BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048066
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1
            SV=1
          Length = 1282

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 2    WADVEIPCFYNPLTTALQP--RDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRK 59
            W  V IP FYNP+T+ L+P     TW GM+T  +LR  H   +  NKDSLYKPI R+ + 
Sbjct: 1101 WYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPILRQKKH 1160

Query: 60   FNPLVIPKSLH 70
            FN L IPK+L 
Sbjct: 1161 FNSLHIPKALQ 1171


>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain
            ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1
          Length = 1183

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%)

Query: 2    WADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFN 61
            W  V +  FYNP+T+ L      W+G++   ++R   N   P N DS Y  IER  R FN
Sbjct: 1006 WYPVRVKKFYNPVTSLLLKEKTEWKGLRLTGQIRAAMNLETPSNPDSAYHKIERVERHFN 1065

Query: 62   PLVIPKSLH 70
             L +PK++ 
Sbjct: 1066 GLKVPKAVQ 1074


>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain
            972 / ATCC 24843) GN=bms1 PE=1 SV=2
          Length = 1121

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%)

Query: 1    GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKF 60
             W  V++  F   +T  L+     W GM+   E+R E     P+  +S Y+ I R  R F
Sbjct: 943  AWYPVQVRKFCTMVTNLLETDKTEWNGMRLTGEVRHELGLKTPLRPNSQYQEIVRPSRHF 1002

Query: 61   NPLVIPKSLH 70
            NPL +P SL 
Sbjct: 1003 NPLKVPASLQ 1012


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,664,601
Number of Sequences: 539616
Number of extensions: 997686
Number of successful extensions: 2125
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2121
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)