Query 048066
Match_columns 72
No_of_seqs 105 out of 183
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dny_A Non-ribosomal peptide s 29.3 38 0.0013 19.3 2.3 24 22-45 43-66 (91)
2 4i4d_A Peptide synthetase NRPS 27.3 32 0.0011 19.6 1.7 22 24-45 47-68 (93)
3 2ahq_A Sigma-54, RNA polymeras 23.6 36 0.0012 20.1 1.5 14 29-42 57-70 (76)
4 2o2z_A Hypothetical protein; s 20.1 48 0.0016 24.3 1.8 15 29-43 41-55 (323)
5 2ehs_A ACP, acyl carrier prote 20.0 58 0.002 17.1 1.8 22 24-45 35-56 (77)
6 2ava_A ACP I, acyl carrier pro 19.6 60 0.002 17.6 1.8 21 25-45 39-59 (82)
7 1x3o_A Acyl carrier protein; s 19.5 60 0.0021 17.2 1.8 19 26-44 41-59 (80)
8 2kr5_A PKS, aflatoxin biosynth 19.2 80 0.0027 17.2 2.3 20 25-44 45-64 (89)
9 1l0i_A Acyl carrier protein; a 18.6 64 0.0022 17.2 1.8 20 26-45 39-58 (78)
10 2afd_A Protein ASL1650; twiste 18.1 64 0.0022 17.3 1.7 23 24-46 47-69 (88)
No 1
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=29.26 E-value=38 Score=19.33 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=19.7
Q ss_pred CCCcccchhHHHHHHHhCCCCCCC
Q 048066 22 DKTWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 22 ~~~W~gMrt~geLR~e~~i~~p~~ 45 (72)
..+-..|+..++|++++|+.+|..
T Consensus 43 gdSL~a~~l~~~l~~~~g~~l~~~ 66 (91)
T 1dny_A 43 GHSLKAMAVAAQVHREYQVELPLK 66 (91)
T ss_dssp CSSHHHHHHHHHHHHHCCCCCCHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHH
Confidence 345678999999999999988754
No 2
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=27.31 E-value=32 Score=19.58 Aligned_cols=22 Identities=0% Similarity=0.111 Sum_probs=18.4
Q ss_pred CcccchhHHHHHHHhCCCCCCC
Q 048066 24 TWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 24 ~W~gMrt~geLR~e~~i~~p~~ 45 (72)
+=..|+...+|++++|+.++..
T Consensus 47 SL~a~~l~~~l~~~~g~~l~~~ 68 (93)
T 4i4d_A 47 SIHAIXITNRVEELVDAELSIR 68 (93)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHH
Confidence 3577999999999999988753
No 3
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=23.60 E-value=36 Score=20.11 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=10.7
Q ss_pred hhHHHHHHHhCCCC
Q 048066 29 KTVAELRREHNFSI 42 (72)
Q Consensus 29 rt~geLR~e~~i~~ 42 (72)
||++..|.+.||+.
T Consensus 57 RTVaKYRe~l~Ip~ 70 (76)
T 2ahq_A 57 RTVAKYREMLGIPS 70 (76)
T ss_dssp HHHHHHHHHTC---
T ss_pred HHHHHHHHHcCCCc
Confidence 89999999999964
No 4
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=20.11 E-value=48 Score=24.34 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.2
Q ss_pred hhHHHHHHHhCCCCC
Q 048066 29 KTVAELRREHNFSIP 43 (72)
Q Consensus 29 rt~geLR~e~~i~~p 43 (72)
-+.|.||+++|++.|
T Consensus 41 gssG~LR~~~~~~~p 55 (323)
T 2o2z_A 41 GSSGRLRKELDIPPP 55 (323)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred ccchhhHhhcCCCCC
Confidence 369999999999877
No 5
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=19.95 E-value=58 Score=17.09 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=17.9
Q ss_pred CcccchhHHHHHHHhCCCCCCC
Q 048066 24 TWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 24 ~W~gMrt~geLR~e~~i~~p~~ 45 (72)
+-..|....+|+.++|+.+|..
T Consensus 35 Sl~~~~l~~~le~~~gi~i~~~ 56 (77)
T 2ehs_A 35 SLDVVELIMAFEEEFGIEIPDE 56 (77)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHHhCCccCHH
Confidence 3567788999999999988753
No 6
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=19.64 E-value=60 Score=17.56 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=17.6
Q ss_pred cccchhHHHHHHHhCCCCCCC
Q 048066 25 WQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 25 W~gMrt~geLR~e~~i~~p~~ 45 (72)
=..|....+|..++|+.+|..
T Consensus 39 l~~vel~~~le~~fgi~i~~~ 59 (82)
T 2ava_A 39 LDTVEIVMNLEEEFGINVDED 59 (82)
T ss_dssp SCHHHHHHHHHHHTTCCCCGG
T ss_pred HHHHHHHHHHHHHHCCccCHH
Confidence 456788999999999998854
No 7
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=19.52 E-value=60 Score=17.21 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=16.1
Q ss_pred ccchhHHHHHHHhCCCCCC
Q 048066 26 QGMKTVAELRREHNFSIPV 44 (72)
Q Consensus 26 ~gMrt~geLR~e~~i~~p~ 44 (72)
..|....+|..++|+.+|.
T Consensus 41 ~~~~l~~~le~~fgi~i~~ 59 (80)
T 1x3o_A 41 DTVELIMGLEDEFGLEISD 59 (80)
T ss_dssp HHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHHHHCCCcCH
Confidence 5678889999999998874
No 8
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=19.16 E-value=80 Score=17.17 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=17.5
Q ss_pred cccchhHHHHHHHhCCCCCC
Q 048066 25 WQGMKTVAELRREHNFSIPV 44 (72)
Q Consensus 25 W~gMrt~geLR~e~~i~~p~ 44 (72)
-..|+....|++++|+.+|.
T Consensus 45 L~~~~l~~~l~~~~g~~l~~ 64 (89)
T 2kr5_A 45 LSSMVIGSRFREDLGLDLGP 64 (89)
T ss_dssp HHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHHHHHCCCCCc
Confidence 46778899999999999987
No 9
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=18.63 E-value=64 Score=17.19 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.5
Q ss_pred ccchhHHHHHHHhCCCCCCC
Q 048066 26 QGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 26 ~gMrt~geLR~e~~i~~p~~ 45 (72)
..|....+|..++|+.+|..
T Consensus 39 ~~~el~~~le~~fgi~i~~~ 58 (78)
T 1l0i_A 39 DTVELVMALEEEFDTEIPDE 58 (78)
T ss_dssp HHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHhCCCCCHH
Confidence 45688899999999998753
No 10
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=18.08 E-value=64 Score=17.31 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=19.1
Q ss_pred CcccchhHHHHHHHhCCCCCCCC
Q 048066 24 TWQGMKTVAELRREHNFSIPVNK 46 (72)
Q Consensus 24 ~W~gMrt~geLR~e~~i~~p~~~ 46 (72)
+-..|+...+|++++|+.+|...
T Consensus 47 Sl~~~~l~~~l~~~~~~~i~~~~ 69 (88)
T 2afd_A 47 SSKALILLGRLEKWLGKELNPVL 69 (88)
T ss_dssp STHHHHHHHHHHHHTTSCCCGGG
T ss_pred HHHHHHHHHHHHHHHCCCcCHHH
Confidence 45678899999999999988653
Done!