Query 048066
Match_columns 72
No_of_seqs 105 out of 183
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5192 BMS1 GTP-binding prote 99.5 3.7E-15 8E-20 122.3 1.2 67 1-71 921-987 (1077)
2 TIGR01735 FGAM_synt phosphorib 54.4 14 0.0003 33.2 3.2 45 25-69 769-814 (1310)
3 COG0046 PurL Phosphoribosylfor 37.8 20 0.00043 30.7 1.6 25 28-52 527-551 (743)
4 PLN03206 phosphoribosylformylg 37.4 21 0.00045 32.3 1.6 28 25-52 761-788 (1307)
5 PHA03366 FGAM-synthase; Provis 27.1 35 0.00076 30.7 1.4 28 25-52 751-778 (1304)
6 PF13611 Peptidase_S76: Serine 26.4 36 0.00079 23.0 1.1 19 27-45 38-56 (121)
7 PF00550 PP-binding: Phosphopa 25.7 57 0.0012 17.7 1.7 22 24-45 31-52 (67)
8 cd07044 CofD_YvcK Family of Co 25.0 30 0.00066 26.3 0.5 21 27-47 33-53 (309)
9 PF05017 TMP: TMP repeat; Int 24.6 30 0.00065 14.0 0.3 8 25-32 1-8 (11)
10 PF12949 HeH: HeH/LEM domain; 22.9 48 0.001 17.7 0.9 16 30-45 5-23 (35)
11 cd07187 YvcK_like family of mo 21.3 41 0.00089 25.5 0.6 18 30-47 36-53 (308)
12 PF15608 PELOTA_1: PELOTA RNA 20.2 60 0.0013 21.2 1.1 21 21-41 15-35 (100)
13 PF14653 IGFL: Insulin growth 20.1 38 0.00082 21.9 0.2 10 8-17 21-30 (89)
No 1
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.7e-15 Score=122.32 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=64.7
Q ss_pred CeEecCCCccchhhhccCCCCCCCcccchhHHHHHHHhCCCCCCCCCCCCCcccCCCCCCCCCcCCccccC
Q 048066 1 GWADVEIPCFYNPLTTALQPRDKTWQGMKTVAELRREHNFSIPVNKDSLYKPIERRPRKFNPLVIPKSLHW 71 (72)
Q Consensus 1 tW~~V~~~kFYnPVtsll~~~~~~W~gMrt~geLR~e~~i~~p~~~DS~Yk~IeR~~r~FnpL~IPk~Lq~ 71 (72)
+||||++.+|||||+|||. +|+|+|.+||+|...|+..|-++||.|-.+||-.++|+.+.+|+.+|+
T Consensus 921 ~~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~~p~~~~~~~e~~~~~~~~~~~pr~ie~ 987 (1077)
T COG5192 921 CFVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIES 987 (1077)
T ss_pred eeeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCCCCCccchhhhhhccccccccCcHhHHh
Confidence 6999999999999999996 599999999999999999999999999999999999999999999885
No 2
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=54.43 E-value=14 Score=33.23 Aligned_cols=45 Identities=31% Similarity=0.439 Sum_probs=31.4
Q ss_pred cccchhHHHHHHHhCCCCCCCCCCCCCccc-CCCCCCCCCcCCccc
Q 048066 25 WQGMKTVAELRREHNFSIPVNKDSLYKPIE-RRPRKFNPLVIPKSL 69 (72)
Q Consensus 25 W~gMrt~geLR~e~~i~~p~~~DS~Yk~Ie-R~~r~FnpL~IPk~L 69 (72)
|+-++-..+.+.++|++++.-+||+|-.-. ...-.|..+.+|..|
T Consensus 769 ~~av~al~eac~~LGipiigGKdSls~~~~~~~~G~~~~v~~PpTl 814 (1310)
T TIGR01735 769 YDAVKAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAPGSL 814 (1310)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccccCCCcCccccCCCc
Confidence 777888899999999999999999994321 111234555555443
No 3
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=37.82 E-value=20 Score=30.71 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.0
Q ss_pred chhHHHHHHHhCCCCCCCCCCCCCc
Q 048066 28 MKTVAELRREHNFSIPVNKDSLYKP 52 (72)
Q Consensus 28 Mrt~geLR~e~~i~~p~~~DS~Yk~ 52 (72)
++-.+++++++|+|++.-+||+|-.
T Consensus 527 ~~g~~eac~~l~~pvv~GnvSlyne 551 (743)
T COG0046 527 VAGLAEACRALGIPVVGGNVSLYNE 551 (743)
T ss_pred HHHHHHHHHHhCCCcccceeeeeec
Confidence 4556899999999999999999963
No 4
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=37.43 E-value=21 Score=32.28 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=25.1
Q ss_pred cccchhHHHHHHHhCCCCCCCCCCCCCc
Q 048066 25 WQGMKTVAELRREHNFSIPVNKDSLYKP 52 (72)
Q Consensus 25 W~gMrt~geLR~e~~i~~p~~~DS~Yk~ 52 (72)
...++-.+++..++|++++.-+||+|-.
T Consensus 761 ~~av~g~~~~~~~Lgipii~GKdSls~~ 788 (1307)
T PLN03206 761 YDAAVALRDAMIELGVAIDGGKDSLSMA 788 (1307)
T ss_pred HHHHHHHHHHHHHcCCCcccCeecCCCC
Confidence 6677888999999999999999999954
No 5
>PHA03366 FGAM-synthase; Provisional
Probab=27.06 E-value=35 Score=30.75 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.3
Q ss_pred cccchhHHHHHHHhCCCCCCCCCCCCCc
Q 048066 25 WQGMKTVAELRREHNFSIPVNKDSLYKP 52 (72)
Q Consensus 25 W~gMrt~geLR~e~~i~~p~~~DS~Yk~ 52 (72)
...|+.+++.++++||+++...||.|-.
T Consensus 751 ~eav~ai~e~C~~LgIpIv~G~~S~yne 778 (1304)
T PHA03366 751 YRALAACKEFCRELGVNFTFTSASSSPR 778 (1304)
T ss_pred HHHHHHHHHHHHHcCCCEeeeecccccc
Confidence 3457788899999999999999999953
No 6
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=26.38 E-value=36 Score=23.03 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.3
Q ss_pred cchhHHHHHHHhCCCCCCC
Q 048066 27 GMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 27 gMrt~geLR~e~~i~~p~~ 45 (72)
.|+.+.|+..|.|+|+..-
T Consensus 38 L~~~~~~ic~ergiPIe~I 56 (121)
T PF13611_consen 38 LVREVTEICCERGIPIEII 56 (121)
T ss_pred HHHHHHHHHHHcCCCEEEe
Confidence 3889999999999988744
No 7
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=25.72 E-value=57 Score=17.75 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.3
Q ss_pred CcccchhHHHHHHHhCCCCCCC
Q 048066 24 TWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 24 ~W~gMrt~geLR~e~~i~~p~~ 45 (72)
+=..|+..++|++++|+.+|..
T Consensus 31 Sl~~~~l~~~l~~~~g~~i~~~ 52 (67)
T PF00550_consen 31 SLDAIELVSELEEEFGIKIPPS 52 (67)
T ss_dssp HHHHHHHHHHHHHHHTSSTTHH
T ss_pred hHHHHHHHHHHHHHHcCCCCHH
Confidence 3567899999999999988754
No 8
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=25.01 E-value=30 Score=26.29 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.2
Q ss_pred cchhHHHHHHHhCCCCCCCCC
Q 048066 27 GMKTVAELRREHNFSIPVNKD 47 (72)
Q Consensus 27 gMrt~geLR~e~~i~~p~~~D 47 (72)
-..+.|.||+++|++.|-+-|
T Consensus 33 dGgssg~LR~~~g~~~~GDir 53 (309)
T cd07044 33 DGGSSGELRNXQDIPPPGDLR 53 (309)
T ss_pred CCccchhHHhccCCCCCccHH
Confidence 344689999999999997765
No 9
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=24.60 E-value=30 Score=14.04 Aligned_cols=8 Identities=38% Similarity=1.103 Sum_probs=5.4
Q ss_pred cccchhHH
Q 048066 25 WQGMKTVA 32 (72)
Q Consensus 25 W~gMrt~g 32 (72)
|.|+|+..
T Consensus 1 Wn~Ik~~~ 8 (11)
T PF05017_consen 1 WNGIKSFF 8 (11)
T ss_pred CchHHHHh
Confidence 77777653
No 10
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=22.91 E-value=48 Score=17.73 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=8.5
Q ss_pred hHHHHHH---HhCCCCCCC
Q 048066 30 TVAELRR---EHNFSIPVN 45 (72)
Q Consensus 30 t~geLR~---e~~i~~p~~ 45 (72)
|+.|||. |+||..|.+
T Consensus 5 tV~~Lk~iL~~~~I~~ps~ 23 (35)
T PF12949_consen 5 TVAQLKRILDEHGIEFPSN 23 (35)
T ss_dssp -SHHHHHHHHHHT---SSS
T ss_pred cHHHHHHHHHHcCCCCCCC
Confidence 4677775 788987755
No 11
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=21.26 E-value=41 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.5
Q ss_pred hHHHHHHHhCCCCCCCCC
Q 048066 30 TVAELRREHNFSIPVNKD 47 (72)
Q Consensus 30 t~geLR~e~~i~~p~~~D 47 (72)
++|.||+++|++.|-+-+
T Consensus 36 SSG~Lr~~~g~~~~GDiR 53 (308)
T cd07187 36 SSGRLRRELGIPAPGDIR 53 (308)
T ss_pred cchhHHHHcCCCCCCcHH
Confidence 589999999999987654
No 12
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.18 E-value=60 Score=21.24 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.2
Q ss_pred CCCCcccchhHHHHHHHhCCC
Q 048066 21 RDKTWQGMKTVAELRREHNFS 41 (72)
Q Consensus 21 ~~~~W~gMrt~geLR~e~~i~ 41 (72)
....|+|+..+.+|..++||.
T Consensus 15 ~~~~~~g~~~v~~i~~~~gI~ 35 (100)
T PF15608_consen 15 RAPTWQGWAEVERIAERYGIS 35 (100)
T ss_pred cchhHHHHHHHHHHHHHhCCC
Confidence 344699999999999999994
No 13
>PF14653 IGFL: Insulin growth factor-like family
Probab=20.06 E-value=38 Score=21.87 Aligned_cols=10 Identities=50% Similarity=0.893 Sum_probs=6.9
Q ss_pred Cccchhhhcc
Q 048066 8 PCFYNPLTTA 17 (72)
Q Consensus 8 ~kFYnPVtsl 17 (72)
-+||||...-
T Consensus 21 ~~~YNPl~~c 30 (89)
T PF14653_consen 21 DKFYNPLEHC 30 (89)
T ss_pred CcccChhhhc
Confidence 3799996643
Done!