Query 048064
Match_columns 429
No_of_seqs 282 out of 2745
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 10:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.9E-42 3.1E-46 345.8 21.9 292 93-397 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-38 4.7E-43 352.7 22.6 297 87-396 121-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.5E-37 5.2E-42 321.0 17.3 296 90-416 128-459 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.5E-37 2.2E-41 313.9 21.3 292 87-392 121-448 (591)
5 2qen_A Walker-type ATPase; unk 99.8 3.7E-19 1.3E-23 169.8 24.4 286 87-390 9-349 (350)
6 2fna_A Conserved hypothetical 99.8 1.4E-19 4.8E-24 173.2 18.7 286 87-389 10-356 (357)
7 1w5s_A Origin recognition comp 99.8 1.9E-17 6.4E-22 161.7 23.4 289 87-385 19-387 (412)
8 3jrn_A AT1G72930 protein; TIR 99.8 2E-19 6.7E-24 150.8 6.2 82 2-85 93-175 (176)
9 3ozi_A L6TR; plant TIR domain, 99.7 1.1E-18 3.9E-23 148.5 4.1 79 3-81 122-201 (204)
10 2qby_B CDC6 homolog 3, cell di 99.7 5.2E-15 1.8E-19 143.0 25.1 268 89-374 19-339 (384)
11 2qby_A CDC6 homolog 1, cell di 99.7 1.2E-14 4.3E-19 140.2 23.9 277 87-374 17-348 (386)
12 1fnn_A CDC6P, cell division co 99.7 3.6E-14 1.2E-18 137.2 25.6 299 87-396 14-387 (389)
13 2v1u_A Cell division control p 99.6 9.3E-14 3.2E-18 134.1 27.9 273 87-374 16-351 (387)
14 1njg_A DNA polymerase III subu 99.5 5.7E-13 1.9E-17 119.7 18.4 185 87-290 20-231 (250)
15 2chg_A Replication factor C sm 99.5 8.8E-13 3E-17 116.8 14.5 185 87-288 14-205 (226)
16 1sxj_B Activator 1 37 kDa subu 99.3 3.1E-11 1.1E-15 113.4 16.8 182 87-285 18-207 (323)
17 1hqc_A RUVB; extended AAA-ATPa 99.3 3.5E-10 1.2E-14 106.3 22.1 249 87-378 9-302 (324)
18 1iqp_A RFCS; clamp loader, ext 99.3 4.9E-11 1.7E-15 112.2 14.8 186 87-289 22-214 (327)
19 1jr3_A DNA polymerase III subu 99.2 8.9E-10 3E-14 105.6 19.6 190 87-288 13-222 (373)
20 2chq_A Replication factor C sm 99.2 4.7E-10 1.6E-14 105.1 16.7 185 87-288 14-205 (319)
21 3pfi_A Holliday junction ATP-d 99.1 6E-09 2.1E-13 98.5 18.8 254 87-381 26-320 (338)
22 1jbk_A CLPB protein; beta barr 99.0 6.1E-10 2.1E-14 95.8 9.7 149 87-251 19-194 (195)
23 3h4m_A Proteasome-activating n 99.0 7.8E-09 2.7E-13 95.2 17.5 178 87-287 14-231 (285)
24 3te6_A Regulatory protein SIR3 99.0 9.4E-09 3.2E-13 95.2 17.7 162 90-256 20-212 (318)
25 3bos_A Putative DNA replicatio 99.0 8E-10 2.7E-14 99.0 9.1 173 88-288 26-218 (242)
26 1sxj_D Activator 1 41 kDa subu 99.0 1.1E-08 3.8E-13 97.2 17.0 193 87-287 34-235 (353)
27 1sxj_A Activator 1 95 kDa subu 99.0 1.4E-08 4.7E-13 101.6 17.8 187 87-287 36-252 (516)
28 3d8b_A Fidgetin-like protein 1 99.0 6.8E-08 2.3E-12 91.9 21.2 200 64-289 62-297 (357)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.0 4.2E-08 1.4E-12 89.0 18.8 180 88-288 4-223 (262)
30 2qp9_X Vacuolar protein sortin 98.9 6.7E-08 2.3E-12 91.8 19.4 178 87-288 48-262 (355)
31 3eie_A Vacuolar protein sortin 98.9 7.6E-08 2.6E-12 90.2 19.0 180 87-288 15-229 (322)
32 3b9p_A CG5977-PA, isoform A; A 98.9 5.3E-08 1.8E-12 90.1 17.7 178 87-288 18-234 (297)
33 3uk6_A RUVB-like 2; hexameric 98.9 3.4E-08 1.2E-12 94.4 16.6 195 89-288 43-304 (368)
34 2z4s_A Chromosomal replication 98.9 1.4E-08 4.6E-13 99.4 13.9 181 89-287 104-306 (440)
35 1sxj_E Activator 1 40 kDa subu 98.9 3E-08 1E-12 94.2 15.4 197 87-288 11-238 (354)
36 1d2n_A N-ethylmaleimide-sensit 98.9 1.1E-07 3.8E-12 86.9 17.9 165 89-278 32-228 (272)
37 3pvs_A Replication-associated 98.9 2.7E-08 9.3E-13 97.2 14.4 178 87-288 23-216 (447)
38 2zan_A Vacuolar protein sortin 98.9 1.2E-07 4.2E-12 92.8 18.9 181 87-288 131-346 (444)
39 1xwi_A SKD1 protein; VPS4B, AA 98.9 1.6E-07 5.4E-12 88.0 18.9 182 87-289 9-225 (322)
40 3syl_A Protein CBBX; photosynt 98.9 6.1E-08 2.1E-12 90.3 16.1 146 91-257 32-219 (309)
41 3vfd_A Spastin; ATPase, microt 98.8 2.5E-07 8.4E-12 89.1 19.2 180 87-288 112-327 (389)
42 1l8q_A Chromosomal replication 98.8 2.3E-07 8E-12 87.0 18.0 178 88-286 9-207 (324)
43 3u61_B DNA polymerase accessor 98.8 1.3E-07 4.3E-12 88.8 16.2 177 87-285 23-214 (324)
44 1a5t_A Delta prime, HOLB; zinc 98.7 4.8E-07 1.6E-11 85.2 18.6 164 96-286 8-204 (334)
45 2p65_A Hypothetical protein PF 98.7 2.3E-07 7.8E-12 79.1 13.5 49 87-135 19-69 (187)
46 4b4t_J 26S protease regulatory 98.7 4E-07 1.4E-11 86.5 15.5 168 89-280 147-354 (405)
47 3cf0_A Transitional endoplasmi 98.7 7.7E-07 2.6E-11 82.5 16.6 172 87-282 12-223 (301)
48 1sxj_C Activator 1 40 kDa subu 98.6 3.1E-07 1E-11 86.8 14.0 181 89-286 24-211 (340)
49 1in4_A RUVB, holliday junction 98.6 3.2E-06 1.1E-10 79.5 19.4 253 89-382 24-318 (334)
50 4b4t_H 26S protease regulatory 98.6 1.6E-06 5.5E-11 83.5 17.4 168 90-280 209-415 (467)
51 4b4t_L 26S protease subunit RP 98.6 1.3E-06 4.4E-11 84.3 16.6 168 89-280 180-387 (437)
52 4b4t_K 26S protease regulatory 98.6 7.2E-07 2.5E-11 85.9 14.5 168 89-280 171-379 (428)
53 4b4t_M 26S protease regulatory 98.6 5.4E-07 1.8E-11 86.9 13.5 168 88-279 179-386 (434)
54 3n70_A Transport activator; si 98.6 1.3E-07 4.5E-12 77.6 7.7 109 91-225 2-116 (145)
55 1lv7_A FTSH; alpha/beta domain 98.6 9.4E-07 3.2E-11 79.9 13.8 177 87-286 9-224 (257)
56 3pxg_A Negative regulator of g 98.5 5.1E-07 1.8E-11 88.9 12.0 145 88-255 178-338 (468)
57 1qvr_A CLPB protein; coiled co 98.5 5E-07 1.7E-11 95.8 12.6 149 87-254 167-344 (854)
58 4b4t_I 26S protease regulatory 98.5 1.4E-06 4.7E-11 83.2 14.2 168 89-280 181-388 (437)
59 3hu3_A Transitional endoplasmi 98.5 2.3E-06 8E-11 84.3 16.2 175 90-287 204-415 (489)
60 1ofh_A ATP-dependent HSL prote 98.5 2.3E-06 7.8E-11 79.4 15.0 45 90-134 15-75 (310)
61 1r6b_X CLPA protein; AAA+, N-t 98.4 3.7E-06 1.3E-10 88.2 16.9 150 87-255 183-362 (758)
62 3ec2_A DNA replication protein 98.4 1.7E-06 6E-11 73.5 10.7 40 95-134 19-63 (180)
63 2ce7_A Cell division protein F 98.4 9.8E-06 3.3E-10 79.3 17.0 170 88-280 14-221 (476)
64 2gno_A DNA polymerase III, gam 98.4 2.8E-06 9.5E-11 78.6 11.8 144 94-255 1-152 (305)
65 2bjv_A PSP operon transcriptio 98.3 2.7E-06 9.3E-11 77.2 11.4 45 90-134 6-54 (265)
66 1ojl_A Transcriptional regulat 98.3 7.5E-06 2.6E-10 75.8 14.1 44 90-133 2-49 (304)
67 3co5_A Putative two-component 98.3 3.6E-07 1.2E-11 74.7 4.4 44 90-133 4-51 (143)
68 2w58_A DNAI, primosome compone 98.3 2.6E-06 8.8E-11 73.9 10.1 57 87-143 22-88 (202)
69 2r62_A Cell division protease 98.3 3.4E-07 1.2E-11 83.3 4.6 149 87-255 8-196 (268)
70 4fcw_A Chaperone protein CLPB; 98.3 3E-06 1E-10 78.7 11.2 47 90-136 17-74 (311)
71 2c9o_A RUVB-like 1; hexameric 98.3 2.7E-05 9.3E-10 76.4 18.5 95 189-286 297-409 (456)
72 3cf2_A TER ATPase, transitiona 98.3 7.2E-06 2.5E-10 84.9 14.1 167 90-280 204-407 (806)
73 3pxi_A Negative regulator of g 98.3 3.8E-06 1.3E-10 88.0 12.0 144 89-255 179-338 (758)
74 1ixz_A ATP-dependent metallopr 98.3 2.1E-05 7.3E-10 70.7 15.4 171 87-280 13-221 (254)
75 1iy2_A ATP-dependent metallopr 98.2 3.1E-05 1.1E-09 70.6 16.0 171 87-280 37-245 (278)
76 2x8a_A Nuclear valosin-contain 98.2 2.3E-05 7.9E-10 71.3 14.2 147 89-255 9-191 (274)
77 3pxi_A Negative regulator of g 98.1 7.3E-06 2.5E-10 85.8 10.7 143 90-255 491-675 (758)
78 2kjq_A DNAA-related protein; s 98.1 7.6E-06 2.6E-10 67.2 7.7 45 90-135 18-62 (149)
79 3t15_A Ribulose bisphosphate c 98.1 2.6E-05 8.8E-10 71.8 12.1 28 108-135 35-62 (293)
80 2dhr_A FTSH; AAA+ protein, hex 98.1 6.3E-05 2.1E-09 74.1 15.3 171 87-280 28-236 (499)
81 2r44_A Uncharacterized protein 98.1 3.8E-05 1.3E-09 72.0 12.9 46 90-135 27-72 (331)
82 3m6a_A ATP-dependent protease 98.0 8.4E-05 2.9E-09 74.4 15.4 154 91-255 82-266 (543)
83 1um8_A ATP-dependent CLP prote 97.9 0.00013 4.3E-09 69.7 13.1 26 109-134 72-97 (376)
84 1ypw_A Transitional endoplasmi 97.8 7.6E-05 2.6E-09 78.3 11.6 147 89-255 203-385 (806)
85 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00021 7.1E-09 74.9 13.0 44 90-133 458-512 (758)
86 2qgz_A Helicase loader, putati 97.5 0.00018 6E-09 66.6 7.7 55 89-143 123-187 (308)
87 3cf2_A TER ATPase, transitiona 97.5 0.00033 1.1E-08 72.7 10.3 169 87-279 474-682 (806)
88 1qvr_A CLPB protein; coiled co 97.5 0.00027 9.2E-09 74.9 9.9 46 90-135 558-614 (854)
89 3h16_A TIR protein; bacteria T 97.5 2.2E-05 7.5E-10 64.8 0.8 29 3-31 105-133 (154)
90 1jr3_D DNA polymerase III, del 97.4 0.0035 1.2E-07 58.8 15.6 156 108-286 17-184 (343)
91 1ye8_A Protein THEP1, hypothet 97.4 0.0026 8.9E-08 53.6 13.1 24 111-134 2-25 (178)
92 1g5t_A COB(I)alamin adenosyltr 97.3 0.00051 1.7E-08 58.4 7.0 115 109-225 28-163 (196)
93 2orw_A Thymidine kinase; TMTK, 97.2 0.00013 4.6E-09 62.0 2.7 109 109-225 3-113 (184)
94 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00071 2.4E-08 62.2 6.0 25 108-132 122-146 (331)
95 3jvv_A Twitching mobility prot 97.0 0.00037 1.2E-08 65.7 3.5 112 108-228 122-234 (356)
96 1ypw_A Transitional endoplasmi 97.0 0.00013 4.5E-09 76.5 0.4 148 87-255 474-661 (806)
97 3hws_A ATP-dependent CLP prote 96.9 0.00078 2.7E-08 63.8 4.8 44 91-134 16-76 (363)
98 1qhx_A CPT, protein (chloramph 96.9 0.00064 2.2E-08 57.1 3.7 26 109-134 3-28 (178)
99 1rz3_A Hypothetical protein rb 96.8 0.0014 4.7E-08 56.4 5.8 41 95-135 3-48 (201)
100 3nbx_X ATPase RAVA; AAA+ ATPas 96.8 0.00053 1.8E-08 67.6 3.5 45 90-134 22-66 (500)
101 2b8t_A Thymidine kinase; deoxy 96.8 0.0018 6.2E-08 56.6 6.2 107 108-225 11-126 (223)
102 1u0j_A DNA replication protein 96.7 0.0034 1.2E-07 56.1 7.6 34 100-133 91-128 (267)
103 3upu_A ATP-dependent DNA helic 96.7 0.0084 2.9E-07 58.6 11.2 52 87-138 18-74 (459)
104 3dzd_A Transcriptional regulat 96.7 0.086 2.9E-06 49.7 17.3 46 89-134 128-177 (368)
105 1vma_A Cell division protein F 96.7 0.0067 2.3E-07 55.7 9.2 28 109-136 104-131 (306)
106 1tue_A Replication protein E1; 96.6 0.0014 4.9E-08 55.9 4.3 39 97-135 43-84 (212)
107 3kb2_A SPBC2 prophage-derived 96.6 0.0012 4.1E-08 55.0 3.7 25 110-134 2-26 (173)
108 3vaa_A Shikimate kinase, SK; s 96.6 0.0014 4.9E-08 56.2 4.1 26 108-133 24-49 (199)
109 1sky_E F1-ATPase, F1-ATP synth 96.6 0.003 1E-07 61.1 6.7 39 108-146 150-188 (473)
110 3trf_A Shikimate kinase, SK; a 96.6 0.0014 4.8E-08 55.4 3.9 25 109-133 5-29 (185)
111 3ice_A Transcription terminati 96.6 0.0012 4E-08 62.1 3.3 30 108-137 173-202 (422)
112 1g8p_A Magnesium-chelatase 38 96.5 0.0011 3.9E-08 62.2 3.3 48 87-134 21-70 (350)
113 1ex7_A Guanylate kinase; subst 96.5 0.001 3.6E-08 56.3 2.7 28 110-137 2-29 (186)
114 3sr0_A Adenylate kinase; phosp 96.5 0.004 1.4E-07 53.7 6.3 23 111-133 2-24 (206)
115 3dm5_A SRP54, signal recogniti 96.5 0.0077 2.6E-07 58.0 8.8 28 109-136 100-127 (443)
116 3c8u_A Fructokinase; YP_612366 96.5 0.0026 9E-08 54.9 5.0 27 108-134 21-47 (208)
117 3hr8_A Protein RECA; alpha and 96.5 0.0035 1.2E-07 58.8 6.1 37 108-144 60-96 (356)
118 1ly1_A Polynucleotide kinase; 96.5 0.0015 5.1E-08 54.8 3.2 22 110-131 3-24 (181)
119 2r2a_A Uncharacterized protein 96.4 0.0041 1.4E-07 53.3 5.9 23 110-132 6-28 (199)
120 1kgd_A CASK, peripheral plasma 96.4 0.0019 6.7E-08 54.4 3.7 26 109-134 5-30 (180)
121 3lw7_A Adenylate kinase relate 96.4 0.0017 5.9E-08 54.0 3.4 22 110-132 2-23 (179)
122 2yvu_A Probable adenylyl-sulfa 96.4 0.0031 1.1E-07 53.4 5.0 29 108-136 12-40 (186)
123 1kag_A SKI, shikimate kinase I 96.4 0.0018 6E-08 54.1 3.3 26 109-134 4-29 (173)
124 3uie_A Adenylyl-sulfate kinase 96.4 0.0032 1.1E-07 54.0 5.0 27 108-134 24-50 (200)
125 3iij_A Coilin-interacting nucl 96.4 0.002 7E-08 54.2 3.6 26 108-133 10-35 (180)
126 1nks_A Adenylate kinase; therm 96.4 0.0028 9.7E-08 53.7 4.5 26 110-135 2-27 (194)
127 3t61_A Gluconokinase; PSI-biol 96.4 0.0019 6.6E-08 55.4 3.5 25 109-133 18-42 (202)
128 1kht_A Adenylate kinase; phosp 96.4 0.0023 7.7E-08 54.3 3.9 27 109-135 3-29 (192)
129 2ck3_D ATP synthase subunit be 96.3 0.0095 3.3E-07 57.5 8.3 55 108-165 152-206 (482)
130 2c95_A Adenylate kinase 1; tra 96.3 0.0031 1.1E-07 53.7 4.6 27 107-133 7-33 (196)
131 1g41_A Heat shock protein HSLU 96.3 0.0036 1.2E-07 60.4 5.4 46 90-135 15-76 (444)
132 2rhm_A Putative kinase; P-loop 96.3 0.0021 7.3E-08 54.5 3.5 25 109-133 5-29 (193)
133 3kl4_A SRP54, signal recogniti 96.3 0.011 3.7E-07 56.9 8.5 28 109-136 97-124 (433)
134 3e1s_A Exodeoxyribonuclease V, 96.3 0.022 7.4E-07 57.2 11.0 40 102-141 197-236 (574)
135 1zuh_A Shikimate kinase; alpha 96.3 0.0028 9.7E-08 52.6 3.9 26 109-134 7-32 (168)
136 4eun_A Thermoresistant glucoki 96.3 0.0029 1E-07 54.3 4.0 26 108-133 28-53 (200)
137 1zp6_A Hypothetical protein AT 96.3 0.0021 7.1E-08 54.6 3.0 25 108-132 8-32 (191)
138 2qor_A Guanylate kinase; phosp 96.2 0.0025 8.7E-08 54.8 3.5 27 108-134 11-37 (204)
139 3tau_A Guanylate kinase, GMP k 96.2 0.0028 9.6E-08 54.8 3.7 27 108-134 7-33 (208)
140 3a00_A Guanylate kinase, GMP k 96.2 0.0026 8.8E-08 53.9 3.4 28 110-137 2-29 (186)
141 1via_A Shikimate kinase; struc 96.2 0.0024 8.1E-08 53.5 3.1 25 110-134 5-29 (175)
142 3k1j_A LON protease, ATP-depen 96.2 0.0041 1.4E-07 63.1 5.3 48 89-136 40-87 (604)
143 2vli_A Antibiotic resistance p 96.2 0.0023 7.8E-08 53.9 2.9 26 109-134 5-30 (183)
144 1tev_A UMP-CMP kinase; ploop, 96.2 0.0028 9.6E-08 53.8 3.5 25 109-133 3-27 (196)
145 2iyv_A Shikimate kinase, SK; t 96.2 0.0028 9.4E-08 53.5 3.4 25 110-134 3-27 (184)
146 2ze6_A Isopentenyl transferase 96.2 0.0026 9E-08 56.9 3.4 25 110-134 2-26 (253)
147 2bwj_A Adenylate kinase 5; pho 96.2 0.0032 1.1E-07 53.7 3.7 27 108-134 11-37 (199)
148 1y63_A LMAJ004144AAA protein; 96.2 0.0035 1.2E-07 53.0 3.9 24 109-132 10-33 (184)
149 1nn5_A Similar to deoxythymidy 96.2 0.005 1.7E-07 53.2 5.0 29 108-136 8-36 (215)
150 2dr3_A UPF0273 protein PH0284; 96.1 0.0069 2.3E-07 53.5 5.9 37 108-144 22-58 (247)
151 3tlx_A Adenylate kinase 2; str 96.1 0.0051 1.8E-07 54.6 5.0 26 108-133 28-53 (243)
152 3tr0_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 53.8 3.7 26 108-133 6-31 (205)
153 1knq_A Gluconate kinase; ALFA/ 96.1 0.0035 1.2E-07 52.4 3.7 25 109-133 8-32 (175)
154 3ney_A 55 kDa erythrocyte memb 96.1 0.0037 1.3E-07 53.4 3.7 27 108-134 18-44 (197)
155 1e6c_A Shikimate kinase; phosp 96.1 0.0032 1.1E-07 52.4 3.3 25 110-134 3-27 (173)
156 2jaq_A Deoxyguanosine kinase; 96.1 0.0038 1.3E-07 53.5 3.8 24 111-134 2-25 (205)
157 2plr_A DTMP kinase, probable t 96.1 0.0036 1.2E-07 54.0 3.6 28 109-136 4-31 (213)
158 3cm0_A Adenylate kinase; ATP-b 96.1 0.0034 1.1E-07 53.0 3.3 25 109-133 4-28 (186)
159 2j41_A Guanylate kinase; GMP, 96.1 0.0039 1.3E-07 53.5 3.8 26 108-133 5-30 (207)
160 2cdn_A Adenylate kinase; phosp 96.0 0.0043 1.5E-07 53.2 4.0 25 109-133 20-44 (201)
161 2wwf_A Thymidilate kinase, put 96.0 0.0043 1.5E-07 53.5 4.0 29 108-136 9-37 (212)
162 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0088 3E-07 52.2 6.0 36 108-143 22-57 (235)
163 1ny5_A Transcriptional regulat 96.0 0.072 2.5E-06 50.7 12.7 44 90-133 137-184 (387)
164 1cke_A CK, MSSA, protein (cyti 96.0 0.0043 1.5E-07 54.2 3.9 25 109-133 5-29 (227)
165 1gvn_B Zeta; postsegregational 96.0 0.0051 1.7E-07 56.1 4.4 25 109-133 33-57 (287)
166 1odf_A YGR205W, hypothetical 3 96.0 0.0069 2.4E-07 55.2 5.2 28 108-135 30-57 (290)
167 1xjc_A MOBB protein homolog; s 96.0 0.0082 2.8E-07 49.8 5.2 34 109-142 4-38 (169)
168 2ga8_A Hypothetical 39.9 kDa p 96.0 0.005 1.7E-07 57.4 4.2 29 109-137 24-52 (359)
169 3umf_A Adenylate kinase; rossm 96.0 0.0044 1.5E-07 53.9 3.6 26 108-133 28-53 (217)
170 2bbw_A Adenylate kinase 4, AK4 95.9 0.0049 1.7E-07 54.7 4.0 26 108-133 26-51 (246)
171 2j9r_A Thymidine kinase; TK1, 95.9 0.02 6.7E-07 49.3 7.5 110 108-225 27-138 (214)
172 1qf9_A UMP/CMP kinase, protein 95.9 0.0042 1.4E-07 52.6 3.3 25 109-133 6-30 (194)
173 1ukz_A Uridylate kinase; trans 95.9 0.0042 1.4E-07 53.3 3.3 25 109-133 15-39 (203)
174 3bh0_A DNAB-like replicative h 95.9 0.011 3.7E-07 54.7 6.3 39 106-144 65-103 (315)
175 1lvg_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 53.4 3.0 26 109-134 4-29 (198)
176 1aky_A Adenylate kinase; ATP:A 95.9 0.0056 1.9E-07 53.3 4.0 25 109-133 4-28 (220)
177 1n0w_A DNA repair protein RAD5 95.9 0.014 4.6E-07 51.4 6.6 26 108-133 23-48 (243)
178 2ewv_A Twitching motility prot 95.9 0.0041 1.4E-07 59.0 3.3 110 108-226 135-245 (372)
179 2pt5_A Shikimate kinase, SK; a 95.9 0.0055 1.9E-07 50.7 3.7 24 111-134 2-25 (168)
180 2zr9_A Protein RECA, recombina 95.9 0.021 7.2E-07 53.5 8.2 37 108-144 60-96 (349)
181 2pbr_A DTMP kinase, thymidylat 95.9 0.0055 1.9E-07 52.0 3.8 25 111-135 2-26 (195)
182 2xxa_A Signal recognition part 95.8 0.033 1.1E-06 53.7 9.5 28 109-136 100-127 (433)
183 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.005 1.7E-07 55.3 3.5 26 109-134 4-29 (260)
184 1zd8_A GTP:AMP phosphotransfer 95.8 0.0049 1.7E-07 54.0 3.4 26 108-133 6-31 (227)
185 2cvh_A DNA repair and recombin 95.8 0.011 3.9E-07 51.0 5.8 24 108-131 19-42 (220)
186 3asz_A Uridine kinase; cytidin 95.8 0.0055 1.9E-07 52.9 3.6 27 108-134 5-31 (211)
187 2bdt_A BH3686; alpha-beta prot 95.8 0.0051 1.8E-07 52.1 3.4 22 110-131 3-24 (189)
188 1fx0_B ATP synthase beta chain 95.8 0.01 3.4E-07 57.6 5.7 55 108-165 164-218 (498)
189 3tqc_A Pantothenate kinase; bi 95.8 0.0081 2.8E-07 55.5 4.8 43 92-134 69-117 (321)
190 2wsm_A Hydrogenase expression/ 95.8 0.012 4.1E-07 51.0 5.7 41 96-136 15-57 (221)
191 1j8m_F SRP54, signal recogniti 95.8 0.024 8.3E-07 51.8 7.9 28 109-136 98-125 (297)
192 3fb4_A Adenylate kinase; psych 95.8 0.0059 2E-07 52.9 3.7 23 111-133 2-24 (216)
193 4gp7_A Metallophosphoesterase; 95.8 0.0043 1.5E-07 51.8 2.7 22 108-129 8-29 (171)
194 2if2_A Dephospho-COA kinase; a 95.8 0.0053 1.8E-07 52.7 3.3 22 110-131 2-23 (204)
195 1zak_A Adenylate kinase; ATP:A 95.8 0.0055 1.9E-07 53.4 3.5 26 109-134 5-30 (222)
196 2zts_A Putative uncharacterize 95.7 0.014 5E-07 51.5 6.3 26 108-133 29-54 (251)
197 2p5t_B PEZT; postsegregational 95.7 0.0065 2.2E-07 54.3 3.8 27 108-134 31-57 (253)
198 2v54_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 52.3 3.4 25 109-133 4-28 (204)
199 4a1f_A DNAB helicase, replicat 95.7 0.03 1E-06 52.0 8.4 54 106-166 43-96 (338)
200 1u94_A RECA protein, recombina 95.7 0.011 3.6E-07 55.7 5.3 37 108-144 62-98 (356)
201 2hf9_A Probable hydrogenase ni 95.7 0.018 6.1E-07 50.1 6.6 38 99-136 26-65 (226)
202 1rj9_A FTSY, signal recognitio 95.7 0.011 3.8E-07 54.2 5.4 28 109-136 102-129 (304)
203 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.019 6.4E-07 53.4 7.0 87 108-204 170-257 (330)
204 2z0h_A DTMP kinase, thymidylat 95.7 0.0067 2.3E-07 51.6 3.7 25 111-135 2-26 (197)
205 2jeo_A Uridine-cytidine kinase 95.7 0.0068 2.3E-07 53.8 3.8 26 108-133 24-49 (245)
206 1uj2_A Uridine-cytidine kinase 95.7 0.0062 2.1E-07 54.3 3.5 27 108-134 21-47 (252)
207 2qt1_A Nicotinamide riboside k 95.7 0.0052 1.8E-07 52.9 2.9 26 108-133 20-45 (207)
208 4e22_A Cytidylate kinase; P-lo 95.7 0.0072 2.5E-07 53.9 3.9 27 108-134 26-52 (252)
209 3fwy_A Light-independent proto 95.7 0.01 3.5E-07 54.7 5.0 34 108-141 47-80 (314)
210 3dl0_A Adenylate kinase; phosp 95.6 0.0062 2.1E-07 52.8 3.3 23 111-133 2-24 (216)
211 1gtv_A TMK, thymidylate kinase 95.6 0.0042 1.4E-07 53.7 2.2 26 110-135 1-26 (214)
212 1uf9_A TT1252 protein; P-loop, 95.6 0.0061 2.1E-07 52.1 3.2 25 108-132 7-31 (203)
213 2ehv_A Hypothetical protein PH 95.6 0.01 3.6E-07 52.4 4.9 25 108-132 29-53 (251)
214 1z6g_A Guanylate kinase; struc 95.6 0.0064 2.2E-07 53.0 3.3 26 108-133 22-47 (218)
215 2q6t_A DNAB replication FORK h 95.6 0.045 1.5E-06 53.1 9.7 54 107-167 198-252 (444)
216 1znw_A Guanylate kinase, GMP k 95.6 0.0072 2.4E-07 52.1 3.6 26 108-133 19-44 (207)
217 4a74_A DNA repair and recombin 95.6 0.017 5.7E-07 50.4 6.0 27 108-134 24-50 (231)
218 4b3f_X DNA-binding protein smu 95.6 0.077 2.6E-06 54.2 11.8 40 97-136 193-232 (646)
219 1jjv_A Dephospho-COA kinase; P 95.6 0.0062 2.1E-07 52.4 3.1 22 110-131 3-24 (206)
220 2eyu_A Twitching motility prot 95.6 0.011 3.9E-07 52.9 4.9 112 106-226 22-134 (261)
221 1cr0_A DNA primase/helicase; R 95.6 0.014 5E-07 53.2 5.6 38 99-136 25-62 (296)
222 1s96_A Guanylate kinase, GMP k 95.5 0.0084 2.9E-07 52.2 3.7 27 108-134 15-41 (219)
223 2grj_A Dephospho-COA kinase; T 95.5 0.008 2.7E-07 51.2 3.5 25 109-133 12-36 (192)
224 2px0_A Flagellar biosynthesis 95.5 0.013 4.4E-07 53.6 5.1 28 108-135 104-131 (296)
225 1htw_A HI0065; nucleotide-bind 95.5 0.011 3.8E-07 48.5 4.2 26 108-133 32-57 (158)
226 1m7g_A Adenylylsulfate kinase; 95.5 0.0084 2.9E-07 51.8 3.6 27 108-134 24-50 (211)
227 3nwj_A ATSK2; P loop, shikimat 95.5 0.0078 2.7E-07 53.6 3.4 26 109-134 48-73 (250)
228 2pez_A Bifunctional 3'-phospho 95.5 0.0089 3.1E-07 50.1 3.6 26 109-134 5-30 (179)
229 3exa_A TRNA delta(2)-isopenten 95.5 0.0074 2.5E-07 55.2 3.2 25 109-133 3-27 (322)
230 3ake_A Cytidylate kinase; CMP 95.4 0.01 3.5E-07 50.9 3.9 25 110-134 3-27 (208)
231 3r20_A Cytidylate kinase; stru 95.4 0.0095 3.3E-07 52.3 3.7 27 108-134 8-34 (233)
232 2j37_W Signal recognition part 95.4 0.043 1.5E-06 53.9 8.7 28 109-136 101-128 (504)
233 2z43_A DNA repair and recombin 95.4 0.022 7.7E-07 52.8 6.5 28 108-135 106-133 (324)
234 3a8t_A Adenylate isopentenyltr 95.4 0.0067 2.3E-07 56.2 2.7 26 108-133 39-64 (339)
235 2r8r_A Sensor protein; KDPD, P 95.4 0.015 5.1E-07 50.6 4.7 26 111-136 8-33 (228)
236 1ak2_A Adenylate kinase isoenz 95.4 0.011 3.7E-07 52.0 4.0 26 109-134 16-41 (233)
237 3b9q_A Chloroplast SRP recepto 95.4 0.014 4.7E-07 53.6 4.7 29 108-136 99-127 (302)
238 1nlf_A Regulatory protein REPA 95.4 0.018 6.1E-07 52.1 5.4 28 108-135 29-56 (279)
239 3lnc_A Guanylate kinase, GMP k 95.3 0.0073 2.5E-07 53.0 2.7 26 108-133 26-52 (231)
240 3crm_A TRNA delta(2)-isopenten 95.3 0.0085 2.9E-07 55.2 3.2 24 110-133 6-29 (323)
241 3aez_A Pantothenate kinase; tr 95.3 0.0089 3.1E-07 55.1 3.4 27 108-134 89-115 (312)
242 3foz_A TRNA delta(2)-isopenten 95.3 0.0087 3E-07 54.6 3.2 25 109-133 10-34 (316)
243 2xb4_A Adenylate kinase; ATP-b 95.3 0.01 3.6E-07 51.8 3.6 23 111-133 2-24 (223)
244 3be4_A Adenylate kinase; malar 95.3 0.01 3.4E-07 51.6 3.5 24 110-133 6-29 (217)
245 1np6_A Molybdopterin-guanine d 95.3 0.021 7.3E-07 47.6 5.3 27 109-135 6-32 (174)
246 3d3q_A TRNA delta(2)-isopenten 95.3 0.0097 3.3E-07 55.2 3.5 25 110-134 8-32 (340)
247 2qmh_A HPR kinase/phosphorylas 95.3 0.0082 2.8E-07 51.0 2.7 26 108-133 33-58 (205)
248 1e4v_A Adenylate kinase; trans 95.3 0.01 3.6E-07 51.3 3.5 23 111-133 2-24 (214)
249 2r6a_A DNAB helicase, replicat 95.2 0.041 1.4E-06 53.6 8.0 39 106-144 200-239 (454)
250 2yhs_A FTSY, cell division pro 95.2 0.023 7.8E-07 55.4 6.0 35 108-143 292-326 (503)
251 3io5_A Recombination and repai 95.2 0.015 5.2E-07 53.2 4.4 34 111-144 30-65 (333)
252 2fz4_A DNA repair protein RAD2 95.2 0.16 5.6E-06 44.5 11.2 40 93-133 93-132 (237)
253 1a7j_A Phosphoribulokinase; tr 95.2 0.0084 2.9E-07 54.7 2.7 26 109-134 5-30 (290)
254 3e70_C DPA, signal recognition 95.2 0.016 5.6E-07 53.7 4.7 29 108-136 128-156 (328)
255 2i3b_A HCR-ntpase, human cance 95.2 0.012 4.1E-07 49.9 3.5 25 110-134 2-26 (189)
256 4akg_A Glutathione S-transfera 95.2 0.072 2.5E-06 62.4 10.8 154 102-276 1260-1452(2695)
257 1xp8_A RECA protein, recombina 95.2 0.019 6.5E-07 54.1 5.2 37 108-144 73-109 (366)
258 3bgw_A DNAB-like replicative h 95.2 0.022 7.6E-07 55.2 5.7 37 107-143 195-231 (444)
259 1vht_A Dephospho-COA kinase; s 95.2 0.011 3.9E-07 51.2 3.4 23 109-131 4-26 (218)
260 1zu4_A FTSY; GTPase, signal re 95.1 0.019 6.5E-07 53.1 4.9 29 108-136 104-132 (320)
261 3p32_A Probable GTPase RV1496/ 95.1 0.035 1.2E-06 52.1 6.8 29 108-136 78-106 (355)
262 2f1r_A Molybdopterin-guanine d 95.1 0.01 3.4E-07 49.5 2.6 26 110-135 3-28 (171)
263 2og2_A Putative signal recogni 95.0 0.019 6.6E-07 53.8 4.7 29 108-136 156-184 (359)
264 1v5w_A DMC1, meiotic recombina 94.9 0.035 1.2E-06 51.9 6.2 27 108-134 121-147 (343)
265 3end_A Light-independent proto 94.9 0.023 7.9E-07 52.1 5.0 39 108-147 40-78 (307)
266 1sq5_A Pantothenate kinase; P- 94.9 0.021 7.3E-07 52.5 4.6 27 108-134 79-105 (308)
267 2f6r_A COA synthase, bifunctio 94.9 0.013 4.3E-07 53.3 3.0 23 109-131 75-97 (281)
268 3f9v_A Minichromosome maintena 94.9 0.0078 2.7E-07 60.8 1.7 44 90-133 295-351 (595)
269 1ltq_A Polynucleotide kinase; 94.9 0.014 4.7E-07 53.5 3.2 23 110-132 3-25 (301)
270 1yrb_A ATP(GTP)binding protein 94.9 0.027 9.3E-07 50.2 5.1 27 108-134 13-39 (262)
271 3tif_A Uncharacterized ABC tra 94.9 0.014 4.7E-07 51.5 3.1 24 108-131 30-53 (235)
272 1svm_A Large T antigen; AAA+ f 94.8 0.026 9E-07 53.3 5.1 26 108-133 168-193 (377)
273 3vr4_D V-type sodium ATPase su 94.8 0.043 1.5E-06 52.7 6.6 28 108-135 150-177 (465)
274 3eph_A TRNA isopentenyltransfe 94.8 0.016 5.3E-07 55.0 3.5 26 109-134 2-27 (409)
275 2v9p_A Replication protein E1; 94.8 0.025 8.6E-07 51.8 4.7 26 108-133 125-150 (305)
276 3b85_A Phosphate starvation-in 94.8 0.015 5.2E-07 50.1 3.1 26 107-132 20-45 (208)
277 2v3c_C SRP54, signal recogniti 94.8 0.016 5.3E-07 56.0 3.4 28 109-136 99-126 (432)
278 2pcj_A ABC transporter, lipopr 94.8 0.014 4.8E-07 51.0 2.9 25 108-132 29-53 (224)
279 3zvl_A Bifunctional polynucleo 94.7 0.015 5E-07 56.1 3.1 26 108-133 257-282 (416)
280 4eaq_A DTMP kinase, thymidylat 94.7 0.02 6.9E-07 50.2 3.7 28 108-135 25-52 (229)
281 2cbz_A Multidrug resistance-as 94.7 0.016 5.5E-07 51.1 3.1 26 108-133 30-55 (237)
282 1ls1_A Signal recognition part 94.7 0.03 1E-06 51.2 4.9 28 109-136 98-125 (295)
283 1q57_A DNA primase/helicase; d 94.7 0.063 2.2E-06 53.0 7.6 52 108-166 241-293 (503)
284 1pzn_A RAD51, DNA repair and r 94.7 0.022 7.6E-07 53.4 4.1 27 108-134 130-156 (349)
285 2onk_A Molybdate/tungstate ABC 94.7 0.019 6.5E-07 50.7 3.4 24 108-132 24-47 (240)
286 2c61_A A-type ATP synthase non 94.6 0.045 1.5E-06 52.8 6.1 86 108-196 151-258 (469)
287 1q3t_A Cytidylate kinase; nucl 94.6 0.024 8.3E-07 49.8 4.0 26 108-133 15-40 (236)
288 3lda_A DNA repair protein RAD5 94.6 0.052 1.8E-06 51.8 6.5 26 108-133 177-202 (400)
289 2ged_A SR-beta, signal recogni 94.6 0.038 1.3E-06 46.5 5.1 25 108-132 47-71 (193)
290 2d2e_A SUFC protein; ABC-ATPas 94.6 0.022 7.4E-07 50.7 3.6 25 108-132 28-52 (250)
291 3gfo_A Cobalt import ATP-bindi 94.5 0.018 6.3E-07 51.9 3.1 24 108-131 33-56 (275)
292 1b0u_A Histidine permease; ABC 94.5 0.018 6.2E-07 51.6 3.0 25 108-132 31-55 (262)
293 1cp2_A CP2, nitrogenase iron p 94.5 0.033 1.1E-06 49.9 4.7 36 110-146 2-37 (269)
294 1sgw_A Putative ABC transporte 94.5 0.017 5.7E-07 50.1 2.6 25 108-132 34-58 (214)
295 4g1u_C Hemin import ATP-bindin 94.5 0.019 6.5E-07 51.6 3.0 25 108-132 36-60 (266)
296 1ji0_A ABC transporter; ATP bi 94.5 0.019 6.6E-07 50.7 3.1 24 108-131 31-54 (240)
297 2pze_A Cystic fibrosis transme 94.5 0.02 6.7E-07 50.3 3.0 26 108-133 33-58 (229)
298 1g6h_A High-affinity branched- 94.4 0.02 6.8E-07 51.2 3.1 25 108-132 32-56 (257)
299 2zu0_C Probable ATP-dependent 94.4 0.024 8.1E-07 51.0 3.6 25 108-132 45-69 (267)
300 3gqb_B V-type ATP synthase bet 94.4 0.057 2E-06 51.8 6.3 27 108-134 146-172 (464)
301 2ff7_A Alpha-hemolysin translo 94.4 0.02 6.9E-07 50.8 3.1 25 108-132 34-58 (247)
302 2p67_A LAO/AO transport system 94.4 0.046 1.6E-06 51.1 5.6 28 108-135 55-82 (341)
303 2ocp_A DGK, deoxyguanosine kin 94.4 0.021 7.1E-07 50.4 3.1 26 109-134 2-27 (241)
304 1oix_A RAS-related protein RAB 94.4 0.022 7.6E-07 48.1 3.2 23 110-132 30-52 (191)
305 2olj_A Amino acid ABC transpor 94.4 0.021 7E-07 51.2 3.0 25 108-132 49-73 (263)
306 2afh_E Nitrogenase iron protei 94.4 0.037 1.3E-06 50.3 4.8 38 109-147 2-39 (289)
307 1p9r_A General secretion pathw 94.3 0.06 2.1E-06 51.6 6.3 36 101-136 158-194 (418)
308 2qm8_A GTPase/ATPase; G protei 94.3 0.047 1.6E-06 50.9 5.5 28 108-135 54-81 (337)
309 2ghi_A Transport protein; mult 94.3 0.022 7.4E-07 51.0 3.1 25 108-132 45-69 (260)
310 2f9l_A RAB11B, member RAS onco 94.3 0.024 8.1E-07 48.3 3.1 22 111-132 7-28 (199)
311 4edh_A DTMP kinase, thymidylat 94.3 0.046 1.6E-06 47.2 5.0 28 109-136 6-33 (213)
312 1vpl_A ABC transporter, ATP-bi 94.3 0.023 7.7E-07 50.8 3.0 25 108-132 40-64 (256)
313 1mv5_A LMRA, multidrug resista 94.2 0.02 7E-07 50.6 2.7 24 108-131 27-50 (243)
314 2ixe_A Antigen peptide transpo 94.2 0.023 7.9E-07 51.2 3.1 25 108-132 44-68 (271)
315 2i1q_A DNA repair and recombin 94.2 0.054 1.8E-06 50.1 5.7 26 108-133 97-122 (322)
316 2qi9_C Vitamin B12 import ATP- 94.2 0.024 8.1E-07 50.4 3.0 26 108-133 25-50 (249)
317 2wji_A Ferrous iron transport 94.2 0.028 9.6E-07 46.1 3.2 22 110-131 4-25 (165)
318 2nq2_C Hypothetical ABC transp 94.2 0.025 8.5E-07 50.4 3.0 25 108-132 30-54 (253)
319 3tqf_A HPR(Ser) kinase; transf 94.1 0.028 9.5E-07 46.5 3.0 25 108-132 15-39 (181)
320 2zej_A Dardarin, leucine-rich 94.1 0.021 7.2E-07 47.9 2.5 21 111-131 4-24 (184)
321 2yz2_A Putative ABC transporte 94.1 0.025 8.6E-07 50.8 3.1 25 108-132 32-56 (266)
322 2ihy_A ABC transporter, ATP-bi 94.1 0.026 8.8E-07 51.1 3.0 25 108-132 46-70 (279)
323 2dyk_A GTP-binding protein; GT 94.1 0.029 9.8E-07 45.5 3.1 23 110-132 2-24 (161)
324 3fdi_A Uncharacterized protein 94.1 0.034 1.1E-06 47.6 3.6 26 109-134 6-31 (201)
325 3hjn_A DTMP kinase, thymidylat 94.1 0.13 4.6E-06 43.7 7.4 33 111-143 2-34 (197)
326 2axn_A 6-phosphofructo-2-kinas 94.1 0.045 1.5E-06 54.2 4.9 30 108-137 34-63 (520)
327 2iut_A DNA translocase FTSK; n 94.0 0.55 1.9E-05 46.6 12.6 39 109-147 214-255 (574)
328 2orv_A Thymidine kinase; TP4A 94.0 0.065 2.2E-06 46.6 5.3 107 109-224 19-125 (234)
329 4hlc_A DTMP kinase, thymidylat 94.0 0.052 1.8E-06 46.6 4.7 29 110-138 3-31 (205)
330 2h92_A Cytidylate kinase; ross 94.0 0.03 1E-06 48.4 3.3 25 109-133 3-27 (219)
331 2ffh_A Protein (FFH); SRP54, s 94.0 0.053 1.8E-06 52.0 5.1 28 109-136 98-125 (425)
332 2ck3_A ATP synthase subunit al 94.0 0.077 2.6E-06 51.7 6.2 27 108-134 161-188 (510)
333 3io3_A DEHA2D07832P; chaperone 93.9 0.067 2.3E-06 50.0 5.6 36 108-143 17-54 (348)
334 3kta_A Chromosome segregation 93.9 0.036 1.2E-06 46.4 3.4 26 108-133 25-50 (182)
335 1z2a_A RAS-related protein RAB 93.9 0.033 1.1E-06 45.5 3.1 22 111-132 7-28 (168)
336 2ce2_X GTPase HRAS; signaling 93.9 0.031 1.1E-06 45.4 3.0 22 111-132 5-26 (166)
337 3e2i_A Thymidine kinase; Zn-bi 93.9 0.057 2E-06 46.4 4.6 104 108-222 27-135 (219)
338 3nh6_A ATP-binding cassette SU 93.8 0.026 8.9E-07 51.7 2.6 24 108-131 79-102 (306)
339 3lv8_A DTMP kinase, thymidylat 93.8 0.064 2.2E-06 47.1 5.0 29 108-136 26-54 (236)
340 3kjh_A CO dehydrogenase/acetyl 93.8 0.052 1.8E-06 47.8 4.5 34 112-146 3-36 (254)
341 2oze_A ORF delta'; para, walke 93.8 0.063 2.2E-06 48.9 5.1 38 99-136 23-64 (298)
342 3sop_A Neuronal-specific septi 93.8 0.034 1.2E-06 50.1 3.2 23 111-133 4-26 (270)
343 3gmt_A Adenylate kinase; ssgci 93.8 0.039 1.3E-06 48.2 3.4 24 110-133 9-32 (230)
344 2qe7_A ATP synthase subunit al 93.7 0.15 5.1E-06 49.5 7.7 26 108-133 161-187 (502)
345 2wjg_A FEOB, ferrous iron tran 93.7 0.032 1.1E-06 46.7 2.8 23 110-132 8-30 (188)
346 3fvq_A Fe(3+) IONS import ATP- 93.7 0.037 1.3E-06 51.8 3.4 24 108-131 29-52 (359)
347 4gzl_A RAS-related C3 botulinu 93.7 0.035 1.2E-06 47.4 3.1 25 108-132 29-53 (204)
348 3v9p_A DTMP kinase, thymidylat 93.6 0.043 1.5E-06 47.9 3.5 29 108-136 24-52 (227)
349 2gza_A Type IV secretion syste 93.6 0.042 1.4E-06 51.7 3.7 36 108-144 174-209 (361)
350 2nzj_A GTP-binding protein REM 93.6 0.037 1.3E-06 45.6 3.0 22 111-132 6-27 (175)
351 1kao_A RAP2A; GTP-binding prot 93.6 0.04 1.4E-06 44.8 3.1 22 111-132 5-26 (167)
352 1u8z_A RAS-related protein RAL 93.6 0.04 1.4E-06 44.8 3.1 22 111-132 6-27 (168)
353 2gk6_A Regulator of nonsense t 93.6 0.43 1.5E-05 48.4 11.3 46 98-144 185-230 (624)
354 3con_A GTPase NRAS; structural 93.6 0.039 1.4E-06 46.3 3.1 22 111-132 23-44 (190)
355 1g8f_A Sulfate adenylyltransfe 93.6 0.074 2.5E-06 52.2 5.4 44 92-135 374-421 (511)
356 1z47_A CYSA, putative ABC-tran 93.5 0.043 1.5E-06 51.3 3.6 24 108-131 40-63 (355)
357 1z08_A RAS-related protein RAB 93.5 0.042 1.4E-06 45.0 3.1 22 111-132 8-29 (170)
358 2pjz_A Hypothetical protein ST 93.5 0.037 1.3E-06 49.6 3.0 25 109-133 30-54 (263)
359 2bbs_A Cystic fibrosis transme 93.5 0.036 1.2E-06 50.4 2.9 58 180-239 170-231 (290)
360 1c1y_A RAS-related protein RAP 93.5 0.043 1.5E-06 44.7 3.1 22 111-132 5-26 (167)
361 1r8s_A ADP-ribosylation factor 93.5 0.045 1.6E-06 44.5 3.3 22 111-132 2-23 (164)
362 2lkc_A Translation initiation 93.5 0.047 1.6E-06 45.1 3.4 24 108-131 7-30 (178)
363 1nrj_B SR-beta, signal recogni 93.5 0.051 1.8E-06 46.8 3.8 25 108-132 11-35 (218)
364 2vp4_A Deoxynucleoside kinase; 93.5 0.026 8.8E-07 49.5 1.8 25 108-132 19-43 (230)
365 2yyz_A Sugar ABC transporter, 93.4 0.046 1.6E-06 51.3 3.6 24 108-131 28-51 (359)
366 3rlf_A Maltose/maltodextrin im 93.4 0.046 1.6E-06 51.6 3.6 24 108-131 28-51 (381)
367 1ek0_A Protein (GTP-binding pr 93.4 0.044 1.5E-06 44.7 3.1 22 111-132 5-26 (170)
368 1z0j_A RAB-22, RAS-related pro 93.4 0.044 1.5E-06 44.8 3.1 22 111-132 8-29 (170)
369 1p5z_B DCK, deoxycytidine kina 93.4 0.02 6.9E-07 51.3 1.1 27 108-134 23-49 (263)
370 2www_A Methylmalonic aciduria 93.4 0.071 2.4E-06 49.9 4.9 27 109-135 74-100 (349)
371 1bif_A 6-phosphofructo-2-kinas 93.4 0.069 2.3E-06 52.2 4.9 30 108-137 38-67 (469)
372 2it1_A 362AA long hypothetical 93.4 0.047 1.6E-06 51.3 3.6 24 108-131 28-51 (362)
373 3iqw_A Tail-anchored protein t 93.4 0.094 3.2E-06 48.7 5.6 36 108-143 15-50 (334)
374 3ld9_A DTMP kinase, thymidylat 93.4 0.054 1.9E-06 47.1 3.7 28 108-135 20-47 (223)
375 3cr8_A Sulfate adenylyltranfer 93.4 0.071 2.4E-06 53.0 5.0 28 108-135 368-395 (552)
376 3q85_A GTP-binding protein REM 93.4 0.043 1.5E-06 44.9 3.0 21 111-131 4-24 (169)
377 2erx_A GTP-binding protein DI- 93.4 0.04 1.4E-06 45.1 2.8 21 111-131 5-25 (172)
378 2gj8_A MNME, tRNA modification 93.4 0.038 1.3E-06 45.8 2.6 23 110-132 5-27 (172)
379 1m7b_A RND3/RHOE small GTP-bin 93.4 0.043 1.5E-06 45.9 3.0 22 111-132 9-30 (184)
380 4tmk_A Protein (thymidylate ki 93.3 0.088 3E-06 45.5 5.0 28 109-136 3-30 (213)
381 4dzz_A Plasmid partitioning pr 93.3 0.07 2.4E-06 45.4 4.4 36 110-146 2-38 (206)
382 3d31_A Sulfate/molybdate ABC t 93.3 0.042 1.4E-06 51.3 3.1 25 108-132 25-49 (348)
383 1ky3_A GTP-binding protein YPT 93.3 0.046 1.6E-06 45.2 3.1 23 110-132 9-31 (182)
384 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.046 1.6E-06 45.1 3.1 22 111-132 9-30 (177)
385 3ihw_A Centg3; RAS, centaurin, 93.3 0.046 1.6E-06 45.8 3.1 22 111-132 22-43 (184)
386 1g29_1 MALK, maltose transport 93.3 0.049 1.7E-06 51.4 3.6 25 108-132 28-52 (372)
387 1g16_A RAS-related protein SEC 93.3 0.045 1.5E-06 44.7 3.0 22 111-132 5-26 (170)
388 3tui_C Methionine import ATP-b 93.3 0.05 1.7E-06 51.0 3.6 24 108-131 53-76 (366)
389 1v43_A Sugar-binding transport 93.3 0.051 1.7E-06 51.2 3.6 24 108-131 36-59 (372)
390 1r2q_A RAS-related protein RAB 93.2 0.049 1.7E-06 44.4 3.1 22 111-132 8-29 (170)
391 2yv5_A YJEQ protein; hydrolase 93.2 0.078 2.7E-06 48.5 4.8 31 99-130 156-186 (302)
392 2r9v_A ATP synthase subunit al 93.2 0.17 5.9E-06 49.1 7.2 85 108-197 174-277 (515)
393 3l0o_A Transcription terminati 93.2 0.11 3.6E-06 48.9 5.5 36 102-137 165-203 (427)
394 1svi_A GTP-binding protein YSX 93.2 0.051 1.7E-06 45.7 3.2 25 108-132 22-46 (195)
395 3q72_A GTP-binding protein RAD 93.2 0.043 1.5E-06 44.7 2.6 21 111-131 4-24 (166)
396 1tq4_A IIGP1, interferon-induc 93.2 0.065 2.2E-06 51.2 4.2 24 108-131 68-91 (413)
397 2hxs_A RAB-26, RAS-related pro 93.1 0.049 1.7E-06 45.0 3.0 22 111-132 8-29 (178)
398 3c5c_A RAS-like protein 12; GD 93.1 0.051 1.8E-06 45.6 3.1 22 111-132 23-44 (187)
399 3tmk_A Thymidylate kinase; pho 93.1 0.066 2.3E-06 46.3 3.8 28 108-135 4-31 (216)
400 2iwr_A Centaurin gamma 1; ANK 93.1 0.043 1.5E-06 45.5 2.6 22 111-132 9-30 (178)
401 2fn4_A P23, RAS-related protei 93.1 0.049 1.7E-06 45.0 2.9 23 110-132 10-32 (181)
402 1z0f_A RAB14, member RAS oncog 93.1 0.053 1.8E-06 44.7 3.1 23 110-132 16-38 (179)
403 1oxx_K GLCV, glucose, ABC tran 93.1 0.04 1.4E-06 51.6 2.5 24 108-131 30-53 (353)
404 1upt_A ARL1, ADP-ribosylation 93.1 0.054 1.8E-06 44.3 3.1 24 109-132 7-30 (171)
405 2obl_A ESCN; ATPase, hydrolase 93.1 0.11 3.7E-06 48.6 5.5 34 101-134 61-96 (347)
406 1m2o_B GTP-binding protein SAR 93.1 0.05 1.7E-06 45.8 3.0 25 108-132 22-46 (190)
407 2cjw_A GTP-binding protein GEM 93.1 0.053 1.8E-06 45.8 3.1 21 111-131 8-28 (192)
408 3bc1_A RAS-related protein RAB 93.0 0.056 1.9E-06 45.3 3.1 22 111-132 13-34 (195)
409 3oaa_A ATP synthase subunit al 93.0 0.22 7.6E-06 48.3 7.6 25 108-132 161-186 (513)
410 3geh_A MNME, tRNA modification 92.9 0.31 1E-05 47.4 8.7 22 111-132 226-247 (462)
411 3kkq_A RAS-related protein M-R 92.9 0.057 2E-06 44.9 3.1 23 110-132 19-41 (183)
412 2oil_A CATX-8, RAS-related pro 92.9 0.057 1.9E-06 45.4 3.1 23 110-132 26-48 (193)
413 1lw7_A Transcriptional regulat 92.9 0.052 1.8E-06 51.2 3.1 26 109-134 170-195 (365)
414 4dsu_A GTPase KRAS, isoform 2B 92.9 0.058 2E-06 45.0 3.1 22 111-132 6-27 (189)
415 1tf7_A KAIC; homohexamer, hexa 92.9 0.14 4.9E-06 50.7 6.4 29 108-136 280-308 (525)
416 3zq6_A Putative arsenical pump 92.9 0.085 2.9E-06 48.8 4.5 35 109-143 14-48 (324)
417 2y8e_A RAB-protein 6, GH09086P 92.9 0.056 1.9E-06 44.6 3.0 22 111-132 16-37 (179)
418 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.06 2E-06 44.8 3.1 22 111-132 7-28 (186)
419 2bme_A RAB4A, RAS-related prot 92.8 0.056 1.9E-06 45.0 3.0 23 110-132 11-33 (186)
420 3gd7_A Fusion complex of cysti 92.8 0.06 2E-06 51.1 3.4 24 108-131 46-69 (390)
421 3bfv_A CAPA1, CAPB2, membrane 92.8 0.18 6.1E-06 45.3 6.4 47 97-143 64-117 (271)
422 3pqc_A Probable GTP-binding pr 92.8 0.061 2.1E-06 45.1 3.2 24 109-132 23-46 (195)
423 2efe_B Small GTP-binding prote 92.8 0.061 2.1E-06 44.5 3.1 22 111-132 14-35 (181)
424 2cxx_A Probable GTP-binding pr 92.8 0.053 1.8E-06 45.3 2.7 22 111-132 3-24 (190)
425 2a9k_A RAS-related protein RAL 92.8 0.062 2.1E-06 44.6 3.1 23 110-132 19-41 (187)
426 3bwd_D RAC-like GTP-binding pr 92.8 0.063 2.2E-06 44.5 3.1 23 110-132 9-31 (182)
427 2g6b_A RAS-related protein RAB 92.7 0.064 2.2E-06 44.4 3.1 22 111-132 12-33 (180)
428 1x6v_B Bifunctional 3'-phospho 92.7 0.066 2.3E-06 53.9 3.7 27 108-134 51-77 (630)
429 2atv_A RERG, RAS-like estrogen 92.7 0.064 2.2E-06 45.3 3.1 24 109-132 28-51 (196)
430 3t1o_A Gliding protein MGLA; G 92.7 0.058 2E-06 45.3 2.8 23 111-133 16-38 (198)
431 2oap_1 GSPE-2, type II secreti 92.7 0.07 2.4E-06 52.6 3.7 27 108-134 259-285 (511)
432 3thx_A DNA mismatch repair pro 92.6 0.23 7.7E-06 52.6 7.7 23 108-130 661-683 (934)
433 3cbq_A GTP-binding protein REM 92.6 0.049 1.7E-06 46.2 2.3 21 110-130 24-44 (195)
434 1c9k_A COBU, adenosylcobinamid 92.6 0.056 1.9E-06 45.2 2.6 21 112-132 2-22 (180)
435 3t5g_A GTP-binding protein RHE 92.6 0.063 2.2E-06 44.5 3.0 22 110-131 7-28 (181)
436 2bov_A RAla, RAS-related prote 92.6 0.066 2.3E-06 45.4 3.1 23 110-132 15-37 (206)
437 3dz8_A RAS-related protein RAB 92.6 0.067 2.3E-06 45.0 3.1 22 111-132 25-46 (191)
438 3tw8_B RAS-related protein RAB 92.6 0.06 2.1E-06 44.5 2.8 22 110-131 10-31 (181)
439 3clv_A RAB5 protein, putative; 92.6 0.066 2.3E-06 45.2 3.1 22 111-132 9-30 (208)
440 1zd9_A ADP-ribosylation factor 92.6 0.068 2.3E-06 44.8 3.1 23 110-132 23-45 (188)
441 2ew1_A RAS-related protein RAB 92.6 0.063 2.2E-06 45.8 3.0 23 110-132 27-49 (201)
442 1fzq_A ADP-ribosylation factor 92.6 0.057 2E-06 45.0 2.6 24 109-132 16-39 (181)
443 1zj6_A ADP-ribosylation factor 92.6 0.11 3.8E-06 43.3 4.5 30 102-131 8-38 (187)
444 3cio_A ETK, tyrosine-protein k 92.6 0.18 6.2E-06 45.9 6.2 36 108-143 103-139 (299)
445 1gwn_A RHO-related GTP-binding 92.6 0.064 2.2E-06 45.9 3.0 23 110-132 29-51 (205)
446 3hdt_A Putative kinase; struct 92.6 0.072 2.5E-06 46.4 3.3 26 109-134 14-39 (223)
447 1vg8_A RAS-related protein RAB 92.5 0.068 2.3E-06 45.4 3.1 23 110-132 9-31 (207)
448 2gf9_A RAS-related protein RAB 92.5 0.07 2.4E-06 44.7 3.1 23 110-132 23-45 (189)
449 3gee_A MNME, tRNA modification 92.5 0.16 5.5E-06 49.6 6.1 22 111-132 235-256 (476)
450 1xx6_A Thymidine kinase; NESG, 92.5 0.13 4.5E-06 43.5 4.8 106 109-225 8-118 (191)
451 2a5j_A RAS-related protein RAB 92.5 0.072 2.5E-06 44.8 3.1 22 111-132 23-44 (191)
452 2fg5_A RAB-22B, RAS-related pr 92.5 0.067 2.3E-06 45.0 2.9 22 111-132 25-46 (192)
453 3reg_A RHO-like small GTPase; 92.5 0.072 2.5E-06 44.8 3.1 23 110-132 24-46 (194)
454 2fh5_B SR-beta, signal recogni 92.4 0.072 2.5E-06 45.7 3.1 24 109-132 7-30 (214)
455 2g3y_A GTP-binding protein GEM 92.4 0.068 2.3E-06 46.1 3.0 21 111-131 39-59 (211)
456 3ug7_A Arsenical pump-driving 92.4 0.12 4.3E-06 48.2 5.0 29 108-136 25-53 (349)
457 2qag_B Septin-6, protein NEDD5 92.4 0.09 3.1E-06 50.3 4.0 34 99-132 30-65 (427)
458 2rcn_A Probable GTPase ENGC; Y 92.4 0.08 2.7E-06 49.5 3.6 34 99-133 206-239 (358)
459 3oes_A GTPase rhebl1; small GT 92.4 0.069 2.4E-06 45.3 3.0 24 109-132 24-47 (201)
460 3cmu_A Protein RECA, recombina 92.4 0.11 3.9E-06 58.8 5.3 37 108-144 1426-1462(2050)
461 1zbd_A Rabphilin-3A; G protein 92.3 0.067 2.3E-06 45.4 2.8 22 111-132 10-31 (203)
462 1f6b_A SAR1; gtpases, N-termin 92.3 0.057 1.9E-06 45.9 2.3 24 108-131 24-47 (198)
463 1z06_A RAS-related protein RAB 92.3 0.076 2.6E-06 44.5 3.1 23 110-132 21-43 (189)
464 2p5s_A RAS and EF-hand domain 92.3 0.076 2.6E-06 45.0 3.1 24 109-132 28-51 (199)
465 3tkl_A RAS-related protein RAB 92.3 0.077 2.6E-06 44.6 3.1 23 110-132 17-39 (196)
466 1f2t_A RAD50 ABC-ATPase; DNA d 92.3 0.084 2.9E-06 42.7 3.2 26 108-133 22-47 (149)
467 4dkx_A RAS-related protein RAB 92.3 0.076 2.6E-06 46.0 3.1 21 111-131 15-35 (216)
468 2gks_A Bifunctional SAT/APS ki 92.3 0.22 7.6E-06 49.5 6.8 40 96-135 355-398 (546)
469 1x3s_A RAS-related protein RAB 92.3 0.079 2.7E-06 44.4 3.1 23 110-132 16-38 (195)
470 1tf7_A KAIC; homohexamer, hexa 92.3 0.11 3.9E-06 51.5 4.7 46 99-144 28-75 (525)
471 2gf0_A GTP-binding protein DI- 92.2 0.074 2.5E-06 44.8 2.9 22 110-131 9-30 (199)
472 2woo_A ATPase GET3; tail-ancho 92.2 0.17 5.9E-06 46.8 5.6 36 108-143 18-53 (329)
473 3ea0_A ATPase, para family; al 92.2 0.16 5.4E-06 44.6 5.1 39 109-147 4-43 (245)
474 1m8p_A Sulfate adenylyltransfe 92.2 0.084 2.9E-06 52.8 3.7 27 109-135 396-422 (573)
475 1pui_A ENGB, probable GTP-bind 92.2 0.042 1.4E-06 47.0 1.3 24 108-131 25-48 (210)
476 2xzl_A ATP-dependent helicase 92.1 0.81 2.8E-05 47.7 11.1 36 98-134 365-400 (802)
477 2dpy_A FLII, flagellum-specifi 92.1 0.12 4E-06 49.9 4.5 34 101-134 147-182 (438)
478 1nij_A Hypothetical protein YJ 92.1 0.061 2.1E-06 49.6 2.4 25 109-133 4-28 (318)
479 3vkg_A Dynein heavy chain, cyt 92.1 0.41 1.4E-05 56.9 9.6 154 102-276 1297-1490(3245)
480 2qnr_A Septin-2, protein NEDD5 92.1 0.064 2.2E-06 49.1 2.5 21 111-131 20-40 (301)
481 3fkq_A NTRC-like two-domain pr 92.0 0.12 4.2E-06 48.8 4.5 36 108-143 142-178 (373)
482 1ko7_A HPR kinase/phosphatase; 92.0 0.092 3.2E-06 48.0 3.4 25 108-132 143-167 (314)
483 2bcg_Y Protein YP2, GTP-bindin 92.0 0.082 2.8E-06 45.0 3.0 22 111-132 10-31 (206)
484 1ksh_A ARF-like protein 2; sma 92.0 0.066 2.3E-06 44.7 2.3 25 108-132 17-41 (186)
485 2npi_A Protein CLP1; CLP1-PCF1 92.0 0.079 2.7E-06 51.5 3.1 26 108-133 137-162 (460)
486 3la6_A Tyrosine-protein kinase 92.0 0.27 9.1E-06 44.5 6.5 47 97-143 74-127 (286)
487 3cmw_A Protein RECA, recombina 91.9 0.13 4.5E-06 57.5 5.1 37 108-144 1081-1117(1706)
488 3cph_A RAS-related protein SEC 91.9 0.09 3.1E-06 44.9 3.1 24 109-132 20-43 (213)
489 1ihu_A Arsenical pump-driving 91.9 0.16 5.4E-06 51.2 5.4 35 108-142 7-41 (589)
490 2h17_A ADP-ribosylation factor 91.9 0.07 2.4E-06 44.4 2.3 23 110-132 22-44 (181)
491 2q3h_A RAS homolog gene family 91.9 0.087 3E-06 44.6 3.0 24 109-132 20-43 (201)
492 1wcv_1 SOJ, segregation protei 91.9 0.15 5E-06 45.4 4.6 38 108-146 5-43 (257)
493 2woj_A ATPase GET3; tail-ancho 91.9 0.18 6.1E-06 47.2 5.3 35 109-143 18-54 (354)
494 2fv8_A H6, RHO-related GTP-bin 91.8 0.087 3E-06 45.0 2.9 23 110-132 26-48 (207)
495 2wjy_A Regulator of nonsense t 91.8 1 3.5E-05 47.0 11.4 36 99-135 362-397 (800)
496 3lxx_A GTPase IMAP family memb 91.8 0.086 3E-06 46.2 3.0 24 109-132 29-52 (239)
497 1u0l_A Probable GTPase ENGC; p 91.8 0.11 3.8E-06 47.4 3.8 33 99-132 160-192 (301)
498 2o52_A RAS-related protein RAB 91.8 0.084 2.9E-06 44.8 2.8 22 110-131 26-47 (200)
499 2ph1_A Nucleotide-binding prot 91.8 0.29 1E-05 43.5 6.5 29 108-136 17-46 (262)
500 2atx_A Small GTP binding prote 91.8 0.09 3.1E-06 44.2 2.9 22 111-132 20-41 (194)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.9e-42 Score=345.78 Aligned_cols=292 Identities=16% Similarity=0.145 Sum_probs=220.0
Q ss_pred cchhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHH----HhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 93 VGVESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFN----RISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 93 vGR~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
+||+.++++|.++|. ..++|+|+||||+||||||+++++ ++..+|+..+|+. ++.... .+...+...+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 499999999999986 468999999999999999999996 6888898888884 443211 3577888888
Q ss_pred HHHHhcCCC--C---CCC------HHHHHHHhcCC-cEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhhhhc
Q 048064 164 LSEVLKDVN--V---IPH------IDLNFRRLSCR-KVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVLRNC 231 (429)
Q Consensus 164 ~~~~~~~~~--~---~~~------~~~l~~~l~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 231 (429)
+.+++.... . ... ...+.+.+.++ ++||||||+|+.+++ .+.. .+||+||||||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 888875421 1 111 34488889996 999999999998866 2221 2799999999999988876
Q ss_pred C-CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHHHHHHHHH-HhhCC
Q 048064 232 H-INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEVWENAIKK-LKNFL 309 (429)
Q Consensus 232 ~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~~~~l~~-l~~~~ 309 (429)
+ ...+|+|++|+.++|++||.++++.... .+...+.+.+|+++|+|+||||+.+|+.++.+. ..|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhccc
Confidence 5 3467999999999999999999876532 356778899999999999999999999998764 233232322 22213
Q ss_pred CccHHHHHHHhhhcCChhhHHHHh-----------hhhcccCCcCHHHHHHHHHHc--CCCh-----------hhhHHHH
Q 048064 310 HQNILDVLKISYDDLDNDEKNIFL-----------DVACFFKGEDIYLVKKFFEAS--GFYP-----------EIGISIL 365 (429)
Q Consensus 310 ~~~i~~~l~~s~~~L~~~~~~~l~-----------~la~f~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L 365 (429)
...+..++..||+.|++..+.||+ +||+||++++++ ..+|.++ |+.. ..++++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 344555566666666666666666 999999987766 5677776 4432 2369999
Q ss_pred HHcCceeEcc---CCeEEccHHHHHHHHHHHhhhc
Q 048064 366 VDKALIAINS---YNKITMHDLLQELGREIVRQES 397 (429)
Q Consensus 366 ~~~sLi~~~~---~~~~~mH~lv~~~a~~~~~~~~ 397 (429)
+++||++... ..+|+|||+||+||++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 9999999754 3469999999999998776654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-38 Score=352.75 Aligned_cols=297 Identities=21% Similarity=0.292 Sum_probs=235.1
Q ss_pred CCCCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHH---hhcCcceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNR---ISRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
..+..||||+.++++|.++|. ..++|+|+||||+||||||++++++ ...+|+..+||.++..... ......
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 198 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGLLMK 198 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHHHHH
Confidence 667789999999999999993 7889999999999999999999987 3566888777766654221 123333
Q ss_pred HHHHHHHHhcCC----CCCCCHHH----HHHHhcCC--cEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhhh
Q 048064 160 QQKLLSEVLKDV----NVIPHIDL----NFRRLSCR--KVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVLR 229 (429)
Q Consensus 160 ~~~l~~~~~~~~----~~~~~~~~----l~~~l~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~ 229 (429)
...+...+.... ......+. +...+.++ ++||||||+|+..+++.+ ++|++||||||++.++.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 444555554432 12233444 44555555 999999999998776553 67999999999998874
Q ss_pred h-cCCCeEEEcCC-CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHHHHHHHHHHhh
Q 048064 230 N-CHINQIYEMKG-LGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEVWENAIKKLKN 307 (429)
Q Consensus 230 ~-~~~~~~~~l~~-L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~~~~l~~l~~ 307 (429)
. ......+.+++ |+.+|+++||...++... ....+.+.+|+++|+|+||||+++|++|+.++ ..|..+++.+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 4 44567789996 999999999998874332 23345689999999999999999999998766 569999998865
Q ss_pred CCC-----------ccHHHHHHHhhhcCChhhHHHHhhhhcccCC--cCHHHHHHHHHHcCCChhhhHHHHHHcCceeEc
Q 048064 308 FLH-----------QNILDVLKISYDDLDNDEKNIFLDVACFFKG--EDIYLVKKFFEASGFYPEIGISILVDKALIAIN 374 (429)
Q Consensus 308 ~~~-----------~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~ 374 (429)
... ..+..+|..||+.|++++|.||++||+||++ ++.+.+..+|..++......+++|+++||++..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEe
Confidence 431 3589999999999999999999999999987 577899999977666677889999999999987
Q ss_pred cCCe---EEccHHHHHHHHHHHhhh
Q 048064 375 SYNK---ITMHDLLQELGREIVRQE 396 (429)
Q Consensus 375 ~~~~---~~mH~lv~~~a~~~~~~~ 396 (429)
.++. |+||+++|+|+++.+.++
T Consensus 428 ~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cCCCceEEEecHHHHHHHHhhhhHH
Confidence 6664 999999999999987655
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-37 Score=321.00 Aligned_cols=296 Identities=17% Similarity=0.152 Sum_probs=215.8
Q ss_pred CcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHH--HhhcCcceeEEEeechhhhhhcCCHHHHHHHHH
Q 048064 90 NELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFN--RISRNFKGSCFLENIREESQKAGGLAFLQQKLL 164 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~ 164 (429)
...|||+.++++|.++|. +.++|+|+||||+||||||+++++ +++.+|+..++|.+++.. .+...+...+.
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHHH
Confidence 345999999999999986 578999999999999999999997 478889986666556542 33445545544
Q ss_pred HHHhc---C-CCCCC-------CH----HHHHHHh---cCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChh
Q 048064 165 SEVLK---D-VNVIP-------HI----DLNFRRL---SCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQ 226 (429)
Q Consensus 165 ~~~~~---~-~~~~~-------~~----~~l~~~l---~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 226 (429)
..+.. . ..... .. +.+...+ .++++||||||+|+.++++.+. +||+||||||+..
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChH
Confidence 43221 1 00100 11 1244444 6799999999999998888752 6999999999998
Q ss_pred hhhhcCCCeEEEcC------CCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCC--CHHHH
Q 048064 227 VLRNCHINQIYEMK------GLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFER--KKEVW 298 (429)
Q Consensus 227 ~~~~~~~~~~~~l~------~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~--~~~~~ 298 (429)
++..+.....+.++ +|+.+||++||.+.. ... . .+...+ .|+|+||||+++|+.|+.+ +...|
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 87543322345565 899999999999884 222 1 122333 3999999999999999876 66778
Q ss_pred HHHHHHHhhCCCccHHHHHHHhhhcCChhh-HHHHhhhhcccCC--cCHHHHHHHHHHcCC-ChhhhHHHHHHcCceeEc
Q 048064 299 ENAIKKLKNFLHQNILDVLKISYDDLDNDE-KNIFLDVACFFKG--EDIYLVKKFFEASGF-YPEIGISILVDKALIAIN 374 (429)
Q Consensus 299 ~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~-~~~l~~la~f~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~~ 374 (429)
... ....+..+|..||+.|++++ |.||++||+||.+ ++.+.+..+|.+++. .....+++|+++||++.+
T Consensus 348 ~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 348 KHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC
T ss_pred hcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEe
Confidence 653 35679999999999999999 9999999999986 456788899977642 356789999999999986
Q ss_pred c-CCeEEccHHHHHHHHHHHhhhcCCCCCcccCCCcchHHHHH
Q 048064 375 S-YNKITMHDLLQELGREIVRQESTNPGNRTRLWHHEDIYEVL 416 (429)
Q Consensus 375 ~-~~~~~mH~lv~~~a~~~~~~~~~~~~~~~rl~~~~~i~~~l 416 (429)
+ .++|+||+++++++. .....+..+.|+..+..+.+++
T Consensus 421 ~~~~rYrMHDLllELr~----~~~e~~alHrRLvd~Y~~~~vf 459 (1221)
T 1vt4_I 421 PKESTISIPSIYLELKV----KLENEYALHRSIVDHYNIPKTF 459 (1221)
T ss_dssp SSSSEEBCCCHHHHHHH----HHSCCTTHHHHHHHHHHHHHHC
T ss_pred CCCCEEEehHHHHHHhc----CCCcHHHHHHHHHHHHHhhCcC
Confidence 3 568999999988431 1113344555555444444433
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=313.95 Aligned_cols=292 Identities=22% Similarity=0.297 Sum_probs=219.4
Q ss_pred CCCCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh---hcCcceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI---SRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
..+..||||+.++++|.+++. +.++|+|+||||+||||||.+++++. ..+|+..++|.++..... ..+...
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~--~~~~~~ 198 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK--SGLLMK 198 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH--HHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch--HHHHHH
Confidence 567789999999999999986 57899999999999999999999864 677875555554543211 111122
Q ss_pred HHHHHHHHhcC----CCCCCCHHH----HHHHhcC--CcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhhh
Q 048064 160 QQKLLSEVLKD----VNVIPHIDL----NFRRLSC--RKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVLR 229 (429)
Q Consensus 160 ~~~l~~~~~~~----~~~~~~~~~----l~~~l~~--~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~ 229 (429)
...+...+... .......+. +...+.+ +++||||||+|+...++.+ +++++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 22233333321 112223333 4555554 7899999999998766542 57899999999998776
Q ss_pred hcCCCeEEEc---CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcCCCHHHHHHHHHHHh
Q 048064 230 NCHINQIYEM---KGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFERKKEVWENAIKKLK 306 (429)
Q Consensus 230 ~~~~~~~~~l---~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~~~~~l~~l~ 306 (429)
.+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||+++|++++... ..|...++.+.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 543 234444 58999999999999875421 12235688999999999999999999997754 36888888876
Q ss_pred hCC-----------CccHHHHHHHhhhcCChhhHHHHhhhhcccCC--cCHHHHHHHHHHcCCChhhhHHHHHHcCceeE
Q 048064 307 NFL-----------HQNILDVLKISYDDLDNDEKNIFLDVACFFKG--EDIYLVKKFFEASGFYPEIGISILVDKALIAI 373 (429)
Q Consensus 307 ~~~-----------~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~ 373 (429)
... ..++..++..||+.|+++.+.||.++|+||.+ ++.+.+..+|..+.......++.|+++||+..
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEE
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEE
Confidence 532 24688999999999999999999999999875 67788888886654456678999999999997
Q ss_pred ccC---CeEEccHHHHHHHHHH
Q 048064 374 NSY---NKITMHDLLQELGREI 392 (429)
Q Consensus 374 ~~~---~~~~mH~lv~~~a~~~ 392 (429)
..+ .+|+||+++|+++++.
T Consensus 427 ~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 427 DRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEETTEEEEECCHHHHHHHHHH
T ss_pred ecCCCccEEEEcHHHHHHHHhh
Confidence 543 2699999999999987
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.84 E-value=3.7e-19 Score=169.83 Aligned_cols=286 Identities=16% Similarity=0.192 Sum_probs=173.9
Q ss_pred CCCCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh--hcCCHHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ--KAGGLAFLQQKLL 164 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 164 (429)
..+..|+||+.++++|.+++...+++.|+|++|+|||||+++++++. . .+|+ ++..... .......+...+.
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNER----P-GILI-DCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS----S-EEEE-EHHHHHHTTTCBCHHHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc----C-cEEE-EeecccccccCCCHHHHHHHHH
Confidence 55678999999999999998744899999999999999999999875 1 3443 3333210 0113333344333
Q ss_pred HHHhc-----------------C-CCCCCCHHHHHHHh----c-CCcEEEEecCCCCHH--------HHHHHhccCCCCC
Q 048064 165 SEVLK-----------------D-VNVIPHIDLNFRRL----S-CRKVLIVLDDVTCLN--------QIESLVGSLDRLL 213 (429)
Q Consensus 165 ~~~~~-----------------~-~~~~~~~~~l~~~l----~-~~~~LlVlDdv~~~~--------~~~~l~~~l~~~~ 213 (429)
..+.. . .........+...+ . .++++|||||++... .+..++..+....
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~ 162 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL 162 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc
Confidence 32211 0 00113344433333 2 138999999997633 2222222211112
Q ss_pred CCCEEEEEeCChhhhhh----------c--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH
Q 048064 214 PESRILITTRNKQVLRN----------C--HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL 281 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~~~----------~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL 281 (429)
++..+|+|++....+.. + .....+++.+|+.+|+.+++.......... ...+.+..+++.++|+|+
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPG 240 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 57889999887543221 1 123578999999999999998764322211 113567899999999999
Q ss_pred HHHHHHHhhcC-CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcC---ChhhHHHHhhhhcccCCcCHHHHHHHHHHc--C
Q 048064 282 ALKILGCYLFE-RKKEVWENAIKKLKNFLHQNILDVLKISYDDL---DNDEKNIFLDVACFFKGEDIYLVKKFFEAS--G 355 (429)
Q Consensus 282 ai~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~~~~l~~la~f~~~~~~~~l~~~~~~~--~ 355 (429)
++..++..+.. .+...+ ...+.. .+...+...+..+ ++..+.++..+|+ ...+...+...+... +
T Consensus 241 ~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~ 311 (350)
T 2qen_A 241 WLVVFGVEYLRNGDFGRA---MKRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTK 311 (350)
T ss_dssp HHHHHHHHHHHHCCHHHH---HHHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccHhHH---HHHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCC
Confidence 99998875422 222211 111111 1112222223333 7888999999998 345666666655321 2
Q ss_pred CC---hhhhHHHHHHcCceeEccCCeEEc-cHHHHHHHH
Q 048064 356 FY---PEIGISILVDKALIAINSYNKITM-HDLLQELGR 390 (429)
Q Consensus 356 ~~---~~~~l~~L~~~sLi~~~~~~~~~m-H~lv~~~a~ 390 (429)
.. ...+++.|.+.+||... ++.|.+ |++++.|.+
T Consensus 312 ~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 312 IPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 22 24579999999999886 466665 788888754
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.83 E-value=1.4e-19 Score=173.16 Aligned_cols=286 Identities=17% Similarity=0.201 Sum_probs=171.4
Q ss_pred CCCCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhh-hhcCCHHHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREES-QKAGGLAFLQQKLLS 165 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 165 (429)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+ ++.... ............+..
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINELNLP---YIYL-DLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEE-EGGGGTTCSCCCHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEE-EchhhccccCCCHHHHHHHHHH
Confidence 456789999999999999 877 799999999999999999999887532 3444 333220 000122222222222
Q ss_pred HHh-------------cCC-----C-----------CCCCHHHHHHHhcC---CcEEEEecCCCCHH-----HHHHHhcc
Q 048064 166 EVL-------------KDV-----N-----------VIPHIDLNFRRLSC---RKVLIVLDDVTCLN-----QIESLVGS 208 (429)
Q Consensus 166 ~~~-------------~~~-----~-----------~~~~~~~l~~~l~~---~~~LlVlDdv~~~~-----~~~~l~~~ 208 (429)
.+. ... + ....+..+...+.. ++++|||||++... .+..++..
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHH
Confidence 111 000 0 12344455444432 48999999997532 11112221
Q ss_pred CCCCCCCCEEEEEeCChhhhhh----------c-C-CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHh
Q 048064 209 LDRLLPESRILITTRNKQVLRN----------C-H-INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYA 276 (429)
Q Consensus 209 l~~~~~~~~iiiTtR~~~~~~~----------~-~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (429)
+....++..+|+|++....... + + ....+.+.+|+.+|+.+++...+......... ...+++.+
T Consensus 164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t 239 (357)
T 2fna_A 164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKI 239 (357)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHH
T ss_pred HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHh
Confidence 1111246789999997643221 1 1 13679999999999999998765321111111 27899999
Q ss_pred CCChHHHHHHHHhhcC-CCHHHHHHHHHHHhhCCCccHHHHHHHhh---hcCChhhHHHHhhhhcccCCcCHHHHHHHHH
Q 048064 277 QGVPLALKILGCYLFE-RKKEVWENAIKKLKNFLHQNILDVLKISY---DDLDNDEKNIFLDVACFFKGEDIYLVKKFFE 352 (429)
Q Consensus 277 ~G~PLai~~~~~~l~~-~~~~~~~~~l~~l~~~~~~~i~~~l~~s~---~~L~~~~~~~l~~la~f~~~~~~~~l~~~~~ 352 (429)
+|+|+++..++..+.. .+...|.. .+.......+...+...+ ..+++..+.++..+|+ . . +...+...+.
T Consensus 240 ~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~ 313 (357)
T 2fna_A 240 GGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALE 313 (357)
T ss_dssp CSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHH
Confidence 9999999999876532 23322321 111100011111222111 1678889999999998 3 3 6666665432
Q ss_pred -HcC--CC---hhhhHHHHHHcCceeEccCCeEE-ccHHHHHHH
Q 048064 353 -ASG--FY---PEIGISILVDKALIAINSYNKIT-MHDLLQELG 389 (429)
Q Consensus 353 -~~~--~~---~~~~l~~L~~~sLi~~~~~~~~~-mH~lv~~~a 389 (429)
..+ .. ....++.|.+.+||...+ +.|+ .|++++++.
T Consensus 314 ~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 314 LEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 223 22 345799999999999874 6676 588998874
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.78 E-value=1.9e-17 Score=161.71 Aligned_cols=289 Identities=13% Similarity=0.075 Sum_probs=170.7
Q ss_pred CCCCcccchhhHHHHHHHhh-c--------CCCEEEE--EcCCCcchHHHHHHHHHHhhcC-----cceeEEEeechhhh
Q 048064 87 DSKNELVGVESRVEEIQSLL-G--------AAPLLGI--WGIGGIGKTTIARVIFNRISRN-----FKGSCFLENIREES 150 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l-~--------~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~ 150 (429)
..+..|+||+.++++|.+++ . ..+.+.| +|++|+|||||++.+++..... +...+.+.++..
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN-- 96 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG--
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC--
Confidence 44578999999999999988 3 3567888 9999999999999999987543 233333333322
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCC-CCCH----HHHHHHhc--CCcEEEEecCCCCH--------HHHHHHhccCCCC---
Q 048064 151 QKAGGLAFLQQKLLSEVLKDVNV-IPHI----DLNFRRLS--CRKVLIVLDDVTCL--------NQIESLVGSLDRL--- 212 (429)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~----~~l~~~l~--~~~~LlVlDdv~~~--------~~~~~l~~~l~~~--- 212 (429)
......+...++..++..... .... ..+...+. +++++|||||++.. +.+..+...+...
T Consensus 97 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 97 --APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp --CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred --CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 345667777777776544221 1112 22444443 67999999999754 3333333332211
Q ss_pred C--CCCEEEEEeCChhhhhhc---------CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhC----
Q 048064 213 L--PESRILITTRNKQVLRNC---------HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQ---- 277 (429)
Q Consensus 213 ~--~~~~iiiTtR~~~~~~~~---------~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---- 277 (429)
+ .+..+|+||+...+...+ .....+.+++|+.+++.++|...+........-..+.+..+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 344577788765432111 1123499999999999999976642111111112456888999999
Q ss_pred --CChHHHHHHHHhhc------C---CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhccc----CCc
Q 048064 278 --GVPLALKILGCYLF------E---RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFF----KGE 342 (429)
Q Consensus 278 --G~PLai~~~~~~l~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~----~~~ 342 (429)
|+|..+..++.... . -+...+........ . ...+..++..|++..+.++..++.+. ..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~---~---~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE---A---ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---c---cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99977665543321 1 12233332222210 0 23344567889999999999888754 234
Q ss_pred CHHHHHH----HH-HHcCCC------hhhhHHHHHHcCceeEcc-----CCeEEccHHH
Q 048064 343 DIYLVKK----FF-EASGFY------PEIGISILVDKALIAINS-----YNKITMHDLL 385 (429)
Q Consensus 343 ~~~~l~~----~~-~~~~~~------~~~~l~~L~~~sLi~~~~-----~~~~~mH~lv 385 (429)
+...+.. +. ...+.. ....++.|.+.|||.... .|+|++|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5543322 23 222321 235689999999998642 3445555444
No 8
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.77 E-value=2e-19 Score=150.81 Aligned_cols=82 Identities=38% Similarity=0.560 Sum_probs=72.0
Q ss_pred CCCcEEEeEeeecccccccccccchHHHHHHhhhh-CHHHHHHHHHHHHHHHhhcCCccCCCCchHHHHHHHhhhhhccC
Q 048064 2 VYAQIVIPVFYRVDPSHVRKQIGSFGVSFSKLKEK-FPEKMQRWRSALTEAANLSGFDSFVIRNESELIKKVVNDILEKL 80 (429)
Q Consensus 2 ~~~~~v~pvfy~v~p~~vr~~~~~~~~~~~~~~~~-~~~~~~~w~~al~~~~~~~~~~~~~~~~e~~~i~~i~~~~~~~~ 80 (429)
..|++||||||+|+|++||+|+|+||++|.+|..+ -.+++++|+.||+++|+++|++ . ..+|+++|++|++++.+.+
T Consensus 93 ~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~-~-~~~e~~~i~~Iv~~v~~~l 170 (176)
T 3jrn_A 93 KGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDC-S-GDDDSKLVDKIANEISNKK 170 (176)
T ss_dssp TTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEE-C-CSCHHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhccccee-c-CCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999887 4567999999999999999998 4 4779999999999999999
Q ss_pred Ccccc
Q 048064 81 PKVVP 85 (429)
Q Consensus 81 ~~~~p 85 (429)
.+.+|
T Consensus 171 ~~~~~ 175 (176)
T 3jrn_A 171 TIYAT 175 (176)
T ss_dssp C----
T ss_pred cCCCC
Confidence 87665
No 9
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.73 E-value=1.1e-18 Score=148.47 Aligned_cols=79 Identities=33% Similarity=0.632 Sum_probs=71.9
Q ss_pred CCcEEEeEeeecccccccccccchHHHHHHhhhhCH-HHHHHHHHHHHHHHhhcCCccCCCCchHHHHHHHhhhhhccCC
Q 048064 3 YAQIVIPVFYRVDPSHVRKQIGSFGVSFSKLKEKFP-EKMQRWRSALTEAANLSGFDSFVIRNESELIKKVVNDILEKLP 81 (429)
Q Consensus 3 ~~~~v~pvfy~v~p~~vr~~~~~~~~~~~~~~~~~~-~~~~~w~~al~~~~~~~~~~~~~~~~e~~~i~~i~~~~~~~~~ 81 (429)
.|++||||||+|+|++||+|.|+||++|.+|..++. +++++|+.||+++|+++|++......+.+++++|++++..+++
T Consensus 122 ~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~ 201 (204)
T 3ozi_A 122 PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHIS 201 (204)
T ss_dssp TTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999998875 5699999999999999999956667789999999999987764
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=5.2e-15 Score=142.96 Aligned_cols=268 Identities=16% Similarity=0.065 Sum_probs=167.3
Q ss_pred CCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcC------c-ceeEEEeechhhhhhcC-
Q 048064 89 KNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRN------F-KGSCFLENIREESQKAG- 154 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f-~~~~~~~~~~~~~~~~~- 154 (429)
+..|+||+.+++++..++. ..+.+.|+|++|+|||+||+.+++.+... + ...+.+.++.. ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE----VGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH----HCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc----CCC
Confidence 4789999999999998775 36789999999999999999999987443 2 33333333332 23
Q ss_pred CHHHHHHHHHHHHhcCCCC---C---CCHHHHHHHhcCCcEEEEecCCCCHHH-------HHHHhccCCCCCCCCEEEEE
Q 048064 155 GLAFLQQKLLSEVLKDVNV---I---PHIDLNFRRLSCRKVLIVLDDVTCLNQ-------IESLVGSLDRLLPESRILIT 221 (429)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~---~---~~~~~l~~~l~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~~~~~~iiiT 221 (429)
....+...++..+...... . .....+...+..++.+|||||++.... +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 5556666666666332111 1 113336666766666999999976532 22333222 67788888
Q ss_pred eCChhhhhhc------CCCeEEEcCCCCHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHHHhC---CChHHHH-HHHH
Q 048064 222 TRNKQVLRNC------HINQIYEMKGLGDDHALELFIRHAFR---QNLVDVDYKELSDKVINYAQ---GVPLALK-ILGC 288 (429)
Q Consensus 222 tR~~~~~~~~------~~~~~~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~~~~i~~~~~---G~PLai~-~~~~ 288 (429)
|+.......+ .....+.+++++.++..+++...+.. ....+ .+..+.+++.++ |+|..+. .+-.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 8865221111 11238999999999999999987532 12222 345677888888 9997443 3222
Q ss_pred hh--c----CCCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhcccCCcCH-HHHHHHHHHcCCC----
Q 048064 289 YL--F----ERKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFFKGEDI-YLVKKFFEASGFY---- 357 (429)
Q Consensus 289 ~l--~----~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~~~-~~l~~~~~~~~~~---- 357 (429)
.. . .-+.+.+...+.... ...+..++..|++..+.++..++....+-+. .....+....|..
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCH
Confidence 21 1 234566666665542 2346677889999999988888761110111 2333344332211
Q ss_pred --hhhhHHHHHHcCceeEc
Q 048064 358 --PEIGISILVDKALIAIN 374 (429)
Q Consensus 358 --~~~~l~~L~~~sLi~~~ 374 (429)
....++.|.+.|+++..
T Consensus 321 ~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 13468899999999964
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=1.2e-14 Score=140.16 Aligned_cols=277 Identities=16% Similarity=0.095 Sum_probs=163.8
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEeechhhhhhcCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLENIREESQKAGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~ 158 (429)
..+..|+||+.+++.+.+++. ..+.+.|+|++|+|||||++.+++.+...+ ...+.+.++.. ......
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----IDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----HCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----CCCHHH
Confidence 455889999999999999886 367899999999999999999999876543 22333333322 223444
Q ss_pred HHHHHHHHHhcCCCC-CCCH----HHHHHHhc--CCcEEEEecCCCCH------HHHHHHhccCCC-CCCCCEEEEEeCC
Q 048064 159 LQQKLLSEVLKDVNV-IPHI----DLNFRRLS--CRKVLIVLDDVTCL------NQIESLVGSLDR-LLPESRILITTRN 224 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~-~~~~----~~l~~~l~--~~~~LlVlDdv~~~------~~~~~l~~~l~~-~~~~~~iiiTtR~ 224 (429)
+...+...+...... .... +.+...+. +++.+||||+++.. ..+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 455554444322111 1112 22444443 34899999999653 233344333321 1345567777776
Q ss_pred hhhhhhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhC---CChHHHHHHHHhhc---
Q 048064 225 KQVLRNCH-------INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQ---GVPLALKILGCYLF--- 291 (429)
Q Consensus 225 ~~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~PLai~~~~~~l~--- 291 (429)
......+. ....+.+++++.++..+++...+........-..+..+.+++.++ |+|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 54322221 125899999999999999988653211111122455677777777 99985544333221
Q ss_pred ------CCCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhcccC----CcCHHHH----HHHHHHcCCC
Q 048064 292 ------ERKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFFK----GEDIYLV----KKFFEASGFY 357 (429)
Q Consensus 292 ------~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~----~~~~~~l----~~~~~~~~~~ 357 (429)
.-+...+..++.... ...+..++..+++..+.++..++.+.. .++...+ ..+....+..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 123444444444432 235666788899999988888885432 2334322 2333322221
Q ss_pred ------hhhhHHHHHHcCceeEc
Q 048064 358 ------PEIGISILVDKALIAIN 374 (429)
Q Consensus 358 ------~~~~l~~L~~~sLi~~~ 374 (429)
....++.|.+.|+|+..
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 23478999999999864
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=3.6e-14 Score=137.23 Aligned_cols=299 Identities=13% Similarity=0.063 Sum_probs=178.0
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCC--EEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAP--LLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~--~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 158 (429)
..+..++||+.+++++..++. ... .+.|+|++|+|||||++.+++.........+.+.++.. ......
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~----~~~~~~ 89 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI----YRNFTA 89 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT----CCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc----CCCHHH
Confidence 445789999999999999886 224 89999999999999999999987654222223333322 234556
Q ss_pred HHHHHHHHHhcCCCC-CCCHHH----HHHHh--cCCcEEEEecCCCC--HHHHHHHhccCCCCC----CCCEEEEEeCCh
Q 048064 159 LQQKLLSEVLKDVNV-IPHIDL----NFRRL--SCRKVLIVLDDVTC--LNQIESLVGSLDRLL----PESRILITTRNK 225 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~-~~~~~~----l~~~l--~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~----~~~~iiiTtR~~ 225 (429)
+...+...+...... ...... +...+ .+++.+|||||++. ......+...+.... .+..+|++|+..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 666666665443211 112222 33333 25688999999975 345555555544322 366788887766
Q ss_pred hhhhhcC-------CCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHh---------CCChHHHHHHHHh
Q 048064 226 QVLRNCH-------INQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYA---------QGVPLALKILGCY 289 (429)
Q Consensus 226 ~~~~~~~-------~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~PLai~~~~~~ 289 (429)
.....+. ....+.+++++.++..+++...+........-..+..+.+++.+ +|+|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4332221 12369999999999999998876431101112246778899999 7998766555433
Q ss_pred hc------C---CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhccc---C--CcCHHHHHHHH----
Q 048064 290 LF------E---RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFF---K--GEDIYLVKKFF---- 351 (429)
Q Consensus 290 l~------~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~---~--~~~~~~l~~~~---- 351 (429)
.. . -+.+.......... ... +...+..|+.+.+.++..++.+. . .++...+....
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~~---~~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVL---FGI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHS---CCC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHh---hhh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 21 1 12233333333221 111 23345678888898888888654 2 34444443332
Q ss_pred HHcCCC------hhhhHHHHHHcCceeEccC-------CeE-------EccHHHHHHHHHHHhhh
Q 048064 352 EASGFY------PEIGISILVDKALIAINSY-------NKI-------TMHDLLQELGREIVRQE 396 (429)
Q Consensus 352 ~~~~~~------~~~~l~~L~~~sLi~~~~~-------~~~-------~mH~lv~~~a~~~~~~~ 396 (429)
...+.. ....++.|...|+|..... |++ ..|+++..+...++.++
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 222211 2247899999999997433 222 24566666666655543
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.65 E-value=9.3e-14 Score=134.10 Aligned_cols=273 Identities=15% Similarity=0.085 Sum_probs=165.2
Q ss_pred CCCCcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc-----ceeEEEeechhhhhhcCC
Q 048064 87 DSKNELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF-----KGSCFLENIREESQKAGG 155 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~~~~~~~~ 155 (429)
..+..|+||+.+++++..++. ..+.+.|+|++|+||||+|+.+++...... ...+.+.++.. ...
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----RET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----SCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----CCC
Confidence 445789999999999999883 567899999999999999999999875431 33333333332 344
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCH----HHHHHHh--cCCcEEEEecCCCCHHH-------HHHHhccCCCC--CCCCEEE
Q 048064 156 LAFLQQKLLSEVLKDVNVI-PHI----DLNFRRL--SCRKVLIVLDDVTCLNQ-------IESLVGSLDRL--LPESRIL 219 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~-~~~----~~l~~~l--~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~--~~~~~ii 219 (429)
...+...+...+....... ... ..+...+ .+++.+|||||++.... +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 5566667777665432211 112 2244444 34588999999986532 22223222221 3456677
Q ss_pred EEeCChhh--------hhhcCCCeEEEcCCCCHHHHHHHHHHhhhc---CCCCChhHHHHHHHHHHHhC---CChHHHHH
Q 048064 220 ITTRNKQV--------LRNCHINQIYEMKGLGDDHALELFIRHAFR---QNLVDVDYKELSDKVINYAQ---GVPLALKI 285 (429)
Q Consensus 220 iTtR~~~~--------~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~---~~~~~~~~~~~~~~i~~~~~---G~PLai~~ 285 (429)
+||+.... ...+ ....+.+++++.++..+++...+.. ....+ .+..+.+++.++ |+|..+..
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ 247 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALD 247 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHH
Confidence 77776522 1111 1257899999999999999887532 12222 245677888888 99954433
Q ss_pred HHHhh----c--C---CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhcccCC---cCHHHHH----H
Q 048064 286 LGCYL----F--E---RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFFKG---EDIYLVK----K 349 (429)
Q Consensus 286 ~~~~l----~--~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~---~~~~~l~----~ 349 (429)
+.... . + -+.+.+..++.... ...+..++..|++..+.++..++.+..+ +....+. .
T Consensus 248 ~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 248 LLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 32221 1 1 23455555554432 2345667889999999888888754333 3333222 2
Q ss_pred HHHHcCCC------hhhhHHHHHHcCceeEc
Q 048064 350 FFEASGFY------PEIGISILVDKALIAIN 374 (429)
Q Consensus 350 ~~~~~~~~------~~~~l~~L~~~sLi~~~ 374 (429)
++...+.. ....++.|...|+++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22222221 23468899999999874
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.52 E-value=5.7e-13 Score=119.71 Aligned_cols=185 Identities=16% Similarity=0.129 Sum_probs=118.7
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCccee--------------------EEE
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGS--------------------CFL 143 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~--------------------~~~ 143 (429)
.....++||+..++.|..++. ..+.+.|+|++|+||||||+.+++.+...+... .+.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 334679999999999999987 335899999999999999999998775432110 000
Q ss_pred eechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEE
Q 048064 144 ENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILIT 221 (429)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiT 221 (429)
..... .. .......++..+... ...+++.+|||||++. ...++.+...+.....+..+|+|
T Consensus 100 ~~~~~----~~-~~~~~~~~~~~~~~~------------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~ 162 (250)
T 1njg_A 100 IDAAS----RT-KVEDTRDLLDNVQYA------------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 162 (250)
T ss_dssp EETTC----GG-GHHHHHHHHHSCCCS------------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred ecCcc----cc-cHHHHHHHHHHhhhc------------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEE
Confidence 00000 00 000011111111000 0134678999999974 45566666666554567788888
Q ss_pred eCChhhh-hh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhh
Q 048064 222 TRNKQVL-RN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYL 290 (429)
Q Consensus 222 tR~~~~~-~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l 290 (429)
|+..... .. ......+.+++++.++..+++...+...... -..+....+++.++|+|..+..+...+
T Consensus 163 t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 163 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765321 11 1234689999999999999998877543321 123567889999999999988776543
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.46 E-value=8.8e-13 Score=116.81 Aligned_cols=185 Identities=13% Similarity=0.176 Sum_probs=116.6
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
.....++|++..++.+.+++. ..+.+.|+|++|+|||++|+.+++.+... +...+...+... ......+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 89 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD----ERGIDVVRHKI 89 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC----TTCHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc----ccChHHHHHHH
Confidence 344679999999999999987 33459999999999999999999986433 222222222211 12222222211
Q ss_pred HHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCChhh-hhh-cCCCeEEEc
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNKQV-LRN-CHINQIYEM 239 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~-~~~~~~~~l 239 (429)
........ ...+++.+|||||++.. ...+.+...+.....++.+|+||+.... ... ......+.+
T Consensus 90 -~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 90 -KEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp -HHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred -HHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 11111100 01246789999999754 3445555544444567788888876532 111 123458899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 240 KGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 240 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
++++.++..+++...+...... -..+....+++.++|+|..+..+..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999998876432221 1235678899999999997655443
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=3.1e-11 Score=113.39 Aligned_cols=182 Identities=14% Similarity=0.238 Sum_probs=113.7
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
.....++|++..++.|..++. ..+.+.|+|++|+|||++|+.+++.+... +...+...+... ..+...+ +.+
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----~~~~~~i-~~~ 92 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD----DRGIDVV-RNQ 92 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS----CCSHHHH-HTH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc----ccChHHH-HHH
Confidence 334679999999999999987 33449999999999999999999986432 222222222211 1122221 222
Q ss_pred HHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCChhh-hhh-cCCCeEEE
Q 048064 164 LSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNKQV-LRN-CHINQIYE 238 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~-~~~~~~~~ 238 (429)
...+..... .+ .+++.++||||++.. ...+.+...+....+++.+|+||+...- .+. ......++
T Consensus 93 ~~~~~~~~~----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 93 IKHFAQKKL----------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHHHHBCC----------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHHHHhccc----------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 222211000 01 345789999999753 4455555555444567788887766432 121 12345899
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 239 MKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 239 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
+.+++.++..+++...+...... -..+.+..+++.++|+|..+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999998876432211 1135678899999999965433
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.30 E-value=3.5e-10 Score=106.35 Aligned_cols=249 Identities=15% Similarity=0.121 Sum_probs=146.0
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
.....|+|++..++.+..++. ..+.+.|+|++|+|||++|+.+++..... +.+.+.... .....
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~----~~~~~~~~~----~~~~~- 79 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN----LRVTSGPAI----EKPGD- 79 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC----EEEECTTTC----CSHHH-
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC----EEEEecccc----CChHH-
Confidence 445789999999999988875 34689999999999999999999877422 222222211 11111
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhc---CCcEEEEecCCCCHH--HHHHHhccCCCC------------------CCCC
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRLS---CRKVLIVLDDVTCLN--QIESLVGSLDRL------------------LPES 216 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~--~~~~l~~~l~~~------------------~~~~ 216 (429)
+...+. ..+.+|+|||++... ....+...+... .++.
T Consensus 80 --------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 80 --------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp --------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred --------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 111121 246799999997542 333333222111 1235
Q ss_pred EEEEEeCChh-hhhhc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhcC-
Q 048064 217 RILITTRNKQ-VLRNC--HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLFE- 292 (429)
Q Consensus 217 ~iiiTtR~~~-~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~- 292 (429)
.+|.||.... +...+ .....+.+++++.++..+++...+...... -..+....++..++|+|..+..+...+..
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 5666665432 21111 123578999999999999998876433221 12466788999999999988777655432
Q ss_pred --------CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhccc--CCcCHHHHHHHHHHcCCChhhhH
Q 048064 293 --------RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFF--KGEDIYLVKKFFEASGFYPEIGI 362 (429)
Q Consensus 293 --------~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l 362 (429)
-+.......+..+ ..+...+++.++..+..+.... ++++...+...++.+.......+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 1223333332222 1223456777777776655332 34566666665532111112223
Q ss_pred HH-HHHcCceeEccCCe
Q 048064 363 SI-LVDKALIAINSYNK 378 (429)
Q Consensus 363 ~~-L~~~sLi~~~~~~~ 378 (429)
+. +++.+++.....|+
T Consensus 286 ~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HHHHHHTTSEEEETTEE
T ss_pred hHHHHHhcchhcCCccc
Confidence 33 88899998775554
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=4.9e-11 Score=112.22 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=115.7
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc-ceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF-KGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
....+++|++..++.+..++. ..+.+.|+|++|+||||+|+.+++.+.... ...+...+...... ...... .
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~----~ 96 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-INVIRE----K 96 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-HHTTHH----H
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-hHHHHH----H
Confidence 445679999999999999887 444699999999999999999999864332 11122222211111 000111 1
Q ss_pred HHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCChhh-hhhc-CCCeEEEc
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNKQV-LRNC-HINQIYEM 239 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~~-~~~~~~~l 239 (429)
........+ ...+++.++|+||++.. .....+...+.....++++|+||..... ...+ .....+.+
T Consensus 97 ~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 97 VKEFARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp HHHHHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred HHHHHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 111100000 01256789999999743 4555565555544567788888876532 1111 12347899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHh
Q 048064 240 KGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCY 289 (429)
Q Consensus 240 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~ 289 (429)
.+++.++..+++...+...... -..+....+++.++|+|..+..+...
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999998876433211 12456788999999999876555443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.20 E-value=8.9e-10 Score=105.64 Aligned_cols=190 Identities=13% Similarity=0.101 Sum_probs=117.0
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
.....++|++..++.|...+. ..+.+.|+|++|+||||+|+.+++.+....... ...+.. ... ...+
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~--~~~~~~-------~~~-~~~~ 82 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT--ATPCGV-------CDN-CREI 82 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC--SSCCSS-------SHH-HHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC--CCCCcc-------cHH-HHHH
Confidence 344679999999999999887 345789999999999999999998764322100 000000 000 0000
Q ss_pred HHHH-------hcC-CCCCCCHHHHHHHhc-----CCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCChh-h
Q 048064 164 LSEV-------LKD-VNVIPHIDLNFRRLS-----CRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNKQ-V 227 (429)
Q Consensus 164 ~~~~-------~~~-~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~~-~ 227 (429)
.... ... ......+..+...+. +++.++||||++. ....+.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 000 011233444444433 4568999999974 3456666666655455667777766442 2
Q ss_pred hhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 228 LRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 228 ~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
... ......+++.+++.++..+++...+...... -..+.+..+++.++|+|..+..+..
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 111 2234789999999999999998776332211 1235678899999999998866553
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.19 E-value=4.7e-10 Score=105.06 Aligned_cols=185 Identities=12% Similarity=0.140 Sum_probs=115.9
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
....+++|++..++.+.+++. ..+.+.|+|++|+|||++|+.+++.+... +...+...+...... ..........+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 92 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVRHKIKEF 92 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-TTTSSHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-hHHHHHHHHHH
Confidence 344679999999999999987 33359999999999999999999986322 221112222211100 01111111111
Q ss_pred HHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCChh-hhhh-cCCCeEEEc
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNKQ-VLRN-CHINQIYEM 239 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~-~~~~~~~~l 239 (429)
.. ... ...+++.++||||++.. ...+.+...+....+++.+|+||.... +.+. ......+.+
T Consensus 93 ~~----~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 93 AR----TAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp HH----SCC----------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEEC
T ss_pred Hh----cCC----------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEe
Confidence 10 000 00246789999999744 456667777766566777887776543 2221 123458999
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 240 KGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 240 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
.+++.++..+++...+...... -..+....+++.++|++..+.....
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999998876433321 1245678889999999987654433
No 21
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.08 E-value=6e-09 Score=98.50 Aligned_cols=254 Identities=14% Similarity=0.128 Sum_probs=144.5
Q ss_pred CCCCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
.....++|++..++.+..++. ..+.+.|+|++|+|||++|+.+++.....| ...+... ......+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~----~~~~~~~----~~~~~~~ 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI----KTTAAPM----IEKSGDL 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE----EEEEGGG----CCSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEecchh----ccchhHH
Confidence 345689999999999998886 335799999999999999999988864332 1222211 1111111
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCC------------------CCCCEEE
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRL------------------LPESRIL 219 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~------------------~~~~~ii 219 (429)
. ..+. . ..+..+|+||+++.. .....+...+... .++..+|
T Consensus 98 ~-~~~~-----------------~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 98 A-AILT-----------------N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp H-HHHH-----------------T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred H-HHHH-----------------h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1 1111 1 135679999999744 3333333322211 1234566
Q ss_pred EEeCChh-hhhhc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhc-----
Q 048064 220 ITTRNKQ-VLRNC--HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLF----- 291 (429)
Q Consensus 220 iTtR~~~-~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~----- 291 (429)
.+|.... +...+ .....+.+++++.++...++...+..... .-..+....+++.+.|+|-.+..+...+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 236 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADV 236 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 5555432 11111 23468999999999999999877643321 12245678888899999976655544321
Q ss_pred -C---CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhccc-CCcCHHHHHHHHHHcCCChhhhHH-HH
Q 048064 292 -E---RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFF-KGEDIYLVKKFFEASGFYPEIGIS-IL 365 (429)
Q Consensus 292 -~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~-~~~~~~~l~~~~~~~~~~~~~~l~-~L 365 (429)
. -+.......+.. +..+...++..++.++..++-.. ...+...+...++.+.......++ .|
T Consensus 237 ~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l 304 (338)
T 3pfi_A 237 NDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYL 304 (338)
T ss_dssp TTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHH
T ss_pred hcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHH
Confidence 0 112222222221 12223345555566666555542 235566666655322112222445 89
Q ss_pred HHcCceeEccCCeEEc
Q 048064 366 VDKALIAINSYNKITM 381 (429)
Q Consensus 366 ~~~sLi~~~~~~~~~m 381 (429)
++.++|.....|+...
T Consensus 305 ~~~gli~~~~~g~~~t 320 (338)
T 3pfi_A 305 LANGYIERTAKGRIAS 320 (338)
T ss_dssp HHTTSEEEETTEEEEC
T ss_pred HHcCceecCCCccccc
Confidence 9999999876666543
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.05 E-value=6.1e-10 Score=95.83 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=86.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhcCCHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKAGGLAF 158 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 158 (429)
.....++||+.+++++.+.+. ..+.+.|+|++|+|||++|+.+++.+.... ...++..++............
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE 98 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHH
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCcccc
Confidence 445779999999999999987 557899999999999999999999864321 123333333222110111111
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHh--cCCcEEEEecCCCCHH---------H-HHHHhccCCCCCCCCEEEEEeCChh
Q 048064 159 LQQKLLSEVLKDVNVIPHIDLNFRRL--SCRKVLIVLDDVTCLN---------Q-IESLVGSLDRLLPESRILITTRNKQ 226 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~~~~iiiTtR~~~ 226 (429)
.... +..+...+ .+++.+|||||++... . ...+...+. ..+..+|+||....
T Consensus 99 ~~~~--------------~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 99 FEER--------------LKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDE 162 (195)
T ss_dssp HHHH--------------HHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHH
T ss_pred HHHH--------------HHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHH
Confidence 1100 01111111 3467899999997542 1 222222221 23455677666543
Q ss_pred hh------hh-cCCCeEEEcCCCCHHHHHHHH
Q 048064 227 VL------RN-CHINQIYEMKGLGDDHALELF 251 (429)
Q Consensus 227 ~~------~~-~~~~~~~~l~~L~~~ea~~L~ 251 (429)
.. .. ......+.+++++.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 11 122346889999999887654
No 23
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.04 E-value=7.8e-09 Score=95.22 Aligned_cols=178 Identities=19% Similarity=0.254 Sum_probs=104.8
Q ss_pred CCCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ 151 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 151 (429)
.....++|.+..+++|.+.+. ..+.+.|+|++|+|||+||+.+++..... +...+......
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHHH
Confidence 445789999999999988763 45679999999999999999999886432 22222222111
Q ss_pred hcCC-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH----------------HHHHHHhccCC--CC
Q 048064 152 KAGG-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL----------------NQIESLVGSLD--RL 212 (429)
Q Consensus 152 ~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~--~~ 212 (429)
...+ .......+ +.......+.+|+|||++.. ..+..++..+. ..
T Consensus 90 ~~~~~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 KFIGEGASLVKDI----------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp CSTTHHHHHHHHH----------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred hccchHHHHHHHH----------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0111 11111111 11223346789999999654 12223332222 11
Q ss_pred CCCCEEEEEeCChhhhh-----hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHH
Q 048064 213 LPESRILITTRNKQVLR-----NCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKIL 286 (429)
Q Consensus 213 ~~~~~iiiTtR~~~~~~-----~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~ 286 (429)
..+..||.||.....+. .......+.+++++.++..+++...+........ .....++..+.| .|-.|..+
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHHH
Confidence 23556777777553322 1123357899999999999999887643322111 124667777777 56566554
Q ss_pred H
Q 048064 287 G 287 (429)
Q Consensus 287 ~ 287 (429)
.
T Consensus 231 ~ 231 (285)
T 3h4m_A 231 C 231 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=9.4e-09 Score=95.23 Aligned_cols=162 Identities=10% Similarity=0.050 Sum_probs=97.6
Q ss_pred CcccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhcCCHH
Q 048064 90 NELVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKAGGLA 157 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 157 (429)
..+.||+.++++|...|. .++.+.|+|++|+|||++++.+++.+.... ...+...++.. ..+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~----~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC----CC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc----cCCHH
Confidence 348899999999998876 677899999999999999999999875432 11222222222 34455
Q ss_pred HHHHHHHHHHhcCC-CCCCCHHH---HHHHh---cCCcEEEEecCCCCHH---HHHHHhccCCCCCCCCEEEEEeCChhh
Q 048064 158 FLQQKLLSEVLKDV-NVIPHIDL---NFRRL---SCRKVLIVLDDVTCLN---QIESLVGSLDRLLPESRILITTRNKQV 227 (429)
Q Consensus 158 ~~~~~l~~~~~~~~-~~~~~~~~---l~~~l---~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~~iiiTtR~~~~ 227 (429)
.+...++.++.... ........ +...+ .+++++++||+++... .+..+............||.++.+.+.
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 66667777775442 12222333 33332 4567999999998653 222232211111112233334433211
Q ss_pred ----h-----hhcCCCeEEEcCCCCHHHHHHHHHHhhh
Q 048064 228 ----L-----RNCHINQIYEMKGLGDDHALELFIRHAF 256 (429)
Q Consensus 228 ----~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~ 256 (429)
+ ..+ ....+.++|++.+|..+++..++.
T Consensus 176 ~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 122 125789999999999999988873
No 25
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.01 E-value=8e-10 Score=98.95 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=102.6
Q ss_pred CCCcccchh---hHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHH
Q 048064 88 SKNELVGVE---SRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQK 162 (429)
Q Consensus 88 ~~~~~vGR~---~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (429)
....|+|.. ..++.+..+.. ..+.+.|+|++|+||||||+.+++..........++. ...... ...
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~---~~~----- 96 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHAS---IST----- 96 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGG---SCG-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH---HHH-----
Confidence 346788743 55666666665 5789999999999999999999998765533344443 222111 000
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--H--HHHHhccCCCC-CCCC-EEEEEeCChh---------h
Q 048064 163 LLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--Q--IESLVGSLDRL-LPES-RILITTRNKQ---------V 227 (429)
Q Consensus 163 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~--~~~l~~~l~~~-~~~~-~iiiTtR~~~---------~ 227 (429)
.....+ .++.+|||||++... . .+.+...+... ..+. ++|+||+... +
T Consensus 97 ----------------~~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 97 ----------------ALLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp ----------------GGGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred ----------------HHHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 000011 245699999996432 1 22333222111 1222 4777776431 1
Q ss_pred hhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 228 LRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 228 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
...+.....+.+++++.++..+++...+...... -..+....+++.++|++..+..+..
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1111123689999999999999998876432211 1245678899999999887765544
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=1.1e-08 Score=97.15 Aligned_cols=193 Identities=12% Similarity=0.155 Sum_probs=112.9
Q ss_pred CCCCcccchhhHHHHHHHhhcC--CCEEEEEcCCCcchHHHHHHHHHHhhcC--cceeEEEeechhhhhhcCCHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLGA--APLLGIWGIGGIGKTTIARVIFNRISRN--FKGSCFLENIREESQKAGGLAFLQQK 162 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (429)
.....++|++..++.+..++.. .+.+.|+|++|+||||+|+.+++.+... +...+...+... ..+...+..
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~- 108 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD----ERGISIVRE- 108 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS----CCCHHHHTT-
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc----ccchHHHHH-
Confidence 4457899999999999999982 2459999999999999999999876421 221222122211 112222211
Q ss_pred HHHHHhcC-CCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCChh-hhhhc-CCCeEE
Q 048064 163 LLSEVLKD-VNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNKQ-VLRNC-HINQIY 237 (429)
Q Consensus 163 l~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~~-~~~~~~ 237 (429)
........ ....... .....-...+-+|++|+++.. .....+...+.......++|++|.... +.+.+ .....+
T Consensus 109 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHHHHHSCCCCCCTT-HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HHHHHhhhcccccchh-hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 11111111 0000000 000111235579999999743 344555554444345667777665442 21211 123578
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 238 EMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 238 ~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
.+.+++.++...++...+...... -..+..+.+++.++|+|..+..+.
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999998876433221 124568889999999998765443
No 27
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.4e-08 Score=101.59 Aligned_cols=187 Identities=15% Similarity=0.230 Sum_probs=105.8
Q ss_pred CCCCcccchhhHHHHHHHhhcC-------------------CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeech
Q 048064 87 DSKNELVGVESRVEEIQSLLGA-------------------APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIR 147 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~~-------------------~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 147 (429)
....+++|++..+++|.+++.. .+.+.|+|++|+||||+|+.+++.+. ..+...+..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~~~i~in~s 111 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----YDILEQNAS 111 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----CEEEEECTT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----CCEEEEeCC
Confidence 3446899999999999998862 37899999999999999999999872 222222222
Q ss_pred hhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHH--HhcCCcEEEEecCCCCHH-----HHHHHhccCCCCCCCCEEEE
Q 048064 148 EESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFR--RLSCRKVLIVLDDVTCLN-----QIESLVGSLDRLLPESRILI 220 (429)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~--~l~~~~~LlVlDdv~~~~-----~~~~l~~~l~~~~~~~~iii 220 (429)
. ..... .....+.................. ...+++.+||||+++... .+..+...+.. .+..||+
T Consensus 112 ~----~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIl 184 (516)
T 1sxj_A 112 D----VRSKT-LLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLIL 184 (516)
T ss_dssp S----CCCHH-HHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEE
T ss_pred C----cchHH-HHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEE
Confidence 1 11111 111111111111000000000000 123567899999996431 12333332221 2334555
Q ss_pred EeCChh---hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 221 TTRNKQ---VLRNCHINQIYEMKGLGDDHALELFIRHAFRQN-LVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 221 TtR~~~---~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
++.+.. +.........+.+++++.++..+++...+.... ..+ .+....|++.++|.+-.+..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 444321 222223456799999999999999987664332 122 2357789999999766544443
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.97 E-value=6.8e-08 Score=91.90 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=116.5
Q ss_pred chHHHHHHHhhhhhccCCccccCCCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHH
Q 048064 64 NESELIKKVVNDILEKLPKVVPCDSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVI 129 (429)
Q Consensus 64 ~e~~~i~~i~~~~~~~~~~~~p~~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~ 129 (429)
.+...++.+..++....+ + .....++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+
T Consensus 62 ~~~~~~~~i~~~i~~~~~---~-~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHGP---P-VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SCHHHHHHHHHHTBCCSC---C-CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred CChHHHHHHHhhcccCCC---C-CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 355666666666554432 2 445689999999999988763 4678999999999999999999
Q ss_pred HHHhhcCcceeEEEeechhhhhhcCC-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH---------
Q 048064 130 FNRISRNFKGSCFLENIREESQKAGG-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--------- 199 (429)
Q Consensus 130 ~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------- 199 (429)
++.... .++..+.........+ .....+.+. .......+.+|+||+++..
T Consensus 138 a~~~~~----~~~~i~~~~l~~~~~g~~~~~~~~~~----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 138 ASQSGA----TFFSISASSLTSKWVGEGEKMVRALF----------------AVARCQQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp HHHTTC----EEEEEEGGGGCCSSTTHHHHHHHHHH----------------HHHHHTCSEEEEEETHHHHTBC------
T ss_pred HHHcCC----eEEEEehHHhhccccchHHHHHHHHH----------------HHHHhcCCeEEEEeCchhhhccCCCCcc
Confidence 987632 2223333222110111 111111111 1122346789999999533
Q ss_pred ----HHHHHHhccCCC----CCCCCEEEEEeCChhhh-hh--cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHH
Q 048064 200 ----NQIESLVGSLDR----LLPESRILITTRNKQVL-RN--CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKEL 268 (429)
Q Consensus 200 ----~~~~~l~~~l~~----~~~~~~iiiTtR~~~~~-~~--~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~ 268 (429)
.....++..+.. ...+..||.||.....+ .. -.....+.++..+.++..+++...+...... -..+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~ 275 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEE 275 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHH
Confidence 112333333221 12344455566543221 11 1234578899999999999988776332211 11345
Q ss_pred HHHHHHHhCC-ChHHHHHHHHh
Q 048064 269 SDKVINYAQG-VPLALKILGCY 289 (429)
Q Consensus 269 ~~~i~~~~~G-~PLai~~~~~~ 289 (429)
...+++.+.| .+..|..++..
T Consensus 276 l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 276 IEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 7788889988 56667666553
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.96 E-value=4.2e-08 Score=88.97 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=100.6
Q ss_pred CCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 88 SKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
...+++|.+..++.+.+++. ..+.+.|+|++|+|||++|+.+++.....| +..+........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMAGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEechHHHHhhc
Confidence 34678898888888876553 345689999999999999999999764322 222222111100
Q ss_pred CCH-HHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-----------------HHHHHhccCCCC--C
Q 048064 154 GGL-AFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-----------------QIESLVGSLDRL--L 213 (429)
Q Consensus 154 ~~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~l~~~l~~~--~ 213 (429)
.+. ......+ +.......+.+|+|||++... .+..++..+... .
T Consensus 80 ~~~~~~~~~~~----------------~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 80 GGLGAARVRSL----------------FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp TTHHHHHHHHH----------------HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred cChhHHHHHHH----------------HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 000 0111111 122223457899999998641 123333322221 2
Q ss_pred CCCEEEEEeCChhhhh-hc----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHHH
Q 048064 214 PESRILITTRNKQVLR-NC----HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKILG 287 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~ 287 (429)
.+..||.||.....+. .+ .....+.+++.+.++..+++...+...... .........++..+.|.+- .|..+.
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 3445666776543221 11 234678899999999999998876433222 1222234677888887654 555544
Q ss_pred H
Q 048064 288 C 288 (429)
Q Consensus 288 ~ 288 (429)
.
T Consensus 223 ~ 223 (262)
T 2qz4_A 223 N 223 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.93 E-value=6.7e-08 Score=91.82 Aligned_cols=178 Identities=15% Similarity=0.096 Sum_probs=104.9
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
.....++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++..... ++..+.......
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~~ 123 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK 123 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhhh
Confidence 445789999999999988762 24569999999999999999999987422 222222211110
Q ss_pred c-CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------------HHHHHhccCC---CCCCC
Q 048064 153 A-GGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------------QIESLVGSLD---RLLPE 215 (429)
Q Consensus 153 ~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~~~ 215 (429)
. .......+.+ +.......+.+|+||+++... ....++..+. ....+
T Consensus 124 ~~g~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 124 WMGESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp C---CHHHHHHH----------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred hcchHHHHHHHH----------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0001111111 111223467899999997432 1233333222 11334
Q ss_pred CEEEEEeCChh-----hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 048064 216 SRILITTRNKQ-----VLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILGC 288 (429)
Q Consensus 216 ~~iiiTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~~~ 288 (429)
..||.||.... +.. .....+.++..+.++..+++..++....... .......|++.+.| .+-.|..++.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55565665442 222 3456788999999999999988764332111 13456788889988 5656666554
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.91 E-value=7.6e-08 Score=90.24 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=106.9
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
..-..++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++..... ++..+.......
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~ 90 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSK 90 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHTT
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhhc
Confidence 445789999999999998772 34679999999999999999999986432 222222221110
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------------HHHHHhccCC---CCCCC
Q 048064 153 -AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------------QIESLVGSLD---RLLPE 215 (429)
Q Consensus 153 -~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~~~ 215 (429)
........+.+. .......+.+|+||+++... ....++..+. ....+
T Consensus 91 ~~g~~~~~~~~~f----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 91 WMGESEKLVKQLF----------------AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp TGGGHHHHHHHHH----------------HHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred ccchHHHHHHHHH----------------HHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 011111111111 11223467899999997431 1233332222 22345
Q ss_pred CEEEEEeCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 048064 216 SRILITTRNKQVLRN---CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILGC 288 (429)
Q Consensus 216 ~~iiiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~~~ 288 (429)
..||.||.....+.. -.....+.++..+.++-.+++...+....... .......+++.+.| .+-.|..+..
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556667765432111 02346788999999999999988774332211 13456778888887 5656655544
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.91 E-value=5.3e-08 Score=90.14 Aligned_cols=178 Identities=18% Similarity=0.140 Sum_probs=103.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
.....++|.+..++.|.+.+. ..+.+.|+|++|+|||++|+.++...... ++..+.......
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~----~~~i~~~~l~~~ 93 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT----FLNISAASLTSK 93 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE----EEEEESTTTSSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC----eEEeeHHHHhhc
Confidence 455789999999999988763 35789999999999999999999876422 222222211110
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH-------------HHHHHHhccC---CCC--C
Q 048064 153 -AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL-------------NQIESLVGSL---DRL--L 213 (429)
Q Consensus 153 -~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l---~~~--~ 213 (429)
........+.+. .......+.+|+||+++.. .....++..+ ... +
T Consensus 94 ~~~~~~~~~~~~~----------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 94 YVGDGEKLVRALF----------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp SCSCHHHHHHHHH----------------HHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred ccchHHHHHHHHH----------------HHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 011111111111 1122346789999999643 1112222222 111 1
Q ss_pred CCCEEEEEeCChh-----hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHHH
Q 048064 214 PESRILITTRNKQ-----VLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKILG 287 (429)
Q Consensus 214 ~~~~iiiTtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~ 287 (429)
.+..||.||.... +.. .....+.++..+.++...++...+...... -..+....+++.+.|++- .|..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2345666776542 222 234567888888888888887765332211 113457788889998875 555554
Q ss_pred H
Q 048064 288 C 288 (429)
Q Consensus 288 ~ 288 (429)
.
T Consensus 234 ~ 234 (297)
T 3b9p_A 234 K 234 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.90 E-value=3.4e-08 Score=94.40 Aligned_cols=195 Identities=11% Similarity=0.007 Sum_probs=107.6
Q ss_pred CCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 89 KNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
...|+|++..++.+..+.. ..+.+.|+|++|+|||++|+.+++.+....+.. ..+................
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT--AIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE--EEEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc--cccchhhhhcccchhHHHH
Confidence 5689999999877555443 335899999999999999999999886433221 1111111111222222222
Q ss_pred HHHHHHhcC---------------------C----CCCCC-----HHHHHHH---------hcCC----cEEEEecCCCC
Q 048064 162 KLLSEVLKD---------------------V----NVIPH-----IDLNFRR---------LSCR----KVLIVLDDVTC 198 (429)
Q Consensus 162 ~l~~~~~~~---------------------~----~~~~~-----~~~l~~~---------l~~~----~~LlVlDdv~~ 198 (429)
..+...... . ..... ...+... ..++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222211000 0 00000 1111111 1122 45999999974
Q ss_pred H--HHHHHHhccCCCCCCCCEEEEEeCC------------h-hhhh-hcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 048064 199 L--NQIESLVGSLDRLLPESRILITTRN------------K-QVLR-NCHINQIYEMKGLGDDHALELFIRHAFRQNLVD 262 (429)
Q Consensus 199 ~--~~~~~l~~~l~~~~~~~~iiiTtR~------------~-~~~~-~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 262 (429)
. .....+...+...... .++++|.. . .+.+ .......+.+++++.++..+++...+......
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~- 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE- 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC-
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 4 4455566555543333 34444431 1 1111 11223458999999999999998876443221
Q ss_pred hhHHHHHHHHHHHhC-CChHHHHHHHH
Q 048064 263 VDYKELSDKVINYAQ-GVPLALKILGC 288 (429)
Q Consensus 263 ~~~~~~~~~i~~~~~-G~PLai~~~~~ 288 (429)
-..+....+++.+. |+|..+..+..
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 22456788999998 89877665544
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.90 E-value=1.4e-08 Score=99.40 Aligned_cols=181 Identities=13% Similarity=0.139 Sum_probs=106.0
Q ss_pred CCccc-chhhHH--HHHHHhhc--C-CCEEEEEcCCCcchHHHHHHHHHHhhcCcce-eEEEeechhhhhhcCCHHHHHH
Q 048064 89 KNELV-GVESRV--EEIQSLLG--A-APLLGIWGIGGIGKTTIARVIFNRISRNFKG-SCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 89 ~~~~v-GR~~~~--~~l~~~l~--~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
...|+ |....+ ..+..... + ...+.|+|++|+||||||+.+++.+...++. .+.+.+... +..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----------~~~ 173 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----------FLN 173 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----------HHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----------HHH
Confidence 34566 655443 23333333 2 5689999999999999999999987655432 222222211 122
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----HHHHHhccCCC-CCCCCEEEEEeCCh---------hh
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----QIESLVGSLDR-LLPESRILITTRNK---------QV 227 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~---------~~ 227 (429)
.+...+... ....+...+...+-+|+|||++... ..+.+...+.. ...+..||+||... .+
T Consensus 174 ~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 174 DLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 232222211 2333444555466799999996332 23333333211 13467788888753 12
Q ss_pred hhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCChHHHHHHH
Q 048064 228 LRNCHINQIYEMKGLGDDHALELFIRHAFRQN-LVDVDYKELSDKVINYAQGVPLALKILG 287 (429)
Q Consensus 228 ~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~PLai~~~~ 287 (429)
...+.....+.+++++.++..+++...+.... ..+ .+....|+..++|++--+..+.
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 22233335788999999999999988764322 122 2456788899999997665443
No 35
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=3e-08 Score=94.24 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=110.2
Q ss_pred CCCCcccchhhHHHHHHHhh-c--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe-------------------
Q 048064 87 DSKNELVGVESRVEEIQSLL-G--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE------------------- 144 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l-~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~------------------- 144 (429)
.....++|.+..++.+.+++ . ..+.+.|+|++|+||||+++.++..+.......+.+.
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 90 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 90 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEEC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecc
Confidence 34467999999999999998 5 2333999999999999999999986532211111110
Q ss_pred ----echhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEE
Q 048064 145 ----NIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRI 218 (429)
Q Consensus 145 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~i 218 (429)
............ ...+..+..+.......... .+ ..+.+++-++|||+++.. ...+.+...+....++..+
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 91 PYHLEITPSDMGNNDR-IVIQELLKEVAQMEQVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp SSEEEECCC----CCH-HHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEE
T ss_pred cceEEecHhhcCCcch-HHHHHHHHHHHHhccccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEE
Confidence 000000000000 01222222221110000000 00 002346779999999854 3345555554444456777
Q ss_pred EEEeCCh-hhhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhH-HHHHHHHHHHhCCChHHHHHHHH
Q 048064 219 LITTRNK-QVLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDY-KELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 219 iiTtR~~-~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~-~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
|++|.+. .+.+. ......+++.+++.++..+++...+...... -. .+.+..+++.++|.+..+..+..
T Consensus 168 Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 168 IMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7777653 22222 1234789999999999999998876432211 11 24578899999999977655443
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.86 E-value=1.1e-07 Score=86.86 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=91.3
Q ss_pred CCcccchhhHHHHHHHh-------hc-----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCH
Q 048064 89 KNELVGVESRVEEIQSL-------LG-----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGL 156 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~-------l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 156 (429)
...++|....++.+... +. ..+.+.|+|++|+|||+||+.+++.....| +.+ +...... ....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i-~~~~~~~-g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKI-CSPDKMI-GFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEE-ECGGGCT-TCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEE-eCHHHhc-CCch
Confidence 34678887776666652 21 456799999999999999999999753221 112 1211000 0011
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH------------HHHHHHhccCCC---CCCCCEEEEE
Q 048064 157 AFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL------------NQIESLVGSLDR---LLPESRILIT 221 (429)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~~l~~~l~~---~~~~~~iiiT 221 (429)
......+ .. .+.......+.+|+|||++.. ..++.+...+.. ......||.|
T Consensus 107 ~~~~~~~-~~------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 107 TAKCQAM-KK------------IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp HHHHHHH-HH------------HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred HHHHHHH-HH------------HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 1100000 00 011222356789999998653 123333333332 2223446667
Q ss_pred eCChhhhhhc----CCCeEEEcCCCCH-HHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC
Q 048064 222 TRNKQVLRNC----HINQIYEMKGLGD-DHALELFIRHAFRQNLVDVDYKELSDKVINYAQG 278 (429)
Q Consensus 222 tR~~~~~~~~----~~~~~~~l~~L~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G 278 (429)
|.....+... .....+.+++++. ++...++.... . .. .+....+++.+.|
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-FK---DKERTTIAQQVKG 228 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-SC---HHHHHHHHHHHTT
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-CC---HHHHHHHHHHhcC
Confidence 7776544431 1246789999998 66666665431 1 11 3457788888888
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.86 E-value=2.7e-08 Score=97.18 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=106.9
Q ss_pred CCCCcccchhhHH---HHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 87 DSKNELVGVESRV---EEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 87 ~~~~~~vGR~~~~---~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
.....++|.+..+ ..|...+. ..+.+.|+|++|+||||||+.+++.....|. ..+.. ..+...+.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a~-----~~~~~~ir- 92 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE----RISAV-----TSGVKEIR- 92 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEETT-----TCCHHHHH-
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEec-----cCCHHHHH-
Confidence 4457899999998 77777776 5567999999999999999999998743332 11111 12222211
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH--HHHHHhccCCCCCCCCEEEE-EeCChh--hh-hhcCCCe
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN--QIESLVGSLDRLLPESRILI-TTRNKQ--VL-RNCHINQ 235 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~~iii-TtR~~~--~~-~~~~~~~ 235 (429)
.++.... .....+++.+|+||+++... +.+.|+..+.. ....+|. ||.+.. +. .......
T Consensus 93 ~~~~~a~------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~ 158 (447)
T 3pvs_A 93 EAIERAR------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRAR 158 (447)
T ss_dssp HHHHHHH------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEE
T ss_pred HHHHHHH------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCcee
Confidence 1111110 01123567899999998553 44445554442 2234444 554442 11 1123346
Q ss_pred EEEcCCCCHHHHHHHHHHhhhcCC-----CCChhHHHHHHHHHHHhCCChHHHHHHHH
Q 048064 236 IYEMKGLGDDHALELFIRHAFRQN-----LVDVDYKELSDKVINYAQGVPLALKILGC 288 (429)
Q Consensus 236 ~~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~PLai~~~~~ 288 (429)
++.+.+++.++...++...+.... ....-..+..+.+++.++|++..+..+..
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 788999999999999988764311 11112346778899999999976655443
No 38
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.85 E-value=1.2e-07 Score=92.79 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=108.0
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
.....++|.+...+.|.+.+. ..+.+.|+|++|+|||+||+.+++.... ..++..+.....
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~l~-- 205 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLV-- 205 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC-----
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHHHH--
Confidence 455789999999999988762 3578999999999999999999998621 122222221100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH-------------HHHHHHhccCCCC---CCC
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL-------------NQIESLVGSLDRL---LPE 215 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~---~~~ 215 (429)
.... ......+..+.... ...+.+|+||+++.. .....++..+... ..+
T Consensus 206 ------------~~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 206 ------------SKWL--GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ------------hhhc--chHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 0000 01112233333322 356789999999854 2234455544432 344
Q ss_pred CEEEEEeCChhhhhh---cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHHHH
Q 048064 216 SRILITTRNKQVLRN---CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKILGC 288 (429)
Q Consensus 216 ~~iiiTtR~~~~~~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~~~ 288 (429)
..||.||..+..+.. -.....+.++..+.++...++..++...... ........|++.+.| .+-.|..++.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 556667765432111 1334678899999999999998876332211 113456788888888 4556665544
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.85 E-value=1.6e-07 Score=87.98 Aligned_cols=182 Identities=13% Similarity=0.082 Sum_probs=104.2
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
..-.+++|.+..++.|.+.+. ..+.+.|+|++|+|||+||+.+++.... ..++..+.......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh
Confidence 344678899888888877652 3478999999999999999999998621 12222222111000
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------------HHHHHhccCCC---CCCC
Q 048064 153 -AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------------QIESLVGSLDR---LLPE 215 (429)
Q Consensus 153 -~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~---~~~~ 215 (429)
........+.+.. .....++.+|+||+++... ....++..+.. ...+
T Consensus 86 ~~g~~~~~~~~lf~----------------~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 86 WLGESEKLVKNLFQ----------------LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCCSCHHHHHHHHH----------------HHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred hhhHHHHHHHHHHH----------------HHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0011111111111 1223467899999997541 12333332221 1234
Q ss_pred CEEEEEeCChhhhh-hc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHHHHh
Q 048064 216 SRILITTRNKQVLR-NC--HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKILGCY 289 (429)
Q Consensus 216 ~~iiiTtR~~~~~~-~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~~~ 289 (429)
..||.||.....+. .+ .....+.++..+.++..+++..++....... .......+++.+.|. +-.|..++..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45555665442211 10 3446788999999999999988763322111 134567888888886 5556665543
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.85 E-value=6.1e-08 Score=90.26 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=88.2
Q ss_pred cccchhhHHHHHHHhhc-----------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---eeEEEeechhhh
Q 048064 91 ELVGVESRVEEIQSLLG-----------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---GSCFLENIREES 150 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~-----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~ 150 (429)
.++|.+..++.|.+.+. ....+.|+|++|+|||++|+.+++.+..... ..+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 58888888888876543 3346999999999999999999987654321 122222222111
Q ss_pred hhcC-CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCC-----------CHHHHHHHhccCCCCCCCCEE
Q 048064 151 QKAG-GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVT-----------CLNQIESLVGSLDRLLPESRI 218 (429)
Q Consensus 151 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~~~~i 218 (429)
.... ........ +.... ++-+|+||+++ .......|+..+.....+..|
T Consensus 112 ~~~~g~~~~~~~~-----------------~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 112 GQYIGHTAPKTKE-----------------VLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp CSSTTCHHHHHHH-----------------HHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred hhcccccHHHHHH-----------------HHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 0000 01111111 11111 24599999998 334455566555544556777
Q ss_pred EEEeCChh----------hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhc
Q 048064 219 LITTRNKQ----------VLRNCHINQIYEMKGLGDDHALELFIRHAFR 257 (429)
Q Consensus 219 iiTtR~~~----------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 257 (429)
|+||.... +... ....+.+++++.++..+++...+..
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 77776432 1122 2367899999999999999887643
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.81 E-value=2.5e-07 Score=89.14 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=102.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
.....++|.+..++.|.+++. ..+.+.|+|++|+|||+||+.+++.... .++..++......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhcc
Confidence 455789999999999998872 3578999999999999999999887532 2222222211100
Q ss_pred cC-CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH-------------HHHHHHhccCC---C-CCC
Q 048064 153 AG-GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL-------------NQIESLVGSLD---R-LLP 214 (429)
Q Consensus 153 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~---~-~~~ 214 (429)
.. ........+ +.......+.+|+||+++.. .....++..+. . ...
T Consensus 188 ~~g~~~~~~~~~----------------~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 188 YVGEGEKLVRAL----------------FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp ----CHHHHHHH----------------HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred ccchHHHHHHHH----------------HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 001111111 11112335679999999744 11122222221 1 122
Q ss_pred CCEEEEEeCChhhhh-h-c-CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChH-HHHHHHH
Q 048064 215 ESRILITTRNKQVLR-N-C-HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPL-ALKILGC 288 (429)
Q Consensus 215 ~~~iiiTtR~~~~~~-~-~-~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PL-ai~~~~~ 288 (429)
...||.||.....+. . . .....+.++..+.++..+++...+...... -..+....+++.+.|..- .|..+..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344555665432211 1 1 234568899999999999998776432221 113457788888888544 6655543
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.80 E-value=2.3e-07 Score=86.96 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=99.6
Q ss_pred CCCccc-chhhH--HHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHH
Q 048064 88 SKNELV-GVESR--VEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQ 160 (429)
Q Consensus 88 ~~~~~v-GR~~~--~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
..+.|+ |.... ...+..+.. ....+.|+|++|+||||||+.+++.+...-...+++. ... +.
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~----------~~ 77 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADD----------FA 77 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHH----------HH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHH----------HH
Confidence 345565 54433 333444443 2368999999999999999999998754422233332 221 11
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----HHHHHhccCCC-CCCCCEEEEEeCCh---------h
Q 048064 161 QKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----QIESLVGSLDR-LLPESRILITTRNK---------Q 226 (429)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~---------~ 226 (429)
..+...+.. .....+...+. ++.+|+|||++... ..+.+...+.. ...+..||+||... .
T Consensus 78 ~~~~~~~~~-----~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~ 151 (324)
T 1l8q_A 78 QAMVEHLKK-----GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDR 151 (324)
T ss_dssp HHHHHHHHH-----TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHH
T ss_pred HHHHHHHHc-----CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhH
Confidence 122222211 11223333333 35699999996432 22233322211 12456788877543 1
Q ss_pred hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 227 VLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 227 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
+...+.....+.+++ +.++..+++...+...... -..+....+++.+ |++-.+..+
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~l~~~ 207 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVREIEGK 207 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHHHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHHHHHH
Confidence 122222346799999 9999999998877433221 1245678888888 887655443
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.80 E-value=1.3e-07 Score=88.79 Aligned_cols=177 Identities=13% Similarity=0.150 Sum_probs=105.0
Q ss_pred CCCCcccchhhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHH
Q 048064 87 DSKNELVGVESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKL 163 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l 163 (429)
....+++|.+..++.+.+++. ..+.+.++|++|+|||++|+.+++.+. ..+...+.. ......+ +..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~----~~~~~i~~~-----~~~~~~i-~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN----ADMMFVNGS-----DCKIDFV-RGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT----EEEEEEETT-----TCCHHHH-HTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC----CCEEEEccc-----ccCHHHH-HHH
Confidence 445789999999999999987 346788899999999999999998873 222222221 1222222 222
Q ss_pred HHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH---HHHHHhccCCCCCCCCEEEEEeCChhh-hhh-cCCCeEEE
Q 048064 164 LSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN---QIESLVGSLDRLLPESRILITTRNKQV-LRN-CHINQIYE 238 (429)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~~iiiTtR~~~~-~~~-~~~~~~~~ 238 (429)
+........ ..+++.+|||||++... ..+.+...+.....+..+|+||....- .+. ......++
T Consensus 93 ~~~~~~~~~-----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~ 161 (324)
T 3u61_B 93 LTNFASAAS-----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVIT 161 (324)
T ss_dssp HHHHHHBCC-----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEE
T ss_pred HHHHHhhcc-----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEE
Confidence 221111100 12367899999998654 445555544433456778887765431 111 11235799
Q ss_pred cCCCCHHHHHHHH-------HHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHH
Q 048064 239 MKGLGDDHALELF-------IRHAFRQNLVDVDYKELSDKVINYAQGVPLALKI 285 (429)
Q Consensus 239 l~~L~~~ea~~L~-------~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~ 285 (429)
+++++.++-.+++ ...+...... ....+....+++.++|++..+..
T Consensus 162 ~~~~~~~e~~~il~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 162 FGQPTDEDKIEMMKQMIRRLTEICKHEGIA-IADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHTCC-BSCHHHHHHHHHHTCSCTTHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHhCCCCHHHHHH
Confidence 9999988854332 2222211111 11125677888999998765443
No 44
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.75 E-value=4.8e-07 Score=85.17 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=102.8
Q ss_pred hhHHHHHHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc---------------------eeEEEeechhhhh
Q 048064 96 ESRVEEIQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNFK---------------------GSCFLENIREESQ 151 (429)
Q Consensus 96 ~~~~~~l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~~~~~~ 151 (429)
+...+.+...+. -.+.+.++|++|+|||++|+.+++.+..... ...++. .... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~-~ 85 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKG-K 85 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTT-C
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-cccc-C
Confidence 445666666665 3457999999999999999999997643221 111111 0000 0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-----cCCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCC
Q 048064 152 KAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-----SCRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRN 224 (429)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~ 224 (429)
....... +..+.+.+ .+++-++|+|+++. ....+.++..+....++..+|++|.+
T Consensus 86 ~~~~i~~------------------ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 86 NTLGVDA------------------VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp SSBCHHH------------------HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred CCCCHHH------------------HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 0011111 11122222 24567999999984 45567777777765667777777665
Q ss_pred hh-hhhh-cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 225 KQ-VLRN-CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 225 ~~-~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
.. +.+. .+....+++.+++.++..+++.... ..+ .+.+..+++.++|.|..+..+
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 53 3322 2345689999999999999998775 111 345678999999999876544
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.70 E-value=2.3e-07 Score=79.12 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=42.8
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.....++||+.+++.+.+.+. ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999987 5678899999999999999999998754
No 46
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.68 E-value=4e-07 Score=86.54 Aligned_cols=168 Identities=20% Similarity=0.275 Sum_probs=100.7
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
-.++.|-+...++|.+.+. .++-+.++||||+|||.||+++++.....| +...........
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccc
Confidence 3568899999999888664 467899999999999999999999875433 222222221111
Q ss_pred C-CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--CC
Q 048064 154 G-GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--LP 214 (429)
Q Consensus 154 ~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~ 214 (429)
. ......+.++.. .-...+.+|+||++|... .+..++..+..+ ..
T Consensus 223 vGese~~vr~lF~~----------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 223 IGEGSRMVRELFVM----------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp TTHHHHHHHHHHHH----------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred cchHHHHHHHHHHH----------------HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 1 112222222221 223468999999996331 123344333322 23
Q ss_pred CCEEEEEeCChhh-----hhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCCh
Q 048064 215 ESRILITTRNKQV-----LRNCHINQIYEMKGLGDDHALELFIRHAFRQNLV-DVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 215 ~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~P 280 (429)
+..||.||..++. ...-.....+.++..+.++-.++|..+...-... ..+ ...+++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 3445556655432 2222456788999999999999998776332211 112 466778887754
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.65 E-value=7.7e-07 Score=82.47 Aligned_cols=172 Identities=16% Similarity=0.221 Sum_probs=99.8
Q ss_pred CCCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ 151 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 151 (429)
.....++|.+..+++|.+.+. ..+.+.|+|++|+|||+||+.+++..... ++..+...
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~~~~--- 84 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGPE--- 84 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEECHHH---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEEhHH---
Confidence 344679999998888887653 45679999999999999999999876422 22221111
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCHHHH-HHHhcCCcEEEEecCCCCHHH----------------HHHHhccCCCC--
Q 048064 152 KAGGLAFLQQKLLSEVLKDVNVIPHIDLN-FRRLSCRKVLIVLDDVTCLNQ----------------IESLVGSLDRL-- 212 (429)
Q Consensus 152 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~~----------------~~~l~~~l~~~-- 212 (429)
+. ...... ....+..+ .......+.+|+||+++.... ...++..+...
T Consensus 85 -------l~----~~~~g~--~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 85 -------LL----TMWFGE--SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp -------HH----HHHHTT--CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred -------HH----hhhcCc--hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 11 111111 11112222 223345678999999975321 23333333211
Q ss_pred CCCCEEEEEeCChhhhh-h-c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCC-ChhHHHHHHHHHHHhCCChHH
Q 048064 213 LPESRILITTRNKQVLR-N-C---HINQIYEMKGLGDDHALELFIRHAFRQNLV-DVDYKELSDKVINYAQGVPLA 282 (429)
Q Consensus 213 ~~~~~iiiTtR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~~~~i~~~~~G~PLa 282 (429)
..+..||.||.....+. . . .....+.++..+.++-.+++...+...... ... ...++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 23455666776553221 1 1 234678999999999999987766332211 111 34566667777654
No 48
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.65 E-value=3.1e-07 Score=86.79 Aligned_cols=181 Identities=13% Similarity=0.208 Sum_probs=107.3
Q ss_pred CCcccchhhHHHHHHHhhcCCCE--EEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHHHH
Q 048064 89 KNELVGVESRVEEIQSLLGAAPL--LGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKLLS 165 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~~~~~--v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (429)
-..++|.+..++.|...+...++ +.++|++|+||||+|+.++..+... +...+.-.+... ..+...+. ....
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~----~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD----DRGIDVVR-NQIK 98 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS----CCSHHHHH-THHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc----cccHHHHH-HHHH
Confidence 35688999999999888873333 9999999999999999999986432 211111111111 11222221 1111
Q ss_pred HHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCChh-hhhh-cCCCeEEEcCC
Q 048064 166 EVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNKQ-VLRN-CHINQIYEMKG 241 (429)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~-~~~~-~~~~~~~~l~~ 241 (429)
........ +.+.+-++|+|+++.. ...+.+...+........+|++|.... +.+. ......+.+.+
T Consensus 99 ~~~~~~~~----------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~ 168 (340)
T 1sxj_C 99 DFASTRQI----------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQP 168 (340)
T ss_dssp HHHHBCCS----------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred HHHhhccc----------CCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccC
Confidence 11111000 1234679999999743 444555555444445667777665432 2211 12345789999
Q ss_pred CCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 242 LGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 242 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
++.++..+.+...+-..... -..+....+++.++|.+--+..+
T Consensus 169 l~~~~~~~~l~~~~~~~~~~--i~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 169 LPQEAIERRIANVLVHEKLK--LSPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp CCHHHHHHHHHHHHHTTTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999887765322211 11356788999999998754433
No 49
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.60 E-value=3.2e-06 Score=79.46 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=133.8
Q ss_pred CCcccchhhHHHHHHHhhc-------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHH
Q 048064 89 KNELVGVESRVEEIQSLLG-------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQ 161 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 161 (429)
-..++|.+..++.+...+. ....++|+|++|+||||||+.++..+...+. ..... . ......+.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~sg~-~---~~~~~~l~- 94 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTSGP-V---LVKQGDMA- 94 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEETT-T---CCSHHHHH-
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEech-H---hcCHHHHH-
Confidence 3568898888888777664 2367999999999999999999998743321 11110 0 00111110
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCC--------C----------CCCEEEE-
Q 048064 162 KLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRL--------L----------PESRILI- 220 (429)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~--------~----------~~~~iii- 220 (429)
. +...+ .++-++++|+++.. ...+.+...+... + +...++-
T Consensus 95 ~-----------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a 156 (334)
T 1in4_A 95 A-----------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 156 (334)
T ss_dssp H-----------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred H-----------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe
Confidence 0 11111 13457788988643 2222222211110 0 1122332
Q ss_pred EeCChhhhhhc--CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCChHHHHHHHHhhc------C
Q 048064 221 TTRNKQVLRNC--HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVPLALKILGCYLF------E 292 (429)
Q Consensus 221 TtR~~~~~~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~------~ 292 (429)
|++...+...+ .......+++++.++..+++.+.+...... -..+.+..|++.+.|.|-.+..+...+. +
T Consensus 157 t~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~ 234 (334)
T 1in4_A 157 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVK 234 (334)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 44433222111 223468899999999999998876332211 2246688899999999976654433221 0
Q ss_pred ---CCHHHHHHHHHHHhhCCCccHHHHHHHhhhcCChhhHHHHhhhhccc--CCcCHHHHHHHHHHcCCChhhhHH-HHH
Q 048064 293 ---RKKEVWENAIKKLKNFLHQNILDVLKISYDDLDNDEKNIFLDVACFF--KGEDIYLVKKFFEASGFYPEIGIS-ILV 366 (429)
Q Consensus 293 ---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l~-~L~ 366 (429)
-+.+..+.++..+.. .-..++...+..+..++-.. .+...+.+....+.+....+...+ .|.
T Consensus 235 ~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~ 302 (334)
T 1in4_A 235 ADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302 (334)
T ss_dssp CSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHH
T ss_pred CCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHH
Confidence 112222222222211 11245555555555444332 235556555554322111112222 789
Q ss_pred HcCceeEccCCeEEcc
Q 048064 367 DKALIAINSYNKITMH 382 (429)
Q Consensus 367 ~~sLi~~~~~~~~~mH 382 (429)
..|+++....|+.-..
T Consensus 303 ~~g~i~~~~~gr~~~~ 318 (334)
T 1in4_A 303 QAGFLARTPRGRIVTE 318 (334)
T ss_dssp HTTSEEEETTEEEECH
T ss_pred HcCCeecccccHHhhH
Confidence 9999999888876443
No 50
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.6e-06 Score=83.53 Aligned_cols=168 Identities=18% Similarity=0.256 Sum_probs=98.8
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
.++.|-+...++|.+.+. .++-|.++|++|+|||.||+++++.....| +............
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 478899999998887642 578899999999999999999999875432 2222222211111
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--CCC
Q 048064 155 G-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--LPE 215 (429)
Q Consensus 155 ~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~~ 215 (429)
+ .....+.++. ..-...+.+|++|+++... ....++..+... ..+
T Consensus 285 Gesek~ir~lF~----------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 285 GEGARMVRELFE----------------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp SHHHHHHHHHHH----------------HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred CHHHHHHHHHHH----------------HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 1 1222222222 2223568999999996331 122233333222 233
Q ss_pred CEEEEEeCChhhh-----hhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 216 SRILITTRNKQVL-----RNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 216 ~~iiiTtR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
..||.||.....+ ..-.....+.++..+.++-.++|..++..-. ...+. -...|++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGI--RWELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSC--CHHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCC--CHHHHHHHCCCCC
Confidence 3455566544322 2123567889999999999999987763322 11111 1456777887753
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.3e-06 Score=84.29 Aligned_cols=168 Identities=17% Similarity=0.312 Sum_probs=100.1
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
-.++.|-+...++|.+.+. .++-|.+|||+|+|||.||+++++..... ++...........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhcccc
Confidence 4577899999988887663 46889999999999999999999987533 2222232221111
Q ss_pred CC-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--CC
Q 048064 154 GG-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--LP 214 (429)
Q Consensus 154 ~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~ 214 (429)
.+ .....+.+.. ..-...+.+|+||++|... .+..++..+..+ ..
T Consensus 256 ~Gese~~ir~~F~----------------~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 256 IGESARIIREMFA----------------YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SSHHHHHHHHHHH----------------HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred chHHHHHHHHHHH----------------HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 11 1222222222 2224578999999996321 123344333222 23
Q ss_pred CCEEEEEeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCh
Q 048064 215 ESRILITTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHAFRQNL-VDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 215 ~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~P 280 (429)
+..||.||..+..+.. + .....+.++..+.++-.++|..+...-.. ...+ ...+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 4556667765543322 1 23557889888999888998877633221 1112 456777777754
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=7.2e-07 Score=85.92 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=93.1
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
-.++.|-+...++|.+.+. .++-+.++||+|+|||+||+++++.....| +..+........
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 3578899999988887653 467799999999999999999999875332 222222211111
Q ss_pred CC-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCC--CC
Q 048064 154 GG-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRL--LP 214 (429)
Q Consensus 154 ~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~--~~ 214 (429)
.+ .....+.++. ..-...+.++++|+++... .+..|+..+..+ ..
T Consensus 247 ~Ge~e~~ir~lF~----------------~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 247 LGEGPRMVRDVFR----------------LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp CSHHHHHHHHHHH----------------HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred cchhHHHHHHHHH----------------HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 11 1222222222 1223468999999995221 123333332211 23
Q ss_pred CCEEEEEeCChhh-----hhhcCCCeEEEcCCCC-HHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCh
Q 048064 215 ESRILITTRNKQV-----LRNCHINQIYEMKGLG-DDHALELFIRHAFRQNL-VDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 215 ~~~iiiTtR~~~~-----~~~~~~~~~~~l~~L~-~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~P 280 (429)
+..||.||...+. .........+.++.++ .++-..+|..+...-.. ...+ ...+++.+.|.-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 4456667765432 2211234567787664 55555666555432221 1112 456777777753
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=5.4e-07 Score=86.90 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=100.1
Q ss_pred CCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 88 SKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
.-.++.|-+...++|.+.+. .++-|.+|||||+|||.||++++...... ++..+.......
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhc
Confidence 34678999999999887643 46789999999999999999999987533 223223222111
Q ss_pred cCC-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH----------------HHHHHhccCCCCC--
Q 048064 153 AGG-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN----------------QIESLVGSLDRLL-- 213 (429)
Q Consensus 153 ~~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~-- 213 (429)
..+ .....+.++.. .-...+.+|++|+++... .+..++..+..+.
T Consensus 255 ~vGese~~ir~lF~~----------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 255 YIGEGAKLVRDAFAL----------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp CSSHHHHHHHHHHHH----------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ccchHHHHHHHHHHH----------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 111 12222222221 123468999999995321 1233444444322
Q ss_pred CCCEEEEEeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCC
Q 048064 214 PESRILITTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHAFRQNL-VDVDYKELSDKVINYAQGV 279 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~ 279 (429)
.+..||.||..+..+.. + .....+.++..+.++-.++|..+...-.. ...+ ...+++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 33445557765543221 1 34567889999999999998776533221 1112 45677788775
No 54
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.56 E-value=1.3e-07 Score=77.57 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=64.3
Q ss_pred cccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 91 ELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
.++|++..++++.+.+. ....|.|+|++|+|||++|+.+++.........+ + ++..... ..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~-~~~~~~~-~~------------ 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-Y-RELTPDN-AP------------ 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-E-EECCTTT-SS------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-E-ECCCCCc-ch------------
Confidence 57899999999988774 5667899999999999999999886432211122 2 2222111 10
Q ss_pred HhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 167 VLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 167 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
....+.... ..-+|+||+++.. .....++..+.......++|.||...
T Consensus 67 ---------~~~~~~~~a--~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 67 ---------QLNDFIALA--QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ---------CHHHHHHHH--TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ---------hhhcHHHHc--CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 111111111 2247899999744 33444554444334566777777643
No 55
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.55 E-value=9.4e-07 Score=79.87 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=95.9
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
....+++|.+..++++.+.+. ..+-+.|+|++|+||||||+.+++.....| +.+ +.......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i-~~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTI-SGSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEE-CSCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEE-eHHHHHHH
Confidence 445678999988887766542 255799999999999999999998764322 222 22111100
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcCCcEEEEecCCCCH----------------HHHHHHhccCCCC--C
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSCRKVLIVLDDVTCL----------------NQIESLVGSLDRL--L 213 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~ 213 (429)
..+ .....+.. +.......+.++++|+++.. .....++..+... .
T Consensus 85 ~~~----------------~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 85 FVG----------------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp CCC----------------CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred hhh----------------hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 000 00000111 12222345789999998422 1223333322211 2
Q ss_pred CCCEEEEEeCChhhh-hhc----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCC-ChHHHHHH
Q 048064 214 PESRILITTRNKQVL-RNC----HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQG-VPLALKIL 286 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~PLai~~~ 286 (429)
.+..||.||...... ..+ .....+.++..+.++-.+++..........+ + .....++..+.| ++--|..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~-~--~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-D--IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-T--CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCc-c--ccHHHHHHHcCCCCHHHHHHH
Confidence 344566666654322 111 2345788888898888888876653221111 1 113446666777 66655544
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.52 E-value=5.1e-07 Score=88.94 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhcCCHHHH
Q 048064 88 SKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKAGGLAFL 159 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~ 159 (429)
..+.++||+.+++.+...+. ....+.|+|++|+|||++|+.+++.+.... ...++..++.. .
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--~-------- 247 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT--K-------- 247 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc--c--------
Confidence 34579999999999999986 566789999999999999999999874432 12222222210 0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhh------hhh-c
Q 048064 160 QQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQV------LRN-C 231 (429)
Q Consensus 160 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~------~~~-~ 231 (429)
. .......+..+...+ ...+.+|++| -..+....+...+. ....++|.+|..... ... .
T Consensus 248 -------~--~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 248 -------Y--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -------c--cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 0 000112222222222 3467899999 22233333444433 223456655544321 111 1
Q ss_pred CCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 232 HINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 232 ~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
.....+.+++++.++..+++....
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 123579999999999999998655
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.52 E-value=5e-07 Score=95.81 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=83.0
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhh---cCC
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQK---AGG 155 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~---~~~ 155 (429)
.....++||+.+++++.+.+. ..+.+.|+|++|+|||++|+.+++.+.... ...++..++...... ...
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~ 246 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------C
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchH
Confidence 334679999999999999887 455689999999999999999999874321 223333333221100 001
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHhc--CCcEEEEecCCCCHH----------HHHHHhccCCCCCCCCEEEEEeC
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFRRLS--CRKVLIVLDDVTCLN----------QIESLVGSLDRLLPESRILITTR 223 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~~iiiTtR 223 (429)
...... .+...+. +++.+|+||+++... ....+...+. ..+..+|.+|.
T Consensus 247 ~~~~l~-----------------~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~ 307 (854)
T 1qvr_A 247 FEERLK-----------------AVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATT 307 (854)
T ss_dssp HHHHHH-----------------HHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEEC
T ss_pred HHHHHH-----------------HHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecC
Confidence 111111 1222222 367899999997543 1112222222 12344555554
Q ss_pred Chhh-----hhh-cCCCeEEEcCCCCHHHHHHHHHHh
Q 048064 224 NKQV-----LRN-CHINQIYEMKGLGDDHALELFIRH 254 (429)
Q Consensus 224 ~~~~-----~~~-~~~~~~~~l~~L~~~ea~~L~~~~ 254 (429)
.... ... ......+.+++++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 3322 111 122345889999999999998654
No 58
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.4e-06 Score=83.17 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=98.4
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
-.++.|.+...++|.+.+. .++-|.++||+|+|||.||++++......| +..+........
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhcc
Confidence 3567889999988887653 467899999999999999999999875433 222222221111
Q ss_pred C-CHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH----------------HHHHHHhccCCCC--CC
Q 048064 154 G-GLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL----------------NQIESLVGSLDRL--LP 214 (429)
Q Consensus 154 ~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~ 214 (429)
. ......+.++.. .-...+.+|+||++|.. ..+..++..+... ..
T Consensus 257 vGesek~ir~lF~~----------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 257 LGDGPRLCRQIFKV----------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp SSHHHHHHHHHHHH----------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CchHHHHHHHHHHH----------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 1 122222222222 22346899999999632 1122333322211 23
Q ss_pred CCEEEEEeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCC-CChhHHHHHHHHHHHhCCCh
Q 048064 215 ESRILITTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHAFRQNL-VDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 215 ~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~P 280 (429)
+..||.||...+.+.. + .....+.++..+.++-.++|..++..-.. ...+ ...+++.+.|.-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 4445557765544322 1 23456888888999989999877633221 1112 456777777653
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.51 E-value=2.3e-06 Score=84.34 Aligned_cols=175 Identities=19% Similarity=0.201 Sum_probs=100.8
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
..++|.+..+++|.+++. ..+.+.|+|++|+|||++|+.+++... ..++..++........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEchHhhhhhc
Confidence 568999999999988763 346799999999999999999988763 2233333332221111
Q ss_pred CH-HHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH-------------HHHHHHhccCCC--CCCCCEE
Q 048064 155 GL-AFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL-------------NQIESLVGSLDR--LLPESRI 218 (429)
Q Consensus 155 ~~-~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~--~~~~~~i 218 (429)
+- ......+ +.....+.+.+|+||+++.. .....|+..+.. ...+..|
T Consensus 280 g~~~~~~~~~----------------f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 280 GESESNLRKA----------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp THHHHHHHHH----------------HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred chhHHHHHHH----------------HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 10 0111111 22333456789999999422 122333333321 1234455
Q ss_pred EEEeCChhh-hhh----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC-hHHHHHHH
Q 048064 219 LITTRNKQV-LRN----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV-PLALKILG 287 (429)
Q Consensus 219 iiTtR~~~~-~~~----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-PLai~~~~ 287 (429)
|.||..... ... ......+.++..+.++-.++|..++........ .....++..+.|. +-.|..+.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHHH
Confidence 556665422 111 134457899999999999999887633221111 1135566667664 55555443
No 60
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.49 E-value=2.3e-06 Score=79.40 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHHhhc----------------CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 90 NELVGVESRVEEIQSLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..++|.+..++.+...+. ....+.|+|++|+|||++|+.+++.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 458888888888876653 256799999999999999999999873
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.45 E-value=3.7e-06 Score=88.16 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=89.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC------cceeEEEeechhhhh---hcCC
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN------FKGSCFLENIREESQ---KAGG 155 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~---~~~~ 155 (429)
.....++||+.+++++.+.+. ....+.|+|++|+|||++|+.+++.+... ....++..+...... ....
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSC
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccch
Confidence 344679999999999999987 56778999999999999999999986432 122333332221110 0011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH----------HHH-HHHhccCCCCCCCCEEEEEeC
Q 048064 156 LAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL----------NQI-ESLVGSLDRLLPESRILITTR 223 (429)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~-~~l~~~l~~~~~~~~iiiTtR 223 (429)
.....+. +...+ ..++.+|+|||++.. ... ..+...+. .....+|.+|.
T Consensus 263 ~e~~l~~-----------------~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~ 323 (758)
T 1r6b_X 263 FEKRFKA-----------------LLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_dssp HHHHHHH-----------------HHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEEC
T ss_pred HHHHHHH-----------------HHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 1212222 22222 235689999999854 122 22333332 23455666665
Q ss_pred Chhhhhh-------cCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 224 NKQVLRN-------CHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 224 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
....... ......+.+++++.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4332111 1123468899999999999987654
No 62
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.39 E-value=1.7e-06 Score=73.51 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=31.1
Q ss_pred hhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 95 VESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 95 R~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
....++.+.+++. ....++|+|++|+|||||++.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445555555543 467899999999999999999999875
No 63
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.38 E-value=9.8e-06 Score=79.34 Aligned_cols=170 Identities=14% Similarity=0.190 Sum_probs=97.9
Q ss_pred CCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 88 SKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 88 ~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
...+++|.+..++++.+.+. .++-+.|+|++|+|||+||+.++......| +..+........
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHH
Confidence 34678999988887777543 245699999999999999999999764332 222222221111
Q ss_pred CCHH-HHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH----------------HHHHHHhccCCCC--CC
Q 048064 154 GGLA-FLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL----------------NQIESLVGSLDRL--LP 214 (429)
Q Consensus 154 ~~~~-~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~ 214 (429)
.+.. .-.+. .+.....+.+.+|+||+++.. ..+..++..+..+ ..
T Consensus 90 ~g~~~~~~r~----------------lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 90 VGVGAARVRD----------------LFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp TTHHHHHHHH----------------HHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred hcccHHHHHH----------------HHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 1110 00111 123334457899999999642 1233343332211 23
Q ss_pred CCEEEEEeCChhhhhh--c---CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 215 ESRILITTRNKQVLRN--C---HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 215 ~~~iiiTtR~~~~~~~--~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
+..||.||.....+.. . .....+.+++.+.++-.+++..++....... .. ....++..+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-DV--NLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-TC--CHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-hh--hHHHHHHhcCCCc
Confidence 4556667766543321 1 2345788999998888888877653322111 11 1345778888877
No 64
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=2.8e-06 Score=78.62 Aligned_cols=144 Identities=8% Similarity=0.067 Sum_probs=89.4
Q ss_pred chhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhh---cCcceeEEEeechhhhhhcCCHHHHHHHHHHHHh
Q 048064 94 GVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS---RNFKGSCFLENIREESQKAGGLAFLQQKLLSEVL 168 (429)
Q Consensus 94 GR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (429)
|-++.++.|...+. ..+...++|++|+||||+|..+++... ..++....+. ... ...+...+ +.+.....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~~---~~~~id~i-r~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PEG---ENIGIDDI-RTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CSS---SCBCHHHH-HHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CCc---CCCCHHHH-HHHHHHHh
Confidence 34556677777776 445889999999999999999988532 1233333332 110 01222222 22333222
Q ss_pred cCCCCCCCHHHHHHHhcCCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCCh-hhhhhcCCCeEEEcCCCCHH
Q 048064 169 KDVNVIPHIDLNFRRLSCRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNK-QVLRNCHINQIYEMKGLGDD 245 (429)
Q Consensus 169 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~~~~~~~l~~L~~~ 245 (429)
... ..+++-++|+|+++. ....+.|+..+....+.+.+|++|.++ .+.+.+... .+++.+++.+
T Consensus 76 ~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 76 YSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp SCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred hcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 110 123467999999984 456677777777666777777766544 344444334 8999999999
Q ss_pred HHHHHHHHhh
Q 048064 246 HALELFIRHA 255 (429)
Q Consensus 246 ea~~L~~~~~ 255 (429)
+..+++....
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.35 E-value=2.7e-06 Score=77.16 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=34.9
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..++|.+..++++.+.+. ....+.|+|++|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 468899999888876654 567789999999999999999998754
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.33 E-value=7.5e-06 Score=75.81 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|++..++++.+.+. ....|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358899999998888775 56678999999999999999999865
No 67
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.32 E-value=3.6e-07 Score=74.71 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
-.++|++..++++.+.+. ....|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357899999998888775 56679999999999999999887754
No 68
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.32 E-value=2.6e-06 Score=73.87 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCCCcccchhh----HHHHHHHhhcCC------CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 87 DSKNELVGVES----RVEEIQSLLGAA------PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 87 ~~~~~~vGR~~----~~~~l~~~l~~~------~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
....+|++... .++.+..++... +.+.|+|++|+|||+||+.+++.........+++
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34456776543 344445555411 7899999999999999999999876554444444
No 69
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.32 E-value=3.4e-07 Score=83.29 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=84.9
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
.....++|.+..++.+.+.+. ..+.+.|+|++|+|||+||+.+++.....|- ..+......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~----~v~~~~~~~- 82 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF----SMGGSSFIE- 82 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC----CCCSCTTTT-
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE----EechHHHHH-
Confidence 445789999998888887654 2456889999999999999999998654331 111111000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhcCCcEEEEecCCCCHHH-----------------HHHHhccCCCCC-
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDL-NFRRLSCRKVLIVLDDVTCLNQ-----------------IESLVGSLDRLL- 213 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~~-----------------~~~l~~~l~~~~- 213 (429)
..... ....+.. +.......+.+|+|||++.... +..++..+....
T Consensus 83 -------------~~~~~--~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 83 -------------MFVGL--GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------------SCSSS--CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------------hhcch--HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 00000 0111111 2223334678999999964421 222333332211
Q ss_pred --CCCEEEEEeCChhhhh-h-c---CCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 214 --PESRILITTRNKQVLR-N-C---HINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 214 --~~~~iiiTtR~~~~~~-~-~---~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
....||.||.....+. . . .....+.+++.+.++..+++...+
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1244666666553221 1 1 223467888899998888887765
No 70
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.32 E-value=3e-06 Score=78.68 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=38.3
Q ss_pred CcccchhhHHHHHHHhhcC-----------CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 90 NELVGVESRVEEIQSLLGA-----------APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~-----------~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..++|.+..++.+...+.. ...+.|+|++|+|||++|+.+++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4578888888888887751 2479999999999999999999987543
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.31 E-value=2.7e-05 Score=76.39 Aligned_cols=95 Identities=8% Similarity=0.006 Sum_probs=59.0
Q ss_pred EEEEecCCC--CHHHHHHHhccCCCCCCCCEEEEEe---------CC----h-hhhh-hcCCCeEEEcCCCCHHHHHHHH
Q 048064 189 VLIVLDDVT--CLNQIESLVGSLDRLLPESRILITT---------RN----K-QVLR-NCHINQIYEMKGLGDDHALELF 251 (429)
Q Consensus 189 ~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTt---------R~----~-~~~~-~~~~~~~~~l~~L~~~ea~~L~ 251 (429)
-+++||+++ +.+..+.|+..+...... .+|+.| .+ + .+.+ .......+.+++++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 389999997 445677788777754444 344343 11 1 1111 1123355799999999999999
Q ss_pred HHhhhcCCCCChhHHHHHHHHHHHh-CCChHHHHHH
Q 048064 252 IRHAFRQNLVDVDYKELSDKVINYA-QGVPLALKIL 286 (429)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~~~-~G~PLai~~~ 286 (429)
..++...... -..+....++..+ +|.|.....+
T Consensus 376 ~~~~~~~~~~--~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGIN--ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTCC--BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHccCCCHHHHHHH
Confidence 8776322211 1235567788888 8888765444
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.29 E-value=7.2e-06 Score=84.93 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=97.9
Q ss_pred CcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcC
Q 048064 90 NELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAG 154 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 154 (429)
.++.|.+..+++|.+.+. .++-|.++|++|+|||+||+.+++.... .++..+.........
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~----~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC----EEEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----eEEEEEhHHhhcccc
Confidence 567889998888887653 4678999999999999999999987642 333333332211111
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHH-------------HHHHHhccCCCCC--CCCEE
Q 048064 155 G-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLN-------------QIESLVGSLDRLL--PESRI 218 (429)
Q Consensus 155 ~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~~--~~~~i 218 (429)
+ .....+.++ .......+.+|+||+++... ....|+..+.... .+..|
T Consensus 280 gese~~lr~lF----------------~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 280 GESESNLRKAF----------------EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp THHHHHHHHHH----------------HHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred hHHHHHHHHHH----------------HHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1 122222222 22234578999999996331 1233333222111 23344
Q ss_pred EEEeCChhhh-hhc----CCCeEEEcCCCCHHHHHHHHHHhhhcCC-CCChhHHHHHHHHHHHhCCCh
Q 048064 219 LITTRNKQVL-RNC----HINQIYEMKGLGDDHALELFIRHAFRQN-LVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 219 iiTtR~~~~~-~~~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~P 280 (429)
|.||...+.+ +.+ .....+.++..+.++-.++|+.+..... ....+ ...++..+.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 5566544322 111 3456789999999999999987763222 11111 456778887764
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.28 E-value=3.8e-06 Score=88.00 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=83.2
Q ss_pred CCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcCc------ceeEEEeechhhhhhcCCHHHHH
Q 048064 89 KNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRNF------KGSCFLENIREESQKAGGLAFLQ 160 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~ 160 (429)
...++||+.+++++...+. ....+.++|++|+|||++|+.+++.+.... ...++..+...
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~------------ 246 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------ 246 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc------------
Confidence 4579999999999999986 566799999999999999999999874321 12222221100
Q ss_pred HHHHHHHhcCCCCCCCHHHHHH-HhcCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhh------hhh-cC
Q 048064 161 QKLLSEVLKDVNVIPHIDLNFR-RLSCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQV------LRN-CH 232 (429)
Q Consensus 161 ~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~------~~~-~~ 232 (429)
.. .......+..+.. .....+.+|+|| ...+....+...+. ....++|.||..... .+. ..
T Consensus 247 -----~~--~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 247 -----KY--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -----cc--cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 00 0011122233222 233567899999 22333333444433 234556666554431 000 11
Q ss_pred CCeEEEcCCCCHHHHHHHHHHhh
Q 048064 233 INQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 233 ~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
....+.+++++.++..+++....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHH
Confidence 23679999999999999998654
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.27 E-value=2.1e-05 Score=70.68 Aligned_cols=171 Identities=13% Similarity=0.170 Sum_probs=90.5
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
....+++|.+....++.+... -.+-++|+|++|+|||||++.++..... ..+.+. .......
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~ 88 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 88 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHH
Confidence 444678888877776665432 1345999999999999999999987642 122222 1111110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHH----------------HHHHHhccCCCCCC-
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLN----------------QIESLVGSLDRLLP- 214 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~~- 214 (429)
.... .... +..+.+.. ...+.++++||++... ....++..+.....
T Consensus 89 ~~~~--~~~~--------------i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 89 FVGV--GAAR--------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp CTTH--HHHH--------------HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HhhH--HHHH--------------HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 0110 0000 11122222 2356899999995321 12333333322121
Q ss_pred C-CEEEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 215 E-SRILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 215 ~-~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
. ..++.||..+..+.. ......+.++..+.++-.+++........... + .....+++.+.|+-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCT-T--CCHHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCc-c--cCHHHHHHHcCCCC
Confidence 2 234446666544322 13456788999999988888876652211111 1 11345666676654
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.24 E-value=3.1e-05 Score=70.65 Aligned_cols=171 Identities=13% Similarity=0.176 Sum_probs=92.0
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
....+++|.+....++.+... -.+-++|+|++|+|||||++.++..... ..+.+. .......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~ 112 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 112 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHH
Confidence 455789999988777766543 1334899999999999999999987642 222222 1111110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH----------------HHHHHHhccCCCCCCC
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL----------------NQIESLVGSLDRLLPE 215 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~~~ 215 (429)
.... .... +..+.+.. ...+.++++||++.. ..+..++..+......
T Consensus 113 ~~~~--~~~~--------------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 113 FVGV--GAAR--------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TTTH--HHHH--------------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred HhhH--HHHH--------------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 0000 0000 11122222 235689999999522 1123333333322222
Q ss_pred --CEEEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 216 --SRILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 216 --~~iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
..++.+|..+..+.. ......+.++..+.++-.+++...+....... + .....++..+.|+.
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCT-T--CCHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCc-c--cCHHHHHHHcCCCC
Confidence 234446665543221 13456788999999998888876652221111 1 11345666776655
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.21 E-value=2.3e-05 Score=71.33 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
-.++.|-++..++|.+.+. ..+-++|+|++|+|||||++.++..... ..+.+. ......
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~-- 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLN-- 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHh--
Confidence 3566777777777665432 2344999999999999999999987542 222232 211110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHH-------------HHHHHhccCCCC--CCCCE
Q 048064 154 GGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLN-------------QIESLVGSLDRL--LPESR 217 (429)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~-------------~~~~l~~~l~~~--~~~~~ 217 (429)
.......+. +..+.+.. ...+.++++|+++... ....++..+... ....-
T Consensus 83 ~~~~~~~~~--------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 83 MYVGESERA--------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp STTHHHHHH--------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred hhhhHHHHH--------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 001111110 01111111 3457899999996421 122233222211 12233
Q ss_pred EEEEeCChhhhhh-----cCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 218 ILITTRNKQVLRN-----CHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 218 iiiTtR~~~~~~~-----~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
++.+|..+.++.. ......+.++..+.++-.+++....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 4556666654322 1346778899999999999998765
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.14 E-value=7.3e-06 Score=85.82 Aligned_cols=143 Identities=15% Similarity=0.225 Sum_probs=82.9
Q ss_pred CcccchhhHHHHHHHhhc----C-----C--CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHH
Q 048064 90 NELVGVESRVEEIQSLLG----A-----A--PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAF 158 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~-----~--~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 158 (429)
..++|.+..++.+...+. + . ..+.++|++|+|||++|+.+++.+.......+.+ ++..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc--
Confidence 468999999988888775 1 1 1699999999999999999999874332223333 333322211110
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHhc-CCcEEEEecCCCCH--HHHHHHhccCCC-----------CCCCCEEEEEeCC
Q 048064 159 LQQKLLSEVLKDVNVIPHIDLNFRRLS-CRKVLIVLDDVTCL--NQIESLVGSLDR-----------LLPESRILITTRN 224 (429)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~--~~~~~l~~~l~~-----------~~~~~~iiiTtR~ 224 (429)
...+...++ ...-+|+||+++.. +....|+..+.. ...+..||+||..
T Consensus 568 ------------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ------------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000111111 22348999999733 334444433321 1235578888873
Q ss_pred h-----------------hhhhhcCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 225 K-----------------QVLRNCHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 225 ~-----------------~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
. .+.. ....++.+++++.++..+++...+
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1112 223688999999999888886654
No 78
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.09 E-value=7.6e-06 Score=67.21 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=31.8
Q ss_pred CcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 90 NELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
+.++|...+.-.....+ ....++|+|++|+|||||++.++.....
T Consensus 18 ~f~~g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 18 KFLGTENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCCSCCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred hcCcCccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44445544433222222 6788999999999999999999997754
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.09 E-value=2.6e-05 Score=71.82 Aligned_cols=28 Identities=32% Similarity=0.701 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.++.+.++|++|+|||+||+.+++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999998843
No 80
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.08 E-value=6.3e-05 Score=74.09 Aligned_cols=171 Identities=13% Similarity=0.201 Sum_probs=94.8
Q ss_pred CCCCcccchhhHHHHHHHhhc--------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQK 152 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 152 (429)
....+++|.+..+.++.+... -.+-+.|+|++|+||||||+.++..... .++..+.......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEGGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEehhHHHHh
Confidence 455789999988887776543 1345999999999999999999987642 2222222221110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH----------------HHHHHHhccCCCCC--
Q 048064 153 AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL----------------NQIESLVGSLDRLL-- 213 (429)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~-- 213 (429)
..+. .... ...+. +.. ...+.++++|+++.. ..+..++..+....
T Consensus 104 ~~g~--~~~~-v~~lf-------------q~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 104 FVGV--GAAR-VRDLF-------------ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp CTTH--HHHH-HHHHT-------------TTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hhhh--HHHH-HHHHH-------------HHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 1111 0011 11111 111 124579999999522 12334443333222
Q ss_pred CCCEEEEEeCChhhhhh-c----CCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCCh
Q 048064 214 PESRILITTRNKQVLRN-C----HINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGVP 280 (429)
Q Consensus 214 ~~~~iiiTtR~~~~~~~-~----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 280 (429)
....++.||..+..+.. + .....+.++..+.++-.+++..++....... + .....++..+.|+.
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~-d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE-D--VDLALLAKRTPGFV 236 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC-S--STTHHHHTTSCSCC
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh-H--HHHHHHHHhcCCCC
Confidence 23345556665544321 1 2345788999999999999987653221111 1 11445777777776
No 81
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.06 E-value=3.8e-05 Score=71.96 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=40.2
Q ss_pred CcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 90 NELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..++|++..++.+...+.....+.++|++|+|||+||+.+++.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5689999999988888776678999999999999999999987643
No 82
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.03 E-value=8.4e-05 Score=74.44 Aligned_cols=154 Identities=19% Similarity=0.282 Sum_probs=79.5
Q ss_pred cccchhhHHHHHHHhhc--------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHH
Q 048064 91 ELVGVESRVEEIQSLLG--------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQK 162 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (429)
.++|.+.....+.+.+. ....++|+|++|+||||||+.++......|.. + ++..... ..........
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i-~~~~~~~-~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---I-SLGGVRD-ESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---E-CCCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---E-Eecccch-hhhhhhHHHH
Confidence 47888877777765443 46789999999999999999999887433221 1 1111000 0000000000
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCHHH------HHHHhccCCCCC---------------CCCEEEEE
Q 048064 163 LLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCLNQ------IESLVGSLDRLL---------------PESRILIT 221 (429)
Q Consensus 163 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~l~~~l~~~~---------------~~~~iiiT 221 (429)
. . ......+...........-+++||+++.... ...++..+.... ....||.|
T Consensus 157 ~---i---g~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 157 Y---V---GAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp -------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred H---h---ccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 0 0 0011112222222222344888999974421 234444442111 23456666
Q ss_pred eCChhhhh-h-cCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 222 TRNKQVLR-N-CHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 222 tR~~~~~~-~-~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
|....... . ......+.+++++.++-.+++..+.
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 65432111 1 1122578999999999999988765
No 83
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.88 E-value=0.00013 Score=69.71 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+.++|++|+|||++|+.+++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998873
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.84 E-value=7.6e-05 Score=78.31 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=84.3
Q ss_pred CCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhc
Q 048064 89 KNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKA 153 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 153 (429)
-..++|.+..+++|.+++. ....++|+|++|+||||||+.++...... ++..+........
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~----~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE----EEEEEHHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc----EEEEEchHhhhhh
Confidence 3678999999999888763 35679999999999999999998876432 2222222211100
Q ss_pred CC-HHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcEEEEecCCCCH-------------HHHHHHhccCCCC--CCCCE
Q 048064 154 GG-LAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRKVLIVLDDVTCL-------------NQIESLVGSLDRL--LPESR 217 (429)
Q Consensus 154 ~~-~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~~~~l~~~l~~~--~~~~~ 217 (429)
.+ .......+ +.......+.++++|+++.. .....++..+... ..+..
T Consensus 279 ~g~~~~~l~~v----------------f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 279 AGESESNLRKA----------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp TTHHHHHHHHH----------------HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred hhhHHHHHHHH----------------HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 00 11111111 11222346789999999421 1122222222211 23445
Q ss_pred EEEEeCChhhhh-hc----CCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 218 ILITTRNKQVLR-NC----HINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 218 iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
+|.||.....+. .+ .....+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 555665542221 11 233567888899999999998765
No 85
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.74 E-value=0.00021 Score=74.85 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHhhc----C-------CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----A-------APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~-------~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|.+..++.+...+. + ...+.++|++|+|||++|+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 468899999988877665 1 1269999999999999999999987
No 86
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.52 E-value=0.00018 Score=66.61 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=37.5
Q ss_pred CCcccc----hhhHHHHHHHhhcC-----CCEEEEEcCCCcchHHHHHHHHHHhh-cCcceeEEE
Q 048064 89 KNELVG----VESRVEEIQSLLGA-----APLLGIWGIGGIGKTTIARVIFNRIS-RNFKGSCFL 143 (429)
Q Consensus 89 ~~~~vG----R~~~~~~l~~~l~~-----~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~ 143 (429)
...|++ +...++.+.+++.. ...+.|+|++|+|||+||..+++.+. .....+.++
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 355664 33344445555542 57899999999999999999999876 543334444
No 87
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.52 E-value=0.00033 Score=72.67 Aligned_cols=169 Identities=17% Similarity=0.226 Sum_probs=80.0
Q ss_pred CCCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ 151 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 151 (429)
.....+.|.+...++|.+.+. ..+-+.++|++|+|||.+|++++...... ++.........
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~----f~~v~~~~l~s 549 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIKGPELLT 549 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE----EEECCHHHHHT
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc----eEEeccchhhc
Confidence 334567788888888887654 34568999999999999999999986432 22221111100
Q ss_pred h-cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCHH----------------HHHHHhccCCCCC
Q 048064 152 K-AGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCLN----------------QIESLVGSLDRLL 213 (429)
Q Consensus 152 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~~~~l~~~l~~~~ 213 (429)
. ....... +..+.... ...+.+|+||++|... ....|+..+....
T Consensus 550 ~~vGese~~-----------------vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 550 MWFGESEAN-----------------VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp TTCSSCHHH-----------------HHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred cccchHHHH-----------------HHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 0 0011111 22222222 4578999999996321 1334444443222
Q ss_pred CCC-EEEE-EeCChh-----hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHhCCC
Q 048064 214 PES-RILI-TTRNKQ-----VLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYAQGV 279 (429)
Q Consensus 214 ~~~-~iii-TtR~~~-----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 279 (429)
... .++| ||..+. ++........+.++..+.++-.++|..+..... ...+. -...+++.+.|+
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~-~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC---CCC---------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC-CCCCC--CHHHHHHhCCCC
Confidence 222 2333 444332 222113456777887777777788876653221 11111 134566666654
No 88
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.51 E-value=0.00027 Score=74.89 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=37.9
Q ss_pred CcccchhhHHHHHHHhhc----C-------CCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 90 NELVGVESRVEEIQSLLG----A-------APLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~-------~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..++|.+..++.+...+. + ...+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999999998888775 1 147999999999999999999998744
No 89
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=97.48 E-value=2.2e-05 Score=64.79 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=26.0
Q ss_pred CCcEEEeEeeecccccccccccchHHHHH
Q 048064 3 YAQIVIPVFYRVDPSHVRKQIGSFGVSFS 31 (429)
Q Consensus 3 ~~~~v~pvfy~v~p~~vr~~~~~~~~~~~ 31 (429)
.++.|+||||+|+|++||+|.|.|++.|.
T Consensus 105 ~~~~iiPV~~~v~p~~v~~~~~~~~~~~~ 133 (154)
T 3h16_A 105 GRSRILPIWHKVSKDEVASFSPTMADKLA 133 (154)
T ss_dssp SCCCEEEEEESCCTGGGTTTCCCCCSSCC
T ss_pred CCCEEEEEEecCCHHHHhhCCccHHHHHh
Confidence 45789999999999999999999998655
No 90
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.43 E-value=0.0035 Score=58.76 Aligned_cols=156 Identities=10% Similarity=-0.029 Sum_probs=100.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh-cCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS-RNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (429)
-.++..++|+.|.||++.+..+.+.+. ..|.....+. ... ..++..+...+... -+-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------------plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP----NTDWNAIFSLCQAM----------------SLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT----TCCHHHHHHHHHHH----------------HHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC----CCCHHHHHHHhcCc----------------CCcc
Confidence 467899999999999999999998764 2343211111 111 23444443332111 1234
Q ss_pred CcEEEEecCCCC-H--HHHHHHhccCCCCCCCCEEEEEeCC-------hhhhhh-cCCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 187 RKVLIVLDDVTC-L--NQIESLVGSLDRLLPESRILITTRN-------KQVLRN-CHINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 187 ~~~LlVlDdv~~-~--~~~~~l~~~l~~~~~~~~iiiTtR~-------~~~~~~-~~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
.+-++|+|+++. . ...+.+...+....+++.+|+++.. ..+... ......++..+++.++...++...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 566889999875 3 4667777777766667777766543 233333 2345789999999999999888876
Q ss_pred hcCCCCChhHHHHHHHHHHHhCCChHHHHHH
Q 048064 256 FRQNLVDVDYKELSDKVINYAQGVPLALKIL 286 (429)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~ 286 (429)
-..... -..+.+..+++.++|.+..+...
T Consensus 156 ~~~g~~--i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLE--LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCE--ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCC--CCHHHHHHHHHHhchHHHHHHHH
Confidence 443311 12466888999999999887654
No 91
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.42 E-value=0.0026 Score=53.55 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988653
No 92
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.28 E-value=0.00051 Score=58.39 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHH---hcCCC-CC----------
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEV---LKDVN-VI---------- 174 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~-~~---------- 174 (429)
...|.|++..|.||||+|...+-+...+--.+.++...... . ..+-..+...+.-.+ +.... ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-W-PNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-S-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-C-CccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 45677788888999999999999877664445554322210 0 112222222220000 00000 00
Q ss_pred -CCHHHHHHHhcCCc-EEEEecCCCC-----HHHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 175 -PHIDLNFRRLSCRK-VLIVLDDVTC-----LNQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 175 -~~~~~l~~~l~~~~-~LlVlDdv~~-----~~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
..+....+.+.+.+ =|||||++-. .-..+.++..+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 01111444454444 4999999832 122334444444445677899999986
No 93
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.22 E-value=0.00013 Score=61.98 Aligned_cols=109 Identities=14% Similarity=0.011 Sum_probs=53.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
..++.|+|+.|+||||++..++.+....-....++...... ..+...+...+. .............+...+.+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~---r~~~~~i~s~~g--~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS---RYHSTMIVSHSG--NGVEAHVIERPEEMRKYIEEDT 77 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC--------CCCEECC------CEECEEESSGGGGGGGCCTTE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc---ccCcccEEecCC--CceeeEEECCHHHHHHHhcCCC
Confidence 45789999999999999988888764432233333211100 000000000000 0000011122333444444455
Q ss_pred EEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 189 VLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 189 ~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
-+|++|++... +..+.+..... .+..|++|.++.
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESB
T ss_pred CEEEEECcccCCHHHHHHHHHHHH---CCCCEEEEeecc
Confidence 69999999643 33333322222 277888887743
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.05 E-value=0.00071 Score=62.16 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999987
No 95
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.98 E-value=0.00037 Score=65.69 Aligned_cols=112 Identities=13% Similarity=0.064 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcce-eEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKG-SCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (429)
....++|+|+.|+|||||.+.++..+...... .+.+.+..+... .... ....+.........-.+.+...|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~--~~~~----~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH--ESKK----CLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--CCSS----SEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh--hccc----cceeeeeeccccCCHHHHHHHHhhh
Confidence 55699999999999999999998876543222 222221111000 0000 0000000001111122347888889
Q ss_pred CcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChhhh
Q 048064 187 RKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQVL 228 (429)
Q Consensus 187 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~ 228 (429)
.+-+|++|+..+.+.++.+.... ..|..||+|+-+....
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999998877666554432 2355688888766443
No 96
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.97 E-value=0.00013 Score=76.47 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=82.6
Q ss_pred CCCCcccchhhHHHHHHHhhc---------------CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG---------------AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQ 151 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~---------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 151 (429)
.....++|.+...+.|.+.+. ..+.+.++|++|+|||+||+.++......|-. + +......
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v-~~~~l~~ 549 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---I-KGPELLT 549 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---C-CCSSSTT
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---E-echHhhh
Confidence 334678899988888887764 34568999999999999999999987544321 1 1111000
Q ss_pred hc-CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcEEEEecCCCCH----------------HHHHHHhccCCCCC
Q 048064 152 KA-GGLAFLQQKLLSEVLKDVNVIPHIDLNFRRL-SCRKVLIVLDDVTCL----------------NQIESLVGSLDRLL 213 (429)
Q Consensus 152 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------------~~~~~l~~~l~~~~ 213 (429)
.. ...... +..+.+.. ...+.+|+||+++.. .....++..+....
T Consensus 550 ~~~g~~~~~-----------------i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 550 MWFGESEAN-----------------VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp CCTTTSSHH-----------------HHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred hhcCccHHH-----------------HHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 00 000011 11111111 224578999998632 12345555554322
Q ss_pred --CCCEEEEEeCChhhhh-hc----CCCeEEEcCCCCHHHHHHHHHHhh
Q 048064 214 --PESRILITTRNKQVLR-NC----HINQIYEMKGLGDDHALELFIRHA 255 (429)
Q Consensus 214 --~~~~iiiTtR~~~~~~-~~----~~~~~~~l~~L~~~ea~~L~~~~~ 255 (429)
.+..||.||.....+. .+ .....+.++..+.++-.+++..+.
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 2334455665432221 11 223467788889999889987765
No 97
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.87 E-value=0.00078 Score=63.85 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=35.7
Q ss_pred cccchhhHHHHHHHhhc-----------------CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 91 ELVGVESRVEEIQSLLG-----------------AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 91 ~~vGR~~~~~~l~~~l~-----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++|.+..++.+...+. ..+.+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36788888877777661 346799999999999999999998873
No 98
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.86 E-value=0.00064 Score=57.11 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|.|+|++|+||||+|+.+++++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999998764
No 99
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.85 E-value=0.0014 Score=56.45 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=30.6
Q ss_pred hhhHHHHHHHhhc-----CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 95 VESRVEEIQSLLG-----AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 95 R~~~~~~l~~~l~-----~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
|++.++.|.+.+. ...+++|.|++|+||||+++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4445555555443 4568999999999999999999887643
No 100
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.85 E-value=0.00053 Score=67.55 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=39.8
Q ss_pred CcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 90 NELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..++|++..++.+...+.....+.|+|++|+|||+||+.+++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 468999999998888877778899999999999999999998764
No 101
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.0018 Score=56.55 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD--VNVIPHIDLNFRRLS 185 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~l~~~l~ 185 (429)
...++.|+|+.|+||||++..++++...+...++++...-.... . ..+...++.. .........+...+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~-~-------~~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRS-I-------RNIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGG-C-------SSCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchH-H-------HHHHHhcCCCccccccCCHHHHHHHHH
Confidence 45688999999999999999999988665444444421111000 0 0111111111 001122233444443
Q ss_pred C-----CcEEEEecCCCCH--HHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 186 C-----RKVLIVLDDVTCL--NQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 186 ~-----~~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
. +.-+||+|++... ++++.+.. +.. .+..||+|.+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 2 3459999999632 34433322 221 277899999854
No 102
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.74 E-value=0.0034 Score=56.11 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=26.3
Q ss_pred HHHHHhhcC----CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 100 EEIQSLLGA----APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 100 ~~l~~~l~~----~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+..++.+ ...+.++|++|+|||.+|..+++.+
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 345555552 3479999999999999999999864
No 103
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.74 E-value=0.0084 Score=58.60 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCCcccchh----hHHHHHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcCcc
Q 048064 87 DSKNELVGVE----SRVEEIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRNFK 138 (429)
Q Consensus 87 ~~~~~~vGR~----~~~~~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 138 (429)
..+..|-+.. ..+..+...+. +.+.+.|.|++|+||||++..++..+.....
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 3344444433 33444444444 3459999999999999999999988765543
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.66 E-value=0.086 Score=49.73 Aligned_cols=46 Identities=30% Similarity=0.429 Sum_probs=36.5
Q ss_pred CCcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 89 KNELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...++|....+.++...+. ....+.|.|++|+||+++|+.+.....
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 3568898888888777664 455688999999999999998876543
No 105
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.65 E-value=0.0067 Score=55.74 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++|+|++|+||||++..++..+...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 4689999999999999999999887654
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.65 E-value=0.0014 Score=55.92 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=29.9
Q ss_pred hHHHHHHHhhcC---CCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 97 SRVEEIQSLLGA---APLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 97 ~~~~~l~~~l~~---~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.-+..+..++.+ ...+.|+|++|+||||+|..+++.+..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 335556666653 347999999999999999999998743
No 107
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.64 E-value=0.0012 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+|+|.|++|+||||+++.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 108
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.61 E-value=0.0014 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....|+|+|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999876
No 109
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.60 E-value=0.003 Score=61.14 Aligned_cols=39 Identities=21% Similarity=0.518 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI 146 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 146 (429)
..+.++|+|++|+|||||+..++.....++...+.+..+
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~i 188 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGV 188 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeee
Confidence 566799999999999999999998766544433333333
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.58 E-value=0.0014 Score=55.39 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.+.|.|+|++|+||||+|+.++.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999876
No 111
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.55 E-value=0.0012 Score=62.10 Aligned_cols=30 Identities=23% Similarity=0.072 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
..+.++|+|++|+|||||++.+++.+..++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 788999999999999999999998775543
No 112
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.54 E-value=0.0011 Score=62.16 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCCcccchhhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 87 DSKNELVGVESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 87 ~~~~~~vGR~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.....++|.+..++.+...+. ....+.|+|++|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 344679999886665544332 344599999999999999999998764
No 113
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.53 E-value=0.001 Score=56.32 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.7
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
|.|.|+||+|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5689999999999999999988764444
No 114
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.004 Score=53.71 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+|.|.|+||+||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999875
No 115
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.50 E-value=0.0077 Score=58.03 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+.+|.++|++|+||||++..++..+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999887655
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.48 E-value=0.0026 Score=54.95 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+++|.|++|+|||||++.++..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988765
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.47 E-value=0.0035 Score=58.77 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|+|++|+|||||+.+++......-..++|+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 5679999999999999999999988765434455554
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.46 E-value=0.0015 Score=54.85 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 119
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.45 E-value=0.0041 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=19.2
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-++.|+|.+|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999876544
No 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.42 E-value=0.0019 Score=54.40 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988653
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.0017 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.7
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.+|+|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 44
No 122
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.42 E-value=0.0031 Score=53.36 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+|.|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45689999999999999999999987543
No 123
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.40 E-value=0.0018 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|+|++|+||||+++.++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998753
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.39 E-value=0.0032 Score=54.03 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 677999999999999999999999875
No 125
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.38 E-value=0.002 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+.|.|+|++|+||||+++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999876
No 126
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.38 E-value=0.0028 Score=53.71 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..|.|.|++|+||||+++.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998764
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.38 E-value=0.0019 Score=55.45 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 128
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.37 E-value=0.0023 Score=54.27 Aligned_cols=27 Identities=19% Similarity=0.491 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...|+|.|++|+||||+++.++.++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999999999998753
No 129
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.34 E-value=0.0095 Score=57.54 Aligned_cols=55 Identities=18% Similarity=0.382 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLS 165 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (429)
..+.++|.|.+|+|||+|+..+++.+.......+.+..+.+.. .....+.+.+..
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~---rEv~e~~~~~~~ 206 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT---REGNDLYHEMIE 206 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCH---HHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcc---hHHHHHHHHhhh
Confidence 7889999999999999999999998654433333333444322 234445555544
No 130
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.34 E-value=0.0031 Score=53.67 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.1
Q ss_pred cCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 107 GAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 107 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.....|+|.|++|+||||+|+.+++.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999876
No 131
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.33 E-value=0.0036 Score=60.41 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=35.6
Q ss_pred CcccchhhHHHHHHHhhc----------------CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 90 NELVGVESRVEEIQSLLG----------------AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----------------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..++|.+...+.|...+. ..+.+.++|++|+||||+|+.++..+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 457777777777765541 2467999999999999999999998743
No 132
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.33 E-value=0.0021 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...|.|.|++|+||||+++.++..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 133
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.30 E-value=0.011 Score=56.95 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
++++.++|++|+||||++..++..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999877654
No 134
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.29 E-value=0.022 Score=57.22 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=29.7
Q ss_pred HHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeE
Q 048064 102 IQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSC 141 (429)
Q Consensus 102 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 141 (429)
....+...+++.|.|++|+||||++..+...+......+.
T Consensus 197 Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 197 VLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp HHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3333336789999999999999999999987665433333
No 135
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.27 E-value=0.0028 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+.|+|.|++|+||||+++.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.27 E-value=0.0029 Score=54.28 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999998876
No 137
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.26 E-value=0.0021 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999875
No 138
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.23 E-value=0.0025 Score=54.85 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..++++|+|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 567899999999999999999988763
No 139
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.23 E-value=0.0028 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+++|+|++|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999988754
No 140
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.23 E-value=0.0026 Score=53.95 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.8
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
++++|.|+.|+|||||++.++......+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 6799999999999999999998765333
No 141
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.22 E-value=0.0024 Score=53.49 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+.|+|.|++|+||||+|+.++.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998763
No 142
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.20 E-value=0.0041 Score=63.09 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCcccchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 89 KNELVGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 89 ~~~~vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...++|.+..++.+...+.....++|+|++|+||||||+.++..+...
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 357899999999888888877899999999999999999999876433
No 143
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.19 E-value=0.0023 Score=53.87 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|.|.|++|+||||+|+.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999988753
No 144
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.19 E-value=0.0028 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+..|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998875
No 145
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.19 E-value=0.0028 Score=53.51 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
++|+|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999998763
No 146
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.18 E-value=0.0026 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=22.2
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+++|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999998763
No 147
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.16 E-value=0.0032 Score=53.73 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+|+|.|++|+||||+|+.+++++.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998763
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.15 E-value=0.0035 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 567999999999999999999887
No 149
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.005 Score=53.21 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
....|+|.|++|+||||+++.+++++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999987544
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.0069 Score=53.52 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|.|++|+|||||+.+++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 6789999999999999999998887654434455553
No 151
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.12 E-value=0.0051 Score=54.58 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.+..|+|.|++|+||||+|+.+++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55679999999999999999998875
No 152
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.12 E-value=0.0035 Score=53.83 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|+|||||++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998764
No 153
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.12 E-value=0.0035 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+++|.|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998765
No 154
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.10 E-value=0.0037 Score=53.40 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999987654
No 155
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.09 E-value=0.0032 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
No 156
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.07 E-value=0.0038 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=22.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 157
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.07 E-value=0.0036 Score=53.97 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...|+|.|++|+||||+|+.+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3579999999999999999999987543
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.05 E-value=0.0034 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999998875
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.05 E-value=0.0039 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|+|++|+||||+++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998765
No 160
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.04 E-value=0.0043 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+..|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 161
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.03 E-value=0.0043 Score=53.54 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
....|+|.|++|+||||+++.+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999986543
No 162
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.02 E-value=0.0088 Score=52.23 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
...+++|.|++|+|||||++.++......-..++|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 567999999999999999999997664332334444
No 163
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.01 E-value=0.072 Score=50.65 Aligned_cols=44 Identities=30% Similarity=0.335 Sum_probs=34.4
Q ss_pred CcccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|....++++.+.+. ....|.|.|.+|+|||++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 357888888888877665 44456999999999999998887653
No 164
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.01 E-value=0.0043 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+|+|.|++|+||||+++.++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 165
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.99 E-value=0.0051 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.++.|.|++|+||||+|+.++.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998865
No 166
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.98 E-value=0.0069 Score=55.25 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.+.+|+|.|++|+||||||+.+...+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4568999999999999999999887653
No 167
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.97 E-value=0.0082 Score=49.82 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEE
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCF 142 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~ 142 (429)
.++++|.|+.|+|||||+..++..+... +...++
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 4689999999999999999999987654 343333
No 168
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.96 E-value=0.005 Score=57.39 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
...++|+|++|+||||+++.++..+.-.|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34599999999999999999998765433
No 169
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.95 E-value=0.0044 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|.|.|+||+||||.|+.+++++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999875
No 170
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.95 E-value=0.0049 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.+..++|.|++|+|||||++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999776
No 171
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.94 E-value=0.02 Score=49.34 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCR 187 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 187 (429)
...+..++|+-|.||||.+...+.+....-..++.+...... ..+...+...+.... ..........+.....+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~---R~ge~~i~s~~g~~~--~a~~~~~~~~~~~~~~~~ 101 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN---RYSEEDVVSHNGLKV--KAVPVSASKDIFKHITEE 101 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--------------------C--CEEECSSGGGGGGGCCSS
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC---cchHHHHHhhcCCee--EEeecCCHHHHHHHHhcC
Confidence 346788999999999999999999876554444444311110 111122222221111 101112222333334433
Q ss_pred cEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 188 KVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 188 ~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
--+|++|++.- .++++.+ ..+. ..+..||+|.++.
T Consensus 102 ~dvViIDEaQF~~~~~V~~l-~~l~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVV-QVLA--NRGYRVIVAGLDQ 138 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHH-HHHH--HTTCEEEEEECSB
T ss_pred CCEEEEECcccCCHHHHHHH-HHHh--hCCCEEEEEeccc
Confidence 44999999953 3444333 2222 2377899999854
No 172
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.92 E-value=0.0042 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+|+|.|++|+||||+|+.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 173
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.92 E-value=0.0042 Score=53.29 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...|+|.|++|+||||+++.+++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998764
No 174
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.92 E-value=0.011 Score=54.69 Aligned_cols=39 Identities=18% Similarity=0.034 Sum_probs=30.4
Q ss_pred hcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 106 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 106 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
+....++.|.|.+|+||||||.+++.....+...++|++
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 347789999999999999999999987655434455553
No 175
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.89 E-value=0.004 Score=53.40 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+.++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999987653
No 176
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.88 E-value=0.0056 Score=53.31 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...|+|.|++|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 177
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.88 E-value=0.014 Score=51.45 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++.|+|++|+|||||+..++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 67899999999999999999999864
No 178
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.87 E-value=0.0041 Score=58.99 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeE-EEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSC-FLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 186 (429)
....++|+|+.|+|||||++.++..+.......+ +..+..+... ..... +..+..-......-...+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~~~-----~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKKS-----IVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCSSS-----EEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccCce-----EEEeeecCCCHHHHHHHHHHHhhh
Confidence 6678999999999999999999887654322333 2221100000 00000 000000000111122347777777
Q ss_pred CcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChh
Q 048064 187 RKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQ 226 (429)
Q Consensus 187 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 226 (429)
.+-+|++|++.+.+.+..++... ..|..|+.|+-...
T Consensus 209 ~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 209 DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 88899999998776655444332 23555666666543
No 179
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.87 E-value=0.0055 Score=50.70 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|+|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 180
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.87 E-value=0.021 Score=53.48 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+++.|+|++|+||||||.+++......-..++|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 6789999999999999999999987665444455554
No 181
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.86 E-value=0.0055 Score=51.96 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=22.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.|+|.|++|+||||+++.+++++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998743
No 182
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.83 E-value=0.033 Score=53.74 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+++|.++|.+|+||||++..++..+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999988765
No 183
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.83 E-value=0.005 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998754
No 184
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.82 E-value=0.0049 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....|+|.|++|+||||+|+.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999999865
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.82 E-value=0.011 Score=51.04 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...++.|+|++|+|||||+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 667999999999999999999988
No 186
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.81 E-value=0.0055 Score=52.91 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988754
No 187
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.81 E-value=0.0051 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.2
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 188
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.81 E-value=0.01 Score=57.62 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=36.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLS 165 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 165 (429)
..+.++|.|.+|+|||+|+.++++.+.......+.+..+.+. ......+.+.+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER---~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER---TREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCC---SHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccC---cHHHHHHHHhhhc
Confidence 678899999999999999999999875433333333344432 2234455555544
No 189
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.79 E-value=0.0081 Score=55.50 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=30.5
Q ss_pred ccchhhHHHHHHHhhc------CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 92 LVGVESRVEEIQSLLG------AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 92 ~vGR~~~~~~l~~~l~------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
++|-...+..+...+. .+.+++|.|+.|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555555544443 234899999999999999999887665
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.012 Score=51.00 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=30.7
Q ss_pred hhHHHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 96 ESRVEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 96 ~~~~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+...+.+...+. ..+.++|+|.+|+|||||+..++......
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444444443 67789999999999999999999876544
No 191
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.77 E-value=0.024 Score=51.79 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++++|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4589999999999999999999877654
No 192
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.77 E-value=0.0059 Score=52.93 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 193
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.77 E-value=0.0043 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVI 129 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~ 129 (429)
...+++|+|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999963
No 194
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.76 E-value=0.0053 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999987
No 195
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.76 E-value=0.0055 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...|.|.|++|+||||+++.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 196
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.014 Score=51.47 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++.|.|.+|+|||+||.+++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999987654
No 197
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.72 E-value=0.0065 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+.++.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356799999999999999999998763
No 198
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.72 E-value=0.0058 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...|+|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 199
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.71 E-value=0.03 Score=52.03 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=37.3
Q ss_pred hcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 106 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 106 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
+....++.|.|.+|+||||||..++..+...-..++|++ . .-....+...++..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l------Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L------EMSAEQLALRALSD 96 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S------SSCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C------CCCHHHHHHHHHHH
Confidence 336789999999999999999999988765433444443 2 33455555555544
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.71 E-value=0.011 Score=55.67 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+++.|+|++|+||||||.+++......-..++|+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6789999999999999999999987765444555654
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.70 E-value=0.018 Score=50.11 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=28.3
Q ss_pred HHHHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 99 VEEIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 99 ~~~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.+...+. ....|+|+|.+|+|||||+..++......
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444433 56789999999999999999999875443
No 202
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.70 E-value=0.011 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++|+|++|+||||++..++..+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 5799999999999999999999876544
No 203
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.70 E-value=0.019 Score=53.42 Aligned_cols=87 Identities=18% Similarity=0.066 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-CCCCCCHHHHHHHhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-VNVIPHIDLNFRRLSC 186 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~~~l~~ 186 (429)
....++|+|+.|.|||||++.++..+.. ....+.+........ . ... ..+.-- .........+...+..
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~-~-~~~-------~~i~~~~ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF-K-HHK-------NYTQLFFGGNITSADCLKSCLRM 239 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCC-S-SCS-------SEEEEECBTTBCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccc-c-cch-------hEEEEEeCCChhHHHHHHHHhhh
Confidence 6779999999999999999998876533 234455543221100 0 000 000000 0122233347777888
Q ss_pred CcEEEEecCCCCHHHHHH
Q 048064 187 RKVLIVLDDVTCLNQIES 204 (429)
Q Consensus 187 ~~~LlVlDdv~~~~~~~~ 204 (429)
.+-+|++|+....+.++.
T Consensus 240 ~p~ilildE~~~~e~~~~ 257 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDF 257 (330)
T ss_dssp CCSEEEECCCCSTHHHHH
T ss_pred CCCEEEEcCCChHHHHHH
Confidence 889999999987554443
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.69 E-value=0.0067 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 205
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.68 E-value=0.0068 Score=53.79 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998865
No 206
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.67 E-value=0.0062 Score=54.32 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+|+|.|++|+||||+|+.++..+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455799999999999999999988754
No 207
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.67 E-value=0.0052 Score=52.92 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+|+|+|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999988753
No 208
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.66 E-value=0.0072 Score=53.93 Aligned_cols=27 Identities=26% Similarity=0.532 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+|+|.|+.|+||||+++.+++++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998763
No 209
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.65 E-value=0.01 Score=54.75 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSC 141 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 141 (429)
+.++|+|+|-|||||||.+..++.-+...-..+.
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVl 80 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVL 80 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEE
Confidence 7899999999999999999998887765533333
No 210
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.65 E-value=0.0062 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 211
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.64 E-value=0.0042 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.9
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.+|+|.|+.|+||||+++.+...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999987753
No 212
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.63 E-value=0.0061 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+|+|.|+.|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999999875
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.63 E-value=0.01 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999999998853
No 214
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.63 E-value=0.0064 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|+|+.|+|||||++.++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999998755
No 215
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.63 E-value=0.045 Score=53.12 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=37.1
Q ss_pred cCCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHHHHHH
Q 048064 107 GAAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKLLSEV 167 (429)
Q Consensus 107 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (429)
....++.|.|.+|+||||||..++..+... -..++|+. . ..+...+...++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l------E~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L------EMPAAQLTLRMMCSE 252 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S------SSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C------CCCHHHHHHHHHHHH
Confidence 367799999999999999999999987643 22344443 2 234556666655443
No 216
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.62 E-value=0.0072 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|+|||||++.++.-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999998765
No 217
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.61 E-value=0.017 Score=50.38 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+++|+|++|+|||||++.++....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 677999999999999999999987543
No 218
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.60 E-value=0.077 Score=54.17 Aligned_cols=40 Identities=30% Similarity=0.267 Sum_probs=28.3
Q ss_pred hHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 97 SRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 97 ~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+.+...|....+..|+||||+|||+.+.++...+...
T Consensus 193 ~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 193 SQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp HHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3455566666666789999999999997766666554333
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0062 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.1
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.58 E-value=0.011 Score=52.88 Aligned_cols=112 Identities=12% Similarity=0.011 Sum_probs=59.8
Q ss_pred hcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHH-HHHHHh
Q 048064 106 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHID-LNFRRL 184 (429)
Q Consensus 106 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~l~~~l 184 (429)
+....+++|+|+.|+|||||++.++..+...+...+.+....-... ...... +..+. .-......+. .+...+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~-~~~~~~----~v~q~-~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV-FKHKKS----IVNQR-EVGEDTKSFADALRAAL 95 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-CCCSSS----EEEEE-EBTTTBSCHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee-cCCcce----eeeHH-HhCCCHHHHHHHHHHHH
Confidence 4467799999999999999999988866433233333321100000 000000 00000 0000111222 266666
Q ss_pred cCCcEEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCChh
Q 048064 185 SCRKVLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRNKQ 226 (429)
Q Consensus 185 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 226 (429)
...+-+|++|+..+.+....++... ..|.-|++||-+..
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 6677899999997666554444332 23556777776654
No 221
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.55 E-value=0.014 Score=53.22 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 99 VEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 99 ~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
++.+.--+....+++|.|++|+|||||++.++..+...
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 44444233377899999999999999999999877644
No 222
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.54 E-value=0.0084 Score=52.24 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+++|+|+.|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 567999999999999999999988654
No 223
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.54 E-value=0.008 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+|+|+|+.|+||||+++.+.+.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998864
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.53 E-value=0.013 Score=53.59 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...+++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999988763
No 225
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.51 E-value=0.011 Score=48.52 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999999876
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.50 E-value=0.0084 Score=51.83 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+|.|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998764
No 227
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.49 E-value=0.0078 Score=53.58 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...|+|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999999998763
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.49 E-value=0.0089 Score=50.08 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...|+|.|+.|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 229
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.46 E-value=0.0074 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++|+|.||+|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999865
No 230
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.43 E-value=0.01 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
++|+|.|+.|+||||+++.++..+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999988763
No 231
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.42 E-value=0.0095 Score=52.29 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+.+++|.|++|+||||+++.++..+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998763
No 232
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.42 E-value=0.043 Score=53.92 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.++|+|+|.+|+||||++..++..+...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4589999999999999999999877654
No 233
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.42 E-value=0.022 Score=52.76 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...++.|+|++|+||||||.+++.....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhc
Confidence 6789999999999999999999987543
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.40 E-value=0.0067 Score=56.16 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|+|.|+.|+|||||+..+++++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34589999999999999999999865
No 235
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.40 E-value=0.015 Score=50.55 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.|.+.|.||+||||+|..++..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 48899999999999999999987655
No 236
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.40 E-value=0.011 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998863
No 237
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.36 E-value=0.014 Score=53.56 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+++|+|+.|+||||+++.++..+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999876543
No 238
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.35 E-value=0.018 Score=52.15 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...++.|+|++|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 6789999999999999999999986653
No 239
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.35 E-value=0.0073 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHH-HHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIF-NRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~-~~~ 133 (429)
...+++|+|+.|+|||||++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56789999999999999999998 653
No 240
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.34 E-value=0.0085 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.1
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
++|+|+|++|+||||||..++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999875
No 241
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.34 E-value=0.0089 Score=55.12 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+++|.|+.|+|||||++.++..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 567899999999999999999988664
No 242
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.33 E-value=0.0087 Score=54.62 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++++|.|++|+||||||..+++++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4679999999999999999999875
No 243
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.33 E-value=0.01 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 244
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.32 E-value=0.01 Score=51.59 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=22.0
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..|+|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.31 E-value=0.021 Score=47.65 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.++++|.|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 246
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.30 E-value=0.0097 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999998763
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.30 E-value=0.0082 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.196 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+.|.|.|++|+||||||.+++.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46779999999999999999998864
No 248
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.28 E-value=0.01 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 249
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.24 E-value=0.041 Score=53.56 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.6
Q ss_pred hcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcc-eeEEEe
Q 048064 106 LGAAPLLGIWGIGGIGKTTIARVIFNRISRNFK-GSCFLE 144 (429)
Q Consensus 106 l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 144 (429)
+....++.|.|.+|+|||||+..++..+..... .++|+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 336789999999999999999999998764322 344443
No 250
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.23 E-value=0.023 Score=55.37 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
...+++|+|+.|+|||||++.++..+... ...+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 45689999999999999999999877544 334444
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.22 E-value=0.015 Score=53.16 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=26.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcCc--ceeEEEe
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRNF--KGSCFLE 144 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~ 144 (429)
++.|+|++|+|||||+.+++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999998776542 3445543
No 252
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.22 E-value=0.16 Score=44.49 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=28.8
Q ss_pred cchhhHHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 93 VGVESRVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 93 vGR~~~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.=|....+.+..++.. +.+.|+|+.|.|||.+|..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 3344555555555544 348899999999999999888765
No 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.22 E-value=0.0084 Score=54.72 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|.|+.|+||||+|+.+.+.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999988654
No 254
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.21 E-value=0.016 Score=53.70 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.+++|+|+.|+||||+++.++..+...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35689999999999999999999876544
No 255
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.20 E-value=0.012 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.+++|+|+.|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999988664
No 256
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.20 E-value=0.072 Score=62.37 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 048064 102 IQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNF 181 (429)
Q Consensus 102 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 181 (429)
+..++...+.+.++|++|+|||++|+.+...........+-.. ........+..+......
T Consensus 1260 l~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infs--------a~ts~~~~~~~i~~~~~~----------- 1320 (2695)
T 4akg_A 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS--------KDTTTEHILSALHRHTNY----------- 1320 (2695)
T ss_dssp HHHHHHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECC--------TTCCHHHHHHHHHHHBCC-----------
T ss_pred HHHHHHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEee--------cCCCHHHHHHHHHHHhhh-----------
Q ss_pred HHh------------cCCcEEEEecCCCCH--------HHHHHHhccCCCCC------------CCCEEEEEeCChh---
Q 048064 182 RRL------------SCRKVLIVLDDVTCL--------NQIESLVGSLDRLL------------PESRILITTRNKQ--- 226 (429)
Q Consensus 182 ~~l------------~~~~~LlVlDdv~~~--------~~~~~l~~~l~~~~------------~~~~iiiTtR~~~--- 226 (429)
- .+++.++++||++.. ...+.+...+...+ .+..+|.++....
T Consensus 1321 --~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gG 1398 (2695)
T 4akg_A 1321 --VTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPG 1398 (2695)
T ss_dssp --EEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTT
T ss_pred --ccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCC
Q ss_pred ----hhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHh
Q 048064 227 ----VLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYA 276 (429)
Q Consensus 227 ----~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (429)
-....+....+.++..+.++-..+|.......-...+.....+..++..+
T Consensus 1399 R~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1399 RIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred CccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.19 E-value=0.019 Score=54.12 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
...++.|+|++|+||||||.+++......-..++|+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 6779999999999999999999987755444455554
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.16 E-value=0.022 Score=55.24 Aligned_cols=37 Identities=19% Similarity=0.034 Sum_probs=29.4
Q ss_pred cCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 107 GAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 107 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
....++.|.|.+|+||||||.+++.....+-..++|+
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 3678999999999999999999999876553344444
No 259
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.16 E-value=0.011 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.13 E-value=0.019 Score=53.09 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..++++|+|++|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999887654
No 261
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.11 E-value=0.035 Score=52.14 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+|+|+|.+|+|||||+..++..+...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999998876544
No 262
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.08 E-value=0.01 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.1
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
++++|+|+.|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999887654
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.05 E-value=0.019 Score=53.83 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+++|+|+.|+||||+++.++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 35689999999999999999999876543
No 264
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.95 E-value=0.035 Score=51.93 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...++.|+|++|+||||||.+++....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999999998753
No 265
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.94 E-value=0.023 Score=52.14 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeech
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIR 147 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 147 (429)
..++|+|+|-||+||||+|..++..+...-. .+.+.++.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD~D 78 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIGCD 78 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEES
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 5678999999999999999999998776533 33333343
No 266
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.93 E-value=0.021 Score=52.50 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+++|.|+.|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988764
No 267
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.92 E-value=0.013 Score=53.29 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..+|+|.|++|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 268
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.0078 Score=60.78 Aligned_cols=44 Identities=18% Similarity=0.087 Sum_probs=34.7
Q ss_pred CcccchhhHHHHHHHhhcCCC-------------EEEEEcCCCcchHHHHHHHHHHh
Q 048064 90 NELVGVESRVEEIQSLLGAAP-------------LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 90 ~~~vGR~~~~~~l~~~l~~~~-------------~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..++|.+...+.+...+.+.. .+.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 568999987777655554332 69999999999999999988754
No 269
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.89 E-value=0.014 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.+|.|.|++|+||||+|+.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 270
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.88 E-value=0.027 Score=50.20 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999998776
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.87 E-value=0.014 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 577999999999999999998875
No 272
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.85 E-value=0.026 Score=53.31 Aligned_cols=26 Identities=23% Similarity=0.136 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....++|+|++|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 66799999999999999999999764
No 273
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.84 E-value=0.043 Score=52.67 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..+.++|.|.+|+|||+|+.++++....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 6677899999999999999999987654
No 274
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.83 E-value=0.016 Score=54.99 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.++|+|.|++|+||||||..++.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 45789999999999999999998763
No 275
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.82 E-value=0.025 Score=51.75 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
....++|+|+.|.|||||++.++.-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 77899999999999999999988765
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.79 E-value=0.015 Score=50.11 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.0
Q ss_pred cCCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 107 GAAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 107 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....+++|.|+.|+|||||++.++.-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999998865
No 277
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.79 E-value=0.016 Score=56.03 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
+++|+|+|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999877644
No 278
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.79 E-value=0.014 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6679999999999999999988763
No 279
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.74 E-value=0.015 Score=56.06 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998764
No 280
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.71 E-value=0.02 Score=50.19 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
....|+|.|++|+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999998765
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.70 E-value=0.016 Score=51.10 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|+|+.|+|||||++.++.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67799999999999999999988643
No 282
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.69 E-value=0.03 Score=51.16 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++|+|++|+||||++..++..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999877654
No 283
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.67 E-value=0.063 Score=53.02 Aligned_cols=52 Identities=10% Similarity=0.007 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKLLSE 166 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (429)
...++.|.|.+|+||||||.+++...... -..++|++ . ......+...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~------E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-L------EESVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-S------SSCHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-c------cCCHHHHHHHHHHH
Confidence 56789999999999999999999987654 33445543 2 23345555555443
No 284
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.67 E-value=0.022 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...++.|+|++|+|||||+..++....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999999998763
No 285
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.67 E-value=0.019 Score=50.72 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
. .+++|.|+.|+|||||.+.++.-
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCC
Confidence 6 88999999999999999998863
No 286
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.62 E-value=0.045 Score=52.82 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc---ceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF---KGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHI 177 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~ 177 (429)
..+.++|.|.+|+|||+|+..+++....+. ...+.+..+.+.. .....+.+.+...-... ....+..
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~---~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~ 227 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN---EEAQYFMSDFEKTGALERAVVFLNLADDPAV 227 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH---HHHHHHHHHHHHHSGGGGEEEEEEETTSCHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc---HHHHHHHHHHHhccCccceEEEEECCCCCHH
Confidence 677889999999999999999998764322 1334444344322 22444555554321111 0111111
Q ss_pred HH---------HHHHh---cCCcEEEEecCC
Q 048064 178 DL---------NFRRL---SCRKVLIVLDDV 196 (429)
Q Consensus 178 ~~---------l~~~l---~~~~~LlVlDdv 196 (429)
.. +.+++ .++.+||++||+
T Consensus 228 ~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 228 ERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11 33344 468999999997
No 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.61 E-value=0.024 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998865
No 288
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.58 E-value=0.052 Score=51.77 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++.|+|++|+|||||+..++-..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 67899999999999999999887543
No 289
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.038 Score=46.49 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998864
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.57 E-value=0.022 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6779999999999999999998873
No 291
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.54 E-value=0.018 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||++.++-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 678999999999999999998876
No 292
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.53 E-value=0.018 Score=51.59 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6779999999999999999988763
No 293
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.51 E-value=0.033 Score=49.94 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=27.0
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI 146 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 146 (429)
++|+|.|-||+||||+|..++..+...-. .+.+.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~-~VlliD~ 37 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGK-TIMVVGC 37 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTC-CEEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCC-cEEEEcC
Confidence 46788999999999999999998875533 3333334
No 294
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.50 E-value=0.017 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||++.++.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6678999999999999999998764
No 295
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.49 E-value=0.019 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|.|||||++.++.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999999988763
No 296
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.48 E-value=0.019 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 667999999999999999998876
No 297
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.48 E-value=0.02 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|.|||||.+.++.-+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67799999999999999999988753
No 298
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.44 E-value=0.02 Score=51.19 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6679999999999999999988763
No 299
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.44 E-value=0.024 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6779999999999999999998874
No 300
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.43 E-value=0.057 Score=51.82 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+.++|.|.+|+|||+|+.++++...
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 677889999999999999999988754
No 301
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.43 E-value=0.02 Score=50.81 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||++.++.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999988763
No 302
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.43 E-value=0.046 Score=51.06 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...+++|+|.+|+|||||+..++..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999876643
No 303
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.021 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
+..|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998764
No 304
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.40 E-value=0.022 Score=48.15 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.++|+|++|+|||||.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998874
No 305
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.39 E-value=0.021 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||++.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 6779999999999999999988763
No 306
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.37 E-value=0.037 Score=50.28 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeech
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIR 147 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 147 (429)
.++|+|.|-||+||||+|..++..+...- ..+.+.++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G-~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG-KKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC-CeEEEEecC
Confidence 35788899999999999999999876542 334443343
No 307
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.35 E-value=0.06 Score=51.64 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHHhhc-CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 101 EIQSLLG-AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 101 ~l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
.+.+.+. ...+++|+|+.|+|||||.+.++..+...
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3444444 56689999999999999999999876543
No 308
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.34 E-value=0.047 Score=50.88 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...+++|.|++|+|||||.+.++..+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 6778999999999999999999876543
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.33 E-value=0.022 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6779999999999999999998764
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.31 E-value=0.024 Score=48.27 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.++|.|++|+|||||.+.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.30 E-value=0.046 Score=47.23 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...|+|.|+.|+||||+++.+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999988654
No 312
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.28 E-value=0.023 Score=50.76 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6679999999999999999998763
No 313
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.24 E-value=0.02 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|+|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999999876
No 314
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.24 E-value=0.023 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6779999999999999999988763
No 315
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.24 E-value=0.054 Score=50.06 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...++.|+|++|+|||+||.+++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 66789999999999999999999764
No 316
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.23 E-value=0.024 Score=50.41 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|+|||||.+.++.-+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 56789999999999999999987654
No 317
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.16 E-value=0.028 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.9
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999876
No 318
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.15 E-value=0.025 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6779999999999999999998864
No 319
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.14 E-value=0.028 Score=46.50 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..+-+.|.|++|+||||+|.++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4567999999999999999999885
No 320
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.14 E-value=0.021 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
-|+|+|.+|+|||||...++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999876
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.13 E-value=0.025 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999988763
No 322
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.10 E-value=0.026 Score=51.11 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6779999999999999999988764
No 323
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.09 E-value=0.029 Score=45.53 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999998864
No 324
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.08 E-value=0.034 Score=47.65 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|.|+.|+||||+++.+++++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999874
No 325
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.08 E-value=0.13 Score=43.65 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=26.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
.|+|-|.-|+||||.++.+++.+......+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887664444443
No 326
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.06 E-value=0.045 Score=54.24 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
...+|.++|++|.||||+|+.++..+.-.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 456899999999999999999998765433
No 327
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.04 E-value=0.55 Score=46.56 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCc---ceeEEEeech
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNF---KGSCFLENIR 147 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~ 147 (429)
.+.+.|.|.+|+|||++++.+...+...+ ...+++.+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 46799999999999999999888765433 2456665544
No 328
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.03 E-value=0.065 Score=46.60 Aligned_cols=107 Identities=8% Similarity=-0.006 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNFRRLSCRK 188 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 188 (429)
..+..++|+-|.||||.+...+.+....-..++.+..... . ..+ ..+...+...... .......++.... +.-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~-Ryg-~~i~sr~G~~~~a--~~i~~~~di~~~~-~~~ 91 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--T-RYS-SSFCTHDRNTMEA--LPACLLRDVAQEA-LGV 91 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--C-CC------------CEE--EEESSGGGGHHHH-TTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--c-cch-HHHHhhcCCeeEE--EecCCHHHHHHHh-ccC
Confidence 4678999999999999988888877655443443332211 1 222 3333333111110 0011222333333 233
Q ss_pred EEEEecCCCCHHHHHHHhccCCCCCCCCEEEEEeCC
Q 048064 189 VLIVLDDVTCLNQIESLVGSLDRLLPESRILITTRN 224 (429)
Q Consensus 189 ~LlVlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~ 224 (429)
-+|++|++.-.....++...+.. .|..||+|.++
T Consensus 92 dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 92 AVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp SEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCS
T ss_pred CEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecc
Confidence 49999998522224444444332 57789999998
No 329
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.02 E-value=0.052 Score=46.59 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=25.0
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHhhcCcc
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRISRNFK 138 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~~~~f~ 138 (429)
..|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999998865544
No 330
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.01 E-value=0.03 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
+.+|+|.|+.|+||||+++.++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3479999999999999999998865
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.98 E-value=0.053 Score=52.02 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++|+|++|+||||++..++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999887654
No 332
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.96 E-value=0.077 Score=51.65 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCcchHHHHH-HHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIAR-VIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~ 134 (429)
..+.++|.|.+|+|||+||. .++++..
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHh
Confidence 77889999999999999954 6666654
No 333
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.93 E-value=0.067 Score=49.99 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh--cCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS--RNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~ 143 (429)
..+++.+.|.||+||||+|..++..+. ..-..+..+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vlli 54 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLI 54 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 468999999999999999999999887 443333333
No 334
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.92 E-value=0.036 Score=46.38 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+.+|+|+.|+|||||+..++.-+
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999988754
No 335
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.91 E-value=0.033 Score=45.50 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998874
No 336
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.88 E-value=0.031 Score=45.35 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999998864
No 337
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.87 E-value=0.057 Score=46.38 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC-cceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN-FKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVN--VIPHIDLNFRRL 184 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~~l 184 (429)
...+..|+|+-|.||||.+...+++.... ....++-..... ......+.+.++.... ......++...+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~--------R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i 98 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDD--------RYHKEKVVSHNGNAIEAINISKASEIMTHD 98 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------------CBTTBCCEEEEESSGGGGGGSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCC--------cchhhhHHHhcCCceeeEEeCCHHHHHHHH
Confidence 46788999999999999665556655443 333333221211 1111123333332211 122233344444
Q ss_pred cCCcEEEEecCCC--CHHHHHHHhccCCCCCCCCEEEEEe
Q 048064 185 SCRKVLIVLDDVT--CLNQIESLVGSLDRLLPESRILITT 222 (429)
Q Consensus 185 ~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTt 222 (429)
.++...|++|++. +.++.+.+.... ..|..||+..
T Consensus 99 ~~~~dvV~IDEaQFf~~~~v~~l~~la---~~gi~Vi~~G 135 (219)
T 3e2i_A 99 LTNVDVIGIDEVQFFDDEIVSIVEKLS---ADGHRVIVAG 135 (219)
T ss_dssp CTTCSEEEECCGGGSCTHHHHHHHHHH---HTTCEEEEEE
T ss_pred hcCCCEEEEechhcCCHHHHHHHHHHH---HCCCEEEEee
Confidence 5566799999985 333333333221 1366777754
No 338
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.83 E-value=0.026 Score=51.74 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....++|+|+.|.|||||++.++.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 678999999999999999998876
No 339
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.82 E-value=0.064 Score=47.11 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
....|+|.|+.|+||||+++.+++.+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999987654
No 340
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.80 E-value=0.052 Score=47.84 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=25.8
Q ss_pred EEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeec
Q 048064 112 LGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENI 146 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 146 (429)
|+|.|-||+||||+|..++..+...-. .+.+.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~-~VlliD~ 36 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYD-KIYAVDG 36 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCS-CEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCC-eEEEEeC
Confidence 667999999999999999998876543 3444334
No 341
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.77 E-value=0.063 Score=48.87 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=27.4
Q ss_pred HHHHHHhhc-CCCEEEEEc---CCCcchHHHHHHHHHHhhcC
Q 048064 99 VEEIQSLLG-AAPLLGIWG---IGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 99 ~~~l~~~l~-~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~ 136 (429)
+.++.+.+. ..++++|.+ -||+||||+|..++..+...
T Consensus 23 ~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 23 LEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp HHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 344444443 456777775 99999999999999887654
No 342
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.77 E-value=0.034 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 343
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.76 E-value=0.039 Score=48.17 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.7
Q ss_pred CEEEEEcCCCcchHHHHHHHHHHh
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
-.++|.|++|+||||+|+.+++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999876
No 344
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.72 E-value=0.15 Score=49.55 Aligned_cols=26 Identities=38% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCcchHHHHH-HHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIAR-VIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~-~~~~~~ 133 (429)
..+.++|.|.+|+|||+||. .++++.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 77889999999999999965 666654
No 345
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.71 E-value=0.032 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999863
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.70 E-value=0.037 Score=51.82 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 567899999999999999999886
No 347
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.68 E-value=0.035 Score=47.40 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..-.|+|+|.+|+|||||...+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999988863
No 348
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.65 E-value=0.043 Score=47.93 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
....|.|.|+.|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45689999999999999999999987654
No 349
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.63 E-value=0.042 Score=51.72 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
....++|+|+.|+|||||++.++..+.. ....+.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 7789999999999999999999876532 23344444
No 350
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.62 E-value=0.037 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999988763
No 351
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.60 E-value=0.04 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999988864
No 352
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.59 E-value=0.04 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|.|.+|+|||||...+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 353
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.59 E-value=0.43 Score=48.40 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 98 RVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 98 ~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+.+...+ ..+.+.|+|++|+|||+++.++...+.......+.++
T Consensus 185 Q~~av~~~l-~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 185 QVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp HHHHHHHHH-TCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred HHHHHHHHh-cCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 333444444 4568899999999999998888877654333344443
No 354
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.58 E-value=0.039 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 355
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.55 E-value=0.074 Score=52.25 Aligned_cols=44 Identities=2% Similarity=-0.031 Sum_probs=32.9
Q ss_pred ccchhhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 92 LVGVESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 92 ~vGR~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...|.+..+.+.+... ...+|.+.|++|+||||+|+.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3344444555666552 4468999999999999999999999864
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.55 E-value=0.043 Score=51.32 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 678999999999999999999886
No 357
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.52 E-value=0.042 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 358
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.52 E-value=0.037 Score=49.57 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
..+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999988654
No 359
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.50 E-value=0.036 Score=50.41 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=35.3
Q ss_pred HHHHhcCCcEEEEecCCC---CHHHHHHHhcc-CCCCCCCCEEEEEeCChhhhhhcCCCeEEEc
Q 048064 180 NFRRLSCRKVLIVLDDVT---CLNQIESLVGS-LDRLLPESRILITTRNKQVLRNCHINQIYEM 239 (429)
Q Consensus 180 l~~~l~~~~~LlVlDdv~---~~~~~~~l~~~-l~~~~~~~~iiiTtR~~~~~~~~~~~~~~~l 239 (429)
+.+.+-.++-+++||+-- +......+... +.....+..||++|.+...+.. ..+++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~--~d~i~~l 231 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK--ADKILIL 231 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH--SSEEEEE
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 666677788899999984 33444444443 2233346678888887765543 3444444
No 360
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.50 E-value=0.043 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998873
No 361
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.49 E-value=0.045 Score=44.49 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|.|.+|+|||||...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.47 E-value=0.047 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....|+|+|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999876
No 363
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.47 E-value=0.051 Score=46.76 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....|+|+|++|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998875
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.45 E-value=0.026 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.049 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....|+|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999988765
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.45 E-value=0.046 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 567899999999999999999886
No 366
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.44 E-value=0.046 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 567899999999999999999886
No 367
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.44 E-value=0.044 Score=44.73 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998864
No 368
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.44 E-value=0.044 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999998874
No 369
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.43 E-value=0.02 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
....|+|.|+.|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999887653
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.43 E-value=0.071 Score=49.89 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..+|+|+|++|+|||||...+......
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999876543
No 371
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.41 E-value=0.069 Score=52.23 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
....|.++|++|+||||+++.++..+...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 455789999999999999999998765444
No 372
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.40 E-value=0.047 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 567899999999999999999886
No 373
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.39 E-value=0.094 Score=48.68 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
..+++.+.|-||+||||+|..++..+...-..++.+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vlli 50 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL 50 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 467889999999999999999999887654444444
No 374
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.39 E-value=0.054 Score=47.10 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4668999999999999999999998765
No 375
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.38 E-value=0.071 Score=53.05 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
...+++|.|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 5678999999999999999999998754
No 376
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.37 E-value=0.043 Score=44.88 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.8
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999998864
No 377
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.37 E-value=0.04 Score=45.07 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
.|+|+|.+|+|||||...+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999886
No 378
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.36 E-value=0.038 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999864
No 379
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.35 E-value=0.043 Score=45.88 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||+..+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 380
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.34 E-value=0.088 Score=45.46 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...|.|.|+.|+||||+++.+++.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4679999999999999999999987654
No 381
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.33 E-value=0.07 Score=45.43 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=26.0
Q ss_pred CEEEEE-cCCCcchHHHHHHHHHHhhcCcceeEEEeec
Q 048064 110 PLLGIW-GIGGIGKTTIARVIFNRISRNFKGSCFLENI 146 (429)
Q Consensus 110 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 146 (429)
++|+|+ +-||+||||+|..++..+...-. .+.+.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~-~vlliD~ 38 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGY-NIAVVDT 38 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEEC
Confidence 467776 68999999999999998876433 3334334
No 382
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.33 E-value=0.042 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 5678999999999999999998863
No 383
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.33 E-value=0.046 Score=45.25 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998864
No 384
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.32 E-value=0.046 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998863
No 385
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.32 E-value=0.046 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999888764
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.31 E-value=0.049 Score=51.36 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 5678999999999999999998863
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.30 E-value=0.045 Score=44.74 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998863
No 388
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.30 E-value=0.05 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|.|||||.+.++-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 678999999999999999998876
No 389
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.26 E-value=0.051 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 567999999999999999999886
No 390
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.25 E-value=0.049 Score=44.43 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998863
No 391
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.24 E-value=0.078 Score=48.51 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcchHHHHHHHH
Q 048064 99 VEEIQSLLGAAPLLGIWGIGGIGKTTIARVIF 130 (429)
Q Consensus 99 ~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~ 130 (429)
+++|.+.+ ...+++|.|++|+|||||.+.+.
T Consensus 156 i~~L~~~l-~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYL-EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHT-TTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhc-cCcEEEEECCCCCCHHHHHHHHH
Confidence 44555544 35789999999999999999988
No 392
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.22 E-value=0.17 Score=49.15 Aligned_cols=85 Identities=25% Similarity=0.176 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCcchHHHHH-HHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcC-------CCCCCCHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIAR-VIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKD-------VNVIPHIDL 179 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~ 179 (429)
..+.++|.|.+|+|||+||. .++++.. .+..+.+..+.+. ......+.+.+...-... ....+....
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~IGeR---~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVAIGQK---KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEEESCC---HHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEEcCCC---cHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 77889999999999999965 6666542 2333344434432 123444444444321111 111111111
Q ss_pred ---------HHHHh--cCCcEEEEecCCC
Q 048064 180 ---------NFRRL--SCRKVLIVLDDVT 197 (429)
Q Consensus 180 ---------l~~~l--~~~~~LlVlDdv~ 197 (429)
+-+++ .++.+||++||+.
T Consensus 249 ~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 22233 4689999999984
No 393
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.21 E-value=0.11 Score=48.89 Aligned_cols=36 Identities=31% Similarity=0.239 Sum_probs=29.0
Q ss_pred HHHhhc---CCCEEEEEcCCCcchHHHHHHHHHHhhcCc
Q 048064 102 IQSLLG---AAPLLGIWGIGGIGKTTIARVIFNRISRNF 137 (429)
Q Consensus 102 l~~~l~---~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f 137 (429)
..+.+. ..+.++|.|.+|+|||+|+.++++.+..++
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 444554 778999999999999999999999876433
No 394
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.16 E-value=0.051 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998763
No 395
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.16 E-value=0.043 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998764
No 396
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.16 E-value=0.065 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....++|.|+.|+|||||.+.++.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 667999999999999999999987
No 397
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.14 E-value=0.049 Score=44.99 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999998863
No 398
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.13 E-value=0.051 Score=45.62 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999988864
No 399
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.12 E-value=0.066 Score=46.32 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
....|.|.|+.|+||||+++.+++.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999998865
No 400
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.11 E-value=0.043 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998874
No 401
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.11 E-value=0.049 Score=45.03 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998874
No 402
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.09 E-value=0.053 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998874
No 403
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.08 E-value=0.04 Score=51.61 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
...+++|.|+.|+|||||.+.++-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 567999999999999999999886
No 404
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.08 E-value=0.054 Score=44.33 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998763
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.07 E-value=0.11 Score=48.56 Aligned_cols=34 Identities=35% Similarity=0.550 Sum_probs=27.9
Q ss_pred HHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 101 EIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 101 ~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|...+. ....++|.|+.|+|||||.+.++....
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444444 788999999999999999999998764
No 406
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.07 E-value=0.05 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998863
No 407
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.07 E-value=0.053 Score=45.81 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
-|+|+|.+|+|||||...+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999875
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.98 E-value=0.056 Score=45.27 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998863
No 409
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.97 E-value=0.22 Score=48.25 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCcchHHHHH-HHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIAR-VIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~-~~~~~ 132 (429)
..+.++|.|.+|+|||+|+. .++++
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh
Confidence 67889999999999999964 56554
No 410
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.95 E-value=0.31 Score=47.40 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999998875
No 411
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.95 E-value=0.057 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.|+|+|.+|+|||||...+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998864
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.94 E-value=0.057 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
--|+|+|.+|+|||||...+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998874
No 413
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.91 E-value=0.052 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...++|+|+.|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999987653
No 414
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.90 E-value=0.058 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 415
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.88 E-value=0.14 Score=50.72 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
...+++|.|++|+|||||++.++......
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 67899999999999999999999876543
No 416
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.88 E-value=0.085 Score=48.80 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
.+++...|.||+||||+|..++..+.+.-..+..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 48 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVI 48 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEE
Confidence 35677889999999999999999887663333333
No 417
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.88 E-value=0.056 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998863
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.86 E-value=0.06 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998863
No 419
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.85 E-value=0.056 Score=45.02 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.|+|+|.+|+|||||...+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998864
No 420
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.84 E-value=0.06 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....++|.|+.|+|||||.+.++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 678999999999999999999886
No 421
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=92.83 E-value=0.18 Score=45.27 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=32.6
Q ss_pred hHHHHHHHhhc------CCCEEEEEcC-CCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 97 SRVEEIQSLLG------AAPLLGIWGI-GGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 97 ~~~~~l~~~l~------~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
+.++.|...+. ..++|+|+|. ||+||||+|..++..+...-..++.+
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 34455554443 5678999875 89999999999999887654344444
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.81 E-value=0.061 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999998874
No 423
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.80 E-value=0.061 Score=44.51 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 424
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.79 E-value=0.053 Score=45.31 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998863
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.77 E-value=0.062 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999998863
No 426
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.76 E-value=0.063 Score=44.48 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=20.0
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999988763
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.74 E-value=0.064 Score=44.35 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 428
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.71 E-value=0.066 Score=53.91 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
...+|.|.|++|+||||+|+.+++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999874
No 429
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.064 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999998874
No 430
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.69 E-value=0.058 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHh
Q 048064 111 LLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
-|+|+|.+|+|||||++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999997666543
No 431
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.65 E-value=0.07 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.091 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
....++|+|+.|+||||+++.+...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 666799999999999999999887653
No 432
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.64 E-value=0.23 Score=52.60 Aligned_cols=23 Identities=26% Similarity=-0.009 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCcchHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIF 130 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~ 130 (429)
...+++|.|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999999884
No 433
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.63 E-value=0.049 Score=46.18 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=18.9
Q ss_pred CEEEEEcCCCcchHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIF 130 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~ 130 (429)
-.|+|+|.+|+|||||...+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 434
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.63 E-value=0.056 Score=45.18 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.4
Q ss_pred EEEEcCCCcchHHHHHHHHHH
Q 048064 112 LGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 112 v~I~G~~GiGKTtLa~~~~~~ 132 (429)
+.|.|.+|+||||+|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 435
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.61 E-value=0.063 Score=44.50 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.8
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
..|+|+|.+|+|||||...+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3589999999999999999885
No 436
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.61 E-value=0.066 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.2
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999998863
No 437
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.067 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.224 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999998874
No 438
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.60 E-value=0.06 Score=44.46 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
--|+|+|.+|+|||||...+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998875
No 439
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.59 E-value=0.066 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.59 E-value=0.068 Score=44.81 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.|+|+|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 441
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.58 E-value=0.063 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.|+|+|.+|+|||||+..+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.58 E-value=0.057 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|+|.+|+|||||...+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999988754
No 443
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.57 E-value=0.11 Score=43.35 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHhhc-CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 102 IQSLLG-AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 102 l~~~l~-~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
+.+++. ....|+|+|.+|+|||||...+..
T Consensus 8 ~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 8 IWRLFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHhcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 334333 455799999999999999999885
No 444
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.57 E-value=0.18 Score=45.95 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCEEEEEcC-CCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGI-GGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
..++|.|+|. ||+||||+|..++..+...-..++.+
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 5688999885 89999999999999877653334444
No 445
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.56 E-value=0.064 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
--|+|+|.+|+|||||+..+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 446
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.56 E-value=0.072 Score=46.37 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+|+|.|+.|+||||+|+.+++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999999873
No 447
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.53 E-value=0.068 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998874
No 448
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.52 E-value=0.07 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
--|+|+|.+|+|||||...+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998864
No 449
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.52 E-value=0.16 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999987764
No 450
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.51 E-value=0.13 Score=43.48 Aligned_cols=106 Identities=12% Similarity=0.049 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe-echhhhhhcCCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHhc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE-NIREESQKAGGLAFLQQKLLSEVLKD--VNVIPHIDLNFRRLS 185 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~l~~~l~ 185 (429)
.++..++|+.|.||||.+...+++...+-..+..+. ...... +. ..+...++.. .........+...+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~----~~----~~i~s~~g~~~~a~~~~~~~~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRY----SK----EDVVSHMGEKEQAVAIKNSREILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC---------------CEEECTTSCEEECEEESSSTHHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccc----hH----HHHHhhcCCceeeEeeCCHHHHHHHHh
Confidence 468899999999999999999998754433333332 111100 00 0111111100 001111234555554
Q ss_pred CCcEEEEecCCCC--HHHHHHHhccCCCCCCCCEEEEEeCCh
Q 048064 186 CRKVLIVLDDVTC--LNQIESLVGSLDRLLPESRILITTRNK 225 (429)
Q Consensus 186 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~ 225 (429)
+.--+|++|++.. .++++.+.. +. ..+..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~-l~--~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNK-IA--ESGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH-HH--hCCCEEEEEeccc
Confidence 4334999999853 334443322 22 2377899998854
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.48 E-value=0.072 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998863
No 452
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.067 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.|+|+|.+|+|||||...+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 453
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.45 E-value=0.072 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998874
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.43 E-value=0.072 Score=45.67 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999998874
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.42 E-value=0.068 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.0
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
-|+|+|.+|+|||||...+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998873
No 456
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.41 E-value=0.12 Score=48.23 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..+++.+.|.||+||||+|..++..+...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 44566778999999999999999987665
No 457
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.40 E-value=0.09 Score=50.33 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCE--EEEEcCCCcchHHHHHHHHHH
Q 048064 99 VEEIQSLLGAAPL--LGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 99 ~~~l~~~l~~~~~--v~I~G~~GiGKTtLa~~~~~~ 132 (429)
++.+.--+....+ ++|+|+.|+|||||.+.++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4444443446667 999999999999999998763
No 458
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.39 E-value=0.08 Score=49.51 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 99 VEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 99 ~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
++.|...+ ...+++|+|++|+|||||.+.+....
T Consensus 206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccc
Confidence 33444433 46789999999999999999887543
No 459
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.39 E-value=0.069 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..-|+|+|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 346899999999999999998874
No 460
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.38 E-value=0.11 Score=58.83 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+.+.|+|++|+|||+||.+++.....+-..+.|+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 7889999999999999999999998766645556654
No 461
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.34 E-value=0.067 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998864
No 462
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.34 E-value=0.057 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....|+|+|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999998875
No 463
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.33 E-value=0.076 Score=44.48 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998763
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.33 E-value=0.076 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456999999999999999998763
No 465
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.32 E-value=0.077 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.|+|+|.+|+|||||...+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999998874
No 466
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.32 E-value=0.084 Score=42.68 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+.+|+|+.|.||||+..+++.-+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999887654
No 467
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.32 E-value=0.076 Score=45.97 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.0
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
-|+|+|.+|+|||+|+..+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 388999999999999999876
No 468
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.29 E-value=0.22 Score=49.50 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.5
Q ss_pred hhHHHHHHHhhc----CCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 96 ESRVEEIQSLLG----AAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 96 ~~~~~~l~~~l~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
....+.+.+... ...+|.+.|++|+||||+|+.+...+..
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 334444555442 3568999999999999999999987653
No 469
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.079 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.|+|+|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998874
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.25 E-value=0.11 Score=51.46 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHH-hhcCCCEEEEEcCCCcchHHHHHHHH-HHhhcCcceeEEEe
Q 048064 99 VEEIQS-LLGAAPLLGIWGIGGIGKTTIARVIF-NRISRNFKGSCFLE 144 (429)
Q Consensus 99 ~~~l~~-~l~~~~~v~I~G~~GiGKTtLa~~~~-~~~~~~f~~~~~~~ 144 (429)
++.+.- -+....+++|.|++|+|||||++.++ .-+...-...+++.
T Consensus 28 Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 28 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444433 33378899999999999999999963 33332223455554
No 471
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.23 E-value=0.074 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.9
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
--|+|+|.+|+|||||...+..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3589999999999999999886
No 472
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.20 E-value=0.17 Score=46.84 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
..+++.+.|.||+||||+|..++..+.+.-..+..+
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 356777899999999999999999887653333333
No 473
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.19 E-value=0.16 Score=44.56 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCEEEEE-cCCCcchHHHHHHHHHHhhcCcceeEEEeech
Q 048064 109 APLLGIW-GIGGIGKTTIARVIFNRISRNFKGSCFLENIR 147 (429)
Q Consensus 109 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 147 (429)
.++|+|+ +-||+||||+|..++..+.......+.+.++.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDIS 43 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECC
Confidence 4567666 57999999999999998876623344444443
No 474
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.17 E-value=0.084 Score=52.85 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
..+|.|.|++|+||||+|+.+.+.+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 457999999999999999999998753
No 475
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.17 E-value=0.042 Score=46.99 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
....++|+|++|+|||||.+.++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 455799999999999999987764
No 476
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.14 E-value=0.81 Score=47.73 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 98 RVEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 98 ~~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
..+.+...+ ..+.+.|+|++|+|||+++.++...+.
T Consensus 365 Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 365 QSNAVSHVL-QRPLSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp HHHHHHHHT-TCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 333444433 466889999999999998888776654
No 477
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.14 E-value=0.12 Score=49.94 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=27.4
Q ss_pred HHHHhhc--CCCEEEEEcCCCcchHHHHHHHHHHhh
Q 048064 101 EIQSLLG--AAPLLGIWGIGGIGKTTIARVIFNRIS 134 (429)
Q Consensus 101 ~l~~~l~--~~~~v~I~G~~GiGKTtLa~~~~~~~~ 134 (429)
.|...+. ....++|.|+.|+|||||++.++....
T Consensus 147 vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 147 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3444443 788999999999999999999988754
No 478
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.13 E-value=0.061 Score=49.64 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
.++++|.|+.|.|||||.+.+....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999988653
No 479
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.13 E-value=0.41 Score=56.89 Aligned_cols=154 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEeechhhhhhcCCHHHHHHHHHHHHhcCCCCCCCHHHHH
Q 048064 102 IQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLENIREESQKAGGLAFLQQKLLSEVLKDVNVIPHIDLNF 181 (429)
Q Consensus 102 l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 181 (429)
+..++...+.|.++|++|+|||.++..+...... ..+...+++. ..+...++..+-..+...
T Consensus 1297 l~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~---~~~~~infS~----~Tta~~l~~~~e~~~e~~----------- 1358 (3245)
T 3vkg_A 1297 LHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPD---FEVVSLNFSS----ATTPELLLKTFDHHCEYK----------- 1358 (3245)
T ss_dssp HHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTT---EEEEEECCCT----TCCHHHHHHHHHHHEEEE-----------
T ss_pred HHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCC---CceEEEEeeC----CCCHHHHHHHHhhcceEE-----------
Q ss_pred HHhc-------------CCcEEEEecCCCCHH--------HHHHHhccCCCCC------------CCCEEEEE-------
Q 048064 182 RRLS-------------CRKVLIVLDDVTCLN--------QIESLVGSLDRLL------------PESRILIT------- 221 (429)
Q Consensus 182 ~~l~-------------~~~~LlVlDdv~~~~--------~~~~l~~~l~~~~------------~~~~iiiT------- 221 (429)
. +++.++++||+..+. .++-+...+...+ .+..+|.|
T Consensus 1359 ---~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~g 1435 (3245)
T 3vkg_A 1359 ---RTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDA 1435 (3245)
T ss_dssp ---ECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTST
T ss_pred ---eccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCC
Q ss_pred eCChhhhhhcCCCeEEEcCCCCHHHHHHHHHHhhhcCCCCChhHHHHHHHHHHHh
Q 048064 222 TRNKQVLRNCHINQIYEMKGLGDDHALELFIRHAFRQNLVDVDYKELSDKVINYA 276 (429)
Q Consensus 222 tR~~~~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~i~~~~ 276 (429)
.|..--........++.++..+.++-..+|......-....+.....+..+++.+
T Consensus 1436 Gr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~at 1490 (3245)
T 3vkg_A 1436 GRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAM 1490 (3245)
T ss_dssp TCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHH
T ss_pred CCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
No 480
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.08 E-value=0.064 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~ 131 (429)
-|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 359999999999999999764
No 481
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.02 E-value=0.12 Score=48.75 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.7
Q ss_pred CCCEEEEEc-CCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 108 AAPLLGIWG-IGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 108 ~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
..++|+|+| -||+||||+|..++..+...-..++.+
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 457788875 999999999999999876653333333
No 482
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.02 E-value=0.092 Score=48.03 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..+.+.|.|++|+||||+|.++..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3668999999999999999999875
No 483
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.01 E-value=0.082 Score=45.00 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998863
No 484
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.98 E-value=0.066 Score=44.66 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
....|+|.|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998763
No 485
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.079 Score=51.53 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHh
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRI 133 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 133 (429)
...+++|.|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 67899999999999999999988754
No 486
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.95 E-value=0.27 Score=44.51 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=32.6
Q ss_pred hHHHHHHHhhc------CCCEEEEEc-CCCcchHHHHHHHHHHhhcCcceeEEE
Q 048064 97 SRVEEIQSLLG------AAPLLGIWG-IGGIGKTTIARVIFNRISRNFKGSCFL 143 (429)
Q Consensus 97 ~~~~~l~~~l~------~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~f~~~~~~ 143 (429)
+.++.|...+. ..++|+|+| .||+||||+|..++..+...-..++.+
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 44555555443 567888877 589999999999999887654334444
No 487
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.95 E-value=0.13 Score=57.55 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=0.0
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEEEe
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCFLE 144 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 144 (429)
..+++.|+|++|+|||+||++++.+-..+-...+|+.
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~ 1117 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1117 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEE
No 488
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.92 E-value=0.09 Score=44.88 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998863
No 489
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.92 E-value=0.16 Score=51.24 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCcchHHHHHHHHHHhhcCcceeEE
Q 048064 108 AAPLLGIWGIGGIGKTTIARVIFNRISRNFKGSCF 142 (429)
Q Consensus 108 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~ 142 (429)
..+++.+.|.||+||||+|..++..+.+.-..+..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLl 41 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLL 41 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEE
Confidence 46789999999999999999999887655333333
No 490
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.89 E-value=0.07 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.222 Sum_probs=20.4
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-.|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998863
No 491
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.88 E-value=0.087 Score=44.57 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999988753
No 492
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=91.87 E-value=0.15 Score=45.36 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=27.7
Q ss_pred CCCEEEEE-cCCCcchHHHHHHHHHHhhcCcceeEEEeec
Q 048064 108 AAPLLGIW-GIGGIGKTTIARVIFNRISRNFKGSCFLENI 146 (429)
Q Consensus 108 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~ 146 (429)
..++|+|+ +-||+||||+|..++..+...- ..+.+.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~ 43 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLG-KRVLLVDL 43 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCC-CCEEEEEC
Confidence 45678886 6899999999999999886553 33444433
No 493
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.85 E-value=0.18 Score=47.23 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHHhh--cCcceeEEE
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNRIS--RNFKGSCFL 143 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~ 143 (429)
..++...|-||+||||+|..++..+. ..-..+..+
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLv 54 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI 54 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 56677789999999999999999887 543333333
No 494
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.84 E-value=0.087 Score=44.96 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.3
Q ss_pred CEEEEEcCCCcchHHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
..|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998863
No 495
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.83 E-value=1 Score=46.96 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHHhhc
Q 048064 99 VEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNRISR 135 (429)
Q Consensus 99 ~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 135 (429)
.+.+...+ ..++..|+|++|+|||+++..+...+..
T Consensus 362 ~~Av~~~l-~~~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 362 VYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp HHHHHHHH-TSSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-cCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 33333334 4578899999999999998888877654
No 496
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.82 E-value=0.086 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCcchHHHHHHHHHH
Q 048064 109 APLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 109 ~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
...|+|+|.+|+|||||...+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 456999999999999999998863
No 497
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.82 E-value=0.11 Score=47.43 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCEEEEEcCCCcchHHHHHHHHHH
Q 048064 99 VEEIQSLLGAAPLLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 99 ~~~l~~~l~~~~~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
++++...+ ...+++|.|++|+|||||.+.++..
T Consensus 160 v~~lf~~l-~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYL-KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHH-SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHh-cCCeEEEECCCCCcHHHHHHHhccc
Confidence 34444444 4578999999999999999988754
No 498
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.81 E-value=0.084 Score=44.79 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.7
Q ss_pred CEEEEEcCCCcchHHHHHHHHH
Q 048064 110 PLLGIWGIGGIGKTTIARVIFN 131 (429)
Q Consensus 110 ~~v~I~G~~GiGKTtLa~~~~~ 131 (429)
--|+|+|.+|+|||||...+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3589999999999999999875
No 499
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.78 E-value=0.29 Score=43.51 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=23.2
Q ss_pred CCCEEEE-EcCCCcchHHHHHHHHHHhhcC
Q 048064 108 AAPLLGI-WGIGGIGKTTIARVIFNRISRN 136 (429)
Q Consensus 108 ~~~~v~I-~G~~GiGKTtLa~~~~~~~~~~ 136 (429)
..++|+| .|-||+||||+|..++..+...
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~ 46 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQ 46 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHC
Confidence 4566766 5688999999999999987655
No 500
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.09 Score=44.20 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 048064 111 LLGIWGIGGIGKTTIARVIFNR 132 (429)
Q Consensus 111 ~v~I~G~~GiGKTtLa~~~~~~ 132 (429)
-|+|+|.+|+|||||...+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
Done!