Query 048064
Match_columns 429
No_of_seqs 282 out of 2745
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9.1E-68 2E-72 574.2 42.7 426 1-428 95-537 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.4E-42 1.8E-46 354.4 25.9 300 93-397 161-499 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-37 2.5E-42 291.9 14.5 259 95-358 1-283 (287)
4 PRK04841 transcriptional regul 99.8 2.8E-17 6.2E-22 177.8 28.7 292 87-396 11-335 (903)
5 COG2909 MalT ATP-dependent tra 99.7 1.2E-15 2.5E-20 152.6 23.2 293 87-397 16-342 (894)
6 PRK00411 cdc6 cell division co 99.6 8.3E-13 1.8E-17 129.3 26.1 279 85-374 25-358 (394)
7 TIGR02928 orc1/cdc6 family rep 99.5 1.6E-11 3.4E-16 119.0 28.4 277 87-374 12-350 (365)
8 COG3899 Predicted ATPase [Gene 99.5 6.1E-13 1.3E-17 139.9 19.4 320 91-421 1-407 (849)
9 PF01637 Arch_ATPase: Archaeal 99.5 7.3E-14 1.6E-18 126.4 10.9 190 92-285 1-233 (234)
10 PRK00080 ruvB Holliday junctio 99.5 4.9E-13 1.1E-17 127.2 16.0 257 87-378 22-314 (328)
11 TIGR00635 ruvB Holliday juncti 99.5 1.3E-12 2.9E-17 123.3 18.2 253 90-379 4-294 (305)
12 PF05729 NACHT: NACHT domain 99.3 1.9E-11 4.2E-16 104.3 13.1 143 110-255 1-163 (166)
13 TIGR03015 pepcterm_ATPase puta 99.3 4.9E-10 1.1E-14 103.8 23.1 176 108-290 42-242 (269)
14 COG3903 Predicted ATPase [Gene 99.3 2.6E-12 5.6E-17 119.7 7.0 286 104-397 9-318 (414)
15 PLN03194 putative disease resi 99.3 2E-12 4.3E-17 108.2 5.0 68 4-81 109-178 (187)
16 COG2256 MGS1 ATPase related to 99.2 2E-10 4.3E-15 106.6 14.0 172 87-283 21-209 (436)
17 PRK06893 DNA replication initi 99.2 8.4E-10 1.8E-14 99.3 17.3 155 108-290 38-207 (229)
18 PRK13342 recombination factor 99.2 6.4E-09 1.4E-13 102.0 22.3 178 87-289 9-199 (413)
19 TIGR03420 DnaA_homol_Hda DnaA 99.2 1.3E-09 2.8E-14 98.2 16.0 173 89-289 14-204 (226)
20 COG1474 CDC6 Cdc6-related prot 99.1 1.7E-08 3.7E-13 96.4 23.2 275 87-374 14-334 (366)
21 PRK07003 DNA polymerase III su 99.1 1.4E-08 3.1E-13 102.8 21.4 179 87-285 13-220 (830)
22 PRK08727 hypothetical protein; 99.1 1.2E-08 2.5E-13 92.1 17.4 168 90-285 19-203 (233)
23 PF05496 RuvB_N: Holliday junc 99.0 9.5E-09 2.1E-13 89.4 15.3 177 87-292 21-227 (233)
24 PRK14961 DNA polymerase III su 99.0 5.1E-08 1.1E-12 93.9 22.1 190 87-286 13-220 (363)
25 PRK00440 rfc replication facto 99.0 2.1E-08 4.6E-13 95.3 19.1 183 87-286 14-203 (319)
26 PRK12402 replication factor C 99.0 2.3E-08 5.1E-13 95.8 19.4 196 87-286 12-226 (337)
27 PF14516 AAA_35: AAA-like doma 99.0 2.1E-07 4.6E-12 88.4 25.4 199 87-292 8-245 (331)
28 PTZ00112 origin recognition co 99.0 2.4E-08 5.2E-13 101.9 19.3 277 87-374 752-1086(1164)
29 PRK08084 DNA replication initi 99.0 2.4E-08 5.3E-13 90.1 17.6 171 91-289 24-212 (235)
30 PRK14963 DNA polymerase III su 99.0 4.9E-08 1.1E-12 97.2 21.2 190 87-285 11-216 (504)
31 PRK12323 DNA polymerase III su 99.0 4.5E-08 9.7E-13 97.9 20.5 190 87-286 13-225 (700)
32 PLN03025 replication factor C 99.0 3.6E-08 7.9E-13 93.4 18.9 182 87-284 10-198 (319)
33 PRK04195 replication factor C 99.0 3.5E-08 7.7E-13 98.7 19.5 181 87-290 11-206 (482)
34 PRK14949 DNA polymerase III su 99.0 5.4E-08 1.2E-12 100.5 20.9 186 87-287 13-221 (944)
35 PRK07471 DNA polymerase III su 99.0 1.4E-07 3E-12 90.3 22.6 190 87-287 16-239 (365)
36 PRK14960 DNA polymerase III su 99.0 5.6E-08 1.2E-12 97.5 20.1 179 87-285 12-218 (702)
37 PRK08903 DnaA regulatory inact 99.0 2.1E-08 4.5E-13 90.4 15.5 178 80-290 9-203 (227)
38 PRK05642 DNA replication initi 98.9 4.7E-08 1E-12 88.2 16.8 154 109-290 45-212 (234)
39 PRK14964 DNA polymerase III su 98.9 2.2E-07 4.7E-12 91.6 22.3 179 87-285 10-216 (491)
40 PF13173 AAA_14: AAA domain 98.9 1.3E-08 2.8E-13 82.9 11.3 120 109-247 2-127 (128)
41 PRK14956 DNA polymerase III su 98.9 1.2E-07 2.6E-12 92.4 19.8 186 87-283 15-219 (484)
42 TIGR01242 26Sp45 26S proteasom 98.9 3.5E-08 7.6E-13 95.3 15.4 170 88-280 120-328 (364)
43 PRK05564 DNA polymerase III su 98.9 4.8E-08 1E-12 92.4 15.9 175 90-286 4-190 (313)
44 PRK06645 DNA polymerase III su 98.9 2.4E-07 5.2E-12 92.0 21.4 188 87-284 18-227 (507)
45 PRK14957 DNA polymerase III su 98.9 8E-08 1.7E-12 96.0 17.6 175 87-281 13-215 (546)
46 PRK07994 DNA polymerase III su 98.9 5.2E-08 1.1E-12 98.8 16.1 191 87-287 13-221 (647)
47 PRK13341 recombination factor 98.9 3.1E-07 6.7E-12 95.1 22.0 176 87-286 25-217 (725)
48 PRK09112 DNA polymerase III su 98.9 1.4E-07 3.1E-12 89.8 18.0 189 87-287 20-241 (351)
49 PF00308 Bac_DnaA: Bacterial d 98.9 8.8E-08 1.9E-12 85.4 15.5 163 109-289 34-211 (219)
50 PRK14958 DNA polymerase III su 98.9 1.9E-07 4.1E-12 93.3 19.3 180 87-286 13-220 (509)
51 PRK08691 DNA polymerase III su 98.9 1.5E-07 3.2E-12 95.3 18.4 191 87-287 13-221 (709)
52 PRK14951 DNA polymerase III su 98.9 4.3E-07 9.3E-12 92.0 21.7 190 87-286 13-225 (618)
53 TIGR02397 dnaX_nterm DNA polym 98.9 2.3E-07 5E-12 89.6 19.0 182 87-288 11-220 (355)
54 PRK14962 DNA polymerase III su 98.9 8.4E-07 1.8E-11 87.8 23.1 182 87-288 11-221 (472)
55 PRK09087 hypothetical protein; 98.8 1.8E-07 3.8E-12 83.8 16.6 145 108-289 43-198 (226)
56 COG2255 RuvB Holliday junction 98.8 3.3E-07 7.2E-12 81.6 17.6 257 87-379 23-316 (332)
57 PRK07764 DNA polymerase III su 98.8 4.5E-07 9.7E-12 95.1 20.5 188 87-284 12-219 (824)
58 PRK07940 DNA polymerase III su 98.8 2.3E-07 5E-12 89.6 16.8 168 90-286 5-213 (394)
59 PRK14952 DNA polymerase III su 98.8 6.3E-07 1.4E-11 90.5 20.1 189 87-282 10-215 (584)
60 PRK14087 dnaA chromosomal repl 98.8 2.3E-07 5E-12 91.5 16.5 166 110-290 142-323 (450)
61 KOG2028 ATPase related to the 98.8 5.8E-08 1.3E-12 89.0 11.2 173 87-280 135-330 (554)
62 PRK03992 proteasome-activating 98.8 2.7E-07 5.9E-12 89.6 16.6 168 89-279 130-336 (389)
63 TIGR02881 spore_V_K stage V sp 98.8 2.3E-07 5E-12 85.4 15.2 132 109-257 42-193 (261)
64 TIGR00678 holB DNA polymerase 98.8 5.2E-07 1.1E-11 78.7 16.7 148 109-281 14-186 (188)
65 cd00009 AAA The AAA+ (ATPases 98.8 7.1E-08 1.5E-12 80.1 10.6 120 93-225 1-130 (151)
66 PRK09111 DNA polymerase III su 98.8 7.4E-07 1.6E-11 90.5 19.8 191 87-287 21-234 (598)
67 PRK05896 DNA polymerase III su 98.8 4.1E-07 8.9E-12 91.2 17.6 187 87-285 13-219 (605)
68 PRK14955 DNA polymerase III su 98.8 4.8E-07 1E-11 88.3 17.7 194 87-286 13-228 (397)
69 PF13191 AAA_16: AAA ATPase do 98.7 4E-08 8.6E-13 85.4 9.0 46 91-136 1-51 (185)
70 PRK14969 DNA polymerase III su 98.7 2.7E-07 5.9E-12 92.8 15.7 177 87-283 13-217 (527)
71 PRK14970 DNA polymerase III su 98.7 2.4E-06 5.2E-11 82.8 21.7 181 87-286 14-209 (367)
72 KOG2227 Pre-initiation complex 98.7 6.8E-07 1.5E-11 84.9 16.7 199 87-290 147-372 (529)
73 PRK06620 hypothetical protein; 98.7 3.1E-07 6.7E-12 81.5 13.7 137 110-287 45-190 (214)
74 PRK14953 DNA polymerase III su 98.7 4.6E-06 9.9E-11 83.0 23.4 190 87-287 13-221 (486)
75 PTZ00202 tuzin; Provisional 98.7 5.4E-06 1.2E-10 79.1 22.4 157 87-255 259-434 (550)
76 PRK14950 DNA polymerase III su 98.7 1E-06 2.2E-11 90.2 19.1 191 87-288 13-223 (585)
77 PRK08451 DNA polymerase III su 98.7 4.6E-06 9.9E-11 83.1 22.4 184 87-287 11-219 (535)
78 PRK14959 DNA polymerase III su 98.7 2.5E-06 5.5E-11 86.0 20.8 183 87-289 13-224 (624)
79 PF13401 AAA_22: AAA domain; P 98.7 1.6E-07 3.5E-12 76.7 10.2 110 109-224 4-125 (131)
80 PRK14954 DNA polymerase III su 98.7 2.6E-06 5.6E-11 86.7 20.7 192 87-284 13-226 (620)
81 PRK07399 DNA polymerase III su 98.7 4.8E-06 1E-10 78.3 20.8 187 90-287 4-222 (314)
82 KOG0989 Replication factor C, 98.7 4.7E-06 1E-10 75.2 19.5 179 87-282 33-226 (346)
83 TIGR02639 ClpA ATP-dependent C 98.7 7.7E-07 1.7E-11 93.6 17.1 148 89-255 181-358 (731)
84 PRK07133 DNA polymerase III su 98.7 9.3E-07 2E-11 90.5 16.9 188 87-285 15-218 (725)
85 PRK06305 DNA polymerase III su 98.6 1.5E-06 3.2E-11 85.9 17.2 189 87-285 14-221 (451)
86 PRK14088 dnaA chromosomal repl 98.6 1.1E-06 2.5E-11 86.5 15.9 161 110-287 131-306 (440)
87 TIGR03345 VI_ClpV1 type VI sec 98.6 1.4E-06 3E-11 92.5 17.3 176 87-279 184-389 (852)
88 TIGR00362 DnaA chromosomal rep 98.6 1.3E-06 2.7E-11 85.9 16.0 161 109-287 136-311 (405)
89 PRK14971 DNA polymerase III su 98.6 1E-05 2.2E-10 82.8 22.9 179 87-285 14-221 (614)
90 TIGR02880 cbbX_cfxQ probable R 98.6 2.2E-06 4.7E-11 79.6 16.4 129 111-256 60-209 (284)
91 PTZ00454 26S protease regulato 98.6 1.9E-06 4.1E-11 83.5 16.4 177 87-286 142-358 (398)
92 PRK00149 dnaA chromosomal repl 98.6 1.3E-06 2.8E-11 86.9 15.7 160 109-286 148-322 (450)
93 PRK06647 DNA polymerase III su 98.6 8.6E-06 1.9E-10 82.4 21.5 188 87-286 13-220 (563)
94 PHA02544 44 clamp loader, smal 98.6 1.5E-06 3.3E-11 82.4 15.2 146 87-253 18-171 (316)
95 PRK05563 DNA polymerase III su 98.6 4.4E-06 9.5E-11 84.8 19.1 188 87-284 13-218 (559)
96 TIGR03689 pup_AAA proteasome A 98.6 1.1E-06 2.3E-11 87.1 14.2 155 87-255 179-378 (512)
97 CHL00181 cbbX CbbX; Provisiona 98.6 3.7E-06 8E-11 78.1 17.0 131 110-257 60-211 (287)
98 PRK14948 DNA polymerase III su 98.6 2.3E-05 4.9E-10 80.3 24.2 192 87-288 13-224 (620)
99 CHL00095 clpC Clp protease ATP 98.6 1.7E-06 3.8E-11 92.0 16.2 145 90-253 179-352 (821)
100 PRK14965 DNA polymerase III su 98.5 3.2E-06 7E-11 86.1 17.1 191 87-286 13-221 (576)
101 PRK12422 chromosomal replicati 98.5 6.9E-06 1.5E-10 80.9 18.4 152 110-280 142-307 (445)
102 PRK14086 dnaA chromosomal repl 98.5 3.4E-06 7.4E-11 84.7 15.6 160 110-287 315-489 (617)
103 PTZ00361 26 proteosome regulat 98.5 1.6E-06 3.4E-11 84.7 12.8 174 90-286 183-396 (438)
104 PRK05707 DNA polymerase III su 98.5 3.6E-06 7.9E-11 79.5 14.7 94 187-286 106-203 (328)
105 PF05673 DUF815: Protein of un 98.5 2.4E-05 5.3E-10 69.3 18.6 51 87-137 24-80 (249)
106 TIGR03346 chaperone_ClpB ATP-d 98.5 4.5E-06 9.7E-11 89.2 16.8 151 88-254 171-348 (852)
107 COG1222 RPT1 ATP-dependent 26S 98.5 4E-06 8.6E-11 77.3 13.5 170 90-282 151-359 (406)
108 CHL00176 ftsH cell division pr 98.4 8.8E-06 1.9E-10 83.4 17.3 177 88-287 181-396 (638)
109 PRK10865 protein disaggregatio 98.4 4.3E-06 9.3E-11 89.0 15.2 151 87-254 175-353 (857)
110 COG2812 DnaX DNA polymerase II 98.4 8.2E-06 1.8E-10 80.4 15.4 187 87-281 13-215 (515)
111 PF00004 AAA: ATPase family as 98.4 4E-06 8.7E-11 68.3 11.2 23 112-134 1-23 (132)
112 PRK11034 clpA ATP-dependent Cl 98.4 4.1E-06 9E-11 87.3 13.7 149 90-254 186-361 (758)
113 PF10443 RNA12: RNA12 protein; 98.4 0.00028 6.1E-09 67.5 24.3 101 188-292 149-284 (431)
114 TIGR01241 FtsH_fam ATP-depende 98.4 1.6E-05 3.5E-10 80.1 16.8 178 87-287 52-268 (495)
115 PRK08769 DNA polymerase III su 98.4 3.3E-05 7.2E-10 72.4 17.7 94 186-287 112-209 (319)
116 COG0593 DnaA ATPase involved i 98.4 1.6E-05 3.5E-10 76.1 15.6 152 109-279 113-279 (408)
117 CHL00195 ycf46 Ycf46; Provisio 98.3 2.2E-05 4.7E-10 78.0 15.6 172 88-280 226-429 (489)
118 PRK06871 DNA polymerase III su 98.3 4.7E-05 1E-09 71.5 16.9 173 99-283 11-200 (325)
119 PRK12377 putative replication 98.3 8.9E-06 1.9E-10 73.5 11.5 102 108-225 100-206 (248)
120 TIGR02903 spore_lon_C ATP-depe 98.3 1.6E-05 3.4E-10 81.7 14.6 47 87-133 151-199 (615)
121 COG1373 Predicted ATPase (AAA+ 98.3 1.9E-05 4.1E-10 76.9 14.4 239 93-372 20-268 (398)
122 PRK06090 DNA polymerase III su 98.3 9E-05 2E-09 69.5 18.1 158 99-286 12-201 (319)
123 PRK08116 hypothetical protein; 98.2 5.5E-06 1.2E-10 76.2 9.5 103 109-225 114-221 (268)
124 PRK08181 transposase; Validate 98.2 5.2E-06 1.1E-10 76.0 9.2 105 104-225 101-209 (269)
125 PRK07993 DNA polymerase III su 98.2 5.1E-05 1.1E-09 71.9 15.9 159 99-284 11-202 (334)
126 PRK08058 DNA polymerase III su 98.2 3.6E-05 7.7E-10 73.2 14.9 142 91-254 6-181 (329)
127 TIGR01243 CDC48 AAA family ATP 98.2 4.1E-05 8.9E-10 80.9 16.7 176 88-286 451-664 (733)
128 TIGR02640 gas_vesic_GvpN gas v 98.2 8.1E-05 1.8E-09 68.4 16.1 36 98-133 10-45 (262)
129 TIGR01243 CDC48 AAA family ATP 98.2 2.8E-05 6.1E-10 82.1 14.7 169 89-280 177-381 (733)
130 TIGR00602 rad24 checkpoint pro 98.2 1.3E-05 2.8E-10 81.7 11.4 48 87-134 81-135 (637)
131 KOG0730 AAA+-type ATPase [Post 98.2 1.7E-05 3.6E-10 78.7 11.5 169 91-281 435-638 (693)
132 PF05621 TniB: Bacterial TniB 98.2 8.5E-05 1.8E-09 68.0 15.4 186 97-286 44-261 (302)
133 cd01128 rho_factor Transcripti 98.2 5.3E-06 1.2E-10 75.1 7.5 90 108-200 15-116 (249)
134 KOG0733 Nuclear AAA ATPase (VC 98.2 5.8E-05 1.3E-09 74.2 14.5 49 89-137 189-251 (802)
135 COG0466 Lon ATP-dependent Lon 98.1 2.3E-05 4.9E-10 78.6 11.9 156 89-255 322-508 (782)
136 PRK07952 DNA replication prote 98.1 6E-05 1.3E-09 68.0 13.4 102 109-225 99-205 (244)
137 PRK06526 transposase; Provisio 98.1 5.5E-06 1.2E-10 75.4 6.4 30 107-136 96-125 (254)
138 PF01695 IstB_IS21: IstB-like 98.1 4.9E-06 1.1E-10 71.6 5.7 39 106-144 44-82 (178)
139 TIGR00763 lon ATP-dependent pr 98.1 0.00016 3.5E-09 76.7 18.1 48 90-137 320-375 (775)
140 PRK10536 hypothetical protein; 98.1 3.3E-05 7.1E-10 69.3 10.8 133 89-225 54-213 (262)
141 PRK09376 rho transcription ter 98.1 1E-05 2.2E-10 76.7 7.7 90 108-200 168-269 (416)
142 COG3267 ExeA Type II secretory 98.1 0.00057 1.2E-08 60.6 18.0 184 99-288 40-247 (269)
143 TIGR02639 ClpA ATP-dependent C 98.0 8.4E-05 1.8E-09 78.4 14.7 46 89-134 453-509 (731)
144 PRK06964 DNA polymerase III su 98.0 0.00039 8.4E-09 65.9 17.6 90 187-286 132-225 (342)
145 KOG2543 Origin recognition com 98.0 0.00013 2.8E-09 68.0 13.9 157 89-255 5-193 (438)
146 TIGR00767 rho transcription te 98.0 2.2E-05 4.7E-10 74.8 8.7 90 108-200 167-268 (415)
147 COG1484 DnaC DNA replication p 98.0 3.3E-05 7.2E-10 70.3 9.6 39 106-144 102-140 (254)
148 PLN00020 ribulose bisphosphate 98.0 0.00017 3.6E-09 67.8 14.0 153 108-281 147-333 (413)
149 TIGR03345 VI_ClpV1 type VI sec 98.0 0.00014 3E-09 77.5 15.0 48 89-136 565-623 (852)
150 PF13177 DNA_pol3_delta2: DNA 98.0 0.00016 3.5E-09 61.2 12.7 135 94-243 1-162 (162)
151 TIGR03346 chaperone_ClpB ATP-d 98.0 0.00055 1.2E-08 73.5 19.5 126 89-224 564-717 (852)
152 PRK09183 transposase/IS protei 98.0 4.7E-05 1E-09 69.7 9.9 36 108-143 101-136 (259)
153 smart00382 AAA ATPases associa 98.0 1.9E-05 4.2E-10 64.7 6.7 29 109-137 2-30 (148)
154 PRK06921 hypothetical protein; 98.0 2.4E-05 5.2E-10 71.8 7.6 36 109-144 117-153 (266)
155 PRK08939 primosomal protein Dn 97.9 0.00011 2.4E-09 68.8 11.6 115 94-225 135-261 (306)
156 PRK06835 DNA replication prote 97.9 6.6E-05 1.4E-09 70.9 10.0 37 108-144 182-218 (329)
157 KOG0731 AAA+-type ATPase conta 97.9 0.00025 5.3E-09 72.6 14.2 173 89-283 310-521 (774)
158 KOG0741 AAA+-type ATPase [Post 97.9 0.00014 3.1E-09 70.3 11.8 127 108-254 537-685 (744)
159 COG1223 Predicted ATPase (AAA+ 97.9 0.00039 8.5E-09 61.5 13.3 168 89-279 120-318 (368)
160 KOG0744 AAA+-type ATPase [Post 97.9 3.7E-05 8.1E-10 69.9 7.2 26 108-133 176-201 (423)
161 PRK10787 DNA-binding ATP-depen 97.9 0.0001 2.2E-09 77.7 11.4 155 90-255 322-506 (784)
162 PRK13531 regulatory ATPase Rav 97.9 0.00016 3.5E-09 70.7 11.8 47 89-135 19-65 (498)
163 PRK08699 DNA polymerase III su 97.9 0.00016 3.4E-09 68.4 11.4 87 187-283 113-203 (325)
164 PRK04132 replication factor C 97.9 0.00051 1.1E-08 72.2 16.1 158 113-287 568-732 (846)
165 KOG2228 Origin recognition com 97.9 0.00037 8E-09 64.0 13.1 165 90-255 24-219 (408)
166 PRK10865 protein disaggregatio 97.8 0.00042 9.1E-09 74.1 15.5 47 89-135 567-624 (857)
167 PRK11331 5-methylcytosine-spec 97.8 5.7E-05 1.2E-09 73.2 7.6 46 90-135 175-220 (459)
168 PRK10733 hflB ATP-dependent me 97.8 0.00049 1.1E-08 71.4 14.9 165 90-278 152-355 (644)
169 KOG0735 AAA+-type ATPase [Post 97.8 0.00046 9.9E-09 69.3 13.7 163 108-287 430-617 (952)
170 COG0470 HolB ATPase involved i 97.8 0.0019 4.1E-08 61.4 17.9 146 91-250 2-176 (325)
171 PRK11034 clpA ATP-dependent Cl 97.8 0.00033 7.1E-09 73.4 13.3 46 89-134 457-513 (758)
172 KOG2004 Mitochondrial ATP-depe 97.8 0.00023 4.9E-09 71.4 11.3 50 89-138 410-467 (906)
173 COG0542 clpA ATP-binding subun 97.8 0.00017 3.8E-09 74.2 10.6 113 89-211 490-619 (786)
174 TIGR01650 PD_CobS cobaltochela 97.8 0.0023 4.9E-08 59.9 17.0 51 87-137 42-92 (327)
175 TIGR02902 spore_lonB ATP-depen 97.7 0.00066 1.4E-08 68.7 14.5 47 87-133 62-110 (531)
176 KOG2035 Replication factor C, 97.7 0.0047 1E-07 55.4 17.6 206 90-307 13-260 (351)
177 COG0542 clpA ATP-binding subun 97.7 0.0006 1.3E-08 70.4 13.9 145 89-253 169-344 (786)
178 COG0464 SpoVK ATPases of the A 97.7 0.0037 7.9E-08 63.2 19.6 171 87-278 239-445 (494)
179 KOG1514 Origin recognition com 97.7 0.002 4.2E-08 64.9 16.7 165 88-257 394-591 (767)
180 PF14532 Sigma54_activ_2: Sigm 97.7 5.6E-05 1.2E-09 62.2 5.1 102 93-225 1-110 (138)
181 PRK12608 transcription termina 97.7 0.00023 5E-09 67.5 9.7 98 99-199 120-232 (380)
182 KOG0991 Replication factor C, 97.7 0.00054 1.2E-08 59.7 10.8 49 87-135 24-74 (333)
183 PRK11889 flhF flagellar biosyn 97.7 0.0012 2.5E-08 63.1 13.9 29 108-136 240-268 (436)
184 CHL00095 clpC Clp protease ATP 97.7 0.00028 6.1E-09 75.4 11.0 128 89-225 508-662 (821)
185 KOG0734 AAA+-type ATPase conta 97.7 0.0007 1.5E-08 65.8 12.4 146 90-255 304-484 (752)
186 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0011 2.3E-08 64.9 13.1 37 97-133 89-134 (634)
187 PRK04296 thymidine kinase; Pro 97.6 0.00012 2.7E-09 63.8 6.3 106 110-225 3-116 (190)
188 PF04665 Pox_A32: Poxvirus A32 97.6 0.00032 6.9E-09 62.7 8.9 37 108-144 12-48 (241)
189 KOG0733 Nuclear AAA ATPase (VC 97.6 0.0011 2.4E-08 65.6 13.1 129 108-256 544-693 (802)
190 KOG0739 AAA+-type ATPase [Post 97.6 0.0032 7E-08 57.0 15.0 169 87-280 130-335 (439)
191 PF00158 Sigma54_activat: Sigm 97.6 0.00024 5.2E-09 60.4 7.7 42 92-133 1-46 (168)
192 COG2607 Predicted ATPase (AAA+ 97.6 0.0022 4.9E-08 56.3 13.5 57 87-143 57-119 (287)
193 cd01131 PilT Pilus retraction 97.6 0.00038 8.2E-09 61.1 8.9 108 110-227 2-111 (198)
194 KOG0652 26S proteasome regulat 97.6 0.0029 6.2E-08 56.1 13.7 44 90-133 171-229 (424)
195 cd01133 F1-ATPase_beta F1 ATP 97.6 0.00053 1.1E-08 62.5 9.5 90 108-200 68-176 (274)
196 PRK12726 flagellar biosynthesi 97.5 0.0014 3E-08 62.3 12.5 36 108-143 205-240 (407)
197 KOG0728 26S proteasome regulat 97.5 0.0033 7.3E-08 55.4 13.8 145 91-255 147-331 (404)
198 cd01120 RecA-like_NTPases RecA 97.5 0.00032 7E-09 59.1 7.6 34 111-144 1-34 (165)
199 TIGR02974 phageshock_pspF psp 97.5 0.0034 7.3E-08 59.7 15.1 42 92-133 1-46 (329)
200 PRK00771 signal recognition pa 97.5 0.0036 7.9E-08 61.4 15.5 28 109-136 95-122 (437)
201 PF07693 KAP_NTPase: KAP famil 97.5 0.0064 1.4E-07 57.8 16.7 29 108-136 19-47 (325)
202 PF13207 AAA_17: AAA domain; P 97.5 9.5E-05 2.1E-09 59.3 3.5 23 111-133 1-23 (121)
203 PRK11608 pspF phage shock prot 97.5 0.0068 1.5E-07 57.6 16.6 43 90-132 6-52 (326)
204 PF07728 AAA_5: AAA domain (dy 97.5 5.1E-05 1.1E-09 62.5 1.7 22 112-133 2-23 (139)
205 KOG0738 AAA+-type ATPase [Post 97.5 0.0032 7E-08 59.1 13.3 66 65-134 191-270 (491)
206 PF02562 PhoH: PhoH-like prote 97.5 0.00055 1.2E-08 59.8 8.0 126 96-225 6-156 (205)
207 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00017 3.6E-09 68.1 5.0 46 90-135 51-104 (361)
208 cd01129 PulE-GspE PulE/GspE Th 97.4 0.00032 7E-09 64.4 6.8 101 98-208 68-170 (264)
209 TIGR01817 nifA Nif-specific re 97.4 0.0048 1E-07 63.0 16.0 48 87-134 193-244 (534)
210 PHA00729 NTP-binding motif con 97.4 0.00047 1E-08 60.9 7.4 27 108-134 16-42 (226)
211 KOG1969 DNA replication checkp 97.4 0.00039 8.5E-09 70.0 7.3 73 108-199 325-399 (877)
212 TIGR01420 pilT_fam pilus retra 97.4 0.00072 1.6E-08 64.7 9.0 116 101-225 113-230 (343)
213 PRK05022 anaerobic nitric oxid 97.4 0.012 2.6E-07 59.6 18.0 47 88-134 185-235 (509)
214 KOG0736 Peroxisome assembly fa 97.3 0.0078 1.7E-07 61.3 15.5 97 83-199 665-776 (953)
215 PRK07132 DNA polymerase III su 97.3 0.044 9.5E-07 51.1 19.6 162 100-285 6-184 (299)
216 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0018 3.9E-08 54.2 9.3 113 110-225 3-138 (159)
217 PRK06696 uridine kinase; Valid 97.3 0.00045 9.7E-09 61.9 6.0 42 95-136 3-49 (223)
218 PF10236 DAP3: Mitochondrial r 97.3 0.0074 1.6E-07 56.8 14.4 48 236-283 258-306 (309)
219 KOG0735 AAA+-type ATPase [Post 97.3 0.0097 2.1E-07 60.2 15.4 170 90-282 667-872 (952)
220 PRK10820 DNA-binding transcrip 97.3 0.0041 9E-08 63.0 13.3 46 87-132 201-250 (520)
221 COG1618 Predicted nucleotide k 97.3 0.00036 7.8E-09 57.3 4.3 30 110-139 6-36 (179)
222 PF13604 AAA_30: AAA domain; P 97.3 0.0015 3.3E-08 57.2 8.7 111 100-225 8-131 (196)
223 KOG0737 AAA+-type ATPase [Post 97.3 0.0053 1.2E-07 57.4 12.4 51 89-139 91-157 (386)
224 PRK15429 formate hydrogenlyase 97.3 0.018 3.8E-07 60.7 18.0 44 90-133 376-423 (686)
225 KOG0743 AAA+-type ATPase [Post 97.2 0.0098 2.1E-07 57.2 14.2 150 109-290 235-413 (457)
226 PF03215 Rad17: Rad17 cell cyc 97.2 0.0049 1.1E-07 61.9 12.8 43 91-133 20-69 (519)
227 KOG0729 26S proteasome regulat 97.2 0.0022 4.8E-08 57.0 8.9 51 91-146 178-243 (435)
228 TIGR03499 FlhF flagellar biosy 97.2 0.0026 5.5E-08 59.1 9.8 29 108-136 193-221 (282)
229 PF00448 SRP54: SRP54-type pro 97.2 0.00067 1.4E-08 59.3 5.5 35 109-143 1-35 (196)
230 PRK14974 cell division protein 97.2 0.015 3.2E-07 55.2 14.9 29 108-136 139-167 (336)
231 cd03247 ABCC_cytochrome_bd The 97.2 0.0041 8.8E-08 53.6 10.2 124 108-239 27-169 (178)
232 cd01121 Sms Sms (bacterial rad 97.2 0.0023 5.1E-08 61.6 9.4 89 101-197 70-168 (372)
233 TIGR01425 SRP54_euk signal rec 97.1 0.016 3.4E-07 56.6 15.0 28 109-136 100-127 (429)
234 KOG0651 26S proteasome regulat 97.1 0.0066 1.4E-07 55.4 11.1 48 90-137 132-194 (388)
235 PRK08118 topology modulation p 97.1 0.00045 9.8E-09 58.8 3.5 25 110-134 2-26 (167)
236 PRK14722 flhF flagellar biosyn 97.1 0.0037 8.1E-08 59.8 9.8 29 108-136 136-164 (374)
237 TIGR00959 ffh signal recogniti 97.1 0.024 5.3E-07 55.5 15.6 26 109-134 99-124 (428)
238 TIGR00064 ftsY signal recognit 97.0 0.0027 5.8E-08 58.6 8.3 30 108-137 71-100 (272)
239 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0013 2.8E-08 63.0 6.4 102 102-208 126-233 (358)
240 COG5635 Predicted NTPase (NACH 97.0 0.012 2.6E-07 63.1 14.4 215 108-325 221-467 (824)
241 cd03214 ABC_Iron-Siderophores_ 97.0 0.0039 8.6E-08 53.8 8.8 121 108-230 24-163 (180)
242 PRK12724 flagellar biosynthesi 97.0 0.0037 8E-08 60.4 9.3 25 109-133 223-247 (432)
243 PRK05973 replicative DNA helic 97.0 0.0027 5.8E-08 56.9 7.7 40 105-144 60-99 (237)
244 TIGR00708 cobA cob(I)alamin ad 97.0 0.0037 8E-08 52.9 8.0 115 109-225 5-140 (173)
245 PRK07667 uridine kinase; Provi 97.0 0.0015 3.3E-08 57.1 5.9 29 108-136 16-44 (193)
246 COG1066 Sms Predicted ATP-depe 97.0 0.0041 8.8E-08 59.0 9.0 90 99-197 79-178 (456)
247 PRK06067 flagellar accessory p 97.0 0.0027 5.9E-08 57.3 7.8 37 108-144 24-60 (234)
248 cd03228 ABCC_MRP_Like The MRP 97.0 0.0061 1.3E-07 52.1 9.6 125 108-239 27-167 (171)
249 PRK12723 flagellar biosynthesi 97.0 0.0092 2E-07 57.6 11.7 27 108-134 173-199 (388)
250 PRK05541 adenylylsulfate kinas 97.0 0.0011 2.4E-08 56.9 4.9 36 108-143 6-41 (176)
251 PRK05703 flhF flagellar biosyn 97.0 0.0074 1.6E-07 59.3 11.1 26 109-134 221-246 (424)
252 cd03238 ABC_UvrA The excision 97.0 0.0041 8.9E-08 53.3 8.3 24 108-131 20-43 (176)
253 PF13238 AAA_18: AAA domain; P 97.0 0.00065 1.4E-08 54.8 3.2 22 112-133 1-22 (129)
254 CHL00206 ycf2 Ycf2; Provisiona 97.0 0.0052 1.1E-07 68.8 10.8 27 108-134 1629-1655(2281)
255 PRK11388 DNA-binding transcrip 97.0 0.033 7.2E-07 58.2 16.6 45 89-133 324-372 (638)
256 PRK15455 PrkA family serine pr 96.9 0.001 2.2E-08 66.3 4.8 47 90-136 76-130 (644)
257 PRK05917 DNA polymerase III su 96.9 0.019 4.1E-07 53.0 12.8 123 100-242 7-154 (290)
258 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0063 1.4E-07 51.8 9.0 127 108-239 26-160 (166)
259 PF01583 APS_kinase: Adenylyls 96.9 0.0014 3E-08 54.6 4.8 36 109-144 2-37 (156)
260 PF03969 AFG1_ATPase: AFG1-lik 96.9 0.0025 5.3E-08 61.1 7.1 101 108-223 61-166 (362)
261 PRK12727 flagellar biosynthesi 96.9 0.005 1.1E-07 61.1 9.3 43 94-136 327-377 (559)
262 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0056 1.2E-07 50.7 8.4 105 108-230 25-132 (144)
263 PRK11823 DNA repair protein Ra 96.9 0.0054 1.2E-07 60.8 9.5 90 100-197 67-166 (446)
264 TIGR02533 type_II_gspE general 96.9 0.0018 3.9E-08 64.7 6.2 99 99-207 231-331 (486)
265 PF00485 PRK: Phosphoribulokin 96.9 0.0009 2E-08 58.6 3.7 26 111-136 1-26 (194)
266 PRK10923 glnG nitrogen regulat 96.9 0.011 2.4E-07 59.3 12.0 45 89-133 137-185 (469)
267 COG4088 Predicted nucleotide k 96.9 0.0027 5.8E-08 54.5 6.2 29 110-138 2-30 (261)
268 COG3854 SpoIIIAA ncharacterize 96.9 0.006 1.3E-07 53.3 8.4 111 108-224 136-252 (308)
269 TIGR00416 sms DNA repair prote 96.9 0.0058 1.3E-07 60.6 9.7 91 99-197 80-180 (454)
270 PF00910 RNA_helicase: RNA hel 96.9 0.00065 1.4E-08 53.1 2.4 26 112-137 1-26 (107)
271 PRK07261 topology modulation p 96.9 0.00091 2E-08 57.2 3.5 23 111-133 2-24 (171)
272 PF13671 AAA_33: AAA domain; P 96.9 0.00093 2E-08 55.2 3.3 24 111-134 1-24 (143)
273 PF00437 T2SE: Type II/IV secr 96.9 0.0011 2.3E-08 61.5 4.0 121 90-224 104-231 (270)
274 cd03216 ABC_Carb_Monos_I This 96.8 0.0021 4.6E-08 54.5 5.5 115 108-230 25-147 (163)
275 KOG0726 26S proteasome regulat 96.8 0.0018 4E-08 58.3 5.1 47 90-136 185-246 (440)
276 COG0465 HflB ATP-dependent Zn 96.8 0.011 2.4E-07 59.6 11.1 171 87-281 147-356 (596)
277 PF08433 KTI12: Chromatin asso 96.8 0.0025 5.4E-08 58.5 6.1 34 110-143 2-35 (270)
278 PRK10436 hypothetical protein; 96.8 0.0033 7.1E-08 62.2 7.3 100 98-207 206-307 (462)
279 cd01130 VirB11-like_ATPase Typ 96.8 0.0023 4.9E-08 55.6 5.5 98 102-204 18-117 (186)
280 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0071 1.5E-07 51.9 8.4 116 108-240 24-146 (177)
281 TIGR02782 TrbB_P P-type conjug 96.8 0.0053 1.2E-07 57.4 8.1 96 101-205 124-222 (299)
282 cd01394 radB RadB. The archaea 96.8 0.0029 6.2E-08 56.5 6.1 44 101-144 7-54 (218)
283 cd02019 NK Nucleoside/nucleoti 96.8 0.0013 2.8E-08 46.9 3.1 23 111-133 1-23 (69)
284 PRK06762 hypothetical protein; 96.8 0.0012 2.7E-08 56.1 3.5 25 109-133 2-26 (166)
285 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0014 3E-08 58.2 3.9 23 109-131 29-51 (213)
286 PRK10867 signal recognition pa 96.8 0.059 1.3E-06 52.9 15.4 28 109-136 100-127 (433)
287 COG2804 PulE Type II secretory 96.7 0.0049 1.1E-07 60.3 7.7 113 97-222 245-358 (500)
288 TIGR02329 propionate_PrpR prop 96.7 0.011 2.4E-07 59.7 10.5 45 89-133 211-259 (526)
289 TIGR02525 plasmid_TraJ plasmid 96.7 0.0066 1.4E-07 58.3 8.4 95 108-208 148-246 (372)
290 PTZ00301 uridine kinase; Provi 96.7 0.0014 3.1E-08 57.8 3.6 28 109-136 3-30 (210)
291 cd01125 repA Hexameric Replica 96.7 0.022 4.9E-07 51.5 11.5 24 111-134 3-26 (239)
292 cd03246 ABCC_Protease_Secretio 96.7 0.0081 1.8E-07 51.4 8.2 125 108-239 27-168 (173)
293 PTZ00494 tuzin-like protein; P 96.7 0.52 1.1E-05 45.9 20.5 157 87-255 368-544 (664)
294 COG1643 HrpA HrpA-like helicas 96.7 0.0066 1.4E-07 63.9 8.8 125 96-225 52-205 (845)
295 TIGR02237 recomb_radB DNA repa 96.7 0.0024 5.3E-08 56.5 5.0 37 108-144 11-47 (209)
296 COG2805 PilT Tfp pilus assembl 96.7 0.015 3.3E-07 53.0 9.9 93 108-208 124-219 (353)
297 PRK08233 hypothetical protein; 96.7 0.0015 3.2E-08 56.5 3.3 26 109-134 3-28 (182)
298 cd01122 GP4d_helicase GP4d_hel 96.7 0.02 4.3E-07 52.9 11.1 37 108-144 29-66 (271)
299 PRK05986 cob(I)alamin adenolsy 96.7 0.0074 1.6E-07 51.9 7.5 115 108-225 21-158 (191)
300 TIGR00764 lon_rel lon-related 96.7 0.004 8.6E-08 64.1 6.9 60 87-146 15-75 (608)
301 PRK13765 ATP-dependent proteas 96.7 0.0031 6.8E-08 64.7 6.1 59 87-145 28-87 (637)
302 PF07726 AAA_3: ATPase family 96.7 0.0014 3.1E-08 52.1 2.8 29 112-140 2-30 (131)
303 PRK07276 DNA polymerase III su 96.7 0.086 1.9E-06 48.8 14.9 91 186-286 103-197 (290)
304 PRK09361 radB DNA repair and r 96.6 0.0037 8.1E-08 56.0 5.9 37 108-144 22-58 (225)
305 PRK10416 signal recognition pa 96.6 0.016 3.4E-07 54.7 10.2 29 108-136 113-141 (318)
306 cd03115 SRP The signal recogni 96.6 0.02 4.3E-07 49.0 10.1 26 111-136 2-27 (173)
307 KOG0742 AAA+-type ATPase [Post 96.6 0.015 3.3E-07 55.0 9.7 29 108-136 383-411 (630)
308 KOG0740 AAA+-type ATPase [Post 96.6 0.08 1.7E-06 51.3 14.8 27 108-134 185-211 (428)
309 PRK15115 response regulator Gl 96.6 0.12 2.6E-06 51.5 16.9 44 90-133 134-181 (444)
310 COG4608 AppF ABC-type oligopep 96.6 0.0093 2E-07 53.8 7.9 122 108-231 38-176 (268)
311 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0039 8.4E-08 50.5 5.0 33 102-134 15-47 (133)
312 PRK05480 uridine/cytidine kina 96.6 0.0018 4E-08 57.3 3.5 26 108-133 5-30 (209)
313 cd00544 CobU Adenosylcobinamid 96.6 0.015 3.2E-07 49.5 8.8 31 111-144 1-31 (169)
314 KOG1051 Chaperone HSP104 and r 96.6 0.02 4.2E-07 60.4 11.3 97 90-199 562-672 (898)
315 cd03229 ABC_Class3 This class 96.6 0.0069 1.5E-07 52.2 6.9 26 108-133 25-50 (178)
316 PRK00131 aroK shikimate kinase 96.6 0.0022 4.7E-08 54.9 3.8 26 108-133 3-28 (175)
317 COG0714 MoxR-like ATPases [Gen 96.6 0.0035 7.7E-08 59.7 5.6 52 90-141 24-75 (329)
318 PRK09270 nucleoside triphospha 96.6 0.003 6.4E-08 56.9 4.7 30 108-137 32-61 (229)
319 PRK06547 hypothetical protein; 96.6 0.0031 6.8E-08 53.8 4.6 26 108-133 14-39 (172)
320 TIGR02538 type_IV_pilB type IV 96.6 0.0053 1.2E-07 62.8 7.0 100 98-207 304-405 (564)
321 cd02027 APSK Adenosine 5'-phos 96.6 0.0069 1.5E-07 50.5 6.5 25 111-135 1-25 (149)
322 PRK04040 adenylate kinase; Pro 96.6 0.0025 5.5E-08 55.3 4.0 26 109-134 2-27 (188)
323 PRK09280 F0F1 ATP synthase sub 96.6 0.011 2.3E-07 58.1 8.7 89 108-199 143-250 (463)
324 cd03237 ABC_RNaseL_inhibitor_d 96.5 0.013 2.8E-07 53.3 8.6 26 108-133 24-49 (246)
325 COG2401 ABC-type ATPase fused 96.5 0.0069 1.5E-07 57.5 6.8 144 92-235 373-578 (593)
326 PRK03839 putative kinase; Prov 96.5 0.0022 4.7E-08 55.4 3.4 24 111-134 2-25 (180)
327 cd03230 ABC_DR_subfamily_A Thi 96.5 0.0089 1.9E-07 51.2 7.2 26 108-133 25-50 (173)
328 PRK06731 flhF flagellar biosyn 96.5 0.026 5.7E-07 51.7 10.5 28 109-136 75-102 (270)
329 COG1102 Cmk Cytidylate kinase 96.5 0.0021 4.6E-08 52.9 3.0 24 111-134 2-25 (179)
330 cd00227 CPT Chloramphenicol (C 96.5 0.0028 6E-08 54.5 4.0 26 109-134 2-27 (175)
331 KOG3928 Mitochondrial ribosome 96.5 0.048 1E-06 51.8 12.2 55 233-290 402-460 (461)
332 TIGR00390 hslU ATP-dependent p 96.5 0.0029 6.4E-08 60.9 4.4 49 89-137 11-75 (441)
333 cd02028 UMPK_like Uridine mono 96.5 0.0033 7.2E-08 54.2 4.4 26 111-136 1-26 (179)
334 PRK13833 conjugal transfer pro 96.5 0.011 2.4E-07 55.7 8.1 96 101-205 136-233 (323)
335 cd03283 ABC_MutS-like MutS-lik 96.5 0.027 5.9E-07 49.3 10.2 25 109-133 25-49 (199)
336 PHA02244 ATPase-like protein 96.5 0.0092 2E-07 56.7 7.6 48 87-134 93-144 (383)
337 PRK05201 hslU ATP-dependent pr 96.5 0.0035 7.5E-08 60.5 4.8 49 89-137 14-78 (443)
338 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0026 5.6E-08 55.2 3.7 25 109-133 3-27 (188)
339 COG3910 Predicted ATPase [Gene 96.5 0.07 1.5E-06 45.4 11.7 34 99-132 26-60 (233)
340 cd03226 ABC_cobalt_CbiO_domain 96.5 0.02 4.4E-07 50.5 9.3 25 108-132 25-49 (205)
341 PF13245 AAA_19: Part of AAA d 96.5 0.0052 1.1E-07 44.6 4.5 26 108-133 9-34 (76)
342 TIGR02858 spore_III_AA stage I 96.5 0.01 2.2E-07 54.5 7.6 112 109-227 111-231 (270)
343 KOG0727 26S proteasome regulat 96.5 0.0053 1.2E-07 54.2 5.3 47 91-137 156-217 (408)
344 PF00406 ADK: Adenylate kinase 96.5 0.0038 8.2E-08 52.2 4.4 20 114-133 1-20 (151)
345 TIGR02788 VirB11 P-type DNA tr 96.5 0.0049 1.1E-07 58.1 5.6 93 108-204 143-235 (308)
346 cd01124 KaiC KaiC is a circadi 96.5 0.0035 7.7E-08 54.3 4.4 34 111-144 1-34 (187)
347 PRK00625 shikimate kinase; Pro 96.5 0.0025 5.5E-08 54.4 3.3 24 111-134 2-25 (173)
348 PRK12597 F0F1 ATP synthase sub 96.4 0.02 4.3E-07 56.5 9.8 89 108-199 142-249 (461)
349 COG0572 Udk Uridine kinase [Nu 96.4 0.0032 7E-08 55.0 3.9 28 109-136 8-35 (218)
350 TIGR01069 mutS2 MutS2 family p 96.4 0.0036 7.8E-08 66.1 5.0 25 108-132 321-345 (771)
351 PF00625 Guanylate_kin: Guanyl 96.4 0.0047 1E-07 53.4 5.0 35 109-143 2-36 (183)
352 COG1136 SalX ABC-type antimicr 96.4 0.014 2.9E-07 51.7 7.8 58 180-240 153-216 (226)
353 TIGR01967 DEAH_box_HrpA ATP-de 96.4 0.0064 1.4E-07 66.8 6.8 38 96-133 69-106 (1283)
354 KOG0736 Peroxisome assembly fa 96.4 0.11 2.3E-06 53.5 14.7 166 91-279 402-597 (953)
355 PF01078 Mg_chelatase: Magnesi 96.4 0.0046 9.9E-08 53.8 4.6 42 90-131 3-44 (206)
356 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.027 5.9E-07 50.7 9.6 49 180-230 150-204 (254)
357 PRK00889 adenylylsulfate kinas 96.4 0.0049 1.1E-07 52.9 4.9 28 109-136 4-31 (175)
358 PRK11131 ATP-dependent RNA hel 96.4 0.017 3.8E-07 63.4 10.0 37 97-133 77-113 (1294)
359 TIGR00235 udk uridine kinase. 96.4 0.0027 5.9E-08 56.1 3.3 26 109-134 6-31 (207)
360 PRK05818 DNA polymerase III su 96.4 0.38 8.3E-06 43.6 16.9 56 187-242 88-147 (261)
361 COG0396 sufC Cysteine desulfur 96.4 0.033 7.2E-07 48.9 9.7 24 108-131 29-52 (251)
362 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.0062 1.3E-07 55.8 5.7 37 108-144 35-71 (259)
363 KOG0924 mRNA splicing factor A 96.4 0.011 2.4E-07 59.3 7.6 31 101-131 363-393 (1042)
364 TIGR01039 atpD ATP synthase, F 96.4 0.026 5.6E-07 55.3 10.1 89 108-199 142-249 (461)
365 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.0025 5.4E-08 55.1 2.9 23 111-133 1-23 (183)
366 PF00006 ATP-synt_ab: ATP synt 96.4 0.0092 2E-07 52.8 6.4 29 108-136 14-42 (215)
367 PF06068 TIP49: TIP49 C-termin 96.4 0.0069 1.5E-07 57.1 5.8 53 87-139 21-80 (398)
368 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.007 1.5E-07 54.8 5.8 37 108-144 20-56 (237)
369 COG3640 CooC CO dehydrogenase 96.4 0.0052 1.1E-07 53.9 4.6 38 111-148 2-39 (255)
370 PRK14529 adenylate kinase; Pro 96.3 0.017 3.8E-07 51.3 8.1 24 111-134 2-25 (223)
371 PTZ00088 adenylate kinase 1; P 96.3 0.014 3E-07 52.3 7.6 24 110-133 7-30 (229)
372 PF03193 DUF258: Protein of un 96.3 0.0059 1.3E-07 51.1 4.8 35 97-132 24-58 (161)
373 PRK13543 cytochrome c biogenes 96.3 0.041 9E-07 48.8 10.6 25 108-132 36-60 (214)
374 PRK12678 transcription termina 96.3 0.0082 1.8E-07 59.9 6.3 41 108-148 415-456 (672)
375 PRK14528 adenylate kinase; Pro 96.3 0.017 3.8E-07 50.0 7.8 24 110-133 2-25 (186)
376 cd00267 ABC_ATPase ABC (ATP-bi 96.3 0.01 2.2E-07 49.9 6.1 123 108-239 24-153 (157)
377 PRK13894 conjugal transfer ATP 96.3 0.022 4.8E-07 53.7 9.0 94 102-204 141-236 (319)
378 COG1875 NYN ribonuclease and A 96.3 0.04 8.7E-07 51.6 10.3 39 92-130 226-266 (436)
379 TIGR03411 urea_trans_UrtD urea 96.3 0.055 1.2E-06 49.1 11.3 25 108-132 27-51 (242)
380 PF03266 NTPase_1: NTPase; In 96.3 0.0059 1.3E-07 51.9 4.6 24 112-135 2-25 (168)
381 PF13086 AAA_11: AAA domain; P 96.3 0.009 2E-07 53.6 6.1 36 98-133 6-41 (236)
382 PRK09544 znuC high-affinity zi 96.3 0.037 8E-07 50.5 10.1 26 108-133 29-54 (251)
383 PF03205 MobB: Molybdopterin g 96.3 0.0069 1.5E-07 49.8 4.8 34 110-143 1-35 (140)
384 COG0467 RAD55 RecA-superfamily 96.3 0.0078 1.7E-07 55.3 5.7 37 108-144 22-58 (260)
385 PRK05342 clpX ATP-dependent pr 96.3 0.0064 1.4E-07 59.4 5.3 47 89-135 70-134 (412)
386 KOG0066 eIF2-interacting prote 96.2 0.041 8.8E-07 52.7 10.2 25 108-132 612-636 (807)
387 PRK13947 shikimate kinase; Pro 96.2 0.0038 8.3E-08 53.3 3.3 24 111-134 3-26 (171)
388 cd02025 PanK Pantothenate kina 96.2 0.0055 1.2E-07 54.7 4.3 24 111-134 1-24 (220)
389 TIGR03740 galliderm_ABC gallid 96.2 0.032 6.9E-07 49.9 9.3 25 108-132 25-49 (223)
390 cd02020 CMPK Cytidine monophos 96.2 0.0038 8.2E-08 51.7 3.1 23 111-133 1-23 (147)
391 COG1419 FlhF Flagellar GTP-bin 96.2 0.031 6.6E-07 53.5 9.4 26 109-134 203-228 (407)
392 cd02021 GntK Gluconate kinase 96.2 0.0035 7.5E-08 52.3 2.8 23 111-133 1-23 (150)
393 cd02024 NRK1 Nicotinamide ribo 96.2 0.0036 7.7E-08 54.1 2.8 23 111-133 1-23 (187)
394 TIGR02868 CydC thiol reductant 96.2 0.02 4.3E-07 58.5 8.7 25 108-132 360-384 (529)
395 PRK03846 adenylylsulfate kinas 96.2 0.0073 1.6E-07 53.0 4.8 36 108-143 23-58 (198)
396 cd00071 GMPK Guanosine monopho 96.2 0.0039 8.4E-08 51.1 2.8 26 111-136 1-26 (137)
397 TIGR02322 phosphon_PhnN phosph 96.2 0.0047 1E-07 53.2 3.5 25 110-134 2-26 (179)
398 PRK15424 propionate catabolism 96.1 0.025 5.5E-07 57.1 8.9 44 89-132 218-265 (538)
399 cd03217 ABC_FeS_Assembly ABC-t 96.1 0.0085 1.8E-07 52.7 5.0 25 108-132 25-49 (200)
400 cd01135 V_A-ATPase_B V/A-type 96.1 0.047 1E-06 49.9 9.7 90 108-200 68-179 (276)
401 cd02023 UMPK Uridine monophosp 96.1 0.0041 8.8E-08 54.6 2.8 23 111-133 1-23 (198)
402 COG1936 Predicted nucleotide k 96.1 0.0048 1E-07 51.5 3.0 20 111-130 2-21 (180)
403 COG1428 Deoxynucleoside kinase 96.1 0.005 1.1E-07 53.3 3.2 26 109-134 4-29 (216)
404 TIGR03305 alt_F1F0_F1_bet alte 96.1 0.031 6.7E-07 54.8 9.0 89 108-199 137-244 (449)
405 PF06745 KaiC: KaiC; InterPro 96.1 0.018 3.8E-07 51.7 7.0 37 108-144 18-55 (226)
406 KOG0730 AAA+-type ATPase [Post 96.1 0.071 1.5E-06 53.7 11.5 168 90-280 184-386 (693)
407 PRK14530 adenylate kinase; Pro 96.1 0.0059 1.3E-07 54.4 3.8 25 109-133 3-27 (215)
408 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.013 2.7E-07 52.8 6.0 37 108-144 19-55 (229)
409 KOG0922 DEAH-box RNA helicase 96.1 0.014 3E-07 58.5 6.6 124 97-225 54-205 (674)
410 PRK06217 hypothetical protein; 96.1 0.0048 1E-07 53.4 3.1 24 111-134 3-26 (183)
411 PRK13949 shikimate kinase; Pro 96.1 0.0059 1.3E-07 52.1 3.5 25 110-134 2-26 (169)
412 cd01393 recA_like RecA is a b 96.1 0.012 2.7E-07 52.7 5.8 30 108-137 18-47 (226)
413 TIGR02768 TraA_Ti Ti-type conj 96.0 0.042 9.1E-07 58.1 10.4 32 105-136 364-395 (744)
414 cd03300 ABC_PotA_N PotA is an 96.0 0.067 1.5E-06 48.2 10.5 26 108-133 25-50 (232)
415 COG2884 FtsE Predicted ATPase 96.0 0.032 7E-07 47.5 7.6 52 180-232 148-204 (223)
416 cd03287 ABC_MSH3_euk MutS3 hom 96.0 0.0059 1.3E-07 54.4 3.5 24 108-131 30-53 (222)
417 PRK10463 hydrogenase nickel in 96.0 0.014 3E-07 53.8 5.9 35 108-142 103-137 (290)
418 CHL00060 atpB ATP synthase CF1 96.0 0.036 7.8E-07 54.8 9.1 55 108-165 160-214 (494)
419 PRK12339 2-phosphoglycerate ki 96.0 0.006 1.3E-07 53.3 3.4 25 109-133 3-27 (197)
420 COG2274 SunT ABC-type bacterio 96.0 0.032 6.9E-07 58.3 9.2 24 108-131 498-521 (709)
421 COG0529 CysC Adenylylsulfate k 96.0 0.011 2.5E-07 49.5 4.7 35 108-142 22-56 (197)
422 PF06309 Torsin: Torsin; Inte 96.0 0.011 2.3E-07 47.1 4.3 26 108-133 52-77 (127)
423 PRK13948 shikimate kinase; Pro 96.0 0.0072 1.6E-07 52.1 3.7 27 108-134 9-35 (182)
424 TIGR03574 selen_PSTK L-seryl-t 96.0 0.0076 1.7E-07 55.0 4.1 26 111-136 1-26 (249)
425 PRK13764 ATPase; Provisional 96.0 0.033 7.1E-07 56.8 8.9 86 108-205 256-342 (602)
426 TIGR01313 therm_gnt_kin carboh 96.0 0.0047 1E-07 52.3 2.5 22 112-133 1-22 (163)
427 COG0563 Adk Adenylate kinase a 96.0 0.0059 1.3E-07 52.4 3.1 23 111-133 2-24 (178)
428 cd00464 SK Shikimate kinase (S 96.0 0.0063 1.4E-07 50.8 3.3 22 112-133 2-23 (154)
429 PHA02774 E1; Provisional 96.0 0.025 5.5E-07 56.6 7.8 38 97-134 419-459 (613)
430 PRK14527 adenylate kinase; Pro 96.0 0.0072 1.6E-07 52.7 3.7 26 108-133 5-30 (191)
431 PRK00300 gmk guanylate kinase; 96.0 0.0067 1.5E-07 53.5 3.5 26 108-133 4-29 (205)
432 PF02367 UPF0079: Uncharacteri 96.0 0.011 2.3E-07 47.2 4.3 33 101-133 7-39 (123)
433 TIGR03263 guanyl_kin guanylate 95.9 0.006 1.3E-07 52.5 3.1 24 110-133 2-25 (180)
434 COG1224 TIP49 DNA helicase TIP 95.9 0.014 3.1E-07 54.3 5.6 52 87-138 36-94 (450)
435 TIGR03522 GldA_ABC_ATP gliding 95.9 0.087 1.9E-06 49.5 11.1 25 108-132 27-51 (301)
436 PRK13946 shikimate kinase; Pro 95.9 0.0076 1.7E-07 52.2 3.7 27 108-134 9-35 (184)
437 PRK04328 hypothetical protein; 95.9 0.014 3.1E-07 53.1 5.6 37 108-144 22-58 (249)
438 PRK13657 cyclic beta-1,2-gluca 95.9 0.037 7.9E-07 57.3 9.3 25 108-132 360-384 (588)
439 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.012 2.6E-07 53.1 5.1 26 108-133 18-43 (235)
440 KOG1532 GTPase XAB1, interacts 95.9 0.0092 2E-07 53.4 4.1 31 108-138 18-48 (366)
441 COG0194 Gmk Guanylate kinase [ 95.9 0.011 2.4E-07 50.2 4.4 25 109-133 4-28 (191)
442 PRK10751 molybdopterin-guanine 95.9 0.013 2.9E-07 49.7 4.9 29 108-136 5-33 (173)
443 PRK13407 bchI magnesium chelat 95.9 0.0096 2.1E-07 56.4 4.5 47 87-133 5-53 (334)
444 PRK14737 gmk guanylate kinase; 95.9 0.0069 1.5E-07 52.5 3.2 26 108-133 3-28 (186)
445 TIGR02012 tigrfam_recA protein 95.9 0.011 2.4E-07 55.5 4.8 37 108-144 54-90 (321)
446 cd03282 ABC_MSH4_euk MutS4 hom 95.9 0.013 2.8E-07 51.6 5.0 24 108-131 28-51 (204)
447 PF08298 AAA_PrkA: PrkA AAA do 95.9 0.012 2.6E-07 55.3 5.0 48 89-136 60-115 (358)
448 smart00534 MUTSac ATPase domai 95.9 0.0032 7E-08 54.6 1.1 21 111-131 1-21 (185)
449 cd03243 ABC_MutS_homologs The 95.9 0.0047 1E-07 54.4 2.2 24 108-131 28-51 (202)
450 cd00046 DEXDc DEAD-like helica 95.9 0.022 4.7E-07 46.1 6.1 34 111-144 2-37 (144)
451 PRK15453 phosphoribulokinase; 95.9 0.013 2.8E-07 53.5 5.0 28 108-135 4-31 (290)
452 PRK13900 type IV secretion sys 95.9 0.021 4.5E-07 54.3 6.5 94 108-205 159-253 (332)
453 TIGR00382 clpX endopeptidase C 95.9 0.013 2.9E-07 56.9 5.4 47 88-134 75-141 (413)
454 KOG3347 Predicted nucleotide k 95.8 0.0069 1.5E-07 49.2 2.7 25 109-133 7-31 (176)
455 PRK11174 cysteine/glutathione 95.8 0.03 6.4E-07 58.0 8.3 26 108-133 375-400 (588)
456 COG0488 Uup ATPase components 95.8 0.05 1.1E-06 54.8 9.5 131 108-241 347-511 (530)
457 PF03308 ArgK: ArgK protein; 95.8 0.019 4.1E-07 51.6 5.7 29 108-136 28-56 (266)
458 PLN02674 adenylate kinase 95.8 0.034 7.4E-07 50.1 7.5 25 109-133 31-55 (244)
459 TIGR02655 circ_KaiC circadian 95.8 0.016 3.5E-07 58.2 6.0 46 99-144 249-298 (484)
460 TIGR03375 type_I_sec_LssB type 95.8 0.084 1.8E-06 55.9 11.7 25 108-132 490-514 (694)
461 KOG0732 AAA+-type ATPase conta 95.8 0.23 5E-06 53.3 14.4 54 90-143 265-333 (1080)
462 KOG0927 Predicted transporter 95.8 0.037 8E-07 54.4 8.1 51 180-231 232-285 (614)
463 PRK05057 aroK shikimate kinase 95.8 0.0092 2E-07 51.0 3.6 25 109-133 4-28 (172)
464 PRK10875 recD exonuclease V su 95.8 0.083 1.8E-06 54.4 11.0 28 108-135 166-193 (615)
465 KOG0920 ATP-dependent RNA heli 95.8 0.051 1.1E-06 57.5 9.6 151 99-254 178-361 (924)
466 PRK14531 adenylate kinase; Pro 95.8 0.0093 2E-07 51.6 3.6 24 110-133 3-26 (183)
467 TIGR01287 nifH nitrogenase iro 95.8 0.013 2.9E-07 54.3 4.9 37 110-147 1-37 (275)
468 PLN02200 adenylate kinase fami 95.8 0.0088 1.9E-07 53.9 3.5 25 109-133 43-67 (234)
469 PRK05439 pantothenate kinase; 95.8 0.015 3.1E-07 54.4 5.0 28 108-135 85-112 (311)
470 TIGR01448 recD_rel helicase, p 95.8 0.062 1.3E-06 56.7 10.2 29 108-136 337-365 (720)
471 PRK06761 hypothetical protein; 95.8 0.014 3E-07 53.8 4.8 28 109-136 3-30 (282)
472 PRK08533 flagellar accessory p 95.8 0.016 3.5E-07 52.1 5.2 37 108-144 23-59 (230)
473 TIGR01818 ntrC nitrogen regula 95.8 0.25 5.3E-06 49.6 14.3 44 90-133 134-181 (463)
474 COG0541 Ffh Signal recognition 95.8 0.25 5.4E-06 47.7 13.1 29 108-136 99-127 (451)
475 COG0488 Uup ATPase components 95.8 0.042 9.1E-07 55.4 8.5 50 180-231 164-216 (530)
476 TIGR00554 panK_bact pantothena 95.7 0.014 3E-07 54.1 4.8 27 108-134 61-87 (290)
477 PF13521 AAA_28: AAA domain; P 95.7 0.008 1.7E-07 50.9 3.0 21 112-132 2-22 (163)
478 TIGR01447 recD exodeoxyribonuc 95.7 0.08 1.7E-06 54.3 10.7 28 108-135 159-186 (586)
479 TIGR00176 mobB molybdopterin-g 95.7 0.014 3E-07 48.9 4.3 26 111-136 1-26 (155)
480 PF08477 Miro: Miro-like prote 95.7 0.0092 2E-07 47.3 3.1 21 112-132 2-22 (119)
481 cd00983 recA RecA is a bacter 95.7 0.014 3E-07 54.8 4.7 37 108-144 54-90 (325)
482 COG0378 HypB Ni2+-binding GTPa 95.7 0.016 3.4E-07 49.5 4.5 37 110-146 14-50 (202)
483 PF02456 Adeno_IVa2: Adenoviru 95.7 0.23 5.1E-06 45.6 12.1 35 109-143 87-122 (369)
484 PRK13975 thymidylate kinase; P 95.7 0.01 2.2E-07 51.9 3.5 26 110-135 3-28 (196)
485 PRK13808 adenylate kinase; Pro 95.7 0.035 7.6E-07 52.3 7.3 23 111-133 2-24 (333)
486 PF05970 PIF1: PIF1-like helic 95.7 0.026 5.7E-07 54.5 6.6 34 108-141 21-54 (364)
487 COG1124 DppF ABC-type dipeptid 95.7 0.013 2.7E-07 51.9 4.0 24 108-131 32-55 (252)
488 TIGR02915 PEP_resp_reg putativ 95.7 0.19 4.1E-06 50.1 13.0 44 90-133 139-186 (445)
489 TIGR03796 NHPM_micro_ABC1 NHPM 95.7 0.075 1.6E-06 56.4 10.6 25 108-132 504-528 (710)
490 PF03029 ATP_bind_1: Conserved 95.7 0.012 2.6E-07 53.2 3.9 33 114-147 1-33 (238)
491 KOG2170 ATPase of the AAA+ sup 95.7 0.047 1E-06 49.8 7.6 27 108-134 109-135 (344)
492 COG0703 AroK Shikimate kinase 95.7 0.011 2.5E-07 49.7 3.5 28 110-137 3-30 (172)
493 cd00820 PEPCK_HprK Phosphoenol 95.6 0.011 2.3E-07 45.9 3.0 23 108-130 14-36 (107)
494 PRK14493 putative bifunctional 95.6 0.016 3.5E-07 53.3 4.7 34 110-144 2-35 (274)
495 PRK06851 hypothetical protein; 95.6 0.092 2E-06 50.3 9.9 50 93-144 200-250 (367)
496 PF02374 ArsA_ATPase: Anion-tr 95.6 0.017 3.7E-07 54.2 4.9 34 110-143 2-35 (305)
497 KOG0058 Peptide exporter, ABC 95.6 0.057 1.2E-06 55.1 8.8 24 108-131 493-516 (716)
498 PRK10078 ribose 1,5-bisphospho 95.6 0.011 2.3E-07 51.4 3.3 24 110-133 3-26 (186)
499 PRK14532 adenylate kinase; Pro 95.6 0.0097 2.1E-07 51.7 3.0 22 112-133 3-24 (188)
500 PRK13768 GTPase; Provisional 95.6 0.017 3.7E-07 52.7 4.7 27 110-136 3-29 (253)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.1e-68 Score=574.22 Aligned_cols=426 Identities=38% Similarity=0.631 Sum_probs=376.3
Q ss_pred CCCCcEEEeEeeecccccccccccchHHHHHHhhhh-CHHHHHHHHHHHHHHHhhcCCccCCCCchHHHHHHHhhhhhcc
Q 048064 1 KVYAQIVIPVFYRVDPSHVRKQIGSFGVSFSKLKEK-FPEKMQRWRSALTEAANLSGFDSFVIRNESELIKKVVNDILEK 79 (429)
Q Consensus 1 ~~~~~~v~pvfy~v~p~~vr~~~~~~~~~~~~~~~~-~~~~~~~w~~al~~~~~~~~~~~~~~~~e~~~i~~i~~~~~~~ 79 (429)
+..|++|+||||+|||+|||+|+|+||++|.++..+ ..+++++|++||+++|++.|++...+.+|++.|++|+++|..+
T Consensus 95 ~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~ 174 (1153)
T PLN03210 95 EELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGK 174 (1153)
T ss_pred hhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999998765 4567999999999999999999667789999999999999999
Q ss_pred CCccccCCCCCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec--hhhh---
Q 048064 80 LPKVVPCDSKNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI--REES--- 150 (429)
Q Consensus 80 ~~~~~p~~~~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~--- 150 (429)
+...++ .....+|||+.+++++..++. +.++|+|+||||+||||||+.+|+++..+|+..+|+... ....
T Consensus 175 l~~~~~-~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 175 LNLTPS-NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred hccccC-cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhc
Confidence 987666 777899999999999999986 788999999999999999999999999999988887532 1100
Q ss_pred h-----hcCCHHHHHHHHHHHHhcC-CCCCCCHHHHHHHhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCC
Q 048064 151 Q-----KAGGLAFLQQKLLSEVLKD-VNVIPHIDLNFRRLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRN 224 (429)
Q Consensus 151 ~-----~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~ 224 (429)
. .......++.+++..+... .........+.+.+.++++||||||+|+..+++.+.....++++|++||||||+
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 0 0011234555666665544 223334566888999999999999999999999998877778899999999999
Q ss_pred hhhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHHHHHHHHH
Q 048064 225 KQVLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEVWENAIKK 304 (429)
Q Consensus 225 ~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~~~~l~~ 304 (429)
..++...+...+|+++.|+.++|++||++++|+...++..+.+++.+++++|+|+||||+++|++|+.++..+|+..++.
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~ 413 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPR 413 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99988777778999999999999999999999887777778899999999999999999999999999999999999999
Q ss_pred HhhCCCccHHHHHHHhhhcCCh-hhHHHHhhhhcccCCcCHHHHHHHHHHcCCChhhhHHHHHHcCceeEccCCeEEccH
Q 048064 305 LKNFLHQNILDVLKISYDDLDN-DEKNIFLDVACFFKGEDIYLVKKFFEASGFYPEIGISILVDKALIAINSYNKITMHD 383 (429)
Q Consensus 305 l~~~~~~~i~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~~~~~~mH~ 383 (429)
+....+..+..+|+.||+.|++ .+|.+|+++|||+.+.+.+.+..++..++.....+++.|++++||+.. .+++.||+
T Consensus 414 L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHd 492 (1153)
T PLN03210 414 LRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHS 492 (1153)
T ss_pred HHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhh
Confidence 9988888999999999999986 599999999999999999999999988888888899999999999987 67899999
Q ss_pred HHHHHHHHHHhhhcCCCCCcccCCCcchHHHHHhcCCCccchhcc
Q 048064 384 LLQELGREIVRQESTNPGNRTRLWHHEDIYEVLAYNRLFSLLQDL 428 (429)
Q Consensus 384 lv~~~a~~~~~~~~~~~~~~~rl~~~~~i~~~l~~~~~~~~~~~~ 428 (429)
++|++|++++++++..+++|+|+|++.+|.++|.+++|++.+++|
T Consensus 493 Ll~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i 537 (1153)
T PLN03210 493 LLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGI 537 (1153)
T ss_pred HHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEE
Confidence 999999999999887899999999999999999999999999876
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-42 Score=354.42 Aligned_cols=300 Identities=27% Similarity=0.389 Sum_probs=258.4
Q ss_pred cchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHH---hhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHH
Q 048064 93 VGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNR---ISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEV 167 (429)
Q Consensus 93 vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (429)
||.+..++.+.+.|. +..+++|+||||+||||||++++++ +..+|+..+|+.. +. ......++++++..+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk-~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SK-EFTTRKIQQTILERL 235 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----cc-cccHHhHHHHHHHHh
Confidence 999999999999997 6689999999999999999999995 5678999999983 33 678899999999988
Q ss_pred hcCCCCCCC------HHHHHHHhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhhhh-cCCCeEEEcC
Q 048064 168 LKDVNVIPH------IDLNFRRLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVLRN-CHINQIYEMK 240 (429)
Q Consensus 168 ~~~~~~~~~------~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~-~~~~~~~~l~ 240 (429)
+........ ...+.+.|.++|++|||||||+...|+.+...++....|++|++|||+..++.. ++....++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 775222211 122888999999999999999999999999999887789999999999999988 7778889999
Q ss_pred CCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCChHHHHHHHHhhcC-CCHHHHHHHHHHHhhC-------CCc
Q 048064 241 GLGDDHALELFIRHAFRQN-LVDVDYKELSDKVINYAQGVPLALKILGCYLFE-RKKEVWENAIKKLKNF-------LHQ 311 (429)
Q Consensus 241 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~-~~~~~~~~~l~~l~~~-------~~~ 311 (429)
.|+++|||.||++.++... ...+...+++++++++|+|+|||+.++|+.|+. .+..+|+.+.+.+... ...
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 9999999999999997763 333447899999999999999999999999988 4567999999988664 135
Q ss_pred cHHHHHHHhhhcCChhhHHHHhhhhcccCC--cCHHHHHHHHHHcCCCh------------hhhHHHHHHcCceeEccC-
Q 048064 312 NILDVLKISYDDLDNDEKNIFLDVACFFKG--EDIYLVKKFFEASGFYP------------EIGISILVDKALIAINSY- 376 (429)
Q Consensus 312 ~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~~------------~~~l~~L~~~sLi~~~~~- 376 (429)
.+..++..||+.|+++.|.||+|||+||++ ++.+.+..+|.++|+.. ..++.+|++++|+.....
T Consensus 396 ~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 396 SILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 788999999999999999999999999998 57799999999999643 336999999999997642
Q ss_pred ---CeEEccHHHHHHHHHHHhhhc
Q 048064 377 ---NKITMHDLLQELGREIVRQES 397 (429)
Q Consensus 377 ---~~~~mH~lv~~~a~~~~~~~~ 397 (429)
..+.|||+||++|..++++.+
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhcccc
Confidence 469999999999999999443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-37 Score=291.88 Aligned_cols=259 Identities=29% Similarity=0.478 Sum_probs=199.5
Q ss_pred hhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHH--hhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHh
Q 048064 95 VESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNR--ISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVL 168 (429)
Q Consensus 95 R~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (429)
|+.++++|.+.|. +.++|+|+|+||+||||||.+++++ +..+|+.++|+..... .....+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----ccccccccccccccc
Confidence 7889999999887 5889999999999999999999998 8889987777764332 333777778888887
Q ss_pred cCCCC---CCCH----HHHHHHhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhcCC-CeEEEcC
Q 048064 169 KDVNV---IPHI----DLNFRRLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVLRNCHI-NQIYEMK 240 (429)
Q Consensus 169 ~~~~~---~~~~----~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~-~~~~~l~ 240 (429)
..... .... +.+.+.+.++++||||||+|+...++.+...++....+++||||||+..+...... ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 76322 2222 33888899999999999999999998887777766779999999999988766544 6789999
Q ss_pred CCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCChHHHHHHHHhhcC-CCHHHHHHHHHHHhhCC------Ccc
Q 048064 241 GLGDDHALELFIRHAFRQN-LVDVDYKELSDKVINYAQGVPLALKILGCYLFE-RKKEVWENAIKKLKNFL------HQN 312 (429)
Q Consensus 241 ~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~-~~~~~~~~~l~~l~~~~------~~~ 312 (429)
+|+.+|+++||.+.++... .......+.+++|++.|+|+||||+++|++++. .+..+|...++.+.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999986654 223344567899999999999999999999954 25578999988876543 367
Q ss_pred HHHHHHHhhhcCChhhHHHHhhhhcccCC--cCHHHHHHHHHHcCCCh
Q 048064 313 ILDVLKISYDDLDNDEKNIFLDVACFFKG--EDIYLVKKFFEASGFYP 358 (429)
Q Consensus 313 i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~~ 358 (429)
+..++..||+.|+++.|.||++||+||.+ ++.+.+..+|.++|+..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999987 56899999998876543
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.80 E-value=2.8e-17 Score=177.76 Aligned_cols=292 Identities=15% Similarity=0.173 Sum_probs=190.7
Q ss_pred CCCCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
..+..+|-|...++.|... ...+++.|+||+|.||||++.+++.+. +.++|+. +... ..+...+...++..
T Consensus 11 ~~~~~~~~R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~---d~~~~~f~~~l~~~ 81 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDES---DNQPERFASYLIAA 81 (903)
T ss_pred CCccccCcchHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCcc---cCCHHHHHHHHHHH
Confidence 5667899999888877643 378899999999999999999988643 3466664 4332 23445555555555
Q ss_pred HhcCCCC-------------CCCHH----HHHHHhc--CCcEEEEecCCCCHH--HHH-HHhccCCCCCCCCEEEEEeCC
Q 048064 167 VLKDVNV-------------IPHID----LNFRRLS--CRKVLIVLDDVTCLN--QIE-SLVGSLDRLLPESRILITTRN 224 (429)
Q Consensus 167 ~~~~~~~-------------~~~~~----~l~~~l~--~~~~LlVlDdv~~~~--~~~-~l~~~l~~~~~~~~iiiTtR~ 224 (429)
+...... ..... .+...+. +.+++|||||++..+ ... .+...+....++.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 5322100 01111 1333333 578999999997542 222 333333344567889899998
Q ss_pred hhhhh--hc-CCCeEEEcC----CCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHH
Q 048064 225 KQVLR--NC-HINQIYEMK----GLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEV 297 (429)
Q Consensus 225 ~~~~~--~~-~~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~ 297 (429)
..... .+ .......+. +|+.+|+.+||....... . ..+.+.++++.|+|+|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--I---EAAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC--C---CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 42211 11 112234455 999999999998765322 1 23557889999999999999988776543210
Q ss_pred HHHHHHHHhhCCCccHHHHHHH-hhhcCChhhHHHHhhhhcccCCcCHHHHHHHHHHcCCChhhhHHHHHHcCceeE--c
Q 048064 298 WENAIKKLKNFLHQNILDVLKI-SYDDLDNDEKNIFLDVACFFKGEDIYLVKKFFEASGFYPEIGISILVDKALIAI--N 374 (429)
Q Consensus 298 ~~~~l~~l~~~~~~~i~~~l~~-s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~--~ 374 (429)
.......+.......+...+.. .++.||++.+.++..+|+++ .++.+.+..+.+. ......++.|.+.+|+.. +
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~~~~~~ 312 (903)
T PRK04841 236 LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLFIQRMD 312 (903)
T ss_pred hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCeeEeec
Confidence 1111122211123456665544 48999999999999999986 7787777666642 245778999999999764 2
Q ss_pred c-CCeEEccHHHHHHHHHHHhhh
Q 048064 375 S-YNKITMHDLLQELGREIVRQE 396 (429)
Q Consensus 375 ~-~~~~~mH~lv~~~a~~~~~~~ 396 (429)
+ ..+|++|++++++.++.+..+
T Consensus 313 ~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 313 DSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCCCEEehhHHHHHHHHHHHHhc
Confidence 2 347999999999999988555
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.72 E-value=1.2e-15 Score=152.63 Aligned_cols=293 Identities=14% Similarity=0.136 Sum_probs=192.3
Q ss_pred CCCCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
.++.+.|-|...++.|.+.. +.|.+.|+.|+|.|||||+.+++. ....-..+.|+..-. ...+...+...++..
T Consensus 16 ~~~~~~v~R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde----~dndp~rF~~yLi~a 89 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDE----SDNDPARFLSYLIAA 89 (894)
T ss_pred CCcccccccHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCC----ccCCHHHHHHHHHHH
Confidence 55678888887776666533 789999999999999999999998 444456777876322 256677788888777
Q ss_pred HhcCCCCCC-------------CHHH----HHHHhc--CCcEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCC
Q 048064 167 VLKDVNVIP-------------HIDL----NFRRLS--CRKVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRN 224 (429)
Q Consensus 167 ~~~~~~~~~-------------~~~~----l~~~l~--~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~ 224 (429)
+....+... .+.. +...+. .++..+||||.+ +......+...+...+++..+++|||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 764422111 1111 233222 368999999996 222223333334445678999999998
Q ss_pred hhhhhh--cC-CCeEEEcC----CCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcC-CCHH
Q 048064 225 KQVLRN--CH-INQIYEMK----GLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFE-RKKE 296 (429)
Q Consensus 225 ~~~~~~--~~-~~~~~~l~----~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~-~~~~ 296 (429)
..-..- +. ....+++. .|+.+|+.++|....... -....++.+.+.++|++-|+.+++=.++. .+.+
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-----Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-----LDAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-----CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 732111 10 11222332 489999999998775221 12345889999999999999998888773 2222
Q ss_pred HHHHHHHHHhhCCCccHHH-HHHHhhhcCChhhHHHHhhhhcccCCcCHHHHHHHHHHcCCChhhhHHHHHHcCceeE--
Q 048064 297 VWENAIKKLKNFLHQNILD-VLKISYDDLDNDEKNIFLDVACFFKGEDIYLVKKFFEASGFYPEIGISILVDKALIAI-- 373 (429)
Q Consensus 297 ~~~~~l~~l~~~~~~~i~~-~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~-- 373 (429)
. ....+... ...+.+ ..+..++.||++.+.++..+|++. .++-+....+.+. ......++.|.+++|+-.
T Consensus 245 q---~~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Ltg~--~ng~amLe~L~~~gLFl~~L 317 (894)
T COG2909 245 Q---SLRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALTGE--ENGQAMLEELERRGLFLQRL 317 (894)
T ss_pred H---Hhhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHhcC--CcHHHHHHHHHhCCCceeee
Confidence 1 12212111 122222 334568899999999999999983 3444444444422 234556999999999884
Q ss_pred -ccCCeEEccHHHHHHHHHHHhhhc
Q 048064 374 -NSYNKITMHDLLQELGREIVRQES 397 (429)
Q Consensus 374 -~~~~~~~mH~lv~~~a~~~~~~~~ 397 (429)
+++++|++|+++.+|.+...+.+.
T Consensus 318 dd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 318 DDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred cCCCceeehhHHHHHHHHhhhcccc
Confidence 336789999999999999887764
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.59 E-value=8.3e-13 Score=129.32 Aligned_cols=279 Identities=16% Similarity=0.089 Sum_probs=162.6
Q ss_pred cCCCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-eeEEEeechhhhhhcCCHH
Q 048064 85 PCDSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-GSCFLENIREESQKAGGLA 157 (429)
Q Consensus 85 p~~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~ 157 (429)
|...+..|+||+.++++|...+. ..+.+.|+|++|+|||++++.+++.+....+ ..+.+.++.. .....
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~----~~~~~ 100 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI----DRTRY 100 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc----CCCHH
Confidence 33567889999999999999884 4467899999999999999999998765542 2222333332 23455
Q ss_pred HHHHHHHHHHhcCC-C-CCCCHH----HHHHHhc--CCcEEEEecCCCCHH------HHHHHhccCCCCC-CCCEEEEEe
Q 048064 158 FLQQKLLSEVLKDV-N-VIPHID----LNFRRLS--CRKVLIVLDDVTCLN------QIESLVGSLDRLL-PESRILITT 222 (429)
Q Consensus 158 ~~~~~l~~~~~~~~-~-~~~~~~----~l~~~l~--~~~~LlVlDdv~~~~------~~~~l~~~l~~~~-~~~~iiiTt 222 (429)
.+...++.++.... + .....+ .+...+. +++.+||||+++... .+..+........ .+..+|.++
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEE
Confidence 66667777765421 1 111222 2444443 456899999998653 3444443322211 122355555
Q ss_pred CChhhhhhc-------CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHh----CCChHHHHHHHHhh-
Q 048064 223 RNKQVLRNC-------HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYA----QGVPLALKILGCYL- 290 (429)
Q Consensus 223 R~~~~~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~PLai~~~~~~l- 290 (429)
....+...+ .....+.+++++.++..+++..++........-..+.++.+++.+ |..+.|+.++-..+
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 544332221 113467899999999999998876322111111123444555444 44566666553321
Q ss_pred ----cC---CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhccc----CCcCHHHHHH----HHHHcC
Q 048064 291 ----FE---RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFF----KGEDIYLVKK----FFEASG 355 (429)
Q Consensus 291 ----~~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~----~~~~~~ 355 (429)
.+ -+......+.+... .......+..||.+.+.++..++... .+++...+.. ++..-+
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 13344544444431 23345568899999999988877553 2344433332 232223
Q ss_pred CC------hhhhHHHHHHcCceeEc
Q 048064 356 FY------PEIGISILVDKALIAIN 374 (429)
Q Consensus 356 ~~------~~~~l~~L~~~sLi~~~ 374 (429)
.. ....++.|...|||...
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 32 23478999999999963
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=1.6e-11 Score=119.02 Aligned_cols=277 Identities=15% Similarity=0.114 Sum_probs=158.7
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-----eeEEEeechhhhhhcCC
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-----GSCFLENIREESQKAGG 155 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~ 155 (429)
..|..++||+.++++|...+. ..+.+.|+|++|+|||++++.+++.+.+... ..+.+.++.. ...
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~----~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI----LDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC----CCC
Confidence 556789999999999999885 3468999999999999999999997754322 2233333332 234
Q ss_pred HHHHHHHHHHHHhc---CCCCC-CC----HHHHHHHh--cCCcEEEEecCCCCHH-----HHHHHhccC--CCCC-CCCE
Q 048064 156 LAFLQQKLLSEVLK---DVNVI-PH----IDLNFRRL--SCRKVLIVLDDVTCLN-----QIESLVGSL--DRLL-PESR 217 (429)
Q Consensus 156 ~~~~~~~l~~~~~~---~~~~~-~~----~~~l~~~l--~~~~~LlVlDdv~~~~-----~~~~l~~~l--~~~~-~~~~ 217 (429)
...+...+..++.. ..+.. .. ...+...+ .+++++||||++|... .+..+.... .... ....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 45666667666632 11111 11 22244444 3567899999998662 122333221 1111 2334
Q ss_pred EEEEeCChhhhhhcC-------CCeEEEcCCCCHHHHHHHHHHhhh---cCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 218 ILITTRNKQVLRNCH-------INQIYEMKGLGDDHALELFIRHAF---RQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 218 iiiTtR~~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~---~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
+|.++........+. ....+.++|++.+|..+++..++. .......+..+.+..++..+.|.|..+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455554443222111 124688999999999999998863 1222233333455567777789985543332
Q ss_pred Hhh-----c-C---CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhcccC----CcCHHHHHH----H
Q 048064 288 CYL-----F-E---RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFFK----GEDIYLVKK----F 350 (429)
Q Consensus 288 ~~l-----~-~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~----~~~~~~l~~----~ 350 (429)
... . + -+.+....+.+.+. ......++..||.+.+.++..++.... .+....+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 211 1 1 22334444443331 233456778999988888777663321 233332222 2
Q ss_pred HHHcCCC------hhhhHHHHHHcCceeEc
Q 048064 351 FEASGFY------PEIGISILVDKALIAIN 374 (429)
Q Consensus 351 ~~~~~~~------~~~~l~~L~~~sLi~~~ 374 (429)
+...+.. ....++.|...|||+..
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2222221 22368999999999974
No 8
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.52 E-value=6.1e-13 Score=139.94 Aligned_cols=320 Identities=16% Similarity=0.209 Sum_probs=193.5
Q ss_pred cccchhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE--eechhhhhhcCCHHHHHHHH
Q 048064 91 ELVGVESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL--ENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~l 163 (429)
.++||+.+++.|...+. ...++.+.|.+|||||++++++...+.+.+...+.- .......+ ...+....+.+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ip-l~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIP-LSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCc-hHHHHHHHHHH
Confidence 37999999999999987 567899999999999999999999876652211110 00000000 11122222223
Q ss_pred HHHHhcC-------------------CCCCC-C---------------------HHH---------HHHH-hcCCcEEEE
Q 048064 164 LSEVLKD-------------------VNVIP-H---------------------IDL---------NFRR-LSCRKVLIV 192 (429)
Q Consensus 164 ~~~~~~~-------------------~~~~~-~---------------------~~~---------l~~~-l~~~~~LlV 192 (429)
..++... ..... . .+. +... .+.+|.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 2222111 00000 0 000 1111 234699999
Q ss_pred ecCCC-CHH----HHHHHhccCC--CC-CCCCEEEEEeCCh--hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 048064 193 LDDVT-CLN----QIESLVGSLD--RL-LPESRILITTRNK--QVLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVD 262 (429)
Q Consensus 193 lDdv~-~~~----~~~~l~~~l~--~~-~~~~~iiiTtR~~--~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 262 (429)
+||++ -+. -++.++.... .+ ......+.|.+.. .+.........+.|.||+..+...+............
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~ 239 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP 239 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc
Confidence 99994 222 2333333322 00 0011122233322 1122223457899999999999999988875433222
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhhcCC-------CHHHHHHHHHHHhhCC-CccHHHHHHHhhhcCChhhHHHHhh
Q 048064 263 VDYKELSDKVINYAQGVPLALKILGCYLFER-------KKEVWENAIKKLKNFL-HQNILDVLKISYDDLDNDEKNIFLD 334 (429)
Q Consensus 263 ~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~-------~~~~~~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~~~~l~~ 334 (429)
.+..+.++++..|||+++..+...+... ....|..-...+.... .+++.+.+...+++||...++++..
T Consensus 240 ---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 240 ---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred ---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4668899999999999999999888653 2344554444433321 2235567889999999999999999
Q ss_pred hhcccCCcCHHHHHHHHHHcCCChhhhHHHHHHcCceeEcc----CC----eE---EccHHHHHHHHHHHhhhcCCCCCc
Q 048064 335 VACFFKGEDIYLVKKFFEASGFYPEIGISILVDKALIAINS----YN----KI---TMHDLLQELGREIVRQESTNPGNR 403 (429)
Q Consensus 335 la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~----~~----~~---~mH~lv~~~a~~~~~~~~~~~~~~ 403 (429)
.||+.+.++.+.+..++..........+-.....++|...+ .+ .. ..|+.+|+.+-....++ .|
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~-----~r 391 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES-----QR 391 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh-----hH
Confidence 99999999999999998764444444555555566666432 11 12 45888887776554333 23
Q ss_pred ccCCCcchHHHHHhcCCC
Q 048064 404 TRLWHHEDIYEVLAYNRL 421 (429)
Q Consensus 404 ~rl~~~~~i~~~l~~~~~ 421 (429)
+ ..|..|..+|..+..
T Consensus 392 q--~~H~~i~~lL~~~~~ 407 (849)
T COG3899 392 Q--YLHLRIGQLLEQNIP 407 (849)
T ss_pred H--HHHHHHHHHHHHhCC
Confidence 3 348888887765543
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.52 E-value=7.3e-14 Score=126.41 Aligned_cols=190 Identities=19% Similarity=0.283 Sum_probs=102.0
Q ss_pred ccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHH------HHHH
Q 048064 92 LVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFL------QQKL 163 (429)
Q Consensus 92 ~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~------~~~l 163 (429)
|+||+.++++|.+++. ..+.+.|+|+.|+|||+|++.+.+...+.....+++........ ...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHHHHH
Confidence 7999999999999998 47999999999999999999999988544333444432222111 011111 1111
Q ss_pred HHHHhcCC--------------CCCCCHHHHHHHhcC--CcEEEEecCCCCHH-----------HHHHHhccCCCCCCCC
Q 048064 164 LSEVLKDV--------------NVIPHIDLNFRRLSC--RKVLIVLDDVTCLN-----------QIESLVGSLDRLLPES 216 (429)
Q Consensus 164 ~~~~~~~~--------------~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~~~ 216 (429)
...+.... .....+..+...+.. ++++||+||++... .+..++..+.. ..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCc
Confidence 11121110 112223334444443 45999999996544 12223333222 2334
Q ss_pred EEEEEeCChhhhhh--------cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 217 RILITTRNKQVLRN--------CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 217 ~iiiTtR~~~~~~~--------~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
.+|+++........ .+....+.+++|+.+++.+++...+...... +...+..++++..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555544434332 2334459999999999999998865332111 12345679999999999999865
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.50 E-value=4.9e-13 Score=127.18 Aligned_cols=257 Identities=16% Similarity=0.131 Sum_probs=155.7
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
....+|+|++..++.+..++. ..+.+.|+|++|+|||+||+.+++.+...+. ....... .....
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~~~----~~~~~- 92 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGPAL----EKPGD- 92 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecccc----cChHH-
Confidence 445789999999999988774 3567999999999999999999998754321 1111100 00000
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--HHHHHhccCC-------------------CCCCCCEE
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--QIESLVGSLD-------------------RLLPESRI 218 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~-------------------~~~~~~~i 218 (429)
... +...+ +..-+|+||+++... ..+.+...+. ...+.+-|
T Consensus 93 l~~-----------------~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 93 LAA-----------------ILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred HHH-----------------HHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 111 11112 234588889887432 2122211111 01123334
Q ss_pred EEEeCChhhhhhc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHH
Q 048064 219 LITTRNKQVLRNC--HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKE 296 (429)
Q Consensus 219 iiTtR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~ 296 (429)
..|++...+...+ .....+++++++.++..+++.+.+...... -..+.+..|++.|+|.|..+..+...+.
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~----- 227 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR----- 227 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----
Confidence 5566654333222 123568999999999999999887543322 2246789999999999976666555431
Q ss_pred HHHHHHHHHhhCCC---ccHHHHHHHhhhcCChhhHHHHh-hhhcccC-CcCHHHHHHHHHHcCCChhhhHH-HHHHcCc
Q 048064 297 VWENAIKKLKNFLH---QNILDVLKISYDDLDNDEKNIFL-DVACFFK-GEDIYLVKKFFEASGFYPEIGIS-ILVDKAL 370 (429)
Q Consensus 297 ~~~~~l~~l~~~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sL 370 (429)
.|.... .-..... ......+...+..|++..+..+. .+..|.. ++..+.+...++.+....+..++ .|++.+|
T Consensus 228 ~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 228 DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCC
Confidence 111100 0000001 11223344566788888888886 5555554 47889988888776666677788 9999999
Q ss_pred eeEccCCe
Q 048064 371 IAINSYNK 378 (429)
Q Consensus 371 i~~~~~~~ 378 (429)
|+..+.|+
T Consensus 307 i~~~~~gr 314 (328)
T PRK00080 307 IQRTPRGR 314 (328)
T ss_pred cccCCchH
Confidence 98665554
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.50 E-value=1.3e-12 Score=123.25 Aligned_cols=253 Identities=19% Similarity=0.176 Sum_probs=151.5
Q ss_pred CcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQK 162 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (429)
.+|+|+++.+++|..++. ..+.+.++|++|+|||+||+.+++.+...+. ....... .....+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhHH-H
Confidence 579999999999998885 2456899999999999999999998754321 1111100 0111111 1
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--HHHHHhccCC-------------------CCCCCCEEEEE
Q 048064 163 LLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--QIESLVGSLD-------------------RLLPESRILIT 221 (429)
Q Consensus 163 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~-------------------~~~~~~~iiiT 221 (429)
.+.. + +...+|+|||++... ..+.+...+. ...+.+-|..|
T Consensus 75 ~l~~-----------------~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 75 ILTN-----------------L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHHh-----------------c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 1111 1 234578888886432 2222221111 11223334456
Q ss_pred eCChhhhhhc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHHHH
Q 048064 222 TRNKQVLRNC--HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEVWE 299 (429)
Q Consensus 222 tR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~~ 299 (429)
|+...+...+ .....+.+++++.++..+++.+.+...... -..+.+..|++.|+|.|..+..++..+. .
T Consensus 137 ~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~ 207 (305)
T TIGR00635 137 TRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVR-------D 207 (305)
T ss_pred CCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHH-------H
Confidence 6654332221 124567899999999999999887543221 2246778999999999987765555431 1
Q ss_pred HHHHHHhh--CCC---ccHHHHHHHhhhcCChhhHHHHh-hhhcccC-CcCHHHHHHHHHHcCCChhhhHH-HHHHcCce
Q 048064 300 NAIKKLKN--FLH---QNILDVLKISYDDLDNDEKNIFL-DVACFFK-GEDIYLVKKFFEASGFYPEIGIS-ILVDKALI 371 (429)
Q Consensus 300 ~~l~~l~~--~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi 371 (429)
... .... ... ......+...+..++...+..|. .+..+.. +++.+.+...++.+.......++ .|++++||
T Consensus 208 ~a~-~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 208 FAQ-VRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHH-HcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCc
Confidence 000 0000 000 01112244567788888888777 4455543 37788888888777666777788 69999999
Q ss_pred eEccCCeE
Q 048064 372 AINSYNKI 379 (429)
Q Consensus 372 ~~~~~~~~ 379 (429)
.....|++
T Consensus 287 ~~~~~g~~ 294 (305)
T TIGR00635 287 QRTPRGRI 294 (305)
T ss_pred ccCCchhh
Confidence 86655543
No 12
>PF05729 NACHT: NACHT domain
Probab=99.34 E-value=1.9e-11 Score=104.30 Aligned_cols=143 Identities=22% Similarity=0.308 Sum_probs=87.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcc-----eeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHH-HH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFK-----GSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNF-RR 183 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~-~~ 183 (429)
|++.|+|.+|+||||+++.+++.+..... ...++...+.... ......+...+............. .+. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLADLLFDQLPESIAPIEE--LLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHHHHHHHhhccchhhhHH--HHHHHH
Confidence 67999999999999999999998765532 2333444444333 111123333333332222111111 111 22
Q ss_pred hcCCcEEEEecCCCCHHH---------HHHHh-ccCCC-CCCCCEEEEEeCChhh---hhhcCCCeEEEcCCCCHHHHHH
Q 048064 184 LSCRKVLIVLDDVTCLNQ---------IESLV-GSLDR-LLPESRILITTRNKQV---LRNCHINQIYEMKGLGDDHALE 249 (429)
Q Consensus 184 l~~~~~LlVlDdv~~~~~---------~~~l~-~~l~~-~~~~~~iiiTtR~~~~---~~~~~~~~~~~l~~L~~~ea~~ 249 (429)
...++++||||++|+... +..++ ..+.. ..++++++||+|.... .........+.+.+|++++..+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 356889999999975432 22222 22222 3578999999998755 3334445689999999999999
Q ss_pred HHHHhh
Q 048064 250 LFIRHA 255 (429)
Q Consensus 250 L~~~~~ 255 (429)
++.+..
T Consensus 158 ~~~~~f 163 (166)
T PF05729_consen 158 YLRKYF 163 (166)
T ss_pred HHHHHh
Confidence 997764
No 13
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.33 E-value=4.9e-10 Score=103.78 Aligned_cols=176 Identities=17% Similarity=0.133 Sum_probs=105.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCH---HHHHH--
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHI---DLNFR-- 182 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~l~~-- 182 (429)
+.+.++|+|++|+|||||++.+++.+...-...+++.+. ..+...+...+...++......... ..+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~------~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT------RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC------CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999998865321112222211 2234456666666654432222111 12222
Q ss_pred ---HhcCCcEEEEecCCCCHH--HHHHHhccCC---CCCCCCEEEEEeCChhhhhhc----------CCCeEEEcCCCCH
Q 048064 183 ---RLSCRKVLIVLDDVTCLN--QIESLVGSLD---RLLPESRILITTRNKQVLRNC----------HINQIYEMKGLGD 244 (429)
Q Consensus 183 ---~l~~~~~LlVlDdv~~~~--~~~~l~~~l~---~~~~~~~iiiTtR~~~~~~~~----------~~~~~~~l~~L~~ 244 (429)
...+++.+||+||++... .++.+..... .......|++|.... ....+ .....+.+++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 225678999999998643 3443322111 112233455555432 21111 1234678999999
Q ss_pred HHHHHHHHHhhhcCCC--CChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 245 DHALELFIRHAFRQNL--VDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 245 ~ea~~L~~~~~~~~~~--~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
+|..+++...+..... ...-..+..+.|++.++|+|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999877643221 111235788999999999999999988776
No 14
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.32 E-value=2.6e-12 Score=119.74 Aligned_cols=286 Identities=21% Similarity=0.249 Sum_probs=196.4
Q ss_pred HhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-CCCCCCHHHHHH
Q 048064 104 SLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-VNVIPHIDLNFR 182 (429)
Q Consensus 104 ~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~ 182 (429)
..+...+.+.++|+|||||||++..+.. +...|+..+++.+....+. ...+.-.+...++-. .+....++.+..
T Consensus 9 ~~~~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD----~~~v~~~~ag~~gl~~~~g~~~~~~~~~ 83 (414)
T COG3903 9 DLLTALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD----PALVFPTLAGALGLHVQPGDSAVDTLVR 83 (414)
T ss_pred hhhhhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc----hhHhHHHHHhhcccccccchHHHHHHHH
Confidence 3334678999999999999999999999 8888999888887776544 233333333333333 223445566888
Q ss_pred HhcCCcEEEEecCCCCHH-HHHHHhccCCCCCCCCEEEEEeCChhhhhhcCCCeEEEcCCCCHH-HHHHHHHHhhhcCC-
Q 048064 183 RLSCRKVLIVLDDVTCLN-QIESLVGSLDRLLPESRILITTRNKQVLRNCHINQIYEMKGLGDD-HALELFIRHAFRQN- 259 (429)
Q Consensus 183 ~l~~~~~LlVlDdv~~~~-~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~~- 259 (429)
...+++.++|+||..... +...+...+...++.-.|+.|+|...... ......+++|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA---GEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccccccCCccccCCchhHHHHHHHHHhcc
Confidence 888999999999996553 33444444444466677899999764322 3556778888876 78888876653222
Q ss_pred --CCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHHHHHHHHH----HhhC------CCccHHHHHHHhhhcCChh
Q 048064 260 --LVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEVWENAIKK----LKNF------LHQNILDVLKISYDDLDND 327 (429)
Q Consensus 260 --~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~~~~l~~----l~~~------~~~~i~~~l~~s~~~L~~~ 327 (429)
.........+.+|++..+|.|++|..+++..+.....+....++. +... ........+.+||.-|+..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 111223456889999999999999999999887655443333322 2221 1234667899999999999
Q ss_pred hHHHHhhhhcccCCcCHHHHHHHHHHcCC-----ChhhhHHHHHHcCceeEcc---CCeEEccHHHHHHHHHHHhhhc
Q 048064 328 EKNIFLDVACFFKGEDIYLVKKFFEASGF-----YPEIGISILVDKALIAINS---YNKITMHDLLQELGREIVRQES 397 (429)
Q Consensus 328 ~~~~l~~la~f~~~~~~~~l~~~~~~~~~-----~~~~~l~~L~~~sLi~~~~---~~~~~mH~lv~~~a~~~~~~~~ 397 (429)
++..+..++.|...|+.+........... ..-..+..|++++++.... .-.|+.-+-+|.|+.+.+.+..
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999988887743333222211 2233577899999998654 2248888888888888776654
No 15
>PLN03194 putative disease resistance protein; Provisional
Probab=99.31 E-value=2e-12 Score=108.23 Aligned_cols=68 Identities=29% Similarity=0.415 Sum_probs=56.1
Q ss_pred CcEEEeEeeeccccccccc-ccchHHHHHHhhhhCHHHHHHHHHHHHHHHhhcCCcc-CCCCchHHHHHHHhhhhhccCC
Q 048064 4 AQIVIPVFYRVDPSHVRKQ-IGSFGVSFSKLKEKFPEKMQRWRSALTEAANLSGFDS-FVIRNESELIKKVVNDILEKLP 81 (429)
Q Consensus 4 ~~~v~pvfy~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~~~~~-~~~~~e~~~i~~i~~~~~~~~~ 81 (429)
+..||||||+|+|++||+| .|.+ ..+++++|++||+++|+++|++. ...++|++++++|++.+.+.+.
T Consensus 109 ~~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 109 KKRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLI 178 (187)
T ss_pred CCEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3579999999999999997 4432 35789999999999999999862 2357899999999998876653
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.23 E-value=2e-10 Score=106.62 Aligned_cols=172 Identities=24% Similarity=0.348 Sum_probs=108.6
Q ss_pred CCCCcccchhhHH---HHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRV---EEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~---~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
..-+++||.++.+ .-|.+++. ......+|||||+||||||+.++......|...--+ ..+...+..
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkdlr~ 91 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKDLRE 91 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHHHHH
Confidence 3345677777665 33455555 677889999999999999999999876665422111 222332222
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEE--EeCChhh---hhhcCCC
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILI--TTRNKQV---LRNCHIN 234 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iii--TtR~~~~---~~~~~~~ 234 (429)
-+ ... -.....+++.+|++|+|+. ..+.+.|++.+. .|..|+| ||.++.. ....+..
T Consensus 92 i~-e~a------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 92 II-EEA------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred HH-HHH------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhh
Confidence 11 111 1223457899999999984 456677776644 4766776 7776632 1223456
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCC-CCC----hhHHHHHHHHHHHhCCChHHH
Q 048064 235 QIYEMKGLGDDHALELFIRHAFRQN-LVD----VDYKELSDKVINYAQGVPLAL 283 (429)
Q Consensus 235 ~~~~l~~L~~~ea~~L~~~~~~~~~-~~~----~~~~~~~~~i~~~~~G~PLai 283 (429)
.++.+++|+.++...++.+-+.... ... .-..+....++..++|--...
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 7899999999999999988432211 111 122456778888888865443
No 17
>PRK06893 DNA replication initiation factor; Validated
Probab=99.21 E-value=8.4e-10 Score=99.28 Aligned_cols=155 Identities=17% Similarity=0.322 Sum_probs=96.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
..+.+.|+|++|+|||+|++.+++.+..+.....|+... .. ......+. ..+. +
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~~-------~~~~~~~~-----------------~~~~-~ 91 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-KS-------QYFSPAVL-----------------ENLE-Q 91 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-Hh-------hhhhHHHH-----------------hhcc-c
Confidence 456789999999999999999999876665555555421 10 00001111 1121 2
Q ss_pred cEEEEecCCCCH---HHHH-HHhccCCCC-CCCCEEE-EEeCC---------hhhhhhcCCCeEEEcCCCCHHHHHHHHH
Q 048064 188 KVLIVLDDVTCL---NQIE-SLVGSLDRL-LPESRIL-ITTRN---------KQVLRNCHINQIYEMKGLGDDHALELFI 252 (429)
Q Consensus 188 ~~LlVlDdv~~~---~~~~-~l~~~l~~~-~~~~~ii-iTtR~---------~~~~~~~~~~~~~~l~~L~~~ea~~L~~ 252 (429)
.-+|||||++.. ..++ .+...+... ..+..+| +|+.. +.+...+.....+++++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 349999999853 2332 232222211 2355554 45544 2444444556689999999999999999
Q ss_pred HhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 253 RHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
+.+...... -..+...-|++.+.|..-.+..+-..+
T Consensus 172 ~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 888644322 224678889999998887775554433
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.16 E-value=6.4e-09 Score=102.01 Aligned_cols=178 Identities=23% Similarity=0.321 Sum_probs=109.1
Q ss_pred CCCCcccchhhHHHH---HHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRVEE---IQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~---l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
....+++|++..+.. |..++. ..+.+.|+|++|+||||||+.+++.....|.. +. .. ..+... .+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~-a~-----~~~~~~-ir 78 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS-AV-----TSGVKD-LR 78 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-cc-----cccHHH-HH
Confidence 445679999988776 777776 55678999999999999999999977544321 11 11 111111 11
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE--EeCChh--hh-hhcCCC
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI--TTRNKQ--VL-RNCHIN 234 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii--TtR~~~--~~-~~~~~~ 234 (429)
.+...... ....+++.+|+||+++.. .+.+.++..+.. +..++| ||.+.. +. ...+..
T Consensus 79 ~ii~~~~~------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 79 EVIEEARQ------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HHHHHHHH------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccc
Confidence 12211110 011346789999999855 355566655442 444444 344332 11 112234
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCChHHHHHHHHh
Q 048064 235 QIYEMKGLGDDHALELFIRHAFRQNL-VDVDYKELSDKVINYAQGVPLALKILGCY 289 (429)
Q Consensus 235 ~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 289 (429)
..+.+.+++.++...++.+.+..... ...-..+....+++.++|.+..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67899999999999999886532111 10123466788999999999877555443
No 19
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.16 E-value=1.3e-09 Score=98.20 Aligned_cols=173 Identities=19% Similarity=0.255 Sum_probs=105.3
Q ss_pred CCcccc--hhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHH
Q 048064 89 KNELVG--VESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLL 164 (429)
Q Consensus 89 ~~~~vG--R~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (429)
.++|++ .+..++.+.+++. ..+.+.|+|++|+|||+||+.+++.........+++. +..... .. ..+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~---~~----~~~- 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQ---AD----PEV- 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHH---hH----HHH-
Confidence 345653 4457778887754 6778999999999999999999998765443344433 322211 00 011
Q ss_pred HHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH---H-HHHHhccCCC-CCCCCEEEEEeCChh---------hhhh
Q 048064 165 SEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN---Q-IESLVGSLDR-LLPESRILITTRNKQ---------VLRN 230 (429)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~-~~~l~~~l~~-~~~~~~iiiTtR~~~---------~~~~ 230 (429)
...+.+ .-+|||||++... . .+.+...+.. ...+..+|+||+... +...
T Consensus 85 ----------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 85 ----------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ----------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 111222 2389999997543 1 2333332221 123457888887532 1122
Q ss_pred cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHh
Q 048064 231 CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCY 289 (429)
Q Consensus 231 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 289 (429)
+.....+++++++.++...++...+...... -..+....+.+.+.|+|..+..+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2224578999999999999998765322211 22456788888999999888766544
No 20
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.7e-08 Score=96.38 Aligned_cols=275 Identities=17% Similarity=0.173 Sum_probs=163.0
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCccee-EEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGS-CFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~ 159 (429)
..|..+.+|+.+++++...|. .+..+.|+|++|+|||+.++.+++++.+..+.. +...|+.. ......+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~----~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE----LRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee----CCCHHHH
Confidence 555679999999999999886 445599999999999999999999988775544 44445544 4567777
Q ss_pred HHHHHHHHhcC-CCCCCC---HHHHHHHhc--CCcEEEEecCCCCHHH-----HHHHhccCCCCCCCCE--EEEEeCChh
Q 048064 160 QQKLLSEVLKD-VNVIPH---IDLNFRRLS--CRKVLIVLDDVTCLNQ-----IESLVGSLDRLLPESR--ILITTRNKQ 226 (429)
Q Consensus 160 ~~~l~~~~~~~-~~~~~~---~~~l~~~l~--~~~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~~~--iiiTtR~~~ 226 (429)
...++..+... ...... ...+.+.+. ++.+++|||+++.... +-.|....... .++ +|..+-+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~ 167 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHH
Confidence 77777777533 222222 222555554 4789999999975532 22333222222 343 333444443
Q ss_pred hhhhc-------CCCeEEEcCCCCHHHHHHHHHHhh---hcCCCCChhHHHHHHHHHHHhCCCh-HHHHHHHHh--hcC-
Q 048064 227 VLRNC-------HINQIYEMKGLGDDHALELFIRHA---FRQNLVDVDYKELSDKVINYAQGVP-LALKILGCY--LFE- 292 (429)
Q Consensus 227 ~~~~~-------~~~~~~~l~~L~~~ea~~L~~~~~---~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~~--l~~- 292 (429)
....+ -....+..+|.+.+|-.+++..++ +..........++...++...+|-. .||..+-.. +.+
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 22222 122347899999999999998876 3444444455555566666666532 333333221 111
Q ss_pred -----CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhcccCCcCHHHH----HHHHHHcCC---Chhh
Q 048064 293 -----RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFFKGEDIYLV----KKFFEASGF---YPEI 360 (429)
Q Consensus 293 -----~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l----~~~~~~~~~---~~~~ 360 (429)
.+.+.-..+.+. --...+...+..|+.+.+..+..++....++....+ ..++...+. ....
T Consensus 248 ~~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ 320 (366)
T COG1474 248 EGSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSD 320 (366)
T ss_pred hCCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHH
Confidence 011111111111 112234455788999988888777766444544333 333333343 2234
Q ss_pred hHHHHHHcCceeEc
Q 048064 361 GISILVDKALIAIN 374 (429)
Q Consensus 361 ~l~~L~~~sLi~~~ 374 (429)
.++.|...|++...
T Consensus 321 ii~~L~~lgiv~~~ 334 (366)
T COG1474 321 IISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHhcCeEEee
Confidence 68889999999864
No 21
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.4e-08 Score=102.77 Aligned_cols=179 Identities=18% Similarity=0.236 Sum_probs=113.7
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcCc---------------------ceeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNF---------------------KGSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~ 142 (429)
....++||.+..++.|.+++.. .+.+.++|+.|+||||+|+.+++.+.... ...+.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4457899999999999999982 45678999999999999999998763210 01111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+. .. + ..+... .+.++..... .-..++.-++|||+++.. ..++.|+..+.....+.++|+
T Consensus 93 ID-Aa--s--~rgVDd-IReLIe~a~~------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 93 MD-AA--S--NRGVDE-MAALLERAVY------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred ec-cc--c--cccHHH-HHHHHHHHHh------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 10 00 0 011111 1111111100 001234568999999855 457788887776667888887
Q ss_pred EeCChh-hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHH
Q 048064 221 TTRNKQ-VLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKI 285 (429)
Q Consensus 221 TtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~ 285 (429)
+|.+.. +... .+....+++.+++.++..+.+.+.+...... -..+....|++.++|... +|.+
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 776653 3322 2345689999999999999998876443321 124667889999998764 4444
No 22
>PRK08727 hypothetical protein; Validated
Probab=99.06 E-value=1.2e-08 Score=92.12 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=99.0
Q ss_pred Ccccchh-hHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 90 NELVGVE-SRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 90 ~~~vGR~-~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
++|++.. ..+..+..... ....+.|+|++|+|||+|++.+++...++.....|+. .... ... ....+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~~---~~~----~~~~~-- 88 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQAA---AGR----LRDAL-- 88 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHHh---hhh----HHHHH--
Confidence 4455444 34444444433 3456999999999999999999998776654455554 2110 000 00111
Q ss_pred HhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH---HH-HHHhccCCC-CCCCCEEEEEeCCh---------hhhhhcC
Q 048064 167 VLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN---QI-ESLVGSLDR-LLPESRILITTRNK---------QVLRNCH 232 (429)
Q Consensus 167 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~~~iiiTtR~~---------~~~~~~~ 232 (429)
..+. ..-+|||||++... .+ ..+...+.. ...+..||+||+.. .+...+.
T Consensus 89 ---------------~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 89 ---------------EALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA 152 (233)
T ss_pred ---------------HHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh
Confidence 1121 23489999997331 12 223322221 13466799999854 2222233
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 233 INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 233 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
....+++++++.++..+++.+++...... -..+....|++.++|-.-.+..
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r~~l~ 203 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELAGLVA 203 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHHHH
Confidence 45688999999999999999876443221 2245677888888877665533
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.04 E-value=9.5e-09 Score=89.38 Aligned_cols=177 Identities=21% Similarity=0.265 Sum_probs=101.0
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
..-.+|||.++.+..+.-++. ....+.+|||||+||||||.-+++.+..+|. +.+..... ....+
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~----~~sg~~i~----k~~dl 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK----ITSGPAIE----KAGDL 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE----EEECCC------SCHHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE----eccchhhh----hHHHH
Confidence 556899999999998876664 3567999999999999999999999876653 11111000 01111
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--HHHHHhccCCCC--------CCCC-----------EE
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--QIESLVGSLDRL--------LPES-----------RI 218 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~--------~~~~-----------~i 218 (429)
. .+...+. ++-+|++|+++... +-+.|.+.+.++ +++. -|
T Consensus 93 ~------------------~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 93 A------------------AILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp H------------------HHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred H------------------HHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 1 1112222 35588899998554 344444433221 2222 23
Q ss_pred EEEeCChhhhhhcC--CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcC
Q 048064 219 LITTRNKQVLRNCH--INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFE 292 (429)
Q Consensus 219 iiTtR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~ 292 (429)
=.|||...+...+. ..-..+++.++.+|-..++.+.+..-.. .-..+.+.+|+.+|.|.|--..-+-..++.
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 34888765544442 2345689999999999999887633221 123578999999999999876666555543
No 24
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=5.1e-08 Score=93.94 Aligned_cols=190 Identities=14% Similarity=0.180 Sum_probs=112.5
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEe-echhhhhh-cCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLE-NIREESQK-AGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~-~~~~~~ 158 (429)
....+++|.+..++.+.+.+. -.+.+.++|++|+||||+|+.+++.+..... ..|-.+ .+...... ..++..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 445789999999999999887 2456799999999999999999997642110 000000 00000000 000000
Q ss_pred HHHHHHHHHhcC-CCCCCCHHHHHHHh-----cCCcEEEEecCCCCHH--HHHHHhccCCCCCCCCEEEEEeCCh-hhhh
Q 048064 159 LQQKLLSEVLKD-VNVIPHIDLNFRRL-----SCRKVLIVLDDVTCLN--QIESLVGSLDRLLPESRILITTRNK-QVLR 229 (429)
Q Consensus 159 ~~~~l~~~~~~~-~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~ 229 (429)
+... ......+..+.+.+ .+++-++|||+++... .++.++..+....+...+|++|.+. .+.+
T Consensus 93 --------~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 93 --------IDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred --------ecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 0000 00001111122221 2345699999998654 5677777777666677777666543 3333
Q ss_pred hc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 230 NC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 230 ~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
.+ +....+++.+++.++..+++...+...... -..+.+..+++.++|.|..+...
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 32 234689999999999999988866443311 12356788999999998754433
No 25
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.04 E-value=2.1e-08 Score=95.27 Aligned_cols=183 Identities=16% Similarity=0.213 Sum_probs=110.4
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
..-.+++|++..++.+..++. ..+.+.|+|++|+||||+++.+++.+... +...+...+... ......+.. .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~----~~~~~~~~~-~ 88 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD----ERGIDVIRN-K 88 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc----ccchHHHHH-H
Confidence 334679999999999999987 44568999999999999999999986433 211111111111 111111111 1
Q ss_pred HHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhh-cCCCeEEEc
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRN-CHINQIYEM 239 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~-~~~~~~~~l 239 (429)
........+ .....+-++++|+++.. .....+...+....+.+.+|+++... .+... ......+++
T Consensus 89 i~~~~~~~~----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 89 IKEFARTAP----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HHHHHhcCC----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 111111100 00123568999999744 33455555555555667777766433 12111 112346899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 240 KGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 240 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
++++.++...++...+...... -..+.+..+++.++|.+.-+...
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999998877543321 12457888999999998765433
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.03 E-value=2.3e-08 Score=95.77 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=111.2
Q ss_pred CCCCcccchhhHHHHHHHhhcC--CCEEEEEcCCCcchHHHHHHHHHHhhcCc-ceeEEEeechhhhhhcCCHHHHHH--
Q 048064 87 DSKNELVGVESRVEEIQSLLGA--APLLGIWGIGGIGKTTIARVIFNRISRNF-KGSCFLENIREESQKAGGLAFLQQ-- 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~-- 161 (429)
.....++|++..++.|.+++.. .+.+.++|++|+||||+|+.+++.+.... ...+...++..... .....+..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~ 89 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD--QGKKYLVEDP 89 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh--cchhhhhcCc
Confidence 3346789999999999999883 34789999999999999999999875432 22222222221110 00000000
Q ss_pred HHHHHHhcC-CCCCCCHHHHHH---Hh------cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhh
Q 048064 162 KLLSEVLKD-VNVIPHIDLNFR---RL------SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVL 228 (429)
Q Consensus 162 ~l~~~~~~~-~~~~~~~~~l~~---~l------~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~ 228 (429)
.+....... .......+.+.. .. ...+-+|||||++.. .....+...+....+.+++|+|+... .+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000000 000001111111 11 123458999999754 23444544444445567777776543 222
Q ss_pred hhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 229 RNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 229 ~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
..+ .....+.+.+++.++...++...+...... -..+.++.+++.++|++-.+...
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 234578899999999999998876443322 22467888999999987665443
No 27
>PF14516 AAA_35: AAA-like domain
Probab=99.03 E-value=2.1e-07 Score=88.42 Aligned_cols=199 Identities=13% Similarity=0.188 Sum_probs=120.9
Q ss_pred CCCCcccchhhHHHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh-hcCCHHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ-KAGGLAFLQQKLL 164 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 164 (429)
..+..+|.|...-+++.+.+. ....+.|.|+..+|||+|...+.++..+.- ..+...++..... ...+...+.+.+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~-~~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQG-YRCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCC-CEEEEEEeecCCCcccCCHHHHHHHHH
Confidence 556778899967777777666 589999999999999999999999886542 2222333433221 1345555555555
Q ss_pred HHHhcCCCCCCC--------------HHH-HHHH-h--cCCcEEEEecCCCCHH----HHHHHhccCCC------CC---
Q 048064 165 SEVLKDVNVIPH--------------IDL-NFRR-L--SCRKVLIVLDDVTCLN----QIESLVGSLDR------LL--- 213 (429)
Q Consensus 165 ~~~~~~~~~~~~--------------~~~-l~~~-l--~~~~~LlVlDdv~~~~----~~~~l~~~l~~------~~--- 213 (429)
..+......... ... +.+. + .+++++|+||++|..- ..+.++..+.. ..
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 555443111111 111 2222 2 2589999999997442 12333332211 01
Q ss_pred CCCEEEEEeCCh-hhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 214 PESRILITTRNK-QVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 214 ~~~~iiiTtR~~-~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
...++++....+ ..... ++....+.|++++.+|...|+..+-.. .. .+..+++...++|+|..+..++
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHHH
Confidence 111222222111 11111 234557899999999999999876422 11 2338999999999999999999
Q ss_pred HhhcC
Q 048064 288 CYLFE 292 (429)
Q Consensus 288 ~~l~~ 292 (429)
..+..
T Consensus 241 ~~l~~ 245 (331)
T PF14516_consen 241 YLLVE 245 (331)
T ss_pred HHHHH
Confidence 98865
No 28
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.02 E-value=2.4e-08 Score=101.86 Aligned_cols=277 Identities=16% Similarity=0.127 Sum_probs=143.8
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcC-----cc-eeEEEeechhhhhhc
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRN-----FK-GSCFLENIREESQKA 153 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~~~~ 153 (429)
..|..++||+.++++|...|. ...++.|+|++|+|||++++.+.+++.+. .+ ..+...++.. .
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----V 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----c
Confidence 566889999999999999886 23456799999999999999999876432 12 2223333322 2
Q ss_pred CCHHHHHHHHHHHHhcCCCC--CCC---HHHHHHHhc---CCcEEEEecCCCCHH--HHHHHhccCCCC-CCCCEEEE--
Q 048064 154 GGLAFLQQKLLSEVLKDVNV--IPH---IDLNFRRLS---CRKVLIVLDDVTCLN--QIESLVGSLDRL-LPESRILI-- 220 (429)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~--~~~---~~~l~~~l~---~~~~LlVlDdv~~~~--~~~~l~~~l~~~-~~~~~iii-- 220 (429)
.....+...+..++....+. ... ++.+...+. ....+||||+++... .-+.|...+.+. ..+++|++
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 34455555555555433211 111 222333331 224589999998543 112222122111 23455433
Q ss_pred EeCChhhh----hhcC---CCeEEEcCCCCHHHHHHHHHHhhhcC-CCCChhHHHHHHHHHHHhCCC-hHHHHHHHHhhc
Q 048064 221 TTRNKQVL----RNCH---INQIYEMKGLGDDHALELFIRHAFRQ-NLVDVDYKELSDKVINYAQGV-PLALKILGCYLF 291 (429)
Q Consensus 221 TtR~~~~~----~~~~---~~~~~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~~l~ 291 (429)
+|.+.... +.+. ....+.++|++.++..+++..++... ....++..++..+.+....|- =.||.++-....
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 44332211 1111 12246789999999999999987432 122222222222222244443 344444332221
Q ss_pred --CC---CHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhcccC-----CcCHHHHH----HHHHHc---
Q 048064 292 --ER---KKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFFK-----GEDIYLVK----KFFEAS--- 354 (429)
Q Consensus 292 --~~---~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~-----~~~~~~l~----~~~~~~--- 354 (429)
+. ..+....+...+. ...+...+..||.+.+-+|..+..... +++...+. .++...
T Consensus 988 ikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 11 1222223322221 122344567899888888775554322 13332222 233211
Q ss_pred -CCC-----hhhhHHHHHHcCceeEc
Q 048064 355 -GFY-----PEIGISILVDKALIAIN 374 (429)
Q Consensus 355 -~~~-----~~~~l~~L~~~sLi~~~ 374 (429)
|.. ....+.+|...|+|...
T Consensus 1061 iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1061 IGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred cCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 122 23367899999999875
No 29
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.01 E-value=2.4e-08 Score=90.14 Aligned_cols=171 Identities=15% Similarity=0.244 Sum_probs=100.3
Q ss_pred cccch-hhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHH
Q 048064 91 ELVGV-ESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEV 167 (429)
Q Consensus 91 ~~vGR-~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (429)
.++|- ...+..+.++.. ..+.+.|+|++|+|||+|++.+++........+.|+. +.... ... ..+
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~---~~~----~~~---- 91 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA---WFV----PEV---- 91 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh---hhh----HHH----
Confidence 33463 233444555443 5578999999999999999999998765533344443 22110 000 011
Q ss_pred hcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH---HHHH-HHhccCCCC-CCC-CEEEEEeCCh---------hhhhhcC
Q 048064 168 LKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL---NQIE-SLVGSLDRL-LPE-SRILITTRNK---------QVLRNCH 232 (429)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~-~l~~~l~~~-~~~-~~iiiTtR~~---------~~~~~~~ 232 (429)
.+.+.+ --+|+|||++.. ..++ .+...+... ..| .++|+||+.. .+...+.
T Consensus 92 -------------~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 92 -------------LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred -------------HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 111111 138999999743 2222 222222111 123 4788988755 2233344
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHh
Q 048064 233 INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCY 289 (429)
Q Consensus 233 ~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 289 (429)
...++++.+++.++-.+++.+.+...... -.++...-|++.+.|..-.+..+-..
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 55789999999999999998866433211 22567888889998887766554433
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=4.9e-08 Score=97.21 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=113.8
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhc--CcceeEEEeechh-hhhh-cCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISR--NFKGSCFLENIRE-ESQK-AGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~-~~~~-~~~~~~~ 159 (429)
....+++|.+..++.|..++. -.+.+.++|++|+||||+|+.+++.+.. .+...|+.+.... .... ..++..+
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 445689999999999999887 2455699999999999999999997642 1222222221000 0000 0000000
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhc
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRNC 231 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~ 231 (429)
- .........+..+...+ .+++-++|||+++.. ..++.++..+....+...+|+++... .+...+
T Consensus 91 ~-------~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 91 D-------AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred c-------ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 0 00000011111122211 235669999999854 45777777776655566656555433 332222
Q ss_pred -CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 232 -HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 232 -~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
.....+++.+++.++...++.+.+....... ..+.+..|++.++|.+--+..
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~aln 216 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDAES 216 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 3356899999999999999988774443221 246788999999999976543
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=4.5e-08 Score=97.94 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=114.0
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---e-----eEEEe-echhhhhh-c
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---G-----SCFLE-NIREESQK-A 153 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~-----~~~~~-~~~~~~~~-~ 153 (429)
....++||.+..++.|.+++. -.+.+.++|+.|+||||+|+.+++.+-..-+ . .|-.+ .+...... .
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 445789999999999999998 2356789999999999999999997642100 0 00000 00000000 0
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCCCHHHHHHH-----hcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeC-C
Q 048064 154 GGLAFLQQKLLSEVLKD-VNVIPHIDLNFRR-----LSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTR-N 224 (429)
Q Consensus 154 ~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR-~ 224 (429)
.++. .+... ....+.+..+.+. ..++.-++|||+++.. ...+.|+..+.....++.+|++|. .
T Consensus 93 pDvi--------EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 93 VDYI--------EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred Ccce--------EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 0000 00000 0001111112222 1345669999999855 577888888877666777665544 4
Q ss_pred hhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 225 KQVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 225 ~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
..+...+ +....+++.+++.++..+.+.+.+...... ...+.++.|++.++|.|.-...+
T Consensus 165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4444332 234678999999999999988776433221 12355788999999999654433
No 32
>PLN03025 replication factor C subunit; Provisional
Probab=99.00 E-value=3.6e-08 Score=93.42 Aligned_cols=182 Identities=16% Similarity=0.225 Sum_probs=110.2
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhc-CcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR-NFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
..-.+++|.++.++.|..++. ..+.+.++|++|+||||+|..+++.+.. .+...+.-.+... ..+... .+..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd----~~~~~~-vr~~ 84 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD----DRGIDV-VRNK 84 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc----cccHHH-HHHH
Confidence 445678999999999988876 4566889999999999999999998633 2322221111111 112221 1222
Q ss_pred HHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhc-CCCeEEEc
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRNC-HINQIYEM 239 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l 239 (429)
........... ..++.-++|||+++.. .....+...+....+.+++++++... .+.+.+ .....+++
T Consensus 85 i~~~~~~~~~~---------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 85 IKMFAQKKVTL---------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred HHHHHhccccC---------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 11111110000 0134669999999855 34455555555445567777666443 222221 12357899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 048064 240 KGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 284 (429)
Q Consensus 240 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 284 (429)
++++.++....+...+-.....- ..+....+++.++|..-.+.
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 99999999999988774433221 24568889999999875543
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=98.99 E-value=3.5e-08 Score=98.74 Aligned_cols=181 Identities=15% Similarity=0.212 Sum_probs=111.5
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQ 160 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
....+++|.+..++.|.+|+. ..+.+.|+|++|+||||+|..+++.+. +. +...+... ..... ..
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielnasd----~r~~~-~i 81 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNASD----QRTAD-VI 81 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcccc----cccHH-HH
Confidence 445679999999999999986 278899999999999999999999873 22 11112211 11111 12
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH------HHHHHhccCCCCCCCCEEEEEeCChh-hhh-h-c
Q 048064 161 QKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN------QIESLVGSLDRLLPESRILITTRNKQ-VLR-N-C 231 (429)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~-~-~ 231 (429)
..+........ .....++-+||||+++... ....+...+. ..+..||+|+.+.. ... . .
T Consensus 82 ~~~i~~~~~~~----------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 82 ERVAGEAATSG----------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHHHHhhccC----------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 22222111110 0011356799999998552 2455554444 23344666654432 111 1 1
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 232 HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 232 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
.....+.+++++.++....+...+......- ..+....|++.++|....+......+
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2356789999999999999888764433221 24678899999999887665544433
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=5.4e-08 Score=100.54 Aligned_cols=186 Identities=17% Similarity=0.189 Sum_probs=116.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--C-CCEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEeec-hhhh---------
Q 048064 87 DSKNELVGVESRVEEIQSLLG--A-APLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLENI-REES--------- 150 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~-~~~~--------- 150 (429)
....++||.+..++.|.+++. . .+.+.++|++|+||||+|+.+++.+..... ..|..+.. ....
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 445789999999999999887 2 345689999999999999999998643210 01111100 0000
Q ss_pred --hh-cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-
Q 048064 151 --QK-AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN- 224 (429)
Q Consensus 151 --~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~- 224 (429)
.. ...... .+.+...+. ..-..++.-++|||+++.. ...+.|+..+.....+.++|++|.+
T Consensus 93 idAas~~kVDd-IReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 93 VDAASRTKVDD-TRELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred eccccccCHHH-HHHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 00 011111 111211110 0112356779999999854 5778888888776677776665544
Q ss_pred hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 225 KQVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 225 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
..+... ......|++.+|+.++....+.+.+...... -..+.+..|+..++|.|.-+..+.
T Consensus 160 ~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 160 QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444333 2345789999999999999998876433211 224568889999999997554443
No 35
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.4e-07 Score=90.28 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=114.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCc--cee-EE--EeechhhhhhcCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNF--KGS-CF--LENIREESQKAGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~-~~--~~~~~~~~~~~~~~~~ 158 (429)
.....++|.+...+.|.+.+. -.+.+.++|+.|+||+|+|..+++.+-.+- ... +- ...+.. . .. -.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~---~~-c~ 90 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-D---PD-HP 90 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-C---CC-Ch
Confidence 556789999999999999887 355789999999999999999999763221 100 00 000000 0 00 00
Q ss_pred HHHHHHHHH-hc---------CCC----CCCCHHH---HHHHhc-----CCcEEEEecCCC--CHHHHHHHhccCCCCCC
Q 048064 159 LQQKLLSEV-LK---------DVN----VIPHIDL---NFRRLS-----CRKVLIVLDDVT--CLNQIESLVGSLDRLLP 214 (429)
Q Consensus 159 ~~~~l~~~~-~~---------~~~----~~~~~~~---l~~~l~-----~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~ 214 (429)
..+.+.... .+ +.. ..-.++. +.+.+. +.+.++|||+++ +......|+..+....+
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 011110000 00 000 0011222 333332 456799999997 44567788887776556
Q ss_pred CCEEEEEeCChh-hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 215 ESRILITTRNKQ-VLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 215 ~~~iiiTtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
++.+|++|.+.. +... .+....+.+.+++.++..+++...... .. .+....++..++|+|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 676777666553 3333 234568999999999999999876421 11 1223678999999998665443
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=5.6e-08 Score=97.47 Aligned_cols=179 Identities=19% Similarity=0.181 Sum_probs=114.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---------------------eeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---------------------GSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~ 142 (429)
....+++|.+...+.|.+++. -.+.+.++|++|+||||+|+.+++.+-.... ..+.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 445789999999999999997 2457799999999999999999987632110 1111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+. .. + ...... .+.++..... .-..++.-++|||+++.. ...+.++..+....++..+|+
T Consensus 92 ID-AA--s--~~~Vdd-IReli~~~~y------------~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FIL 153 (702)
T PRK14960 92 ID-AA--S--RTKVED-TRELLDNVPY------------APTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLF 153 (702)
T ss_pred ec-cc--c--cCCHHH-HHHHHHHHhh------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEE
Confidence 10 00 0 001111 1111111100 011245679999999855 467778877776666777777
Q ss_pred EeCChh-hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 221 TTRNKQ-VLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 221 TtR~~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
+|.+.. +... ......+++.+++.++....+...+...... -..+.+..|++.++|.+..+..
T Consensus 154 aTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 154 ATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 776542 2212 2345689999999999999998876443322 2245678899999998855543
No 37
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.97 E-value=2.1e-08 Score=90.38 Aligned_cols=178 Identities=19% Similarity=0.243 Sum_probs=102.5
Q ss_pred CCccccCCCCCccc-chhh-HHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 80 LPKVVPCDSKNELV-GVES-RVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 80 ~~~~~p~~~~~~~v-GR~~-~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
++...| ...++|+ |... .+..+.++.. ..+.+.|+|++|+|||+||..+++.....-....++. ......
T Consensus 9 ~~~~~~-~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~~~--- 83 (227)
T PRK08903 9 LGPPPP-PTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASPLL--- 83 (227)
T ss_pred CCCCCh-hhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHhHH---
Confidence 344444 3345555 5433 3444544443 4578999999999999999999998654433344443 211110
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCC-CCCC-EEEEEeCChhhh--
Q 048064 155 GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRL-LPES-RILITTRNKQVL-- 228 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~-~~~~-~iiiTtR~~~~~-- 228 (429)
.+ .. ....-+||+||++.. .....+...+... ..+. .+|+|++.....
T Consensus 84 -------~~------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~ 137 (227)
T PRK08903 84 -------AF------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALP 137 (227)
T ss_pred -------HH------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCC
Confidence 00 00 112347999999744 2223333333211 1233 366666643211
Q ss_pred ------hhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 229 ------RNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 229 ------~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
..+.....+++++++.++-..++.+.+...... -..+....+++.+.|++..+..+...+
T Consensus 138 l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 138 LREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 122234688999999998888777654322211 224678888899999999887776554
No 38
>PRK05642 DNA replication initiation factor; Validated
Probab=98.95 E-value=4.7e-08 Score=88.15 Aligned_cols=154 Identities=20% Similarity=0.300 Sum_probs=93.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
...+.|+|++|+|||+|++.+++.+......++|+. ..... .. ...+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~----------~~--------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELL----------DR--------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHH----------hh--------------hHHHHHhhhhCC
Confidence 367899999999999999999998765544445544 22111 00 011222333222
Q ss_pred EEEEecCCCCH---HHH-HHHhccCCC-CCCCCEEEEEeCChh---------hhhhcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 189 VLIVLDDVTCL---NQI-ESLVGSLDR-LLPESRILITTRNKQ---------VLRNCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 189 ~LlVlDdv~~~---~~~-~~l~~~l~~-~~~~~~iiiTtR~~~---------~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
+|||||++.. ..+ +.+...+.. ...|..+|+|++... +...+....++++.+++.++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 7889999633 232 223333321 134677888887541 1222233467899999999999999866
Q ss_pred hhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 255 AFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
+...... -..++..-|++.+.|..-.+..+-..|
T Consensus 179 a~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGLH--LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5433211 124677888888888877665554433
No 39
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=2.2e-07 Score=91.60 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=114.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC---------------------cceeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN---------------------FKGSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~ 142 (429)
....++||.+..++.|.+.+. -.+.+.++|++|+||||+|+.+++.+-.. +...+.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 455789999999999998887 34579999999999999999998864211 111122
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+...+ ..+... .+.+....... -..++.-++|+|+++.. ...+.|+..+....+.+.+|+
T Consensus 90 idaas-----~~~vdd-IR~Iie~~~~~------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 90 IDAAS-----NTSVDD-IKVILENSCYL------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred Eeccc-----CCCHHH-HHHHHHHHHhc------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 21100 111111 11111111100 01235568999999854 467788888877677777666
Q ss_pred EeC-Chhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 221 TTR-NKQVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 221 TtR-~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
+|. ...+... ......+++.+++.++....+...+...... -..+.+..|++.++|.+..+..
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 554 3344333 2345678999999999999998877544322 1245678899999998864433
No 40
>PF13173 AAA_14: AAA domain
Probab=98.93 E-value=1.3e-08 Score=82.87 Aligned_cols=120 Identities=16% Similarity=0.169 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
.+++.|.|+.|+|||||+++++++.. .....+++. +..... .... .. ...+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~-----~~~~--~~----------~~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD-----RRLA--DP----------DLLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH-----HHHh--hh----------hhHHHHHHhhccCC
Confidence 47899999999999999999998875 222333332 322111 0000 00 01112233333467
Q ss_pred EEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhhhh-c-----CCCeEEEcCCCCHHHH
Q 048064 189 VLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVLRN-C-----HINQIYEMKGLGDDHA 247 (429)
Q Consensus 189 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~-~-----~~~~~~~l~~L~~~ea 247 (429)
.+++||+++....|...+..+.+..+..+|++|+.+...+.. . +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999999888887777666655567899999987755432 1 2234678999998774
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.2e-07 Score=92.39 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=111.9
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcCcce---eEEEeechhhhhhcCCHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFKG---SCFLENIREESQKAGGLAFLQ 160 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 160 (429)
....+++|.+..++.|..++.. .+.+.++|++|+||||+|+.+++.+-..... .|..+. ....+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~---------sC~~i~ 85 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT---------SCLEIT 85 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc---------HHHHHH
Confidence 4557899999999999998872 3357999999999999999999976432110 111100 000000
Q ss_pred HHHHHHHhc----CCCCCCCHHHHHHH-----hcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CChhhh
Q 048064 161 QKLLSEVLK----DVNVIPHIDLNFRR-----LSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RNKQVL 228 (429)
Q Consensus 161 ~~l~~~~~~----~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~~~~ 228 (429)
......+.. .....+.+..+.+. ..++.-++|||+++.. ..++.|+..+........+|++| ....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 000000000 00001111112111 2345679999999854 56888888877655566655444 434443
Q ss_pred hhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 048064 229 RNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 283 (429)
Q Consensus 229 ~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 283 (429)
..+ +....|.+.+++.++..+.+...+...... -..+....|++.++|.+.-.
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHHH
Confidence 332 334679999999999999988876433321 12467889999999998544
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.91 E-value=3.5e-08 Score=95.33 Aligned_cols=170 Identities=19% Similarity=0.288 Sum_probs=99.5
Q ss_pred CCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 88 SKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
....+.|++..+++|.+.+. .++.+.|+|++|+|||++|+.+++.....|-.. . ...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~-~~~---- 191 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V-GSE---- 191 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c-hHH----
Confidence 34578999999999988763 256699999999999999999999875443211 1 000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHH-hcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--C
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRR-LSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--L 213 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~ 213 (429)
+....... ....+..+... -...+.+|+|||++... .+..++..+... .
T Consensus 192 ------l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 192 ------LVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred ------HHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00000000 00001112222 23457899999997531 122333222221 2
Q ss_pred CCCEEEEEeCChhhh-----hhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 214 PESRILITTRNKQVL-----RNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
.+..||.||...... ........+.++..+.++..++|..+......... -....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 456677777754322 11123567899999999999999887644332211 11456777777654
No 43
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=4.8e-08 Score=92.39 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=112.6
Q ss_pred CcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhc-----CcceeEEEeechhhhhhcCCHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISR-----NFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
.+++|-+..++.+.+.+. -++...++|+.|+||||+|..+++.+.. .++....+...... ...... .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~---~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKK---SIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCC---CCCHHH-HH
Confidence 467898999999999887 4567799999999999999999997532 22333222211110 112222 11
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCC--CHHHHHHHhccCCCCCCCCEEEEEeCChhh-hhh-cCCCeEE
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVT--CLNQIESLVGSLDRLLPESRILITTRNKQV-LRN-CHINQIY 237 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~-~~~~~~~ 237 (429)
.+...+... -..+++-++|+|+++ +....+.++..+....+++.+|++|.+.+. ++. .+....+
T Consensus 80 ~~~~~~~~~------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~ 147 (313)
T PRK05564 80 NIIEEVNKK------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIY 147 (313)
T ss_pred HHHHHHhcC------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceee
Confidence 222221111 012345577788776 556788999999887788888887766543 222 2345689
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 238 EMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 238 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
++.+++.++...++..... . . ..+.+..++..++|.|.-+...
T Consensus 148 ~~~~~~~~~~~~~l~~~~~--~-~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 148 KLNRLSKEEIEKFISYKYN--D-I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eCCCcCHHHHHHHHHHHhc--C-C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999988876542 1 1 1344678899999998765433
No 44
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=2.4e-07 Score=91.98 Aligned_cols=188 Identities=19% Similarity=0.194 Sum_probs=113.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-------eeEEEee-chhhhhh-cC
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-------GSCFLEN-IREESQK-AG 154 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~~-~~~~~~~-~~ 154 (429)
....+++|-+..++.|...+. -.+.+.++|++|+||||+|+.+++.+-.... ..|..+. +...... ..
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 455789999999999998776 2357999999999999999999997632110 0011100 0000000 00
Q ss_pred CHHHHHHHHHHHHhc-CCCCCCCHHHHHHH-----hcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE-EeCCh
Q 048064 155 GLAFLQQKLLSEVLK-DVNVIPHIDLNFRR-----LSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI-TTRNK 225 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii-TtR~~ 225 (429)
++.. +.. .....+.+..+.+. +.+++-++|||+++.. ..++.|+..+....+.+.+|+ ||+..
T Consensus 98 Dv~e--------idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 98 DIIE--------IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred cEEE--------eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 0000 000 00011111112111 2345678999999864 467788877776566666555 55544
Q ss_pred hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 048064 226 QVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 284 (429)
Q Consensus 226 ~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 284 (429)
.+...+ .....+++.+++.++...++...+...... -..+.+..|++.++|.+.-+.
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 444432 234678999999999999998887544322 124567889999999885543
No 45
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=8e-08 Score=95.99 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=110.0
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcC---------------------cceeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN---------------------FKGSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~ 142 (429)
....+++|.+..++.|...+.. .+.+.++|++|+||||+|+.+++.+... |...+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4457899999999999998872 3457899999999999999999875321 111111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+. ... ..+...+ +.++..+.. .-..+++-++|+|+++.. ...+.|+..+......+.+|+
T Consensus 93 id-aas----~~gvd~i-r~ii~~~~~------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 93 ID-AAS----RTGVEET-KEILDNIQY------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred ee-ccc----ccCHHHH-HHHHHHHHh------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 10 000 1111111 111111100 012345679999999844 567788888876666676665
Q ss_pred -EeCChhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 048064 221 -TTRNKQVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL 281 (429)
Q Consensus 221 -TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 281 (429)
||....+... ......+++.+++.++....+...+...... ...+.+..|++.++|.+.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 4443334433 2345789999999999998888765433211 224567889999999775
No 46
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=5.2e-08 Score=98.79 Aligned_cols=191 Identities=17% Similarity=0.152 Sum_probs=114.3
Q ss_pred CCCCcccchhhHHHHHHHhhcCC---CEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEe-echhhhhh-cCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGAA---PLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLE-NIREESQK-AGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~---~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~-~~~~~~ 158 (429)
....++||.+..++.|.+.+... +.+.++|+.|+||||+|+.+++.+-.... ..|-.+ .+...... ..++..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 45578999999999999998733 34789999999999999999987633210 000000 00000000 000000
Q ss_pred HHHHHHHHHhcC-CCCCCCHHHHHHH-----hcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-hhhhh
Q 048064 159 LQQKLLSEVLKD-VNVIPHIDLNFRR-----LSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN-KQVLR 229 (429)
Q Consensus 159 ~~~~l~~~~~~~-~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~ 229 (429)
+... ....+.+..+... ..++.-++|||+++.. ...+.|+..+....++.++|++|.+ ..+..
T Consensus 93 --------idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 93 --------IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred --------ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000 0001111112111 2356679999999844 5778888888776667766665544 44433
Q ss_pred h-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 230 N-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 230 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
. .+....+++.+++.++....+...+...... ...+....|+..++|.+.-+..+.
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 2335789999999999999998776333221 123567889999999887554443
No 47
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.88 E-value=3.1e-07 Score=95.11 Aligned_cols=176 Identities=21% Similarity=0.286 Sum_probs=103.0
Q ss_pred CCCCcccchhhHHH---HHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRVE---EIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~---~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
....+|+|.+..+. .|.+.+. ....+.|+|++|+||||||+.+++.....|. .+. .. ..+...+ +
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-a~-----~~~i~di-r 94 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-AV-----LAGVKDL-R 94 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-hh-----hhhhHHH-H
Confidence 44467899999884 4666665 5567899999999999999999987754442 111 10 0111111 1
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE--EeCChh--hhhh-cCCC
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI--TTRNKQ--VLRN-CHIN 234 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii--TtR~~~--~~~~-~~~~ 234 (429)
..+.... ... ...+++.+|||||++.. .+.+.++..+. .+..++| ||.+.. +... .+..
T Consensus 95 ~~i~~a~----------~~l-~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~ 160 (725)
T PRK13341 95 AEVDRAK----------ERL-ERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRS 160 (725)
T ss_pred HHHHHHH----------HHh-hhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccc
Confidence 1111100 000 01235679999999744 45566665443 3444555 334331 1111 1234
Q ss_pred eEEEcCCCCHHHHHHHHHHhhhcC-----CCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 235 QIYEMKGLGDDHALELFIRHAFRQ-----NLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 235 ~~~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
..+.+++++.++...++.+.+... .....-..+....|++.+.|+.--+..+
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 578999999999999998765310 1111123567788999999986544443
No 48
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.4e-07 Score=89.75 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=114.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC----cceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN----FKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
.....++|-+...+.|...+. .++.+.|+|+.|+||||+|..+++.+... +......... +.-..
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~--------~~c~~ 91 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD--------PASPV 91 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC--------CCCHH
Confidence 566789999999999999988 34469999999999999999999987442 1100000000 00001
Q ss_pred HHHHHHH-------Hhc---CC----CCCCCHHH---HHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCC
Q 048064 160 QQKLLSE-------VLK---DV----NVIPHIDL---NFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPE 215 (429)
Q Consensus 160 ~~~l~~~-------~~~---~~----~~~~~~~~---l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~ 215 (429)
.+.+... +.. .. ...-.++. +.+.+ .++.-++|||+++.. ...+.++..+.....+
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 1111111 000 00 00011222 33333 245679999999844 4667777777765555
Q ss_pred CEEEEEe-CChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 216 SRILITT-RNKQVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 216 ~~iiiTt-R~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
..+|++| +...+++.+ +....+++.+++.++..+++........ -..+.+..+++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544 433333332 2346899999999999999987432111 113457789999999998665443
No 49
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.87 E-value=8.8e-08 Score=85.38 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=95.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcc-eeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFK-GSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
...+.|+|+.|+|||+|.+++++.+.+..+ ..+.+.+. ..+...+...+.. .....+...+.+-
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~~~~~~~~~-----~~~~~~~~~~~~~ 98 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIREFADALRD-----GEIEEFKDRLRSA 98 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHHHHHHHHHT-----TSHHHHHHHHCTS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHHHHHHHHHc-----ccchhhhhhhhcC
Confidence 356899999999999999999998876443 23333222 2222233332222 2334455556533
Q ss_pred cEEEEecCCCCHH---HH-HHHhccCCC-CCCCCEEEEEeCCh---------hhhhhcCCCeEEEcCCCCHHHHHHHHHH
Q 048064 188 KVLIVLDDVTCLN---QI-ESLVGSLDR-LLPESRILITTRNK---------QVLRNCHINQIYEMKGLGDDHALELFIR 253 (429)
Q Consensus 188 ~~LlVlDdv~~~~---~~-~~l~~~l~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~ 253 (429)
=+|+|||++... .+ +.+...+.. ...|.++|+|+... .+...+...-.+++.+++.++..+++.+
T Consensus 99 -DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 99 -DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp -SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred -CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 388999997442 22 222222221 13577899999543 2223334567899999999999999998
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHh
Q 048064 254 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCY 289 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 289 (429)
.+...... -..+++.-|++.+.+..-.|..+-..
T Consensus 178 ~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 178 KAKERGIE--LPEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 87544322 23467777888888777766555443
No 50
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=1.9e-07 Score=93.29 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=113.1
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC---------------------cceeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN---------------------FKGSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~ 142 (429)
....++||-+..++.|.+++. -.+.+.++|++|+||||+|+.+++.+-.. ++..+.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 445789999999999999997 34557899999999999999999975321 111111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+.... ...+..+ +.++..+... -..++.-++|||+++.. ...+.++..+....+.+.+|+
T Consensus 93 idaas-----~~~v~~i-R~l~~~~~~~------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 93 VDAAS-----RTKVEDT-RELLDNIPYA------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred Ecccc-----cCCHHHH-HHHHHHHhhc------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 11000 1112211 1222211110 01245568999999854 567788888777667777776
Q ss_pred EeCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 221 TTRNK-QVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 221 TtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
+|.+. .+...+ +....+++.+++.++....+...+-...... ..+.+..|++.++|.+.-+..+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 55443 333222 2345688999999998888777664333221 2356778999999988655443
No 51
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1.5e-07 Score=95.31 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=112.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcce---eEEEe-echhhhhh-cCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKG---SCFLE-NIREESQK-AGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~-~~~~~~~~-~~~~~~ 158 (429)
....+++|.+..++.|.+++. -.+.+.++|++|+||||+|+.+++.+-..... .|-.+ .+...... ..++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl- 91 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL- 91 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE-
Confidence 445789999999999999987 24568999999999999999999875321100 00000 00000000 00000
Q ss_pred HHHHHHHHHh-cCCCCCCCHHHHHHH-----hcCCcEEEEecCCCCHH--HHHHHhccCCCCCCCCEEEEEeCCh-hhhh
Q 048064 159 LQQKLLSEVL-KDVNVIPHIDLNFRR-----LSCRKVLIVLDDVTCLN--QIESLVGSLDRLLPESRILITTRNK-QVLR 229 (429)
Q Consensus 159 ~~~~l~~~~~-~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~ 229 (429)
.+. ......+.+..+... ..+++-++|||+++... ....|+..+......+.+|++|.+. .+..
T Consensus 92 -------EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 92 -------EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred -------EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 000 000001111111111 12456699999998554 4666777776555667777766544 2222
Q ss_pred h-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 230 N-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 230 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
. .+....+++.+++.++....+.+.+-..... -..+.+..|++.++|.+.-+..+.
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2 1233567889999999999998877443322 124568899999999996554443
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=4.3e-07 Score=92.03 Aligned_cols=190 Identities=16% Similarity=0.168 Sum_probs=113.0
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEeechhhhhhcCCHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLENIREESQKAGGLAFLQ 160 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
....++||-+..++.|.+++. -.+.+.++|+.|+||||+|+.+++.+-..-+ ...-...++.. ...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C--------~~C 84 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC--------QAC 84 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc--------HHH
Confidence 445789999999999999987 3456799999999999999999887532100 00000000000 000
Q ss_pred HHHHHHHh-----cCCCCCCCHHH---HHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-
Q 048064 161 QKLLSEVL-----KDVNVIPHIDL---NFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN- 224 (429)
Q Consensus 161 ~~l~~~~~-----~~~~~~~~~~~---l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~- 224 (429)
+.+..... ........++. +.+.. .++.-++|||+++.. ...+.++..+........+|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 00000000 00000011222 22221 234458999999854 5677888888776666676665543
Q ss_pred hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 225 KQVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 225 ~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
..+... ......+++.+++.++....+.+.+...+..- ..+.+..|++.++|.+.-+..+
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 333322 23457899999999999999988764433221 2456788999999988655443
No 53
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.86 E-value=2.3e-07 Score=89.59 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=113.4
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC----c-----------------ceeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN----F-----------------KGSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----f-----------------~~~~~ 142 (429)
..-..++|.+..++.|.+.+. -.+.+.++|++|+||||+|+.++..+... + .....
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 445688999999999999887 23567899999999999999999876422 1 01111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+... . ..... ..+.+...+... -..+++-++|+|+++.. .....++..+....+.+.+|+
T Consensus 91 ~~~~-~----~~~~~-~~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 91 IDAA-S----NNGVD-DIREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eecc-c----cCCHH-HHHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 1100 0 00111 011121111100 01234558999999755 456777777765556666666
Q ss_pred EeCChh-hhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 221 TTRNKQ-VLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 221 TtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
+|.+.. +...+ .....+++.+++.++..+++...+-..... -..+.+..+++.++|.|..+.....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHHHH
Confidence 665543 33222 234578899999999999998876443321 1246788899999999977655443
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=8.4e-07 Score=87.79 Aligned_cols=182 Identities=20% Similarity=0.230 Sum_probs=109.5
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcCc---------------------ceeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNF---------------------KGSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~ 142 (429)
..-.+++|.+...+.|...+.. ++.+.++|++|+||||+|+.+++.+...- .....
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 4457899999999999888872 34579999999999999999998753210 00111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+. ... ..+...+ +.+...... .-..+++-++|+|+++.. ...+.++..+....+...+|+
T Consensus 91 l~-aa~----~~gid~i-R~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 91 LD-AAS----NRGIDEI-RKIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred Ee-Ccc----cCCHHHH-HHHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 11 000 1111111 111111100 002245679999999855 356677777665444555554
Q ss_pred EeCC-hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHH
Q 048064 221 TTRN-KQVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKILGC 288 (429)
Q Consensus 221 TtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~ 288 (429)
+|.+ ..+... ......+++.+++.++....+...+...... -..+.+..|++.++|. +.++..+-.
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444 333322 2345688999999999999998876443321 1245678899888765 556555544
No 55
>PRK09087 hypothetical protein; Validated
Probab=98.85 E-value=1.8e-07 Score=83.77 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
..+.+.|+|++|+|||+|++.++.... ..++. .. .+...+... +.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-~~----------~~~~~~~~~-----------------~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-PN----------EIGSDAANA-----------------AAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-HH----------HcchHHHHh-----------------hhc-
Confidence 456799999999999999999887642 22332 10 111111111 111
Q ss_pred cEEEEecCCCCHH-HHHHHhccCCC-CCCCCEEEEEeCCh---------hhhhhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 048064 188 KVLIVLDDVTCLN-QIESLVGSLDR-LLPESRILITTRNK---------QVLRNCHINQIYEMKGLGDDHALELFIRHAF 256 (429)
Q Consensus 188 ~~LlVlDdv~~~~-~~~~l~~~l~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 256 (429)
-+|+|||++... .-+.+...+.. ...|..+|+|++.. .+...+....++++++++.++-.+++.+.+-
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889996431 11223222221 13467789888742 3344445567899999999999999998874
Q ss_pred cCCCCChhHHHHHHHHHHHhCCChHHHHHHHHh
Q 048064 257 RQNLVDVDYKELSDKVINYAQGVPLALKILGCY 289 (429)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 289 (429)
..... -.+++..-|++.+.|..-.+..+...
T Consensus 168 ~~~~~--l~~ev~~~La~~~~r~~~~l~~~l~~ 198 (226)
T PRK09087 168 DRQLY--VDPHVVYYLVSRMERSLFAAQTIVDR 198 (226)
T ss_pred HcCCC--CCHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 43211 22567888899998888777654433
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.84 E-value=3.3e-07 Score=81.61 Aligned_cols=257 Identities=18% Similarity=0.222 Sum_probs=149.4
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
..-.+|+|.++..++|.-++. ..-.+.++||+|.||||||.-+++.+..++. +... ..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsG-p~---------- 87 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSG-PA---------- 87 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----eccc-cc----------
Confidence 445789999999988887775 4567999999999999999999998865432 1100 00
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-HHHHHh-ccCCCC--------CCCCE-----------E
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-QIESLV-GSLDRL--------LPESR-----------I 218 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~l~-~~l~~~--------~~~~~-----------i 218 (429)
.....++..+...+. ..=+|++|+++... ..++++ +...++ +++++ |
T Consensus 88 -----------leK~gDlaaiLt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 88 -----------LEKPGDLAAILTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred -----------ccChhhHHHHHhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 000111111222233 23477889998553 222222 211111 23333 3
Q ss_pred EEEeCChhhhhhcC--CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHH
Q 048064 219 LITTRNKQVLRNCH--INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKE 296 (429)
Q Consensus 219 iiTtR~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~ 296 (429)
=.|||...+...+. ..-+.+++-.+.+|-.+++.+.+..-. .. -..+.+.+|++++.|-|.-..-+-+..+.
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~-i~~~~a~eIA~rSRGTPRIAnRLLrRVRD---- 229 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IE-IDEEAALEIARRSRGTPRIANRLLRRVRD---- 229 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CC-CChHHHHHHHHhccCCcHHHHHHHHHHHH----
Confidence 34888764433321 244678999999999999988762211 11 22467889999999999765544444322
Q ss_pred HHHHHHHHHhhCCCc----cHHHHHHHhhhcCChhhHHHHhhhhccc--CCcCHHHHHHHHHHcCCChhhhHH-HHHHcC
Q 048064 297 VWENAIKKLKNFLHQ----NILDVLKISYDDLDNDEKNIFLDVACFF--KGEDIYLVKKFFEASGFYPEIGIS-ILVDKA 369 (429)
Q Consensus 297 ~~~~~l~~l~~~~~~----~i~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~s 369 (429)
+..+... ...+. .....|..-=..|+.-.++.|..+.-.+ .++..+.+...++.+....++.++ -|++.|
T Consensus 230 -fa~V~~~--~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~g 306 (332)
T COG2255 230 -FAQVKGD--GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQG 306 (332)
T ss_pred -HHHHhcC--CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhc
Confidence 1000000 00011 1112222222356666666666665544 457778777776554433444443 589999
Q ss_pred ceeEccCCeE
Q 048064 370 LIAINSYNKI 379 (429)
Q Consensus 370 Li~~~~~~~~ 379 (429)
+++....|+.
T Consensus 307 fi~RTpRGR~ 316 (332)
T COG2255 307 FIQRTPRGRI 316 (332)
T ss_pred hhhhCCCcce
Confidence 9999888874
No 57
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=4.5e-07 Score=95.11 Aligned_cols=188 Identities=13% Similarity=0.099 Sum_probs=111.9
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEe-echhhhhh---cCCH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLE-NIREESQK---AGGL 156 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~~---~~~~ 156 (429)
....++||.+..++.|..++. -.+.+.++|+.|+||||+|+.+++.+..... ..|-.+ .+...... ..++
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 445689999999999999987 3456889999999999999999997632100 000000 00000000 0000
Q ss_pred HHHHHHHHHHHhc-CCCCCCCHHHHHHH-----hcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeC-Chhh
Q 048064 157 AFLQQKLLSEVLK-DVNVIPHIDLNFRR-----LSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTR-NKQV 227 (429)
Q Consensus 157 ~~~~~~l~~~~~~-~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR-~~~~ 227 (429)
.. +.. ....++.+..+.+. ..++.-++|||+++.. ...+.|+..+......+.+|++|. ...+
T Consensus 92 ~e--------idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 92 TE--------IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred EE--------ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 00 000 00001111112111 2345568999999855 567788888877667777665554 3444
Q ss_pred hhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 048064 228 LRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 284 (429)
Q Consensus 228 ~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 284 (429)
...+ .....|++.+++.++...++.+.+-..... -..+.+..|++.++|.+..+.
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 4432 345789999999999999988765333321 123557789999999885443
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.3e-07 Score=89.56 Aligned_cols=168 Identities=18% Similarity=0.199 Sum_probs=106.5
Q ss_pred CcccchhhHHHHHHHhhcC------------CCEEEEEcCCCcchHHHHHHHHHHhhcCc--------------------
Q 048064 90 NELVGVESRVEEIQSLLGA------------APLLGIWGIGGIGKTTIARVIFNRISRNF-------------------- 137 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~------------~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-------------------- 137 (429)
.+++|.+..++.|.+.+.. .+.+.++|++|+|||++|..++..+-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 5688999999988888862 34588999999999999999998653221
Q ss_pred ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCC
Q 048064 138 KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLD 210 (429)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~ 210 (429)
+...++.. ... ..... .+..+.+.+ .+++-++|||+++.. ...+.|+..+.
T Consensus 85 pD~~~i~~-~~~---~i~i~------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDVRVVAP-EGL---SIGVD------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCEEEecc-ccc---cCCHH------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 11111110 000 01111 111122222 234558889999844 45567777777
Q ss_pred CCCCCCEEEEEeCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 211 RLLPESRILITTRNK-QVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 211 ~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
...++..+|++|.+. .+.+.+ +....+.+.+++.++..+++..... .+ .+.+..++..++|.|.....+
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 666677666666554 344332 3457899999999999998875421 11 345778899999999755443
No 59
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=6.3e-07 Score=90.49 Aligned_cols=189 Identities=18% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcCc-c--eeEEEe-echhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNF-K--GSCFLE-NIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~--~~~~~~-~~~~~~~~~~~~~~~ 159 (429)
....+++|.+..++.|.+++.. .+.+.++|+.|+||||+|+.+++.+.... + ..|-.+ .+........+...+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 4457899999999999999872 34578999999999999999998764211 0 000000 000000000000000
Q ss_pred HHHHHHHHhc-CCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CChhhhhh
Q 048064 160 QQKLLSEVLK-DVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RNKQVLRN 230 (429)
Q Consensus 160 ~~~l~~~~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~~~~~~ 230 (429)
. .+.. .....+.+..+...+ .++.-++|||+++.. ...+.|+..+........+|++| ....+...
T Consensus 90 ----i-eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 90 ----V-ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred ----E-EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHH
Confidence 0 0000 000111111121111 245569999999844 56778888887766666666544 44444433
Q ss_pred -cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHH
Q 048064 231 -CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLA 282 (429)
Q Consensus 231 -~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 282 (429)
.+....+++.+++.++..+++...+...... -..+.+..|++.++|.+..
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR~ 215 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPRD 215 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 2345789999999999999988766443321 1235677889999998853
No 60
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.78 E-value=2.3e-07 Score=91.50 Aligned_cols=166 Identities=17% Similarity=0.220 Sum_probs=100.1
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcc-e-eEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFK-G-SCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
..+.|+|+.|+|||+|++.+++.+....+ . ++++. . ..+...+...+.... .....+...+++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~----------~~f~~~~~~~l~~~~---~~~~~~~~~~~~- 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-G----------DEFARKAVDILQKTH---KEIEQFKNEICQ- 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H----------HHHHHHHHHHHHHhh---hHHHHHHHHhcc-
Confidence 56899999999999999999997754322 2 23332 1 223333333332210 122334444443
Q ss_pred cEEEEecCCCCHH----HHHHHhccCCC-CCCCCEEEEEeCCh-hh--------hhhcCCCeEEEcCCCCHHHHHHHHHH
Q 048064 188 KVLIVLDDVTCLN----QIESLVGSLDR-LLPESRILITTRNK-QV--------LRNCHINQIYEMKGLGDDHALELFIR 253 (429)
Q Consensus 188 ~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~-~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~ 253 (429)
.-+|||||++... ..+.+...+.. ...+..||+|+... .. ...+...-++.+.+++.++..+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3488899996432 22333333221 13455688887543 22 22233456788999999999999998
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 254 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
.+-.......-..+.+.-|++.+.|.|-.+..+...+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 8743321112335788999999999998887665443
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.78 E-value=5.8e-08 Score=89.02 Aligned_cols=173 Identities=19% Similarity=0.321 Sum_probs=103.0
Q ss_pred CCCCcccchhhHHHH---HHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRVEE---IQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~---l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
..-.++||.+..+.+ |..++. ..+.+.+||++|+||||||+.++...+.+- ..|+. ++.......++.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR---- 207 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVR---- 207 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHH----
Confidence 344677777766654 222333 677899999999999999999998765542 23333 221111122222
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE--EeCChhh---hhhcCCC
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI--TTRNKQV---LRNCHIN 234 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii--TtR~~~~---~~~~~~~ 234 (429)
.+..+..+. ..+..++.+|++|+++.. .+.+.|++.. ..|..++| ||.++.. ...+...
T Consensus 208 ~ife~aq~~-----------~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 208 DIFEQAQNE-----------KSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred HHHHHHHHH-----------HhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhcc
Confidence 233222221 234568899999999744 3555555543 45777676 7776633 2223456
Q ss_pred eEEEcCCCCHHHHHHHHHHhhh---cCC---CCCh-----hHHHHHHHHHHHhCCCh
Q 048064 235 QIYEMKGLGDDHALELFIRHAF---RQN---LVDV-----DYKELSDKVINYAQGVP 280 (429)
Q Consensus 235 ~~~~l~~L~~~ea~~L~~~~~~---~~~---~~~~-----~~~~~~~~i~~~~~G~P 280 (429)
.++.|++|+.++...++.+... ... .+-+ -...+.+-++..|+|-.
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 7889999999999998876321 111 1111 12345566667777754
No 62
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.78 E-value=2.7e-07 Score=89.61 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=95.9
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
...+.|++..++++.+.+. .++.|.++|++|+|||++|+.+++.....|- ...........
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i----~v~~~~l~~~~ 205 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI----RVVGSELVQKF 205 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE----EeehHHHhHhh
Confidence 3567899999999988763 3567999999999999999999998653321 11111110000
Q ss_pred -CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------------H---HHHHhccCCCC--CC
Q 048064 154 -GGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------------Q---IESLVGSLDRL--LP 214 (429)
Q Consensus 154 -~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~---~~~l~~~l~~~--~~ 214 (429)
.......+.+ +...-...+.+|+|||++... . +..++..+... ..
T Consensus 206 ~g~~~~~i~~~----------------f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 206 IGEGARLVREL----------------FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred ccchHHHHHHH----------------HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 0001111111 111123457899999997541 1 22222222221 23
Q ss_pred CCEEEEEeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 048064 215 ESRILITTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV 279 (429)
Q Consensus 215 ~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 279 (429)
+..||.||.....+.. + .....+.+++.+.++..++|..+........ . -....++..+.|.
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~--~~~~~la~~t~g~ 336 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-D--VDLEELAELTEGA 336 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-c--CCHHHHHHHcCCC
Confidence 4556767765433221 1 2346789999999999999988764332221 1 1145566666664
No 63
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.77 E-value=2.3e-07 Score=85.36 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSC 186 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (429)
...+.++|++|+||||+|+.+++.+.... ....++. +.... +. ...... .......+.....
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~~~--------l~----~~~~g~--~~~~~~~~~~~a~- 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VERAD--------LV----GEYIGH--TAQKTREVIKKAL- 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecHHH--------hh----hhhccc--hHHHHHHHHHhcc-
Confidence 34688999999999999999998764321 1111221 11110 00 000000 0001111222222
Q ss_pred CcEEEEecCCCCH----------HHHHHHhccCCCCCCCCEEEEEeCChhhh------hhc--CCCeEEEcCCCCHHHHH
Q 048064 187 RKVLIVLDDVTCL----------NQIESLVGSLDRLLPESRILITTRNKQVL------RNC--HINQIYEMKGLGDDHAL 248 (429)
Q Consensus 187 ~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~------~~~--~~~~~~~l~~L~~~ea~ 248 (429)
.-+|+||+++.. +.++.++..+........+|+++.....- +.+ .....+.+++++.+|..
T Consensus 106 -~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 106 -GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred -CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 348999999752 24555665555433444555555432210 011 12356889999999999
Q ss_pred HHHHHhhhc
Q 048064 249 ELFIRHAFR 257 (429)
Q Consensus 249 ~L~~~~~~~ 257 (429)
+++.+.+..
T Consensus 185 ~Il~~~~~~ 193 (261)
T TIGR02881 185 EIAERMVKE 193 (261)
T ss_pred HHHHHHHHH
Confidence 999877643
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.77 E-value=5.2e-07 Score=78.73 Aligned_cols=148 Identities=16% Similarity=0.255 Sum_probs=91.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC---------------------cceeEEEeechhhhhhcCCHHHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN---------------------FKGSCFLENIREESQKAGGLAFLQQKLLSEV 167 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (429)
.+.+.++|+.|+|||++|..+++.+... ++...++..... ..... ..+.+...+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~----~~~~~-~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ----SIKVD-QVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC----cCCHH-HHHHHHHHH
Confidence 4678999999999999999999986432 111111110000 01111 111111111
Q ss_pred hcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhc-CCCeEEEcCCCC
Q 048064 168 LKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRNC-HINQIYEMKGLG 243 (429)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~ 243 (429)
... -..+.+-++|+||++.. ...+.++..+....+.+.+|++|++. .+.+.+ .....+.+.+++
T Consensus 89 ~~~------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 89 SRT------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred ccC------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 110 01235568999999754 45677777777656667777766654 222222 234689999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 048064 244 DDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL 281 (429)
Q Consensus 244 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 281 (429)
.++..+++.+.. .+ .+.+..+++.++|.|.
T Consensus 157 ~~~~~~~l~~~g-----i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 157 EEALLQWLIRQG-----IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHHHHHcC-----CC---HHHHHHHHHHcCCCcc
Confidence 999999998771 11 3568899999999985
No 65
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.76 E-value=7.1e-08 Score=80.09 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=69.0
Q ss_pred cchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC
Q 048064 93 VGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD 170 (429)
Q Consensus 93 vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (429)
+|++..++.+...+. ..+.+.|+|++|+|||++++.+++.+.......+++ +...... ...........
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~-~~~~~~~----~~~~~~~~~~~---- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL-NASDLLE----GLVVAELFGHF---- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE-ehhhhhh----hhHHHHHhhhh----
Confidence 478888999988887 478999999999999999999999875433333333 2322111 00000000000
Q ss_pred CCCCCCHHHHHHHhcCCcEEEEecCCCCH--HH---HHHHhccCCCC---CCCCEEEEEeCCh
Q 048064 171 VNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQ---IESLVGSLDRL---LPESRILITTRNK 225 (429)
Q Consensus 171 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~---~~~l~~~l~~~---~~~~~iiiTtR~~ 225 (429)
............++.+||+||++.. .. +...+...... ..+..+|+||...
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0000011223346789999999854 22 22333332221 3567788888765
No 66
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=7.4e-07 Score=90.46 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=116.1
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcce---eEEEeechhhhhhcCCHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKG---SCFLENIREESQKAGGLAFLQ 160 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 160 (429)
....+++|.+..++.|.+.+. -.+.+.++|+.|+||||+|+.+++.+...... ..-+..+... ...
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c--------~~C 92 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG--------EHC 92 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc--------HHH
Confidence 455789999999999999987 34578999999999999999999976422110 0000000000 000
Q ss_pred HHHHHHHhc--------CCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CC
Q 048064 161 QKLLSEVLK--------DVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RN 224 (429)
Q Consensus 161 ~~l~~~~~~--------~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~ 224 (429)
+.+...... ....++.+..+...+ .+++-++|+|+++.. ...+.|+..+....+++.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 111110000 000111112222222 234558999999755 45778888877766777766544 44
Q ss_pred hhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 225 KQVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 225 ~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
..+...+ .....+++.+++.++....+.+.+...... -..+.+..|++.++|.+.-+....
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4443332 235678999999999999998876443322 123668889999999987664443
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=4.1e-07 Score=91.16 Aligned_cols=187 Identities=17% Similarity=0.151 Sum_probs=109.6
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
....+++|++..++.|.+.+. ..+.+.++|++|+||||+|+.+++.+...-....-. +.... ..+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~--Cg~C~--------sCr~i 82 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC--CNSCS--------VCESI 82 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--CcccH--------HHHHH
Confidence 455789999999999999886 356789999999999999999999763211000000 00000 00000
Q ss_pred HHHHhcC--------CCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-hhh
Q 048064 164 LSEVLKD--------VNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN-KQV 227 (429)
Q Consensus 164 ~~~~~~~--------~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~ 227 (429)
....... ....+.+..+.... .+++-++|+|+++.. .....|+..+....+...+|++|.. ..+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 0000000 00001111111111 123447999999854 4667777777665556666555543 333
Q ss_pred hhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 228 LRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 228 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
... ......+++.+++.++....+...+...... -..+.+..+++.++|.+.-+..
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~Aln 219 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLS 219 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 322 2335678999999999999998876443311 1135678899999998764433
No 68
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=4.8e-07 Score=88.29 Aligned_cols=194 Identities=15% Similarity=0.158 Sum_probs=112.1
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcC--cceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRN--FKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
....+++|.+..++.|..++.. .+.+.++|++|+||||+|..+++.+... +...-|......... .. ...+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~---~c-~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG---EC-ESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC---CC-HHHH
Confidence 4557899999999999998873 3458899999999999999999976431 000000000000000 00 0000
Q ss_pred HHHHHH-------hc-CCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CCh
Q 048064 162 KLLSEV-------LK-DVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RNK 225 (429)
Q Consensus 162 ~l~~~~-------~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~ 225 (429)
.+.... .. .....+.+..+.+.+ .+.+-++|+|+++.. ..++.++..+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000000 00 000011122222333 234568999999854 46777887777656666666554 433
Q ss_pred hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 226 QVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 226 ~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
.+...+ .....+++.+++.++....+...+-..... -..+.+..+++.++|.+.-+...
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 443322 123568899999999999988776332211 22467889999999988655443
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.75 E-value=4e-08 Score=85.44 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=34.7
Q ss_pred cccchhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 91 ELVGVESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.|+||+.+++++...+. ..+.+.|+|++|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999993 67899999999999999999999988776
No 70
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.7e-07 Score=92.78 Aligned_cols=177 Identities=16% Similarity=0.170 Sum_probs=109.4
Q ss_pred CCCCcccchhhHHHHHHHhhc--C-CCEEEEEcCCCcchHHHHHHHHHHhhcCcc---------------------eeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLG--A-APLLGIWGIGGIGKTTIARVIFNRISRNFK---------------------GSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~ 142 (429)
....+++|-+..++.|.+++. . .+.+.++|++|+||||+|+.+++.+-.... ..+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 445689999999999999887 2 345789999999999999999987632110 0111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+. ... ...... .+.++...... -..+++-++|+|+++.. ...+.++..+......+.+|+
T Consensus 93 i~-~~~----~~~vd~-ir~l~~~~~~~------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 93 VD-AAS----NTQVDA-MRELLDNAQYA------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred ee-ccc----cCCHHH-HHHHHHHHhhC------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 10 000 011111 11111111000 01245679999999855 457778888776566666666
Q ss_pred EeCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 048064 221 TTRNK-QVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 283 (429)
Q Consensus 221 TtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 283 (429)
+|.+. .+... .+....+++.+++.++....+.+.+...... ...+.+..|++.++|.+.-+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 55443 33322 1224578899999999998888766433321 12456788999999988644
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.4e-06 Score=82.79 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=110.0
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC--------cceeEEEeechhhhhhcCC
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN--------FKGSCFLENIREESQKAGG 155 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~ 155 (429)
..-.+++|.+..++.+.+.+. -.+.+.++|++|+||||+|..+++.+... |...++-. .... ...
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~~--~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAAS--NNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cccc--CCC
Confidence 455789999999999999987 34578899999999999999998876431 11111111 0000 111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeC-Chhhhhh-c
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTR-NKQVLRN-C 231 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR-~~~~~~~-~ 231 (429)
...+ +.+....... -..+++-++|+|+++.. ..++.++..+....+.+.+|+++. ...+... .
T Consensus 90 ~~~i-~~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 90 VDDI-RNLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHH-HHHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1111 1122111100 01234558999999744 346667666655444555555553 3333222 2
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 232 HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 232 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
.....+++.+++.++...++...+...... -..+.+..+++.++|.+-.+...
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~~~~ 209 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDALSI 209 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHHHHH
Confidence 234578999999999999998876443321 12467888999999987655433
No 72
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=6.8e-07 Score=84.87 Aligned_cols=199 Identities=15% Similarity=0.176 Sum_probs=116.4
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcce-eEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKG-SCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~ 159 (429)
..+..++||+.++..+..++. ..+.+-|.|.+|.|||.+...++.+....... .....++.. -.....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHH
Confidence 446789999999999999986 67789999999999999999999987666544 222222322 1233444
Q ss_pred HHHHHHHH----hcCCCCCCCHHHHHHHhcC--CcEEEEecCCCCHHHH--HHHhccCCCC-CCCCEEEEEeCC------
Q 048064 160 QQKLLSEV----LKDVNVIPHIDLNFRRLSC--RKVLIVLDDVTCLNQI--ESLVGSLDRL-LPESRILITTRN------ 224 (429)
Q Consensus 160 ~~~l~~~~----~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~--~~l~~~l~~~-~~~~~iiiTtR~------ 224 (429)
...+...+ ............+.....+ ..+|+|+|++|....- ..+...+.|. -+++++|+..-.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 44554444 2222222222334444443 3689999999865421 1111122211 356665442211
Q ss_pred hhhhhhcC-----CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 225 KQVLRNCH-----INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 225 ~~~~~~~~-----~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
+..+..+. .-..+..+|.+.++..++|..+..... ........++.++.++.|.---+..+-...
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~-t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES-TSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc-ccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 12222222 235678999999999999999874332 222233455556666666554444444433
No 73
>PRK06620 hypothetical protein; Validated
Probab=98.72 E-value=3.1e-07 Score=81.49 Aligned_cols=137 Identities=12% Similarity=0.114 Sum_probs=82.9
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcE
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKV 189 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 189 (429)
+.+.|+|++|+|||+|++.+++.... .+..... .. .. ..+ ..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~------~~-----~~--------------------~~~-~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF------FN-----EE--------------------ILE-KYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh------hc-----hh--------------------HHh-cCC
Confidence 66999999999999999987775421 2221000 00 00 011 224
Q ss_pred EEEecCCCCHHH--HHHHhccCCCCCCCCEEEEEeCChh-------hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCC
Q 048064 190 LIVLDDVTCLNQ--IESLVGSLDRLLPESRILITTRNKQ-------VLRNCHINQIYEMKGLGDDHALELFIRHAFRQNL 260 (429)
Q Consensus 190 LlVlDdv~~~~~--~~~l~~~l~~~~~~~~iiiTtR~~~-------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 260 (429)
+|++||++..+. +-.+...+. ..|..||+|++... +...+....++++++++.++...++.+.+.....
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l 165 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSV 165 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC
Confidence 788999985432 222222222 34667888887542 2233344568999999999988888877643221
Q ss_pred CChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 261 VDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 261 ~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
. -.+++.+-|++.+.|.--.+.-+-
T Consensus 166 ~--l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 166 T--ISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred C--CCHHHHHHHHHHccCCHHHHHHHH
Confidence 1 224677888888888766654443
No 74
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=4.6e-06 Score=83.02 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=111.2
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC-----cceeEEEeechhhhhh-cCCHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN-----FKGSCFLENIREESQK-AGGLA 157 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~-~~~~~ 157 (429)
.....++|.+..++.|.+++. -.+.+.++|++|+||||+|+.++..+... .++.. ..++...... ..++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPDLI 91 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCcEE
Confidence 445789999999999999997 23456789999999999999999876321 01100 0000000000 00000
Q ss_pred HHHHHHHHHHhc-CCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CChhhh
Q 048064 158 FLQQKLLSEVLK-DVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RNKQVL 228 (429)
Q Consensus 158 ~~~~~l~~~~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~~~~ 228 (429)
. +.. .....+.+..+.... .+++-++|+|+++.. ...+.++..+....+...+|++| +...+.
T Consensus 92 e--------idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 92 E--------IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred E--------EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 0 000 000011111122222 245569999999854 45677777777655555555544 433333
Q ss_pred hh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 229 RN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 229 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
.. ......+++.+++.++....+...+-..... -..+.+..+++.++|.+..+....
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 2234678999999999999988876443321 124567889999999887655444
No 75
>PTZ00202 tuzin; Provisional
Probab=98.71 E-value=5.4e-06 Score=79.11 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=97.7
Q ss_pred CCCCcccchhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
.....|+||+.++.+|...|. .++++.|.|++|+|||||++.+..... ...++.|.. +...+..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHHH
Confidence 667899999999999999986 456889999999999999999997653 234554443 4577888
Q ss_pred HHHHHHhcCCCCC--CCHHHHHHH-----hc-CCcEEEEecCC--CCHHH-HHHHhccCCCCCCCCEEEEEeCChhhhh-
Q 048064 162 KLLSEVLKDVNVI--PHIDLNFRR-----LS-CRKVLIVLDDV--TCLNQ-IESLVGSLDRLLPESRILITTRNKQVLR- 229 (429)
Q Consensus 162 ~l~~~~~~~~~~~--~~~~~l~~~-----l~-~~~~LlVlDdv--~~~~~-~~~l~~~l~~~~~~~~iiiTtR~~~~~~- 229 (429)
.++..++...... +.++.+.+. .. +++.+|||-=- .+..- ..+.. .|..-..-|+|++---.+.+-.
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchh
Confidence 8888887532111 111222221 22 56667766322 23321 11111 1111145677877554432211
Q ss_pred --hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 230 --NCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 230 --~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
.+..-..|.+++++.++|.++.+...
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11234678899999999998876654
No 76
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=1e-06 Score=90.19 Aligned_cols=191 Identities=16% Similarity=0.161 Sum_probs=112.9
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
....+++|.+..++.|..++.. .+.+.++|+.|+||||+|+.+++.+.......-. ..+.. -...+.+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~-~~c~~--------c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG-RPCGT--------CEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CCCcc--------CHHHHHH
Confidence 4457899999999999998872 3456899999999999999999876321110000 00000 0001111
Q ss_pred HHHHhcC----C-CCCCCHH---HHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-hhh
Q 048064 164 LSEVLKD----V-NVIPHID---LNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN-KQV 227 (429)
Q Consensus 164 ~~~~~~~----~-~~~~~~~---~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~ 227 (429)
....... . .....++ .+...+ .+.+-++|||+++.. ...+.|+..+....+...+|+++.+ ..+
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 1000000 0 0001111 122221 134568999999744 5577777777665566666665543 333
Q ss_pred hhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 228 LRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 228 ~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
...+ .....+.+.+++.++....+...+...... -..+.+..+++.++|.+..+.....
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3322 234578899999999999988776443321 1245688899999999976655443
No 77
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=4.6e-06 Score=83.14 Aligned_cols=184 Identities=16% Similarity=0.200 Sum_probs=113.5
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhc-Ccce--eEEEe---------------e
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISR-NFKG--SCFLE---------------N 145 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~--~~~~~---------------~ 145 (429)
..-.+++|-+...+.|...+. -.+...++|+.|+||||+|+.+++.+-. .... .|..+ .
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 445789999999999999987 2345689999999999999999987632 1110 00000 0
Q ss_pred chhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeC
Q 048064 146 IREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTR 223 (429)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR 223 (429)
....+ ..+...+.. +....... -..+++-++|||+++.. +..+.|+..+....+.+.+|++|.
T Consensus 91 ldaas--~~gId~IRe-lie~~~~~------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 91 MDAAS--NRGIDDIRE-LIEQTKYK------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred ecccc--ccCHHHHHH-HHHHHhhC------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 00000 011111111 11110000 01134568999999844 467778887776667777777665
Q ss_pred Ch-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 224 NK-QVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 224 ~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
+. .+... ......+++.+++.++....+...+...... -..+.+..|++.++|.+.-+..+.
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 54 22222 2235689999999999999998776443322 124678899999999996654443
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=2.5e-06 Score=86.01 Aligned_cols=183 Identities=16% Similarity=0.183 Sum_probs=112.6
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcCc---------------------ceeEE
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNF---------------------KGSCF 142 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~ 142 (429)
....+++|-+..++.|.+.+.. .+.+.++|+.|+||||+|+.+++.+-... ...++
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4456889999999999998872 46788999999999999999998763211 00111
Q ss_pred EeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE
Q 048064 143 LENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii 220 (429)
+. ... ...+..+ +.+...+.. .-..+++-++|||+++.. ...+.|+..+........+|+
T Consensus 93 Id-~a~----~~~Id~i-R~L~~~~~~------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 93 ID-GAS----NRGIDDA-KRLKEAIGY------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred Ee-ccc----ccCHHHH-HHHHHHHHh------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEE
Confidence 10 000 0111111 111111100 012345679999999855 456777777765445566666
Q ss_pred EeCC-hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh-HHHHHHHHh
Q 048064 221 TTRN-KQVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP-LALKILGCY 289 (429)
Q Consensus 221 TtR~-~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~~~~ 289 (429)
+|.. ..+... ......+++.+++.++....+...+...... -..+.++.|++.++|.+ .++..+...
T Consensus 155 aTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 155 ATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred ecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5544 333322 2234578999999999999998766443321 12456888999999976 566665443
No 79
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.69 E-value=1.6e-07 Score=76.69 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCc----ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHH----HH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNF----KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHID----LN 180 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~l 180 (429)
.+.+.|+|++|+|||+++..+++...... ...+++.++.. ......+...+...+........... .+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS----SRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC----CCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 56799999999999999999999765431 23333333333 33678888888888877744422232 25
Q ss_pred HHHhcCCc-EEEEecCCCCH-H--HHHHHhccCCCCCCCCEEEEEeCC
Q 048064 181 FRRLSCRK-VLIVLDDVTCL-N--QIESLVGSLDRLLPESRILITTRN 224 (429)
Q Consensus 181 ~~~l~~~~-~LlVlDdv~~~-~--~~~~l~~~l~~~~~~~~iiiTtR~ 224 (429)
.+.+...+ .+|||||++.. . .++.+..... ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555544 59999999876 2 3333433223 567778777665
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.6e-06 Score=86.74 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=111.2
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
....+++|.+..++.|.+.+. -.+.+.++|++|+||||+|+.+++.+-..- ....|.......+. ... ..+
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg---~C~-sC~ 88 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG---ECE-SCR 88 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc---cCH-HHH
Confidence 455789999999999999886 245588999999999999999998763211 00001100000000 000 000
Q ss_pred HHHHH-------Hhc-CCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CCh
Q 048064 162 KLLSE-------VLK-DVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RNK 225 (429)
Q Consensus 162 ~l~~~-------~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~ 225 (429)
.+... +.. .....+.+..+.+.+ .+.+-++|+||++.. ...+.|+..+....+.+.+|++| +..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 00000 000 000011122222222 234558899999855 45777888877655566655544 434
Q ss_pred hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 048064 226 QVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 284 (429)
Q Consensus 226 ~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 284 (429)
.+... ......+++.+++.++....+.+.+...... -..+.+..+++.++|..--+.
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr~al 226 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMRDAQ 226 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHH
Confidence 44433 2346789999999999998887765432211 124568889999999776443
No 81
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=4.8e-06 Score=78.27 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=112.6
Q ss_pred CcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhc---------------CcceeEEEeechhhhh
Q 048064 90 NELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISR---------------NFKGSCFLENIREESQ 151 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------------~f~~~~~~~~~~~~~~ 151 (429)
.+++|.+...+.+.+.+. -.+...++|+.|+||+++|..+++.+-. .++...|+........
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 468999999999999987 2578999999999999999999987532 2233344431100000
Q ss_pred hcCCHHHHHHHHHHHHh--cCCCC---CCCHHHHHHHhc-----CCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEE
Q 048064 152 KAGGLAFLQQKLLSEVL--KDVNV---IPHIDLNFRRLS-----CRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRIL 219 (429)
Q Consensus 152 ~~~~~~~~~~~l~~~~~--~~~~~---~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~ii 219 (429)
.. . ........+ ..... ++.+..+.+.+. +.+-++|+|+++.. ...+.|+..+...+ .+.+|
T Consensus 84 -~~-~---~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 84 -KL-I---TASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred -cc-c---chhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00 0 000000110 00001 112223444333 35569999999744 56777888887655 55555
Q ss_pred E-EeCChhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 220 I-TTRNKQVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 220 i-TtR~~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
+ |+....+++.+ +....+++.+++.++..+.+....... .. ......++..++|.|.....+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-~~----~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-IL----NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-cc----hhHHHHHHHHcCCCHHHHHHHH
Confidence 4 44444444433 346789999999999999998764211 11 1113578899999997665443
No 82
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.67 E-value=4.7e-06 Score=75.19 Aligned_cols=179 Identities=20% Similarity=0.281 Sum_probs=113.4
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhc--CcceeEEEeechhhhhhcCCHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR--NFKGSCFLENIREESQKAGGLAFLQQK 162 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (429)
....+++|.+..++.|.+.+. ..+....|||+|.|||+.|..++..+-. -|++++.-.+.+.. .+.......
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde----rGisvvr~K 108 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE----RGISVVREK 108 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc----ccccchhhh
Confidence 556789999999999999887 6788999999999999999999987532 34544432222221 111100000
Q ss_pred HHHHHhcCCCCCCCHHHHHHHh------cCCc-EEEEecCCCCH--HHHHHHhccCCCCCCCCE-EEEEeCChhhhhh-c
Q 048064 163 LLSEVLKDVNVIPHIDLNFRRL------SCRK-VLIVLDDVTCL--NQIESLVGSLDRLLPESR-ILITTRNKQVLRN-C 231 (429)
Q Consensus 163 l~~~~~~~~~~~~~~~~l~~~l------~~~~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~-iiiTtR~~~~~~~-~ 231 (429)
+ .....+.... ...+ -++|||+++.. +.|..+...+..+....+ |+||+--..+... .
T Consensus 109 i-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 I-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred h-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0 0000010001 0122 58999999865 567778777776666666 4555544333222 1
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHH
Q 048064 232 HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLA 282 (429)
Q Consensus 232 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 282 (429)
+....++.++|..+....-++..+-.++..- ..+..+.|++.++|--.-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d~~al~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--DDDALKLIAKISDGDLRR 226 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH
Confidence 2345688999999999988888875544322 246788999999986443
No 83
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.66 E-value=7.7e-07 Score=93.57 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=88.4
Q ss_pred CCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhc---CCHH
Q 048064 89 KNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKA---GGLA 157 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~---~~~~ 157 (429)
-++++||+++++++.+.|. ...-+.++|++|+|||++|+.+++++.... ...+|..++....... ....
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 3579999999999999887 566788999999999999999999874431 2334443332211100 0111
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHH-----------HHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 158 FLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLN-----------QIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
.- +..+...+ ...+.+|+||+++... ..+.+.+.+.. ...++|-+|...
T Consensus 261 ~~-----------------l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~ 321 (731)
T TIGR02639 261 ER-----------------LKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYE 321 (731)
T ss_pred HH-----------------HHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHH
Confidence 11 11222222 2357899999997331 22333333331 223444444332
Q ss_pred hhh-------hhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 226 QVL-------RNCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 226 ~~~-------~~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
+.- ........+.+++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 110 111234578999999999999998654
No 84
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=9.3e-07 Score=90.46 Aligned_cols=188 Identities=14% Similarity=0.196 Sum_probs=110.9
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh---hcCCHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ---KAGGLAFLQ 160 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~~~~~~ 160 (429)
.....++|.+..++.|...+. -.+.+.++|++|+||||+|+.++..+-.......+- .+..+.. ...++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~~~~~~~~Dvi--- 90 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECIENVNNSLDII--- 90 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHHHhhcCCCcEE---
Confidence 445789999999999999987 355678999999999999999998753211100000 0000000 000000
Q ss_pred HHHHHHHhc-CCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEE-EeCChhhhhh-
Q 048064 161 QKLLSEVLK-DVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILI-TTRNKQVLRN- 230 (429)
Q Consensus 161 ~~l~~~~~~-~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iii-TtR~~~~~~~- 230 (429)
.+.. .......+..+...+ .+++-++|+|+++.. ..+..|+..+....+...+|+ |+....+...
T Consensus 91 -----eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 91 -----EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred -----EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 0000 000011122222222 245569999999844 467788877776555665554 4444444433
Q ss_pred cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 231 CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 231 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
......+++.+++.++....+...+...... ...+.+..++..++|.+.-+..
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 2335689999999999999988765333211 1235678899999998754433
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=1.5e-06 Score=85.86 Aligned_cols=189 Identities=19% Similarity=0.215 Sum_probs=110.2
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc----eeEEEe-echhhhhhc-CCHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK----GSCFLE-NIREESQKA-GGLA 157 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----~~~~~~-~~~~~~~~~-~~~~ 157 (429)
..-.+++|.+..++.|.+.+. -.+.+.++|++|+||||+|+.+++.+...-. ..|-.+ ++....... .++.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 455789999999999999987 2456889999999999999999987632200 000000 000000000 0000
Q ss_pred HHHHHHHHHHhc-CCCCCCCHHHHHHH-----hcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-hhhh
Q 048064 158 FLQQKLLSEVLK-DVNVIPHIDLNFRR-----LSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN-KQVL 228 (429)
Q Consensus 158 ~~~~~l~~~~~~-~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~ 228 (429)
.+.. .....+.+..+.+. ..+.+-++|+|+++.. ...+.|+..+....+...+|++|.. ..+.
T Consensus 94 --------~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 94 --------EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred --------EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 0000 00000111111111 1245678999999744 4566777777665556666665543 3333
Q ss_pred hh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 229 RN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 229 ~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
.. ......+++.+++.++....+...+-..... -..+.+..++..++|.+.-+..
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a~~ 221 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDAES 221 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 32 2235678999999999999888766433211 1245688899999998754433
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.62 E-value=1.1e-06 Score=86.55 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=96.1
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcc-eeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFK-GSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
..+.|+|++|+|||+|++.+++.+.+.++ ..+.+.+. ..+...+...+.. ...+.+...+....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~-----~~~~~f~~~~~~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKE-----GKLNEFREKYRKKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhc-----ccHHHHHHHHHhcC
Confidence 46999999999999999999998876543 23333222 1222333332221 12334444444455
Q ss_pred EEEEecCCCCHH----HHHHHhccCCC-CCCCCEEEEEeC-Chhhh--------hhcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 189 VLIVLDDVTCLN----QIESLVGSLDR-LLPESRILITTR-NKQVL--------RNCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 189 ~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR-~~~~~--------~~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
-+|+|||++... .-+.+...+.. ...+..||+||. .+.-+ ..+.....+++++.+.+.-.+++.+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 689999997431 11223222211 123456888874 33222 12233457899999999999999888
Q ss_pred hhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 255 AFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
+...... -..+.+..|++.+.|+.-.+.-+-
T Consensus 276 ~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 276 LEIEHGE--LPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHhcCCC--CCHHHHHHHHhccccCHHHHHHHH
Confidence 7433221 124678889999988876665443
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.62 E-value=1.4e-06 Score=92.54 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=98.2
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhh---cCC
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQK---AGG 155 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~---~~~ 155 (429)
..-++++||+.+++++.+.|. ....+.++|++|+||||+|..+++++.... ...+|..++...... ...
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge 263 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGE 263 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchH
Confidence 344689999999999999887 556788999999999999999999875432 122333333221100 011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------HHH---HHhccCCCCCCCCEEEEEeCCh
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------QIE---SLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~~~---~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
+..-.+.++.... -.+.+.+|+||+++... +.+ .|.+.+. ....++|-||...
T Consensus 264 ~e~~lk~ii~e~~---------------~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~ 326 (852)
T TIGR03345 264 FENRLKSVIDEVK---------------ASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWA 326 (852)
T ss_pred HHHHHHHHHHHHH---------------hcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHH
Confidence 1112222222111 02468999999997542 111 2333332 1224455555432
Q ss_pred hhh-------hhcCCCeEEEcCCCCHHHHHHHHHHhhhc--CCCCChhHHHHHHHHHHHhCCC
Q 048064 226 QVL-------RNCHINQIYEMKGLGDDHALELFIRHAFR--QNLVDVDYKELSDKVINYAQGV 279 (429)
Q Consensus 226 ~~~-------~~~~~~~~~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~~~~i~~~~~G~ 279 (429)
+.- ........+.+++++.+++.+++...... ....-.-..+....+++.+.+.
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 211 11123568999999999999997543311 1000011234556666666543
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.61 E-value=1.3e-06 Score=85.86 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcc-eeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFK-GSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
...+.|+|++|+|||+|++.+++.+.+..+ ..+.+.+.. .+...+...+... ..+.+...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~----------~~~~~~~~~~~~~-----~~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE----------KFTNDFVNALRNN-----KMEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH----------HHHHHHHHHHHcC-----CHHHHHHHHHh-
Confidence 346899999999999999999998876543 223222221 1122232222211 23344444543
Q ss_pred cEEEEecCCCCHH----HHHHHhccCCCC-CCCCEEEEEeCCh-hh--------hhhcCCCeEEEcCCCCHHHHHHHHHH
Q 048064 188 KVLIVLDDVTCLN----QIESLVGSLDRL-LPESRILITTRNK-QV--------LRNCHINQIYEMKGLGDDHALELFIR 253 (429)
Q Consensus 188 ~~LlVlDdv~~~~----~~~~l~~~l~~~-~~~~~iiiTtR~~-~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~ 253 (429)
.-+|+|||++... ..+.+...+... ..+..+|+|+... .. ...+.....+.+++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 3488999997432 122233322211 2355677877542 22 22223345789999999999999998
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 254 HAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
.+...... -..+.+..|++.+.|.+-.+.-+-
T Consensus 280 ~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 280 KAEEEGLE--LPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred HHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHH
Confidence 87543321 125678888999998887665443
No 89
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1e-05 Score=82.80 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=111.1
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc----------------------eeE
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK----------------------GSC 141 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~----------------------~~~ 141 (429)
..-..++|.+...+.|.+.+. -.+.+.++|+.|+||||+|+.++..+..... ...
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 445789999999999999987 3456889999999999999999987631100 000
Q ss_pred EEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEE
Q 048064 142 FLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRIL 219 (429)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~ii 219 (429)
.+ +... ......+ +.+...+... -..+.+-++|||+++.. ...+.|+..+.....++.+|
T Consensus 94 ~l-d~~~----~~~vd~I-r~li~~~~~~------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 94 EL-DAAS----NNSVDDI-RNLIEQVRIP------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred Ee-cccc----cCCHHHH-HHHHHHHhhC------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 00 0000 0011111 1111111000 01134558899999854 46778888877666666665
Q ss_pred E-EeCChhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 220 I-TTRNKQVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 220 i-TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
+ |+....+... ......+++.+++.++....+...+...... ...+.+..|++.++|...-+..
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 5 4444444443 2345679999999999999998766443322 1235678899999998765433
No 90
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.61 E-value=2.2e-06 Score=79.64 Aligned_cols=129 Identities=14% Similarity=0.164 Sum_probs=71.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
.+.++|++|+|||++|+.+++.+.... ....++.... ..+ ........ ......+.... ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---------~~l----~~~~~g~~--~~~~~~~~~~a--~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---------DDL----VGQYIGHT--APKTKEILKRA--MG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH---------HHH----hHhhcccc--hHHHHHHHHHc--cC
Confidence 689999999999999999888764321 1112222000 111 11111110 01111222222 23
Q ss_pred EEEEecCCCCH-----------HHHHHHhccCCCCCCCCEEEEEeCChhhhhh--c------CCCeEEEcCCCCHHHHHH
Q 048064 189 VLIVLDDVTCL-----------NQIESLVGSLDRLLPESRILITTRNKQVLRN--C------HINQIYEMKGLGDDHALE 249 (429)
Q Consensus 189 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~--~------~~~~~~~l~~L~~~ea~~ 249 (429)
-+|+||+++.. +..+.++..+.....+.+||+++.....-.. . .....+.+++++.+|..+
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~ 202 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLV 202 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHH
Confidence 58999999733 2345555555544455666666654322111 1 124568999999999999
Q ss_pred HHHHhhh
Q 048064 250 LFIRHAF 256 (429)
Q Consensus 250 L~~~~~~ 256 (429)
++...+-
T Consensus 203 I~~~~l~ 209 (284)
T TIGR02880 203 IAGLMLK 209 (284)
T ss_pred HHHHHHH
Confidence 9988763
No 91
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.60 E-value=1.9e-06 Score=83.52 Aligned_cols=177 Identities=14% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ 151 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 151 (429)
..-.++.|.+...++|.+.+. .++.+.++|++|+|||+||+.+++.....|- .+. ....
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s~l-- 215 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GSEF-- 215 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hHHH--
Confidence 334578899999988887653 4678999999999999999999987643321 111 1100
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--
Q 048064 152 KAGGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL-- 212 (429)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~-- 212 (429)
.... ... ....+.. +.......+.+|+||+++... .+..++..+...
T Consensus 216 --------~~k~----~ge--~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 216 --------VQKY----LGE--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred --------HHHh----cch--hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 0000 000 0001111 222234578999999986431 122333333221
Q ss_pred CCCCEEEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHH
Q 048064 213 LPESRILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKIL 286 (429)
Q Consensus 213 ~~~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~ 286 (429)
..+..||+||.....+.. ......+.++..+.++..++|..+...... ..+ -....++..+.|. |--|+.+
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-~~d--vd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-SEE--VDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-Ccc--cCHHHHHHHcCCCCHHHHHHH
Confidence 235567777765543321 124567889999999988888866533221 111 1145566677665 3334433
No 92
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.60 E-value=1.3e-06 Score=86.90 Aligned_cols=160 Identities=12% Similarity=0.122 Sum_probs=96.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcce-eEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKG-SCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
...+.|+|++|+|||+|++.+++.+..+++. .+.+.+.. .+...+...+.. ...+.+...+++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~----------~~~~~~~~~~~~-----~~~~~~~~~~~~- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE----------KFTNDFVNALRN-----NTMEEFKEKYRS- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH----------HHHHHHHHHHHc-----CcHHHHHHHHhc-
Confidence 3569999999999999999999998776532 22222221 112222222211 122334445543
Q ss_pred cEEEEecCCCCHH----HHHHHhccCCC-CCCCCEEEEEeCCh-h--------hhhhcCCCeEEEcCCCCHHHHHHHHHH
Q 048064 188 KVLIVLDDVTCLN----QIESLVGSLDR-LLPESRILITTRNK-Q--------VLRNCHINQIYEMKGLGDDHALELFIR 253 (429)
Q Consensus 188 ~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~L~~~ 253 (429)
.-+|||||++... ..+.+...+.. ...+..||+||... . +...+.....+++++++.++..+++..
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 4489999996431 12233332211 12345677777643 1 122333456799999999999999998
Q ss_pred hhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 254 HAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
.+...... -..+.++.|++.+.|..-.+.-+
T Consensus 292 ~~~~~~~~--l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 292 KAEEEGID--LPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHcCCC--CCHHHHHHHHcCcCCCHHHHHHH
Confidence 87542211 22467888999999988765444
No 93
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=8.6e-06 Score=82.41 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=113.1
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cce--eEEEe-echhhhhh-cCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKG--SCFLE-NIREESQK-AGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~--~~~~~-~~~~~~~~-~~~~~~ 158 (429)
..-.+++|-+..++.|...+. -.+.+.++|+.|+||||+|+.+++.+-.. .+. .|-.+ ++...... ..++..
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~ 92 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE 92 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE
Confidence 445789999999999999987 34568899999999999999999976321 000 00000 00000000 000000
Q ss_pred HHHHHHHHHhcCCCCCCCHHH---HHHH-----hcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-hhh
Q 048064 159 LQQKLLSEVLKDVNVIPHIDL---NFRR-----LSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN-KQV 227 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~---l~~~-----l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~ 227 (429)
+ .......++. +.+. ..+++-++|+|+++.. ...+.|+..+....+...+|++|.. ..+
T Consensus 93 --------i--dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 93 --------I--DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred --------e--cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 0 0000011222 1111 1345668999999855 4577888887765666666665543 333
Q ss_pred hhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 228 LRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 228 ~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
...+ .....+++.+++.++....+...+...... -..+.+..|++.++|.+..+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 234578999999999999998776443322 22466788999999988655443
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.59 E-value=1.5e-06 Score=82.42 Aligned_cols=146 Identities=18% Similarity=0.267 Sum_probs=86.5
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
....+++|.+...+.+..++. .+..+.++|++|+||||+|+.+++.....+ ..+ +... .....+ +..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i-~~~~-----~~~~~i-~~~ 87 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFV-NGSD-----CRIDFV-RNR 87 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEe-ccCc-----ccHHHH-HHH
Confidence 455789999999999999887 345677799999999999999998763221 122 2211 011111 111
Q ss_pred HHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH---HHHHHHhccCCCCCCCCEEEEEeCChhh-hhh-cCCCeEEE
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL---NQIESLVGSLDRLLPESRILITTRNKQV-LRN-CHINQIYE 238 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~-~~~~~~~~ 238 (429)
+....... .+.+.+-++||||++.. +....+...+.....++.+|+||..... .+. .+....+.
T Consensus 88 l~~~~~~~-----------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~ 156 (316)
T PHA02544 88 LTRFASTV-----------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVID 156 (316)
T ss_pred HHHHHHhh-----------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEE
Confidence 11111000 01134568999999855 2233343334444567788888865422 111 12335678
Q ss_pred cCCCCHHHHHHHHHH
Q 048064 239 MKGLGDDHALELFIR 253 (429)
Q Consensus 239 l~~L~~~ea~~L~~~ 253 (429)
++..+.++..+++..
T Consensus 157 ~~~p~~~~~~~il~~ 171 (316)
T PHA02544 157 FGVPTKEEQIEMMKQ 171 (316)
T ss_pred eCCCCHHHHHHHHHH
Confidence 888888888776654
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=4.4e-06 Score=84.75 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=110.1
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-e--eEEEe-echhhhhh-cCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-G--SCFLE-NIREESQK-AGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~--~~~~~-~~~~~~~~-~~~~~~ 158 (429)
....+++|.+..++.|.+.+. -.+.+.++|+.|+||||+|+.+++.+-..-+ . .|-.+ ++...... ..++..
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 455789999999999999987 3556788999999999999999987532110 0 00000 00000000 000000
Q ss_pred HHHHHHHHHhcC-CCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CChhhhh
Q 048064 159 LQQKLLSEVLKD-VNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RNKQVLR 229 (429)
Q Consensus 159 ~~~~l~~~~~~~-~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~~~~~ 229 (429)
+... ....+.+..+.... .++.-++|||+++.. .....|+..+.....+..+|++| ....+..
T Consensus 93 --------idaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 93 --------IDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred --------eeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 0000 00011111222221 235568999999855 46778887777655555555544 4333333
Q ss_pred h-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 048064 230 N-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 284 (429)
Q Consensus 230 ~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 284 (429)
. .+....+++.+++.++....+...+-.....- ..+.+..++..++|.+..+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 2 23356788999999999999887764333211 23567788889999886543
No 96
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.57 E-value=1.1e-06 Score=87.07 Aligned_cols=155 Identities=17% Similarity=0.299 Sum_probs=90.5
Q ss_pred CCCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc-----ceeEEEeec
Q 048064 87 DSKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF-----KGSCFLENI 146 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~ 146 (429)
..-..+.|.+..++++.+.+. .++-+.++|++|+|||++|+.+++.+...+ ....|+ ++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl-~v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL-NI 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE-ec
Confidence 344668889999999888753 456799999999999999999999876542 122333 22
Q ss_pred hhhhhhc---CCHHHHHHHHHHHHhcCCCCCCCHHHHHH-HhcCCcEEEEecCCCCHH--------------HHHHHhcc
Q 048064 147 REESQKA---GGLAFLQQKLLSEVLKDVNVIPHIDLNFR-RLSCRKVLIVLDDVTCLN--------------QIESLVGS 208 (429)
Q Consensus 147 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--------------~~~~l~~~ 208 (429)
....... .......+.++.. ... ...+++.+|+||+++... .+..|+..
T Consensus 258 ~~~eLl~kyvGete~~ir~iF~~-------------Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIFQR-------------AREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred cchhhcccccchHHHHHHHHHHH-------------HHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 2110000 0011111111111 111 123478999999997431 12344444
Q ss_pred CCCCC--CCCEEEEEeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 209 LDRLL--PESRILITTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 209 l~~~~--~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
+.... .+..||.||.....+.. + .....+.+++.+.++..++|..++
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 43222 33445556654433221 1 335568999999999999998886
No 97
>CHL00181 cbbX CbbX; Provisional
Probab=98.57 E-value=3.7e-06 Score=78.08 Aligned_cols=131 Identities=14% Similarity=0.197 Sum_probs=72.1
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcC-c-ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRN-F-KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
..+.++|++|+||||+|+.+++.+... + ...-++. +. ...+ ........ ......+.... .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~--------~~~l----~~~~~g~~--~~~~~~~l~~a--~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VT--------RDDL----VGQYIGHT--APKTKEVLKKA--M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ec--------HHHH----HHHHhccc--hHHHHHHHHHc--c
Confidence 348899999999999999998875432 1 1111221 10 1111 11111100 00111122222 2
Q ss_pred cEEEEecCCCCH-----------HHHHHHhccCCCCCCCCEEEEEeCChhhhh------hc--CCCeEEEcCCCCHHHHH
Q 048064 188 KVLIVLDDVTCL-----------NQIESLVGSLDRLLPESRILITTRNKQVLR------NC--HINQIYEMKGLGDDHAL 248 (429)
Q Consensus 188 ~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~------~~--~~~~~~~l~~L~~~ea~ 248 (429)
.-+|+||+++.. +..+.+...+.....+..||+++....+.. .+ .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 349999999743 234555555554445566777765432211 01 23457899999999999
Q ss_pred HHHHHhhhc
Q 048064 249 ELFIRHAFR 257 (429)
Q Consensus 249 ~L~~~~~~~ 257 (429)
+++...+-.
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887643
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.3e-05 Score=80.29 Aligned_cols=192 Identities=19% Similarity=0.175 Sum_probs=111.9
Q ss_pred CCCCcccchhhHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
.....++|.+..++.|..++.. .+.+.++|+.|+||||+|+.+++.+........-...++. -...+.+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~--------C~~C~~i 84 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK--------CELCRAI 84 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc--------cHHHHHH
Confidence 4457899999999999998872 4678999999999999999999976432100000000000 0000011
Q ss_pred HHHHhc-----C---CCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hh
Q 048064 164 LSEVLK-----D---VNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QV 227 (429)
Q Consensus 164 ~~~~~~-----~---~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~ 227 (429)
...... . ....+.+..+...+ .+++-++|||+++.. ...+.|+..+........+|++|.+. .+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 000000 0 00111111222221 234568999999854 46777887777655555555554443 33
Q ss_pred hhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 228 LRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 228 ~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
...+ .....+++.+++.++....+.+.+...... -..+.+..+++.++|.+..+..+..
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3332 235678899999999988887766432211 1135678899999998876554443
No 99
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.55 E-value=1.7e-06 Score=92.02 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=86.4
Q ss_pred CcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC-c-----ceeEEEeechhhhhhcC---CHHH
Q 048064 90 NELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-F-----KGSCFLENIREESQKAG---GLAF 158 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~---~~~~ 158 (429)
.+++||+.+++++.+.|. ....+.++|++|+|||++|..+++++... - ...+|..+......... .+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~ 258 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEE 258 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHH
Confidence 568999999999999997 55677899999999999999999987532 1 23444443322111000 0111
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHH----------HHHHHhccCCCCCCCCEEEEEeCChhh
Q 048064 159 LQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLN----------QIESLVGSLDRLLPESRILITTRNKQV 227 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~~iiiTtR~~~~ 227 (429)
- +..+...+ ..++.+|+||+++... ..+-|.+.+. ....++|.+|...+.
T Consensus 259 r-----------------l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey 319 (821)
T CHL00095 259 R-----------------LKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEY 319 (821)
T ss_pred H-----------------HHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHH
Confidence 1 11122222 2467899999996331 1122222222 123455555554432
Q ss_pred hh-------hcCCCeEEEcCCCCHHHHHHHHHH
Q 048064 228 LR-------NCHINQIYEMKGLGDDHALELFIR 253 (429)
Q Consensus 228 ~~-------~~~~~~~~~l~~L~~~ea~~L~~~ 253 (429)
.. .......+.++..+.++...++..
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 11 112346788999999999888764
No 100
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=3.2e-06 Score=86.13 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=110.5
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cc--eeEEEe-echhhhhh-cCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN-FK--GSCFLE-NIREESQK-AGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~--~~~~~~-~~~~~~~~-~~~~~~ 158 (429)
....+++|.+..++.|.+.+. -.+.+.++|+.|+||||+|+.+++.+-.. .. ..|-.+ .+...... ..++..
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 455789999999999999987 24567899999999999999999875321 10 000000 00000000 000000
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEe-CChhhhhh
Q 048064 159 LQQKLLSEVLKDVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITT-RNKQVLRN 230 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt-R~~~~~~~ 230 (429)
+ .+......+.+..+...+ .++.-++|||+++.. ...+.|+..+....+++.+|++| ....+...
T Consensus 93 i-------d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 93 I-------DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred e-------eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0 000000011112222222 234458999999854 45777888777666677666544 44444433
Q ss_pred c-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHH
Q 048064 231 C-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKIL 286 (429)
Q Consensus 231 ~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~ 286 (429)
+ .....+++.+++.++....+...+...... -..+.+..+++.++|... ++..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 234578899999999998887765433321 124567889999999774 44333
No 101
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.53 E-value=6.9e-06 Score=80.87 Aligned_cols=152 Identities=11% Similarity=0.126 Sum_probs=88.9
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcE
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKV 189 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 189 (429)
..+.|+|++|+|||+|++.+++.+......++++. . ..+...+...+.. ...+.+...++. .-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~----------~~f~~~~~~~l~~-----~~~~~f~~~~~~-~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S----------ELFTEHLVSAIRS-----GEMQRFRQFYRN-VD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H----------HHHHHHHHHHHhc-----chHHHHHHHccc-CC
Confidence 56899999999999999999998865543344443 1 1122223222221 122334444433 34
Q ss_pred EEEecCCCCHH----HHHHHhccCCC-CCCCCEEEEEeCC-hh--------hhhhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 190 LIVLDDVTCLN----QIESLVGSLDR-LLPESRILITTRN-KQ--------VLRNCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 190 LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~-~~--------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
+|+|||++... ..+.+...+.. ...+..||+||.. +. +...+.....+++.+++.++...++.+.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 88899996432 12223222211 1235578887754 22 12223345688999999999999998877
Q ss_pred hcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 256 FRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
-..... -..+...-|+..+.++-
T Consensus 285 ~~~~~~--l~~evl~~la~~~~~di 307 (445)
T PRK12422 285 EALSIR--IEETALDFLIEALSSNV 307 (445)
T ss_pred HHcCCC--CCHHHHHHHHHhcCCCH
Confidence 443211 12456676777777665
No 102
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=3.4e-06 Score=84.73 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=95.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcc-eeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFK-GSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
..+.|+|..|+|||+|+..+++.+...+. ..+.+... ..+...+...+.. ...+.+.+.+.+ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef~~el~~al~~-----~~~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEFTNEFINSIRD-----GKGDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHHHHHHHHHh-----ccHHHHHHHhhc-C
Confidence 45899999999999999999998765432 22332212 2222233222211 112334444443 3
Q ss_pred EEEEecCCCCH---HH-HHHHhccCCC-CCCCCEEEEEeCCh---------hhhhhcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 189 VLIVLDDVTCL---NQ-IESLVGSLDR-LLPESRILITTRNK---------QVLRNCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 189 ~LlVlDdv~~~---~~-~~~l~~~l~~-~~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
-+|||||++.. +. -+.|...+.. ...+..|||||... .+...+...-++.|.+.+.+.-.+++.+.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 47889999633 11 1223332221 13356688888753 22333455678999999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 255 AFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
+...... -..++++-|++.+.++.-.|.-+.
T Consensus 459 a~~r~l~--l~~eVi~yLa~r~~rnvR~LegaL 489 (617)
T PRK14086 459 AVQEQLN--APPEVLEFIASRISRNIRELEGAL 489 (617)
T ss_pred HHhcCCC--CCHHHHHHHHHhccCCHHHHHHHH
Confidence 7443322 225678888888887766554443
No 103
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.49 E-value=1.6e-06 Score=84.66 Aligned_cols=174 Identities=19% Similarity=0.275 Sum_probs=98.0
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc-
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA- 153 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~- 153 (429)
.++.|.+..+++|.+.+. .++.+.++|++|+|||++|+.+++.....|- .+. ........
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~seL~~k~~ 258 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GSELIQKYL 258 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cchhhhhhc
Confidence 567899999999888763 3567899999999999999999998755431 111 11000000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--CCC
Q 048064 154 GGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--LPE 215 (429)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~~ 215 (429)
.......+.+ +.....+.+.+|+||+++... .+..++..+..+ ..+
T Consensus 259 Ge~~~~vr~l----------------F~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 259 GDGPKLVREL----------------FRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred chHHHHHHHH----------------HHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 0001111111 112223567899999985321 112222222211 235
Q ss_pred CEEEEEeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh-HHHHHH
Q 048064 216 SRILITTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP-LALKIL 286 (429)
Q Consensus 216 ~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~ 286 (429)
..||+||.....+.. + .....+.+++.+.++..++|..+...-.... + -....++..+.|.- ..|..+
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-d--vdl~~la~~t~g~sgAdI~~i 396 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-D--VDLEEFIMAKDELSGADIKAI 396 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-C--cCHHHHHHhcCCCCHHHHHHH
Confidence 567777765544322 1 2356789999999999999987763322111 1 11345666665543 334433
No 104
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=3.6e-06 Score=79.49 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=65.5
Q ss_pred CcEEEEecCCC--CHHHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 048064 187 RKVLIVLDDVT--CLNQIESLVGSLDRLLPESRILITTRNK-QVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVD 262 (429)
Q Consensus 187 ~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 262 (429)
++-++|||+++ +.+..+.++..+....+++.+|++|.+. .+++.+ +....+.+.+++.+++.+.+..... ...
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~--~~~- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP--ESD- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc--cCC-
Confidence 34466789998 4567888888888766777777777665 344332 3456799999999999999976531 111
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHH
Q 048064 263 VDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 263 ~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
.+.+..++..++|.|+....+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 234567788999999765444
No 105
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.48 E-value=2.4e-05 Score=69.29 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=42.8
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
.....++|.+.+.+.|.+-.. +...+.++|..|+|||++++.+.+.+...-
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 556789999999998877543 667799999999999999999999886654
No 106
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.48 E-value=4.5e-06 Score=89.22 Aligned_cols=151 Identities=12% Similarity=0.078 Sum_probs=86.8
Q ss_pred CCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhcCCHHHH
Q 048064 88 SKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
.-++++||+.+++++...|. ....+.++|++|+|||++|..+++++.... ...+|..++............
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~- 249 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE- 249 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhh-
Confidence 34679999999999999887 556778999999999999999999875431 223443333221100000000
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhc--CCcEEEEecCCCCHH----------HHHHHhccCCCCCCCCEEEEEeCChhh
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRLS--CRKVLIVLDDVTCLN----------QIESLVGSLDRLLPESRILITTRNKQV 227 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~~iiiTtR~~~~ 227 (429)
....+..+...+. +++.+|+||+++... ..+.+.+.+. ....++|.+|.....
T Consensus 250 -------------~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 250 -------------FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEY 314 (852)
T ss_pred -------------HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHH
Confidence 0011112222222 368999999997442 1222222221 122344444443322
Q ss_pred hh-------hcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 228 LR-------NCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 228 ~~-------~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
-. .......+.++..+.++...++...
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 11 1123456889999999999988754
No 107
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4e-06 Score=77.28 Aligned_cols=170 Identities=16% Similarity=0.275 Sum_probs=99.9
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
..+=|-+..+++|.+... .++-|.+|||||.|||-||++++++... .|+..++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFIRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEEEeccH------
Confidence 356688999999988764 6788999999999999999999998643 33332211
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhc-CCcEEEEecCCCCHH----------------HHHHHhccCCCCC--CC
Q 048064 155 GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLS-CRKVLIVLDDVTCLN----------------QIESLVGSLDRLL--PE 215 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~--~~ 215 (429)
.-+++-+. ....-+.++....+ ..+.+|++|++|... ..-+|+..+..|. .+
T Consensus 220 --ElVqKYiG-------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 --ELVQKYIG-------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHhc-------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 11111111 11111223333333 468999999996331 1223444444443 45
Q ss_pred CEEEEEeCChhhh-----hhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHH
Q 048064 216 SRILITTRNKQVL-----RNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLA 282 (429)
Q Consensus 216 ~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 282 (429)
.+||..|...+.+ ..-...+.++++.-+.+.-.++|.-|.. ......+. -.+.+++.+.|.--|
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l~~dv--d~e~la~~~~g~sGA 359 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNLADDV--DLELLARLTEGFSGA 359 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-hccCccCc--CHHHHHHhcCCCchH
Confidence 6788766544332 2224566788886777777777776652 22222111 145677777776533
No 108
>CHL00176 ftsH cell division protein; Validated
Probab=98.45 E-value=8.8e-06 Score=83.39 Aligned_cols=177 Identities=15% Similarity=0.182 Sum_probs=101.4
Q ss_pred CCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 88 SKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
...++.|.+...+++.+.+. .++-+.++|++|+|||+||+.++......| +..+....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s~f---- 252 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGSEF---- 252 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHHHH----
Confidence 34678898888887777653 245799999999999999999998753221 11111110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--CC
Q 048064 154 GGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--LP 214 (429)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~ 214 (429)
..... . .....+.. +.......+.+|+|||+|... .+..++..+..+ ..
T Consensus 253 ------~~~~~----g--~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 253 ------VEMFV----G--VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred ------HHHhh----h--hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 00000 0 00011222 333345678999999996441 123343333222 23
Q ss_pred CCEEEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHH
Q 048064 215 ESRILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILG 287 (429)
Q Consensus 215 ~~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~~ 287 (429)
+..||.||...+.+.. ......+.++..+.++-.+++..++...... .......++..+.| .+--|..+.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCCCHHHHHHHH
Confidence 4456666655433221 1234678899999999999998887442211 12345677778777 444444433
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.43 E-value=4.3e-06 Score=89.05 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=86.6
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhc---CC
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKA---GG 155 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~---~~ 155 (429)
..-++++||+.+++++.+.|. ....+.++|++|+|||++|..++.++.... ...++..++....... ..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~ 254 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE 254 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhh
Confidence 334679999999999999887 556788999999999999999999875421 2334443333211100 11
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----------HHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----------QIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
+..-.+.++..+. -.+.+.+|++|+++... ..+-+.+.+. ....++|-+|...
T Consensus 255 ~e~~lk~~~~~~~---------------~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~ 317 (857)
T PRK10865 255 FEERLKGVLNDLA---------------KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLD 317 (857)
T ss_pred hHHHHHHHHHHHH---------------HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCH
Confidence 1111222222110 12467999999997552 1222333332 1233455444433
Q ss_pred hhh-------hhcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 226 QVL-------RNCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 226 ~~~-------~~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
+.. ........+.+...+.++...++...
T Consensus 318 e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 318 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred HHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 221 11122345667777889998888654
No 110
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.41 E-value=8.2e-06 Score=80.42 Aligned_cols=187 Identities=17% Similarity=0.212 Sum_probs=114.6
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCc-c--eeEEEe-echhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNF-K--GSCFLE-NIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~--~~~~~~-~~~~~~~~~~~~~~~ 159 (429)
....+++|-+.....|.+.+. -.+.....|+.|+||||+|+.++..+--.- + ..|--+ .+..... .....+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~--g~~~Dv 90 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE--GSLIDV 90 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc--CCcccc
Confidence 344678999999999999997 344578999999999999999998642110 0 001000 0000000 000000
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhc-----CCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhh-
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRLS-----CRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRN- 230 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~- 230 (429)
. .--......++++..+.+... ++.-++|||+|+.. ..+.+|+..+....++...|+.|.+. .+...
T Consensus 91 i----EiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 91 I----EIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred h----hhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 0 000000122333333444433 34569999999855 57899999998877788777666554 33322
Q ss_pred cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 048064 231 CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL 281 (429)
Q Consensus 231 ~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 281 (429)
++..+.|.+..++.++-...+...+...... -..+....|.+..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCChh
Confidence 3456789999999999999888877444322 224556777777777554
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.40 E-value=4e-06 Score=68.31 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.3
Q ss_pred EEEEcCCCcchHHHHHHHHHHhh
Q 048064 112 LGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 67999999999999999999974
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.39 E-value=4.1e-06 Score=87.31 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=84.2
Q ss_pred CcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhcCCHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
..++||+.+++++.+.|. ....+.++|++|+|||++|+.+++++.... ...+|..+... +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~----------l-- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS----------L-- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH----------H--
Confidence 469999999999999887 455678999999999999999998764321 12223221111 0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH----------HHHH-HHhccCCCCCCCCEEEEEeCChhhhh
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL----------NQIE-SLVGSLDRLLPESRILITTRNKQVLR 229 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~-~l~~~l~~~~~~~~iiiTtR~~~~~~ 229 (429)
+............+..+...+ ...+.+|+||+++.. .... .+.+.+. ....++|-+|...+...
T Consensus 254 --laG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 254 --LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred --hcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHH
Confidence 000000000011112222222 345689999999743 1111 1222222 12334444443332110
Q ss_pred -------hcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 230 -------NCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 230 -------~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
..+..+.+.+++++.+++.+++...
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 1123467999999999999998854
No 113
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.38 E-value=0.00028 Score=67.54 Aligned_cols=101 Identities=9% Similarity=0.047 Sum_probs=67.6
Q ss_pred cEEEEecCCCCH-----------HHHHHHhccCCCCCCCCEEEEEeCChhhhhh----c--CCCeEEEcCCCCHHHHHHH
Q 048064 188 KVLIVLDDVTCL-----------NQIESLVGSLDRLLPESRILITTRNKQVLRN----C--HINQIYEMKGLGDDHALEL 250 (429)
Q Consensus 188 ~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~----~--~~~~~~~l~~L~~~ea~~L 250 (429)
+-++||||+... .+|...+.. .+-.+||+.|-+...... + .....+.|...+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999999422 123322221 345678888876543322 2 2466788999999999999
Q ss_pred HHHhhhcCCCC------------------ChhHHHHHHHHHHHhCCChHHHHHHHHhhcC
Q 048064 251 FIRHAFRQNLV------------------DVDYKELSDKVINYAQGVPLALKILGCYLFE 292 (429)
Q Consensus 251 ~~~~~~~~~~~------------------~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~ 292 (429)
...++...... ...........++.+||--.-|..+++.++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 99887443110 0124455677888999999999999998865
No 114
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.37 E-value=1.6e-05 Score=80.09 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=98.0
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
..-.+++|-+...+++.+.+. .++-+.++|++|+|||+||+.++....-.| +..+...
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~~~---- 123 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISGSD---- 123 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccHHH----
Confidence 344678888887776665443 345699999999999999999998753222 1111111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--C
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--L 213 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~ 213 (429)
+.... .. .....+.. +.......+.+|+|||++... .+..++..+... .
T Consensus 124 ------~~~~~----~g--~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 124 ------FVEMF----VG--VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred ------HHHHH----hc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 00000 00 00011112 222234567899999996431 122333333222 2
Q ss_pred CCCEEEEEeCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHH
Q 048064 214 PESRILITTRNKQVLR-----NCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILG 287 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~~ 287 (429)
.+..||.||.....+. .......+.++..+.++-.+++..++....... ......+++.+.| .+--|..+.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHH
Confidence 2334555665543221 113456788999999999999987764322211 1224578888877 445555443
No 115
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3.3e-05 Score=72.42 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCC
Q 048064 186 CRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLV 261 (429)
Q Consensus 186 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 261 (429)
++.-++|||+++.. .....|+..+....+++.+|++|.+. .+++.+ +....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 34569999999844 56788888888777788777766654 444443 345678999999999999987542 1
Q ss_pred ChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 262 DVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 262 ~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
+ .+.+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2236678999999998665443
No 116
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.6e-05 Score=76.09 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=90.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
...+.|||+.|.|||+|++++++...+..+...++... .......+...+.. ...+.+++.. .-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~---------se~f~~~~v~a~~~-----~~~~~Fk~~y--~~ 176 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT---------SEDFTNDFVKALRD-----NEMEKFKEKY--SL 176 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc---------HHHHHHHHHHHHHh-----hhHHHHHHhh--cc
Confidence 67899999999999999999999988877754333211 12222222222221 2233455555 33
Q ss_pred EEEEecCCCCHH----HHHHHhccCCCC-CCCCEEEEEeCCh---------hhhhhcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 189 VLIVLDDVTCLN----QIESLVGSLDRL-LPESRILITTRNK---------QVLRNCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 189 ~LlVlDdv~~~~----~~~~l~~~l~~~-~~~~~iiiTtR~~---------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
-++++||++... .-+++...+... ..|..||+|++.. .+...+...-++.+.+++.+....++.+.
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 488999996321 123333333221 2344899988643 23334455678999999999999999986
Q ss_pred hhcCC-CCChhHHHHHHHHHHHhCCC
Q 048064 255 AFRQN-LVDVDYKELSDKVINYAQGV 279 (429)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~i~~~~~G~ 279 (429)
+.... ..+ .++..-++.....+
T Consensus 257 a~~~~~~i~---~ev~~~la~~~~~n 279 (408)
T COG0593 257 AEDRGIEIP---DEVLEFLAKRLDRN 279 (408)
T ss_pred HHhcCCCCC---HHHHHHHHHHhhcc
Confidence 63333 222 24444455544443
No 117
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.30 E-value=2.2e-05 Score=77.99 Aligned_cols=172 Identities=12% Similarity=0.093 Sum_probs=93.9
Q ss_pred CCCcccchhhHHHHHHHhh------------cCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCC
Q 048064 88 SKNELVGVESRVEEIQSLL------------GAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGG 155 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 155 (429)
...++-|.+...+.+.+.. ..++-+.++|++|+|||.+|+.+++...-.| +..+.........+
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vG 301 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVG 301 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccC
Confidence 3456788877666665421 1467799999999999999999999864322 22111111000000
Q ss_pred -HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--------------HHHHHhccCCCCCCCCEEEE
Q 048064 156 -LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--------------QIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 156 -~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~~~~~~iii 220 (429)
.....+.++ ...-...+.+|+||++|... .+..++..+.....+.-||.
T Consensus 302 ese~~l~~~f----------------~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 302 ESESRMRQMI----------------RIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred hHHHHHHHHH----------------HHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 111111111 11123468999999997331 11223333332233444556
Q ss_pred EeCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 221 TTRNKQVLR-----NCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 221 TtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
||.....++ .......+.++..+.++-.++|..+........ ........+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 776553221 123456788999999999999988874432111 00112456677776654
No 118
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=4.7e-05 Score=71.52 Aligned_cols=173 Identities=11% Similarity=0.119 Sum_probs=98.2
Q ss_pred HHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEe-echhhhh-hcCCHHHHHHHHHHHHhcC
Q 048064 99 VEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLE-NIREESQ-KAGGLAFLQQKLLSEVLKD 170 (429)
Q Consensus 99 ~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~-~~~~~~~-~~~~~~~~~~~l~~~~~~~ 170 (429)
-+.|.+.+. -.+...++|+.|+||+++|..++..+--.-+ ..|-.+ .++.... ...++..+.. ..+.
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-----~~~~ 85 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP-----IDNK 85 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc-----ccCC
Confidence 344555554 3567889999999999999999986532110 000000 0000000 0000000000 0000
Q ss_pred CCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhc-CCCeEEEcCC
Q 048064 171 VNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRNC-HINQIYEMKG 241 (429)
Q Consensus 171 ~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~ 241 (429)
.-.++.+..+.+.+ .++.-++|||+++.. .....|+..+....++..+|++|.+. .+++.. +....+.+.+
T Consensus 86 ~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~ 165 (325)
T PRK06871 86 DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHP 165 (325)
T ss_pred CCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCC
Confidence 00111222232332 245568899999844 57788999888877787777777655 444442 3456899999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 048064 242 LGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 283 (429)
Q Consensus 242 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 283 (429)
++.++..+.+...... . ...+..++..++|.|+..
T Consensus 166 ~~~~~~~~~L~~~~~~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 166 PEEQQALDWLQAQSSA----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCHHHHHHHHHHHhcc----C---hHHHHHHHHHcCCCHHHH
Confidence 9999999999776411 1 123566788899999644
No 119
>PRK12377 putative replication protein; Provisional
Probab=98.28 E-value=8.9e-06 Score=73.51 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
+...+.|+|++|+|||+||..+++.+......+.++. + ..+...+....... .....+.+.+. +
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-~----------~~l~~~l~~~~~~~----~~~~~~l~~l~-~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-V----------PDVMSRLHESYDNG----QSGEKFLQELC-K 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-H----------HHHHHHHHHHHhcc----chHHHHHHHhc-C
Confidence 4578999999999999999999999876644445543 1 12222222221111 11222333443 3
Q ss_pred cEEEEecCCCC----HHHHHHHhccCCC-CCCCCEEEEEeCCh
Q 048064 188 KVLIVLDDVTC----LNQIESLVGSLDR-LLPESRILITTRNK 225 (429)
Q Consensus 188 ~~LlVlDdv~~----~~~~~~l~~~l~~-~~~~~~iiiTtR~~ 225 (429)
.-||||||+.. ....+.|...+.. ......+||||...
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 45999999932 2222333333321 22344578887643
No 120
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.28 E-value=1.6e-05 Score=81.69 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=40.0
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.....++|++..++.+.+.+. ....++|+|++|+||||||+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 445679999999999887776 55679999999999999999988765
No 121
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.27 E-value=1.9e-05 Score=76.86 Aligned_cols=239 Identities=16% Similarity=0.077 Sum_probs=128.4
Q ss_pred cchhhHHHHHHHhhcCCC-EEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCC
Q 048064 93 VGVESRVEEIQSLLGAAP-LLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDV 171 (429)
Q Consensus 93 vGR~~~~~~l~~~l~~~~-~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (429)
.-|..-+.++.+.+...+ ++.|.|+.++||||+++.+.....+. .+++....... ....+ ...+..
T Consensus 20 ~~~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~----~~~~l-~d~~~~----- 86 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRL----DRIEL-LDLLRA----- 86 (398)
T ss_pred hhHHhhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhc----chhhH-HHHHHH-----
Confidence 334455666666666333 99999999999999997777765544 34443222111 11111 111111
Q ss_pred CCCCCHHHHHHHhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhhhh-----c-CCCeEEEcCCCCHH
Q 048064 172 NVIPHIDLNFRRLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVLRN-----C-HINQIYEMKGLGDD 245 (429)
Q Consensus 172 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~-----~-~~~~~~~l~~L~~~ 245 (429)
+...-..++..++||+|+....|...+..+.+.++. +|++|+-+...... + +....+.+-||+-.
T Consensus 87 --------~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 87 --------YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred --------HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 111111267899999999999999888888766666 88888877644322 1 34567899999999
Q ss_pred HHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCC
Q 048064 246 HALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEVWENAIKKLKNFLHQNILDVLKISYDDLD 325 (429)
Q Consensus 246 ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~ 325 (429)
|...+..... ... .. ...-+-.-..||.|.++..-...-. ........ ...+ +.+..- ..+
T Consensus 158 Efl~~~~~~~----~~~-~~-~~~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~~~---~~~D---i~~~~~-~~~ 218 (398)
T COG1373 158 EFLKLKGEEI----EPS-KL-ELLFEKYLETGGFPESVKADLSEKK------LKEYLDTI---LKRD---IIERGK-IEN 218 (398)
T ss_pred HHHhhccccc----chh-HH-HHHHHHHHHhCCCcHHHhCcchhhH------HHHHHHHH---HHHH---HHHHcC-ccc
Confidence 9877643100 000 11 1122233457899988743221110 00111100 0001 111000 011
Q ss_pred -hhhHHHHhhhhcc-cCCcCHHHHHHHHH-HcCCChhhhHHHHHHcCcee
Q 048064 326 -NDEKNIFLDVACF-FKGEDIYLVKKFFE-ASGFYPEIGISILVDKALIA 372 (429)
Q Consensus 326 -~~~~~~l~~la~f-~~~~~~~~l~~~~~-~~~~~~~~~l~~L~~~sLi~ 372 (429)
...+.++..++-. +..++...+...+. -+......+++.|.+.-++.
T Consensus 219 ~~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~ 268 (398)
T COG1373 219 ADLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLF 268 (398)
T ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheE
Confidence 2344554444443 34567777777773 33333445677777777666
No 122
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=9e-05 Score=69.46 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=97.9
Q ss_pred HHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC--------------------cceeEEEeechhhhhhcCC
Q 048064 99 VEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN--------------------FKGSCFLENIREESQKAGG 155 (429)
Q Consensus 99 ~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~~~~~~ 155 (429)
-+++...+. -.+.+.++|+.|+||+++|..+++.+--. ++...++..... .. .-.
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~-~I~ 89 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GK-SIT 89 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CC-cCC
Confidence 344555554 35678999999999999999999864211 111222210000 00 000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hh
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QV 227 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~ 227 (429)
++.+..+.+.+ .++.-++|||+++.. .....++..+....+++.+|++|.+. .+
T Consensus 90 ------------------vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 90 ------------------VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred ------------------HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 11111122222 234569999999844 57788998888877777766666554 45
Q ss_pred hhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 228 LRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 228 ~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
++.+ +....+.+.+++.+++.+.+.... .+ ....++..++|.|+....+
T Consensus 152 LpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 152 LPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 5443 345688999999999999986542 11 1346788999999876544
No 123
>PRK08116 hypothetical protein; Validated
Probab=98.25 E-value=5.5e-06 Score=76.16 Aligned_cols=103 Identities=23% Similarity=0.243 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
...+.|+|.+|+|||+||..+++.+..+...++++. . ..+...+...... ........+...+.+-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~----------~~ll~~i~~~~~~--~~~~~~~~~~~~l~~~d 180 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F----------PQLLNRIKSTYKS--SGKEDENEIIRSLVNAD 180 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H----------HHHHHHHHHHHhc--cccccHHHHHHHhcCCC
Confidence 346899999999999999999999876633344443 2 2222233222211 11122334555565544
Q ss_pred EEEEecCCCC--HH--HHHHHhccCC-CCCCCCEEEEEeCCh
Q 048064 189 VLIVLDDVTC--LN--QIESLVGSLD-RLLPESRILITTRNK 225 (429)
Q Consensus 189 ~LlVlDdv~~--~~--~~~~l~~~l~-~~~~~~~iiiTtR~~ 225 (429)
||||||+.. .. ....+...+. ....+..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999932 22 2222333222 123566789998754
No 124
>PRK08181 transposase; Validated
Probab=98.25 E-value=5.2e-06 Score=75.97 Aligned_cols=105 Identities=24% Similarity=0.228 Sum_probs=59.3
Q ss_pred HhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 048064 104 SLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRR 183 (429)
Q Consensus 104 ~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 183 (429)
+|+.....+.++|++|+|||+||..+++.+..+...+.|+. ...+...+..... ..........
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~-----~~~~~~~l~~ 164 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARR-----ELQLESAIAK 164 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHh-----CCcHHHHHHH
Confidence 46667778999999999999999999998766543444443 1222333322111 1122233333
Q ss_pred hcCCcEEEEecCCCCH----HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 184 LSCRKVLIVLDDVTCL----NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 184 l~~~~~LlVlDdv~~~----~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
+. +.-||||||+... .....+...+...-.+..+||||...
T Consensus 165 l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 165 LD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred Hh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 33 3349999999522 22223333332111224688888755
No 125
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=5.1e-05 Score=71.94 Aligned_cols=159 Identities=12% Similarity=0.113 Sum_probs=98.3
Q ss_pred HHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC---------------------cceeEEEeechhhhhhcC
Q 048064 99 VEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN---------------------FKGSCFLENIREESQKAG 154 (429)
Q Consensus 99 ~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~ 154 (429)
-+++.+.+. -.+...++|+.|+||+++|..++..+--. ++...++..-.. .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~--- 85 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--K--- 85 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--c---
Confidence 345555554 35678899999999999999999875221 111122210000 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-----cCCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCCh-h
Q 048064 155 GLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-----SCRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNK-Q 226 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~ 226 (429)
..-.++.+..+.+.+ .+++-++|||+++. ......|+..+....++..+|.+|.+. .
T Consensus 86 ---------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 86 ---------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred ---------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 000011122233332 24556999999984 457888999888877777766666654 4
Q ss_pred hhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHH
Q 048064 227 VLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALK 284 (429)
Q Consensus 227 ~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~ 284 (429)
+++.+ +....+.+.+++.+++.+.+..... .+ .+.+..++..++|.|....
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC----CC---HHHHHHHHHHcCCCHHHHH
Confidence 55442 3455789999999999998865421 11 2336678899999996443
No 126
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.6e-05 Score=73.17 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=90.1
Q ss_pred cccc-hhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC---------------------cceeEEEee
Q 048064 91 ELVG-VESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN---------------------FKGSCFLEN 145 (429)
Q Consensus 91 ~~vG-R~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~ 145 (429)
.++| -+..++.|...+. -++...++|+.|+||||+|..+++.+-.. ++...++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4566 6667778888776 35667999999999999999999875321 111111110
Q ss_pred chhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-----cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEE
Q 048064 146 IREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-----SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRI 218 (429)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~i 218 (429)
- .. ... .+.+..+.+.+ .+.+-++|+|+++.. ...+.|+..+....+++.+
T Consensus 86 ~-~~---~i~------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 86 D-GQ---SIK------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred c-cc---cCC------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 0 00 000 11111122222 234558999999844 4677888888877778877
Q ss_pred EEEeCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHh
Q 048064 219 LITTRNK-QVLRNC-HINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 219 iiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
|++|.+. .+.+.+ +....+++.+++.++..+.+...
T Consensus 144 Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 7777654 333332 34578999999999998888654
No 127
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.22 E-value=4.1e-05 Score=80.90 Aligned_cols=176 Identities=15% Similarity=0.231 Sum_probs=98.2
Q ss_pred CCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 88 SKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
.-..+.|.+...+.|.+.+. .++-+.++|++|+|||++|+.+++....+| +.....+....
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~l~~~ 526 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPEILSK 526 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHHHhhc
Confidence 34567888888887777553 345689999999999999999999865433 11111111000
Q ss_pred cC-CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--------------HHHHHhccCCCC--CCC
Q 048064 153 AG-GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--------------QIESLVGSLDRL--LPE 215 (429)
Q Consensus 153 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~--~~~ 215 (429)
.. ......+.+ +...-...+.+|+||+++... ....++..+... ..+
T Consensus 527 ~vGese~~i~~~----------------f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 527 WVGESEKAIREI----------------FRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ccCcHHHHHHHH----------------HHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 00 011111111 112224467899999996431 223344444322 233
Q ss_pred CEEEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh-HHHHHH
Q 048064 216 SRILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP-LALKIL 286 (429)
Q Consensus 216 ~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-Lai~~~ 286 (429)
..||.||..+..+.. -.....+.++..+.++-.++|..+........ . .....+++.+.|.- ..|..+
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~-~--~~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE-D--VDLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc-c--CCHHHHHHHcCCCCHHHHHHH
Confidence 345556655543221 13456788999999999999976653222111 1 11456777777754 334433
No 128
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.19 E-value=8.1e-05 Score=68.43 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 98 RVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 98 ~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++++..++...+.+.|.|++|+|||++|+.+++..
T Consensus 10 l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555555566778899999999999999999865
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.19 E-value=2.8e-05 Score=82.10 Aligned_cols=169 Identities=16% Similarity=0.167 Sum_probs=93.4
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
..++.|.+..++++.+++. ..+.+.++|++|+|||+||+.+++.....| +..+........
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISINGPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEecHHHhccc
Confidence 3568899999999988763 356799999999999999999998764332 222221111000
Q ss_pred C-CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------------HHHHHhccCCCCC-CCCEE
Q 048064 154 G-GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------------QIESLVGSLDRLL-PESRI 218 (429)
Q Consensus 154 ~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~~-~~~~i 218 (429)
. ......+.+ +.....+.+.+|+|||++... ....++..+.... .+..+
T Consensus 253 ~g~~~~~l~~l----------------f~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 253 YGESEERLREI----------------FKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred ccHHHHHHHHH----------------HHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 0 001111111 122234467899999986431 1233443333222 23334
Q ss_pred EE-EeCChh-hhhhc----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 219 LI-TTRNKQ-VLRNC----HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 219 ii-TtR~~~-~~~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
+| ||.... +...+ .....+.+...+.++-.+++..+..... ... ......+++.+.|..
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~-l~~--d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP-LAE--DVDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC-Ccc--ccCHHHHHHhCCCCC
Confidence 44 454332 11111 2345678888899998888886542211 111 112566777777764
No 130
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=1.3e-05 Score=81.66 Aligned_cols=48 Identities=25% Similarity=0.463 Sum_probs=41.3
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
....+++|-++.++++..++. ..++++|+|++|+||||+++.++..+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 556789999999999999886 345799999999999999999998653
No 131
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.7e-05 Score=78.74 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=95.8
Q ss_pred cccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCC
Q 048064 91 ELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGG 155 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 155 (429)
++=|.++..++|.+... .++-|.++||||+|||++|+.+++...-+|-.+ .-..-.+.-...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---kgpEL~sk~vGe 511 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---KGPELFSKYVGE 511 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---cCHHHHHHhcCc
Confidence 34447766666665543 678899999999999999999999876665322 000000110112
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------------HHHHHhccCCCCCCCCEEEE--
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------------QIESLVGSLDRLLPESRILI-- 220 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~~~~~~iii-- 220 (429)
-++..+.++++. -..-+.+++||++|... .+..++..+........|+|
T Consensus 512 SEr~ir~iF~kA----------------R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 512 SERAIREVFRKA----------------RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred hHHHHHHHHHHH----------------hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 233333333322 22356899999997443 23344444443333333433
Q ss_pred -EeCChhhhhh-c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 048064 221 -TTRNKQVLRN-C---HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL 281 (429)
Q Consensus 221 -TtR~~~~~~~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 281 (429)
|.|...+-.. + ...+.+.+++-+.+.-.++|+.++-.-. ..+. -...+|++.++|.--
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp-~~~~--vdl~~La~~T~g~SG 638 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP-FSED--VDLEELAQATEGYSG 638 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC-CCcc--ccHHHHHHHhccCCh
Confidence 4443322221 2 3567788888888888999988873322 1111 124667777776643
No 132
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=8.5e-05 Score=68.02 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=105.2
Q ss_pred hHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-----eeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 97 SRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-----GSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 97 ~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
..++.|.+++. ..+-+.|+|.+|+|||++++.+....-..++ ..++..... ...+...+...++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P----~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP----PEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC----CCCChHHHHHHHHHH
Confidence 34556666665 4567999999999999999999986433221 123333222 256788888999998
Q ss_pred HhcCCCCCCCHHH----HHHHhcC-CcEEEEecCCCCH-----HHHHHHhccCCCCC---CCCEEEEEeCChhhhhh---
Q 048064 167 VLKDVNVIPHIDL----NFRRLSC-RKVLIVLDDVTCL-----NQIESLVGSLDRLL---PESRILITTRNKQVLRN--- 230 (429)
Q Consensus 167 ~~~~~~~~~~~~~----l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~---~~~~iiiTtR~~~~~~~--- 230 (429)
++........... ....++. +.-+||||++++. ..-..++..+...+ .-+-|.+-|++-..+-.
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 8877433333333 3334443 3449999999764 23333333333223 23345555543311111
Q ss_pred --cCCCeEEEcCCCCHH-HHHHHHHHhh--hc-CCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 231 --CHINQIYEMKGLGDD-HALELFIRHA--FR-QNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 231 --~~~~~~~~l~~L~~~-ea~~L~~~~~--~~-~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
.+-..++.+++...+ +...|+.... .. .....-...+++..|+..++|+.--+..+
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 012345667765543 4455543321 11 11111234678899999999987655443
No 133
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.17 E-value=5.3e-06 Score=75.06 Aligned_cols=90 Identities=23% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc-CcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHH-------
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR-NFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDL------- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------- 179 (429)
....++|.|++|+|||||++.+++.+.. +|+..+|+..+.+. ......+++.+...+.......+....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 6788999999999999999999998754 57777787755442 245667776663332222111111111
Q ss_pred ---HHH-HhcCCcEEEEecCCCCHH
Q 048064 180 ---NFR-RLSCRKVLIVLDDVTCLN 200 (429)
Q Consensus 180 ---l~~-~l~~~~~LlVlDdv~~~~ 200 (429)
... .-.+++++|++|++....
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhh
Confidence 111 134789999999996543
No 134
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.8e-05 Score=74.23 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=41.8
Q ss_pred CCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 89 KNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
..++=|.+..+.+|.+++. .++-|.+|||+|+|||.||++++.++.-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 4678899999999998774 577899999999999999999999875443
No 135
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.3e-05 Score=78.62 Aligned_cols=156 Identities=22% Similarity=0.379 Sum_probs=91.2
Q ss_pred CCcccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHH
Q 048064 89 KNELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQ 160 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
+.+-+|.+...+++.++|. ..++++++||||+|||+|++.+++.+...|-. +.+--++..+. -.+-+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAE-IRGHR--- 396 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAE-IRGHR--- 396 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHH-hcccc---
Confidence 4578899999999999886 67899999999999999999999988777632 22211111111 00000
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH------HHHHHhccCCCCC-------------CCCEE-EE
Q 048064 161 QKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN------QIESLVGSLDRLL-------------PESRI-LI 220 (429)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~l~~~l~~~~-------------~~~~i-ii 220 (429)
+... ......+-+-....+.++-+++||++|... -..+++..|..-. .=|.| .|
T Consensus 397 RTYI------GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 397 RTYI------GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cccc------ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 0000 001111111122234466799999997432 2233444332111 11333 34
Q ss_pred EeCCh-h-h-hhhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 221 TTRNK-Q-V-LRNCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 221 TtR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
||-+. + + .+.+..-+++++.+.+++|-.++-.+++
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44332 2 2 2233445789999999999999988876
No 136
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.13 E-value=6e-05 Score=67.97 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
...+.++|.+|+|||+||..+++.+......++++. + ..+...+...... .......+...+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-~----------~~l~~~l~~~~~~---~~~~~~~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-V----------ADIMSAMKDTFSN---SETSEEQLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-H----------HHHHHHHHHHHhh---ccccHHHHHHHhc-cC
Confidence 357999999999999999999998866544444443 1 2222222222111 1112233445555 34
Q ss_pred EEEEecCCCCH--HHHH--HHhccCC-CCCCCCEEEEEeCCh
Q 048064 189 VLIVLDDVTCL--NQIE--SLVGSLD-RLLPESRILITTRNK 225 (429)
Q Consensus 189 ~LlVlDdv~~~--~~~~--~l~~~l~-~~~~~~~iiiTtR~~ 225 (429)
-+|||||+... ..|. .+...+. +......+||||...
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 48889999532 2222 2222221 122344577777643
No 137
>PRK06526 transposase; Provisional
Probab=98.11 E-value=5.5e-06 Score=75.39 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=26.0
Q ss_pred cCCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 107 GAAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 107 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+.+.|+|++|+|||+||..++......
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 367789999999999999999999887544
No 138
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.10 E-value=4.9e-06 Score=71.56 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=28.0
Q ss_pred hcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 106 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 106 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
+....-+.++|++|+|||.||..+++.+..+-..+.|+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 336778999999999999999999998766544455554
No 139
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.10 E-value=0.00016 Score=76.69 Aligned_cols=48 Identities=29% Similarity=0.552 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 90 NELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
...+|.+...+++.+++. ..+.+.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 457899999988888664 345799999999999999999999875443
No 140
>PRK10536 hypothetical protein; Provisional
Probab=98.09 E-value=3.3e-05 Score=69.30 Aligned_cols=133 Identities=12% Similarity=0.209 Sum_probs=76.0
Q ss_pred CCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHH-h-hcCcceeEEEeechhhhh----hcCCHHHHH--
Q 048064 89 KNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNR-I-SRNFKGSCFLENIREESQ----KAGGLAFLQ-- 160 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~~~-- 160 (429)
...+.+|......+..++.....+.+.|++|+|||+||..++.+ + ...|...+.....-.... ...+...-.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 35577788888888888887779999999999999999998885 3 334443333221111000 011111111
Q ss_pred --HHHHHHHhcCCCCCCCHHH------------HHHHhcCCcE---EEEecCCCCHH--HHHHHhccCCCCCCCCEEEEE
Q 048064 161 --QKLLSEVLKDVNVIPHIDL------------NFRRLSCRKV---LIVLDDVTCLN--QIESLVGSLDRLLPESRILIT 221 (429)
Q Consensus 161 --~~l~~~~~~~~~~~~~~~~------------l~~~l~~~~~---LlVlDdv~~~~--~~~~l~~~l~~~~~~~~iiiT 221 (429)
+.+...+..-. ....++. -..+++++.+ +||+|++.+.. +...++ .+.+.++++|+|
T Consensus 134 ~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~v~~ 209 (262)
T PRK10536 134 YFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEEEEe
Confidence 11222211110 0011111 2335566554 99999998554 444444 345789999998
Q ss_pred eCCh
Q 048064 222 TRNK 225 (429)
Q Consensus 222 tR~~ 225 (429)
.-..
T Consensus 210 GD~~ 213 (262)
T PRK10536 210 GDIT 213 (262)
T ss_pred CChh
Confidence 7543
No 141
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.08 E-value=1e-05 Score=76.74 Aligned_cols=90 Identities=22% Similarity=0.165 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc-CcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHH-------
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR-NFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDL------- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------- 179 (429)
..+..+|+|++|+|||||++.+++.+.. +|+..+|+..+.+. ......+++.+...+.....+.+....
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 6788999999999999999999998765 58888888866653 134566666665322222111111111
Q ss_pred --HHHH--hcCCcEEEEecCCCCHH
Q 048064 180 --NFRR--LSCRKVLIVLDDVTCLN 200 (429)
Q Consensus 180 --l~~~--l~~~~~LlVlDdv~~~~ 200 (429)
..++ ..+++++|++|++....
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHH
Confidence 1111 35789999999997554
No 142
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00057 Score=60.61 Aligned_cols=184 Identities=15% Similarity=0.172 Sum_probs=98.5
Q ss_pred HHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCC-CC--
Q 048064 99 VEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVN-VI-- 174 (429)
Q Consensus 99 ~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-- 174 (429)
+..+...+. +.+++.++|.-|.|||.+++.+...+-++ ...+.+.+.. ......+...+...+..... ..
T Consensus 40 l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d-~~~~v~i~~~-----~~s~~~~~~ai~~~l~~~p~~~~~~ 113 (269)
T COG3267 40 LLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNED-QVAVVVIDKP-----TLSDATLLEAIVADLESQPKVNVNA 113 (269)
T ss_pred HHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCC-ceEEEEecCc-----chhHHHHHHHHHHHhccCccchhHH
Confidence 333444444 56699999999999999999555444322 2222222121 22233344444444433210 11
Q ss_pred --CCHHH-HHHH-hcCCc-EEEEecCCCCH--HHH---HHHhccCCCCCCCCEEEEEeCCh-------hhhhhcC-CCeE
Q 048064 175 --PHIDL-NFRR-LSCRK-VLIVLDDVTCL--NQI---ESLVGSLDRLLPESRILITTRNK-------QVLRNCH-INQI 236 (429)
Q Consensus 175 --~~~~~-l~~~-l~~~~-~LlVlDdv~~~--~~~---~~l~~~l~~~~~~~~iiiTtR~~-------~~~~~~~-~~~~ 236 (429)
...+. +... .++++ +.+++|+.++. +.+ ..|...-......-+|+....-+ ..+.... ....
T Consensus 114 ~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~i 193 (269)
T COG3267 114 VLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDI 193 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEE
Confidence 11111 2222 23455 99999999644 233 33332222222222333322211 1111111 1223
Q ss_pred -EEcCCCCHHHHHHHHHHhhhcCCCCChh-HHHHHHHHHHHhCCChHHHHHHHH
Q 048064 237 -YEMKGLGDDHALELFIRHAFRQNLVDVD-YKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 237 -~~l~~L~~~ea~~L~~~~~~~~~~~~~~-~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
|.++|++.++...++..++.+...+.+- ..+....+.....|.|.+|..++.
T Consensus 194 r~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 194 RIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 8999999999999998887544333222 346778899999999999988764
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.05 E-value=8.4e-05 Score=78.38 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHHhhc-----------CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 89 KNELVGVESRVEEIQSLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...++|.+..++.+.+.+. ...++.++|++|+|||+||+.+++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 4568899999998888765 123578999999999999999999773
No 144
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00039 Score=65.91 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=63.1
Q ss_pred CcEEEEecCCC--CHHHHHHHhccCCCCCCCCEEEEEeCC-hhhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 048064 187 RKVLIVLDDVT--CLNQIESLVGSLDRLLPESRILITTRN-KQVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVD 262 (429)
Q Consensus 187 ~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 262 (429)
+.-++|||+++ +......|+..+....+++.+|++|.+ ..+++.+ +....+.+.+++.++..+.+.... ...
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 45589999998 446788899888877778776655554 4455442 345789999999999999997652 111
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHH
Q 048064 263 VDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 263 ~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
...+...++|.|+....+
T Consensus 208 ------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 208 ------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ------HHHHHHHcCCCHHHHHHH
Confidence 223577889999755444
No 145
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=0.00013 Score=68.02 Aligned_cols=157 Identities=20% Similarity=0.308 Sum_probs=95.9
Q ss_pred CCcccchhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 89 KNELVGVESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
.+.+.+|+.+++.+..++. -+..|.|+|.+|.|||.+.+++.+... ...+|+.... ......+...+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~e-----cft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVE-----CFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHH-----hccHHHHHHHH
Confidence 4578899999999999997 234568999999999999999998762 2345655333 45677778888
Q ss_pred HHHHhcCCCCCC-------CHHH----HHH--Hhc--CCcEEEEecCCCCHHHHHH-----H---hccCCCCCCCCEEEE
Q 048064 164 LSEVLKDVNVIP-------HIDL----NFR--RLS--CRKVLIVLDDVTCLNQIES-----L---VGSLDRLLPESRILI 220 (429)
Q Consensus 164 ~~~~~~~~~~~~-------~~~~----l~~--~l~--~~~~LlVlDdv~~~~~~~~-----l---~~~l~~~~~~~~iii 220 (429)
+.+....+.+.. .+.. +.+ ... ++.++|||||++...+.++ + ...++ .+...|+.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCceEEEE
Confidence 887752211111 1111 111 122 3589999999986653221 1 12222 23333333
Q ss_pred EeCCh--hhhhhcCC--CeEEEcCCCCHHHHHHHHHHhh
Q 048064 221 TTRNK--QVLRNCHI--NQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 221 TtR~~--~~~~~~~~--~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
..-.. .....++. .-++.++..+.+|...++.+.-
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22211 12222333 3356789999999999997654
No 146
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=2.2e-05 Score=74.85 Aligned_cols=90 Identities=22% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHH---H----
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHID---L---- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~---- 179 (429)
..+.++|+|++|+|||||++.+++.+..+ |+..+|+..+.+. ...+..+++.++..+.....+.+... .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 67889999999999999999999987665 7778887765442 24677777777544333311111111 0
Q ss_pred ---H-HHHhcCCcEEEEecCCCCHH
Q 048064 180 ---N-FRRLSCRKVLIVLDDVTCLN 200 (429)
Q Consensus 180 ---l-~~~l~~~~~LlVlDdv~~~~ 200 (429)
. .....+++++|++|++....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHH
Confidence 1 11235789999999997654
No 147
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.01 E-value=3.3e-05 Score=70.35 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=30.9
Q ss_pred hcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 106 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 106 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
+....-+.++|++|+|||.||.++++.+......+.|+.
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 337788999999999999999999999884434444443
No 148
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.00 E-value=0.00017 Score=67.84 Aligned_cols=153 Identities=19% Similarity=0.276 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh-hcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ-KAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (429)
.++.++|||++|+|||.+|+.++..+.-.| +..+..+... ......+..++++...... ..-++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~-----------a~~~~ 211 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAADI-----------IKKKG 211 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHHH-----------hhccC
Confidence 677899999999999999999999875432 2332332211 1223344444444332110 00145
Q ss_pred CcEEEEecCCCCHH------------HH--HHHhccCC--------------CCCCCCEEEEEeCChhhhhh--cC---C
Q 048064 187 RKVLIVLDDVTCLN------------QI--ESLVGSLD--------------RLLPESRILITTRNKQVLRN--CH---I 233 (429)
Q Consensus 187 ~~~LlVlDdv~~~~------------~~--~~l~~~l~--------------~~~~~~~iiiTtR~~~~~~~--~~---~ 233 (429)
++.+|+||++|... +. ..|+..+. ...++..||+||.....+.. .. .
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRf 291 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRM 291 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCC
Confidence 78999999996221 11 23332211 12345667888876643222 11 1
Q ss_pred CeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 048064 234 NQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL 281 (429)
Q Consensus 234 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 281 (429)
...| ..-+.++-.++++.+... ...+ .....+|++...|-|+
T Consensus 292 Dk~i--~lPd~e~R~eIL~~~~r~-~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 292 EKFY--WAPTREDRIGVVHGIFRD-DGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred Ccee--CCCCHHHHHHHHHHHhcc-CCCC---HHHHHHHHHcCCCCCc
Confidence 2223 345667777777665533 3222 2446678888888775
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.99 E-value=0.00014 Score=77.53 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=39.2
Q ss_pred CCcccchhhHHHHHHHhhc-----------CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 89 KNELVGVESRVEEIQSLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...++|.+..++.+.+.+. ...++.++|++|+|||.||+.+++.+...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 4578999999999988774 12368899999999999999999887443
No 150
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.99 E-value=0.00016 Score=61.20 Aligned_cols=135 Identities=15% Similarity=0.214 Sum_probs=75.1
Q ss_pred chhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC--------------------cceeEEEeechhhh
Q 048064 94 GVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN--------------------FKGSCFLENIREES 150 (429)
Q Consensus 94 GR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~ 150 (429)
|-+...+.|.+.+. -++.+.++|+.|+||+++|..+++.+-.. ++...++......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 44566677777776 35678999999999999999999965321 2223333211000
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCChh-h
Q 048064 151 QKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNKQ-V 227 (429)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~~-~ 227 (429)
. .-....+. .+...+... ...+..-++||||++. .+...+|+..+.....++.+|++|.+.. +
T Consensus 80 ~-~i~i~~ir-~i~~~~~~~------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 80 K-SIKIDQIR-EIIEFLSLS------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp S-SBSHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred c-hhhHHHHH-HHHHHHHHH------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 0 01111111 222211111 0123466999999984 4577888888887778888888887764 3
Q ss_pred hhh-cCCCeEEEcCCCC
Q 048064 228 LRN-CHINQIYEMKGLG 243 (429)
Q Consensus 228 ~~~-~~~~~~~~l~~L~ 243 (429)
++. .+....+.+++++
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 333 2345677777764
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.98 E-value=0.00055 Score=73.45 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=72.1
Q ss_pred CCcccchhhHHHHHHHhhc----C-------CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHH
Q 048064 89 KNELVGVESRVEEIQSLLG----A-------APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLA 157 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----~-------~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 157 (429)
...++|.+..++.+...+. + ...+.++|++|+|||++|+.++..+.......+.+ ++..... ....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~-d~s~~~~-~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI-DMSEYME-KHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE-echhhcc-cchH-
Confidence 4578999999999998875 1 24688999999999999999999764432222222 2322111 1111
Q ss_pred HHHHHHHHHHhcCCCC---CCCHHHHHHHhcCCc-EEEEecCCC--CHHHHHHHhccCCCC-----------CCCCEEEE
Q 048064 158 FLQQKLLSEVLKDVNV---IPHIDLNFRRLSCRK-VLIVLDDVT--CLNQIESLVGSLDRL-----------LPESRILI 220 (429)
Q Consensus 158 ~~~~~l~~~~~~~~~~---~~~~~~l~~~l~~~~-~LlVlDdv~--~~~~~~~l~~~l~~~-----------~~~~~iii 220 (429)
..+....+. ......+...++.++ .+|+||+++ +.+.+..|+..+... ..++.||+
T Consensus 641 -------~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 641 -------ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred -------HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 111111111 111123444444444 489999997 444556666555321 12344777
Q ss_pred EeCC
Q 048064 221 TTRN 224 (429)
Q Consensus 221 TtR~ 224 (429)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 8765
No 152
>PRK09183 transposase/IS protein; Provisional
Probab=97.98 E-value=4.7e-05 Score=69.68 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
....+.|+|++|+|||+||..++.........+.|+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 667889999999999999999988755443233333
No 153
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.97 E-value=1.9e-05 Score=64.69 Aligned_cols=29 Identities=31% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
.+.+.|+|++|+||||+++.+++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 46799999999999999999999876654
No 154
>PRK06921 hypothetical protein; Provisional
Probab=97.96 E-value=2.4e-05 Score=71.83 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEe
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLE 144 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 144 (429)
...+.++|++|+|||+||..+++.+.++ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 5679999999999999999999988765 44455554
No 155
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.92 E-value=0.00011 Score=68.76 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=64.6
Q ss_pred chhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHH
Q 048064 94 GVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEV 167 (429)
Q Consensus 94 GR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (429)
+|...+....+++. ..+-+.|+|+.|+|||.||..+++.+......+.|+. ...+...+....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHH
Confidence 45444554455554 3457999999999999999999999875544455554 112222332222
Q ss_pred hcCCCCCCCHHHHHHHhcCCcEEEEecCCCC--HHHHH--HHhccC-C-CCCCCCEEEEEeCCh
Q 048064 168 LKDVNVIPHIDLNFRRLSCRKVLIVLDDVTC--LNQIE--SLVGSL-D-RLLPESRILITTRNK 225 (429)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~--~l~~~l-~-~~~~~~~iiiTtR~~ 225 (429)
.. .........+. +--||||||+.. ...|. .++..+ . +...+..+|+||.-.
T Consensus 204 ~~-----~~~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 204 SD-----GSVKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred hc-----CcHHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 11 12333344444 344899999952 22332 343332 2 112456688888643
No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.92 E-value=6.6e-05 Score=70.86 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=30.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
....+.++|++|+|||+||..+++.+......++|+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4578999999999999999999998876644555554
No 157
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00025 Score=72.65 Aligned_cols=173 Identities=14% Similarity=0.202 Sum_probs=104.9
Q ss_pred CCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 89 KNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
-.++.|-++..++|.+... -++-+.++||+|+|||-||++++-... +-|+.....
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS------ 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS------ 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH------
Confidence 4678888887777776553 467799999999999999999998643 222221110
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHH-HhcCCcEEEEecCCCCH-----------------HHHHHHhccCCCCCCCC
Q 048064 155 GLAFLQQKLLSEVLKDVNVIPHIDLNFR-RLSCRKVLIVLDDVTCL-----------------NQIESLVGSLDRLLPES 216 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-----------------~~~~~l~~~l~~~~~~~ 216 (429)
++..-... .....+..+.. .-.+.+.++.+|+++.. ..+..++..+..+....
T Consensus 379 -------EFvE~~~g--~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 -------EFVEMFVG--VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred -------HHHHHhcc--cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 01111100 11222333322 23457889999998532 12455555555444444
Q ss_pred EEEE--EeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHH
Q 048064 217 RILI--TTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLAL 283 (429)
Q Consensus 217 ~iii--TtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai 283 (429)
.||+ +|+..+++.. -...+.+.++.-+..+..++|.-++...... .+..+... ++..+.|++=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 3333 5554444322 2346678899999999999999888544433 34455566 889999988664
No 158
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00014 Score=70.34 Aligned_cols=127 Identities=21% Similarity=0.237 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH--HHHHHHhcCCCCCCCHHHHHHHhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ--KLLSEVLKDVNVIPHIDLNFRRLS 185 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~l~ 185 (429)
+...+.++|++|+|||+||..++.. ..|+.+-.++ .... -++..-.+ .+-. .+....+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe~m--iG~sEsaKc~~i~k-------------~F~DAYk 596 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PEDM--IGLSESAKCAHIKK-------------IFEDAYK 596 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hHHc--cCccHHHHHHHHHH-------------HHHHhhc
Confidence 4567889999999999999999875 4666544332 1111 11111110 0100 1233345
Q ss_pred CCcEEEEecCCCCHH------------HHHHHhccCCCCCCC-CE--EEEEeCChhhhhhcC----CCeEEEcCCCCH-H
Q 048064 186 CRKVLIVLDDVTCLN------------QIESLVGSLDRLLPE-SR--ILITTRNKQVLRNCH----INQIYEMKGLGD-D 245 (429)
Q Consensus 186 ~~~~LlVlDdv~~~~------------~~~~l~~~l~~~~~~-~~--iiiTtR~~~~~~~~~----~~~~~~l~~L~~-~ 245 (429)
..--+||+||++..- .++.|+-.+....|. -+ |+-||....++..++ ....+.++.++. +
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence 556799999996443 245555555544443 34 444777777877765 245788999987 7
Q ss_pred HHHHHHHHh
Q 048064 246 HALELFIRH 254 (429)
Q Consensus 246 ea~~L~~~~ 254 (429)
+..+.++..
T Consensus 677 ~~~~vl~~~ 685 (744)
T KOG0741|consen 677 QLLEVLEEL 685 (744)
T ss_pred HHHHHHHHc
Confidence 777777654
No 159
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.89 E-value=0.00039 Score=61.54 Aligned_cols=168 Identities=19% Similarity=0.250 Sum_probs=96.2
Q ss_pred CCcccchhhHHHH---HHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHH
Q 048064 89 KNELVGVESRVEE---IQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLA 157 (429)
Q Consensus 89 ~~~~vGR~~~~~~---l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 157 (429)
-++.||.+...+. |.+.|. .++.|..+|++|.|||.+|+++++.....| ......+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vkat~--------- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKATE--------- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEechHH---------
Confidence 4678898876554 344443 688999999999999999999998764322 1111111
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHH--------------HHHHHhccCCCC--CCCCEEEE
Q 048064 158 FLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLN--------------QIESLVGSLDRL--LPESRILI 220 (429)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~--~~~~~iii 220 (429)
-+....+ .....+.++.++. +.-+++++||++|... ..++|+..+... +.|...|.
T Consensus 187 ----liGehVG---dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 ----LIGEHVG---DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred ----HHHHHhh---hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1111111 1111222233322 3468999999996432 346666665533 23444555
Q ss_pred EeCChhhhhhc---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 048064 221 TTRNKQVLRNC---HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV 279 (429)
Q Consensus 221 TtR~~~~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 279 (429)
.|...+++... .....++...-+++|-..++...+-.-..+- . .-.+.++.+++|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~--~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-D--ADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-c--cCHHHHHHHhCCC
Confidence 56555544331 2345677777889999999988762211111 1 1145566666665
No 160
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.7e-05 Score=69.92 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
-.|+|.++||||.|||+|++++++++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhh
Confidence 35789999999999999999999964
No 161
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.87 E-value=0.0001 Score=77.68 Aligned_cols=155 Identities=19% Similarity=0.321 Sum_probs=86.1
Q ss_pred CcccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
...+|.+...+++.+++. ....++++|++|+||||+++.++..+...|-. +-+...+ +...+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~-i~~~~~~-------d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR-MALGGVR-------DEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-EEcCCCC-------CHHHhcc
Confidence 468999999999988775 45689999999999999999999876544321 1111111 1111100
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHHH------HHHHhccCCCC---------------CCCCEEEE
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLNQ------IESLVGSLDRL---------------LPESRILI 220 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~l~~~---------------~~~~~iii 220 (429)
.- .... ......+-.........+-+++||+++.... ...|+..+... ..+..+|.
T Consensus 394 ~~-~~~~--g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 394 HR-RTYI--GSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred ch-hccC--CCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 00 0000 0011111111111222344789999974321 34444443210 12333445
Q ss_pred EeCChhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 221 TTRNKQVLRN-CHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 221 TtR~~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
|+....+.+. +....++++.+++.+|-.++..+++
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6654433222 2334678999999999999987776
No 162
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.86 E-value=0.00016 Score=70.72 Aligned_cols=47 Identities=17% Similarity=0.079 Sum_probs=42.4
Q ss_pred CCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 89 KNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...++||++.++.+...+.....|.|.|++|+|||++|+.++.....
T Consensus 19 ~~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 45799999999999999988889999999999999999999987643
No 163
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00016 Score=68.38 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=54.2
Q ss_pred CcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCChh-hhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 048064 187 RKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNKQ-VLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLVD 262 (429)
Q Consensus 187 ~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 262 (429)
++-++|+|+++. ......++..+.....+..+|++|.+.. +.+.+ +....+.+.+++.+++.+.+.... ...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc
Confidence 344566798874 4456666666665555676777777653 33332 235678899999999998886542 111
Q ss_pred hhHHHHHHHHHHHhCCChHHH
Q 048064 263 VDYKELSDKVINYAQGVPLAL 283 (429)
Q Consensus 263 ~~~~~~~~~i~~~~~G~PLai 283 (429)
. ...+..++|.|+..
T Consensus 189 -~-----~~~l~~~~g~p~~~ 203 (325)
T PRK08699 189 -P-----EERLAFHSGAPLFD 203 (325)
T ss_pred -H-----HHHHHHhCCChhhh
Confidence 1 11235688999643
No 164
>PRK04132 replication factor C small subunit; Provisional
Probab=97.86 E-value=0.00051 Score=72.22 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=96.7
Q ss_pred EEEc--CCCcchHHHHHHHHHHhhc-CcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcE
Q 048064 113 GIWG--IGGIGKTTIARVIFNRISR-NFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKV 189 (429)
Q Consensus 113 ~I~G--~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 189 (429)
.+.| |.++||||+|..+++++-. .+...+.-.|++. ..+...+. .+........+. -..+.-
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd----~rgid~IR-~iIk~~a~~~~~----------~~~~~K 632 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD----ERGINVIR-EKVKEFARTKPI----------GGASFK 632 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC----cccHHHHH-HHHHHHHhcCCc----------CCCCCE
Confidence 3458 8999999999999998632 3333333333332 12333222 222222111000 012457
Q ss_pred EEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhH
Q 048064 190 LIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK-QVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDY 265 (429)
Q Consensus 190 LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~ 265 (429)
++|||++|.. .+...|+..+......+++|+++.+. .+.+. .+....+++.+++.++....+...+...... -.
T Consensus 633 VvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~ 710 (846)
T PRK04132 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LT 710 (846)
T ss_pred EEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CC
Confidence 9999999855 46777887777666777777665554 33333 2345789999999999998887765432211 12
Q ss_pred HHHHHHHHHHhCCChHHHHHHH
Q 048064 266 KELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 266 ~~~~~~i~~~~~G~PLai~~~~ 287 (429)
.+....|+..++|.+.....+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH
Confidence 4578899999999986554443
No 165
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.85 E-value=0.00037 Score=64.04 Aligned_cols=165 Identities=20% Similarity=0.210 Sum_probs=97.6
Q ss_pred CcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh-cCCHHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK-AGGLAFLQQK 162 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~ 162 (429)
..++|-.++-+.+..++. ....+.|+||.|.|||+|......+. +.+.-.+.+.-+...... ...+..+.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 568999999999999886 67789999999999999988777663 333333333333322110 1123333333
Q ss_pred HHHHHhcC----CCCCCCHHHHHHHhcC------CcEEEEecCCCCHH------HHHHHhccCC-CCCCCCEEEEEeCCh
Q 048064 163 LLSEVLKD----VNVIPHIDLNFRRLSC------RKVLIVLDDVTCLN------QIESLVGSLD-RLLPESRILITTRNK 225 (429)
Q Consensus 163 l~~~~~~~----~~~~~~~~~l~~~l~~------~~~LlVlDdv~~~~------~~~~l~~~l~-~~~~~~~iiiTtR~~ 225 (429)
+-.++... .+-.+.+..+...|+. .++++|+|++|-.. .+-.+..... ...|-|.|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 33333222 2333445556666653 36899999997322 1122222211 224556677899965
Q ss_pred h-------hhhhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 226 Q-------VLRNCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 226 ~-------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
- |-..++...++-++.++-++...++++..
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2 11222333456677788889998888765
No 166
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.84 E-value=0.00042 Score=74.12 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHhhc-------C----CCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 89 KNELVGVESRVEEIQSLLG-------A----APLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-------~----~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...++|.+..++.+...+. . ...+.++|++|+|||++|+.+++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4578999999999888775 1 136889999999999999999987643
No 167
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.81 E-value=5.7e-05 Score=73.23 Aligned_cols=46 Identities=28% Similarity=0.315 Sum_probs=40.7
Q ss_pred CcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 90 NELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.++++.+..++.+...+...+.+.++|++|+|||++|+.+++.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4577888899999999888889999999999999999999998754
No 168
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.80 E-value=0.00049 Score=71.36 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=88.4
Q ss_pred CcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCC
Q 048064 90 NELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGG 155 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 155 (429)
.++.|.+...+++.+.+. -++-+.|+|++|+|||++|+.++....-.| +..+.........+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~~~~~~~~g 227 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSDFVEMFVG 227 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehHHhHHhhhc
Confidence 355676666666555442 144699999999999999999998764332 11111111000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCCC--CCC
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRLL--PES 216 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~--~~~ 216 (429)
.....+.. +.......+.+|+||++|... .+..++..+..+. .+.
T Consensus 228 ----------------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 228 ----------------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred ----------------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 00001111 222233467899999997541 1233333333222 233
Q ss_pred EEEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCC
Q 048064 217 RILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNL-VDVDYKELSDKVINYAQG 278 (429)
Q Consensus 217 ~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G 278 (429)
-+|.||..++.+.. -.....+.++..+.++-.+++..+...... .... ...+++.+.|
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G 355 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPG 355 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence 44456665543222 123567889999999888998877643221 1111 3346666655
No 169
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00046 Score=69.28 Aligned_cols=163 Identities=20% Similarity=0.211 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
....|.|.|+.|+|||+|++++++.+..+..+.+-+..+.. .....+..+++.+..- +.+.+...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~--l~~~~~e~iQk~l~~v-------------fse~~~~~ 494 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCST--LDGSSLEKIQKFLNNV-------------FSEALWYA 494 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechh--ccchhHHHHHHHHHHH-------------HHHHHhhC
Confidence 56789999999999999999999988754333332322322 2123355555444332 23445667
Q ss_pred cEEEEecCCCCHHH------------HHHHhccC----CC-CCCCCE--EEEEeCChhhh-----hhcCCCeEEEcCCCC
Q 048064 188 KVLIVLDDVTCLNQ------------IESLVGSL----DR-LLPESR--ILITTRNKQVL-----RNCHINQIYEMKGLG 243 (429)
Q Consensus 188 ~~LlVlDdv~~~~~------------~~~l~~~l----~~-~~~~~~--iiiTtR~~~~~-----~~~~~~~~~~l~~L~ 243 (429)
+-++||||++.... .+.+...+ .. ...+.+ +|.|.....-. ...-...+..++++.
T Consensus 495 PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 495 PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 89999999963321 11111111 11 122333 44454433211 111234567899999
Q ss_pred HHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHH
Q 048064 244 DDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILG 287 (429)
Q Consensus 244 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~~ 287 (429)
..+-.++++... ...... ...+...-+..+|+| .|.-+.++.
T Consensus 575 ~~~R~~IL~~~~-s~~~~~-~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 575 VTRRKEILTTIF-SKNLSD-ITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred hhHHHHHHHHHH-Hhhhhh-hhhHHHHHHHHhcCCccchhHHHHH
Confidence 988888876654 222211 122233447777776 455554443
No 170
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.0019 Score=61.40 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=83.2
Q ss_pred cccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCc---------------------ceeEEEee
Q 048064 91 ELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNF---------------------KGSCFLEN 145 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~ 145 (429)
.++|-+....++..+.. .++.+.++|++|+||||+|..+++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 35566666777776665 334599999999999999999999865332 1222221
Q ss_pred chhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeC
Q 048064 146 IREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTR 223 (429)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR 223 (429)
...... ........+.+........ ..+..-++|||+++.. +....+...+........+|++|.
T Consensus 81 ~s~~~~-~~i~~~~vr~~~~~~~~~~------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 81 PSDLRK-IDIIVEQVRELAEFLSESP------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred ccccCC-CcchHHHHHHHHHHhccCC------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 111000 0012222222222221110 0245679999999855 456777777777677888777776
Q ss_pred Ch-hhhhhc-CCCeEEEcCCCCHHHHHHH
Q 048064 224 NK-QVLRNC-HINQIYEMKGLGDDHALEL 250 (429)
Q Consensus 224 ~~-~~~~~~-~~~~~~~l~~L~~~ea~~L 250 (429)
.. .+.+.+ +....+++.+.+..+....
T Consensus 148 ~~~~il~tI~SRc~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 148 DPSKILPTIRSRCQRIRFKPPSRLEAIAW 176 (325)
T ss_pred ChhhccchhhhcceeeecCCchHHHHHHH
Confidence 44 333322 3345677777444444333
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.78 E-value=0.00033 Score=73.39 Aligned_cols=46 Identities=17% Similarity=0.275 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHhhc-----------CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 89 KNELVGVESRVEEIQSLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...++|.+..++.|...+. ....+.++|++|+|||++|+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568999999998888775 124688999999999999999998873
No 172
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00023 Score=71.44 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=43.7
Q ss_pred CCcccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc
Q 048064 89 KNELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNFK 138 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 138 (429)
...-+|.++..+++.+++. ..++++.+||+|+|||++|+.++..+-.+|.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4567899999999999886 6789999999999999999999998866653
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00017 Score=74.22 Aligned_cols=113 Identities=16% Similarity=0.231 Sum_probs=73.1
Q ss_pred CCcccchhhHHHHHHHhhc-----------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHH
Q 048064 89 KNELVGVESRVEEIQSLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLA 157 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 157 (429)
...++|.+..+..+.+.+. +..+....||.|||||-||++++..+-..=...+-+ +.++...
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~E------ 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYME------ 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHH------
Confidence 4578999999999998875 334677899999999999999999875332222222 2332211
Q ss_pred HHHHHHHHHHhcCCCCC---CCHHHHHHHhcCCcE-EEEecCCC--CHHHHHHHhccCCC
Q 048064 158 FLQQKLLSEVLKDVNVI---PHIDLNFRRLSCRKV-LIVLDDVT--CLNQIESLVGSLDR 211 (429)
Q Consensus 158 ~~~~~l~~~~~~~~~~~---~~~~~l~~~l~~~~~-LlVlDdv~--~~~~~~~l~~~l~~ 211 (429)
+.-.+.+.+..+.- +.-..|.+..+.+|+ +|.||+++ +++-++-|+..+..
T Consensus 563 ---kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 ---KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred ---HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 11222333332221 222337888888987 88899997 56667777766653
No 174
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.75 E-value=0.0023 Score=59.88 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 87 DSKNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
..+..|+=.......+...+...+.|.|.|++|+||||+|+.++..+.-.+
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 333445555556666777777677899999999999999999999886443
No 175
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.74 E-value=0.00066 Score=68.74 Aligned_cols=47 Identities=28% Similarity=0.508 Sum_probs=39.2
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....+++|.+..++.+...+. ....+.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 334579999999999988765 45778999999999999999988754
No 176
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.73 E-value=0.0047 Score=55.44 Aligned_cols=206 Identities=17% Similarity=0.223 Sum_probs=120.6
Q ss_pred CcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhc------CcceeEEEeechh-------------
Q 048064 90 NELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR------NFKGSCFLENIRE------------- 148 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~------------- 148 (429)
..+.++++.-..+..+.. +.+...+|||.|.||-|.+..+.+++-. +.....|......
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 347777777777777766 5789999999999999999888887533 1122233221111
Q ss_pred ---hhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcE-EEEecCCCCHH--HHHHHhccCCCCCCCCEEEE--
Q 048064 149 ---ESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKV-LIVLDDVTCLN--QIESLVGSLDRLLPESRILI-- 220 (429)
Q Consensus 149 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~--~~~~l~~~l~~~~~~~~iii-- 220 (429)
.|.....-+.+.++++..+........ ...+++ ++||-.+++.. ...++-.........+|+|+
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qie~--------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~c 164 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQIET--------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVC 164 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcchhh--------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEe
Confidence 111112223444555555444311111 112333 77787777542 33334344444467888776
Q ss_pred --EeCChhhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcC------
Q 048064 221 --TTRNKQVLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFE------ 292 (429)
Q Consensus 221 --TtR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~------ 292 (429)
|||--.... +..-.++++..+++|....+++.+-.....-+ .+++.+|+++++|+-.-.-.+...++-
T Consensus 165 ns~SriIepIr--SRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 165 NSTSRIIEPIR--SRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred cCcccchhHHh--hheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 333322222 23346889999999999999888755553322 578999999999986443333333221
Q ss_pred -----CCHHHHHHHHHHHhh
Q 048064 293 -----RKKEVWENAIKKLKN 307 (429)
Q Consensus 293 -----~~~~~~~~~l~~l~~ 307 (429)
-+..+|+.++.+...
T Consensus 241 a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccCCCCCCccHHHHHHHHHH
Confidence 134678888776543
No 177
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0006 Score=70.36 Aligned_cols=145 Identities=13% Similarity=0.182 Sum_probs=84.6
Q ss_pred CCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cc-----eeEEEeechhhhhh---cCCHH
Q 048064 89 KNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FK-----GSCFLENIREESQK---AGGLA 157 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~---~~~~~ 157 (429)
-++.+||+.|++++.+.|. ...--.++|.+|+|||+++.-++.++... -+ ..++-.++...-.. ...+.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFE 248 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFE 248 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHH
Confidence 3579999999999999998 33445678999999999999999986443 21 12222222111000 01112
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHhc-CCcEEEEecCCCCH-----------HHHHHHhccCCCCCCC-CEEE-EEeC
Q 048064 158 FLQQKLLSEVLKDVNVIPHIDLNFRRLS-CRKVLIVLDDVTCL-----------NQIESLVGSLDRLLPE-SRIL-ITTR 223 (429)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~-~~ii-iTtR 223 (429)
.- +..+...+. ..+++|++|.++.. +...-+-+.|. .| .++| .||-
T Consensus 249 eR-----------------lk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA---RGeL~~IGATT~ 308 (786)
T COG0542 249 ER-----------------LKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA---RGELRCIGATTL 308 (786)
T ss_pred HH-----------------HHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh---cCCeEEEEeccH
Confidence 22 222222232 34899999999633 12222333333 23 3444 4554
Q ss_pred Chhh------hhhcCCCeEEEcCCCCHHHHHHHHHH
Q 048064 224 NKQV------LRNCHINQIYEMKGLGDDHALELFIR 253 (429)
Q Consensus 224 ~~~~------~~~~~~~~~~~l~~L~~~ea~~L~~~ 253 (429)
++.- +......+.+.+...+.+++..++.-
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 4421 11113467888999999999988864
No 178
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0037 Score=63.22 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=94.3
Q ss_pred CCCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ 151 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 151 (429)
..-....|.+...+.+.+... ..+.+.++|++|+|||.||++++......|-.... .....
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~----~~l~s 314 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG----SELLS 314 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----HHHhc
Confidence 333455566666665555443 44579999999999999999999965544432111 11100
Q ss_pred -hcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH-------------HHHHHHhccCCCCCC--C
Q 048064 152 -KAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL-------------NQIESLVGSLDRLLP--E 215 (429)
Q Consensus 152 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~--~ 215 (429)
......+..+.+ +....+..+.+|++|+++.. .....++..+..... +
T Consensus 315 k~vGesek~ir~~----------------F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 315 KWVGESEKNIREL----------------FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred cccchHHHHHHHH----------------HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 011112222222 22233467899999999533 233444444433333 3
Q ss_pred CEEEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC
Q 048064 216 SRILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG 278 (429)
Q Consensus 216 ~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 278 (429)
..||-||..+..... ......+.+++-+.++..++|..+........ ...-....+++.+.|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~-~~~~~~~~l~~~t~~ 445 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPL-AEDVDLEELAEITEG 445 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcc-hhhhhHHHHHHHhcC
Confidence 334445554433321 13356788999999999999998874333220 111224455555555
No 179
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.71 E-value=0.002 Score=64.89 Aligned_cols=165 Identities=13% Similarity=0.173 Sum_probs=104.3
Q ss_pred CCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhc-----CcceeEE--Eeechhhhhhc
Q 048064 88 SKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISR-----NFKGSCF--LENIREESQKA 153 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~-----~f~~~~~--~~~~~~~~~~~ 153 (429)
.+..+-+|+.+..+|...+. ....+-|.|.+|+|||+.+..+.+.++. ..+...| +.... .
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~-----l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR-----L 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee-----e
Confidence 45677899999999999886 3457889999999999999999996541 1222222 22111 3
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCCCHHHHHHHhc-----CCcEEEEecCCCCHHH--HHHHhccCCCC-CCCCEEEEEe--
Q 048064 154 GGLAFLQQKLLSEVLKD-VNVIPHIDLNFRRLS-----CRKVLIVLDDVTCLNQ--IESLVGSLDRL-LPESRILITT-- 222 (429)
Q Consensus 154 ~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~l~~~l~~~-~~~~~iiiTt-- 222 (429)
.....+...|+..+... ......++.+..+.. .+..++++|++|.+-. -+-+-..+.|. .++++++|-+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 45778888888887766 334444454555543 3568999999975532 12222223332 4677755422
Q ss_pred CChhhhhhc--------CCCeEEEcCCCCHHHHHHHHHHhhhc
Q 048064 223 RNKQVLRNC--------HINQIYEMKGLGDDHALELFIRHAFR 257 (429)
Q Consensus 223 R~~~~~~~~--------~~~~~~~l~~L~~~ea~~L~~~~~~~ 257 (429)
...++...+ -....+.+.|.+.++-.++...++.+
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcc
Confidence 222222221 12356789999999999998887743
No 180
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.70 E-value=5.6e-05 Score=62.25 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=58.3
Q ss_pred cchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe-echhhhhhcCCHHHHHHHHHHHH
Q 048064 93 VGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE-NIREESQKAGGLAFLQQKLLSEV 167 (429)
Q Consensus 93 vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 167 (429)
||....++++.+.+. ....|.|+|++|+||+++|+.+...-.... ..++. ++.. .. ..++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~--~~~~~~~~~~-----~~-----~~~l~~- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRAN--GPFIVIDCAS-----LP-----AELLEQ- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCC--S-CCCCCHHC-----TC-----HHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccC--CCeEEechhh-----Cc-----HHHHHH-
Confidence 466667777777665 677899999999999999998777533221 11111 1111 11 112221
Q ss_pred hcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--HHHHHhccCCC-CCCCCEEEEEeCCh
Q 048064 168 LKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--QIESLVGSLDR-LLPESRILITTRNK 225 (429)
Q Consensus 168 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~-~~~~~~iiiTtR~~ 225 (429)
. +.-.|+|+|++... ....+...+.. ...+.|+|.||..+
T Consensus 68 ----------------a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 ----------------A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ----------------C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ----------------c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1 34478899998553 34444444432 15678999998765
No 181
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.70 E-value=0.00023 Score=67.49 Aligned_cols=98 Identities=20% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCccee-EEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCC
Q 048064 99 VEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGS-CFLENIREESQKAGGLAFLQQKLLSEVLKDVNVI 174 (429)
Q Consensus 99 ~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (429)
..++.+.+. ..+.++|+|++|+|||||++.+++.+..+.+.. +++..+.+. ......+.+.+...+.....+.
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCC
Confidence 344666665 667889999999999999999999887655333 344334332 3456666666665444332111
Q ss_pred CCHHH---------HHHHh--cCCcEEEEecCCCCH
Q 048064 175 PHIDL---------NFRRL--SCRKVLIVLDDVTCL 199 (429)
Q Consensus 175 ~~~~~---------l~~~l--~~~~~LlVlDdv~~~ 199 (429)
..... ..+++ .+++++||+|++...
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11111 12222 478999999999644
No 182
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.68 E-value=0.00054 Score=59.70 Aligned_cols=49 Identities=29% Similarity=0.330 Sum_probs=41.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..-.++||-++-+++|.-... ..+.+.|.||||+||||-+..+++.+..
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 334679999999998887776 7788999999999999999999987643
No 183
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.0012 Score=63.06 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+++|+|+|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45789999999999999999999887644
No 184
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.66 E-value=0.00028 Score=75.37 Aligned_cols=128 Identities=12% Similarity=0.136 Sum_probs=73.4
Q ss_pred CCcccchhhHHHHHHHhhc-----------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHH
Q 048064 89 KNELVGVESRVEEIQSLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLA 157 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 157 (429)
...++|.+..++.+...+. ....+.++||+|+|||+||+.+++.+...-...+ ..+..+... .....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~-~~d~s~~~~-~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMI-RLDMSEYME-KHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceE-EEEchhccc-cccHH
Confidence 4678999999999988774 1235679999999999999999997643322222 222322111 11111
Q ss_pred HHHHHHHHHHhcC--CCCCCCHHHHHHHhcCCc-EEEEecCCC--CHHHHHHHhccCCCC-----------CCCCEEEEE
Q 048064 158 FLQQKLLSEVLKD--VNVIPHIDLNFRRLSCRK-VLIVLDDVT--CLNQIESLVGSLDRL-----------LPESRILIT 221 (429)
Q Consensus 158 ~~~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~-~LlVlDdv~--~~~~~~~l~~~l~~~-----------~~~~~iiiT 221 (429)
.+ . +.. .........+...++.++ -+++||+++ +.+..+.|+..+... ..++.||+|
T Consensus 586 ~l----~---g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 KL----I---GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred Hh----c---CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11 1 111 011112223556666665 589999997 444556666555431 134456777
Q ss_pred eCCh
Q 048064 222 TRNK 225 (429)
Q Consensus 222 tR~~ 225 (429)
|...
T Consensus 659 sn~g 662 (821)
T CHL00095 659 SNLG 662 (821)
T ss_pred CCcc
Confidence 7654
No 185
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0007 Score=65.84 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=79.2
Q ss_pred CcccchhhHH---HHHHHhhc-----------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCC
Q 048064 90 NELVGVESRV---EEIQSLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGG 155 (429)
Q Consensus 90 ~~~vGR~~~~---~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 155 (429)
.+.-|-|+.. +++.++|. =++-|.++||+|.|||-||++++-... ..+|....++.....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~----VPFF~~sGSEFdEm~-- 377 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG----VPFFYASGSEFDEMF-- 377 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC----CCeEeccccchhhhh--
Confidence 4566776554 45555554 256799999999999999999987643 223333222211100
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHH-HhcCCcEEEEecCCCCH-------------HHHHHHhccCCCCCCCCEEEE-
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFR-RLSCRKVLIVLDDVTCL-------------NQIESLVGSLDRLLPESRILI- 220 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~~~~~~iii- 220 (429)
- ......+.+|.. .-..-+++|+||++|.. ..+..++..+..+..+.-|||
T Consensus 378 ---------V-----GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvi 443 (752)
T KOG0734|consen 378 ---------V-----GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVI 443 (752)
T ss_pred ---------h-----cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEE
Confidence 0 001111222222 23456899999999633 134556666665554433333
Q ss_pred -EeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 221 -TTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 221 -TtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
.|.-++.+.. + .....+.++.-+-.--.++|..+.
T Consensus 444 gATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 444 GATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred eccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 4444433322 1 234456666666666666666554
No 186
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.63 E-value=0.0011 Score=64.89 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=29.7
Q ss_pred hHHHHHHHhhc---------CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 97 SRVEEIQSLLG---------AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 97 ~~~~~l~~~l~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.-+.++..||. +.+++.|+||+|+||||.++.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34556666664 67799999999999999999988864
No 187
>PRK04296 thymidine kinase; Provisional
Probab=97.62 E-value=0.00012 Score=63.75 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=59.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEee-chhhhhhcCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHh--
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLEN-IREESQKAGGLAFLQQKLLSEVLKDVN--VIPHIDLNFRRL-- 184 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~~l-- 184 (429)
.++.|+|+.|.||||++..++.+...+...++++.. ... ..... .+...++.... .......+...+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~----~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD----RYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc----cccCC----cEecCCCCcccceEeCChHHHHHHHHh
Confidence 478899999999999999999988665444443321 011 01111 11222221111 112233333332
Q ss_pred -cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 185 -SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 185 -~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
.++.-+||+|++.-. +++.++...+. ..|..||+|.++.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 235569999999643 44555554433 4678899999875
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.62 E-value=0.00032 Score=62.69 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
.+-.++|.|.+|+|||||+..+.......|..++.+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 3447899999999999999999999988997666554
No 189
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0011 Score=65.57 Aligned_cols=129 Identities=18% Similarity=0.262 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~ 186 (429)
.+.-|.+|||+|+|||-||+++++...-+|-.+ . +.+ ++....++ ....+.. +.+.-.+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV------K-------GPE-----LlNkYVGE--SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISV------K-------GPE-----LLNKYVGE--SERAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEee------c-------CHH-----HHHHHhhh--HHHHHHHHHHHhhcC
Confidence 456799999999999999999999876665311 1 111 11111111 0011112 2333345
Q ss_pred CcEEEEecCCCCHH-------------HHHHHhccCCCCC--CCCEEEEEeCChhhh-----hhcCCCeEEEcCCCCHHH
Q 048064 187 RKVLIVLDDVTCLN-------------QIESLVGSLDRLL--PESRILITTRNKQVL-----RNCHINQIYEMKGLGDDH 246 (429)
Q Consensus 187 ~~~LlVlDdv~~~~-------------~~~~l~~~l~~~~--~~~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~e 246 (429)
.+++|+||++|... ....|+..+.... .|.-||-.|..+++. ..-......-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 79999999996431 2455665554332 344455555444332 222334566688888899
Q ss_pred HHHHHHHhhh
Q 048064 247 ALELFIRHAF 256 (429)
Q Consensus 247 a~~L~~~~~~ 256 (429)
-.+++....-
T Consensus 684 R~~ILK~~tk 693 (802)
T KOG0733|consen 684 RVAILKTITK 693 (802)
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 190
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0032 Score=56.99 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=91.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec--hhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI--REES 150 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~ 150 (429)
..-..+-|.+...+.|.+..- .-+-|.++||+|.|||.||++++-..-. .|++.. .-.+
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFSvSSSDLvS 204 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSSSDLVS 204 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEEeehHHHHH
Confidence 445678899999998888653 3467999999999999999999986532 222211 1111
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHH---------HHH----HHhccCC---CCC
Q 048064 151 QKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLN---------QIE----SLVGSLD---RLL 213 (429)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~----~l~~~l~---~~~ 213 (429)
........+.+. +.+.. .+++-+|++|+++... ..+ +|+-... ...
T Consensus 205 KWmGESEkLVkn-----------------LFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 205 KWMGESEKLVKN-----------------LFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred HHhccHHHHHHH-----------------HHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 111112222222 22222 3588999999996331 111 2222222 112
Q ss_pred CCCEEEEEeCChhhhhhc---CCCeEEEcCCCCHHHHH-HHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 214 PESRILITTRNKQVLRNC---HINQIYEMKGLGDDHAL-ELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~~~~---~~~~~~~l~~L~~~ea~-~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
.|.-|+-.|..+-++... .....|-++ |.+..|+ .+|.-+++.. +......-.+++..+++|.-
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIP-LPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIP-LPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceecc-CCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence 344455577766544331 123334343 4444444 5566565332 22223344667777777753
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.60 E-value=0.00024 Score=60.41 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=32.2
Q ss_pred ccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 92 LVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 92 ~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
++|.+..++++.+.+. ....|.|+|++|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4677778888777665 56778999999999999999998843
No 192
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.0022 Score=56.27 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=44.6
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
..-..++|-+...+.|.+--. ...-|.++|..|+|||+|++++.+.+.......+-+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV 119 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEV 119 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEE
Confidence 344678999988888876433 556799999999999999999999988776654333
No 193
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.59 E-value=0.00038 Score=61.12 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=60.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe-echhhhhhcCCHHHHHHHHHHHHhcCCCCCCCH-HHHHHHhcCC
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE-NIREESQKAGGLAFLQQKLLSEVLKDVNVIPHI-DLNFRRLSCR 187 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~l~~~l~~~ 187 (429)
..+.|+|++|+||||++..++..+.......++.. +-.+. . .... ..+..+.. ........ +.+...++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~-~-~~~~----~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEF-V-HESK----RSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccc-c-ccCc----cceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 57899999999999999998887765443333332 11110 0 0000 00000000 01111222 3367777778
Q ss_pred cEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhh
Q 048064 188 KVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQV 227 (429)
Q Consensus 188 ~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 227 (429)
+-++++|++.+.+....++... ..|..++.|+-....
T Consensus 75 pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 8899999998777665544432 234457777665544
No 194
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0029 Score=56.15 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=35.5
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++=|-+..+++|.+.+- .++-+..+||+|.|||-+|++.+.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 456677888888877653 56789999999999999999988764
No 195
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.55 E-value=0.00053 Score=62.52 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCHHH-
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHIDL- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~- 179 (429)
..+.++|.|.+|+|||||++.+++++..+|...+++..+.+.. .....+.+.+...-... .........
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~---~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERT---REGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 6788999999999999999999999987887777776665432 23444444444321110 011111111
Q ss_pred --------HHHHh---cCCcEEEEecCCCCHH
Q 048064 180 --------NFRRL---SCRKVLIVLDDVTCLN 200 (429)
Q Consensus 180 --------l~~~l---~~~~~LlVlDdv~~~~ 200 (429)
+.+++ .++++|+++||+-...
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a 176 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFT 176 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHHH
Confidence 33344 3789999999985443
No 196
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.0014 Score=62.31 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
+.++++|+|+.|+||||++..++..+...-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 567899999999999999999998765443333333
No 197
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0033 Score=55.41 Aligned_cols=145 Identities=17% Similarity=0.354 Sum_probs=81.7
Q ss_pred cccc-hhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 91 ELVG-VESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 91 ~~vG-R~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
+++| .+..++++.+.+. .++-+.++|++|.|||-||+.++++. .+.|+. ++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg------ 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG------ 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech------
Confidence 4454 5677777777664 56789999999999999999999763 233332 221
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHH-HhcCCcEEEEecCCCCHH-------------H---HHHHhccCCCC--CCC
Q 048064 155 GLAFLQQKLLSEVLKDVNVIPHIDLNFR-RLSCRKVLIVLDDVTCLN-------------Q---IESLVGSLDRL--LPE 215 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~-------------~---~~~l~~~l~~~--~~~ 215 (429)
..-+++.+... ..-+.++.- .-..-+-+|+.|++++.. . .-+++..+..+ .++
T Consensus 215 -selvqk~igeg-------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 215 -SELVQKYIGEG-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred -HHHHHHHhhhh-------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 11112211111 000111111 123457899999986441 1 12233333322 356
Q ss_pred CEEEEEeCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 216 SRILITTRNKQVLR-----NCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 216 ~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
.+||..|..-+++. .-.....++.++-+++.-.+++.-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 67777554333322 22345678888888888888886654
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.53 E-value=0.00032 Score=59.11 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=26.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
++.|+|++|+||||++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998765444455544
No 199
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.53 E-value=0.0034 Score=59.67 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=33.6
Q ss_pred ccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 92 LVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 92 ~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
++|....++++.+.+. ....|.|+|++|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4677777777777665 56679999999999999999887653
No 200
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.52 E-value=0.0036 Score=61.39 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+.++.++|++|+||||++..++..+...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 5689999999999999999999887654
No 201
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.49 E-value=0.0064 Score=57.80 Aligned_cols=29 Identities=17% Similarity=0.458 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.+|+|.|.=|+|||++.+.+.+.+...
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 46689999999999999999999988776
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=9.5e-05 Score=59.26 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 203
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.48 E-value=0.0068 Score=57.59 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=37.0
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..++|+...++++.+.+. ....|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 468999999999888776 5667999999999999999988753
No 204
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.46 E-value=5.1e-05 Score=62.55 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHh
Q 048064 112 LGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 205
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0032 Score=59.09 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=47.8
Q ss_pred hHHHHHHHhhhhhccCCccccCCCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHH
Q 048064 65 ESELIKKVVNDILEKLPKVVPCDSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIF 130 (429)
Q Consensus 65 e~~~i~~i~~~~~~~~~~~~p~~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~ 130 (429)
+..+.+.+-+++...-|. ..-+++.|.++..+-|.+... .-+-|.++||+|.|||-||++++
T Consensus 191 d~~Lve~lerdIl~~np~----ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 191 DADLVEALERDILQRNPN----IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred hHHHHHHHHHHHhccCCC----cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHH
Confidence 445555555555544333 445778898888888877653 44679999999999999999999
Q ss_pred HHhh
Q 048064 131 NRIS 134 (429)
Q Consensus 131 ~~~~ 134 (429)
-...
T Consensus 267 TEc~ 270 (491)
T KOG0738|consen 267 TECG 270 (491)
T ss_pred Hhhc
Confidence 8764
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.46 E-value=0.00055 Score=59.75 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=59.5
Q ss_pred hhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh--hcCcceeEEEeechhhhhh-cCC---HHH----HHHHHHH
Q 048064 96 ESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI--SRNFKGSCFLENIREESQK-AGG---LAF----LQQKLLS 165 (429)
Q Consensus 96 ~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~-~~~---~~~----~~~~l~~ 165 (429)
..+-+...+.+....++.+.|++|+|||.||.+.+-+. ..+|...++....-..... ... ... ....+..
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d 85 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYD 85 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHH
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 34444555555577899999999999999999988653 3456666665433221000 000 111 1111111
Q ss_pred HHhcCCCCCCCHHHHH----------HHhcCC---cEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 166 EVLKDVNVIPHIDLNF----------RRLSCR---KVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 166 ~~~~~~~~~~~~~~l~----------~~l~~~---~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
.+..- -....++.+. .+++++ ..++|+|++.+. .++..++.. .+.+|++|++.-..
T Consensus 86 ~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 86 ALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 11111 1122233322 234443 469999999755 466666543 57899999987543
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.45 E-value=0.00017 Score=68.12 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=40.5
Q ss_pred CcccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 90 NELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..++|.++.++++.+++. ..++++|+|++|+||||||..+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 379999999999999885 3578999999999999999999997643
No 208
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.44 E-value=0.00032 Score=64.36 Aligned_cols=101 Identities=18% Similarity=0.134 Sum_probs=60.6
Q ss_pred HHHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-CCCCC
Q 048064 98 RVEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-VNVIP 175 (429)
Q Consensus 98 ~~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 175 (429)
.++.+..++. ....+.|.|+.|+||||++..+...+...-...+.+.+..+... .+. .+..-. .....
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~~~~~~~ 137 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVNEKAGLT 137 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeCCcCCcC
Confidence 4445555555 66789999999999999999988876543223344432222110 000 000000 11112
Q ss_pred CHHHHHHHhcCCcEEEEecCCCCHHHHHHHhcc
Q 048064 176 HIDLNFRRLSCRKVLIVLDDVTCLNQIESLVGS 208 (429)
Q Consensus 176 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 208 (429)
..+.+...++..+-.++++++.+.+....++..
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 233477788888999999999988876655444
No 209
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.44 E-value=0.0048 Score=62.98 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCCCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.....++|....++++.+.+. ....|.|+|++|+|||++|+.+.+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 445789999999999988776 556789999999999999999987643
No 210
>PHA00729 NTP-binding motif containing protein
Probab=97.43 E-value=0.00047 Score=60.94 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+...++|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455799999999999999999999864
No 211
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.41 E-value=0.00039 Score=69.97 Aligned_cols=73 Identities=26% Similarity=0.351 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh--c
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL--S 185 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l--~ 185 (429)
..++..++|++|.||||||.-++++.. ..+.=.|++. ......+-..+...+... ..+ .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----YsVvEINASD----eRt~~~v~~kI~~avq~~-----------s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----YSVVEINASD----ERTAPMVKEKIENAVQNH-----------SVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----ceEEEecccc----cccHHHHHHHHHHHHhhc-----------cccccC
Confidence 457899999999999999999998742 2222223322 334444444444444333 112 2
Q ss_pred CCcEEEEecCCCCH
Q 048064 186 CRKVLIVLDDVTCL 199 (429)
Q Consensus 186 ~~~~LlVlDdv~~~ 199 (429)
+++..||+|++|-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 68999999999843
No 212
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.41 E-value=0.00072 Score=64.71 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=64.4
Q ss_pred HHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe-echhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHH
Q 048064 101 EIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE-NIREESQKAGGLAFLQQKLLSEVLKDVNVIPHID 178 (429)
Q Consensus 101 ~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (429)
.+.+++. ....+.|+|++|+||||++..+...+.......++.. +-.+.. .... ..+..+.........-.+
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~--~~~~----~~~i~q~evg~~~~~~~~ 186 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV--HRNK----RSLINQREVGLDTLSFAN 186 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh--ccCc----cceEEccccCCCCcCHHH
Confidence 3444444 5689999999999999999999887765444444432 111100 0000 000000000001111223
Q ss_pred HHHHHhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 179 LNFRRLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 179 ~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
.+...++..+-+|++|++.+.+.....+... ..|..++.|.-..
T Consensus 187 ~l~~~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred HHHHhhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 3777888899999999998887766544432 2344455555543
No 213
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.40 E-value=0.012 Score=59.64 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=40.4
Q ss_pred CCCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 88 SKNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
....++|+...++++.+.+. ....|.|+|++|+|||++|+.+.+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34679999999999888876 677899999999999999999988643
No 214
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0078 Score=61.32 Aligned_cols=97 Identities=25% Similarity=0.336 Sum_probs=57.0
Q ss_pred cccCCCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechh
Q 048064 83 VVPCDSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIRE 148 (429)
Q Consensus 83 ~~p~~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 148 (429)
..|...-+++=|.++...+|.+-+. +..-|.+||++|+|||-+|++++-...-. |++.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-----FlSV--- 736 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-----FLSV--- 736 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-----EEee---
Confidence 3442333556667776777776554 34569999999999999999999765322 2321
Q ss_pred hhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH
Q 048064 149 ESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL 199 (429)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~ 199 (429)
.+.+-+-.-+ .....++.++.+.. ...+++|++|++|+.
T Consensus 737 -----KGPELLNMYV-------GqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 737 -----KGPELLNMYV-------GQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -----cCHHHHHHHh-------cchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 1111111111 11122333333333 448999999999755
No 215
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.044 Score=51.13 Aligned_cols=162 Identities=10% Similarity=0.125 Sum_probs=92.2
Q ss_pred HHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhc---------Ccc-eeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 100 EEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISR---------NFK-GSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 100 ~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~---------~f~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
+.+.+.+. -.++..++|+.|+||+++|..+++.+-. ..+ ...++ +.... ......+. .+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-d~~g~---~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-DIFDK---DLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-ccCCC---cCCHHHHH-HHHHH
Confidence 34444443 3567789999999999999999998621 112 12222 11010 11111111 12221
Q ss_pred HhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCC-hhhhhh-cCCCeEEEcCCC
Q 048064 167 VLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRN-KQVLRN-CHINQIYEMKGL 242 (429)
Q Consensus 167 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~-~~~~~~~~l~~L 242 (429)
+.-. ..-.+.+-++|+|+++.. .....++..+...++++.+|++|.+ ..+++. .+....+++.++
T Consensus 81 ~~~~-----------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 81 LYFS-----------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred hccC-----------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 1110 000146678999999754 4577888888877777777765544 444443 345678999999
Q ss_pred CHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 243 GDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 243 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
+.++..+.+.... .+ .+.+..++..++|.=-|+..
T Consensus 150 ~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 9999998876541 11 13345555556652234443
No 216
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.33 E-value=0.0018 Score=54.15 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=60.8
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHH-----hcCC--CCCCCHH----
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEV-----LKDV--NVIPHID---- 178 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~--~~~~~~~---- 178 (429)
..|-|++..|.||||+|...+-+...+-..+.++--+.... ..+-....+.+ ..+ +... ......+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 57889999999999999999988766644444433222210 11222222222 000 0000 0000111
Q ss_pred ------HHHHHhcC-CcEEEEecCCCCH-----HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 179 ------LNFRRLSC-RKVLIVLDDVTCL-----NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 179 ------~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
...+.+.. .-=|||||++-.. -..+.+...+....++..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 13333333 3459999999322 23344555555456678899999986
No 217
>PRK06696 uridine kinase; Validated
Probab=97.31 E-value=0.00045 Score=61.92 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=33.0
Q ss_pred hhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 95 VESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 95 R~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
|.+.+++|.+.+. .+.+|+|.|.+|+||||||+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5555666666553 56789999999999999999999988544
No 218
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.31 E-value=0.0074 Score=56.77 Aligned_cols=48 Identities=25% Similarity=0.186 Sum_probs=33.9
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCCCCC-hhHHHHHHHHHHHhCCChHHH
Q 048064 236 IYEMKGLGDDHALELFIRHAFRQNLVD-VDYKELSDKVINYAQGVPLAL 283 (429)
Q Consensus 236 ~~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~~~~i~~~~~G~PLai 283 (429)
++++++++.+|+..++.-..-.+-... ...+...+++.-..+|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764333222 223445666777779999754
No 219
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0097 Score=60.15 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=92.0
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
.++-|..+..+.|.+.+. -..-|.++|++|+|||.||.+++....- -|+. + .
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-----~fis-v-------K 733 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-----RFIS-V-------K 733 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-----eEEE-e-------c
Confidence 355566666666666654 2335899999999999999998875321 1222 1 2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHH-HHhcCCcEEEEecCCCCHH-------------HHHHHhccCCCC--CCCCEE
Q 048064 155 GLAFLQQKLLSEVLKDVNVIPHIDLNF-RRLSCRKVLIVLDDVTCLN-------------QIESLVGSLDRL--LPESRI 218 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~--~~~~~i 218 (429)
+.+-+.+-+.. ....+..+. +.-..++++|++|++|+.. -...++..+... ..|.-|
T Consensus 734 GPElL~KyIGa-------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 734 GPELLSKYIGA-------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred CHHHHHHHhcc-------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 22222221111 112233333 3344589999999997542 345566555421 234445
Q ss_pred EE-EeCChhhhhh----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHH
Q 048064 219 LI-TTRNKQVLRN----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLA 282 (429)
Q Consensus 219 ii-TtR~~~~~~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLa 282 (429)
+. |||-.-+-+. -...+.+--+.-++.|-.++|+...-.-..+. .-..+.++.+++|..-|
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCchh
Confidence 54 6664422222 12233344455667777788766542211111 12356778888887654
No 220
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.29 E-value=0.0041 Score=63.00 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=37.0
Q ss_pred CCCCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.....++|....++++.+.+. ....|.|+|.+|+||+++|+.+...
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 344679999998888877664 5566899999999999999996553
No 221
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00036 Score=57.31 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=25.8
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcC-cce
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRN-FKG 139 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~ 139 (429)
--++|.|++|+||||+++.+++.++++ |..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 358999999999999999999988766 543
No 222
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.26 E-value=0.0015 Score=57.17 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=57.1
Q ss_pred HHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHH
Q 048064 100 EEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHID 178 (429)
Q Consensus 100 ~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (429)
+.+...+. +.+++.|.|++|+||||++..+...+...-..+++..... .....+....... ...+.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~----------~Aa~~L~~~~~~~---a~Ti~ 74 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN----------KAAKELREKTGIE---AQTIH 74 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH----------HHHHHHHHHHTS----EEEHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH----------HHHHHHHHhhCcc---hhhHH
Confidence 33444444 5679999999999999999998887766533333333111 1122222222111 11111
Q ss_pred HHHHHh----------cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 179 LNFRRL----------SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 179 ~l~~~l----------~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
.+.... ....-+||+|++... ..+..++.... ..++++|+.--..
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 75 SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 111000 123359999999744 46666666655 2577877765433
No 223
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0053 Score=57.36 Aligned_cols=51 Identities=25% Similarity=0.389 Sum_probs=40.2
Q ss_pred CCcccchhhHHHHHHHhhc----------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcce
Q 048064 89 KNELVGVESRVEEIQSLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKG 139 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 139 (429)
..++-|-+...+++.+... .++-|.++||+|+|||-||++++.+....|-+
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 3556677777777776543 56779999999999999999999998777654
No 224
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.26 E-value=0.018 Score=60.74 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=37.7
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|+...++.+.+.+. ....|.|+|++|+|||++|+.+.+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999998877665 56689999999999999999998754
No 225
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0098 Score=57.20 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
.|--.++||||.|||++..++++.+. |+ ++--.+... ..+.. ++.++... ..+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v---~~n~d--Lr~LL~~t------------------~~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEV---KLDSD--LRHLLLAT------------------PNK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeeccc---cCcHH--HHHHHHhC------------------CCC
Confidence 35689999999999999999999763 32 222222111 11111 23333221 235
Q ss_pred EEEEecCCCCHHH--------------------HHHHhccCC---CCCCCCEEEE-EeCChhhhhh-----cCCCeEEEc
Q 048064 189 VLIVLDDVTCLNQ--------------------IESLVGSLD---RLLPESRILI-TTRNKQVLRN-----CHINQIYEM 239 (429)
Q Consensus 189 ~LlVlDdv~~~~~--------------------~~~l~~~l~---~~~~~~~iii-TtR~~~~~~~-----~~~~~~~~l 239 (429)
-+|||.|+|..-. +.-|+..+. ..+.+-|||| ||...+-+.. -...-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 6888888864311 111222222 2222346555 7765533221 123456778
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 240 KGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 240 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
..=+.+....|+.+.+.... +. .+..+|.+...+.-+.=..++..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 88889999999988875433 22 234445444445433333444433
No 226
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.22 E-value=0.0049 Score=61.86 Aligned_cols=43 Identities=35% Similarity=0.480 Sum_probs=34.3
Q ss_pred cccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 91 ELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+++--.+-++++..||. ..+++.++||+|+||||.++.+++.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 34444566777888876 35789999999999999999999976
No 227
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0022 Score=57.03 Aligned_cols=51 Identities=27% Similarity=0.554 Sum_probs=38.2
Q ss_pred cccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec
Q 048064 91 ELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI 146 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 146 (429)
+.=|=.++++.|.+... .++-|.++|++|.|||-+|++++++. ..+|+..+
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 44566677777776543 56789999999999999999999874 45555533
No 228
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.19 E-value=0.0026 Score=59.13 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999877543
No 229
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.18 E-value=0.00067 Score=59.28 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
++++.++|+.|+||||.+..++.++..+-..+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 46899999999999999999998876663333444
No 230
>PRK14974 cell division protein FtsY; Provisional
Probab=97.18 E-value=0.015 Score=55.15 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
++.++.++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877654
No 231
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.16 E-value=0.0041 Score=53.57 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH--------------HHHHHHhcCCCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ--------------KLLSEVLKDVNV 173 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~~~~ 173 (429)
....++|.|+.|.|||||++.++..... ....+++... .... . .....+ .+...+....+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~--~-~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV-PVSD--L-EKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE-EHHH--H-HHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 6789999999999999999999875432 2333443311 0000 0 000000 000000000000
Q ss_pred CCCHH--HHHHHhcCCcEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhcCCCeEEEc
Q 048064 174 IPHID--LNFRRLSCRKVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRNKQVLRNCHINQIYEM 239 (429)
Q Consensus 174 ~~~~~--~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 239 (429)
...+ .+.+.+-.++-++++|+.. +....+.+...+.....+..||++|.+...... ..+.+.+
T Consensus 102 -G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 102 -GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred -HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 0001 1566667788899999984 333333333333222235678888887766543 3444444
No 232
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.16 E-value=0.0023 Score=61.56 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=52.4
Q ss_pred HHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCC-----
Q 048064 101 EIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDV----- 171 (429)
Q Consensus 101 ~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 171 (429)
.|.+.|. ...++.|.|++|+|||||+.+++..+......++|+. .. .....+... ...++...
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs-~E------Es~~qi~~R-a~rlg~~~~~l~l 141 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS-GE------ESPEQIKLR-ADRLGISTENLYL 141 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-CC------cCHHHHHHH-HHHcCCCcccEEE
Confidence 4444444 5678999999999999999999988766544555554 21 122222211 12222111
Q ss_pred CCCCCHHHHHHHhc-CCcEEEEecCCC
Q 048064 172 NVIPHIDLNFRRLS-CRKVLIVLDDVT 197 (429)
Q Consensus 172 ~~~~~~~~l~~~l~-~~~~LlVlDdv~ 197 (429)
.....++.+...+. .++-++|+|.+.
T Consensus 142 ~~e~~le~I~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 142 LAETNLEDILASIEELKPDLVIIDSIQ 168 (372)
T ss_pred EccCcHHHHHHHHHhcCCcEEEEcchH
Confidence 11234455555544 366799999984
No 233
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.15 E-value=0.016 Score=56.56 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+.+|.++|++|+||||++..++..++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999877654
No 234
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0066 Score=55.39 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
.++-|--....++.+.+. .+..++|||++|.|||-+|+.++..+.-+|
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 345555566666666553 466799999999999999999999876554
No 235
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00045 Score=58.79 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+.|.|+|++|+||||||+.+++.+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999864
No 236
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0037 Score=59.85 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+++++|++|+||||++..++.+....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999876544
No 237
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.07 E-value=0.024 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+.++.++|++|+||||++..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998865
No 238
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.04 E-value=0.0027 Score=58.56 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
..++++++|++|+||||++..++..+....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 457899999999999999999998876553
No 239
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.03 E-value=0.0013 Score=62.97 Aligned_cols=102 Identities=13% Similarity=0.050 Sum_probs=57.1
Q ss_pred HHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEeechhhhhhcCCHHHHHH--HHHHHHhcCCCCCC
Q 048064 102 IQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLENIREESQKAGGLAFLQQ--KLLSEVLKDVNVIP 175 (429)
Q Consensus 102 l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 175 (429)
+.+++. ....|+|+|+.|+||||++..++..+....+ ..+.+.+..+ ........ ....+.........
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-----~~~~~~~~~~~~v~Q~~v~~~~~~ 200 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-----FVYDEIETISASVCQSEIPRHLNN 200 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-----EeccccccccceeeeeeccccccC
Confidence 334444 6789999999999999999999987754332 2222221111 11111000 00000000001111
Q ss_pred CHHHHHHHhcCCcEEEEecCCCCHHHHHHHhcc
Q 048064 176 HIDLNFRRLSCRKVLIVLDDVTCLNQIESLVGS 208 (429)
Q Consensus 176 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~ 208 (429)
-...+...|+..+-.+++.++.+.+.....+..
T Consensus 201 ~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 201 FAAGVRNALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 223377788889999999999888877654443
No 240
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=97.03 E-value=0.012 Score=63.09 Aligned_cols=215 Identities=19% Similarity=0.173 Sum_probs=106.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc----ceeEEEeec--hhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF----KGSCFLENI--REESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNF 181 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f----~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 181 (429)
...-+.|+|.+|.||||+...++-....+. ...+++... .......... .+..-+...+..............
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~~~~ 299 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGIAKQLIEAHQ 299 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCCcchhhHHHH
Confidence 344799999999999999999887654332 122222211 1111100000 122222222222222222333346
Q ss_pred HHhcCCcEEEEecCCCCHHH------HHHHhccCCCCCCCCEEEEEeCChhhhhhcCCCeEEEcCCCCHHHHHHHHHHh-
Q 048064 182 RRLSCRKVLIVLDDVTCLNQ------IESLVGSLDRLLPESRILITTRNKQVLRNCHINQIYEMKGLGDDHALELFIRH- 254 (429)
Q Consensus 182 ~~l~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~- 254 (429)
+.+...++++++|.+|.... ...+...++. -+...+|+|+|....-........+++..+.++.-.......
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~ 378 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQW 378 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHH
Confidence 78889999999999985531 2222222222 457889999997744333333445556666655444333311
Q ss_pred -------hhcCCCCCh--hHH-HH---HHHHHHHhCCChHHHHHHHHhhcC------CCHHHHHHHHHHHhhCCCccHHH
Q 048064 255 -------AFRQNLVDV--DYK-EL---SDKVINYAQGVPLALKILGCYLFE------RKKEVWENAIKKLKNFLHQNILD 315 (429)
Q Consensus 255 -------~~~~~~~~~--~~~-~~---~~~i~~~~~G~PLai~~~~~~l~~------~~~~~~~~~l~~l~~~~~~~i~~ 315 (429)
.+.. .... .+. .+ ..+-.......|+.|.+.+..... ....-++..++.+-...+..-..
T Consensus 379 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~ 457 (824)
T COG5635 379 LDAFIEDWFGD-SRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGI 457 (824)
T ss_pred HHHHHHhhhcc-cchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhh
Confidence 1111 1111 000 00 122233448889999888754431 33455666666554432222222
Q ss_pred HHHHhhhcCC
Q 048064 316 VLKISYDDLD 325 (429)
Q Consensus 316 ~l~~s~~~L~ 325 (429)
.+...|..+.
T Consensus 458 ~~~~~~~~~~ 467 (824)
T COG5635 458 KWSKTYAKLT 467 (824)
T ss_pred cchhhhcccc
Confidence 2334455443
No 241
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.02 E-value=0.0039 Score=53.77 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec--hhhhh--hcCCHHHHHHHHHHHHhcC---CCCCCCH---
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI--REESQ--KAGGLAFLQQKLLSEVLKD---VNVIPHI--- 177 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~--~~~~~~~~~~~l~~~~~~~---~~~~~~~--- 177 (429)
...+++|.|+.|.|||||++.++.... .....+++... ..... ....+..+. +++..++-. ......+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~-q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVP-QALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHH-HHHHHcCCHhHhcCCcccCCHH
Confidence 677999999999999999999887543 23344444311 10000 000011111 122222111 0111111
Q ss_pred --H--HHHHHhcCCcEEEEecCCC---CHHHHHHHhccCCCC-CC-CCEEEEEeCChhhhhh
Q 048064 178 --D--LNFRRLSCRKVLIVLDDVT---CLNQIESLVGSLDRL-LP-ESRILITTRNKQVLRN 230 (429)
Q Consensus 178 --~--~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~~-~~~iiiTtR~~~~~~~ 230 (429)
+ .+.+.+-..+-++++|+.- +....+.+...+... .. +..||++|.+......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1 1666677788899999983 333333333333222 22 5678888877665433
No 242
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0037 Score=60.41 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999765
No 243
>PRK05973 replicative DNA helicase; Provisional
Probab=97.00 E-value=0.0027 Score=56.92 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=30.6
Q ss_pred hhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 105 LLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 105 ~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
-+....++.|.|.+|+|||+++.+++.....+...++|++
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3346789999999999999999999887655544455543
No 244
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.00 E-value=0.0037 Score=52.94 Aligned_cols=115 Identities=19% Similarity=0.072 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCC-----CCC-------
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNV-----IPH------- 176 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~------- 176 (429)
...|-|++..|.||||.|..++.+...+--.++++--+... . ..+-......+.-.+...... .+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-W-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-c-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788899999999999999999876654444333222211 0 112122222210000000000 000
Q ss_pred ---HHHHHHHhcCC-cEEEEecCCC-----CHHHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 177 ---IDLNFRRLSCR-KVLIVLDDVT-----CLNQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 177 ---~~~l~~~l~~~-~~LlVlDdv~-----~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
.+...+.+... --++|||++- ..-..+.+...+...+++..||+|.|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11133344443 4599999983 1222344444455456778999999986
No 245
>PRK07667 uridine kinase; Provisional
Probab=96.99 E-value=0.0015 Score=57.09 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+|+|.|.+|+||||+|..+...+...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999999999987654
No 246
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0041 Score=59.04 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=56.4
Q ss_pred HHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC----
Q 048064 99 VEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD---- 170 (429)
Q Consensus 99 ~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 170 (429)
+.++.+.|. ...++.|-|.||||||||..+++.++.+.. .+.+++ .+ ....++... ...++..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GE-----ES~~QiklR-A~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GE-----ESLQQIKLR-ADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CC-----cCHHHHHHH-HHHhCCCccce
Confidence 445666665 678999999999999999999999998776 455554 22 122222111 1222211
Q ss_pred -CCCCCCHHHHHHHhcC-CcEEEEecCCC
Q 048064 171 -VNVIPHIDLNFRRLSC-RKVLIVLDDVT 197 (429)
Q Consensus 171 -~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 197 (429)
.....+++.+...+.+ ++-++|+|-+.
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 1223455556665554 67899999983
No 247
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.99 E-value=0.0027 Score=57.35 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 5789999999999999999999876544444555554
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0061 Score=52.08 Aligned_cols=125 Identities=16% Similarity=0.258 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCC--CC-------CC--C
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDV--NV-------IP--H 176 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~-------~~--~ 176 (429)
....++|.|+.|.|||||.+.++.... .....+++.... .. ........+.+ ..+.... .. .+ .
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~--~~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LR--DLDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hh--hcCHHHHHhhE-EEEcCCchhccchHHHHhhCHHH
Confidence 678999999999999999999987543 223444443111 00 00000000000 0000000 00 00 0
Q ss_pred HH--HHHHHhcCCcEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhcCCCeEEEc
Q 048064 177 ID--LNFRRLSCRKVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRNKQVLRNCHINQIYEM 239 (429)
Q Consensus 177 ~~--~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 239 (429)
.. .+...+...+-++++|+-. +....+.+...+.....+..||++|.+...... ..+++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 01 1556666788899999984 233333333333222235678888887766543 4455544
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0092 Score=57.64 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998765
No 250
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.97 E-value=0.0011 Score=56.94 Aligned_cols=36 Identities=31% Similarity=0.598 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
.+.+|.++|++|+||||+|+.++..+...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 567899999999999999999999987766666665
No 251
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.0074 Score=59.32 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++++++|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988765
No 252
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.97 E-value=0.0041 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 567899999999999999998863
No 253
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.97 E-value=0.00065 Score=54.84 Aligned_cols=22 Identities=55% Similarity=0.830 Sum_probs=20.6
Q ss_pred EEEEcCCCcchHHHHHHHHHHh
Q 048064 112 LGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
|+|.|.+|+||||+|+.+.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 254
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.96 E-value=0.0052 Score=68.81 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++-|.++|++|+|||.||+++|....
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 677899999999999999999998753
No 255
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.96 E-value=0.033 Score=58.20 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=36.9
Q ss_pred CCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 89 KNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++|....++++.+.+. ....|.|+|++|+||+++|+.+.+..
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568899888888877665 45568999999999999999988754
No 256
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.94 E-value=0.001 Score=66.33 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=40.9
Q ss_pred CcccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 90 NELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+++|.++.++++.+.|. ..+++.++||+|+||||||+.+++-+.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 468999999999999883 67899999999999999999999866443
No 257
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.019 Score=53.02 Aligned_cols=123 Identities=7% Similarity=0.037 Sum_probs=71.6
Q ss_pred HHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcC-------------cceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 100 EEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRN-------------FKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 100 ~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
++|...+. -.+...++|+.|+||+++|..++..+-.. ++...++...... . .-.+
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~-~I~i------- 77 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-R-LHSI------- 77 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-C-cCcH-------
Confidence 44555554 35678899999999999999999875321 2222222100000 0 0001
Q ss_pred HHHHhcCCCCCCCHHHHHHHhc-----CCcEEEEecCCC--CHHHHHHHhccCCCCCCCCEEEEEeCC-hhhhhh-cCCC
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLS-----CRKVLIVLDDVT--CLNQIESLVGSLDRLLPESRILITTRN-KQVLRN-CHIN 234 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~-~~~~ 234 (429)
+.+..+...+. +..-++|+|+++ +.+....++..+....+++.+|++|.+ ..+++. .+..
T Consensus 78 -----------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc 146 (290)
T PRK05917 78 -----------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146 (290)
T ss_pred -----------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc
Confidence 11111222222 345589999998 446788888888877777776666555 444444 2345
Q ss_pred eEEEcCCC
Q 048064 235 QIYEMKGL 242 (429)
Q Consensus 235 ~~~~l~~L 242 (429)
..+.+.++
T Consensus 147 q~~~~~~~ 154 (290)
T PRK05917 147 LSIHIPME 154 (290)
T ss_pred eEEEccch
Confidence 66777765
No 258
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.92 E-value=0.0063 Score=51.76 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEee---chhhhhhc-CCHHHHHHHHHHHHhcCCC-CCCCHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLEN---IREESQKA-GGLAFLQQKLLSEVLKDVN-VIPHIDLNFR 182 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~ 182 (429)
....++|.|+.|.|||||++.++...... ...+++.. +....... .....+.+.+........+ .....-.+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 67799999999999999999998754322 22222211 00000000 0000111111110000000 0000111666
Q ss_pred HhcCCcEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhcCCCeEEEc
Q 048064 183 RLSCRKVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRNKQVLRNCHINQIYEM 239 (429)
Q Consensus 183 ~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 239 (429)
.+..++-++++|+-- +....+.+...+... +..||++|.+...... ..+++.+
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 677788899999883 333333333333322 3567777777655432 3455544
No 259
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.92 E-value=0.0014 Score=54.60 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
+.+|.|+|.+|+||||||+++.+++........++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 457899999999999999999999987765555553
No 260
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.92 E-value=0.0025 Score=61.11 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
.++-+-|||+.|.|||-|+-.+++.+...-...+.+. .....+-..+.........+..+...+.++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh-------------~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH-------------EFMLDVHSRLHQLRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc-------------HHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 4677999999999999999999997643322222222 112222222222123334455666777778
Q ss_pred cEEEEecCCC--CHH---HHHHHhccCCCCCCCCEEEEEeC
Q 048064 188 KVLIVLDDVT--CLN---QIESLVGSLDRLLPESRILITTR 223 (429)
Q Consensus 188 ~~LlVlDdv~--~~~---~~~~l~~~l~~~~~~~~iiiTtR 223 (429)
..||+||++. +.. .+..++..+- ..|..+|.||.
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 8899999985 332 2344444332 34555555554
No 261
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.005 Score=61.13 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=31.9
Q ss_pred chhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 94 GVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 94 GR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
++...+..|.+.+. ...+++|+|++|+||||++..++..+...
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 44455555555442 56899999999999999999998876544
No 262
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.90 E-value=0.0056 Score=50.70 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
...+++|.|+.|.|||||++.++.... .....+++.......- ...+..- ....-.+.+.+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~-~~~lS~G--------------~~~rv~laral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGY-FEQLSGG--------------EKMRLALAKLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEE-EccCCHH--------------HHHHHHHHHHHhcC
Confidence 678999999999999999999887543 2233343321100000 0000000 00000145556667
Q ss_pred cEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhh
Q 048064 188 KVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRNKQVLRN 230 (429)
Q Consensus 188 ~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~ 230 (429)
+-++++|+.. +......+...+... +..||++|.+......
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 7899999983 333333333333322 2467777777655443
No 263
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.89 E-value=0.0054 Score=60.78 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-----
Q 048064 100 EEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD----- 170 (429)
Q Consensus 100 ~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 170 (429)
..|.+.|. ...++.|.|++|+|||||+.+++......-..++|+. .. .....+... ...++..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~E------es~~qi~~r-a~rlg~~~~~l~ 138 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GE------ESASQIKLR-AERLGLPSDNLY 138 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-cc------ccHHHHHHH-HHHcCCChhcEE
Confidence 44555554 5678999999999999999999998764434455554 21 122222222 1222211
Q ss_pred CCCCCCHHHHHHHhcC-CcEEEEecCCC
Q 048064 171 VNVIPHIDLNFRRLSC-RKVLIVLDDVT 197 (429)
Q Consensus 171 ~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 197 (429)
......++.+.+.+.. +.-++|+|.+.
T Consensus 139 ~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 139 LLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 1112345555555543 56799999984
No 264
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.89 E-value=0.0018 Score=64.67 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=58.6
Q ss_pred HHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHh-cCCCCCCC
Q 048064 99 VEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVL-KDVNVIPH 176 (429)
Q Consensus 99 ~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 176 (429)
++.+..++. ...++.|+|+.|+||||+...+.+.+.......+-+.+-.+... .+. .+.. .......-
T Consensus 231 ~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~v~~~~g~~f 300 (486)
T TIGR02533 231 LSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQVNPKIGLTF 300 (486)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEEEccccCccH
Confidence 344555554 56789999999999999999888776433223333332111100 000 0000 00111222
Q ss_pred HHHHHHHhcCCcEEEEecCCCCHHHHHHHhc
Q 048064 177 IDLNFRRLSCRKVLIVLDDVTCLNQIESLVG 207 (429)
Q Consensus 177 ~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~ 207 (429)
.+.+...|+..+=.|++.++.+.+.......
T Consensus 301 ~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~ 331 (486)
T TIGR02533 301 AAGLRAILRQDPDIIMVGEIRDLETAQIAIQ 331 (486)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHHHHHHHH
Confidence 3448888899999999999998886655443
No 265
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.89 E-value=0.0009 Score=58.56 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999988644
No 266
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.89 E-value=0.011 Score=59.33 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 89 KNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++|....++++.+.+. ....+.|.|.+|+|||++|+.+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred cccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 3569999988888877665 66679999999999999999887753
No 267
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0027 Score=54.47 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.0
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFK 138 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 138 (429)
+.|.+.|.||+||||+|+++++.++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 57889999999999999999998766543
No 268
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.006 Score=53.33 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC---c-ceeEEEeechh-hhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN---F-KGSCFLENIRE-ESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFR 182 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---f-~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 182 (429)
+.--+.|.|+||+|||||.+.++.-+... | +..+-+.+-+. ......+..+......-+.... ....+.+..
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~---cpk~~gmmm 212 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP---CPKAEGMMM 212 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhccc---chHHHHHHH
Confidence 34448899999999999999999876544 2 23333332221 1111111111111111111111 111111333
Q ss_pred Hhc-CCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCC
Q 048064 183 RLS-CRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRN 224 (429)
Q Consensus 183 ~l~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~ 224 (429)
..+ -.+=++|+|++-..+...++...+. .|.+++.|.--
T Consensus 213 aIrsm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG 252 (308)
T COG3854 213 AIRSMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHG 252 (308)
T ss_pred HHHhcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeecc
Confidence 333 3577999999987777666665543 57787777643
No 269
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.88 E-value=0.0058 Score=60.60 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=53.0
Q ss_pred HHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC----
Q 048064 99 VEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD---- 170 (429)
Q Consensus 99 ~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 170 (429)
+..|.+.|. ...++.|.|.+|+|||||+.+++.....+-..++|+. .. .....+.... ..++..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs-~E------Es~~qi~~ra-~rlg~~~~~l 151 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS-GE------ESLQQIKMRA-IRLGLPEPNL 151 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-Cc------CCHHHHHHHH-HHcCCChHHe
Confidence 345555554 6778999999999999999999988765534455554 21 1222222111 111111
Q ss_pred -CCCCCCHHHHHHHhcC-CcEEEEecCCC
Q 048064 171 -VNVIPHIDLNFRRLSC-RKVLIVLDDVT 197 (429)
Q Consensus 171 -~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 197 (429)
......++.+...+.. +.-++|+|.+.
T Consensus 152 ~~~~e~~~~~I~~~i~~~~~~~vVIDSIq 180 (454)
T TIGR00416 152 YVLSETNWEQICANIEEENPQACVIDSIQ 180 (454)
T ss_pred EEcCCCCHHHHHHHHHhcCCcEEEEecch
Confidence 1112344555555544 56689999884
No 270
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.88 E-value=0.00065 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.3
Q ss_pred EEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 112 LGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
|.|+|++|+|||+||..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999998776543
No 271
>PRK07261 topology modulation protein; Provisional
Probab=96.87 E-value=0.00091 Score=57.21 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|+|+|++|+||||||+.++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998764
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.86 E-value=0.00093 Score=55.15 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987653
No 273
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.86 E-value=0.0011 Score=61.45 Aligned_cols=121 Identities=20% Similarity=0.147 Sum_probs=65.8
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLS 165 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (429)
..+.-.....+.+.++|. ....+.|.|++|+||||++..+...+...-...+.+.+..+.......
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~---------- 173 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPN---------- 173 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSS----------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccc----------
Confidence 344433444445555554 588999999999999999999998775552333444332221110000
Q ss_pred HHhcC--CCCCCCHHHHHHHhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEE-EEEeCC
Q 048064 166 EVLKD--VNVIPHIDLNFRRLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRI-LITTRN 224 (429)
Q Consensus 166 ~~~~~--~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~i-iiTtR~ 224 (429)
..... .......+.+...|+..+=.++++++.+.+....+... ..|..+ +-|...
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 174 QIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp EEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred eEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 00000 12222333477788888889999999888776663332 346566 445443
No 274
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.0021 Score=54.49 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCC--HH--HHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPH--ID--LNFRR 183 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~--~l~~~ 183 (429)
....++|.|+.|.|||||.+.++.... .....+++.... .. ........+ ..+..... .+. .+ .+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~~~---~~i~~~~q-LS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS--FASPRDARR---AGIAMVYQ-LSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC--cCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHH
Confidence 678999999999999999999887543 233444443211 00 011110000 00100000 110 11 15566
Q ss_pred hcCCcEEEEecCCC---CHHHHHHHhccCCCC-CCCCEEEEEeCChhhhhh
Q 048064 184 LSCRKVLIVLDDVT---CLNQIESLVGSLDRL-LPESRILITTRNKQVLRN 230 (429)
Q Consensus 184 l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~iiiTtR~~~~~~~ 230 (429)
+-..+-++++|+.- +....+.+...+... ..+..||++|.+......
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 67788899999984 333333333333221 236678888888764443
No 275
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0018 Score=58.32 Aligned_cols=47 Identities=28% Similarity=0.464 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.=|-+..+++|.+... .++-|.+||++|.|||-||++++++...-
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 456688999999998765 56789999999999999999999975433
No 276
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.011 Score=59.62 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=94.6
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
....+.-|.+...+++.+.+. -++-|.++||+|.|||.||++++....-.|-.. + .
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i---S-G------ 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI---S-G------ 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceec---c-c------
Confidence 345678898888777777654 245699999999999999999998754333110 0 0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcCCcEEEEecCCCCH----------------HHHHHHhccCCCCCCC
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSCRKVLIVLDDVTCL----------------NQIESLVGSLDRLLPE 215 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~~ 215 (429)
.++..+ .- .-....+.+ ..+..++-++++++|.+|.. ..+..++.....+..+
T Consensus 217 -S~FVem----fV-----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 217 -SDFVEM----FV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred -hhhhhh----hc-----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 000000 00 011112222 34455667899999998532 1345555555544432
Q ss_pred C-EEEE--EeCChhhh-----hhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 048064 216 S-RILI--TTRNKQVL-----RNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL 281 (429)
Q Consensus 216 ~-~iii--TtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 281 (429)
. .|++ |.|. +++ ......+.+.++..+...-.+++.-++-..... ...+ ...|++.+-|.-.
T Consensus 287 ~gviviaaTNRp-dVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~--~~Vd-l~~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRP-DVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA--EDVD-LKKIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCc-ccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC--CcCC-HHHHhhhCCCccc
Confidence 2 2333 4443 332 222345667788777788888887665332211 1111 2236777766543
No 277
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.82 E-value=0.0025 Score=58.53 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=23.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
+.|.|+|.||+||||+|+++...+.+.-..+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4789999999999999999999877643333333
No 278
>PRK10436 hypothetical protein; Provisional
Probab=96.81 E-value=0.0033 Score=62.22 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=59.2
Q ss_pred HHHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-CCCCC
Q 048064 98 RVEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-VNVIP 175 (429)
Q Consensus 98 ~~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 175 (429)
.++.+.+++. ....|.|+|+.|+||||+...+...+.......+-+.+--+... .+. .+..-. .....
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l--~gi--------~Q~~v~~~~g~~ 275 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL--AGI--------NQTQIHPKAGLT 275 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC--CCc--------ceEeeCCccCcC
Confidence 3445555555 77899999999999999887777765433222333322111100 000 011001 11222
Q ss_pred CHHHHHHHhcCCcEEEEecCCCCHHHHHHHhc
Q 048064 176 HIDLNFRRLSCRKVLIVLDDVTCLNQIESLVG 207 (429)
Q Consensus 176 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~ 207 (429)
-...++..|+..+=+|++.++.+.+.....+.
T Consensus 276 f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~ 307 (462)
T PRK10436 276 FQRVLRALLRQDPDVIMVGEIRDGETAEIAIK 307 (462)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH
Confidence 33448888999999999999998887664443
No 279
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.80 E-value=0.0023 Score=55.62 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=52.4
Q ss_pred HHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC--CCCCCCHHH
Q 048064 102 IQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD--VNVIPHIDL 179 (429)
Q Consensus 102 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~ 179 (429)
|...+.....++|+|+.|+||||+++.++..+... ...+.+.+..+......... .+..+.... .......+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWV----RLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEE----EEEEecCCCCCCCccCHHHH
Confidence 33344478899999999999999999988866432 22333322211100000000 000000000 011122233
Q ss_pred HHHHhcCCcEEEEecCCCCHHHHHH
Q 048064 180 NFRRLSCRKVLIVLDDVTCLNQIES 204 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv~~~~~~~~ 204 (429)
+...++..+-.++++++.+.+.+..
T Consensus 93 l~~~lR~~pd~i~igEir~~ea~~~ 117 (186)
T cd01130 93 LRSALRMRPDRIIVGEVRGGEALDL 117 (186)
T ss_pred HHHHhccCCCEEEEEccCcHHHHHH
Confidence 5666777888999999988776543
No 280
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.80 E-value=0.0071 Score=51.90 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=59.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec--hhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI--REESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLS 185 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~ 185 (429)
...+++|.|+.|.|||||++.++.-... ....+.+... ..... ...+..-+ ...-.+.+.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q-~~~LSgGq--------------~qrv~laral~ 87 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ-YIDLSGGE--------------LQRVAIAAALL 87 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcc-cCCCCHHH--------------HHHHHHHHHHh
Confidence 6779999999999999999988875432 2233333210 00000 00000000 00111555666
Q ss_pred CCcEEEEecCCC---CHHHHHHHhccCCCC--CCCCEEEEEeCChhhhhhcCCCeEEEcC
Q 048064 186 CRKVLIVLDDVT---CLNQIESLVGSLDRL--LPESRILITTRNKQVLRNCHINQIYEMK 240 (429)
Q Consensus 186 ~~~~LlVlDdv~---~~~~~~~l~~~l~~~--~~~~~iiiTtR~~~~~~~~~~~~~~~l~ 240 (429)
.++-++++|+-- +....+.+...+... ..+..||++|.+......+ ...++.+.
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 778899999983 333333333222211 1235677777776555443 23444443
No 281
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.78 E-value=0.0053 Score=57.42 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=56.6
Q ss_pred HHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCH-
Q 048064 101 EIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHI- 177 (429)
Q Consensus 101 ~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 177 (429)
.|..++.....+.|+|++|+||||+++.++..+.... ...+.+.+..+......+.. .+. ........
T Consensus 124 ~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~-~~~~~~~~~ 194 (299)
T TIGR02782 124 VLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLR-TSDDAISMT 194 (299)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEE-ecCCCCCHH
Confidence 3444444677899999999999999999998875532 23333333322211000000 000 01111123
Q ss_pred HHHHHHhcCCcEEEEecCCCCHHHHHHH
Q 048064 178 DLNFRRLSCRKVLIVLDDVTCLNQIESL 205 (429)
Q Consensus 178 ~~l~~~l~~~~~LlVlDdv~~~~~~~~l 205 (429)
+.+...|+..+=.||+.++...+.+..+
T Consensus 195 ~~l~~aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 195 RLLKATLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HHHHHHhcCCCCEEEEeccCCHHHHHHH
Confidence 3377778888889999999888765543
No 282
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.0029 Score=56.50 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=33.4
Q ss_pred HHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 101 EIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 101 ~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
.|..+|. ...++.|+|++|+||||+|.+++.....+-..++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444554 5778999999999999999999998765545556664
No 283
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.77 E-value=0.0013 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+++|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 284
>PRK06762 hypothetical protein; Provisional
Probab=96.77 E-value=0.0012 Score=56.10 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.+|.|+|++|+||||+|+.+++++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999887
No 285
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.76 E-value=0.0014 Score=58.20 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
.+.+.|+|+.|.|||||.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999999875
No 286
>PRK10867 signal recognition particle protein; Provisional
Probab=96.76 E-value=0.059 Score=52.91 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+.++.++|++|+||||++..++..+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5789999999999999999999877655
No 287
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0049 Score=60.27 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=67.7
Q ss_pred hHHHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCC
Q 048064 97 SRVEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIP 175 (429)
Q Consensus 97 ~~~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (429)
...+.+.+++. ...++.+.||.|+||||..-.+...+......++-+.+--+.. ..++. .--.+..-...
T Consensus 245 ~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~--~~gI~-------Q~qVN~k~glt 315 (500)
T COG2804 245 FQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ--LPGIN-------QVQVNPKIGLT 315 (500)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee--cCCcc-------eeecccccCCC
Confidence 33455555665 7889999999999999999888887765555444433211110 00111 00011112222
Q ss_pred CHHHHHHHhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEe
Q 048064 176 HIDLNFRRLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITT 222 (429)
Q Consensus 176 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTt 222 (429)
-...++..|++.|=+|.+.++.+.+..+-....- --++.++||
T Consensus 316 fa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAa----lTGHLVlST 358 (500)
T COG2804 316 FARALRAILRQDPDVIMVGEIRDLETAEIAVQAA----LTGHLVLST 358 (500)
T ss_pred HHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHH----hcCCeEeee
Confidence 3344888899999999999999888665544431 123455555
No 288
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.74 E-value=0.011 Score=59.68 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 89 KNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++|....++++.+.+. ....|.|.|++|+||+.+|+.+.+.-
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 3459999999998888775 66789999999999999999988753
No 289
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.72 E-value=0.0066 Score=58.34 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc--eeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-CCCCCCH-HHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFK--GSCFLENIREESQKAGGLAFLQQKLLSEVLKD-VNVIPHI-DLNFRR 183 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~~l~~~ 183 (429)
....+.|+|+.|+||||++..+.+.+....+ ..+.+.+..+... .....+.. ..+ .+ ....... +.++..
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~--~~~~~~~~--~~q--~evg~~~~~~~~~l~~a 221 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL--GSPDDLLP--PAQ--SQIGRDVDSFANGIRLA 221 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc--CCCceeec--ccc--cccCCCccCHHHHHHHh
Confidence 6678999999999999999999887754332 2333322222110 00000000 000 01 1112223 347788
Q ss_pred hcCCcEEEEecCCCCHHHHHHHhcc
Q 048064 184 LSCRKVLIVLDDVTCLNQIESLVGS 208 (429)
Q Consensus 184 l~~~~~LlVlDdv~~~~~~~~l~~~ 208 (429)
|+..+-.|+++++.+.+..+..+..
T Consensus 222 LR~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 222 LRRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred hccCCCEEeeCCCCCHHHHHHHHHH
Confidence 8999999999999988877754443
No 290
>PTZ00301 uridine kinase; Provisional
Probab=96.72 E-value=0.0014 Score=57.76 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+|+|.|++|+||||||+.+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999998887543
No 291
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.71 E-value=0.022 Score=51.53 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+..|+|++|+|||+|+..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999998754
No 292
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.71 E-value=0.0081 Score=51.45 Aligned_cols=125 Identities=19% Similarity=0.219 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCC---------CC--C
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNV---------IP--H 176 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~--~ 176 (429)
...+++|.|+.|.|||||.+.++.... .....+.+.... .. ........+.+. ........ .+ .
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~--~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGAD-IS--QWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEE-cc--cCCHHHHHhheE-EECCCCccccCcHHHHCcCHHH
Confidence 677999999999999999999987543 223334432110 00 001111111000 00000000 00 0
Q ss_pred HH--HHHHHhcCCcEEEEecCCC---CHHHHHHHhccCCCC-CCCCEEEEEeCChhhhhhcCCCeEEEc
Q 048064 177 ID--LNFRRLSCRKVLIVLDDVT---CLNQIESLVGSLDRL-LPESRILITTRNKQVLRNCHINQIYEM 239 (429)
Q Consensus 177 ~~--~l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~iiiTtR~~~~~~~~~~~~~~~l 239 (429)
.+ .+.+.+-.++-++++|+.. +......+...+... ..+..||++|.+..... . ..+++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 01 1555666778899999984 333333333322211 23667888887776554 2 4455544
No 293
>PTZ00494 tuzin-like protein; Provisional
Probab=96.71 E-value=0.52 Score=45.87 Aligned_cols=157 Identities=12% Similarity=0.067 Sum_probs=88.4
Q ss_pred CCCCcccchhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
.....+|.|+.+-+.+.+.|. .++++.+.|.-|+|||+|++....+ .....+++. ++.. ++.+..+.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VRg~---EDtLrsVV- 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VGGT---EDTLRSVV- 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ecCC---cchHHHHH-
Confidence 556789999999888877775 8999999999999999999887654 223345554 3322 33344333
Q ss_pred HHHHHHhcCCCCC--CCHH---H----HHHHhcCCcEEEEec--CCCCHHH-HHHHhccCCCCCCCCEEEEEeCChhhhh
Q 048064 162 KLLSEVLKDVNVI--PHID---L----NFRRLSCRKVLIVLD--DVTCLNQ-IESLVGSLDRLLPESRILITTRNKQVLR 229 (429)
Q Consensus 162 ~l~~~~~~~~~~~--~~~~---~----l~~~l~~~~~LlVlD--dv~~~~~-~~~l~~~l~~~~~~~~iiiTtR~~~~~~ 229 (429)
..++-...+. +.++ + -.....++.-+||+- +=.+..- ..+.. .|..-..-|+|++---.+.+-.
T Consensus 440 ---KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 440 ---RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred ---HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhch
Confidence 3333321111 1111 1 122234555566653 2223321 11111 1111134567777544332211
Q ss_pred ---hcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 230 ---NCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 230 ---~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
.+..-..|.+++++.++|.++.+...
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 12234678899999999999886654
No 294
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0066 Score=63.88 Aligned_cols=125 Identities=16% Similarity=0.214 Sum_probs=70.3
Q ss_pred hhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCC--
Q 048064 96 ESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNV-- 173 (429)
Q Consensus 96 ~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 173 (429)
.....+|.+.+...+++.|+|++|+||||-.-+++....-.....+-+..-+... ...++..+...++.....
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlA-----ArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLA-----ARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHH-----HHHHHHHHHHHhCCCcCcee
Confidence 3556777777778999999999999999998888876433223344443333322 233444444444432110
Q ss_pred ---------C---CCH-----HHHHHHhcCCc-----EEEEecCCCCHH-HHHHHhcc----CCCCCCCCEEEEEeCCh
Q 048064 174 ---------I---PHI-----DLNFRRLSCRK-----VLIVLDDVTCLN-QIESLVGS----LDRLLPESRILITTRNK 225 (429)
Q Consensus 174 ---------~---~~~-----~~l~~~l~~~~-----~LlVlDdv~~~~-~~~~l~~~----l~~~~~~~~iiiTtR~~ 225 (429)
. ..+ ..+.+.+.+.+ -.+|+|++++-. +.+-++.. +....+..||||+|=+-
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 0 011 11555554333 479999998543 22222222 22223358999988543
No 295
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.70 E-value=0.0024 Score=56.52 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+++.|+|++|+|||+++.+++.........++|+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4678999999999999999999988766655667665
No 296
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.70 E-value=0.015 Score=52.97 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH---HHHHHHhcCCCCCCCHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ---KLLSEVLKDVNVIPHIDLNFRRL 184 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~l~~~l 184 (429)
....|.|.|+.|+||||....+.+.+-++++..+... .+.++.+-+ .+..+-.-.....+-.+.|+..|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI--------EDPIE~vh~skkslI~QREvG~dT~sF~~aLraAL 195 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI--------EDPIEYVHESKKSLINQREVGRDTLSFANALRAAL 195 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe--------cCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHh
Confidence 7789999999999999887778877766666555433 222222211 12111111111122234488999
Q ss_pred cCCcEEEEecCCCCHHHHHHHhcc
Q 048064 185 SCRKVLIVLDDVTCLNQIESLVGS 208 (429)
Q Consensus 185 ~~~~~LlVlDdv~~~~~~~~l~~~ 208 (429)
+.-|=+|++-++.+.+.+..-+..
T Consensus 196 ReDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 196 REDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred hcCCCEEEEeccccHHHHHHHHHH
Confidence 999999999999988877655443
No 297
>PRK08233 hypothetical protein; Provisional
Probab=96.68 E-value=0.0015 Score=56.46 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 298
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.67 E-value=0.02 Score=52.93 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 144 (429)
...++.|.|++|+||||++.+++.....+ -..++|++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 56799999999999999999999886544 34455554
No 299
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.67 E-value=0.0074 Score=51.90 Aligned_cols=115 Identities=22% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHH-----hcC--CCCCCC----
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEV-----LKD--VNVIPH---- 176 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~--~~~~~~---- 176 (429)
....|.|+|..|-||||.|...+.+...+-..+.++--+.... ..+-....+.+. .+ +.. ......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~--~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW--STGERNLLEFGG-GVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC--ccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHH
Confidence 4578999999999999999999988765544443333232210 112222222210 00 000 000000
Q ss_pred ------HHHHHHHhcC-CcEEEEecCCCCH-----HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 177 ------IDLNFRRLSC-RKVLIVLDDVTCL-----NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 177 ------~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
++...+.+.. .--+||||++-.. -..+++...+...+++..||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1113334444 4459999999322 22344555555556778999999976
No 300
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.67 E-value=0.004 Score=64.05 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=47.5
Q ss_pred CCCCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeec
Q 048064 87 DSKNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENI 146 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~ 146 (429)
.....++|.++.++.+...+...+.+.++|++|+||||+|+.+++.+... |...+++.+.
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 44578999999999888888866788899999999999999999987554 3444455444
No 301
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.66 E-value=0.0031 Score=64.75 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCCCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEee
Q 048064 87 DSKNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLEN 145 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~ 145 (429)
.....++|.++.++.|...+...+.+.++|++|+||||+|+.+++.+... +...+|..+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 55678999999999999888866789999999999999999999876433 355666665
No 302
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.66 E-value=0.0014 Score=52.11 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHhhcCccee
Q 048064 112 LGIWGIGGIGKTTIARVIFNRISRNFKGS 140 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 140 (429)
|.|.|.+|+||||+|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999887777543
No 303
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.086 Score=48.84 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=56.6
Q ss_pred CCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhc-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCC
Q 048064 186 CRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNK-QVLRNC-HINQIYEMKGLGDDHALELFIRHAFRQNLV 261 (429)
Q Consensus 186 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 261 (429)
+++-++|||+++. ......|+..+...++++.+|++|.+. .+++.+ +....+++.+ +.++..+++.... .
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~~g-----~ 176 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQKG-----L 176 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHHcC-----C
Confidence 3556999999984 457888999888777777777666554 455443 3456778876 7777777775432 1
Q ss_pred ChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 262 DVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 262 ~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
. .+.+ +++..+.|.|-....+
T Consensus 177 ~---~~~a-~~la~~~~s~~~A~~l 197 (290)
T PRK07276 177 L---KTQA-ELLAKLAQSTSEAEKL 197 (290)
T ss_pred C---hHHH-HHHHHHCCCHHHHHHH
Confidence 1 1122 3455556677544433
No 304
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.65 E-value=0.0037 Score=56.05 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|+|++|+|||++|.+++.........++|+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5678999999999999999999998766655666665
No 305
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.64 E-value=0.016 Score=54.68 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 35789999999999999999999987654
No 306
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.62 E-value=0.02 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
++.+.|++|+||||++..++..+.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999887665
No 307
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.015 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+-|..|||||.|||-.|++++.+-.-+
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlD 411 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLD 411 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCc
Confidence 56789999999999999999999875433
No 308
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.08 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+-+.+.|++|.|||-|++.++-+..
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~ 211 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESG 211 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhc
Confidence 455678999999999999999998764
No 309
>PRK15115 response regulator GlrR; Provisional
Probab=96.61 E-value=0.12 Score=51.54 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=34.5
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|....+.++.+... ....+.|.|.+|+|||++|+.+.+..
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 458888887777666543 55678899999999999999887754
No 310
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0093 Score=53.76 Aligned_cols=122 Identities=22% Similarity=0.209 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCC-------CCC--CCHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDV-------NVI--PHID 178 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~--~~~~ 178 (429)
...+++|+|.+|+||||+++.+..-..-- ...+++..-.-.............+++...+... ... .+.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 67899999999999999999988754322 3334443111000001122233444444433211 011 1111
Q ss_pred H--HHHHhcCCcEEEEecCCCCH------HHHHHHhccCCCCCCCCEEEEEeCChhhhhhc
Q 048064 179 L--NFRRLSCRKVLIVLDDVTCL------NQIESLVGSLDRLLPESRILITTRNKQVLRNC 231 (429)
Q Consensus 179 ~--l~~~l~~~~~LlVlDdv~~~------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 231 (429)
. +.+.+.-++-++|.|+.-+. .+.-.++..+.. ..|...++.|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 1 77788889999999998422 233344444432 3455566666666665554
No 311
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.60 E-value=0.0039 Score=50.48 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 102 IQSLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 102 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
|...+....++++.|.-|.||||+++.+++.+.
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 333444677999999999999999999999753
No 312
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.60 E-value=0.0018 Score=57.32 Aligned_cols=26 Identities=38% Similarity=0.648 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+|+|.|++|+|||||++.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999999887
No 313
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.59 E-value=0.015 Score=49.47 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=23.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
++.|.|.+|+|||++|.+++.. .....+++.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 3689999999999999999876 223455554
No 314
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.02 Score=60.41 Aligned_cols=97 Identities=14% Similarity=0.232 Sum_probs=62.8
Q ss_pred CcccchhhHHHHHHHhhc-------C---CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHH
Q 048064 90 NELVGVESRVEEIQSLLG-------A---APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~-------~---~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
..++|.++.+..+.+.+. + .-...+.|+.|+|||-||++++..+-+..+.-+-+. +++ .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse----------~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSE----------F 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhh----------h
Confidence 356788888888877775 1 235678999999999999999998855544444332 221 1
Q ss_pred HHHHHHHHhcCC---CCCCCHHHHHHHhcCCcE-EEEecCCCCH
Q 048064 160 QQKLLSEVLKDV---NVIPHIDLNFRRLSCRKV-LIVLDDVTCL 199 (429)
Q Consensus 160 ~~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 199 (429)
.. ...+.... -..+..+.+.+.++.+++ +|+||||+..
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 11 22222221 223445568888988886 6778999733
No 315
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0069 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67799999999999999999998643
No 316
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.58 E-value=0.0022 Score=54.88 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....|.|+|++|+||||+|+.+++++
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999987
No 317
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.58 E-value=0.0035 Score=59.71 Aligned_cols=52 Identities=27% Similarity=0.234 Sum_probs=43.7
Q ss_pred CcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeE
Q 048064 90 NELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSC 141 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 141 (429)
..++|+++.+..+...+...+.+.+.|++|+|||+||+.++..+.-.|..+-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 4489999988888888888889999999999999999999998875554333
No 318
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.58 E-value=0.003 Score=56.88 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
...+++|.|++|.|||||++.++..+....
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 467899999999999999999998876543
No 319
>PRK06547 hypothetical protein; Provisional
Probab=96.57 E-value=0.0031 Score=53.84 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+|+|.|++|+||||+|..+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999874
No 320
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.56 E-value=0.0053 Score=62.75 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=58.5
Q ss_pred HHHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-CCCCC
Q 048064 98 RVEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-VNVIP 175 (429)
Q Consensus 98 ~~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 175 (429)
.++.+.+++. ....|.|+|+.|+||||+...+.+.+...-...+-+.+--+. .+.. + .+..-. .....
T Consensus 304 ~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~-----~~~~----~-~q~~v~~~~g~~ 373 (564)
T TIGR02538 304 QKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI-----NLPG----I-NQVNVNPKIGLT 373 (564)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee-----cCCC----c-eEEEeccccCCC
Confidence 3445555555 678999999999999999888777663221122222211111 0000 0 011101 11122
Q ss_pred CHHHHHHHhcCCcEEEEecCCCCHHHHHHHhc
Q 048064 176 HIDLNFRRLSCRKVLIVLDDVTCLNQIESLVG 207 (429)
Q Consensus 176 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~l~~ 207 (429)
-.+.+...|+..+=+|++.++.+.+.......
T Consensus 374 ~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~ 405 (564)
T TIGR02538 374 FAAALRSFLRQDPDIIMVGEIRDLETAEIAIK 405 (564)
T ss_pred HHHHHHHHhccCCCEEEeCCCCCHHHHHHHHH
Confidence 33448888999999999999998887665443
No 321
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.56 E-value=0.0069 Score=50.47 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
++.|+|.+|+||||+|+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998753
No 322
>PRK04040 adenylate kinase; Provisional
Probab=96.56 E-value=0.0025 Score=55.29 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|+|++|+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999999874
No 323
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.56 E-value=0.011 Score=58.09 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCHHH-
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHIDL- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~- 179 (429)
..+.++|.|.+|+|||||+..++.....+....+.+..+.+. ......+.+.++..-... ..+.+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 678899999999999999999988776554444444444432 233444555554432111 011111111
Q ss_pred --------HHHHh---cCCcEEEEecCCCCH
Q 048064 180 --------NFRRL---SCRKVLIVLDDVTCL 199 (429)
Q Consensus 180 --------l~~~l---~~~~~LlVlDdv~~~ 199 (429)
+.+++ .++++||++|++-..
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 44444 678999999999543
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.53 E-value=0.013 Score=53.34 Aligned_cols=26 Identities=35% Similarity=0.655 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999988754
No 325
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.53 E-value=0.0069 Score=57.51 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHHhhc-------------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-------eeEEEe-
Q 048064 92 LVGVESRVEEIQSLLG-------------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-------GSCFLE- 144 (429)
Q Consensus 92 ~vGR~~~~~~l~~~l~-------------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~- 144 (429)
..|-..+++.|.+.+. ..-++.|+|.+|.||||+.+.+.......-. ..+-+.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 4555667777777653 4458999999999999999998875432211 111110
Q ss_pred e-----chhhhhhcCCHHHHHHHHHHHHhc-------------CCCC----------CCCH--HHHHHHhcCCcEEEEec
Q 048064 145 N-----IREESQKAGGLAFLQQKLLSEVLK-------------DVNV----------IPHI--DLNFRRLSCRKVLIVLD 194 (429)
Q Consensus 145 ~-----~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~----------~~~~--~~l~~~l~~~~~LlVlD 194 (429)
| +........+-..++.++.+..+. .+.. ..+- ..+...+.+++-++++|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 0 111111112222344444433332 1000 0000 01667778888999999
Q ss_pred CCCCH---HHHHHHhccCCCC--CCCCEEEEEeCChhhhhhcCCCe
Q 048064 195 DVTCL---NQIESLVGSLDRL--LPESRILITTRNKQVLRNCHINQ 235 (429)
Q Consensus 195 dv~~~---~~~~~l~~~l~~~--~~~~~iiiTtR~~~~~~~~~~~~ 235 (429)
.+... .....+...+... ..|+.+++.|+.+++...+....
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~ 578 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDT 578 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCce
Confidence 98522 2222222222221 25777777777788877765443
No 326
>PRK03839 putative kinase; Provisional
Probab=96.53 E-value=0.0022 Score=55.39 Aligned_cols=24 Identities=29% Similarity=0.715 Sum_probs=21.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999863
No 327
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0089 Score=51.18 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 66799999999999999999988754
No 328
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.52 E-value=0.026 Score=51.74 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...++++|++|+||||++..++..+..+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~ 102 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK 102 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4799999999999999999998876544
No 329
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.0021 Score=52.87 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=22.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+|+|.|++|+||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999864
No 330
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.52 E-value=0.0028 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++|.+.|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999988753
No 331
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.048 Score=51.84 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhhh----cCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 233 INQIYEMKGLGDDHALELFIRHAF----RQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 233 ~~~~~~l~~L~~~ea~~L~~~~~~----~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
...++++++++.+|+.+++.-..- ....+. ++.-+++.-..+|||-.++.++.++
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 355788999999999998765542 111221 3445677778899997777776654
No 332
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.51 E-value=0.0029 Score=60.89 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHhhc----------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 89 KNELVGVESRVEEIQSLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
..+++|.+...+.+...+. .++.+.++|++|+|||++|+.++..+...|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3567888777777754443 247899999999999999999999875443
No 333
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.51 E-value=0.0033 Score=54.17 Aligned_cols=26 Identities=42% Similarity=0.625 Sum_probs=23.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+|+|.|.+|+||||||..+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999987643
No 334
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.51 E-value=0.011 Score=55.66 Aligned_cols=96 Identities=21% Similarity=0.169 Sum_probs=54.5
Q ss_pred HHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHH
Q 048064 101 EIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHID 178 (429)
Q Consensus 101 ~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (429)
.|..++.....+.|+|.+|+||||++..+...+.... ...+-+.+..+......+... +. ........+
T Consensus 136 ~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~--------l~-~~~~~~~~~ 206 (323)
T PRK13833 136 VIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA--------LH-TSDTVDMAR 206 (323)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEE--------ec-cCCCcCHHH
Confidence 3344444667899999999999999999998764322 222333222221100000000 00 011122223
Q ss_pred HHHHHhcCCcEEEEecCCCCHHHHHHH
Q 048064 179 LNFRRLSCRKVLIVLDDVTCLNQIESL 205 (429)
Q Consensus 179 ~l~~~l~~~~~LlVlDdv~~~~~~~~l 205 (429)
.+...|+..+-.+|+.++...+.+..+
T Consensus 207 lv~~aLR~~PD~IivGEiRg~ea~~~l 233 (323)
T PRK13833 207 LLKSTMRLRPDRIIVGEVRDGAALTLL 233 (323)
T ss_pred HHHHHhCCCCCEEEEeecCCHHHHHHH
Confidence 367788889999999999887766543
No 335
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.50 E-value=0.027 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.154 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++++|.|+.|.|||||++.++..+
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4799999999999999999987643
No 336
>PHA02244 ATPase-like protein
Probab=96.50 E-value=0.0092 Score=56.66 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=35.2
Q ss_pred CCCCcccchhhHHH----HHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 87 DSKNELVGVESRVE----EIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 87 ~~~~~~vGR~~~~~----~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.....++|....+. .+..++.....|.|+|++|+|||+||+.+++...
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 33456777665554 4444445666789999999999999999999864
No 337
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.49 E-value=0.0035 Score=60.46 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=39.5
Q ss_pred CCcccchhhHHHHHHHhhc----------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 89 KNELVGVESRVEEIQSLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
...++|.+...+.+..++. .++.+.++|++|+|||+||+.++..+...|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 4668888888888877663 147899999999999999999999875443
No 338
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.49 E-value=0.0026 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++++|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999765
No 339
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.47 E-value=0.07 Score=45.37 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.3
Q ss_pred HHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 99 VEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 99 ~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
++.+...|. ..++..|+|..|+|||||...++-.
T Consensus 26 ~r~l~~~LeF~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 26 FRHLEERLEFRAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred HHhhhhhccccCceEEEEcCCCccHHHHHHHHHhh
Confidence 344444555 8899999999999999999988763
No 340
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.47 E-value=0.02 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6779999999999999999998874
No 341
>PF13245 AAA_19: Part of AAA domain
Probab=96.47 E-value=0.0052 Score=44.60 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=19.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.+++.|.|++|.|||+++......+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46778889999999996655555443
No 342
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.47 E-value=0.01 Score=54.46 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCC-----CC---CCCHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDV-----NV---IPHIDLN 180 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~---~~~~~~l 180 (429)
...++|.|++|.|||||.+.++..+... ...+++... .... ......+...+ ..+.... .. ......+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~-~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGI-VDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eeec-chhHHHHHHHh-cccccccccccccccccchHHHHH
Confidence 4689999999999999999999876543 222332110 0000 00111221110 0011100 00 0111123
Q ss_pred HHHhc-CCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhh
Q 048064 181 FRRLS-CRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQV 227 (429)
Q Consensus 181 ~~~l~-~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 227 (429)
...+. ..+-++++|++...+.+..+...+. .|..+|+||-+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 33333 5788999999987777776665543 47778999887654
No 343
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0053 Score=54.24 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=37.1
Q ss_pred cccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 91 ELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
++=|.+-..+++.+... .++-|.++|++|+|||-||++++++....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 45667777777776553 678899999999999999999998765444
No 344
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.46 E-value=0.0038 Score=52.17 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEcCCCcchHHHHHHHHHHh
Q 048064 114 IWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 114 I~G~~GiGKTtLa~~~~~~~ 133 (429)
|.|+||+||||+|..++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999976
No 345
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.46 E-value=0.0049 Score=58.07 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
....++|+|+.|+|||||++.++..+.... ..+.+.+..+......+...+ ...............+.+...++..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL---FYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE---EecCCCCCcCccCHHHHHHHHhcCC
Confidence 778999999999999999999887664332 233333322211100000000 0000000001122223366678888
Q ss_pred cEEEEecCCCCHHHHHH
Q 048064 188 KVLIVLDDVTCLNQIES 204 (429)
Q Consensus 188 ~~LlVlDdv~~~~~~~~ 204 (429)
+-.+++|++...+.+..
T Consensus 219 pd~ii~gE~r~~e~~~~ 235 (308)
T TIGR02788 219 PDRIILGELRGDEAFDF 235 (308)
T ss_pred CCeEEEeccCCHHHHHH
Confidence 88999999988765543
No 346
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.46 E-value=0.0035 Score=54.28 Aligned_cols=34 Identities=21% Similarity=0.070 Sum_probs=27.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999999887655555566654
No 347
>PRK00625 shikimate kinase; Provisional
Probab=96.45 E-value=0.0025 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 348
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.44 E-value=0.02 Score=56.46 Aligned_cols=89 Identities=20% Similarity=0.241 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCHHH-
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHIDL- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~- 179 (429)
..+.++|.|.+|+|||||+.+++.....+...++.+..+.+. ......+...+...-... ..+.+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER---~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGER---SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcc---hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 678899999999999999999998876544444444444432 233444444444321111 011111111
Q ss_pred --------HHHHh---cCCcEEEEecCCCCH
Q 048064 180 --------NFRRL---SCRKVLIVLDDVTCL 199 (429)
Q Consensus 180 --------l~~~l---~~~~~LlVlDdv~~~ 199 (429)
+.+++ .++++||++|++-..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 34444 378999999999533
No 349
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0032 Score=55.04 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+.+|+|.|.+|+||||+|+.++..+..+
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 3589999999999999999999998765
No 350
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.44 E-value=0.0036 Score=66.06 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
+.+.++|+|+.|.||||+.+.++-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999998764
No 351
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.43 E-value=0.0047 Score=53.44 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
.+++.|+|+.|+|||||+..++......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 58899999999999999999999988888644444
No 352
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.43 E-value=0.014 Score=51.74 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=36.7
Q ss_pred HHHHhcCCcEEEEecCCC---CHH---HHHHHhccCCCCCCCCEEEEEeCChhhhhhcCCCeEEEcC
Q 048064 180 NFRRLSCRKVLIVLDDVT---CLN---QIESLVGSLDRLLPESRILITTRNKQVLRNCHINQIYEMK 240 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv~---~~~---~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l~ 240 (429)
+.+.+-..|-+|+.|+-- +.. .+-.++..+.. ..|..||+.|-++.++... .+++.+.
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 777888899999999862 222 23333333221 3466788899999888763 4555543
No 353
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.42 E-value=0.0064 Score=66.83 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=30.6
Q ss_pred hhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 96 ESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 96 ~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.....+|.+.+...+++.|+|++|+||||..-.++...
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc
Confidence 34456777777778899999999999999888777654
No 354
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.11 Score=53.48 Aligned_cols=166 Identities=18% Similarity=0.226 Sum_probs=85.5
Q ss_pred cccchhhHHHHHHHhhc-----------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhh-hhhcCCHHH
Q 048064 91 ELVGVESRVEEIQSLLG-----------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREE-SQKAGGLAF 158 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~-----------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~ 158 (429)
...+++..+..+.+.+. ...++.++|.+|+||||+++.++..+.-|+ +-.++.+. +........
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~----~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHL----LEVDCYELVAESASHTET 477 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCce----EeccHHHHhhcccchhHH
Confidence 34566777777777776 345789999999999999999999875442 21111111 110111111
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCC-------HH------HHHHHhc--cCCCCCCCCEEEEEeC
Q 048064 159 LQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTC-------LN------QIESLVG--SLDRLLPESRILITTR 223 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~-------~~------~~~~l~~--~l~~~~~~~~iiiTtR 223 (429)
-...+ +.+.-+..+.+|.|-|++- .+ .++.++. .....+++..++.|+.
T Consensus 478 kl~~~----------------f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~ 541 (953)
T KOG0736|consen 478 KLQAI----------------FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTS 541 (953)
T ss_pred HHHHH----------------HHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecc
Confidence 11111 1122223556666655531 11 1222222 1121233444444443
Q ss_pred -ChhhhhhcC--CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 048064 224 -NKQVLRNCH--INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV 279 (429)
Q Consensus 224 -~~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 279 (429)
.+.+..... ....+.++.+++++-.++|+......... .....+.++.+|.|.
T Consensus 542 s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n---~~v~~k~~a~~t~gf 597 (953)
T KOG0736|consen 542 SIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN---QDVNLKQLARKTSGF 597 (953)
T ss_pred ccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc---hHHHHHHHHHhcCCC
Confidence 333333221 23568899999999999998876332211 112234555555543
No 355
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.41 E-value=0.0046 Score=53.80 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=33.9
Q ss_pred CcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..++|.+...+.|.-...+.+-+.+.|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHH
Confidence 467888888888877777889999999999999999999886
No 356
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.027 Score=50.69 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHHHhcCCcEEEEecCC----C--CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhh
Q 048064 180 NFRRLSCRKVLIVLDDV----T--CLNQIESLVGSLDRLLPESRILITTRNKQVLRN 230 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv----~--~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~ 230 (429)
+.+.|.+.+=||+||+- | ....+-.++..+.. .|+-|++.|-+-.....
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 77788889999999986 2 22234455555553 38888888887755444
No 357
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.41 E-value=0.0049 Score=52.91 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++|.|++|+||||+|+.++..+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987543
No 358
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.41 E-value=0.017 Score=63.41 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=29.2
Q ss_pred hHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 97 SRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 97 ~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++|...+.+.+++.|+|.+|+||||..-+++...
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~ 113 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL 113 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4455666677778999999999999999777676654
No 359
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.40 E-value=0.0027 Score=56.14 Aligned_cols=26 Identities=42% Similarity=0.710 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|+|++|+|||||++.++..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998764
No 360
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.38 Score=43.60 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=38.2
Q ss_pred CcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhcC-CCeEEEcCCC
Q 048064 187 RKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNK-QVLRNCH-INQIYEMKGL 242 (429)
Q Consensus 187 ~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~-~~~~~~l~~L 242 (429)
+.-++|+|+++. ......++..+....+++.+|++|.+. .+++... ....+.+.+.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 456889999984 457889999998877788777766654 4444432 2345666665
No 361
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.033 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..-+-+|-||.|.|||||+..+.-
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 667889999999999999998875
No 362
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.39 E-value=0.0062 Score=55.84 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|.|++|+|||++|.+++.....+-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5788999999999999999999887654545566655
No 363
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.38 E-value=0.011 Score=59.28 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=22.5
Q ss_pred HHHHhhcCCCEEEEEcCCCcchHHHHHHHHH
Q 048064 101 EIQSLLGAAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 101 ~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
+|.+.+...++|.|+|..|+||||=..++.+
T Consensus 363 ~ll~~ir~n~vvvivgETGSGKTTQl~QyL~ 393 (1042)
T KOG0924|consen 363 QLLSVIRENQVVVIVGETGSGKTTQLAQYLY 393 (1042)
T ss_pred HHHHHHhhCcEEEEEecCCCCchhhhHHHHH
Confidence 3444444689999999999999975555444
No 364
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.38 E-value=0.026 Score=55.33 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCHHH-
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHIDL- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~- 179 (429)
..+.++|.|.+|+|||||+..++.....+....+.+..+.+. ......+.+.+...-... ..+.+....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER---~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC---chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 678899999999999999999998776554444444445443 223444555554321111 111111111
Q ss_pred --------HHHHh---cCCcEEEEecCCCCH
Q 048064 180 --------NFRRL---SCRKVLIVLDDVTCL 199 (429)
Q Consensus 180 --------l~~~l---~~~~~LlVlDdv~~~ 199 (429)
+.+++ +++++||++|++-..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 44444 468999999999544
No 365
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.38 E-value=0.0025 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999876
No 366
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.38 E-value=0.0092 Score=52.79 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+.++|.|.+|+|||+|+.++++.....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d 42 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQDAD 42 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCTTT
T ss_pred cCCEEEEEcCcccccchhhHHHHhccccc
Confidence 67889999999999999999999987533
No 367
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.36 E-value=0.0069 Score=57.06 Aligned_cols=53 Identities=26% Similarity=0.267 Sum_probs=38.8
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcce
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKG 139 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~ 139 (429)
.....+||.....+..--.+. ..+.+.+.|++|.|||+||..+++.+..+.|.
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 345789999887765543332 67999999999999999999999998876553
No 368
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.35 E-value=0.007 Score=54.77 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|.|++|+|||+||.+++......-..++|+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 6789999999999999999998886544455566665
No 369
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.35 E-value=0.0052 Score=53.92 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=30.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIRE 148 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 148 (429)
.|+|+|-||+||||+|..++.++.++-...+.+.+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 58999999999999999988887666555566655554
No 370
>PRK14529 adenylate kinase; Provisional
Probab=96.35 E-value=0.017 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|.|.|++|+||||+++.++..+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999998764
No 371
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.35 E-value=0.014 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..|.|.|++|+||||+|+.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999875
No 372
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.34 E-value=0.0059 Score=51.12 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=29.6
Q ss_pred hHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 97 SRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 97 ~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..+++|.+.+.+ +++++.|+.|+|||||...+...
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 446777777767 99999999999999999988764
No 373
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.34 E-value=0.041 Score=48.85 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....++|.|+.|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999864
No 374
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.32 E-value=0.0082 Score=59.86 Aligned_cols=41 Identities=27% Similarity=0.108 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-eeEEEeechh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-GSCFLENIRE 148 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~ 148 (429)
..+..+|+|++|+|||||++.+++.+..+++ ..+++..+.+
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgE 456 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDE 456 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeC
Confidence 6788999999999999999999998765443 3344444443
No 375
>PRK14528 adenylate kinase; Provisional
Probab=96.32 E-value=0.017 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.+.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998775
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.01 Score=49.94 Aligned_cols=123 Identities=19% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC---CCCCCCHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD---VNVIPHIDLNFRRL 184 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~l~~~l 184 (429)
...+++|.|+.|.|||||++.++..+. .....+++.... .. ....... ...+.-. .......-.+...+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~--~~~~~~~----~~~i~~~~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IA--KLPLEEL----RRRIGYVPQLSGGQRQRVALARAL 95 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-cc--cCCHHHH----HhceEEEeeCCHHHHHHHHHHHHH
Confidence 567999999999999999999987543 233444443211 00 0001110 0001000 00000011155556
Q ss_pred cCCcEEEEecCCC---CHHHHHHHhccCCCC-CCCCEEEEEeCChhhhhhcCCCeEEEc
Q 048064 185 SCRKVLIVLDDVT---CLNQIESLVGSLDRL-LPESRILITTRNKQVLRNCHINQIYEM 239 (429)
Q Consensus 185 ~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~~~~~iiiTtR~~~~~~~~~~~~~~~l 239 (429)
...+-++++|+.. +......+...+... ..+..++++|.+....... ..+.+.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 6678899999984 333333333333211 2246688888777665553 2344444
No 377
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.30 E-value=0.022 Score=53.70 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=53.9
Q ss_pred HHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHH
Q 048064 102 IQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDL 179 (429)
Q Consensus 102 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (429)
|...+.....+.|+|++|+||||+++.++..+.... ...+.+.+..+......+.. ++ .........+.
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v--------~~-~~~~~~~~~~l 211 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYV--------QY-HTSIDVNMTAL 211 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEE--------EE-ecCCCCCHHHH
Confidence 333344778999999999999999999998653211 22233332222110000000 00 00111222334
Q ss_pred HHHHhcCCcEEEEecCCCCHHHHHH
Q 048064 180 NFRRLSCRKVLIVLDDVTCLNQIES 204 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv~~~~~~~~ 204 (429)
+...|+..+=.||+.++...+.+..
T Consensus 212 l~~aLR~~PD~IivGEiR~~Ea~~~ 236 (319)
T PRK13894 212 LKTTLRMRPDRILVGEVRGPEALDL 236 (319)
T ss_pred HHHHhcCCCCEEEEeccCCHHHHHH
Confidence 7777888888999999988876653
No 378
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.30 E-value=0.04 Score=51.62 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=28.7
Q ss_pred ccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHH
Q 048064 92 LVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIF 130 (429)
Q Consensus 92 ~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~ 130 (429)
+-+|..+-.--.++|. +...|.+.|.+|+|||-||.+..
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 4455555555555555 78899999999999998887644
No 379
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.29 E-value=0.055 Score=49.07 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|.|||||.+.++-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6678999999999999999998864
No 380
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.29 E-value=0.0059 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEcCCCcchHHHHHHHHHHhhc
Q 048064 112 LGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
+.|.|++|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 381
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.28 E-value=0.009 Score=53.55 Aligned_cols=36 Identities=36% Similarity=0.386 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 98 RVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 98 ~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+.+...+....+..|+|++|+||||++..+...+
T Consensus 6 Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 344555555444469999999999998888877776
No 382
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.27 E-value=0.037 Score=50.53 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|.|||||++.++...
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999988743
No 383
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.27 E-value=0.0069 Score=49.80 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=25.8
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEE
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFL 143 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 143 (429)
++|.|+|+.|+|||||++.+.+.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999998754 4433343
No 384
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.26 E-value=0.0078 Score=55.29 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+++.|+|.+|+|||+++.+++.....+...++|+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 6789999999999999999999999888866677765
No 385
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.26 E-value=0.0064 Score=59.37 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHhhc------------------CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 89 KNELVGVESRVEEIQSLLG------------------AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~------------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...++|.+..++.+...+. ....+.++|++|+|||++|+.++..+..
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3568999998888865541 2356999999999999999999987643
No 386
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.041 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....|+|+||.|+|||||.+.+.-.
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcC
Confidence 4567999999999999999988864
No 387
>PRK13947 shikimate kinase; Provisional
Probab=96.24 E-value=0.0038 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=22.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|.|+|++|+||||+|+.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 388
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.23 E-value=0.0055 Score=54.68 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=22.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+|+|.|++|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998875
No 389
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.23 E-value=0.032 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6779999999999999999998874
No 390
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.22 E-value=0.0038 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=21.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+|+|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 391
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.22 E-value=0.031 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+++.++||.|+||||....++.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 89999999999999965555555543
No 392
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.22 E-value=0.0035 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=20.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 393
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.19 E-value=0.0036 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 394
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.18 E-value=0.02 Score=58.49 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....++|+|+.|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7889999999999999999988763
No 395
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.18 E-value=0.0073 Score=52.99 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
.+.+++|+|++|+||||||+.+...+.......+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 567899999999999999999999875443334444
No 396
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.16 E-value=0.0039 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=21.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.++|+|++|+|||||++.++..+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999875433
No 397
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.16 E-value=0.0047 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 398
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.14 E-value=0.025 Score=57.11 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 89 KNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...++|....++++.+.+. ....|.|+|++|+||+.+|+.+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 3459999999998888775 6678999999999999999999876
No 399
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.14 E-value=0.0085 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....++|.|+.|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999998875
No 400
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.12 E-value=0.047 Score=49.86 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh---cCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS---RNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHI 177 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~ 177 (429)
..+.++|.|.+|+|||+|+..++++.. ......+.+..+.+. ......+...+...-... .......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR---~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGIT---MEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccc---cHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 678899999999999999999888753 111233334334432 234555555554432111 0111111
Q ss_pred HH---------HHHHh---cCCcEEEEecCCCCHH
Q 048064 178 DL---------NFRRL---SCRKVLIVLDDVTCLN 200 (429)
Q Consensus 178 ~~---------l~~~l---~~~~~LlVlDdv~~~~ 200 (429)
.. +.+++ .++++|+++||+-...
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 11 33443 3689999999996443
No 401
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.11 E-value=0.0041 Score=54.60 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 402
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0048 Score=51.54 Aligned_cols=20 Identities=40% Similarity=0.740 Sum_probs=18.7
Q ss_pred EEEEEcCCCcchHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIF 130 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~ 130 (429)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 403
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.005 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|-||-|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 404
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.09 E-value=0.031 Score=54.81 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCHHH-
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHIDL- 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~- 179 (429)
..+.++|.|.+|+|||+|+.+++..........+.+..+.+. ......+.+.+...-... ....+....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR---~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGER---CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 678899999999999999999988765332233333334332 223444444444321111 111111111
Q ss_pred --------HHHHh---cCCcEEEEecCCCCH
Q 048064 180 --------NFRRL---SCRKVLIVLDDVTCL 199 (429)
Q Consensus 180 --------l~~~l---~~~~~LlVlDdv~~~ 199 (429)
+.+++ +++++||++||+-..
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 44444 458999999999544
No 405
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.09 E-value=0.018 Score=51.69 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 144 (429)
...++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 67899999999999999999988766555 45566665
No 406
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.071 Score=53.75 Aligned_cols=168 Identities=21% Similarity=0.286 Sum_probs=90.9
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh-c
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK-A 153 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 153 (429)
..+-|-...+..+..... .++-+.+||++|+|||-++++++++.. ..+|..+..+.-.. .
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPELISKFP 259 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHHHHHhcc
Confidence 355666666666666543 567899999999999999999998764 33444433321110 0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC-cEEEEecCCCCHH------------HHHHHhccCCCCCCCCEEE-
Q 048064 154 GGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR-KVLIVLDDVTCLN------------QIESLVGSLDRLLPESRIL- 219 (429)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~------------~~~~l~~~l~~~~~~~~ii- 219 (429)
.......+. .+.+..+.+ +.++.+|+++... ....++..+...++.+++|
T Consensus 260 gEte~~LR~----------------~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~viv 323 (693)
T KOG0730|consen 260 GETESNLRK----------------AFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIV 323 (693)
T ss_pred cchHHHHHH----------------HHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEE
Confidence 111111111 233445556 8899999986432 1223333333334444433
Q ss_pred -EEeCChhhhh-hc---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 220 -ITTRNKQVLR-NC---HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 220 -iTtR~~~~~~-~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
-||+.+.-+. .. .....+.+.-.+..+-.++++...-.-... .......++..+.|.-
T Consensus 324 l~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred EEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc---chhhHHHHHHHccchh
Confidence 3665543221 11 233456666667677777776654222222 1123556666776664
No 407
>PRK14530 adenylate kinase; Provisional
Probab=96.09 E-value=0.0059 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.+.|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999876
No 408
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.08 E-value=0.013 Score=52.75 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
....+.|.|++|+|||+|+.+++.........++|+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 5788999999999999999998876544445566665
No 409
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.07 E-value=0.014 Score=58.53 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=67.0
Q ss_pred hHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCC-C---
Q 048064 97 SRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDV-N--- 172 (429)
Q Consensus 97 ~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--- 172 (429)
+..++|...+...+++.|.|..|+||||=.-++..+..-.-...+-+..-+.. ....+++......+... .
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRV-----AavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRV-----AAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchH-----HHHHHHHHHHHHhCCCcCceee
Confidence 44556666666899999999999999987777776532111122333322222 12334444444443320 0
Q ss_pred -------CCCC---H----H--HHHHHhcC----CcEEEEecCCCCHHH----HHHHhccCCCCCCCCEEEEEeCCh
Q 048064 173 -------VIPH---I----D--LNFRRLSC----RKVLIVLDDVTCLNQ----IESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 173 -------~~~~---~----~--~l~~~l~~----~~~LlVlDdv~~~~~----~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
..+. + + .+++.+.+ +--+||||++++-.. +-.++..+....+..|+||+|-.-
T Consensus 129 Y~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATl 205 (674)
T KOG0922|consen 129 YTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATL 205 (674)
T ss_pred eEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 0000 0 0 05555544 345899999985542 222333333335667999977543
No 410
>PRK06217 hypothetical protein; Validated
Probab=96.07 E-value=0.0048 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|.|.|.+|+||||+|+.++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998763
No 411
>PRK13949 shikimate kinase; Provisional
Probab=96.06 E-value=0.0059 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+.|.|+|++|+||||+++.++..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998864
No 412
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.05 E-value=0.012 Score=52.69 Aligned_cols=30 Identities=20% Similarity=0.154 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
...++.|+|++|+|||+||.+++.......
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~ 47 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPG 47 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhccc
Confidence 578999999999999999999988765443
No 413
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.04 E-value=0.042 Score=58.15 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=26.0
Q ss_pred hhcCCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 105 LLGAAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 105 ~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.+.+++.|.|.+|+||||+++.+...+...
T Consensus 364 i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 364 VTGSGDIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred HhcCCCEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 33356799999999999999999988766543
No 414
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.067 Score=48.16 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....++|.|+.|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999998753
No 415
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.03 E-value=0.032 Score=47.47 Aligned_cols=52 Identities=10% Similarity=0.090 Sum_probs=34.9
Q ss_pred HHHHhcCCcEEEEecCC----CCHHHHHHHhccCC-CCCCCCEEEEEeCChhhhhhcC
Q 048064 180 NFRRLSCRKVLIVLDDV----TCLNQIESLVGSLD-RLLPESRILITTRNKQVLRNCH 232 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv----~~~~~~~~l~~~l~-~~~~~~~iiiTtR~~~~~~~~~ 232 (429)
+.+.+-+++-+|+-|+- |....|+- +..+. -...|..|+++|-+..+...+.
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~i-m~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEI-MRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHH-HHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 67777789999999975 33333332 22222 1246888999999998887763
No 416
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.03 E-value=0.0059 Score=54.43 Aligned_cols=24 Identities=21% Similarity=-0.004 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..++++|.|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998877
No 417
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.02 E-value=0.014 Score=53.79 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCF 142 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 142 (429)
+..++.|.|.+|.|||||+..+...+.......+.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 78899999999999999999999988766544443
No 418
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.02 E-value=0.036 Score=54.76 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLS 165 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (429)
..+.++|.|.+|+|||+|+..++..+.+.....+.+..+++. ......+...++.
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGER---grEv~efi~~~~~ 214 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER---TREGNDLYMEMKE 214 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccC---chHHHHHHHHHHh
Confidence 678899999999999999999988754332334444444433 2234445554444
No 419
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.02 E-value=0.006 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 420
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.01 E-value=0.032 Score=58.30 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 778999999999999999998876
No 421
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.011 Score=49.48 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCF 142 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 142 (429)
...++.+.|.+|.||||+|.++.+.+....-....
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45689999999999999999999998766544433
No 422
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.99 E-value=0.011 Score=47.08 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.+-++..+|++|+|||.+++.+++.+
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34567899999999999999999874
No 423
>PRK13948 shikimate kinase; Provisional
Probab=95.98 E-value=0.0072 Score=52.05 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+.|.++|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998864
No 424
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.98 E-value=0.0076 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=22.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.|.++|++|+||||+|+.++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999987543
No 425
>PRK13764 ATPase; Provisional
Probab=95.98 E-value=0.033 Score=56.77 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~ 186 (429)
....+.|+|++|+||||+++.+++.+..+...+..+.+..+... .... .+.. ........ ....|+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~-~~~i--------~q~~---~~~~~~~~~~~~lLR~ 323 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQV-PPEI--------TQYS---KLEGSMEETADILLLV 323 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccC-CCcc--------eEEe---eccccHHHHHHHHHhh
Confidence 56779999999999999999999887644322223332222111 0000 0000 00011111 2233667
Q ss_pred CcEEEEecCCCCHHHHHHH
Q 048064 187 RKVLIVLDDVTCLNQIESL 205 (429)
Q Consensus 187 ~~~LlVlDdv~~~~~~~~l 205 (429)
++=.+++|++.+.+.++.+
T Consensus 324 rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 324 RPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred CCCEEEECCCCCHHHHHHH
Confidence 7889999999988887654
No 426
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.98 E-value=0.0047 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHh
Q 048064 112 LGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
++|+|++|+||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 427
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0059 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999984
No 428
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.98 E-value=0.0063 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEcCCCcchHHHHHHHHHHh
Q 048064 112 LGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 429
>PHA02774 E1; Provisional
Probab=95.97 E-value=0.025 Score=56.65 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=30.0
Q ss_pred hHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 97 SRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 97 ~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.-+..|..++. ...-+.|+||+|+|||.+|..+++-+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34566666666 345799999999999999999998764
No 430
>PRK14527 adenylate kinase; Provisional
Probab=95.96 E-value=0.0072 Score=52.68 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++.|+|++|+||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 431
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.96 E-value=0.0067 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999865
No 432
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.95 E-value=0.011 Score=47.17 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=27.2
Q ss_pred HHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 101 EIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 101 ~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|.+.+....+|.+.|.=|.||||+++.++..+
T Consensus 7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 445555578899999999999999999999865
No 433
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.95 E-value=0.006 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.8
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
++++|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999854
No 434
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.94 E-value=0.014 Score=54.30 Aligned_cols=52 Identities=29% Similarity=0.290 Sum_probs=40.7
Q ss_pred CCCCcccchhhHHHH---HHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc
Q 048064 87 DSKNELVGVESRVEE---IQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFK 138 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~---l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 138 (429)
.....|||.....+. +.+++. ..+.|.|+|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 556789998876553 334443 6789999999999999999999999876543
No 435
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.94 E-value=0.087 Score=49.51 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|.|||||.+.++..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999998864
No 436
>PRK13946 shikimate kinase; Provisional
Probab=95.93 E-value=0.0076 Score=52.19 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+.|++.|++|+||||+++.+++++.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999999873
No 437
>PRK04328 hypothetical protein; Provisional
Probab=95.93 E-value=0.014 Score=53.11 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5788999999999999999998887544445556654
No 438
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.92 E-value=0.037 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
+...++|+|+.|.|||||++.+...
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 7789999999999999999988863
No 439
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.92 E-value=0.012 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++.|+|++|+|||+||.+++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 56789999999999999999998654
No 440
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.92 E-value=0.0092 Score=53.44 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFK 138 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 138 (429)
.+..+.++||+|+||||+++.+..++..+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 4667899999999999999999998876654
No 441
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.011 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++.|.||+|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999876
No 442
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.90 E-value=0.013 Score=49.73 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..++++|+|+.|+|||||+..+...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 35689999999999999999999887653
No 443
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.90 E-value=0.0096 Score=56.40 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=38.5
Q ss_pred CCCCcccchhhHHHHHHHhh-c-CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 87 DSKNELVGVESRVEEIQSLL-G-AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l-~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.+...++|.+..++.+.-.+ . +..-+.+.|++|+||||+|+.++.-+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 44567899999999877544 3 55789999999999999999998854
No 444
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.90 E-value=0.0069 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.+++.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 445
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.90 E-value=0.011 Score=55.47 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+++.|+|++|+||||||.+++......-..++|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 5678999999999999999999888766555556653
No 446
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.90 E-value=0.013 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..++++|.|+.|.||||+.+.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998765
No 447
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.89 E-value=0.012 Score=55.26 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=42.2
Q ss_pred CCcccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 89 KNELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...|+|.++.++++.+.+. ..+++.++||.|.|||||+..+.+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 3589999999999999886 67899999999999999999988876544
No 448
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.88 E-value=0.0032 Score=54.58 Aligned_cols=21 Identities=29% Similarity=0.097 Sum_probs=18.8
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
++.|+|+.|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999884
No 449
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.88 E-value=0.0047 Score=54.39 Aligned_cols=24 Identities=38% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
+..+++|+|+.|.|||||.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 347899999999999999999984
No 450
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.87 E-value=0.022 Score=46.09 Aligned_cols=34 Identities=18% Similarity=-0.019 Sum_probs=24.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC--cceeEEEe
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN--FKGSCFLE 144 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~ 144 (429)
.+.|+|++|+|||+.+..++.+.... ....+++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 47899999999999999888876542 33444443
No 451
>PRK15453 phosphoribulokinase; Provisional
Probab=95.87 E-value=0.013 Score=53.53 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...+|+|.|.+|+||||+|+.+++.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999987654
No 452
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.86 E-value=0.021 Score=54.27 Aligned_cols=94 Identities=20% Similarity=0.115 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh-cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK-AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (429)
....+.|+|++|+||||++..+...+..+ ...+.+.+..+.... ..+...+ +..............+.+...|+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~~---~~~~~~~~~~~~~~~~ll~~~LR~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVHL---LASKGGQGRAKVTTQDLIEACLRL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEEE---EecCCCCCcCcCcHHHHHHHHhcc
Confidence 78899999999999999999998876443 223333222221100 0000000 000000001112223347778888
Q ss_pred CcEEEEecCCCCHHHHHHH
Q 048064 187 RKVLIVLDDVTCLNQIESL 205 (429)
Q Consensus 187 ~~~LlVlDdv~~~~~~~~l 205 (429)
.+=.+|++++...+.+..+
T Consensus 235 ~PD~IivGEiR~~ea~~~l 253 (332)
T PRK13900 235 RPDRIIVGELRGAEAFSFL 253 (332)
T ss_pred CCCeEEEEecCCHHHHHHH
Confidence 8999999999988766543
No 453
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.86 E-value=0.013 Score=56.91 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.2
Q ss_pred CCCcccchhhHHHHHHHhhc--------------------CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 88 SKNELVGVESRVEEIQSLLG--------------------AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~--------------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
....++|.+...+.+...+. ....+.++|++|+|||++|+.++..+.
T Consensus 75 L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 75 LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred hcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 34668999988888866541 135799999999999999999998764
No 454
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.85 E-value=0.0069 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.+-|.|+|-||+|||||+.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4568999999999999999999653
No 455
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.84 E-value=0.03 Score=58.03 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....++|+|+.|.|||||++.+..-+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 77899999999999999999987754
No 456
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.84 E-value=0.05 Score=54.84 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-------e-eEEEeechhhhhhcCCH------------HHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFK-------G-SCFLENIREESQKAGGL------------AFLQQKLLSEV 167 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-------~-~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~ 167 (429)
....|+|+|+.|+|||||.+.+.......-. . ..++..-.........+ ....+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 6778999999999999999999765432210 0 11111110000000001 22222222222
Q ss_pred hcCC-CCCCCHHH----------HHHHhcCCcEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhcCC
Q 048064 168 LKDV-NVIPHIDL----------NFRRLSCRKVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRNKQVLRNCHI 233 (429)
Q Consensus 168 ~~~~-~~~~~~~~----------l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~~ 233 (429)
+-.. .....+.. +...+-..+-+||||+-- +.+..+.+...+.. -.+.||+.|-++.......
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhc-
Confidence 2211 01111111 555566788899999874 33444444444442 2334888888888877764
Q ss_pred CeEEEcCC
Q 048064 234 NQIYEMKG 241 (429)
Q Consensus 234 ~~~~~l~~ 241 (429)
.+++.+.+
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
Confidence 45555554
No 457
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.83 E-value=0.019 Score=51.56 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+|+|.|+||.|||||...+...+.+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 56789999999999999999999988765
No 458
>PLN02674 adenylate kinase
Probab=95.83 E-value=0.034 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...|.|.|++|+||||+|+.++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3568899999999999999998865
No 459
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.83 E-value=0.016 Score=58.19 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=35.9
Q ss_pred HHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 99 VEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 99 ~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
+..|.++|. ...++.|.|++|+|||||+.++++....+-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 445666665 6789999999999999999999998766655555554
No 460
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.83 E-value=0.084 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....++|+|+.|+|||||++.++.-
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl 514 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGL 514 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999988763
No 461
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.23 Score=53.28 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=39.6
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
+.+=|-+..+++|.++.. .++-|..+|++|.|||-.|++++.........+.|+
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisff 333 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFF 333 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchh
Confidence 344556667777777653 577899999999999999999998766555444443
No 462
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.82 E-value=0.037 Score=54.45 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHhcCCcEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhc
Q 048064 180 NFRRLSCRKVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRNKQVLRNC 231 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 231 (429)
|.+.|=.+|-||.||+-- +.+....+-..|..+..+ .++|++++.+.++.+
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGV 285 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhH
Confidence 334445688999999984 445555555555433333 688899998777664
No 463
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.81 E-value=0.0092 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...|+|+|+.|.||||+++.++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4579999999999999999999875
No 464
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.80 E-value=0.083 Score=54.35 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..++..|.|.+|+||||++..+...+..
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999998876643
No 465
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=95.80 E-value=0.051 Score=57.47 Aligned_cols=151 Identities=14% Similarity=0.071 Sum_probs=80.2
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh--hcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCC-C--
Q 048064 99 VEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI--SRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVN-V-- 173 (429)
Q Consensus 99 ~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~-- 173 (429)
.+++.+.+...+++.|.|..|+||||-+-++.-+. ...-.+.+....-+..+ ...+++.+......... .
T Consensus 178 r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIs-----AIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 178 RDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRIS-----AISVAERVAKERGESLGEEVG 252 (924)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHH-----HHHHHHHHHHHhccccCCeee
Confidence 44555555578999999999999998877765532 22222233333223222 22333333332211100 0
Q ss_pred --------C--------CCHHHHHHHhcCCcE-----EEEecCCCCHH----HHHHHhccCCCCCCCCEEEEE---eCCh
Q 048064 174 --------I--------PHIDLNFRRLSCRKV-----LIVLDDVTCLN----QIESLVGSLDRLLPESRILIT---TRNK 225 (429)
Q Consensus 174 --------~--------~~~~~l~~~l~~~~~-----LlVlDdv~~~~----~~~~l~~~l~~~~~~~~iiiT---tR~~ 225 (429)
. .....+.+.|.+.+. -+|+|+|++-+ -+--++..+....++.+||+- -..+
T Consensus 253 Yqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae 332 (924)
T KOG0920|consen 253 YQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAE 332 (924)
T ss_pred EEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchH
Confidence 0 011226666766543 69999996432 222222233333588898873 3333
Q ss_pred hhhhhcCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 226 QVLRNCHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 226 ~~~~~~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
.....++...++.+++.+.+-..-++...
T Consensus 333 ~fs~YF~~~pvi~i~grtfpV~~~fLEDi 361 (924)
T KOG0920|consen 333 LFSDYFGGCPVITIPGRTFPVKEYFLEDI 361 (924)
T ss_pred HHHHHhCCCceEeecCCCcchHHHHHHHH
Confidence 33444566667888887766555444443
No 466
>PRK14531 adenylate kinase; Provisional
Probab=95.79 E-value=0.0093 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.9
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.|.|+|++|+||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 467
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.78 E-value=0.013 Score=54.27 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=28.0
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeech
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIR 147 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 147 (429)
+.|+|+|-||+||||++..++..+...- ..+.+.+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~~VlliD~D 37 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-KKVMIVGCD 37 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 5789999999999999999999876653 334444443
No 468
>PLN02200 adenylate kinase family protein
Probab=95.78 E-value=0.0088 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.+++|.|++|+||||+|+.++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998865
No 469
>PRK05439 pantothenate kinase; Provisional
Probab=95.77 E-value=0.015 Score=54.43 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.+-+|+|.|.+|+||||+|+.+...+..
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999886653
No 470
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.76 E-value=0.062 Score=56.70 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++.|.|.+|+||||+++.+...+...
T Consensus 337 ~~~~~iitGgpGTGKTt~l~~i~~~~~~~ 365 (720)
T TIGR01448 337 QHKVVILTGGPGTGKTTITRAIIELAEEL 365 (720)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56799999999999999999998876544
No 471
>PRK06761 hypothetical protein; Provisional
Probab=95.76 E-value=0.014 Score=53.79 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+++.|.|++|+||||+++.+++.+...
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 3679999999999999999999987654
No 472
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.76 E-value=0.016 Score=52.05 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
....+.|.|++|+||||||.+++.....+-..++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 5679999999999999999888776644434455554
No 473
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.76 E-value=0.25 Score=49.57 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=34.9
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|....+.++.+.+. ....+.|.|.+|+||+++|+.+....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 458888877777776654 55678999999999999998887754
No 474
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.76 E-value=0.25 Score=47.70 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.+|.++|.-|.||||.|..+++.++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~ 127 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK 127 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc
Confidence 36789999999999999999999988763
No 475
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.75 E-value=0.042 Score=55.40 Aligned_cols=50 Identities=30% Similarity=0.398 Sum_probs=35.1
Q ss_pred HHHHhcCCcEEEEecCCC---CHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhc
Q 048064 180 NFRRLSCRKVLIVLDDVT---CLNQIESLVGSLDRLLPESRILITTRNKQVLRNC 231 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 231 (429)
|.+.|-.++=+|+||+-- +.+.+.+|-..+.. -+| .+||.|-++..+..+
T Consensus 164 LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V 216 (530)
T COG0488 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV 216 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH
Confidence 566667788899999985 33455555555543 334 788899999887775
No 476
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.75 E-value=0.014 Score=54.11 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+.+|+|.|+.|+||||+|+.+...+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999988776654
No 477
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.75 E-value=0.008 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=17.9
Q ss_pred EEEEcCCCcchHHHHHHHHHH
Q 048064 112 LGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~ 132 (429)
|+|.|.+|+|||||+..++.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 478
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.74 E-value=0.08 Score=54.30 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..++..|.|.+|+||||++..+...+..
T Consensus 159 ~~~~~vitGgpGTGKTt~v~~ll~~l~~ 186 (586)
T TIGR01447 159 KSNFSLITGGPGTGKTTTVARLLLALVK 186 (586)
T ss_pred hCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998876543
No 479
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.73 E-value=0.014 Score=48.92 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+++|+|+.|+|||||+..+...++..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999988655
No 480
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.73 E-value=0.0092 Score=47.34 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEcCCCcchHHHHHHHHHH
Q 048064 112 LGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~ 132 (429)
|.|.|.+|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999874
No 481
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.73 E-value=0.014 Score=54.85 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+++-|+|++|+||||||.+++.........++|+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4678999999999999999999987766555566664
No 482
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.70 E-value=0.016 Score=49.54 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=32.2
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI 146 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 146 (429)
..|.|-|++|+|||+|..+.+..++++|...+...++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 5899999999999999999999999988876665544
No 483
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.70 E-value=0.23 Score=45.56 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHH-HhhcCcceeEEE
Q 048064 109 APLLGIWGIGGIGKTTIARVIFN-RISRNFKGSCFL 143 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~-~~~~~f~~~~~~ 143 (429)
+-+..|+|+.|+|||+|.+.+.. ++-+.-+..+|+
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfF 122 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFF 122 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEE
Confidence 34567899999999999998765 344444444433
No 484
>PRK13975 thymidylate kinase; Provisional
Probab=95.70 E-value=0.01 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..|+|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998853
No 485
>PRK13808 adenylate kinase; Provisional
Probab=95.69 E-value=0.035 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|.|.|++|+||||++..++..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.68 E-value=0.026 Score=54.53 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSC 141 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 141 (429)
....+.|.|+||+|||+|.+.+.+.++.....++
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~ 54 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVL 54 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceEE
Confidence 6778999999999999999999998866533333
No 487
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.013 Score=51.91 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....++|+|++|+|||||++.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 678899999999999999999886
No 488
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.68 E-value=0.19 Score=50.13 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|....++.+...+. ....+.|+|..|+||+++|+.+....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 186 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS 186 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 468999988888877665 44567899999999999999887653
No 489
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.68 E-value=0.075 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....++|+|+.|+|||||++.++.-
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999988763
No 490
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.67 E-value=0.012 Score=53.16 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=22.2
Q ss_pred EEcCCCcchHHHHHHHHHHhhcCcceeEEEeech
Q 048064 114 IWGIGGIGKTTIARVIFNRISRNFKGSCFLENIR 147 (429)
Q Consensus 114 I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 147 (429)
|.||+|+||||+++.+.+.+.... ..+.+.|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~-~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG-RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-CCceEEEcc
Confidence 689999999999999999876553 334444444
No 491
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.67 E-value=0.047 Score=49.82 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
++-++.+||.+|+||.-.++.+++.+.
T Consensus 109 KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 455788999999999999999998753
No 492
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.66 E-value=0.011 Score=49.71 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
+.|.++|+.|+||||+.+.+++.+.-+|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 5689999999999999999999875554
No 493
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.63 E-value=0.011 Score=45.87 Aligned_cols=23 Identities=35% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIF 130 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~ 130 (429)
....++|.|++|+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45689999999999999999976
No 494
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.62 E-value=0.016 Score=53.33 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=28.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
++++|+|.+|+|||||+..++..+.++. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988776 444443
No 495
>PRK06851 hypothetical protein; Provisional
Probab=95.62 E-value=0.092 Score=50.26 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=34.6
Q ss_pred cchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEe
Q 048064 93 VGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLE 144 (429)
Q Consensus 93 vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 144 (429)
-|.-.-+..+.+- -.+.+.|.|++|+|||||++.++....++ +...++.+
T Consensus 200 ~G~~s~~~~l~~~--~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 200 KGAVDFVPSLTEG--VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred CcHHhhHHhHhcc--cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3444444444422 46789999999999999999999987554 44444444
No 496
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.61 E-value=0.017 Score=54.23 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=26.8
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
+++.+.|-||+||||+|...+-...+.-.....+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 6899999999999999999988876654434444
No 497
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.057 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++++||+|.||||+|..+.+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 677999999999999999987665
No 498
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.61 E-value=0.011 Score=51.39 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 578999999999999999997754
No 499
>PRK14532 adenylate kinase; Provisional
Probab=95.60 E-value=0.0097 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEcCCCcchHHHHHHHHHHh
Q 048064 112 LGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
|.|.|++|+||||+|+.++++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 500
>PRK13768 GTPase; Provisional
Probab=95.59 E-value=0.017 Score=52.74 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.++.|.|++|+||||++..++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578999999999999999999877654
Done!