Query 048070
Match_columns 87
No_of_seqs 102 out of 1082
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:59:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02411 12-oxophytodienoate r 99.7 2.5E-17 5.4E-22 125.9 7.6 68 1-68 27-94 (391)
2 cd02803 OYE_like_FMN_family Ol 99.7 6.3E-17 1.4E-21 119.2 7.3 68 1-68 15-84 (327)
3 COG1902 NemA NADH:flavin oxido 99.7 7.3E-17 1.6E-21 122.8 6.9 68 1-68 21-90 (363)
4 cd04734 OYE_like_3_FMN Old yel 99.7 2.3E-16 5E-21 118.6 6.9 68 1-68 16-84 (343)
5 cd02932 OYE_YqiM_FMN Old yello 99.7 2.8E-16 6E-21 117.3 7.1 68 1-68 16-84 (336)
6 cd04733 OYE_like_2_FMN Old yel 99.7 2.5E-16 5.5E-21 117.7 6.9 68 1-68 17-89 (338)
7 cd04735 OYE_like_4_FMN Old yel 99.7 2.5E-16 5.4E-21 118.6 6.7 68 1-68 17-85 (353)
8 PF00724 Oxidored_FMN: NADH:fl 99.6 4.6E-16 9.9E-21 116.6 5.7 68 1-68 17-87 (341)
9 cd02933 OYE_like_FMN Old yello 99.6 1.8E-15 3.9E-20 113.7 7.4 67 1-68 17-84 (338)
10 cd02930 DCR_FMN 2,4-dienoyl-Co 99.6 2E-15 4.4E-20 113.5 7.3 68 1-68 16-84 (353)
11 PRK13523 NADPH dehydrogenase N 99.6 3.4E-15 7.3E-20 112.4 7.2 68 1-68 18-88 (337)
12 cd04747 OYE_like_5_FMN Old yel 99.6 7.3E-15 1.6E-19 111.6 7.1 68 1-68 16-85 (361)
13 PRK08255 salicylyl-CoA 5-hydro 99.6 6E-15 1.3E-19 120.0 7.0 68 1-68 414-482 (765)
14 PRK10605 N-ethylmaleimide redu 99.6 1.1E-14 2.5E-19 110.3 7.4 67 1-68 18-86 (362)
15 cd02931 ER_like_FMN Enoate red 99.4 4E-13 8.8E-18 102.4 7.1 68 1-68 16-90 (382)
16 cd02929 TMADH_HD_FMN Trimethyl 99.4 5E-13 1.1E-17 101.5 6.8 66 1-68 23-90 (370)
17 KOG0134 NADH:flavin oxidoreduc 96.0 0.0013 2.9E-08 51.2 -0.5 64 1-64 24-91 (400)
18 KOG0134 NADH:flavin oxidoreduc 94.2 0.01 2.2E-07 46.4 -0.6 68 3-70 43-112 (400)
19 TIGR02313 HpaI-NOT-DapA 2,4-di 78.9 6.2 0.00013 29.1 5.2 60 2-70 4-66 (294)
20 TIGR00674 dapA dihydrodipicoli 76.9 7.2 0.00016 28.4 5.1 68 2-78 2-73 (285)
21 TIGR02256 ICE_VC0181 integrati 74.4 23 0.0005 23.7 6.7 54 18-79 60-114 (131)
22 PRK03170 dihydrodipicolinate s 71.4 13 0.00028 27.1 5.2 59 2-69 5-66 (292)
23 PLN02417 dihydrodipicolinate s 71.3 12 0.00026 27.4 5.1 62 2-72 5-69 (280)
24 cd00954 NAL N-Acetylneuraminic 70.9 19 0.00041 26.3 6.0 59 2-69 4-66 (288)
25 cd00950 DHDPS Dihydrodipicolin 69.2 16 0.00035 26.4 5.3 59 2-69 4-65 (284)
26 cd00951 KDGDH 5-dehydro-4-deox 68.3 15 0.00032 27.0 5.0 59 2-69 4-65 (289)
27 PRK04147 N-acetylneuraminate l 67.7 18 0.0004 26.4 5.4 59 2-69 7-69 (293)
28 COG0329 DapA Dihydrodipicolina 66.1 18 0.00038 27.0 5.1 62 2-72 8-72 (299)
29 cd00408 DHDPS-like Dihydrodipi 65.2 18 0.00038 26.0 4.9 58 3-69 2-62 (281)
30 cd04722 TIM_phosphate_binding 61.2 41 0.0009 21.6 6.4 28 18-45 12-40 (200)
31 TIGR03249 KdgD 5-dehydro-4-deo 61.0 27 0.00058 25.6 5.2 59 2-69 9-70 (296)
32 PRK03620 5-dehydro-4-deoxygluc 60.3 28 0.00061 25.7 5.3 59 2-69 11-72 (303)
33 TIGR00683 nanA N-acetylneurami 58.9 29 0.00062 25.5 5.1 68 2-78 4-78 (290)
34 PTZ00378 hypothetical protein; 54.4 14 0.0003 30.2 2.9 56 16-86 327-386 (518)
35 TIGR01037 pyrD_sub1_fam dihydr 44.4 69 0.0015 23.3 5.1 25 17-43 24-48 (300)
36 cd00952 CHBPH_aldolase Trans-o 44.0 61 0.0013 24.1 4.8 57 13-78 23-83 (309)
37 cd00953 KDG_aldolase KDG (2-ke 41.2 1.1E+02 0.0024 22.2 5.8 67 2-78 4-73 (279)
38 PRK12863 YciI-like protein; Re 38.9 43 0.00093 20.4 2.9 53 17-72 21-74 (94)
39 PF15054 DUF4535: Domain of un 38.4 23 0.0005 19.7 1.4 17 70-86 5-21 (46)
40 PF00701 DHDPS: Dihydrodipicol 38.0 1.1E+02 0.0024 22.1 5.3 58 2-68 5-65 (289)
41 cd00034 ChSh Chromo Shadow Dom 32.8 35 0.00076 19.1 1.6 15 15-29 38-52 (54)
42 PF03808 Glyco_tran_WecB: Glyc 32.0 50 0.0011 22.3 2.6 58 14-71 110-167 (172)
43 TIGR02533 type_II_gspE general 30.4 60 0.0013 25.9 3.1 25 55-79 226-250 (486)
44 cd01129 PulE-GspE PulE/GspE Th 29.8 68 0.0015 23.3 3.1 24 55-78 64-87 (264)
45 PRK01160 hypothetical protein; 29.4 37 0.00079 23.9 1.6 15 61-75 9-23 (178)
46 smart00300 ChSh Chromo Shadow 29.3 43 0.00093 19.2 1.6 14 16-29 45-58 (61)
47 PF01393 Chromo_shadow: Chromo 28.4 44 0.00096 19.1 1.5 12 17-28 43-54 (58)
48 PF07750 GcrA: GcrA cell cycle 27.6 47 0.001 22.8 1.8 18 54-71 2-19 (162)
49 PRK10436 hypothetical protein; 27.5 67 0.0015 25.6 2.9 24 55-78 202-225 (462)
50 PRK05964 adenosylmethionine--8 27.2 1.9E+02 0.0042 22.0 5.3 40 31-77 200-239 (423)
51 PRK11088 rrmA 23S rRNA methylt 26.7 1.5E+02 0.0032 21.2 4.4 61 16-77 120-180 (272)
52 cd06533 Glyco_transf_WecG_TagA 26.4 69 0.0015 21.6 2.5 40 31-71 125-165 (171)
53 COG1182 AcpD Acyl carrier prot 23.9 2.8E+02 0.0061 20.0 5.4 61 2-68 93-165 (202)
54 cd01107 HTH_BmrR Helix-Turn-He 23.7 1.6E+02 0.0036 18.2 3.7 42 15-67 11-52 (108)
55 PRK13749 transcriptional regul 23.0 1.2E+02 0.0026 19.8 3.1 45 12-68 11-55 (121)
56 TIGR02538 type_IV_pilB type IV 22.0 96 0.0021 25.1 2.9 24 55-78 300-323 (564)
57 PF06437 ISN1: IMP-specific 5' 21.2 56 0.0012 26.0 1.4 19 56-74 16-34 (408)
No 1
>PLN02411 12-oxophytodienoate reductase
Probab=99.71 E-value=2.5e-17 Score=125.90 Aligned_cols=68 Identities=38% Similarity=0.562 Sum_probs=64.3
Q ss_pred CEEccCCCCcCCCCCCCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSYNNIPRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~dG~~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
||||||+++++.||.+|+++++||++||+|+||||+|++.|++.+..+++++++|+|+++++||+|..
T Consensus 27 iv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~ 94 (391)
T PLN02411 27 VVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVD 94 (391)
T ss_pred CEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHH
Confidence 79999999887789999999999999999669999999999999999999999999999999999975
No 2
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.69 E-value=6.3e-17 Score=119.25 Aligned_cols=68 Identities=25% Similarity=0.324 Sum_probs=64.2
Q ss_pred CEEccCCCCcC-CCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRS-YNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~-~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||++.++ +||.+|+++++||++||+| +||||+|++.|++.+..+++++++|+|+++++||++..
T Consensus 15 ~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (327)
T cd02803 15 IVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTE 84 (327)
T ss_pred cEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHH
Confidence 68999999888 5999999999999999995 89999999999999999999999999999999999865
No 3
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.68 E-value=7.3e-17 Score=122.80 Aligned_cols=68 Identities=29% Similarity=0.438 Sum_probs=64.3
Q ss_pred CEEccCCCCcCC-CCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSY-NNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~-dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
||||||++++++ ||.+||.+++||++||+| +||||+|.+.|++.++.+++++++|+|+|+++||+|-.
T Consensus 21 ivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~ 90 (363)
T COG1902 21 IVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTE 90 (363)
T ss_pred eeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHH
Confidence 699999999884 899999999999999996 89999999999999999999999999999999999864
No 4
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.65 E-value=2.3e-16 Score=118.59 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=63.9
Q ss_pred CEEccCCCCcCCCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSYNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+||||++++++||.+|+++++||++||+| +||||+|.+.|++.+..+++++++|+|+++++||+|..
T Consensus 16 iv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~ 84 (343)
T cd04734 16 IVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAE 84 (343)
T ss_pred eEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHH
Confidence 689999988778899999999999999995 89999999999999999999999999999999999864
No 5
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.65 E-value=2.8e-16 Score=117.26 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=64.1
Q ss_pred CEEccCCCCcCCCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSYNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||+++.++||.+|+++++||++||+| +||||+|++.|++.+..+++++++|+|+++++||+|..
T Consensus 16 i~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~ 84 (336)
T cd02932 16 IVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVD 84 (336)
T ss_pred CEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHH
Confidence 689999987777999999999999999996 89999999999999999999999999999999999976
No 6
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.65 E-value=2.5e-16 Score=117.67 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=63.5
Q ss_pred CEEccCCCCcC-CCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCC---CCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRS-YNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLS---ITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~-~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~---~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||+++++ .||.+||++++||++||+| +||||+|++.|++.+..++ +++++|+|+++++||+|-.
T Consensus 17 i~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~l~~ 89 (338)
T cd04733 17 LAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAA 89 (338)
T ss_pred ceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHHHHHHHHHH
Confidence 68999999887 6999999999999999996 8999999999999998888 8999999999999999965
No 7
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.65 E-value=2.5e-16 Score=118.60 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=64.2
Q ss_pred CEEccCCCCcC-CCCCCCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRS-YNNIPRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~-~dG~~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||++.++ +||.+|+++++||++||+|+||||+|++.|++.+..+++++++|+|+++++||+|..
T Consensus 17 iv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~ 85 (353)
T cd04735 17 FVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQ 85 (353)
T ss_pred ceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHHHHHHH
Confidence 69999999887 599999999999999999999999999999999888899999999999999999865
No 8
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.62 E-value=4.6e-16 Score=116.62 Aligned_cols=68 Identities=26% Similarity=0.323 Sum_probs=57.9
Q ss_pred CEEccCCCCcC-CCCCCC-HHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRS-YNNIPR-PHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~-~dG~~t-~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
||||||+++++ ++|.++ +++++||++||+| +||||+|++.|++.+..+++++++|+|+++++||+|..
T Consensus 17 iv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~ 87 (341)
T PF00724_consen 17 IVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLAD 87 (341)
T ss_dssp EEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHH
T ss_pred eEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHHHHHHH
Confidence 68999999887 577554 5999999999995 89999999999999999999999999999999999864
No 9
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.61 E-value=1.8e-15 Score=113.74 Aligned_cols=67 Identities=34% Similarity=0.461 Sum_probs=63.2
Q ss_pred CEEccCCCCcC-CCCCCCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRS-YNNIPRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~-~dG~~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||++..+ +||.+|+++++||++||+| ||||+|++.|++.++..++++++|+|+++++||+|..
T Consensus 17 iv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~ 84 (338)
T cd02933 17 IVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTD 84 (338)
T ss_pred cEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHH
Confidence 69999998877 5999999999999999999 9999999999999999999999999999999999965
No 10
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.60 E-value=2e-15 Score=113.46 Aligned_cols=68 Identities=4% Similarity=-0.064 Sum_probs=62.8
Q ss_pred CEEccCCCCcCCCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSYNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+||||++..+.+|.+|+++++||++||+| +||||+|.+.|++.+..+++++++|+|+++++||+|..
T Consensus 16 iv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~ 84 (353)
T cd02930 16 VLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITD 84 (353)
T ss_pred cEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHH
Confidence 689999976666788999999999999995 89999999999999999999999999999999999865
No 11
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.59 E-value=3.4e-15 Score=112.36 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=63.0
Q ss_pred CEEccCCCCcC--CCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRS--YNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~--~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||++..+ +||.+|+++++||++||+| +||||+|++.|++.+..+++++++|+|+++|+||+|..
T Consensus 18 iv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d 88 (337)
T PRK13523 18 IVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVT 88 (337)
T ss_pred cEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHH
Confidence 68999998765 4899999999999999996 89999999999999998999999999999999999865
No 12
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.56 E-value=7.3e-15 Score=111.63 Aligned_cols=68 Identities=28% Similarity=0.298 Sum_probs=60.3
Q ss_pred CEEccCCCCcCCCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCC-CCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSYNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQG-LSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~-~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||++..+.||.+|+++++||++||+| +||||+|++.|++.+.. +++++++|+|+++|+||++..
T Consensus 16 iv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~~l~d 85 (361)
T cd04747 16 IVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVD 85 (361)
T ss_pred eEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHHHHHH
Confidence 689999988778999999999999999996 89999999999865443 478889999999999999864
No 13
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.56 E-value=6e-15 Score=120.02 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=63.7
Q ss_pred CEEccCCCCcCCCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSYNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+|+||+++++.||.+|+++++||++||+| +||||+|++.|++.+..+++++++|+|+++++||++..
T Consensus 414 i~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~ 482 (765)
T PRK08255 414 VVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVD 482 (765)
T ss_pred ccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHH
Confidence 689999987777999999999999999995 89999999999999999999999999999999999865
No 14
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.55 E-value=1.1e-14 Score=110.31 Aligned_cols=67 Identities=34% Similarity=0.492 Sum_probs=61.3
Q ss_pred CEEccCCCCcC--CCCCCCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRS--YNNIPRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~--~dG~~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
|+||||+++++ ++|.+|+++++||++|| |+||||+|++.|++.+..+++++++|+|+++++||+|-.
T Consensus 18 iv~apm~~~~~~~~~g~~t~~~~~~y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad 86 (362)
T PRK10605 18 VFMAPLTRLRSIEPGDIPTPLMAEYYRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITA 86 (362)
T ss_pred cEECCcCcCccCCCCCCCCHHHHHHHHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHH
Confidence 68999998654 47799999999999999 699999999999999999999999999999999999854
No 15
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.42 E-value=4e-13 Score=102.36 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=56.4
Q ss_pred CEEccCCC-CcC-CCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCC--CC--CccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTR-VRS-YNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGL--SI--TRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~-~~~-~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~--~~--~~~i~~d~~i~~Lk~~~~ 68 (87)
||||||++ ..+ +||.+|+++++||++||+| +||||+|++.|++.+... +. ++.+++|+++++||+|..
T Consensus 16 iv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~k~l~d 90 (382)
T cd02931 16 FAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAFIRTAKEMTE 90 (382)
T ss_pred cEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHHhHHHHHHHH
Confidence 68999987 444 6999999999999999995 899999999999875432 22 446778889999999865
No 16
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.41 E-value=5e-13 Score=101.48 Aligned_cols=66 Identities=8% Similarity=0.047 Sum_probs=55.6
Q ss_pred CEEccCCCCcCCCCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCC-CccCCCHHHHhhHHHhhh
Q 048070 1 IVLAPLTRVRSYNNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSI-TRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 1 IVmAPM~~~~~~dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~-~~~i~~d~~i~~Lk~~~~ 68 (87)
|+||||++..+.++ .+.+++||++||+| +||||+|++.|++.+..+++ ++++|+|+++++||+|..
T Consensus 23 iv~apm~~~~~~~~--~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~ 90 (370)
T cd02929 23 FYQVPHCNGMGYRK--PSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTD 90 (370)
T ss_pred eEECCcccCcCCCC--hHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHH
Confidence 68999988654321 33466899999996 89999999999999888877 799999999999999865
No 17
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=96.04 E-value=0.0013 Score=51.21 Aligned_cols=64 Identities=27% Similarity=0.214 Sum_probs=38.7
Q ss_pred CEEccCCCCcC-CCC--CCCHHHHHHHHHhcc-CCcEEEecccccCCCCCCCCCCccCCCHHHHhhHH
Q 048070 1 IVLAPLTRVRS-YNN--IPRPHSILYYSQRTI-NGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLY 64 (87)
Q Consensus 1 IVmAPM~~~~~-~dG--~~t~~~i~yY~~RAk-GaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk 64 (87)
++++|+++++. +.+ ........||.+|.. ..++||++.+.+.+.+.+....+++|.|++.++++
T Consensus 24 ~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~~~~~~ 91 (400)
T KOG0134|consen 24 FVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQNEEWA 91 (400)
T ss_pred ccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeecccccccC
Confidence 35677777765 222 335666677777766 45666666666666655666666666666555543
No 18
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=94.18 E-value=0.01 Score=46.39 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=57.6
Q ss_pred EccCCCCcCC-CCCCCHHHHHHHHHhccC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcC
Q 048070 3 LAPLTRVRSY-NNIPRPHSILYYSQRTIN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASP 70 (87)
Q Consensus 3 mAPM~~~~~~-dG~~t~~~i~yY~~RAkG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~ 70 (87)
++++..++.. .|.||+.+|.-|..-+-| .|++.++.+.|+|....+++...++.+.+-..+++++.-+
T Consensus 43 ~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~~~~~~~~~~~~~e~~~~~~~ql~~~~ 112 (400)
T KOG0134|consen 43 QSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQNEEWAGNVIAFHENDSFEFRQLWHLG 112 (400)
T ss_pred ccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeecccccccCCceEEEecCCchHHHHHHHhh
Confidence 3445555553 899999999999999886 8999999999999999999999999988888888887654
No 19
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=78.88 E-value=6.2 Score=29.13 Aligned_cols=60 Identities=10% Similarity=-0.047 Sum_probs=42.3
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcC
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASP 70 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~ 70 (87)
+.+|+.+...+||.+..+.++-+.++- +| -|+++.+.+ .....+..+|..+-++.+.+.-
T Consensus 4 v~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~Gst---------GE~~~Ls~~Er~~l~~~~~~~~ 66 (294)
T TIGR02313 4 SIAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTS---------GEPGSLTLEERKQAIENAIDQI 66 (294)
T ss_pred eeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccC---------cccccCCHHHHHHHHHHHHHHh
Confidence 567888877778999876666666653 36 488887754 2355678888888888776543
No 20
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=76.90 E-value=7.2 Score=28.42 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=45.5
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCee-EEEEe
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFG-IMIIV 77 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~-~~~~~ 77 (87)
|++|+.+...+||.+..+.+.-+.++. .| -|+.+.+.+. ....+..+|..+-++.+.+.--| +.+++
T Consensus 2 v~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG---------E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~ 72 (285)
T TIGR00674 2 VITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTG---------ESPTLSHEEHKKVIEFVVDLVNGRVPVIA 72 (285)
T ss_pred ccCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCc---------ccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 567888887778999877777777663 36 4888866541 35567777877777776664333 44444
Q ss_pred C
Q 048070 78 G 78 (87)
Q Consensus 78 ~ 78 (87)
|
T Consensus 73 g 73 (285)
T TIGR00674 73 G 73 (285)
T ss_pred e
Confidence 4
No 21
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family. This uncharacterized protein is found in several Proteobacteria, among them Rhizobium sp. NGR234, Vibrio cholerae, Myxococcus xanthus, and E. coli strain ECOR31. In the latter, it is part of an integrative and conjugative element that is readily induced to excise and circularize.
Probab=74.35 E-value=23 Score=23.66 Aligned_cols=54 Identities=11% Similarity=-0.111 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcC-eeEEEEeCc
Q 048070 18 PHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASP-FGIMIIVGN 79 (87)
Q Consensus 18 ~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~-~~~~~~~~~ 79 (87)
+...++|++++. .+..+|.-.-+|.+.. .-+......|+++++++ .-+|+|||+
T Consensus 60 ~~i~~~~~~s~g--~~~ylGeWHtHP~~~p------~PS~~D~~~~~~~~~~~~~~l~iIvG~ 114 (131)
T TIGR02256 60 SEVDEHFEVSGG--VDTYLGEWHTHPEDQP------EPSWTDRRSWRTIIRSPEAMLLLIVGR 114 (131)
T ss_pred HHHHHHHHHhCC--ceEEEEecCcCCCCCC------CCCHHHHHHHHHHHhCCCeeEEEEEcC
Confidence 344455554432 3666777666665433 33555667888888844 457889997
No 22
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=71.37 E-value=13 Score=27.11 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=39.8
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhcc--C-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRTI--N-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RAk--G-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
+++|+.+...+||.+..+.++-+.++-. | -|+++.+.+ .....+..+|..+-++.+.+.
T Consensus 5 v~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~---------GE~~~ls~~Er~~~~~~~~~~ 66 (292)
T PRK03170 5 SITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTT---------GESPTLTHEEHEELIRAVVEA 66 (292)
T ss_pred eeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcC---------CccccCCHHHHHHHHHHHHHH
Confidence 5677777777788898776666666643 6 488876654 234557777777777766664
No 23
>PLN02417 dihydrodipicolinate synthase
Probab=71.32 E-value=12 Score=27.38 Aligned_cols=62 Identities=6% Similarity=-0.015 Sum_probs=40.3
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCee
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFG 72 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~ 72 (87)
+++|+.|...+||.+..+...-+.++- .| -|+++.+.+. ....+..+|..+-++++.+.--|
T Consensus 5 v~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG---------E~~~ls~~Er~~~~~~~~~~~~~ 69 (280)
T PLN02417 5 LITAIKTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTG---------EGQLMSWDEHIMLIGHTVNCFGG 69 (280)
T ss_pred eeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCc---------chhhCCHHHHHHHHHHHHHHhCC
Confidence 467777777678888765555555542 36 4888877542 35557778888888877765333
No 24
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=70.91 E-value=19 Score=26.31 Aligned_cols=59 Identities=12% Similarity=-0.037 Sum_probs=36.1
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHh--cc-C-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQR--TI-N-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~R--Ak-G-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
+++|+.+...+||.+..+..+-+.++ +. | -|+++.+.+ .....+..+|..+-++.+.+.
T Consensus 4 v~~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~Gst---------GE~~~Lt~~Er~~~~~~~~~~ 66 (288)
T cd00954 4 LIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGST---------GEGFLLSVEERKQIAEIVAEA 66 (288)
T ss_pred eeeceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCC---------cCcccCCHHHHHHHHHHHHHH
Confidence 46777777777788865444433333 23 5 477776654 134557677777777766654
No 25
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=69.17 E-value=16 Score=26.38 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=38.4
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhcc--C-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRTI--N-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RAk--G-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
+.+|+.+...+||.+..+...-+.++.. | -|+++.+.+. ....+..+|..+-++.+.+.
T Consensus 4 v~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstG---------E~~~lt~~Er~~l~~~~~~~ 65 (284)
T cd00950 4 SITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTG---------ESPTLSDEEHEAVIEAVVEA 65 (284)
T ss_pred eeeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCc---------chhhCCHHHHHHHHHHHHHH
Confidence 4567777777788998777776666643 6 4888876541 24456666666666655554
No 26
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=68.28 E-value=15 Score=26.96 Aligned_cols=59 Identities=5% Similarity=-0.171 Sum_probs=38.0
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
+++|+.+...+||.+..+.++-+.++. .| .|+++.+.+ .....+..+|..+-++.+.+.
T Consensus 4 i~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~Gst---------GE~~~Ls~eEr~~l~~~~~~~ 65 (289)
T cd00951 4 LLSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGT---------GEFFSLTPDEYAQVVRAAVEE 65 (289)
T ss_pred eEEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCC---------cCcccCCHHHHHHHHHHHHHH
Confidence 456777766667888765555444443 36 588887764 234557777777777776664
No 27
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=67.66 E-value=18 Score=26.43 Aligned_cols=59 Identities=12% Similarity=-0.026 Sum_probs=38.7
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc---cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT---IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA---kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
+++|+.+...+||.+..+.++-+.++- .| .|+++.+.+ .....+..+|..+-++.+.+.
T Consensus 7 v~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~Gst---------GE~~~Ls~eEr~~~~~~~~~~ 69 (293)
T PRK04147 7 VYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGST---------GEAFLLSTEEKKQVLEIVAEE 69 (293)
T ss_pred eeeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCc---------cccccCCHHHHHHHHHHHHHH
Confidence 467777777778888765555555552 35 478877644 134557778888777777654
No 28
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=66.13 E-value=18 Score=26.97 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=42.6
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhcc--C-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCee
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRTI--N-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFG 72 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RAk--G-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~ 72 (87)
+++|+.|...+||.+..+...-..++-. | -|+++.+.+. ..+.+..+|+.+-++.+.+.--|
T Consensus 8 vi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttG---------E~~~Ls~eEr~~v~~~~v~~~~g 72 (299)
T COG0329 8 VIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTG---------ESPTLTLEERKEVLEAVVEAVGG 72 (299)
T ss_pred ceeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCc---------cchhcCHHHHHHHHHHHHHHHCC
Confidence 4566766666678898776666666633 6 5888888652 35567788888887777766555
No 29
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=65.24 E-value=18 Score=26.02 Aligned_cols=58 Identities=10% Similarity=0.011 Sum_probs=37.5
Q ss_pred EccCCCCcCCCCCCCHHHHHHHHHhcc--C-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 3 LAPLTRVRSYNNIPRPHSILYYSQRTI--N-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 3 mAPM~~~~~~dG~~t~~~i~yY~~RAk--G-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
.+|+.+...+||.+..+.++-+.++.. | -|+.+.+.+ .....+..+|..+-++.+.+.
T Consensus 2 ~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~Gst---------GE~~~ls~~Er~~l~~~~~~~ 62 (281)
T cd00408 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTT---------GEAPTLTDEERKEVIEAVVEA 62 (281)
T ss_pred CCCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCC---------cccccCCHHHHHHHHHHHHHH
Confidence 466767777788888666666665533 6 477776654 234556667777777766654
No 30
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=61.16 E-value=41 Score=21.60 Aligned_cols=28 Identities=4% Similarity=-0.020 Sum_probs=21.3
Q ss_pred HHHHHHHHHhccC-CcEEEecccccCCCC
Q 048070 18 PHSILYYSQRTIN-GGFLIAEATGVSDTA 45 (87)
Q Consensus 18 ~~~i~yY~~RAkG-aGLIIte~~~V~~~g 45 (87)
+...++++..+++ ++++.++....++..
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~ 40 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEE 40 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECccc
Confidence 7888899998884 788888877655443
No 31
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=60.97 E-value=27 Score=25.63 Aligned_cols=59 Identities=7% Similarity=-0.137 Sum_probs=37.9
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhcc--C-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRTI--N-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RAk--G-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
+.+|+.+...+||.+..+.+.-+.++.. | -|+.+.+.+. ....+..+|..+-++++.+.
T Consensus 9 i~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstG---------E~~~Lt~eEr~~v~~~~~~~ 70 (296)
T TIGR03249 9 LLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTG---------EFFSLTPAEYEQVVEIAVST 70 (296)
T ss_pred eEEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCc---------CcccCCHHHHHHHHHHHHHH
Confidence 3456666666788887666666666543 6 4888877552 35557677777666666554
No 32
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=60.29 E-value=28 Score=25.68 Aligned_cols=59 Identities=7% Similarity=-0.148 Sum_probs=38.5
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS 69 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~ 69 (87)
+++|+.+...+||.+..+.++-+.++- .| -|+++.+.+. ....+..+|..+-++.+.+.
T Consensus 11 v~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstG---------E~~~Lt~eEr~~~~~~~~~~ 72 (303)
T PRK03620 11 LLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTG---------EFFSLTPDEYSQVVRAAVET 72 (303)
T ss_pred eEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCc---------CcccCCHHHHHHHHHHHHHH
Confidence 567777777778888765555555543 36 4888877542 34557777777777776653
No 33
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=58.85 E-value=29 Score=25.52 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=40.1
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-C-cEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhc---CeeEE
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-G-GFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFAS---PFGIM 74 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-a-GLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~---~~~~~ 74 (87)
+.+|+.+...+||.+..+.+.-+.++. .| + |+++.+.+. ....+..+|..+-++.+.+. .+-++
T Consensus 4 v~~~~~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstG---------E~~~Lt~eEr~~~~~~~~~~~~~~~pvi 74 (290)
T TIGR00683 4 IFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTG---------ENFMLSTEEKKEIFRIAKDEAKDQIALI 74 (290)
T ss_pred eEeeeecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCccc---------ccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 466777777778888866666555553 35 4 777766541 24456666666655555543 34444
Q ss_pred EEeC
Q 048070 75 IIVG 78 (87)
Q Consensus 75 ~~~~ 78 (87)
.-||
T Consensus 75 ~gv~ 78 (290)
T TIGR00683 75 AQVG 78 (290)
T ss_pred EecC
Confidence 4444
No 34
>PTZ00378 hypothetical protein; Provisional
Probab=54.40 E-value=14 Score=30.16 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHhccC-Cc-EEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCeeEEEEeCc-EEEE-ecc
Q 048070 16 PRPHSILYYSQRTIN-GG-FLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFGIMIIVGN-LLVQ-NYD 86 (87)
Q Consensus 16 ~t~~~i~yY~~RAkG-aG-LIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~~~~~~~~-~~~~-~~~ 86 (87)
-++++++||++-.+- .. ++-+|.. .+++.-++|++|-+.--.-..|||. |+|. |++
T Consensus 327 t~~elieyy~~li~kYP~iIvsIEDp---------------~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ 386 (518)
T PTZ00378 327 TGDQLSEYVREQLQAVPDIVVYVEDT---------------HCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYK 386 (518)
T ss_pred CHHHHHHHHHHHHHHCCCceEEEecC---------------CCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHH
Confidence 379999999999885 34 4445643 2566778999988887666778887 8888 553
No 35
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=44.41 E-value=69 Score=23.30 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=17.7
Q ss_pred CHHHHHHHHHhccCCcEEEecccccCC
Q 048070 17 RPHSILYYSQRTINGGFLIAEATGVSD 43 (87)
Q Consensus 17 t~~~i~yY~~RAkGaGLIIte~~~V~~ 43 (87)
+++.+..+.+. |+|+++++....++
T Consensus 24 ~~~~~~~~~~~--G~g~iv~kt~~~~~ 48 (300)
T TIGR01037 24 GVESLRRIDRS--GAGAVVTKSIGLEP 48 (300)
T ss_pred CHHHHHHHHHc--CCcEEEeCcccccc
Confidence 66666655443 68999999887764
No 36
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=44.05 E-value=61 Score=24.07 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCee-EEEEeC
Q 048070 13 NNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFG-IMIIVG 78 (87)
Q Consensus 13 dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~-~~~~~~ 78 (87)
+|.+..+.++-+.++- .| -|+++.+.+ .....+.++|..+-++.+.+.--| +-+|+|
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~Gst---------GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~G 83 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTF---------GECATLTWEEKQAFVATVVETVAGRVPVFVG 83 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccc---------ccchhCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4888876666666653 36 488887765 235567777777777776654333 333443
No 37
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=41.22 E-value=1.1e+02 Score=22.22 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=40.5
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCeeEEEEeC
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFGIMIIVG 78 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~~~~~~~ 78 (87)
+.+|+.+...+ |.+..+.++-+.++- +| -|+++.+.+. ....+..+|..+-++.+.+..-+++.-||
T Consensus 4 v~~a~~TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstG---------E~~~Lt~eEr~~l~~~~~~~~~~vi~gvg 73 (279)
T cd00953 4 KITPVITPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTG---------LGPSLSFQEKLELLKAYSDITDKVIFQVG 73 (279)
T ss_pred cccceecCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCC---------CcccCCHHHHHHHHHHHHHHcCCEEEEeC
Confidence 45666666555 777655555555542 36 4888877652 35567777777777777665434444444
No 38
>PRK12863 YciI-like protein; Reviewed
Probab=38.91 E-value=43 Score=20.42 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=28.3
Q ss_pred CHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhh-hcCee
Q 048070 17 RPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVF-ASPFG 72 (87)
Q Consensus 17 t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~-~~~~~ 72 (87)
-+++++|..+. + |.++..+...++.+....+...+.+-+..+..++++ +.||-
T Consensus 21 r~~H~~~l~~~-~--g~~l~~Gp~~~~~g~~~~G~~~i~~a~~~eea~~~~~~DP~~ 74 (94)
T PRK12863 21 RPAHLAYLETL-E--GRLLAAGPLLDDDGKPMVGSLVVVEAESRAAAEAFAAADPFA 74 (94)
T ss_pred HHHHHHHHHHh-C--CeEEEeCCCcCCCCCCccceEEEEEeCCHHHHHHHHHcCChh
Confidence 46788888877 4 344444444554443333455554434445555554 45663
No 39
>PF15054 DUF4535: Domain of unknown function (DUF4535)
Probab=38.43 E-value=23 Score=19.66 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=13.5
Q ss_pred CeeEEEEeCcEEEEecc
Q 048070 70 PFGIMIIVGNLLVQNYD 86 (87)
Q Consensus 70 ~~~~~~~~~~~~~~~~~ 86 (87)
.|++-..+|=-+.|||+
T Consensus 5 sF~~G~~~GiY~AQNY~ 21 (46)
T PF15054_consen 5 SFGAGTYTGIYVAQNYE 21 (46)
T ss_pred EEeeccEEEEEeeeccc
Confidence 46666778888999997
No 40
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=38.01 E-value=1.1e+02 Score=22.09 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=32.5
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhc--cC-CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRT--IN-GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RA--kG-aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
+++|+.|...+||.+..+...-+.++- .| -|+++.+.+. ....+..+|..+-++.+..
T Consensus 5 i~~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstG---------E~~~Lt~~Er~~l~~~~~~ 65 (289)
T PF00701_consen 5 IFPALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTG---------EFYSLTDEERKELLEIVVE 65 (289)
T ss_dssp EEEEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTT---------TGGGS-HHHHHHHHHHHHH
T ss_pred eeeeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCc---------ccccCCHHHHHHHHHHHHH
Confidence 456666666678888766665555553 36 5888877541 3445666666665555544
No 41
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=32.81 E-value=35 Score=19.13 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHhcc
Q 048070 15 IPRPHSILYYSQRTI 29 (87)
Q Consensus 15 ~~t~~~i~yY~~RAk 29 (87)
.....+++||++|..
T Consensus 38 k~P~~vI~FYE~~l~ 52 (54)
T cd00034 38 KCPLLVISFYEEHLT 52 (54)
T ss_pred hCcHHHHHHHHHhcc
Confidence 346789999999864
No 42
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.98 E-value=50 Score=22.31 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCe
Q 048070 14 NIPRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPF 71 (87)
Q Consensus 14 G~~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~ 71 (87)
|.|.++...+.-.+.-++++++.-+..++-.++.....|.....-.++-|.+++..|.
T Consensus 110 G~PkQE~~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP~w~~~~glEWlyRl~~eP~ 167 (172)
T PF03808_consen 110 GAPKQERWIARHRQRLPAGVIIGVGGAFDFLAGKVKRAPKWMRRLGLEWLYRLLQEPK 167 (172)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECchhhhhccCcCccCHHHHHcCcHHHHHHHhChH
Confidence 5565443333333222355666555555544445667777777888888888888774
No 43
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=30.37 E-value=60 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCHHHHhhHHHhhhcCeeEEEEeCc
Q 048070 55 FLNARLWYLYWVFASPFGIMIIVGN 79 (87)
Q Consensus 55 ~~d~~i~~Lk~~~~~~~~~~~~~~~ 79 (87)
..+++++.|++++..|-|++++.|-
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGp 250 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGP 250 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 4688999999999999999999873
No 44
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=29.78 E-value=68 Score=23.28 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=21.6
Q ss_pred CCHHHHhhHHHhhhcCeeEEEEeC
Q 048070 55 FLNARLWYLYWVFASPFGIMIIVG 78 (87)
Q Consensus 55 ~~d~~i~~Lk~~~~~~~~~~~~~~ 78 (87)
+.+++++.|++++..+-|+.+|.|
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG 87 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTG 87 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEC
Confidence 578899999999999999999887
No 45
>PRK01160 hypothetical protein; Provisional
Probab=29.44 E-value=37 Score=23.93 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=13.0
Q ss_pred hhHHHhhhcCeeEEE
Q 048070 61 WYLYWVFASPFGIMI 75 (87)
Q Consensus 61 ~~Lk~~~~~~~~~~~ 75 (87)
+.||+.||.|||..+
T Consensus 9 ~~lR~eLk~P~G~l~ 23 (178)
T PRK01160 9 PELRQELKKPLGELV 23 (178)
T ss_pred HHHHHHHhcCCceeE
Confidence 579999999999865
No 46
>smart00300 ChSh Chromo Shadow Domain.
Probab=29.30 E-value=43 Score=19.18 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHhcc
Q 048070 16 PRPHSILYYSQRTI 29 (87)
Q Consensus 16 ~t~~~i~yY~~RAk 29 (87)
....+|+||++|..
T Consensus 45 ~P~~vI~FYE~~l~ 58 (61)
T smart00300 45 CPQKVIRFYESHLT 58 (61)
T ss_pred ChHHHHHHHHHhCc
Confidence 45789999999965
No 47
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=28.38 E-value=44 Score=19.06 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=9.5
Q ss_pred CHHHHHHHHHhc
Q 048070 17 RPHSILYYSQRT 28 (87)
Q Consensus 17 t~~~i~yY~~RA 28 (87)
...+++||++|-
T Consensus 43 Pq~vI~FYE~~l 54 (58)
T PF01393_consen 43 PQKVIKFYESHL 54 (58)
T ss_dssp HHHHHHHHHHTC
T ss_pred cHHHHHHHHHHe
Confidence 457899999984
No 48
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=27.60 E-value=47 Score=22.76 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.3
Q ss_pred CCCHHHHhhHHHhhhcCe
Q 048070 54 SFLNARLWYLYWVFASPF 71 (87)
Q Consensus 54 i~~d~~i~~Lk~~~~~~~ 71 (87)
-|+|+.++.||+|.+.-+
T Consensus 2 ~Wtde~~~~L~~lw~~G~ 19 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEGL 19 (162)
T ss_pred CCCHHHHHHHHHHHHcCC
Confidence 389999999999987644
No 49
>PRK10436 hypothetical protein; Provisional
Probab=27.51 E-value=67 Score=25.57 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCHHHHhhHHHhhhcCeeEEEEeC
Q 048070 55 FLNARLWYLYWVFASPFGIMIIVG 78 (87)
Q Consensus 55 ~~d~~i~~Lk~~~~~~~~~~~~~~ 78 (87)
..+++++.|+++++.|-|+.++.|
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtG 225 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTG 225 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEC
Confidence 467889999999999999999987
No 50
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=27.22 E-value=1.9e+02 Score=22.00 Aligned_cols=40 Identities=15% Similarity=0.003 Sum_probs=26.4
Q ss_pred CcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCeeEEEEe
Q 048070 31 GGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFGIMIIV 77 (87)
Q Consensus 31 aGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~~~~~~ 77 (87)
.+.||+|+.. . ..+....+++++++.|+++-+. .|+++|+
T Consensus 200 iaavi~Ep~i-~-----~~gG~~~~~~~~l~~l~~lc~~-~g~llI~ 239 (423)
T PRK05964 200 IAAFIVEPLV-Q-----GAGGMLFYDPRYLAELRRICDR-HGVLLIF 239 (423)
T ss_pred EEEEEEeccc-c-----cCCCcccCCHHHHHHHHHHHHH-cCCEEEE
Confidence 5677778531 1 1123456789999999999887 5666554
No 51
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.66 E-value=1.5e+02 Score=21.23 Aligned_cols=61 Identities=23% Similarity=0.200 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCeeEEEEe
Q 048070 16 PRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFASPFGIMIIV 77 (87)
Q Consensus 16 ~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~~~~~~~ 77 (87)
+++.++++-.+|......++.......-....+.-...++.+...+.++++++ |-|.++++
T Consensus 120 ~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~~e~~rvLk-pgG~li~~ 180 (272)
T PRK11088 120 ISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPCKAEELARVVK-PGGIVITV 180 (272)
T ss_pred CCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCCCHHHHHhhcc-CCCEEEEE
Confidence 45666666555533333333322221111112333334555667788899887 66887776
No 52
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.45 E-value=69 Score=21.64 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=23.0
Q ss_pred CcEEEe-cccccCCCCCCCCCCccCCCHHHHhhHHHhhhcCe
Q 048070 31 GGFLIA-EATGVSDTAQGLSITRNSFLNARLWYLYWVFASPF 71 (87)
Q Consensus 31 aGLIIt-e~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~~~~ 71 (87)
.+++++ |++ .+-.++...+.|.......++-|.+++..|.
T Consensus 125 ~~v~~~vG~~-~d~~aG~~~raP~w~~~~glEWlyRl~~eP~ 165 (171)
T cd06533 125 VPVAIGVGGS-FDFLAGTVKRAPKWMQKLGLEWLYRLLQEPR 165 (171)
T ss_pred CCEEEEecee-eEeccCCcccCcHHHHHhCchhHHhhhhCcc
Confidence 444443 443 4433334455666666677777777777774
No 53
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=23.93 E-value=2.8e+02 Score=19.95 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=38.8
Q ss_pred EEccCCCCcCCCCCCCHHHHHHHHHhcc-CCcEEEeccc-----------ccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 2 VLAPLTRVRSYNNIPRPHSILYYSQRTI-NGGFLIAEAT-----------GVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 2 VmAPM~~~~~~dG~~t~~~i~yY~~RAk-GaGLIIte~~-----------~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
+.+||. |-.+...+.+|...-++ |-.+=.+|.- .++..|+.+...+. +-|.+.+.||.+|.
T Consensus 93 i~~PM~-----Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~-~~~~~~~YLr~ilg 165 (202)
T COG1182 93 IAAPMY-----NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPA-SMDHGEPYLRTILG 165 (202)
T ss_pred EEeccc-----ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCcc-chhhhHHHHHHHhh
Confidence 456776 45567788888887766 3333333332 23445555555555 57788999999985
No 54
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.70 E-value=1.6e+02 Score=18.22 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhh
Q 048070 15 IPRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVF 67 (87)
Q Consensus 15 ~~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~ 67 (87)
-+|...+.||+++ ||+. +..++ ..+....|+++++..++++.
T Consensus 11 gis~~tlR~ye~~----GLi~--p~~~~-----~~ngyR~Y~~~~i~~l~~I~ 52 (108)
T cd01107 11 NLSIKALRYYDKI----GLLK--PAYVD-----PDTGYRYYSAEQLERLNRIK 52 (108)
T ss_pred CcCHHHHHHHHHc----CCCC--CCcCC-----CCCCccccCHHHHHHHHHHH
Confidence 4678899999996 3342 11111 12455688998888887653
No 55
>PRK13749 transcriptional regulator MerD; Provisional
Probab=23.02 E-value=1.2e+02 Score=19.80 Aligned_cols=45 Identities=24% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHhccCCcEEEecccccCCCCCCCCCCccCCCHHHHhhHHHhhh
Q 048070 12 YNNIPRPHSILYYSQRTINGGFLIAEATGVSDTAQGLSITRNSFLNARLWYLYWVFA 68 (87)
Q Consensus 12 ~dG~~t~~~i~yY~~RAkGaGLIIte~~~V~~~g~~~~~~~~i~~d~~i~~Lk~~~~ 68 (87)
...-+|.+.+.||++..- +- |..+ ..+....|++++++.|+.+..
T Consensus 11 ~~~gvS~~tiR~YE~~GL----l~-------p~~r-~~~gyR~Y~~~~l~rL~~I~~ 55 (121)
T PRK13749 11 LDAGVSVHIVRDYLLRGL----LR-------PVAC-TTGGYGLFDDAALQRLCFVRA 55 (121)
T ss_pred HHHCCCHHHHHHHHHCCC----CC-------CCCc-CCCCCccCCHHHHHHHHHHHH
Confidence 356688999999998733 21 1111 135667999999999987763
No 56
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=22.05 E-value=96 Score=25.13 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCHHHHhhHHHhhhcCeeEEEEeC
Q 048070 55 FLNARLWYLYWVFASPFGIMIIVG 78 (87)
Q Consensus 55 ~~d~~i~~Lk~~~~~~~~~~~~~~ 78 (87)
+.+++++.|++++..|-|++++.|
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G 323 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTG 323 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEC
Confidence 468889999999999999999987
No 57
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=21.21 E-value=56 Score=25.97 Aligned_cols=19 Identities=16% Similarity=0.245 Sum_probs=16.8
Q ss_pred CHHHHhhHHHhhhcCeeEE
Q 048070 56 LNARLWYLYWVFASPFGIM 74 (87)
Q Consensus 56 ~d~~i~~Lk~~~~~~~~~~ 74 (87)
.|++|+-+|-|+|.||-.-
T Consensus 16 rD~fIewIKgLLAvpFVLh 34 (408)
T PF06437_consen 16 RDQFIEWIKGLLAVPFVLH 34 (408)
T ss_pred chhhHHHHHHhhcCCeeec
Confidence 5999999999999999653
Done!