Query 048066
Match_columns 72
No_of_seqs 105 out of 183
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 10:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048066.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048066hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ok5a4 g.18.1.1 (A:9-76) Comp 40.5 3.9 0.00029 22.9 0.7 25 7-31 30-55 (68)
2 d2gdwa1 a.28.1.2 (A:8-83) Pept 37.5 11 0.00077 20.1 2.2 30 16-45 30-59 (76)
3 d1o17a2 c.27.1.1 (A:71-343) An 35.7 6.4 0.00046 26.2 1.3 20 26-45 85-104 (273)
4 d2jq4a1 a.28.1.1 (A:1-83) Hypo 23.8 18 0.0013 19.1 1.6 23 23-45 34-56 (83)
5 d1t3ta5 d.79.4.1 (A:617-816) F 18.3 3.6 0.00027 26.4 -2.6 27 25-51 138-165 (200)
6 d1nq4a_ a.28.1.1 (A:) Oxytetra 17.2 36 0.0026 18.5 2.0 21 25-45 42-62 (95)
7 d1jmsa3 a.60.12.1 (A:243-302) 17.0 25 0.0018 18.5 1.2 13 26-38 27-39 (60)
8 d1dv5a_ a.28.1.3 (A:) apo-D-al 16.9 23 0.0017 18.6 1.0 23 23-45 37-59 (80)
9 d2pnga1 a.28.1.1 (A:1-76) Type 16.8 33 0.0024 17.9 1.7 22 24-45 38-59 (76)
10 d1f80d_ a.28.1.1 (D:) Acyl car 15.5 38 0.0027 17.4 1.7 22 24-45 37-58 (74)
No 1
>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.49 E-value=3.9 Score=22.87 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred CCccch-hhhccCCCCCCCcccchhH
Q 048066 7 IPCFYN-PLTTALQPRDKTWQGMKTV 31 (72)
Q Consensus 7 ~~kFYn-PVtsll~~~~~~W~gMrt~ 31 (72)
|.-||= ||.+-+......|.-|||.
T Consensus 30 P~G~YPyPv~~R~C~~~G~Ws~lr~~ 55 (68)
T d2ok5a4 30 PSGFYPYPVQTRTCRSTGSWSTLKTQ 55 (68)
T ss_dssp CTTEEEESCSEEEBCTTSSBCCCBCT
T ss_pred CCCCCCCCccEEEecCCCcccccccC
Confidence 456777 8999998888899999874
No 2
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=37.47 E-value=11 Score=20.08 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=22.2
Q ss_pred ccCCCCCCCcccchhHHHHHHHhCCCCCCC
Q 048066 16 TALQPRDKTWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 16 sll~~~~~~W~gMrt~geLR~e~~i~~p~~ 45 (72)
|+..-...+=..|+..++|++++|+.++..
T Consensus 30 ~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~ 59 (76)
T d2gdwa1 30 NFFQIGGHSLKAMAVAAQVHREYQVELPLK 59 (76)
T ss_dssp TSSTTTCTTHHHHHHHHHHHHTTSSCCTTH
T ss_pred CHHHcCCChHHHHHHHHHHHHHHCCCCCHH
Confidence 333333445678999999999999988764
No 3
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=35.67 E-value=6.4 Score=26.20 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.1
Q ss_pred ccchhHHHHHHHhCCCCCCC
Q 048066 26 QGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 26 ~gMrt~geLR~e~~i~~p~~ 45 (72)
..|+.++.+|++.|++++.|
T Consensus 85 Pamk~v~~vRk~Lg~rTiFN 104 (273)
T d1o17a2 85 PAMKNVANVRKTLGIRTIFN 104 (273)
T ss_dssp GGGGGTHHHHHHHCSCCGGG
T ss_pred hHHHHHHHHHHHcCCCchhh
Confidence 57999999999999998876
No 4
>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=23.81 E-value=18 Score=19.11 Aligned_cols=23 Identities=9% Similarity=0.338 Sum_probs=19.0
Q ss_pred CCcccchhHHHHHHHhCCCCCCC
Q 048066 23 KTWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 23 ~~W~gMrt~geLR~e~~i~~p~~ 45 (72)
.+=..|+....|+.++|+.+|..
T Consensus 34 DSl~~~~l~~~le~~f~v~i~~~ 56 (83)
T d2jq4a1 34 SSFASVQLMLGIEEAFDIEFPDN 56 (83)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCHH
T ss_pred ccHHHHHHHHHHHHHHCCCCCHH
Confidence 34567899999999999999853
No 5
>d1t3ta5 d.79.4.1 (A:617-816) FGAM synthase PurL, PurM-like module, N1 and N2 domains {Salmonella typhimurium [TaxId: 90371]}
Probab=18.26 E-value=3.6 Score=26.41 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=21.8
Q ss_pred cccchhH-HHHHHHhCCCCCCCCCCCCC
Q 048066 25 WQGMKTV-AELRREHNFSIPVNKDSLYK 51 (72)
Q Consensus 25 W~gMrt~-geLR~e~~i~~p~~~DS~Yk 51 (72)
|+.+... .+...++|++++..+||+|-
T Consensus 138 ~~~~~~~~~d~c~~l~ip~i~GkdSls~ 165 (200)
T d1t3ta5 138 YDAVKAVGEELCPQLGLTIPVGKDSMSM 165 (200)
T ss_dssp HHHHHHHHTTHHHHHTCEEEEEEEECBC
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCCCcce
Confidence 5555554 58899999999999999974
No 6
>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]}
Probab=17.16 E-value=36 Score=18.50 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.0
Q ss_pred cccchhHHHHHHHhCCCCCCC
Q 048066 25 WQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 25 W~gMrt~geLR~e~~i~~p~~ 45 (72)
=..|..+.+|.+++|+.+|..
T Consensus 42 l~~~el~~~le~~~gv~l~~~ 62 (95)
T d1nq4a_ 42 LALLNTVGRIERDYGVQLGDD 62 (95)
T ss_dssp HHHHHHHHHHHHHTCCCSCTT
T ss_pred HHHHHHHHHHHHHhcCCCCHH
Confidence 467888999999999999865
No 7
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.98 E-value=25 Score=18.51 Aligned_cols=13 Identities=15% Similarity=0.613 Sum_probs=10.7
Q ss_pred ccchhHHHHHHHh
Q 048066 26 QGMKTVAELRREH 38 (72)
Q Consensus 26 ~gMrt~geLR~e~ 38 (72)
+|+||..+||.+.
T Consensus 27 ~Gi~ti~dL~~~~ 39 (60)
T d1jmsa3 27 MGFRTLSKIQSDK 39 (60)
T ss_dssp TTCCSHHHHHHCS
T ss_pred hCCCCHHHHHhcC
Confidence 6899999999643
No 8
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=16.86 E-value=23 Score=18.63 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.3
Q ss_pred CCcccchhHHHHHHHhCCCCCCC
Q 048066 23 KTWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 23 ~~W~gMrt~geLR~e~~i~~p~~ 45 (72)
.+=..|.....|+.++|+.+|..
T Consensus 37 DSl~~vel~~~ie~~fgi~i~~~ 59 (80)
T d1dv5a_ 37 DSMGTVQLLLELQSQFGVDAPVS 59 (80)
T ss_dssp CSHHHHHHHHHHTTTSCCCCCCS
T ss_pred CHHHHHHHHHHHHHHHCCCCCHH
Confidence 44567899999999999999865
No 9
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.82 E-value=33 Score=17.93 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.0
Q ss_pred CcccchhHHHHHHHhCCCCCCC
Q 048066 24 TWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 24 ~W~gMrt~geLR~e~~i~~p~~ 45 (72)
+=..|+....|++++|+.+|..
T Consensus 38 Sl~a~el~~~i~~~~g~~l~~~ 59 (76)
T d2pnga1 38 SLMGVEVRQILEREHDLVLPIR 59 (76)
T ss_dssp SHHHHHHHHHHHHHTCCCCCHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHH
Confidence 3578999999999999999875
No 10
>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]}
Probab=15.45 E-value=38 Score=17.40 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=18.2
Q ss_pred CcccchhHHHHHHHhCCCCCCC
Q 048066 24 TWQGMKTVAELRREHNFSIPVN 45 (72)
Q Consensus 24 ~W~gMrt~geLR~e~~i~~p~~ 45 (72)
+...|....+|..++|+.+|..
T Consensus 37 Sl~~vel~~~le~~f~i~i~~~ 58 (74)
T d1f80d_ 37 XLDVVELVMELEDEFDMEISDE 58 (74)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHH
T ss_pred HhHHHHHHHHHHHHhCCCCCHH
Confidence 3567888999999999998853
Done!