Query 048067
Match_columns 75
No_of_seqs 149 out of 1054
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00030 rpl23 ribosomal prote 99.9 2.4E-24 5.3E-29 138.0 5.6 69 7-75 2-82 (93)
2 PF00276 Ribosomal_L23: Riboso 99.9 2.8E-23 6E-28 131.6 5.4 69 7-75 2-83 (91)
3 PRK05738 rplW 50S ribosomal pr 99.9 3.4E-23 7.3E-28 131.9 5.7 69 7-75 2-83 (92)
4 COG0089 RplW Ribosomal protein 99.9 1.6E-22 3.6E-27 130.1 5.5 71 5-75 1-85 (94)
5 PRK12280 rplW 50S ribosomal pr 99.9 2.1E-22 4.6E-27 139.4 4.7 71 5-75 3-85 (158)
6 PRK14548 50S ribosomal protein 99.7 2.3E-17 5.1E-22 104.1 4.7 56 7-75 3-71 (84)
7 TIGR03636 L23_arch archaeal ri 99.6 2.9E-16 6.4E-21 97.7 4.9 45 18-75 11-64 (77)
8 PTZ00191 60S ribosomal protein 99.6 3.8E-15 8.2E-20 102.1 4.5 56 7-75 64-132 (145)
9 KOG4089 Predicted mitochondria 98.9 1.3E-09 2.7E-14 76.2 3.4 72 3-74 19-106 (165)
10 KOG1751 60s ribosomal protein 98.5 8E-08 1.7E-12 66.8 3.5 43 18-74 91-143 (157)
11 KOG4089 Predicted mitochondria 50.5 2.3 4.9E-05 30.1 -1.8 41 35-75 48-88 (165)
12 cd05860 Ig4_SCFR Fourth immuno 42.8 46 0.001 21.4 3.5 24 18-41 74-100 (101)
No 1
>CHL00030 rpl23 ribosomal protein L23
Probab=99.90 E-value=2.4e-24 Score=137.97 Aligned_cols=69 Identities=16% Similarity=0.182 Sum_probs=62.4
Q ss_pred CcceeeecC---ccccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEecC
Q 048067 7 DFPMKLLMP---SSFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74 (75)
Q Consensus 7 n~~~klv~~---~~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL~~ 74 (75)
|++.+|+++ ..+.+.|+|+|+|+++||| +|||+|.+|||++++||.||.|+..|++++||||||||++
T Consensus 2 ~iI~~PivTEKs~~l~e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~ 81 (93)
T CHL00030 2 DGIKYPVFTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQP 81 (93)
T ss_pred ceeccceeCHHHHHhhHCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCC
Confidence 577888887 2344579999999999999 9999999999999999999999999999999999999987
Q ss_pred C
Q 048067 75 P 75 (75)
Q Consensus 75 p 75 (75)
+
T Consensus 82 g 82 (93)
T CHL00030 82 G 82 (93)
T ss_pred c
Confidence 4
No 2
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=99.88 E-value=2.8e-23 Score=131.58 Aligned_cols=69 Identities=35% Similarity=0.492 Sum_probs=60.6
Q ss_pred CcceeeecCc----cccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEec
Q 048067 7 DFPMKLLMPS----SFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73 (75)
Q Consensus 7 n~~~klv~~~----~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL~ 73 (75)
|++..|+++. ..++.|+|+|+|+++||| +|||+|.+|||++++||.+|.|...|++++||||||+|+
T Consensus 2 ~ii~~p~iTeKs~~~~~~~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~ 81 (91)
T PF00276_consen 2 DIIKKPVITEKSMKLLENPNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLK 81 (91)
T ss_dssp TTEEEE--SHHHHHHHHHSSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEES
T ss_pred CEeecceecHhHHHhhhcCCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeC
Confidence 7888999982 345569999999999999 999999999999999999999999999999999999999
Q ss_pred CC
Q 048067 74 KP 75 (75)
Q Consensus 74 ~p 75 (75)
++
T Consensus 82 ~~ 83 (91)
T PF00276_consen 82 EG 83 (91)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 3
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=99.88 E-value=3.4e-23 Score=131.88 Aligned_cols=69 Identities=29% Similarity=0.411 Sum_probs=62.2
Q ss_pred CcceeeecCc----cccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEec
Q 048067 7 DFPMKLLMPS----SFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73 (75)
Q Consensus 7 n~~~klv~~~----~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL~ 73 (75)
|++..|+.+. .+|+.|+|+|.|+++||| +|||+|.+|||++++||.||.|+..|++++||||||+|+
T Consensus 2 ~ii~~P~~TEKs~~~~e~~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~ 81 (92)
T PRK05738 2 DVIKRPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLA 81 (92)
T ss_pred ccccccccCHHHHHhHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcC
Confidence 5677888872 245579999999999999 999999999999999999999999999999999999998
Q ss_pred CC
Q 048067 74 KP 75 (75)
Q Consensus 74 ~p 75 (75)
++
T Consensus 82 ~g 83 (92)
T PRK05738 82 EG 83 (92)
T ss_pred CC
Confidence 74
No 4
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-22 Score=130.07 Aligned_cols=71 Identities=35% Similarity=0.455 Sum_probs=63.8
Q ss_pred CCCcceeeecCc----cccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecc-eeeeCCCeeEEEE
Q 048067 5 LIDFPMKLLMPS----SFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREG-CLVTGPNYKKAYR 70 (75)
Q Consensus 5 ~~n~~~klv~~~----~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~-~~g~~~~~KKA~V 70 (75)
+.|+++.|+.+. .+|++|+|+|+|+++||| +|||+|.+|||+|++|+.||.+. +.|.+++||||||
T Consensus 1 ~~dvI~~PvvTEKa~~l~~~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V 80 (94)
T COG0089 1 LYDVIKSPVVTEKAMLLMEKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYV 80 (94)
T ss_pred CcchhhcceecHHHHHhHhhCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEE
Confidence 368899999982 235679999999999999 99999999999999999999988 8999999999999
Q ss_pred EecCC
Q 048067 71 TLKKP 75 (75)
Q Consensus 71 tL~~p 75 (75)
+|++.
T Consensus 81 ~l~~G 85 (94)
T COG0089 81 TLKEG 85 (94)
T ss_pred EccCC
Confidence 99863
No 5
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=99.86 E-value=2.1e-22 Score=139.37 Aligned_cols=71 Identities=25% Similarity=0.272 Sum_probs=64.0
Q ss_pred CCCcceeeecC---ccccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEe
Q 048067 5 LIDFPMKLLMP---SSFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTL 72 (75)
Q Consensus 5 ~~n~~~klv~~---~~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL 72 (75)
+.|++..|+++ ..+.+.|+|+|.|+++||| +|||+|.+|||+|++||.+|.|++.|++++||||||+|
T Consensus 3 ~~~iIk~PviTEKs~~l~e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g~~~G~~~~~KKAiVtL 82 (158)
T PRK12280 3 INEVIKKPILTEKSYSLMSKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLGRFPGFTNSYKKAYVTL 82 (158)
T ss_pred hHhhhhccccCHHHHhhhhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccCCcccccCCcEEEEEEC
Confidence 34688889998 3455569999999999999 99999999999999999999999999999999999999
Q ss_pred cCC
Q 048067 73 KKP 75 (75)
Q Consensus 73 ~~p 75 (75)
.+.
T Consensus 83 ~~g 85 (158)
T PRK12280 83 AEG 85 (158)
T ss_pred CCC
Confidence 863
No 6
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=99.69 E-value=2.3e-17 Score=104.08 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=48.3
Q ss_pred CcceeeecCc----cccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEec
Q 048067 7 DFPMKLLMPS----SFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73 (75)
Q Consensus 7 n~~~klv~~~----~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL~ 73 (75)
|++..|+.+. .+|+.|+|+|.|+++||| +|||+|.+|||++++ ++||||||+|+
T Consensus 3 ~iI~~PviTEK~~~~~e~~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-------------~~~KKA~V~L~ 69 (84)
T PRK14548 3 SIIKYPLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-------------KGEKKAYVKLA 69 (84)
T ss_pred cchhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-------------CCcEEEEEEeC
Confidence 5677788872 345569999999999999 999999999999996 58999999998
Q ss_pred CC
Q 048067 74 KP 75 (75)
Q Consensus 74 ~p 75 (75)
++
T Consensus 70 ~g 71 (84)
T PRK14548 70 EE 71 (84)
T ss_pred CC
Confidence 74
No 7
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=99.64 E-value=2.9e-16 Score=97.66 Aligned_cols=45 Identities=33% Similarity=0.464 Sum_probs=40.6
Q ss_pred ccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEecCC
Q 048067 18 FENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75 (75)
Q Consensus 18 ~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL~~p 75 (75)
+|+.|+|+|.|+++||| +|||+|.+|||++++ ++||||||||+++
T Consensus 11 ~e~~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-------------~~~KKA~VtL~~g 64 (77)
T TIGR03636 11 IEKENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-------------RGEKKAYVKLAEE 64 (77)
T ss_pred HHhCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-------------CCceEEEEEECCC
Confidence 45469999999999999 999999999999996 4899999999864
No 8
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=99.56 E-value=3.8e-15 Score=102.14 Aligned_cols=56 Identities=29% Similarity=0.343 Sum_probs=48.0
Q ss_pred CcceeeecCc----cccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEec
Q 048067 7 DFPMKLLMPS----SFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLK 73 (75)
Q Consensus 7 n~~~klv~~~----~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL~ 73 (75)
+++..|+.+. ..|+.|+|+|.||.+||| +|||+|.+|||++.++ +||||||+|.
T Consensus 64 ~IIk~Pl~TEKa~~~~E~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-------------g~KKA~V~L~ 130 (145)
T PTZ00191 64 SIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-------------GLKKAYIRLS 130 (145)
T ss_pred hhhhcccccHHHHHHHhhCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-------------CceEEEEEEC
Confidence 4667777772 246679999999999999 9999999999999976 7999999997
Q ss_pred CC
Q 048067 74 KP 75 (75)
Q Consensus 74 ~p 75 (75)
+.
T Consensus 131 ~~ 132 (145)
T PTZ00191 131 PD 132 (145)
T ss_pred CC
Confidence 63
No 9
>KOG4089 consensus Predicted mitochondrial ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.3e-09 Score=76.25 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCCCCcceeeecCccccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCC----ceeee---cceeeeCCCee
Q 048067 3 NMLIDFPMKLLMPSSFENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQG----MKKRR---EGCLVTGPNYK 66 (75)
Q Consensus 3 ~~~~n~~~klv~~~~~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~g----K~Kr~---~~~~g~~~~~K 66 (75)
.||||+|+.|++|......++.+|+|++.+|| +||++|.+|+|..+.| +.+.+ ...+.+-.+++
T Consensus 19 Vf~Pn~~~~l~rp~~~q~p~~~~FrVp~~m~k~DvR~YL~~iY~l~v~~vrtrl~~Gk~~~~~k~r~~~~k~i~kdmd~p 98 (165)
T KOG4089|consen 19 VFFPNFWINLVRPLVTQPPKIVKFRVPMSMNKFDVRDYLTHIYDLPVVDVRTRLQHGKDYKKTKKRLQSPKRIKKDMDEP 98 (165)
T ss_pred EecchhHHhhhcccccCCCceEEEEcchhhccccHHHHHHHhcCCceeeeeeeeeechhhhcceecccccceeecccccc
Confidence 48999999999997777789999999999999 9999999999999999 55544 23344455899
Q ss_pred EEEEEecC
Q 048067 67 KAYRTLKK 74 (75)
Q Consensus 67 KA~VtL~~ 74 (75)
=|||++..
T Consensus 99 ~~Yv~~pr 106 (165)
T KOG4089|consen 99 VAYVEEPR 106 (165)
T ss_pred eeeecCCC
Confidence 99998764
No 10
>KOG1751 consensus 60s ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=8e-08 Score=66.84 Aligned_cols=43 Identities=37% Similarity=0.530 Sum_probs=38.4
Q ss_pred ccCCCeEEEEEcCCCCc---------eeccEEceEEEEeeCCceeeecceeeeCCCe-eEEEEEecC
Q 048067 18 FENIKEIAFKTMHAASK---------LYGLEIEKVRTLNKQGMKKRREGCLVTGPNY-KKAYRTLKK 74 (75)
Q Consensus 18 ~~~~n~y~F~V~~~anK---------~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~-KKA~VtL~~ 74 (75)
.|+.|.++|.||..||| ||+++|.+|||++. +|+ |||||.|.+
T Consensus 91 ~ednNtlvf~vd~kankhqiKqAVkkLyd~dvakvntli~--------------p~g~kkayv~la~ 143 (157)
T KOG1751|consen 91 IEDNNTLVFIVDSKANKHQIKQAVKKLYDTDVAKVNTLIR--------------PDGEKKAYVRLAP 143 (157)
T ss_pred hhhCceeEEEEecccchHHHHHHHHHHhccchhhheeeec--------------CCCceeEEEecCC
Confidence 57789999999999998 99999999999984 455 899999974
No 11
>KOG4089 consensus Predicted mitochondrial ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=50.52 E-value=2.3 Score=30.08 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=34.8
Q ss_pred eeccEEceEEEEeeCCceeeecceeeeCCCeeEEEEEecCC
Q 048067 35 LYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKKP 75 (75)
Q Consensus 35 ~f~VkV~~VnT~~~~gK~Kr~~~~~g~~~~~KKA~VtL~~p 75 (75)
+++.+|.+++|.++.++....+...-...+++++++++..|
T Consensus 48 m~k~DvR~YL~~iY~l~v~~vrtrl~~Gk~~~~~k~r~~~~ 88 (165)
T KOG4089|consen 48 MNKFDVRDYLTHIYDLPVVDVRTRLQHGKDYKKTKKRLQSP 88 (165)
T ss_pred hccccHHHHHHHhcCCceeeeeeeeeechhhhcceeccccc
Confidence 88999999999999999998877777777788888877653
No 12
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=42.82 E-value=46 Score=21.35 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=16.5
Q ss_pred ccCCCeEEEEEcC-CCCc--eeccEEc
Q 048067 18 FENIKEIAFKTMH-AASK--LYGLEIE 41 (75)
Q Consensus 18 ~~~~n~y~F~V~~-~anK--~f~VkV~ 41 (75)
.++.|+|+|.+.. +++. -|.+.|.
T Consensus 74 ~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 74 GTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred hhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 3456999999954 4555 6777653
Done!