BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048067
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4ST04|RL23_AERS4 50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449)
GN=rplW PE=3 SV=1
Length = 100
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73
A +KL+ +E+E VRTLN +G KR + ++KKAY TLK
Sbjct: 46 AVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88
>sp|A0KF23|RL23_AERHH 50S ribosomal protein L23 OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplW PE=3
SV=1
Length = 100
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73
A +KL+ +E+E VRTLN +G KR + ++KKAY TLK
Sbjct: 46 AVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88
>sp|Q0I0A3|RL23_SHESR 50S ribosomal protein L23 OS=Shewanella sp. (strain MR-7) GN=rplW
PE=3 SV=2
Length = 100
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A +KL+ +E+E VRTL +G KR G + ++KKAY TL
Sbjct: 46 AVAKLFEVEVESVRTLVSKGKTKRTGGRVGRRSDWKKAYVTL 87
>sp|Q0HNT5|RL23_SHESM 50S ribosomal protein L23 OS=Shewanella sp. (strain MR-4) GN=rplW
PE=3 SV=2
Length = 100
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A +KL+ +E+E VRTL +G KR G + ++KKAY TL
Sbjct: 46 AVAKLFEVEVESVRTLVSKGKTKRTGGRVGRRSDWKKAYVTL 87
>sp|Q8EK66|RL23_SHEON 50S ribosomal protein L23 OS=Shewanella oneidensis (strain MR-1)
GN=rplW PE=3 SV=2
Length = 100
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A +KL+ +E+E VRTL +G KR G ++KKAY TL
Sbjct: 46 AVAKLFEVEVESVRTLVSKGKTKRTGGRTGRRSDWKKAYVTL 87
>sp|Q12SV7|RL23_SHEDO 50S ribosomal protein L23 OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=rplW PE=3 SV=1
Length = 100
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A +KL+ +E++ VRTL +G KR G + ++KKAY TL
Sbjct: 46 AVAKLFEVEVDSVRTLVNKGKTKRTGGRVGRRSDWKKAYVTL 87
>sp|Q8K952|RL23_BUCAP 50S ribosomal protein L23 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=rplW PE=3 SV=1
Length = 100
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 23 EIAFKTMHAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
EI F A L+ +++E V+T+ +G KKR+ ++ ++KKAY +KK
Sbjct: 42 EIKF----AVQNLFNIQVESVKTVYVKGKKKRQSNRIIYRSDWKKAYIKVKK 89
>sp|Q089Q2|RL23_SHEFN 50S ribosomal protein L23 OS=Shewanella frigidimarina (strain
NCIMB 400) GN=rplW PE=3 SV=1
Length = 100
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A +KL+ +E++ VRTL +G KR G + ++KKAY TL
Sbjct: 46 AVAKLFEVEVDSVRTLVNKGKTKRTGGRVGRRIDWKKAYVTL 87
>sp|Q89A70|RL23_BUCBP 50S ribosomal protein L23 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rplW PE=3 SV=1
Length = 100
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A ++ + ++ V TL QG KR++ + N+KKAY TLK+
Sbjct: 46 AVQNMFNVAVKNVNTLVVQGKCKRKKSRITCSSNWKKAYVTLKR 89
>sp|Q15YN7|RL23_PSEA6 50S ribosomal protein L23 OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=rplW PE=3 SV=1
Length = 100
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E+ VRT+N +G KR ++KKAY LK+
Sbjct: 46 AVEKLFEVEVNSVRTVNVKGKTKRHGASFGKRKDWKKAYVVLKE 89
>sp|Q68W80|RL23_RICTY 50S ribosomal protein L23 OS=Rickettsia typhi (strain ATCC VR-144
/ Wilmington) GN=rplW PE=3 SV=1
Length = 98
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A ++ ++++KV LN QG KKR +G + T N KKA TL+K
Sbjct: 44 AIEAIFKVKVKKVNILNIQGKKKRFKGIIGTQINQKKAIVTLEKD 88
>sp|Q3IF23|RL23_PSEHT 50S ribosomal protein L23 OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=rplW PE=3 SV=1
Length = 100
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E+ VRTLN +G KR ++KKAY TLK+
Sbjct: 46 AVEKLFEVEVTGVRTLNVKGKTKRTGARFGRRNDWKKAYVTLKE 89
>sp|C4L7T2|RL23_TOLAT 50S ribosomal protein L23 OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=rplW PE=3 SV=1
Length = 101
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A KL+ +++E VRTLN G KR + ++KKAY TL
Sbjct: 46 AVEKLFEVKVEAVRTLNVVGKTKRTGSRMGRRSDWKKAYVTL 87
>sp|A3Q984|RL23_SHELP 50S ribosomal protein L23 OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=rplW PE=3 SV=1
Length = 99
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A +KL+ +E++ VRTL +G KR ++KKAY TL
Sbjct: 46 AVAKLFEVEVDSVRTLVNKGKTKRHGARTGRRSDWKKAYVTL 87
>sp|C6E4Q5|RL23_GEOSM 50S ribosomal protein L23 OS=Geobacter sp. (strain M21) GN=rplW
PE=3 SV=1
Length = 94
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ ++ V T+N G KR + N+KKAY TLK+
Sbjct: 42 AVEKLFNAQVSAVNTVNVAGKTKRTAKGIGKRSNWKKAYVTLKE 85
>sp|B5EFQ2|RL23_GEOBB 50S ribosomal protein L23 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rplW PE=3 SV=1
Length = 94
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ ++ V T+N G KR + N+KKAY TLK+
Sbjct: 42 AVEKLFNAQVSAVNTVNVAGKTKRTAKGIGKRSNWKKAYVTLKE 85
>sp|C4K2H7|RL23_RICPU 50S ribosomal protein L23 OS=Rickettsia peacockii (strain Rustic)
GN=rplW PE=3 SV=1
Length = 98
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A +++ ++++KV LN +G KKR +G + T N KKA TL+K
Sbjct: 44 AIEEIFKVKVKKVNILNVKGKKKRFKGIIGTQINRKKAIVTLEKD 88
>sp|Q605B4|RL23_METCA 50S ribosomal protein L23 OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1
Length = 97
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 19 ENIKEIAFKTMHAASKL---------YGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAY 69
E ++ F+ AASKL +G++++ VR LN +G KR + ++KKAY
Sbjct: 24 EKNRQFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAY 83
Query: 70 RTLK 73
LK
Sbjct: 84 VKLK 87
>sp|Q4UMS7|RL23_RICFE 50S ribosomal protein L23 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=rplW PE=3 SV=1
Length = 98
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A +++ ++++KV LN +G KKR +G + T N KKA TL+K
Sbjct: 44 AIEEIFKVKVKKVNILNVKGKKKRFKGIIGTQINRKKAIVTLEKD 88
>sp|A8GT67|RL23_RICRS 50S ribosomal protein L23 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rplW PE=3 SV=1
Length = 98
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A +++ ++++KV LN +G KKR +G + T N KKA TL+K
Sbjct: 44 AIEEIFKVKVKKVNILNVKGKKKRFKGIIGTQINRKKAIVTLEKD 88
>sp|B0BUQ8|RL23_RICRO 50S ribosomal protein L23 OS=Rickettsia rickettsii (strain Iowa)
GN=rplW PE=3 SV=1
Length = 98
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A +++ ++++KV LN +G KKR +G + T N KKA TL+K
Sbjct: 44 AIEEIFKVKVKKVNILNVKGKKKRFKGIIGTQINRKKAIVTLEKD 88
>sp|A8GYX8|RL23_SHEPA 50S ribosomal protein L23 OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=rplW PE=3 SV=1
Length = 100
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A ++L+ +E++ VRTL +G KR + ++KKAY TL
Sbjct: 46 AVAQLFEVEVDSVRTLVNKGKTKRTGARVGRRSDWKKAYVTL 87
>sp|Q92GW8|RL23_RICCN 50S ribosomal protein L23 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=rplW PE=3 SV=1
Length = 98
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A +++ ++++KV LN +G KKR +G + T N KKA TL+K
Sbjct: 44 AIEEIFKVKVKKVNILNVKGKKKRFKGIIGTQINRKKAIVTLEKD 88
>sp|C3PPA5|RL23_RICAE 50S ribosomal protein L23 OS=Rickettsia africae (strain ESF-5)
GN=rplW PE=3 SV=1
Length = 98
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A +++ ++++KV LN +G KKR +G + T N KKA TL+K
Sbjct: 44 AIEEIFKVKVKKVNILNVKGKKKRFKGIIGTQINRKKAIVTLEKD 88
>sp|C5BQ63|RL23_TERTT 50S ribosomal protein L23 OS=Teredinibacter turnerae (strain ATCC
39867 / T7901) GN=rplW PE=3 SV=1
Length = 98
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A KL+ + +E VR LN +G KR + ++KKAY TL
Sbjct: 45 AVEKLFNVSVEGVRVLNVKGKTKRTRYGMGRRSDWKKAYVTL 86
>sp|C5BGM3|RL23_EDWI9 50S ribosomal protein L23 OS=Edwardsiella ictaluri (strain
93-146) GN=rplW PE=3 SV=1
Length = 100
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E++ VRTL +G KR + ++KKAY TLK+
Sbjct: 46 AVKKLFEVEVDTVRTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89
>sp|A8G1E6|RL23_SHESH 50S ribosomal protein L23 OS=Shewanella sediminis (strain
HAW-EB3) GN=rplW PE=3 SV=1
Length = 99
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A ++L+ +E++ VRTL +G KR + ++KKAY TL
Sbjct: 46 AVAQLFEVEVDSVRTLVNKGKTKRTGARMGRRVDWKKAYVTL 87
>sp|Q2NQM4|RL23_SODGM 50S ribosomal protein L23 OS=Sodalis glossinidius (strain
morsitans) GN=rplW PE=3 SV=1
Length = 100
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E+ VRTL +G KR + ++KKAY TLK+
Sbjct: 46 AVHKLFEVEVNDVRTLVVKGKTKRHGQRIGRRSDWKKAYVTLKE 89
>sp|B8CND5|RL23_SHEPW 50S ribosomal protein L23 OS=Shewanella piezotolerans (strain WP3
/ JCM 13877) GN=rplW PE=3 SV=1
Length = 100
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A ++L+ +E++ VRTL +G KR ++KKAY TL
Sbjct: 46 AVAQLFEVEVDSVRTLVNKGKTKRHGARTGRRSDWKKAYVTL 87
>sp|B1KMY1|RL23_SHEWM 50S ribosomal protein L23 OS=Shewanella woodyi (strain ATCC 51908
/ MS32) GN=rplW PE=3 SV=1
Length = 99
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A ++L+ +E++ VRTL +G KR + ++KKAY TL
Sbjct: 46 AVAQLFEVEVDSVRTLVNKGKTKRTGARMGRRVDWKKAYVTL 87
>sp|Q0I161|RL23_HAES1 50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt)
GN=rplW PE=3 SV=1
Length = 101
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 30 HAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
+A +L+ ++++ VRT+ +G KRR + ++KKAY TL++
Sbjct: 45 NAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDWKKAYVTLQE 89
>sp|A5WCJ2|RL23_PSYWF 50S ribosomal protein L23 OS=Psychrobacter sp. (strain PRwf-1)
GN=rplW PE=3 SV=1
Length = 116
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 37 GLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73
G+E+ KV TLN +G KR + +YKKAY TLK
Sbjct: 52 GVEVTKVNTLNVKGKTKRFGRTVGRRNDYKKAYVTLK 88
>sp|Q8D210|RL23_WIGBR 50S ribosomal protein L23 OS=Wigglesworthia glossinidia
brevipalpis GN=rplW PE=3 SV=1
Length = 101
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 8 FPMKLLMPSSFENIKEIAFKTMHAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKK 67
F K+L S IK + K + ++++KVRT+ +G K+ + + N+KK
Sbjct: 31 FTFKVLKNSKKSEIKS-------SIEKFFNVKVKKVRTVMLKGKSKKHKNIIGKRKNWKK 83
Query: 68 AYRTLKK 74
AY LKK
Sbjct: 84 AYVVLKK 90
>sp|B4UBA1|RL23_ANASK 50S ribosomal protein L23 OS=Anaeromyxobacter sp. (strain K)
GN=rplW PE=3 SV=1
Length = 97
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 30 HAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ + + VRT +G KR + PN+KKAY TLK+
Sbjct: 43 QAVEKLFNVHVLDVRTAIARGKNKRVGRNVGRRPNWKKAYVTLKE 87
>sp|B8J862|RL23_ANAD2 50S ribosomal protein L23 OS=Anaeromyxobacter dehalogenans
(strain 2CP-1 / ATCC BAA-258) GN=rplW PE=3 SV=1
Length = 97
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 30 HAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ + + VRT +G KR + PN+KKAY TLK+
Sbjct: 43 QAVEKLFNVHVLDVRTAIARGKNKRVGRNVGRRPNWKKAYVTLKE 87
>sp|Q2IJ87|RL23_ANADE 50S ribosomal protein L23 OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=rplW PE=3 SV=1
Length = 97
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 30 HAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ + + VRT +G KR + PN+KKAY TLK+
Sbjct: 43 QAVEKLFNVHVLDVRTAIARGKNKRVGRNVGRRPNWKKAYVTLKE 87
>sp|P55839|RL23_AGGAC 50S ribosomal protein L23 OS=Aggregatibacter
actinomycetemcomitans GN=rplW PE=3 SV=1
Length = 100
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 30 HAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
+A +L+ ++++ VRT+ +G KRR + ++KKAY TL++
Sbjct: 44 NAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQE 88
>sp|Q9ZCQ7|RL23_RICPR 50S ribosomal protein L23 OS=Rickettsia prowazekii (strain Madrid
E) GN=rplW PE=3 SV=1
Length = 98
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A ++ ++++KV LN +G KKR +G + T N KKA TL+K
Sbjct: 44 AIEAIFKVKVKKVNILNIKGKKKRFKGIIGTQINRKKAIVTLEKD 88
>sp|Q1WUD3|UPP_LACS1 Uracil phosphoribosyltransferase OS=Lactobacillus salivarius
(strain UCC118) GN=upp PE=3 SV=1
Length = 209
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 14 MPSSFENIKEIAFKTMHAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYR 70
MP EN + I M A G I V L K+G K + CLV P KA+R
Sbjct: 118 MPDDLENREMIIVDPMLATG---GSAIMAVDALKKRGAKSIKFVCLVAAPEGVKAFR 171
>sp|B0TM10|RL23_SHEHH 50S ribosomal protein L23 OS=Shewanella halifaxensis (strain
HAW-EB4) GN=rplW PE=3 SV=1
Length = 100
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72
A ++L+ +E++ VRTL +G KR ++KKAY TL
Sbjct: 46 AVAQLFEVEVDSVRTLVNKGKTKRTGARTGRRSDWKKAYVTL 87
>sp|A5UDU5|RL23_HAEIE 50S ribosomal protein L23 OS=Haemophilus influenzae (strain
PittEE) GN=rplW PE=3 SV=1
Length = 109
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75
A ++L+ ++++ VRT+ +G KRR + ++KKAY TL K
Sbjct: 45 AVAQLFEVKVDSVRTVVVKGKTKRRGNKMGRRSDWKKAYVTLAKA 89
>sp|Q39Y04|RL23_GEOMG 50S ribosomal protein L23 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=rplW PE=3 SV=1
Length = 94
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 30 HAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
+A KL+ +E+ +V T+N G KR N+KKAY TLK+
Sbjct: 41 NAVEKLFKVEVSEVNTVNVAGKLKRVGRHYGKRSNWKKAYVTLKE 85
>sp|Q1QDI4|RL23_PSYCK 50S ribosomal protein L23 OS=Psychrobacter cryohalolentis (strain
K5) GN=rplW PE=3 SV=1
Length = 116
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 37 GLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73
G+E+ KV TLN +G KR + +YKKAY TLK
Sbjct: 52 GVEVLKVNTLNVKGKTKRFGKSIGRRNDYKKAYVTLK 88
>sp|Q4FUF4|RL23_PSYA2 50S ribosomal protein L23 OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=rplW PE=3 SV=1
Length = 116
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 37 GLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73
G+E+ KV TLN +G KR + +YKKAY TLK
Sbjct: 52 GVEVLKVNTLNVKGKTKRFGKSIGRRNDYKKAYVTLK 88
>sp|A0JZ82|RL23_ARTS2 50S ribosomal protein L23 OS=Arthrobacter sp. (strain FB24)
GN=rplW PE=3 SV=1
Length = 101
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A K++ +++E + T+N+ G +KR + T N K+A TLK+
Sbjct: 47 AVEKIFSVKVESINTINRAGKRKRTKFGWGTRKNTKRAIVTLKE 90
>sp|B8HD04|RL23_ARTCA 50S ribosomal protein L23 OS=Arthrobacter chlorophenolicus
(strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
GN=rplW PE=3 SV=1
Length = 101
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A K++ +++E + T+N+ G +KR + T N K+A TLK+
Sbjct: 47 AVEKIFSVKVESINTINRAGKRKRTKFGWGTRKNTKRAIVTLKE 90
>sp|P0C2N0|RL23_YEREN 50S ribosomal protein L23 OS=Yersinia enterocolitica GN=rplW PE=1
SV=1
Length = 100
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E+E V TL +G KR + ++KKAY TLK+
Sbjct: 46 AVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
>sp|A1JS44|RL23_YERE8 50S ribosomal protein L23 OS=Yersinia enterocolitica serotype O:8
/ biotype 1B (strain 8081) GN=rplW PE=3 SV=1
Length = 100
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E+E V TL +G KR + ++KKAY TLK+
Sbjct: 46 AVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
>sp|P69964|RL23_YERPS 50S ribosomal protein L23 OS=Yersinia pseudotuberculosis serotype
I (strain IP32953) GN=rplW PE=3 SV=1
Length = 100
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E+E V TL +G KR + ++KKAY TLK+
Sbjct: 46 AVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
>sp|Q1CCU6|RL23_YERPN 50S ribosomal protein L23 OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=rplW PE=3 SV=1
Length = 100
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
A KL+ +E+E V TL +G KR + ++KKAY TLK+
Sbjct: 46 AVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,090,768
Number of Sequences: 539616
Number of extensions: 786514
Number of successful extensions: 2809
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2679
Number of HSP's gapped (non-prelim): 152
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)