BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048073
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 192 bits (488), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 88/136 (64%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Query: 28 QNSPQDYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGGPYGENLAKG 87
QNSPQDYL HN ARA V V + W+ +A+ AQNY+NSR DCNL+HSG GENLAKG
Sbjct: 1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA--GENLAKG 58
Query: 88 SGTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWWF 147
G FTG AAV LWV+E+ +YNY+TN C GK C HYTQVVWRNS+R+GC R +C+NGWWF
Sbjct: 59 GGDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGWWF 118
Query: 148 VTCSYDPPGNYIGQKP 163
++C+YDP GN+IGQ+P
Sbjct: 119 ISCNYDPVGNWIGQRP 134
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 33 DYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSN----SRIADCNLVHSGGPYGENLAKGS 88
+ L AHN R VP + + AQ YS +RI + S G GENLA S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 89 GTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWWFV 148
TG W +E NYN+ +G GH+T +VW+N+ ++G + S+G FV
Sbjct: 72 YDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSSFV 129
Query: 149 TCSYDPPGNYIGQ 161
Y P GN + +
Sbjct: 130 VARYFPAGNVVNE 142
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 33 DYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSN----SRIADCNLVHSGGPYGENLAKGS 88
+ L AHN R VP + + AQ YS +RI + S G GENLA S
Sbjct: 12 EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 89 GTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWWFV 148
TG W +E NYN+ +G GH+T +VW+N+ ++G + S+G FV
Sbjct: 72 YDQTGKEVADRWYSEIKNYNFQQPGFTSG--TGHFTAMVWKNTKKMGVGKASASDGSSFV 129
Query: 149 TCSYDPPGNYIGQ 161
Y P GN + +
Sbjct: 130 VARYFPAGNVVNE 142
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 25 SHAQNSPQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYSNSRIADCNLVHSGGP 79
S+ +N ++ +D HN+ R +V + + WN A A+ ++N C HS
Sbjct: 1 SNKKNYQKEIVDKHNALRRSVKPTARNMLQMKWNSRAAQNAKRWANR----CTFAHSPPN 56
Query: 80 Y--------GENLAKGSGTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNS 131
GEN+ S F + V W E N+ Y G V GHYTQVVW S
Sbjct: 57 KRTVGKLRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKS 116
Query: 132 IRVGCARVQCSNGWWFVTCSYDPPGNYIG 160
+GCA +CS+ + C Y P GN G
Sbjct: 117 YLIGCASAKCSSSKYLYVCQYCPAGNIRG 145
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 23 QTSHAQNSPQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYSNSRIADCNLVHS- 76
+++ + ++ +D HNS R V + + W A+ A+ ++N+ C+L HS
Sbjct: 7 ESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CSLNHSP 62
Query: 77 -------GGPYGENLAKGSGTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWR 129
G GE++ S T T + LW E N+ Y G V GHYTQ+VW
Sbjct: 63 DNLRVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWY 122
Query: 130 NSIRVGCARVQCSNGWW--FVTCSYDPPGNYIGQ 161
+ R GCA C + W F C Y P GN+ G+
Sbjct: 123 QTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGK 156
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 23 QTSHAQNSPQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYSNSRIADCNLVHS- 76
+++ + ++ +D HNS R V + + W A+ A+ ++N+ C+L HS
Sbjct: 7 ESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANT----CSLNHSP 62
Query: 77 -------GGPYGENLAKGSGTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWR 129
G GE++ S T T + LW E N+ Y G V GHYTQ+VW
Sbjct: 63 DNLRVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWY 122
Query: 130 NSIRVGCARVQCSNGWW--FVTCSYDPPGNYIGQ 161
+ R GCA C + W F C Y P GN+ G+
Sbjct: 123 QTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGK 156
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 16 GSLALLIQTSHAQNSPQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYS------ 64
A ++ ++ +D + HN R+ V + + W+ +A A+ ++
Sbjct: 4 AEFANILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFS 63
Query: 65 -NSRIADCNLVHSG-GPYGENLAKGS-GTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCG 121
N+R+ + +H GEN+ GS F+ ++A++ W E +Y++ T C KVCG
Sbjct: 64 HNTRLKPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK--KVCG 121
Query: 122 HYTQVVWRNSIRVGCARVQC---------SNGWWFVTCSYDPPGNY 158
HYTQVVW +S +VGCA C SNG F+ C+Y P GNY
Sbjct: 122 HYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFI-CNYGPGGNY 166
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 17/146 (11%)
Query: 28 QNSPQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG---- 78
+N ++ +D HN+ R +V + + WN A A+ +++ C HS
Sbjct: 3 KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADR----CTFAHSPPNTRT 58
Query: 79 ----PYGENLAKGSGTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRV 134
GEN+ S F + V W E N+ Y G V GHYTQVVW S +
Sbjct: 59 VGKLRCGENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLI 118
Query: 135 GCARVQCSNGWWFVTCSYDPPGNYIG 160
GCA +CS+ + C Y P GN G
Sbjct: 119 GCASAKCSSSKYLYVCQYCPAGNIRG 144
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 33 DYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYS----NSRIADCNLVHSGGPYGEN 83
+ +D HNS R +V + + W AA A+ ++ S + + V G GEN
Sbjct: 17 EIIDLHNSLRRSVNPTASNMLKMEWYPEAAANAERWAYRCIESHSSRDSRVIGGIKCGEN 76
Query: 84 LAKGSGTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQC-- 141
+ + T + W E ++ Y + V GHYTQ+VW S R GCA C
Sbjct: 77 IYMATYPAKWTDIIHAWHGEYKDFKYGVGAVPSDAVIGHYTQIVWYKSYRAGCAAAYCPS 136
Query: 142 SNGWWFVTCSYDPPGNYIGQ 161
S +F C Y P GN IG+
Sbjct: 137 SKYSYFYVCQYCPAGNIIGK 156
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 81 GENLAKGSGTFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQ 140
GEN+ T + W E ++ Y V GHYTQ+VW S R+GCA
Sbjct: 74 GENIYMSPYPMKWTDIIHAWHDEYKDFKYGVGADPPNAVTGHYTQIVWYKSYRIGCAAAY 133
Query: 141 CSNGW--WFVTCSYDPPGNYIGQ 161
C + +F C Y P GN+IG+
Sbjct: 134 CPSSPYSYFFVCQYCPAGNFIGK 156
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 49/193 (25%)
Query: 13 CFMGSLA------LLIQTSHAQNSPQDYLDAHNSARAAVY-----------------VPN 49
C GSL +++ + QD L HN R + + N
Sbjct: 22 CKYGSLKPNCGNKVVVSYGLTKQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKN 81
Query: 50 IIWNDTVAAYAQNYSNSRIADCNLVHSGGPY--GENLAKGSGTFTGTAA---------VS 98
++WND +A AQ ++N + Y G+N+A TG+ A V
Sbjct: 82 LVWNDELAYVAQVWANQCQYGHDTCRDVAKYQVGQNVA-----LTGSTAAKYDDPVKLVK 136
Query: 99 LWVAEKANYN----YSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWW---FVTCS 151
+W E +YN +S N GHYTQ+VW N+ VGC ++ W ++ C+
Sbjct: 137 MWEDEVKDYNPKKKFSGNDFLK---TGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCN 193
Query: 152 YDPPGNYIGQKPY 164
Y P GN+ ++ Y
Sbjct: 194 YGPSGNFKNEELY 206
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 44 AVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSG------GPYGENLA----KGSGTFTG 93
AV +PN+ W+ +A AQ ++N C H G+N+A G T
Sbjct: 73 AVKMPNLTWDPELATIAQRWANQ----CTFEHDACRNVERFAVGQNIAATSSSGKNKSTP 128
Query: 94 TAAVSLWVAEKANYN------YSTNTCAAGKVCGHYTQVVWRNSIRVGCARV--QCSNGW 145
+ LW E +++ + ++ KV GHYTQ+VW + ++GC R+ + + W
Sbjct: 129 NEMILLWYNEVKDFDNRWISSFPSDDNILMKV-GHYTQIVWAKTTKIGCGRIMFKEPDNW 187
Query: 146 --WFVTCSYDPPGNYIGQKPY 164
++ C+Y P GN +G Y
Sbjct: 188 TKHYLVCNYGPAGNVLGAPIY 208
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Query: 27 AQNSPQDYLDAHNSARAAVYV-----------PNIIWNDTVA--AYAQNYSNSRIADCNL 73
++ + Q +L+ HNS R++V + P T+A + + + C
Sbjct: 13 SEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVF 72
Query: 74 VHSG----GPYGEN--LAKGSGTFTGTAAV---SLWVAEKANYNYSTNTCAAG----KVC 120
HS GEN ++ SG AA W E A N G +
Sbjct: 73 KHSQPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGV 132
Query: 121 GHYTQVVWRNSIRVGCARVQCSNGWWFVTCSYDPPGNYIGQKPY 164
GHYTQ+VW+ ++++GC CSN +V C Y P GN +G+ Y
Sbjct: 133 GHYTQMVWQETVKLGCYVEACSN-MCYVVCQYGPAGNMMGKDIY 175
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 121 GHYTQVVWRNSIRVGCARVQCSNGWWFVTCSYDPPGNYIGQKPY 164
GHYTQ+ W + ++GCA V C N + F C Y P GNY+G Y
Sbjct: 357 GHYTQMAWDTTYKLGCAVVFC-NDFTFGVCQYGPGGNYMGHVIY 399
>pdb|3L21|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|C Chain C, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|D Chain D, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|E Chain E, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|F Chain F, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
Length = 304
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 5 SISLALAICFMGSLALLIQTSHAQNSPQDYLDAHNSARA-AVYVPNIIWN---------- 53
SI LA A G+ LL+ T + PQ L AH +A A A +P ++++
Sbjct: 99 SIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIE 158
Query: 54 -DTVAAYAQNYSNSRIADCNL-VHSG 77
DT+ A A + + + D +HSG
Sbjct: 159 PDTIRALASHPNIVGVXDAKADLHSG 184
>pdb|1XXX|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|F Chain F, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|G Chain G, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|H Chain H, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
Length = 303
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 5 SISLALAICFMGSLALLIQTSHAQNSPQDYLDAHNSARA-AVYVPNIIWN---------- 53
SI LA A G+ LL+ T + PQ L AH +A A A +P ++++
Sbjct: 98 SIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIE 157
Query: 54 -DTVAAYAQNYSNSRIADCNL-VHSG 77
DT+ A A + + + D +HSG
Sbjct: 158 PDTIRALASHPNIVGVKDAKADLHSG 183
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 146 WFVTCSYDPPGNYI 159
W +TC+Y P GNY+
Sbjct: 110 WVMTCAYAPSGNYV 123
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 146 WFVTCSYDPPGNYI 159
W +TC+Y P GNY+
Sbjct: 99 WVMTCAYAPSGNYV 112
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 146 WFVTCSYDPPGNYI 159
W +TC+Y P GNY+
Sbjct: 99 WVMTCAYAPSGNYV 112
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 146 WFVTCSYDPPGNYI 159
W +TC+Y P GNY+
Sbjct: 99 WVMTCAYAPSGNYV 112
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 146 WFVTCSYDPPGNYI 159
W +TC+Y P GNY+
Sbjct: 99 WVMTCAYAPSGNYV 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,342,947
Number of Sequences: 62578
Number of extensions: 214121
Number of successful extensions: 460
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 22
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)