RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 048067
         (75 letters)



>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
          thermophilus [TaxId: 274]}
          Length = 93

 Score = 40.1 bits (94), Expect = 1e-06
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 34 KLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
            + +++ KV TL+ +G KKR    L   P+ KKA   +  
Sbjct: 43 TAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVAP 83


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
          [TaxId: 562]}
          Length = 93

 Score = 39.7 bits (93), Expect = 1e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 30 HAASKLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
           A  KL+ +E+E V TL  +G  KR    +    ++KKAY TLK+
Sbjct: 45 AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 93

 Score = 37.8 bits (88), Expect = 8e-06
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 34 KLYGLEIEKVRTLNKQGMKKRREGCLVTGPNYKKAYRTLKK 74
          + +G+ +  + T+N  G +KR    +    + KKA   L +
Sbjct: 43 QAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLAE 83


>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,
          C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 217

 Score = 28.5 bits (63), Expect = 0.055
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 10 MKLLMPSS--FENIKEIAFKTMHAASKLYGLEIEKVRTLNKQGMKKRREGCL 59
          ++ L   S  F+ I +    T     K Y + +  V  + K+G K+     L
Sbjct: 5  LRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFREDL 56


>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score = 25.4 bits (56), Expect = 0.35
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 31 AASKLYGLEIEKVRTLNKQGMKKRREGCLVTG 62
          A  + Y + +E+V T N    +K+    L   
Sbjct: 40 AVEEQYDVTVEQVNTQNTMDGEKKAVVRLSED 71


>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase,
          C-terminal domain {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 215

 Score = 24.7 bits (53), Expect = 1.4
 Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 10 MKLLMPSS--FENIKEIAFKTMHAASKLYGLEIEKVRTLNKQGMKKR 54
          +K++   S   + IK+    T  A    Y L++ ++  + ++G  +R
Sbjct: 5  IKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQR 51


>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus
          [TaxId: 271]}
          Length = 61

 Score = 22.7 bits (49), Expect = 2.6
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 27 KTMHAASKLYGLEIEKVRTLNKQGMKKRRE 56
           T+      +G+  E++R +  + ++K + 
Sbjct: 29 HTLEEVGAYFGVTRERIRQIENKALRKLKY 58


>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia
          coli [TaxId: 562]}
          Length = 68

 Score = 22.4 bits (48), Expect = 5.0
 Identities = 6/30 (20%), Positives = 15/30 (50%)

Query: 27 KTMHAASKLYGLEIEKVRTLNKQGMKKRRE 56
           T+    K + +  E++R +  + ++K R 
Sbjct: 26 YTLEEVGKQFDVTRERIRQIEAKALRKLRH 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 269,058
Number of extensions: 10066
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 9
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)