL----PKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehhhh----hHHHHHHHHhh
Confidence 3679999999999999999999884 2 33 445677754321 23455665554
No 246
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=67.98 E-value=37 Score=26.58 Aligned_cols=62 Identities=6% Similarity=0.106 Sum_probs=38.9
Q ss_pred EEEEE---ecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 135 AIEMT---GTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 135 ~i~V~---~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
.|.+. -.+.||+++++..+|+++|+++.... +.. ..-.|.|... ....+...+..|.+.|++
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~~---~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDPT---KNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEch---hhccchHHHHHHHHHHHh
Confidence 45553 36789999999999999999996653 322 2233444432 222223456677777665
No 247
>PRK09224 threonine dehydratase; Reviewed
Probab=67.72 E-value=91 Score=34.12 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=71.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCC-CCCCcc
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTG-EIPSSA 114 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~-~~~~~~ 114 (484)
....+.|.-|||||-|.+++.+|. +.||..-.....+.....+|....-.+. +...+.|.+.|.... ....+.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 346888999999999999999998 7899887653322222334443332221 112566777775531 000000
Q ss_pred cc-cccccee-eecC--CCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEE
Q 048063 115 VA-KTYTNKA-VFGS--EYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHA 166 (484)
Q Consensus 115 ~~-~~~~~v~-v~~~--~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i 166 (484)
.. ..+..+. .+.- ....+-..+.|.-+.|||-|-+...+|. -+.||..-+=
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Y 455 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHY 455 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEE
Confidence 00 0000000 0000 0112356788889999999999988776 7788877775
No 248
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=67.50 E-value=13 Score=28.18 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=23.4
Q ss_pred cCCcchHHHHHHHHHhCCceEEEEEe
Q 048063 378 ANRVGLLSDITRVLRENGLAVVRAHV 403 (484)
Q Consensus 378 ~DRpGLL~~It~~f~~~gi~I~~A~i 403 (484)
.|+||+++++.+.|.++||+|.....
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 58899999999999999999986654
No 249
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=66.97 E-value=38 Score=25.49 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.9
Q ss_pred ecCCCchHHHHHHHHHhCCCeEEEEEE
Q 048063 140 GTDRPGLFSEISAALADLHCNIVEAHA 166 (484)
Q Consensus 140 ~~DrpGLL~~Ia~vL~~~glnI~~A~i 166 (484)
..|+||.++++...|++.|+||.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 479999999999999999999986643
No 250
>PRK08526 threonine dehydratase; Provisional
Probab=66.78 E-value=39 Score=35.82 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=47.2
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC-----CeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN-----DRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~-----~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
......+.|.-+||||-|.+++..+...+.||....-.... +.+.-.+.+... +++..++|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~-------~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK-------GKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999987654322 122222333322 35677777777654
No 251
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=66.73 E-value=8.6 Score=35.31 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=29.3
Q ss_pred CeEEEEEEe--cCCCchHHHHHHHHHhCCCeEEEEEEE
Q 048063 132 EHTAIEMTG--TDRPGLFSEISAALADLHCNIVEAHAW 167 (484)
Q Consensus 132 ~~t~i~V~~--~DrpGLL~~Ia~vL~~~glnI~~A~i~ 167 (484)
+.-+|+++. .+.||+++.+++.++.+|++|..+...
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 445566655 678999999999999999999988743
No 252
>PLN02317 arogenate dehydratase
Probab=66.61 E-value=40 Score=35.51 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=40.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCe---------------eEEEEEEEeC
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDR---------------LACVAYVSDQ 182 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~---------------~~dvF~V~~~ 182 (484)
.|.|.+.-.|+||-|+++-.+|+.+|+|+..........+ ..=.|||.-.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~e 347 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFE 347 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEE
Confidence 5778888899999999999999999999998886653332 3458888765
No 253
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=65.57 E-value=41 Score=30.05 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=49.7
Q ss_pred cCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 126 GSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 126 ~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
+.-....-..+.+.-.||.|.|+++-.++++.++||...+-.- ..+++--+..+... + . +...+.|-+.|++
T Consensus 65 ~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--s--m--~~~V~~ii~kl~k 137 (150)
T COG4492 65 YDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--S--M--EKDVDKIIEKLRK 137 (150)
T ss_pred hhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--h--h--hhhHHHHHHHHhc
Confidence 3344445678888999999999999999999999999888664 55666555554432 1 1 2344555555443
No 254
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=65.08 E-value=18 Score=27.42 Aligned_cols=28 Identities=14% Similarity=0.482 Sum_probs=24.4
Q ss_pred EEEEEec---CCcchHHHHHHHHHhCCceEE
Q 048063 372 RLELCAA---NRVGLLSDITRVLRENGLAVV 399 (484)
Q Consensus 372 ~leV~a~---DRpGLL~~It~~f~~~gi~I~ 399 (484)
.|.|.+. +.||+++++..+|.+.||++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 789999999999999999996
No 255
>PRK11898 prephenate dehydratase; Provisional
Probab=64.93 E-value=48 Score=33.38 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=39.2
Q ss_pred CeEEEEEEecC-CCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeC
Q 048063 132 EHTAIEMTGTD-RPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQ 182 (484)
Q Consensus 132 ~~t~i~V~~~D-rpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~ 182 (484)
..+.|.+...+ +||-|+++-.+|+.+|+|+........ +....-.|||.-.
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e 247 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE 247 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE
Confidence 35666666655 699999999999999999998887653 3445567888764
No 256
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.76 E-value=33 Score=24.56 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=29.4
Q ss_pred ecCCcchHHHHHHHHHhCCceEEEEEeeecCC-eeeeEEEEE
Q 048063 377 AANRVGLLSDITRVLRENGLAVVRAHVATKGE-KSVNAFYLR 417 (484)
Q Consensus 377 a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~-~a~d~F~v~ 417 (484)
..|.||+++++.++|.++|++|........++ ...=.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 36889999999999999999998876532222 133346664
No 257
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=64.75 E-value=51 Score=25.78 Aligned_cols=29 Identities=3% Similarity=0.000 Sum_probs=23.8
Q ss_pred EEEEE---eCCCCchHHHHHHHHhhCCceEEE
Q 048063 294 IVSVD---CKDRPRLMFDTVCTLTDMQYVVFH 322 (484)
Q Consensus 294 ~V~V~---~~DrpgLl~~i~~~L~~~~l~I~~ 322 (484)
.|.+. .++.+|+++++..+|++.|++|..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 45553 367899999999999999999954
No 258
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=64.52 E-value=17 Score=39.01 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=40.7
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeee--EEEEEcCCCCC
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVN--AFYLRDISGNE 423 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d--~F~v~~~~g~~ 423 (484)
+.|=+...|+||-|+++-.+|+++|||+.+.+.+-......+ .|||. -+|..
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD-~Eg~~ 85 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVD-VELFH 85 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEE-EEcCH
Confidence 456666689999999999999999999999998876555444 78884 34654
No 259
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.38 E-value=49 Score=26.18 Aligned_cols=56 Identities=9% Similarity=0.208 Sum_probs=37.2
Q ss_pred cCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 141 TDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 141 ~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
.+.||+++++..+|+++|+||...- + +. ..-.|.|... ...+. .+.++.|.+.|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~--~~~~~-~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD--PNGLD-PDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc--ccccc-hHHHHHHHHHHHh
Confidence 5889999999999999999998874 3 22 2334545443 11132 2366777777766
No 260
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.28 E-value=24 Score=25.29 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.7
Q ss_pred ecCCCchHHHHHHHHHhCCCeEEEEEEE
Q 048063 140 GTDRPGLFSEISAALADLHCNIVEAHAW 167 (484)
Q Consensus 140 ~~DrpGLL~~Ia~vL~~~glnI~~A~i~ 167 (484)
.+|.||.++++...|+++|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 4789999999999999999999876553
No 261
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.26 E-value=58 Score=24.01 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=27.3
Q ss_pred EEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 135 AIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 135 ~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
.|.+.+. +.+|+++++...|++.|++|......+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 789999999999999999998776443
No 262
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.86 E-value=25 Score=26.28 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=31.8
Q ss_pred EEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEE
Q 048063 372 RLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLR 417 (484)
Q Consensus 372 ~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~ 417 (484)
.|.+.+. ++||+++++.++|.+.||++....-.+. + ..=.|.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s-~-~~isf~v~ 49 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGAS-E-INISCVID 49 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCc-c-ceEEEEEe
Confidence 4556664 6899999999999999999988865442 2 23345554
No 263
>PRK12483 threonine dehydratase; Reviewed
Probab=61.73 E-value=1.6e+02 Score=32.47 Aligned_cols=116 Identities=11% Similarity=0.098 Sum_probs=76.5
Q ss_pred ceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHH-HHHHHHHHHH-Hh----
Q 048063 291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEK-ERVIKCLEAA-IE---- 364 (484)
Q Consensus 291 ~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~-e~l~~~L~~~-l~---- 364 (484)
....+.|.-|||||-|.+++..|... ||.+..-......-...++..+..+. +.. ++|.+.|++. +.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~dl 416 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPR-----HDPRAQLLASLRAQGFPVLDL 416 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeEEC
Confidence 44578889999999999999999988 88876664333222334444443332 233 6677776553 10
Q ss_pred ----------h-----ccC---CceEEEEEecCCcchHHHHHHHHHh-CCceEEEEEeeecCCeeeeEEE
Q 048063 365 ----------R-----RVC---EGVRLELCAANRVGLLSDITRVLRE-NGLAVVRAHVATKGEKSVNAFY 415 (484)
Q Consensus 365 ----------r-----r~~---~~t~leV~a~DRpGLL~~It~~f~~-~gi~I~~A~i~T~g~~a~d~F~ 415 (484)
| +.+ +--.+.|+=+.|||=|-.+++.|.. .+|+.++=+. .|+....+|.
T Consensus 417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~--~~~~~a~v~v 484 (521)
T PRK12483 417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN--HGAADGRVLA 484 (521)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC--CCCCceEEEE
Confidence 1 111 1356788889999999999999997 4777766654 4555556665
No 264
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=61.56 E-value=10 Score=41.65 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=33.3
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC
Q 048063 372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG 407 (484)
Q Consensus 372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g 407 (484)
.++|.|.||.|+..+|-..|..++|+|...+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 489999999999999999999999999999997654
No 265
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=61.37 E-value=53 Score=35.22 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=47.1
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec-CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH-NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~-~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
.+.|.+..+|+||-|+++-.+|+.+|+|+........ .....-.|+|.-. |.. + ..+..+-+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e--g~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD--EAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe--cCc--c-HHHHHHHHHHHH
Confidence 5778888899999999999999999999998876642 3334457888765 432 2 334444444444
No 266
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=61.37 E-value=61 Score=26.35 Aligned_cols=65 Identities=5% Similarity=0.087 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEec--CCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHHHhc
Q 048063 133 HTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSH--NDRLACVAYVSDQSTDTPIDDPGRLATIEEYITTVLR 206 (484)
Q Consensus 133 ~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~--~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~~L~ 206 (484)
.+.+.+.++++|+.|.++-++-...|..|.....++. ++.+---|.|.. ..++ +.|...|++...
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHcc
Confidence 4788999999999999999999999999998888774 444444454432 3333 567777777664
No 267
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=60.76 E-value=18 Score=25.60 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.7
Q ss_pred EEEEEecC---CcchHHHHHHHHHhCCceEEEEEee
Q 048063 372 RLELCAAN---RVGLLSDITRVLRENGLAVVRAHVA 404 (484)
Q Consensus 372 ~leV~a~D---RpGLL~~It~~f~~~gi~I~~A~i~ 404 (484)
.|+|.+.+ .+|+++++.++|.+++++|......
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 35555554 8999999999999999999887643
No 268
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.50 E-value=66 Score=23.75 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 135 AIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 135 ~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
.|.+.+. ++||+++++...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4556654 789999999999999999998776543
No 269
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=60.34 E-value=3.3e+02 Score=31.98 Aligned_cols=103 Identities=11% Similarity=0.157 Sum_probs=62.9
Q ss_pred CeEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCCCCCC
Q 048063 36 DCTVVKVD---SVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTGEIPS 112 (484)
Q Consensus 36 ~~t~I~V~---~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~~~~~ 112 (484)
+.+.|+|. ..+.+|.++++...|+++|+||.-- ++.. .--+|.+.+.+. ....+.++.+.+.|..
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse--~sis~~i~~~~~--~~~~~~~~~l~~~l~~------ 388 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE--TNVTVSLDPSEN--LVNTDVLAALSADLSQ------ 388 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC--CEEEEEEccccc--cchHHHHHHHHHHHhh------
Confidence 45677774 3468999999999999999999633 3322 111344433211 1011233444433332
Q ss_pred ccccccccceeeecCCCCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeE
Q 048063 113 SAVAKTYTNKAVFGSEYPSEHTAIEMTGT---DRPGLFSEISAALADLHCNI 161 (484)
Q Consensus 113 ~~~~~~~~~v~v~~~~~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI 161 (484)
+ ..+. +. .+...|.|.+. .+||+++++..+|++.|+++
T Consensus 389 ~------~~i~-~~----~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 389 I------CRVK-II----VPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred c------CcEE-Ee----CCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1 1133 22 24578888885 89999999999999977654
No 270
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=60.23 E-value=17 Score=25.79 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=25.6
Q ss_pred EEEEEecC---CCchHHHHHHHHHhCCCeEEEEEE
Q 048063 135 AIEMTGTD---RPGLFSEISAALADLHCNIVEAHA 166 (484)
Q Consensus 135 ~i~V~~~D---rpGLL~~Ia~vL~~~glnI~~A~i 166 (484)
.|+|.+.+ .+|.++++..+|++++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 34555544 899999999999999999977653
No 271
>PRK14640 hypothetical protein; Provisional
Probab=59.95 E-value=1e+02 Score=28.02 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEecCCc
Q 048063 305 LMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAANRV 381 (484)
Q Consensus 305 Ll~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~DRp 381 (484)
+...+...+..+|+.+.+..+...++ ..+ ..+|-..+| + ..+..+.+.+.|...|.. ..+..|.+||+++.=-
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~l-rV~ID~~~g--v-~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTL-RVYIDGENG--V-SVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCC--C-CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 45567778899999999999977665 444 344444455 3 345788888888888843 3455899999986433
Q ss_pred chHHHHHHHHHhCCceE
Q 048063 382 GLLSDITRVLRENGLAV 398 (484)
Q Consensus 382 GLL~~It~~f~~~gi~I 398 (484)
.-|...-++-+-.|=.|
T Consensus 84 RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 84 RPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CcCCCHHHHHHhCCCeE
Confidence 33555556655555443
No 272
>PRK14639 hypothetical protein; Provisional
Probab=58.26 E-value=97 Score=27.83 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=56.1
Q ss_pred HHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEecCCcchHHH
Q 048063 309 TVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAANRVGLLSD 386 (484)
Q Consensus 309 i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~DRpGLL~~ 386 (484)
+-.++.++|+.+.+......++..+-.++|-...| + +.+..+.+.+.+.+.|.. ..+..|.+||+++.=-.-|..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v-~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~ 79 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--V-NLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSK 79 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--C-CHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCC
Confidence 34578899999999999877763333444443444 3 345788888888888853 345689999998633333444
Q ss_pred HHHHHHhCCceE
Q 048063 387 ITRVLRENGLAV 398 (484)
Q Consensus 387 It~~f~~~gi~I 398 (484)
.-++-+-.|-.+
T Consensus 80 ~~~f~r~~G~~v 91 (140)
T PRK14639 80 IEHFAKSIGELV 91 (140)
T ss_pred HHHHHHhCCCEE
Confidence 555555555443
No 273
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=58.18 E-value=65 Score=23.81 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=27.7
Q ss_pred cCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEe
Q 048063 141 TDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSD 181 (484)
Q Consensus 141 ~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~ 181 (484)
.+++|+.++|..+|+++|+|+.... | +. ..-.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 4789999999999999999998873 3 22 334455544
No 274
>PRK14647 hypothetical protein; Provisional
Probab=58.01 E-value=1.2e+02 Score=27.79 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=57.2
Q ss_pred hHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEecCCc
Q 048063 305 LMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAANRV 381 (484)
Q Consensus 305 Ll~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~DRp 381 (484)
+-..+..++..+|+.+.+..+...++ ..+-. +|-...|- +.+..+.+.+.+.+.|.. ..+..|.|||+++.=-
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV-~ID~~~gv---slddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~ 85 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRL-FIDKEGGV---NLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLD 85 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEE-EEeCCCCC---CHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCC
Confidence 44556777899999999999987765 44444 44334442 345778888888888843 3456899999986322
Q ss_pred chHHHHHHHHHhCCc
Q 048063 382 GLLSDITRVLRENGL 396 (484)
Q Consensus 382 GLL~~It~~f~~~gi 396 (484)
.-|...-++-+-.|-
T Consensus 86 RpL~~~~~f~r~~G~ 100 (159)
T PRK14647 86 RPLKKEADYERYAGR 100 (159)
T ss_pred CcCCCHHHHHHhCCc
Confidence 234444454444443
No 275
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=56.97 E-value=48 Score=35.73 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=41.4
Q ss_pred CCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCC-eeE-EEEEEEeC
Q 048063 129 YPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHND-RLA-CVAYVSDQ 182 (484)
Q Consensus 129 ~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~-~~~-dvF~V~~~ 182 (484)
.....+.|-+..+|+||-|+++-.+|+.+|+|+.......... ... -.|+|.-.
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 3445677888889999999999999999999999887665332 233 46777664
No 276
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=56.74 E-value=99 Score=36.22 Aligned_cols=134 Identities=9% Similarity=0.104 Sum_probs=78.4
Q ss_pred CceeEEEEEe---CCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh--
Q 048063 290 KGYSIVSVDC---KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE-- 364 (484)
Q Consensus 290 ~~~t~V~V~~---~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~-- 364 (484)
++.+.|.+.+ .+.+|.++++...|.+.|++|..- ++.. .--+|.+...+.. .....++.+.+.|.. +.
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse--~sis~~i~~~~~~--~~~~~~~~l~~~l~~-~~~i 392 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSE--TNVTVSLDPSENL--VNTDVLAALSADLSQ-ICRV 392 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCC--CEEEEEEcccccc--chHHHHHHHHHHHhh-cCcE
Confidence 4556777753 568999999999999999999654 2222 1113444332211 011233444433332 11
Q ss_pred hccCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeE-EEEEcCCCCCCChHHHHHHHHHhCCC
Q 048063 365 RRVCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNA-FYLRDISGNEVDMDFVESMKKEILGP 439 (484)
Q Consensus 365 rr~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~-F~v~~~~g~~l~~~~~~~l~~~L~~~ 439 (484)
.-......|.|++. .+||+++.+-.+|.+.+|++ -.+|...... |.|...+. .+.++.|.+++.+.
T Consensus 393 ~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~-----i~~gsSe~~Is~vV~~~d~----~~av~~LH~~f~~~ 462 (861)
T PRK08961 393 KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL-----ISQASNDLNLTFVIDESDA----DGLLPRLHAELIES 462 (861)
T ss_pred EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE-----EECCCccccEEEEEeHHHH----HHHHHHHHHHHhcC
Confidence 01123577888886 78999999999999977655 2244444444 55533222 23567777777454
No 277
>PRK14637 hypothetical protein; Provisional
Probab=55.37 E-value=1.5e+02 Score=26.99 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=58.6
Q ss_pred CCchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhcc-CCceEEEEEec-
Q 048063 302 RPRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRV-CEGVRLELCAA- 378 (484)
Q Consensus 302 rpgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr~-~~~t~leV~a~- 378 (484)
--|....+..++.++|+.+.+..+...++ ..+-.|+ -..+| + +.+..+.+.+.+...|..-. +..|.+||+++
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I-D~~~g--V-~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPG 82 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI-YSAGG--V-GLDDCARVHRILVPRLEALGGVRDVFLEVSSPG 82 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE-ECCCC--C-CHHHHHHHHHHHHHHhcccccccCcEEEEeCCC
Confidence 35778889999999999999999987765 5554444 33344 2 34467788887777764322 24689999986
Q ss_pred -CCcchHHHHHHHHHhCC
Q 048063 379 -NRVGLLSDITRVLRENG 395 (484)
Q Consensus 379 -DRpGLL~~It~~f~~~g 395 (484)
||| |...-++-+-.|
T Consensus 83 ldRp--L~~~~~f~r~~G 98 (151)
T PRK14637 83 IERV--IKNAAEFSIFVG 98 (151)
T ss_pred CCCC--CCCHHHHHHhCC
Confidence 555 444444444434
No 278
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.36 E-value=40 Score=24.94 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=32.6
Q ss_pred EEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEc
Q 048063 372 RLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418 (484)
Q Consensus 372 ~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~ 418 (484)
.+.+.+. +.||+++++-+.|.+.|+++.....++.+ ..=.|.+..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 4556664 67999999999999999999888654422 223466644
No 279
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=54.94 E-value=39 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=26.5
Q ss_pred EEEEEec---CCcchHHHHHHHHHhCCceEEEEEe
Q 048063 372 RLELCAA---NRVGLLSDITRVLRENGLAVVRAHV 403 (484)
Q Consensus 372 ~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i 403 (484)
.|++.+. +++|+++++...|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3566544 7899999999999999999987754
No 280
>PRK14638 hypothetical protein; Provisional
Probab=54.33 E-value=1.5e+02 Score=26.85 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=57.7
Q ss_pred hHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEec--C
Q 048063 305 LMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAA--N 379 (484)
Q Consensus 305 Ll~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~--D 379 (484)
+-.-+..++..+|+.+.+......++ ..+-.| |-..+|. ++ .+..+.+.+.|.+.|.. ..+..|.+||+++ |
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~-ID~~~G~-v~-lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRII-IDNPVGY-VS-VRDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEE-EECCCCC-cC-HHHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 44566778899999999999977664 555444 4434453 32 45778888888887743 3345899999986 5
Q ss_pred CcchHHHHHHHHHhCCc
Q 048063 380 RVGLLSDITRVLRENGL 396 (484)
Q Consensus 380 RpGLL~~It~~f~~~gi 396 (484)
|| |...-++-+-.|=
T Consensus 87 Rp--L~~~~~f~r~~G~ 101 (150)
T PRK14638 87 RP--LRGPKDYVRFTGK 101 (150)
T ss_pred CC--CCCHHHHHHhCCC
Confidence 55 4455555555553
No 281
>PRK08526 threonine dehydratase; Provisional
Probab=54.25 E-value=77 Score=33.58 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=46.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cC---CeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 35 EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DA---GWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 35 ~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~---g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
.....+.|.-+||||-|++++..+.+.+.||.+-.... .+ +.+.-.+.+ .. .+.+..+.|.+.|..
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~-e~-----~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITL-ET-----KGKEHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEE-Ee-----CCHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999887633 11 333322333 21 224566777777754
No 282
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=54.06 E-value=1.5e+02 Score=26.90 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=56.0
Q ss_pred hHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEec--C
Q 048063 305 LMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAA--N 379 (484)
Q Consensus 305 Ll~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~--D 379 (484)
+-..+..++..+|+.+.+..+...++ ..+..| |-..+| + +.+..+.+.+.+...|.. ..+..|.|||+++ |
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~-Id~~~g--v-~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~ 84 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIY-IDKEGG--I-DLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD 84 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEE-EECCCC--C-CHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence 44556788899999999999977665 444443 333344 3 456788888888888853 2345799999986 4
Q ss_pred CcchHHHHHHHHHhCC
Q 048063 380 RVGLLSDITRVLRENG 395 (484)
Q Consensus 380 RpGLL~~It~~f~~~g 395 (484)
|| |...-++-+-.|
T Consensus 85 Rp--L~~~~~f~r~~G 98 (154)
T PRK00092 85 RP--LKKARDFRRFIG 98 (154)
T ss_pred Cc--CCCHHHHHHhCC
Confidence 55 333333333333
No 283
>PRK14631 hypothetical protein; Provisional
Probab=53.58 E-value=1.4e+02 Score=27.92 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=61.1
Q ss_pred chHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEcc---------------CCCCCCChhHHHHHHHHHHHHHh--h
Q 048063 304 RLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHI---------------DGYALNTEGEKERVIKCLEAAIE--R 365 (484)
Q Consensus 304 gLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~---------------~g~~~~~~~~~e~l~~~L~~~l~--r 365 (484)
.+...+..++..+|+.+.+..+...++ ..+-.|+=... .+..+ ..+..+.+.+.+...|. -
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gv-tiddC~~vSr~is~~LD~~d 87 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGI-GVEDCVRVTQQVGAMLDVHD 87 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCc-CHHHHHHHHHHHHHHhcccc
Confidence 455667788999999999999987765 55555552210 11112 34577888888888774 3
Q ss_pred ccCCceEEEEEecCCcchHHHHHHHHHhCCce
Q 048063 366 RVCEGVRLELCAANRVGLLSDITRVLRENGLA 397 (484)
Q Consensus 366 r~~~~t~leV~a~DRpGLL~~It~~f~~~gi~ 397 (484)
..+..|.|||+++.=-.-|.....+-+-.|=.
T Consensus 88 ~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~ 119 (174)
T PRK14631 88 PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQ 119 (174)
T ss_pred cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCe
Confidence 34568999999864444466666666665543
No 284
>PRK14633 hypothetical protein; Provisional
Probab=52.88 E-value=1.7e+02 Score=26.64 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEecCCcc
Q 048063 305 LMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAANRVG 382 (484)
Q Consensus 305 Ll~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~DRpG 382 (484)
+-..+..++.++|+.+.+..+...++..+..| |-..+|- +.+..+.+.+.+...|.. ..+..|.+||+++.=-.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~-ID~~~Gv---~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIF-IDHENGV---SVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EeCCCCC---CHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 45567788999999999999976666544444 4334552 345778888888888743 34568999999864333
Q ss_pred hHHHHHHHHHhCCce
Q 048063 383 LLSDITRVLRENGLA 397 (484)
Q Consensus 383 LL~~It~~f~~~gi~ 397 (484)
-|...-++-+-.|=.
T Consensus 82 pL~~~~~f~r~~G~~ 96 (150)
T PRK14633 82 QIFNIIQAQALVGFN 96 (150)
T ss_pred CCCCHHHHHHhCCCe
Confidence 355555555555543
No 285
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=52.30 E-value=1.1e+02 Score=32.52 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=44.5
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEE-ecCCeeEEEE-EEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAW-SHNDRLACVA-YVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~-T~~~~~~dvF-~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
+.....+.+.-+||||-|.+++..+...+.||...+-. ..+.....++ -+... +++..++|.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~-------~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELN-------DKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 45678899999999999999999777777799966544 2222222333 23322 24566777776655
No 286
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=51.88 E-value=1.4e+02 Score=27.41 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=52.3
Q ss_pred eeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhccCC-c
Q 048063 292 YSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCE-G 370 (484)
Q Consensus 292 ~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr~~~-~ 370 (484)
...+.|.-+|+||-+..+..=|...|.||..- ....+. ++.|+ +
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItI---------------iH~r~k--------------------k~g~r~p 49 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITI---------------IHSRDK--------------------KYGPRVP 49 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEE---------------EeecCc--------------------ccCCcee
Confidence 35678889999999999999999999999851 111111 01111 1
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEE
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAH 402 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~ 402 (484)
..+.+ -.||.-....+.+.+...|+.|.+..
T Consensus 50 V~i~~-~~d~~~~~~~i~~~~e~~Gi~I~~~d 80 (170)
T COG2061 50 VQIVF-EGDREDKDAKIIRLLEEEGIIIIRFD 80 (170)
T ss_pred EEEEE-EecccHHHHHHHHHHHhCCcEEEEec
Confidence 22222 34777888899999999999998764
No 287
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.65 E-value=49 Score=24.49 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=32.4
Q ss_pred EEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEc
Q 048063 372 RLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418 (484)
Q Consensus 372 ~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~ 418 (484)
.+.+.+. ++||+++.+...|++.|+++......+.+ ..=.|.+..
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~ 50 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHN 50 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH
Confidence 4566664 68999999999999999999988654422 222366643
No 288
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=50.82 E-value=90 Score=22.35 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=25.9
Q ss_pred EEEEEec---CCCchHHHHHHHHHhCCCeEEEEEE
Q 048063 135 AIEMTGT---DRPGLFSEISAALADLHCNIVEAHA 166 (484)
Q Consensus 135 ~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i 166 (484)
.|++.+. +++|+++++...|+++++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 3556544 8899999999999999999976643
No 289
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.91 E-value=1.1e+02 Score=23.09 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=26.8
Q ss_pred EEEEEec--CCCchHHHHHHHHHhCCCeEEEEEEEec
Q 048063 135 AIEMTGT--DRPGLFSEISAALADLHCNIVEAHAWSH 169 (484)
Q Consensus 135 ~i~V~~~--DrpGLL~~Ia~vL~~~glnI~~A~i~T~ 169 (484)
.|.+.+. ..+|+++++..+|++.|++|......+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 3455553 4689999999999999999987764443
No 290
>PRK08639 threonine dehydratase; Validated
Probab=49.79 E-value=98 Score=32.90 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=44.0
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe-cCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS-HNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T-~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
+.....+.+.-+||||-|.+++..+...+.||...+-.- .+.....++..-.. .+++..+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~------~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIEL------KDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 556788999999999999999997776666998875432 22222223222221 124566777777655
No 291
>PRK14643 hypothetical protein; Provisional
Probab=49.11 E-value=1.9e+02 Score=26.72 Aligned_cols=92 Identities=9% Similarity=-0.000 Sum_probs=60.3
Q ss_pred chHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEc---cCCCCCCChhHHHHHHHHHHHHHh--hccCCceEEEEEe
Q 048063 304 RLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRH---IDGYALNTEGEKERVIKCLEAAIE--RRVCEGVRLELCA 377 (484)
Q Consensus 304 gLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~---~~g~~~~~~~~~e~l~~~L~~~l~--rr~~~~t~leV~a 377 (484)
.+-.-+..++..+|+.+.+......++ ..+ ..+|.+ .+|. + ..+..+.+.+.+.+.|. -..+..|.+||++
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~~~~~~~~l-rV~Id~~~~~~gg-v-tldDC~~vSr~is~~LD~~d~i~~~Y~LEVSS 86 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNLKEFENDMI-QILVEDILQANKP-L-DFDILIKANDLVSNKIDQFIKTSEKYLLEISS 86 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEecCCCcCCC-c-CHHHHHHHHHHHHHHhCccCCCCCCeEEEecC
Confidence 345566778899999999999988776 444 444543 3332 3 34467788888888774 3455689999998
Q ss_pred cCCcchHHHHHHHHHhCCceE
Q 048063 378 ANRVGLLSDITRVLRENGLAV 398 (484)
Q Consensus 378 ~DRpGLL~~It~~f~~~gi~I 398 (484)
+.=-.-|...-.+-+-.|=.+
T Consensus 87 PGleRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 87 SGIEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCCCCCCHHHHHHhcCCeE
Confidence 644444555555555555433
No 292
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=49.02 E-value=96 Score=24.88 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=43.9
Q ss_pred EEEEEecCCcchHH----HHHHHHHhCCce-EEEEEeeecCCeeeeEEEEEc-CCCCCCChHHHHHHHHHhCCCceEE
Q 048063 372 RLELCAANRVGLLS----DITRVLRENGLA-VVRAHVATKGEKSVNAFYLRD-ISGNEVDMDFVESMKKEILGPIDLA 443 (484)
Q Consensus 372 ~leV~a~DRpGLL~----~It~~f~~~gi~-I~~A~i~T~g~~a~d~F~v~~-~~g~~l~~~~~~~l~~~L~~~~~~~ 443 (484)
.++|.-.-+||++- .|.+.|.++|++ +...++..+ |.+.- .+....+.++.+.+++.||...+++
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k~-------~~l~~~~~~~~~a~~~v~~i~~~lL~Npvie 72 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGKY-------FELELEGESEEKAEADLKEMCEKLLANPVIE 72 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEE-------EEEEEcCCchhhhHHHHHHHHHHhcCCceee
Confidence 45666667888874 477788889887 666665444 77742 2223455667888988887776654
No 293
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=48.62 E-value=1.3e+02 Score=37.51 Aligned_cols=72 Identities=14% Similarity=0.234 Sum_probs=54.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEE---EEecCC--eEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 35 EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSY---ISSDAG--WFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 35 ~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~---Itt~~g--~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
.+.+.+.++.+.++..|.++..+|..+|+.|++.+ |...+| ..+..|.+..+.+......+..+.+++++..
T Consensus 487 ~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 487 PGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999887 333333 5667788887766544444556666666543
No 294
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=48.61 E-value=64 Score=26.23 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=40.3
Q ss_pred eEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeec--CCeeeeEEEE
Q 048063 371 VRLELCAANRVGLLSDITRVLRENGLAVVRAHVATK--GEKSVNAFYL 416 (484)
Q Consensus 371 t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~--g~~a~d~F~v 416 (484)
|.+++.+.++|+.|..|-++-.-.|..+-....++. ++.+.-.|.|
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 779999999999999999999999999998888876 5666666766
No 295
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.26 E-value=71 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=35.7
Q ss_pred cCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCC--hHHHHHHHHHh
Q 048063 378 ANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVD--MDFVESMKKEI 436 (484)
Q Consensus 378 ~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~--~~~~~~l~~~L 436 (484)
.+.||++++|-++|+++||+|..... ++ ..=.|.+...+...+. .+..++|+++|
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~~sd~~~~~~~~~~l~~~~~~~ 68 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLDPSKLWSRELIQQELDHVVEEL 68 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEEhhhhhhhhhHHHHHHHHHHHH
Confidence 47799999999999999999999852 33 3345666543321110 12445666655
No 296
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=48.24 E-value=40 Score=35.36 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=53.5
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCC---------------------eeeeEEEEEcCCCCCCCh-H--
Q 048063 372 RLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGE---------------------KSVNAFYLRDISGNEVDM-D-- 427 (484)
Q Consensus 372 ~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~---------------------~a~d~F~v~~~~g~~l~~-~-- 427 (484)
.++|.|.||-||..++-..|...+|++...+|.-.|. +..-+|-++.. +-..++ +
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V-~~mPseR~hl 80 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTV-PWMPSEREHL 80 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCCeEEEeccccCHHHHHHHHHHHhcCCCccceeee-cCCcchhHhH
Confidence 4899999999999999999999999999999954431 11222333222 111111 1
Q ss_pred HHHHHHHHhCCCceEEe--ecCCCCCCCC
Q 048063 428 FVESMKKEILGPIDLAV--KNDSRSTSPS 454 (484)
Q Consensus 428 ~~~~l~~~L~~~~~~~~--~~~~~~~~~~ 454 (484)
+..+|-+++ -+.|+++ |+.--++||.
T Consensus 81 ~L~aLL~al-~~pVlsvd~kg~v~~aNpA 108 (511)
T COG3283 81 ALSALLEAL-PEPVLSVDMKGKVDMANPA 108 (511)
T ss_pred HHHHHHHhC-CCceEEecccCceeecCHH
Confidence 345666677 7778888 7776666444
No 297
>PRK09224 threonine dehydratase; Reviewed
Probab=48.08 E-value=3e+02 Score=30.10 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=71.6
Q ss_pred ceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH-Hh-----
Q 048063 291 GYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA-IE----- 364 (484)
Q Consensus 291 ~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~-l~----- 364 (484)
....+.|.-|||||=|.++++.|. +.||.+-.-...+......|+..+..+. +...+.|.+.|++. +.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 345788999999999999999999 6788776653333222334554443332 11266777777553 10
Q ss_pred ---------h-----ccC---CceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecC
Q 048063 365 ---------R-----RVC---EGVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKG 407 (484)
Q Consensus 365 ---------r-----r~~---~~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g 407 (484)
| +.+ .--.+.+.=+.|||-|-++..+|. -+-||...+=+-.|
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~ 459 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHG 459 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCC
Confidence 1 111 134678888999999999888776 66788777764333
No 298
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=46.84 E-value=1.3e+02 Score=23.20 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=27.0
Q ss_pred EEEEEe---cCCCchHHHHHHHHHhCCCeEEEEEEEe
Q 048063 135 AIEMTG---TDRPGLFSEISAALADLHCNIVEAHAWS 168 (484)
Q Consensus 135 ~i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~i~T 168 (484)
.|++.+ .+.+|+++++..+|+++++++......+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 455643 4789999999999999999998775443
No 299
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=45.99 E-value=53 Score=25.29 Aligned_cols=32 Identities=3% Similarity=0.291 Sum_probs=23.2
Q ss_pred HHHHHhCCceEEEEEEEecCCeEEEEEEEeeC
Q 048063 55 VQVLTDMNLTISKSYISSDAGWFMDVFHVKDE 86 (484)
Q Consensus 55 a~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~ 86 (484)
...+..+|..+..=.++|.|||++..+.+...
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~ 33 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPG 33 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SB
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCC
Confidence 45678899999998999999999999999654
No 300
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=45.62 E-value=2.8e+02 Score=30.34 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=68.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccCC-C-----
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTTG-E----- 109 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~~-~----- 109 (484)
....+.|.-|||||-|.+++.+|.. .||..-.-.-.+.....+|....-. +.+..+.|.+.|.... .
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-----~~~~~~~l~~~L~~~Gy~~~dls 396 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-----NPQERQEILARLNDGGYSVVDLT 396 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcCCCeEECC
Confidence 4467889999999999999999997 5888777643222223344433322 2346677777776531 0
Q ss_pred ----C----CCccccccccceeeecCCCCCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEE
Q 048063 110 ----I----PSSAVAKTYTNKAVFGSEYPSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHA 166 (484)
Q Consensus 110 ----~----~~~~~~~~~~~v~v~~~~~~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i 166 (484)
. +++. ...++. ..+--.+.+.-+-|||-|-+.-.+| .-+.||..-+=
T Consensus 397 ~ne~~k~h~r~~~-g~~~~~--------~~~e~~~~~~fperpgaL~~Fl~~l-~~~~~It~f~Y 451 (499)
T TIGR01124 397 DDELAKLHVRYMV-GGRPPH--------VENERLYSFEFPERPGALLRFLNTL-QGYWNISLFHY 451 (499)
T ss_pred CCHHHHHHHHhcc-CCCCCC--------CCCceEEEEeCCCCccHHHHHHHhc-CCCCceeeEEE
Confidence 0 0110 000111 1234577888999999888876633 33446655554
No 301
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=45.16 E-value=26 Score=38.48 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=33.1
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063 135 AIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHN 170 (484)
Q Consensus 135 ~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~ 170 (484)
.++|.|.||.|+..+|...|..+++|+....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999997653
No 302
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.05 E-value=62 Score=23.48 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=25.4
Q ss_pred EEEEe---cCCcchHHHHHHHHHhCCceEEEEE
Q 048063 373 LELCA---ANRVGLLSDITRVLRENGLAVVRAH 402 (484)
Q Consensus 373 leV~a---~DRpGLL~~It~~f~~~gi~I~~A~ 402 (484)
|.|.+ .+.||+++++...|.++++++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 55654 3679999999999999999998876
No 303
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=44.18 E-value=66 Score=23.33 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=30.4
Q ss_pred EEEEe---cCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEc
Q 048063 373 LELCA---ANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418 (484)
Q Consensus 373 leV~a---~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~ 418 (484)
|.|.+ .+.||+++++...|.+.||++.....+ + ..=.|.+.+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~--~~is~~v~~ 47 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS--E--IKISCLIDE 47 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc--C--ceEEEEEeH
Confidence 55554 467999999999999999999887632 1 223466654
No 304
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=44.11 E-value=1e+02 Score=24.23 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=34.0
Q ss_pred CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 379 NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 379 DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
-.||++++|-++|+++||++..... ++ ..=.|.+.. . .+.++..++|.++|
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~-~~~~~~l~~l~~el 63 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--E-NAEDTNLDAAVKDL 63 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--h-hcChHHHHHHHHHH
Confidence 4599999999999999999998853 33 333455533 2 22333556666666
No 305
>PRK14632 hypothetical protein; Provisional
Probab=43.98 E-value=2.4e+02 Score=26.29 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=55.1
Q ss_pred hHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEec--CC
Q 048063 305 LMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAA--NR 380 (484)
Q Consensus 305 Ll~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~--DR 380 (484)
+-.-+..++.++|+.+.+..+...++..+-.| |-..+|- +.+..+.+.+.+.+.|.. ..+..|.|||+++ ||
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV~-ID~~~GV---~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRLF-VDGPEGV---TIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEE-EECCCCC---CHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 45566778899999999999864334444444 4334442 345778888888888742 3456899999986 55
Q ss_pred cchHHHHHHHHHhCC
Q 048063 381 VGLLSDITRVLRENG 395 (484)
Q Consensus 381 pGLL~~It~~f~~~g 395 (484)
| |...-.+-+-.|
T Consensus 86 p--L~~~~~f~r~iG 98 (172)
T PRK14632 86 P--FFRAEQMSPYVG 98 (172)
T ss_pred c--CCCHHHHHHhCC
Confidence 5 444444444444
No 306
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.71 E-value=1.2e+02 Score=21.84 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=24.8
Q ss_pred EEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 136 IEMTG---TDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 136 i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
|+|.+ .+.||++.++...|+++|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45554 4779999999999999999997765
No 307
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=43.45 E-value=1.4e+02 Score=26.46 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=44.2
Q ss_pred HHHHHhhCCceEEEEEEEecCCe-EEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhh--ccCCceEEEEEecCCcchHH
Q 048063 309 TVCTLTDMQYVVFHASIGCHGDY-AFQEYFIRHIDGYALNTEGEKERVIKCLEAAIER--RVCEGVRLELCAANRVGLLS 385 (484)
Q Consensus 309 i~~~L~~~~l~I~~A~i~t~~g~-a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~r--r~~~~t~leV~a~DRpGLL~ 385 (484)
+...+..+|+.+.+..+...++. .+..|+= . ++. + +.+..+.+.+.+.+.|.. ..+..|.+||+++.=-.-|.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id-~-~~g-v-~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~ 77 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFID-K-DGG-V-SLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLK 77 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE---SS-----HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--S
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEE-e-CCC-C-CHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCC
Confidence 35678899999999999887764 4444433 3 333 2 344677777777777754 34568999999864333343
Q ss_pred HHHHHHHhCC
Q 048063 386 DITRVLRENG 395 (484)
Q Consensus 386 ~It~~f~~~g 395 (484)
..-++-+-.|
T Consensus 78 ~~~~~~~~iG 87 (141)
T PF02576_consen 78 SPRDFERFIG 87 (141)
T ss_dssp SHHHHHHH-S
T ss_pred CHHHHHHhcC
Confidence 3333333334
No 308
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=43.40 E-value=75 Score=37.58 Aligned_cols=91 Identities=10% Similarity=0.123 Sum_probs=56.9
Q ss_pred Chhhhccccccc---CCceEEEEecCC-CCCeEEEEE---EecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCeEEEEE
Q 048063 10 DPEFDTLPERIY---GPTCRVCIDNES-MEDCTVVKV---DSVSKQGLLLEMVQVLTDMNLTISKSYISS-DAGWFMDVF 81 (484)
Q Consensus 10 ~~~~~~l~~~~~---~p~~~V~i~~~~-~~~~t~I~V---~~~DrpGLfa~ia~vL~~~glnI~~A~Itt-~~g~~~d~F 81 (484)
...|..++.+.. .| .+.+.... ......+.+ -.+...|+|..++.++..+||.+..+++-+ .+|..+-+|
T Consensus 201 ~~~y~~~~~~~~~~~g~--~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~ 278 (1002)
T PTZ00324 201 KEIIQELLNRQVSSVGP--VLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTF 278 (1002)
T ss_pred HHHHHHHHHHHHhcCCC--eEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEE
Confidence 344444444322 46 55555443 222223333 345566899999999999999999999855 688888899
Q ss_pred EEeeCCCCCCCcHHHHHHHHH
Q 048063 82 HVKDEHGNKLTDQKVINYIQQ 102 (484)
Q Consensus 82 ~V~d~~g~~~~~~~~~~~L~~ 102 (484)
+|....+....+...++.+++
T Consensus 279 yv~~~~~~~~~~~~~~~~~~~ 299 (1002)
T PTZ00324 279 FIRGLTADDNPDLSIEDRASL 299 (1002)
T ss_pred EEecCCCCCcccccHHHHHHh
Confidence 998654432222334455544
No 309
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=43.05 E-value=1.5e+02 Score=31.38 Aligned_cols=66 Identities=11% Similarity=0.028 Sum_probs=43.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccC
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS--DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTT 107 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt--~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~ 107 (484)
....+.+.-|||||-|.+++..+...+.||..-+-.. .-+..--.+.+. . .+++..+.|.+.|.+.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE-~-----~~~~h~~~i~~~L~~~ 391 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIE-L-----NDKEDFAGLLERMAAA 391 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEE-e-----CCHHHHHHHHHHHHHC
Confidence 4568899999999999999997777888999766542 122221112222 1 1245667777777664
No 310
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=42.27 E-value=3.7e+02 Score=31.40 Aligned_cols=102 Identities=9% Similarity=0.026 Sum_probs=65.2
Q ss_pred CceeEEEEEeC---CCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH-Hhh
Q 048063 290 KGYSIVSVDCK---DRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA-IER 365 (484)
Q Consensus 290 ~~~t~V~V~~~---DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~-l~r 365 (484)
.+.+.|.|.+. +.+|.++++..+|.+.|++|..-..++. +. .-.|.+.. ...+.+.+.|++. ...
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~---------~~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTS---------EVADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeH---------HHHHHHHHHHHhhcCCC
Confidence 45567777765 7789999999999999999976543322 22 11233321 1233333333331 111
Q ss_pred c---cCCceEEEEEec---CCcchHHHHHHHHHhCCceEEEEE
Q 048063 366 R---VCEGVRLELCAA---NRVGLLSDITRVLRENGLAVVRAH 402 (484)
Q Consensus 366 r---~~~~t~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~ 402 (484)
+ ......|.|++. .+||+.+++..+|.+.+|++....
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~ 426 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQS 426 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEe
Confidence 1 112467888885 589999999999999999996554
No 311
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=42.08 E-value=1.3e+02 Score=23.68 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=34.9
Q ss_pred CCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 142 DRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 142 DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
-.||++++|..+|+++|+||..-- + ++ ..-.|.+... .+.+ +.++.|.+.|.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~~----~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHME----NAED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEehh----hcCh-HHHHHHHHHHHH
Confidence 569999999999999999998874 2 22 2233444332 2221 256677777766
No 312
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.51 E-value=1.6e+02 Score=22.45 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=25.7
Q ss_pred EEEEEEec--CCCchHHHHHHHHHhCCCeEEEEEE
Q 048063 134 TAIEMTGT--DRPGLFSEISAALADLHCNIVEAHA 166 (484)
Q Consensus 134 t~i~V~~~--DrpGLL~~Ia~vL~~~glnI~~A~i 166 (484)
..|.+.+. -+||+++++..+|.+.|+++.....
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 34555553 3689999999999999999977653
No 313
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=41.48 E-value=90 Score=27.95 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=39.1
Q ss_pred CceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEE-EecCCeEEEEEEE
Q 048063 290 KGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASI-GCHGDYAFQEYFI 338 (484)
Q Consensus 290 ~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i-~t~~g~a~d~f~V 338 (484)
..-.-+.++-.||.|.|+++..++++.+|||..-.. +-.+|.|--+..+
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 444678899999999999999999999999998887 4456766444433
No 314
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.42 E-value=46 Score=25.46 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=29.8
Q ss_pred EEEEec--CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeE-EEEE
Q 048063 373 LELCAA--NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNA-FYLR 417 (484)
Q Consensus 373 leV~a~--DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~-F~v~ 417 (484)
|.+.+. -+||+++++.++|.+.||++..... |...... |.|.
T Consensus 5 VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~---~~s~~~is~~V~ 49 (66)
T cd04915 5 VSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ---SMRNVDVQFVVD 49 (66)
T ss_pred EEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe---cCCeeEEEEEEE
Confidence 445443 2689999999999999999987764 4444444 5554
No 315
>PLN02550 threonine dehydratase
Probab=41.18 E-value=3.7e+02 Score=30.14 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=80.5
Q ss_pred eEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecC-CeEEEEEEEEccCCCCCCChhHHHHHHHHHHHH-Hh------
Q 048063 293 SIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHG-DYAFQEYFIRHIDGYALNTEGEKERVIKCLEAA-IE------ 364 (484)
Q Consensus 293 t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~-g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~-l~------ 364 (484)
..+.|.-+||||-|.+++..|... ||.+..-.... +.+ ..++..+..+ .+.+++|.+.|++. +.
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~-----~~~~~~i~~~l~~~g~~~~~l~~ 489 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGVHT-----EQELQALKKRMESAQLRTVNLTS 489 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEeCC-----HHHHHHHHHHHHHCCCCeEeCCC
Confidence 568899999999999999999986 88776663322 232 2333334332 34667777777664 10
Q ss_pred --------hccC--C-----ceEEEEEecCCcchHHHHHHHHHhC-CceEEEEEeeecCCeeeeEEEEEcCCCCCCChHH
Q 048063 365 --------RRVC--E-----GVRLELCAANRVGLLSDITRVLREN-GLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDF 428 (484)
Q Consensus 365 --------rr~~--~-----~t~leV~a~DRpGLL~~It~~f~~~-gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~ 428 (484)
|... + --.+.++=+.|||-|.++..+|... +|..++=+ ..|+....+|.=-.. .++.
T Consensus 490 ~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR--~~~~~~a~vlvGi~v-----~~~e 562 (591)
T PLN02550 490 NDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR--GQGETGANVLVGIQV-----PPEE 562 (591)
T ss_pred ChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee--cCCCCCccEEEEEee-----CHHH
Confidence 1111 1 2456788899999999999988873 66666655 345555556553221 1234
Q ss_pred HHHHHHHh
Q 048063 429 VESMKKEI 436 (484)
Q Consensus 429 ~~~l~~~L 436 (484)
.+.+.+.|
T Consensus 563 ~~~l~~~l 570 (591)
T PLN02550 563 MQEFKSRA 570 (591)
T ss_pred HHHHHHHH
Confidence 45555555
No 316
>PRK08841 aspartate kinase; Validated
Probab=40.73 E-value=1.1e+02 Score=32.31 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=70.0
Q ss_pred CceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhccCC
Q 048063 290 KGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERRVCE 369 (484)
Q Consensus 290 ~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr~~~ 369 (484)
.+.+.|.+.+ +.+.++...|.+.|+++..-. +.... -+|++.. ..++.++..+.+.+ .....
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~--~~~~v~~---------~~~~~~~~~~~~~i-~~~~~ 317 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADR--AQIVIKQ---------DACAKLKLVFDDKI-RNSES 317 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCc--EEEEECH---------HHHHHHHHhCcccE-EEeCC
Confidence 3455666644 357899999999998888542 22211 1234421 12333322211111 11123
Q ss_pred ceEEEEEecCCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHh
Q 048063 370 GVRLELCAANRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEI 436 (484)
Q Consensus 370 ~t~leV~a~DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L 436 (484)
...|.+.+...||+.+.+..+|.+.||+|....- ++ ..=.|.|...+. ...+..|.+++
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~---s~-~~is~vv~~~~~----~~av~~lH~~f 376 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST---EP-QSSMLVLDPANV----DRAANILHKTY 376 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC---CC-cEEEEEEeHHHH----HHHHHHHHHHH
Confidence 5779999999999999999999999999966552 22 333455532211 12445666666
No 317
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=40.34 E-value=1.1e+02 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEEEe---cCCcchHHHHHHHHHhCCceEEEEEeeec
Q 048063 372 RLELCA---ANRVGLLSDITRVLRENGLAVVRAHVATK 406 (484)
Q Consensus 372 ~leV~a---~DRpGLL~~It~~f~~~gi~I~~A~i~T~ 406 (484)
.|++.+ .+++|+++++.++|+++++++....-++.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~ 40 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASS 40 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCC
Confidence 456643 37899999999999999999988765433
No 318
>PRK14644 hypothetical protein; Provisional
Probab=38.71 E-value=2.2e+02 Score=25.43 Aligned_cols=75 Identities=9% Similarity=0.017 Sum_probs=51.1
Q ss_pred HHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHh--hccCCceEEEEEec--CCcchHH
Q 048063 311 CTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIE--RRVCEGVRLELCAA--NRVGLLS 385 (484)
Q Consensus 311 ~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~--rr~~~~t~leV~a~--DRpGLL~ 385 (484)
.++..+|+.+.+..+...++ ..+-.|+ +.. +.+..+.+.+.+.+.|. -..+..|.+||+++ |||= .
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~I--dk~-----~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL--~ 76 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVIL--NSR-----DLKDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMDY--E 76 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEE--CCC-----CHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCCC--C
Confidence 46789999999999987765 5554444 211 35577888888888874 34456899999985 8883 3
Q ss_pred HHHHHHHhCC
Q 048063 386 DITRVLRENG 395 (484)
Q Consensus 386 ~It~~f~~~g 395 (484)
. .++-+-.|
T Consensus 77 ~-~~f~r~~G 85 (136)
T PRK14644 77 T-DELENHIG 85 (136)
T ss_pred H-HHHHHhCC
Confidence 3 35444444
No 319
>PRK00907 hypothetical protein; Provisional
Probab=38.65 E-value=1.1e+02 Score=25.61 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=47.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE----EecCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccC
Q 048063 37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYI----SSDAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTT 107 (484)
Q Consensus 37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~I----tt~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~ 107 (484)
.+-|.|.+.+.+++...+..++..+.-......+ ++.|.|..-++.|.- ...+.++.|-+.|...
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~~ 85 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRDH 85 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 3789999999999999999999998776655555 335556555555542 3356778888888653
No 320
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=38.63 E-value=1.5e+02 Score=21.36 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=24.8
Q ss_pred EEEEe---cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 136 IEMTG---TDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 136 i~V~~---~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
|.|.+ .+.||++.++...|++.|+++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45543 4779999999999999999997765
No 321
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.47 E-value=1.8e+02 Score=21.89 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=21.6
Q ss_pred EEEEEec---CCCchHHHHHHHHHhCCCeE
Q 048063 135 AIEMTGT---DRPGLFSEISAALADLHCNI 161 (484)
Q Consensus 135 ~i~V~~~---DrpGLL~~Ia~vL~~~glnI 161 (484)
.|.+.+. +.||+++++..+|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 3556664 78999999999999987666
No 322
>PRK08639 threonine dehydratase; Validated
Probab=37.21 E-value=1.7e+02 Score=31.03 Aligned_cols=67 Identities=12% Similarity=-0.014 Sum_probs=43.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCe-EEEEEEEeeCCCCCCCcHHHHHHHHHHHccC
Q 048063 36 DCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGW-FMDVFHVKDEHGNKLTDQKVINYIQQAIGTT 107 (484)
Q Consensus 36 ~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~-~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~ 107 (484)
....+.+.-|||||-|.+++..+...+.||..-+-....+. .-.++...+- .+.+..+.|.+.|...
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~-----~~~~h~~~i~~~L~~~ 402 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIEL-----KDAEDYDGLIERMEAF 402 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEe-----CCHHHHHHHHHHHHHC
Confidence 45688999999999999999977777779998765321111 1122222221 1234667788888664
No 323
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=37.19 E-value=1.9e+02 Score=22.66 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=39.4
Q ss_pred EEecCCcchH----HHHHHHHHhCCce-EEEEEeeecCCeeeeEEEEEcCCCCCCChHHHHHHHHHhCCCceEEe
Q 048063 375 LCAANRVGLL----SDITRVLRENGLA-VVRAHVATKGEKSVNAFYLRDISGNEVDMDFVESMKKEILGPIDLAV 444 (484)
Q Consensus 375 V~a~DRpGLL----~~It~~f~~~gi~-I~~A~i~T~g~~a~d~F~v~~~~g~~l~~~~~~~l~~~L~~~~~~~~ 444 (484)
|.-.-+||++ ..|.+.|.++|++ +..+++... |.+ +| ++.++.+.+.+.|+...+++.
T Consensus 5 v~V~~k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~-------~~l---~~--~~~~~~~~i~~~lL~Npvie~ 67 (73)
T PRK06423 5 VEVTYKPGVEDPEALTILKNLNILGYNGIKGVSISKV-------YYF---DA--DSYNEVDEIAGKILTNPVIHS 67 (73)
T ss_pred EEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEE-------EEE---ec--CCHHHHHHHHHHhcCCceeeE
Confidence 3344578877 4577888889986 666665444 887 34 456677888888877766553
No 324
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.30 E-value=42 Score=26.96 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=23.5
Q ss_pred ecCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 140 GTDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 140 ~~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
.++.||++++|..+|+++|+||....
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 36889999999999999999998874
No 325
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.81 E-value=2.1e+02 Score=26.23 Aligned_cols=77 Identities=12% Similarity=0.138 Sum_probs=52.5
Q ss_pred CchHHHHHHHHhhCCceEEEEEEEecCC-eEEEEEEEEccCCCCCCChhHHHHHHHHHHHHHhhc--cCCceEEEEEec-
Q 048063 303 PRLMFDTVCTLTDMQYVVFHASIGCHGD-YAFQEYFIRHIDGYALNTEGEKERVIKCLEAAIERR--VCEGVRLELCAA- 378 (484)
Q Consensus 303 pgLl~~i~~~L~~~~l~I~~A~i~t~~g-~a~d~f~V~~~~g~~~~~~~~~e~l~~~L~~~l~rr--~~~~t~leV~a~- 378 (484)
..++.-+-..+.++|+.+.+..+...++ ..+..|+=.. .|- +.+..+.+.+.+...|..- .+..|.+||+++
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~v---~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPG 83 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GGV---TLDDCADVSRAISALLDVEDPIEGAYFLEVSSPG 83 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CCC---CHHHHHHHHHHHHHHhccCCcccccEEEEeeCCC
Confidence 3455666778899999999999988874 6655543322 332 2346777777777777533 344799999985
Q ss_pred -CCcch
Q 048063 379 -NRVGL 383 (484)
Q Consensus 379 -DRpGL 383 (484)
|||=.
T Consensus 84 ldRpL~ 89 (153)
T COG0779 84 LDRPLK 89 (153)
T ss_pred CCCCcC
Confidence 67743
No 326
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.25 E-value=2.8e+02 Score=30.29 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=43.6
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEecCCeeEEEEEEEeCCCCCCCCChhHHHHHHHHHHH
Q 048063 130 PSEHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWSHNDRLACVAYVSDQSTDTPIDDPGRLATIEEYITT 203 (484)
Q Consensus 130 ~~~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T~~~~~~dvF~V~~~~~g~~i~d~~~~~~l~~~L~~ 203 (484)
+.....+.|.-+||||-|.+++.+|.. .||...+=.-.+.....+|..-.. .+++..+.|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~------~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL------SNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 446778899999999999999999997 466655533223233344443222 135677777777655
No 327
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=30.93 E-value=1.7e+02 Score=23.80 Aligned_cols=51 Identities=10% Similarity=-0.026 Sum_probs=37.2
Q ss_pred CceeEEEEEeCCCCchHHHHHHHHhhCCceEEEEEEEecCCeEEEEEEEEccCCCCC
Q 048063 290 KGYSIVSVDCKDRPRLMFDTVCTLTDMQYVVFHASIGCHGDYAFQEYFIRHIDGYAL 346 (484)
Q Consensus 290 ~~~t~V~V~~~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~g~~~ 346 (484)
.....+.+.+.| +..+.+.|..+|++|........++. ..|++.+++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 345567778888 77788889999999987654433222 3699999999854
No 328
>PRK02047 hypothetical protein; Provisional
Probab=30.02 E-value=2.4e+02 Score=23.28 Aligned_cols=65 Identities=12% Similarity=0.101 Sum_probs=46.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe----cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHccC
Q 048063 37 CTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS----DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGTT 107 (484)
Q Consensus 37 ~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt----~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~~ 107 (484)
.+.+.|.+++.+++...+..++..+...+..+.+++ .|.|..-++.|. +.+.+.+..|-+.|...
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~------v~s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR------ATSREQLDNIYRALTGH 84 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhhC
Confidence 478999999999999999999999977766666633 445555444443 23345667777777653
No 329
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=29.88 E-value=86 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=25.2
Q ss_pred EEEEEe-cCCCchHHHHHHHHHhCCCeEEEEE
Q 048063 135 AIEMTG-TDRPGLFSEISAALADLHCNIVEAH 165 (484)
Q Consensus 135 ~i~V~~-~DrpGLL~~Ia~vL~~~glnI~~A~ 165 (484)
.|+|.+ ++.||.+++|.+.|+++|+||..-.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~ 34 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLIN 34 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence 344553 3669999999999999999999883
No 330
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=29.87 E-value=3.2e+02 Score=24.09 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=30.7
Q ss_pred CCCCeEEEEEEec---CCCchHHHHHHHHHhCCCeEEEEEEEecC
Q 048063 129 YPSEHTAIEMTGT---DRPGLFSEISAALADLHCNIVEAHAWSHN 170 (484)
Q Consensus 129 ~~~~~t~i~V~~~---DrpGLL~~Ia~vL~~~glnI~~A~i~T~~ 170 (484)
.+.+-..+.+.++ |-+|+|+.|.+.|+++|+.|--.. |++
T Consensus 59 ~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS--tyd 101 (128)
T COG3603 59 IEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS--TYD 101 (128)
T ss_pred ecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE--ecc
Confidence 3445566666654 899999999999999999997544 554
No 331
>PRK00907 hypothetical protein; Provisional
Probab=29.71 E-value=2.7e+02 Score=23.21 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=37.7
Q ss_pred CeEEEEEEecCCCchHHHHHHHHHhCCCeEEEEEEEe---cCCe-eEEEEEEEeC
Q 048063 132 EHTAIEMTGTDRPGLFSEISAALADLHCNIVEAHAWS---HNDR-LACVAYVSDQ 182 (484)
Q Consensus 132 ~~t~i~V~~~DrpGLL~~Ia~vL~~~glnI~~A~i~T---~~~~-~~dvF~V~~~ 182 (484)
..+-|.|.+.++++|...|..++..+.-......+.. .+|+ ..-++.|+-.
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at 70 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE 70 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC
Confidence 3588999999999999999999999987776666643 2333 3355555543
No 332
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.65 E-value=1.3e+02 Score=22.66 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=30.8
Q ss_pred EEEEEec--CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeE-EEEE
Q 048063 372 RLELCAA--NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNA-FYLR 417 (484)
Q Consensus 372 ~leV~a~--DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~-F~v~ 417 (484)
.|.+.+. ..+|+++++-.+|.+.||+|..... |...... |.+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~---g~s~~sis~~v~ 48 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQ---GASKVNISLIVN 48 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEe---cCccceEEEEEe
Confidence 3455554 4689999999999999999988764 4444444 5553
No 333
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=28.85 E-value=1.4e+02 Score=22.98 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=24.4
Q ss_pred HHHHhhCCceEEEEEEEecCCeEEEEEEEEccC
Q 048063 310 VCTLTDMQYVVFHASIGCHGDYAFQEYFIRHID 342 (484)
Q Consensus 310 ~~~L~~~~l~I~~A~i~t~~g~a~d~f~V~~~~ 342 (484)
...+...|+.+..=.++|.+||.+..|-|-...
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999997765
No 334
>PRK14635 hypothetical protein; Provisional
Probab=26.88 E-value=5e+02 Score=23.82 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=56.9
Q ss_pred CCCCchHHHHHHHHhhCCceEEEEEEEecCCe-EEEEEEEEcc---CCCCCCChhHHHHHHHHHHHHHhhccC-CceEEE
Q 048063 300 KDRPRLMFDTVCTLTDMQYVVFHASIGCHGDY-AFQEYFIRHI---DGYALNTEGEKERVIKCLEAAIERRVC-EGVRLE 374 (484)
Q Consensus 300 ~DrpgLl~~i~~~L~~~~l~I~~A~i~t~~g~-a~d~f~V~~~---~g~~~~~~~~~e~l~~~L~~~l~rr~~-~~t~le 374 (484)
++...+-.-+...+. .|+.+.+..+...++. .+-.| |-.. +|. + ..+..+.+.+.+.+.|....+ ..|.||
T Consensus 3 ~~~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lrV~-ID~~~~~~~g-v-~lddC~~vSr~is~~LD~~d~~~~Y~LE 78 (162)
T PRK14635 3 VSEEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIEVV-LDNLEHPYGS-V-SLLECEQVSRKLKEELERISPDLDFTLK 78 (162)
T ss_pred CcHHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEEEE-EecCCCCCCC-c-CHHHHHHHHHHHHHHhCCCCCCCCeEEE
Confidence 334444555566664 6999999999777764 44444 3221 222 2 345778888888888854222 489999
Q ss_pred EEecCCcchHHHHHHHHHhCCceE
Q 048063 375 LCAANRVGLLSDITRVLRENGLAV 398 (484)
Q Consensus 375 V~a~DRpGLL~~It~~f~~~gi~I 398 (484)
|+++.=-.-|..--.+-+-.|-.+
T Consensus 79 VSSPGldRpL~~~~~~~r~~G~~v 102 (162)
T PRK14635 79 VSSAGAERKLRLPEDLDRFRGIPV 102 (162)
T ss_pred EcCCCCCCcCCCHHHHHHhCCCEE
Confidence 998633333444445555555444
No 335
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.42 E-value=1.4e+02 Score=22.50 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=28.0
Q ss_pred EEEEEec---CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeE-EEEE
Q 048063 372 RLELCAA---NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNA-FYLR 417 (484)
Q Consensus 372 ~leV~a~---DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~-F~v~ 417 (484)
.|.+.+. +.||+++++.++|.+.++++.+ +|...... |++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~-----~~~s~~~is~vv~ 46 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVS-----QAANDLNLTFVVD 46 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEE-----EeCCCCeEEEEEe
Confidence 3566664 6799999999999998777633 33344444 5553
No 336
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=23.23 E-value=1.5e+02 Score=22.62 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=30.9
Q ss_pred EEEEEec-CCcchHHHHHHHHHhCCceEEEEEeeecCCeeeeEEEEEc
Q 048063 372 RLELCAA-NRVGLLSDITRVLRENGLAVVRAHVATKGEKSVNAFYLRD 418 (484)
Q Consensus 372 ~leV~a~-DRpGLL~~It~~f~~~gi~I~~A~i~T~g~~a~d~F~v~~ 418 (484)
.|.|... +.||.+++|-..|.++||+|...... .+ .=.|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEch
Confidence 3455544 55999999999999999999999332 22 34577743
No 337
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=21.14 E-value=3.2e+02 Score=22.05 Aligned_cols=51 Identities=6% Similarity=-0.147 Sum_probs=36.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCeEEEEEEEeeCCCCCC
Q 048063 35 EDCTVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISSDAGWFMDVFHVKDEHGNKL 91 (484)
Q Consensus 35 ~~~t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt~~g~~~d~F~V~d~~g~~~ 91 (484)
.....+.+...| +.++...|..+|.+|........++ . ..|++.|++|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~-~-~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGV-G-RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCc-E-EEEEEECCCCCEE
Confidence 455677888887 6777788889999998654433322 2 4699999999753
No 338
>PRK00341 hypothetical protein; Provisional
Probab=20.68 E-value=4e+02 Score=22.04 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=43.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe----cCCeEEEEEEEeeCCCCCCCcHHHHHHHHHHHcc
Q 048063 38 TVVKVDSVSKQGLLLEMVQVLTDMNLTISKSYISS----DAGWFMDVFHVKDEHGNKLTDQKVINYIQQAIGT 106 (484)
Q Consensus 38 t~I~V~~~DrpGLfa~ia~vL~~~glnI~~A~Itt----~~g~~~d~F~V~d~~g~~~~~~~~~~~L~~~L~~ 106 (484)
+.+.|.+.+.+++-..+..++..+. .+....+++ .|.|..-.+.|. +.+++.+..|-+.|..
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~------~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV------ATDEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 7899999999999999999998876 666555532 344554444444 2234566777777765
Done!