Query         048073
Match_columns 164
No_of_seqs    110 out of 1144
Neff          9.1 
Searched_HMMs 46136
Date          Fri Mar 29 06:01:22 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048073hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 1.2E-41 2.7E-46  236.6  15.7  133   32-164     2-136 (136)
  2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 1.9E-37 4.1E-42  213.7  14.4  128   29-160     1-129 (129)
  3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 6.4E-37 1.4E-41  211.6  12.3  128   29-158     1-132 (132)
  4 cd05383 SCP_CRISP SCP_CRISP: S 100.0 1.3E-34 2.8E-39  201.8  12.7  122   30-155     2-138 (138)
  5 smart00198 SCP SCP / Tpx-1 / A 100.0 2.2E-34 4.8E-39  201.7  12.3  122   30-155     2-144 (144)
  6 cd05385 SCP_GLIPR-1_like SCP_G 100.0 5.3E-34 1.2E-38  200.0  13.2  121   29-155     1-144 (144)
  7 cd00168 SCP SCP: SCP-like extr 100.0 1.4E-32 3.1E-37  187.6  12.6  117   31-153     1-122 (122)
  8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 9.9E-33 2.1E-37  191.9  12.0  119   31-153     1-136 (136)
  9 KOG3017 Defense-related protei 100.0 4.2E-33 9.1E-38  208.6   8.7  132   29-164    40-198 (225)
 10 cd05380 SCP_euk SCP_euk: SCP-l 100.0 1.6E-31 3.6E-36  186.6  10.9  119   31-153     1-144 (144)
 11 PF00188 CAP:  Cysteine-rich se  99.9 8.5E-22 1.8E-26  131.7  10.2  114   35-152     1-124 (124)
 12 TIGR02909 spore_YkwD uncharact  99.8 7.5E-19 1.6E-23  120.7  11.3  107   29-153     3-126 (127)
 13 cd05379 SCP_bacterial SCP_bact  99.7 1.6E-15 3.4E-20  102.5  10.2  103   32-152     2-121 (122)
 14 COG2340 Uncharacterized protei  99.2 9.8E-11 2.1E-15   86.7   8.4  100   27-143    77-193 (207)
 15 PF11054 Surface_antigen:  Spor  76.0      33 0.00071   26.2   8.9  130   30-164    34-218 (254)
 16 PRK09458 pspB phage shock prot  69.4      12 0.00026   23.1   3.9   17   26-42     36-52  (75)
 17 PF11714 Inhibitor_I53:  Thromb  58.4      11 0.00024   22.8   2.2   18    1-19      1-18  (78)
 18 COG3026 RseB Negative regulato  52.7      28 0.00062   27.3   4.2   42    1-46      1-42  (320)
 19 PRK11289 ampC beta-lactamase/D  49.2      20 0.00044   29.1   3.2   44    1-45      2-46  (384)
 20 PF06667 PspB:  Phage shock pro  49.0      46 0.00099   20.5   4.0   10   29-38     39-48  (75)
 21 TIGR02976 phageshock_pspB phag  47.9      48   0.001   20.4   4.0   11    1-11      1-11  (75)
 22 TIGR02209 ftsL_broad cell divi  47.6      23 0.00051   21.8   2.7   11    1-11      1-11  (85)
 23 KOG4439 RNA polymerase II tran  47.0      20 0.00043   31.8   2.9   44   24-67    778-843 (901)
 24 PRK14857 tatA twin arginine tr  45.5      33 0.00072   21.9   3.1   46    1-46      1-46  (90)
 25 PF11471 Sugarporin_N:  Maltopo  45.3      35 0.00077   20.0   3.0   11    1-11      1-11  (60)
 26 PF12273 RCR:  Chitin synthesis  44.0      48   0.001   22.4   4.0   23   35-57     19-41  (130)
 27 PF03032 Brevenin:  Brevenin/es  43.7      13 0.00029   20.6   0.9    6   13-18     11-16  (46)
 28 KOG0286 G-protein beta subunit  43.3      17 0.00037   28.6   1.8   34  124-158    78-111 (343)
 29 PF04648 MF_alpha:  Yeast matin  43.1      13 0.00029   14.8   0.7    6  159-164     8-13  (13)
 30 TIGR03044 PS_II_psb27 photosys  43.1      32  0.0007   23.7   2.9   29   24-52     31-59  (135)
 31 PRK10780 periplasmic chaperone  42.3      46 0.00099   23.5   3.8   43    1-44      1-44  (165)
 32 PF11912 DUF3430:  Protein of u  42.1      20 0.00044   26.2   2.0   11    1-11      1-11  (212)
 33 PF04863 EGF_alliinase:  Alliin  42.1      29 0.00062   20.0   2.2   21   50-73      1-21  (56)
 34 PRK10598 lipoprotein; Provisio  41.4      24 0.00051   25.8   2.2   25   24-48     25-49  (186)
 35 smart00190 IL4_13 Interleukins  34.3      51  0.0011   22.9   2.8   54    1-54      1-57  (138)
 36 COG3909 Cytochrome c556 [Energ  34.3      29 0.00063   24.0   1.6   60    1-61      2-64  (147)
 37 PRK10053 hypothetical protein;  33.9      60  0.0013   22.3   3.1   11    1-11      1-11  (130)
 38 PF13158 DUF3993:  Protein of u  33.8      96  0.0021   21.0   4.0   25   21-45     20-45  (122)
 39 PF15621 PROL5-SMR:  Proline-ri  33.1      29 0.00063   23.2   1.4   18    1-19      1-18  (113)
 40 PF14208 DUF4320:  Domain of un  32.1      65  0.0014   21.6   3.0   24   32-55     44-68  (116)
 41 PRK14762 membrane protein; Pro  30.2      72  0.0016   15.2   2.1   17    1-18      1-17  (27)
 42 PRK15300 fimbrial protein StiA  30.0      36 0.00077   24.3   1.6   10    1-10      1-10  (179)
 43 TIGR02743 TraW type-F conjugat  30.0 1.4E+02  0.0031   22.1   4.8   20   47-66     44-63  (202)
 44 COG1318 Predicted transcriptio  29.6      45 0.00098   24.1   2.0   20   47-66     39-58  (182)
 45 PF03295 Pox_TAA1:  Poxvirus tr  28.1      66  0.0014   18.9   2.2   19   29-47     24-42  (63)
 46 PF04202 Mfp-3:  Foot protein 3  27.8      61  0.0013   19.4   2.0    6    6-11      4-9   (71)
 47 PF08194 DIM:  DIM protein;  In  25.6      70  0.0015   16.7   1.8    6    1-6       1-6   (36)
 48 PF05436 MF_alpha_N:  Mating fa  25.2      43 0.00092   21.3   1.1   11    1-11      1-11  (86)
 49 PRK11546 zraP zinc resistance   25.2 1.5E+02  0.0032   20.7   3.9   20   26-45     44-63  (143)
 50 PF08138 Sex_peptide:  Sex pept  24.5      25 0.00054   20.1   0.0   17    1-18      1-17  (56)
 51 COG3470 Tpd Uncharacterized pr  23.3      93   0.002   22.2   2.6   19    1-20      1-19  (179)
 52 PRK15396 murein lipoprotein; P  23.0 1.2E+02  0.0025   18.9   2.8   12   33-44     43-54  (78)
 53 PF10880 DUF2673:  Protein of u  22.9      84  0.0018   18.2   2.0   11    1-11      1-11  (65)
 54 PRK02710 plastocyanin; Provisi  22.8      74  0.0016   21.1   2.1   17  144-160    98-114 (119)
 55 PRK12750 cpxP periplasmic repr  22.2      94   0.002   22.3   2.6   11    1-11      1-11  (170)
 56 PRK02898 cobalt transport prot  22.0 1.6E+02  0.0036   19.2   3.4   11    1-11      2-12  (100)
 57 PRK09973 putative outer membra  21.0 1.4E+02  0.0031   18.8   2.9   22    1-23      1-22  (85)
 58 COG3495 Uncharacterized protei  20.2 1.1E+02  0.0024   21.4   2.4   25    1-26      1-25  (166)

No 1  
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00  E-value=1.2e-41  Score=236.60  Aligned_cols=133  Identities=68%  Similarity=1.260  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhcccCCccccCCCCccceEEeecCC-CCHHHHHHHHHhccccCCCC
Q 048073           32 QDYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGGPYGENLAKGSGT-FTGTAAVSLWVAEKANYNYS  110 (164)
Q Consensus        32 ~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~g~n~~~~~~~-~~~~~~v~~W~~e~~~~~~~  110 (164)
                      +.||+.||.+|+.++|++|+||++|++.|+.+|++|++.|...|+.+.+|||+++..+. ..+.++|+.|++|...|++.
T Consensus         2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~~   81 (136)
T cd05381           2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNGPYGENLFWGSGGNWSAADAVASWVSEKKYYDYD   81 (136)
T ss_pred             hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCCCCCceEEEecCCCCCHHHHHHHHHhccccCCCC
Confidence            68999999999999999999999999999999999999999988877799999977643 57889999999999999998


Q ss_pred             CCCCCCCcccchHHHHHHHhcCeeeEEEEEeCC-CCEEEEEEecCCCCCCCCCCC
Q 048073          111 TNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSN-GWWFVTCSYDPPGNYIGQKPY  164 (164)
Q Consensus       111 ~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~-~~~~~vC~Y~p~gn~~g~~~Y  164 (164)
                      .+.+..+..++||+||||+++++||||++.|.+ ++.++||+|+|+||+.|++||
T Consensus        82 ~~~~~~~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~~vvC~Y~p~gn~~g~~~Y  136 (136)
T cd05381          82 SNTCAAGKMCGHYTQVVWRNTTRVGCARVTCDNGGGVFIICNYDPPGNYIGQRPY  136 (136)
T ss_pred             CCCcCCCccchHHHHHHHHhcCEeceEEEEeCCCCcEEEEEEeeCCCCCCCCCCC
Confidence            887777778999999999999999999999987 458999999999999999998


No 2  
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=100.00  E-value=1.9e-37  Score=213.70  Aligned_cols=128  Identities=48%  Similarity=0.902  Sum_probs=113.7

Q ss_pred             CchHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhcccCCccccCCCCccceEEeecCCCCHHHHHHHHHhccccCC
Q 048073           29 NSPQDYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGGPYGENLAKGSGTFTGTAAVSLWVAEKANYN  108 (164)
Q Consensus        29 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~~~g~n~~~~~~~~~~~~~v~~W~~e~~~~~  108 (164)
                      +.++.||+.||.+|+.++|++|+||++|+..|+.||++|+..|...|+.+.+|||++...  .+++++|+.|++|...|+
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~~~geNi~~~~--~~~~~~v~~W~~e~~~y~   78 (129)
T cd05384           1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGGPYGENLAAGY--PSGTSAVDAWYDEIEDYD   78 (129)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCCCCCcEEEEec--CCHHHHHHHHHhhhhhCC
Confidence            468999999999999999999999999999999999987777778888888999998765  368899999999999999


Q ss_pred             CCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCC-CEEEEEEecCCCCCCC
Q 048073          109 YSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNG-WWFVTCSYDPPGNYIG  160 (164)
Q Consensus       109 ~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~-~~~~vC~Y~p~gn~~g  160 (164)
                      ++.+..  +..++||+||||+++++||||++.|... ..++||+|+|+||+.|
T Consensus        79 ~~~~~~--~~~~~h~tqmvw~~t~~vGCa~~~c~~~~~~~~vC~Y~p~Gn~~g  129 (129)
T cd05384          79 YSNPGF--SEATGHFTQLVWKSTTQVGCAYKDCGGAWGWYIVCEYDPAGNVIG  129 (129)
T ss_pred             CCCCCC--CCcccchhhhhhhccceeeeEEEEeCCCCeEEEEEEEECCCCCCc
Confidence            876433  3458999999999999999999999873 5889999999999875


No 3  
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=100.00  E-value=6.4e-37  Score=211.61  Aligned_cols=128  Identities=34%  Similarity=0.579  Sum_probs=113.8

Q ss_pred             CchHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhcccCCccccCCC-CccceEEeecC---CCCHHHHHHHHHhcc
Q 048073           29 NSPQDYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG-PYGENLAKGSG---TFTGTAAVSLWVAEK  104 (164)
Q Consensus        29 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~g~n~~~~~~---~~~~~~~v~~W~~e~  104 (164)
                      ++++.||+.||.+|+.++|++|+||++|+..|+.||++|+..+.+.|+.+ .+|||++...+   +..++++|+.|++|.
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~   80 (132)
T cd05382           1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI   80 (132)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999998887777788765 59999998763   568899999999999


Q ss_pred             ccCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCCCEEEEEEecCCCCC
Q 048073          105 ANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWWFVTCSYDPPGNY  158 (164)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~vC~Y~p~gn~  158 (164)
                      ..|++.....  +..++||+||||+++++||||++.|..+.+++||+|+|+||+
T Consensus        81 ~~y~~~~~~~--~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~~~vC~Y~p~Gn~  132 (132)
T cd05382          81 KKYDFNKPGF--SSKTGHFTQVVWKSSTELGVGVAKSKKGCVYVVARYRPAGNV  132 (132)
T ss_pred             ccCCCCCCCC--CCCCCCeEEeEecCCCceeeEEEEcCCCCEEEEEEEeCCCCC
Confidence            9999874432  345899999999999999999999997778999999999985


No 4  
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=100.00  E-value=1.3e-34  Score=201.78  Aligned_cols=122  Identities=34%  Similarity=0.668  Sum_probs=107.9

Q ss_pred             chHHHHHHHHHHHhhCC-----CCCCCccHHHHHHHHHHHhhcccCCccccCCC--------CccceEEeecCCCCHHHH
Q 048073           30 SPQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG--------PYGENLAKGSGTFTGTAA   96 (164)
Q Consensus        30 ~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~--------~~g~n~~~~~~~~~~~~~   96 (164)
                      .++.||+.||.+|+.+.     |.+|+||++||..|+.||+    .|...|++.        .+|||++.......++++
T Consensus         2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~a   77 (138)
T cd05383           2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSSYPRSWSDV   77 (138)
T ss_pred             HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccCCCCCHHHH
Confidence            47899999999999983     8899999999999999999    588777642        479999987766688999


Q ss_pred             HHHHHhccccCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCC--CEEEEEEecCC
Q 048073           97 VSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNG--WWFVTCSYDPP  155 (164)
Q Consensus        97 v~~W~~e~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~--~~~~vC~Y~p~  155 (164)
                      |+.|++|...|+++...+..+..++|||||||+++++||||++.|..+  ++++||+|+|+
T Consensus        78 v~~W~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~  138 (138)
T cd05383          78 IQAWYDEYKDFKYGVGATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA  138 (138)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence            999999999999988766667789999999999999999999999874  58899999994


No 5  
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant  pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=100.00  E-value=2.2e-34  Score=201.66  Aligned_cols=122  Identities=45%  Similarity=0.794  Sum_probs=108.9

Q ss_pred             chHHHHHHHHHHHhhCC-----------CCCCCccHHHHHHHHHHHhhcccCCccccCCC-CccceEEeecC-----CCC
Q 048073           30 SPQDYLDAHNSARAAVY-----------VPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG-PYGENLAKGSG-----TFT   92 (164)
Q Consensus        30 ~~~~il~~hN~~R~~~~-----------m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~g~n~~~~~~-----~~~   92 (164)
                      .|+.||+.||.+|+.++           |++|+||++||..|+.+|+    .|...|+.. .+|||++...+     ...
T Consensus         2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~   77 (144)
T smart00198        2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITY   77 (144)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchh
Confidence            58899999999999999           9999999999999999999    598888764 79999987653     357


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCC-CcccchHHHHHHHhcCeeeEEEEEeCCCC---EEEEEEecCC
Q 048073           93 GTAAVSLWVAEKANYNYSTNTCAA-GKVCGHYTQVVWRNSIRVGCARVQCSNGW---WFVTCSYDPP  155 (164)
Q Consensus        93 ~~~~v~~W~~e~~~~~~~~~~~~~-~~~~~~f~q~iw~~~~~vGCa~~~c~~~~---~~~vC~Y~p~  155 (164)
                      +.++|+.|++|...|++....+.. +..++||+||||+++++||||++.|.++.   .++||+|+|+
T Consensus        78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~  144 (144)
T smart00198       78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP  144 (144)
T ss_pred             HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence            789999999999999998877665 56799999999999999999999999764   6899999994


No 6  
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00  E-value=5.3e-34  Score=200.03  Aligned_cols=121  Identities=36%  Similarity=0.698  Sum_probs=104.0

Q ss_pred             CchHHHHHHHHHHHhhC-----CCCCCCccHHHHHHHHHHHhhcccCCccccCC------------CCccceEEeecC-C
Q 048073           29 NSPQDYLDAHNSARAAV-----YVPNIIWNDTVAAYAQNYSNSRIADCNLVHSG------------GPYGENLAKGSG-T   90 (164)
Q Consensus        29 ~~~~~il~~hN~~R~~~-----~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~------------~~~g~n~~~~~~-~   90 (164)
                      +++++||+.||++|+.+     .|++|+||++|+..||.||+    .|...|+.            ..+|||++.... .
T Consensus         1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~   76 (144)
T cd05385           1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI   76 (144)
T ss_pred             CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCC
Confidence            46899999999999999     59999999999999999999    58766543            258999987653 3


Q ss_pred             CCHHHHHHHHHhccccCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCCC-----EEEEEEecCC
Q 048073           91 FTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGW-----WFVTCSYDPP  155 (164)
Q Consensus        91 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~-----~~~vC~Y~p~  155 (164)
                      ..+.++++.|++|...|+|..+.+.  ..++||+||||+++++||||++.|++++     .++||+|+|+
T Consensus        77 ~~~~~av~~W~~e~~~y~~~~~~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~  144 (144)
T cd05385          77 FSPKNAVTSWYNEGKFYDFDTNSCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA  144 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence            5789999999999999998876554  3599999999999999999999998742     6899999994


No 7  
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as 
Probab=100.00  E-value=1.4e-32  Score=187.57  Aligned_cols=117  Identities=43%  Similarity=0.752  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHhhC-CCCCCCccHHHHHHHHHHHhhcccCCccccCCC----CccceEEeecCCCCHHHHHHHHHhccc
Q 048073           31 PQDYLDAHNSARAAV-YVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG----PYGENLAKGSGTFTGTAAVSLWVAEKA  105 (164)
Q Consensus        31 ~~~il~~hN~~R~~~-~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~----~~g~n~~~~~~~~~~~~~v~~W~~e~~  105 (164)
                      +++||+.||.+|+.+ +|++|+||++|+..|+.+|+    .|...|++.    .+|||++...+..+++++++.|++|..
T Consensus         1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~~~~~~~v~~W~~e~~   76 (122)
T cd00168           1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYDMTGPAAVQAWYNEIK   76 (122)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            368999999999999 99999999999999999999    588877663    589999988755689999999999999


Q ss_pred             cCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCCCEEEEEEec
Q 048073          106 NYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWWFVTCSYD  153 (164)
Q Consensus       106 ~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~vC~Y~  153 (164)
                      .|+|....  .+..++||+||||+++++||||++.|++++.++||+|+
T Consensus        77 ~y~~~~~~--~~~~~~h~~qmvw~~s~~vGca~~~~~~~~~~~vC~Y~  122 (122)
T cd00168          77 NYNFGQPG--FSSGTGHYTQVVWKNTTKIGCGVAFCGSNSYYVVCNYG  122 (122)
T ss_pred             hCCCCCCC--CCCCccchhhhhcccCCeeeeEEEEcCCCCEEEEEeCc
Confidence            99988543  34558999999999999999999999977799999995


No 8  
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00  E-value=9.9e-33  Score=191.86  Aligned_cols=119  Identities=40%  Similarity=0.785  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHhhCC-----CCCCCccHHHHHHHHHHHhhcccCCccccCCC----CccceEEeecC-CCCHHHHHHHH
Q 048073           31 PQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG----PYGENLAKGSG-TFTGTAAVSLW  100 (164)
Q Consensus        31 ~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~----~~g~n~~~~~~-~~~~~~~v~~W  100 (164)
                      |+.||+.||.+|+.++     |.+|+||++||..|+.||+    +|...|++.    .+|||++...+ ...+.++++.|
T Consensus         1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W   76 (136)
T cd05559           1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW   76 (136)
T ss_pred             CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence            5789999999999984     8899999999999999999    588877652    69999987764 35789999999


Q ss_pred             HhccccCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCC-------CEEEEEEec
Q 048073          101 VAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNG-------WWFVTCSYD  153 (164)
Q Consensus       101 ~~e~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~-------~~~~vC~Y~  153 (164)
                      ++|...|+++.+.+..+..++||+||||+++++||||++.|.++       ..++||+|+
T Consensus        77 ~~e~~~y~~~~~~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~  136 (136)
T cd05559          77 NNEKLDYNYNTNTCAPNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG  136 (136)
T ss_pred             HHHHHhcCCCCCCCCCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence            99999999988877777789999999999999999999999752       378999995


No 9  
>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]
Probab=100.00  E-value=4.2e-33  Score=208.64  Aligned_cols=132  Identities=48%  Similarity=0.898  Sum_probs=115.4

Q ss_pred             CchHHHHHHHHHHHhhCC-----CCCCCccHHHHHHHHHHHhhcccCCccccC------CCCccceEEeecCC-------
Q 048073           29 NSPQDYLDAHNSARAAVY-----VPNIIWNDTVAAYAQNYSNSRIADCNLVHS------GGPYGENLAKGSGT-------   90 (164)
Q Consensus        29 ~~~~~il~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~------~~~~g~n~~~~~~~-------   90 (164)
                      +.+++|++.||.+|..+.     |++|+||++||..||.||++    |...|+      .+.+|||++++.+.       
T Consensus        40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~~----c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~  115 (225)
T KOG3017|consen   40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWANT----CPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD  115 (225)
T ss_pred             HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHhh----CCcccCccccccCCCCcccceeeccCCCCcccc
Confidence            688999999999999998     99999999999999999995    776655      35679999987753       


Q ss_pred             CCHHHHHHHHHhccccCCCCCCCCCC---CcccchHHHHHHHhcCeeeEEEEEeCCC-----CEEEEEEecCCCCCCC-C
Q 048073           91 FTGTAAVSLWVAEKANYNYSTNTCAA---GKVCGHYTQVVWRNSIRVGCARVQCSNG-----WWFVTCSYDPPGNYIG-Q  161 (164)
Q Consensus        91 ~~~~~~v~~W~~e~~~~~~~~~~~~~---~~~~~~f~q~iw~~~~~vGCa~~~c~~~-----~~~~vC~Y~p~gn~~g-~  161 (164)
                      .....+++.|+.|...|++..+.+..   ++.++|||||||+++++||||++.|.++     ..++||+|+|+||+.+ +
T Consensus       116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~  195 (225)
T KOG3017|consen  116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE  195 (225)
T ss_pred             ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence            46678999999999999999988876   7789999999999999999999999987     5799999999955555 5


Q ss_pred             CCC
Q 048073          162 KPY  164 (164)
Q Consensus       162 ~~Y  164 (164)
                      .+|
T Consensus       196 ~~y  198 (225)
T KOG3017|consen  196 IPY  198 (225)
T ss_pred             CcC
Confidence            665


No 10 
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.97  E-value=1.6e-31  Score=186.55  Aligned_cols=119  Identities=39%  Similarity=0.706  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHhhC------------CCCCCCccHHHHHHHHHHHhhcccCCccccCCC----CccceEEeecCC----
Q 048073           31 PQDYLDAHNSARAAV------------YVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG----PYGENLAKGSGT----   90 (164)
Q Consensus        31 ~~~il~~hN~~R~~~------------~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~----~~g~n~~~~~~~----   90 (164)
                      ++.||+.||.+|+.+            +|++|+||++||..|+.+|+    .|...|+..    .+|||++.....    
T Consensus         1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~   76 (144)
T cd05380           1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTV   76 (144)
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence            478999999999999            79999999999999999999    587777653    689999987643    


Q ss_pred             -CCHHHHHHHHHhccccCCCCCC-CCCCCcccchHHHHHHHhcCeeeEEEEEeCC---CCEEEEEEec
Q 048073           91 -FTGTAAVSLWVAEKANYNYSTN-TCAAGKVCGHYTQVVWRNSIRVGCARVQCSN---GWWFVTCSYD  153 (164)
Q Consensus        91 -~~~~~~v~~W~~e~~~~~~~~~-~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~---~~~~~vC~Y~  153 (164)
                       ..+.++|+.|++|...|++... ....+..++||+||||+++++||||++.|..   .+.++||+|+
T Consensus        77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~  144 (144)
T cd05380          77 EELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS  144 (144)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCcccccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence             3678999999999999998875 3455677999999999999999999999985   3599999995


No 11 
>PF00188 CAP:  Cysteine-rich secretory protein family;  InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors.  This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.87  E-value=8.5e-22  Score=131.71  Aligned_cols=114  Identities=34%  Similarity=0.573  Sum_probs=83.1

Q ss_pred             HHHHHHHH-hhCCCCCCCccHHHHHHHHHHHhhcccCCccccCC-CCccceEEeecCCCCHHHH----HHHHHhccccCC
Q 048073           35 LDAHNSAR-AAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSG-GPYGENLAKGSGTFTGTAA----VSLWVAEKANYN  108 (164)
Q Consensus        35 l~~hN~~R-~~~~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~-~~~g~n~~~~~~~~~~~~~----v~~W~~e~~~~~  108 (164)
                      |+.||.+| ...++++|+||++|+..|+.+|+.    |...+.. ...|++.............    ++.|+.+...+.
T Consensus         1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (124)
T PF00188_consen    1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKY----CANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN   76 (124)
T ss_dssp             HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTT----TCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred             CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHH----hhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence            78999999 888888899999999999999995    6553322 2457777766643333222    899999999887


Q ss_pred             CCC--CCCCCCcccchHHHHHHHhcCeeeEEEEEeCCCC--EEEEEEe
Q 048073          109 YST--NTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGW--WFVTCSY  152 (164)
Q Consensus       109 ~~~--~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~--~~~vC~Y  152 (164)
                      ...  ....-....+||+||+|+.+++||||++.|..++  .++||.|
T Consensus        77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y  124 (124)
T PF00188_consen   77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY  124 (124)
T ss_dssp             TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred             cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence            662  1122234589999999999999999999999876  9999998


No 12 
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=99.80  E-value=7.5e-19  Score=120.68  Aligned_cols=107  Identities=20%  Similarity=0.223  Sum_probs=92.1

Q ss_pred             CchHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhcccCCccccCCC-----------------CccceEEeecCCC
Q 048073           29 NSPQDYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG-----------------PYGENLAKGSGTF   91 (164)
Q Consensus        29 ~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-----------------~~g~n~~~~~~~~   91 (164)
                      +.++++++.||.+|..++++||+||+.|++.|+.||+.|+..+.+.|..+                 .+|||++.+.  .
T Consensus         3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~--~   80 (127)
T TIGR02909         3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN--S   80 (127)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC--C
Confidence            35789999999999999999999999999999999999998888877641                 3489998654  4


Q ss_pred             CHHHHHHHHHhccccCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCCCEEEEEEec
Q 048073           92 TGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWWFVTCSYD  153 (164)
Q Consensus        92 ~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~vC~Y~  153 (164)
                      +++.+++.|+++.                +|+++|+|++.+.+|||++.+.+++.|+|-.|.
T Consensus        81 ~~~~~v~~W~~S~----------------gH~~nil~~~~~~~Gvg~~~~~~g~~y~~q~F~  126 (127)
T TIGR02909        81 TVEAVHNAWMNSP----------------GHRANILNPNYTEIGVGYVEGGSGGIYWTQMFI  126 (127)
T ss_pred             CHHHHHHHHHcCH----------------hHHHHHcCCCcCeEeEEEEeCCCCCeEEEEEec
Confidence            6889999998753                699999999999999999999887777776653


No 13 
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=99.65  E-value=1.6e-15  Score=102.54  Aligned_cols=103  Identities=28%  Similarity=0.413  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhcccCCccccCCC-C----------------ccceEEeecCCCCHH
Q 048073           32 QDYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG-P----------------YGENLAKGSGTFTGT   94 (164)
Q Consensus        32 ~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~----------------~g~n~~~~~~~~~~~   94 (164)
                      +.+++.+|.+|..++++||+||.+|+..|+.++..++......|... .                +|||++....  ...
T Consensus         2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~~--~~~   79 (122)
T cd05379           2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYS--TAE   79 (122)
T ss_pred             hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccCC--CHH
Confidence            57899999999999999999999999999999999987666666541 1                3888876652  689


Q ss_pred             HHHHHHHhccccCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCCCCEEEEEEe
Q 048073           95 AAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSNGWWFVTCSY  152 (164)
Q Consensus        95 ~~v~~W~~e~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~~~~~~vC~Y  152 (164)
                      ++++.|+++                .+|+.+|+++..+++|||+....++..++|..|
T Consensus        80 ~~~~~w~~~----------------~~H~~~ll~~~~~~~Gvg~~~~~~~~~y~~~~f  121 (122)
T cd05379          80 AAVDGWMNS----------------PGHRANILNPDYTEVGVGVAYGGDGGYYWVQVF  121 (122)
T ss_pred             HHHHHHhCC----------------HhHHHHHcCCCcceeeEEEEeCCCCCeEEEEec
Confidence            999999876                369999999999999999999987767777665


No 14 
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=99.19  E-value=9.8e-11  Score=86.74  Aligned_cols=100  Identities=24%  Similarity=0.324  Sum_probs=85.3

Q ss_pred             CCCchHHHHHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhcccCCccccCCC-----------------CccceEEeecC
Q 048073           27 AQNSPQDYLDAHNSARAAVYVPNIIWNDTVAAYAQNYSNSRIADCNLVHSGG-----------------PYGENLAKGSG   89 (164)
Q Consensus        27 ~~~~~~~il~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-----------------~~g~n~~~~~~   89 (164)
                      .+++...+++.+|.+|..+++++|+||.+|+..|+.++..|+++..+.|..+                 .+|||++.+..
T Consensus        77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~  156 (207)
T COG2340          77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN  156 (207)
T ss_pred             cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence            4577888999999999999999999999999999999999999888887651                 36999988763


Q ss_pred             CCCHHHHHHHHHhccccCCCCCCCCCCCcccchHHHHHHHhcCeeeEEEEEeCC
Q 048073           90 TFTGTAAVSLWVAEKANYNYSTNTCAAGKVCGHYTQVVWRNSIRVGCARVQCSN  143 (164)
Q Consensus        90 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~f~q~iw~~~~~vGCa~~~c~~  143 (164)
                      +. .+.+|+.|++..                +|-.+|+.+.-+.+|.|+..-..
T Consensus       157 ~~-~~~~v~~Wl~S~----------------gH~~nll~~~~~~~Gv~~~~~~~  193 (207)
T COG2340         157 DP-PEAAVDGWLNSP----------------GHRKNLLNPAYTEIGVGVAYDAS  193 (207)
T ss_pred             Cc-hHHHHHHhcCCh----------------hhhhhccCcchhheeEEEEecCC
Confidence            22 279999998776                68899999999999999987654


No 15 
>PF11054 Surface_antigen:  Sporozoite TA4 surface antigen;  InterPro: IPR021288  This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide []. 
Probab=76.02  E-value=33  Score=26.20  Aligned_cols=130  Identities=18%  Similarity=0.219  Sum_probs=77.1

Q ss_pred             chHHHHHHHHHHHhhCCCCCC-----------Cc-cHHHHHHHHHHHhhcccCCccccCC--------CC----ccceEE
Q 048073           30 SPQDYLDAHNSARAAVYVPNI-----------IW-NDTVAAYAQNYSNSRIADCNLVHSG--------GP----YGENLA   85 (164)
Q Consensus        30 ~~~~il~~hN~~R~~~~m~~L-----------~W-d~~La~~A~~~a~~~~~~c~~~~~~--------~~----~g~n~~   85 (164)
                      ..-++|+..|..|...|++..           .. +++| .....|.+-    |....+.        ..    -.-.++
T Consensus        34 ~~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~i----C~~l~pt~~~~~~~~~~~~pf~~GTyA  108 (254)
T PF11054_consen   34 TSVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKKI----CEHLIPTQAEPAAEASKLNPFKDGTYA  108 (254)
T ss_pred             cchhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHHH----HHHhcCCCCcchhhccccCcCCCCceE
Confidence            356899999999999985432           12 3344 455567763    6533221        01    112333


Q ss_pred             eec---CCCCHHHHHHHHHhccccCCCCC------CCCCCCcccchHHHHHHHhcCe-eeEEEEEeCCC-----------
Q 048073           86 KGS---GTFTGTAAVSLWVAEKANYNYST------NTCAAGKVCGHYTQVVWRNSIR-VGCARVQCSNG-----------  144 (164)
Q Consensus        86 ~~~---~~~~~~~~v~~W~~e~~~~~~~~------~~~~~~~~~~~f~q~iw~~~~~-vGCa~~~c~~~-----------  144 (164)
                      ...   +.++..++|+.|-...++++--.      +..+.+...-.|.-+.+++.+. .-|.+..|...           
T Consensus       109 f~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~  188 (254)
T PF11054_consen  109 FKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQ  188 (254)
T ss_pred             eeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCccccc
Confidence            333   45789999999988777763211      1112222233455566655555 57999999751           


Q ss_pred             ---------CEEEEEEecCCCC-CCCCCCC
Q 048073          145 ---------WWFVTCSYDPPGN-YIGQKPY  164 (164)
Q Consensus       145 ---------~~~~vC~Y~p~gn-~~g~~~Y  164 (164)
                               ++-++|.-.|..- ..|+.|+
T Consensus       189 ~d~~~~~~~gyAliCkT~P~Al~~~~saPF  218 (254)
T PF11054_consen  189 GDSDSESKTGYALICKTMPAALASDGSAPF  218 (254)
T ss_pred             CCCcccccceEEEEEecCchhhcCCCCCCC
Confidence                     2778999999654 4565553


No 16 
>PRK09458 pspB phage shock protein B; Provisional
Probab=69.45  E-value=12  Score=23.06  Aligned_cols=17  Identities=18%  Similarity=0.143  Sum_probs=7.6

Q ss_pred             CCCCchHHHHHHHHHHH
Q 048073           26 HAQNSPQDYLDAHNSAR   42 (164)
Q Consensus        26 ~~~~~~~~il~~hN~~R   42 (164)
                      .++++++.+-+..+..+
T Consensus        36 Ls~~d~~~L~~L~~~A~   52 (75)
T PRK09458         36 LSQEEQQRLAQLTEKAE   52 (75)
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            44444444444444433


No 17 
>PF11714 Inhibitor_I53:  Thrombin inhibitor Madanin  ;  InterPro: IPR021716  Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva []. 
Probab=58.40  E-value=11  Score=22.78  Aligned_cols=18  Identities=17%  Similarity=0.073  Sum_probs=10.5

Q ss_pred             CcchhhHHHHHHHHHHHHH
Q 048073            1 MKMSSISLALAICFMGSLA   19 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~   19 (164)
                      ||.|.+++++. .+-++.+
T Consensus         1 MKhFaiLilav-VaSAvVM   18 (78)
T PF11714_consen    1 MKHFAILILAV-VASAVVM   18 (78)
T ss_pred             CchHHHHHHHH-HHHHHHH
Confidence            88887755555 3344333


No 18 
>COG3026 RseB Negative regulator of sigma E activity [Signal transduction mechanisms]
Probab=52.66  E-value=28  Score=27.31  Aligned_cols=42  Identities=31%  Similarity=0.387  Sum_probs=24.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhCC
Q 048073            1 MKMSSISLALAICFMGSLALLIQTSHAQNSPQDYLDAHNSARAAVY   46 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~   46 (164)
                      ||+....+.|+   ++.++ .+++..+++..-.+|...|..+.+.+
T Consensus         1 mk~l~~s~~ll---~~sl~-~s~~a~ae~~s~~~L~km~~A~~~ln   42 (320)
T COG3026           1 MKQLWFSLLLL---LGSLL-LSAAASAESASAAWLQKMNEASQSLN   42 (320)
T ss_pred             CchHHHHHHHH---HHHHh-hhhhhhccCccHHHHHHHHHHHHhcC
Confidence            78865544444   22222 22333333333389999999998885


No 19 
>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional
Probab=49.23  E-value=20  Score=29.08  Aligned_cols=44  Identities=16%  Similarity=0.022  Sum_probs=20.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhccC-CCCchHHHHHHHHHHHhhC
Q 048073            1 MKMSSISLALAICFMGSLALLIQTSH-AQNSPQDYLDAHNSARAAV   45 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~il~~hN~~R~~~   45 (164)
                      |||..++++.+ ++++.....+.+.. .++.++.+=+....++.+.
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vd~~i~~~~~~~   46 (384)
T PRK11289          2 MKMMLLLLLAA-LLLTASASAFAAAATPQQLKDIVDRTITPLMEEQ   46 (384)
T ss_pred             cchhhHHHHHH-HHHHhhhcccccccChHHHHHHHHHHHHHHHHhC
Confidence            78875544444 33333332333222 2345555555566665554


No 20 
>PF06667 PspB:  Phage shock protein B;  InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=49.00  E-value=46  Score=20.54  Aligned_cols=10  Identities=10%  Similarity=0.036  Sum_probs=3.8

Q ss_pred             CchHHHHHHH
Q 048073           29 NSPQDYLDAH   38 (164)
Q Consensus        29 ~~~~~il~~h   38 (164)
                      ++++.+-+.+
T Consensus        39 ~d~~~L~~L~   48 (75)
T PF06667_consen   39 EDEQRLQELY   48 (75)
T ss_pred             HHHHHHHHHH
Confidence            3333333333


No 21 
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=47.95  E-value=48  Score=20.41  Aligned_cols=11  Identities=18%  Similarity=0.350  Sum_probs=5.3

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      |-+..+.++++
T Consensus         1 m~~~fl~~Pli   11 (75)
T TIGR02976         1 MSIFFLAIPLI   11 (75)
T ss_pred             CchHHHHHHHH
Confidence            33444555555


No 22 
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.62  E-value=23  Score=21.77  Aligned_cols=11  Identities=36%  Similarity=0.184  Sum_probs=6.7

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      ||++.++++++
T Consensus         1 ~~~l~~~l~~~   11 (85)
T TIGR02209         1 EKKLYVLLLLA   11 (85)
T ss_pred             CchHHHHHHHH
Confidence            67776555554


No 23 
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=47.00  E-value=20  Score=31.77  Aligned_cols=44  Identities=14%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             ccCCCCchHHHHHHHHHHHhhCC----------------------CCCCCccHHHHHHHHHHHhhc
Q 048073           24 TSHAQNSPQDYLDAHNSARAAVY----------------------VPNIIWNDTVAAYAQNYSNSR   67 (164)
Q Consensus        24 ~~~~~~~~~~il~~hN~~R~~~~----------------------m~~L~Wd~~La~~A~~~a~~~   67 (164)
                      ++....+|+++++..|.-+...-                      |-.|-|+..|++.|+....++
T Consensus       778 Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~  843 (901)
T KOG4439|consen  778 GQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM  843 (901)
T ss_pred             CccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence            34445789999999999888441                      778999999999999988853


No 24 
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=45.46  E-value=33  Score=21.94  Aligned_cols=46  Identities=11%  Similarity=0.039  Sum_probs=27.9

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhCC
Q 048073            1 MKMSSISLALAICFMGSLALLIQTSHAQNSPQDYLDAHNSARAAVY   46 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~   46 (164)
                      |+|+.+.+.=+++++.+...+++..--++..+.+=.....+|+...
T Consensus         1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~   46 (90)
T PRK14857          1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASK   46 (90)
T ss_pred             CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            7788654433322333334456666666777777778888887654


No 25 
>PF11471 Sugarporin_N:  Maltoporin periplasmic N-terminal extension;  InterPro: IPR021570  This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins. 
Probab=45.33  E-value=35  Score=20.00  Aligned_cols=11  Identities=45%  Similarity=0.748  Sum_probs=6.6

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      ||+..+.++++
T Consensus         1 M~~k~~~la~~   11 (60)
T PF11471_consen    1 MKIKKLALAVA   11 (60)
T ss_pred             CcccHHHHHHH
Confidence            77665555555


No 26 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red;  InterPro: IPR020999  RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. 
Probab=44.00  E-value=48  Score=22.40  Aligned_cols=23  Identities=22%  Similarity=0.102  Sum_probs=15.2

Q ss_pred             HHHHHHHHhhCCCCCCCccHHHH
Q 048073           35 LDAHNSARAAVYVPNIIWNDTVA   57 (164)
Q Consensus        35 l~~hN~~R~~~~m~~L~Wd~~La   57 (164)
                      .-.||+-|+.-++.++.-..-|+
T Consensus        19 ~~~~~rRR~r~G~~P~~gt~w~~   41 (130)
T PF12273_consen   19 FYCHNRRRRRRGLQPIYGTRWMA   41 (130)
T ss_pred             HHHHHHHHhhcCCCCcCCceecC
Confidence            34688888888877776443333


No 27 
>PF03032 Brevenin:  Brevenin/esculentin/gaegurin/rugosin family;  InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=43.65  E-value=13  Score=20.60  Aligned_cols=6  Identities=33%  Similarity=1.104  Sum_probs=2.7

Q ss_pred             HHHHHH
Q 048073           13 CFMGSL   18 (164)
Q Consensus        13 ~~~~~~   18 (164)
                      +|++++
T Consensus        11 fflG~I   16 (46)
T PF03032_consen   11 FFLGTI   16 (46)
T ss_pred             HHHHHc
Confidence            455533


No 28 
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=43.35  E-value=17  Score=28.63  Aligned_cols=34  Identities=26%  Similarity=0.723  Sum_probs=20.5

Q ss_pred             HHHHHHhcCeeeEEEEEeCCCCEEEEEEecCCCCC
Q 048073          124 TQVVWRNSIRVGCARVQCSNGWWFVTCSYDPPGNY  158 (164)
Q Consensus       124 ~q~iw~~~~~vGCa~~~c~~~~~~~vC~Y~p~gn~  158 (164)
                      .-+||+..+.-=-..-.=+. ..++.|.|+|.||.
T Consensus        78 klIvWDs~TtnK~haipl~s-~WVMtCA~sPSg~~  111 (343)
T KOG0286|consen   78 KLIVWDSFTTNKVHAIPLPS-SWVMTCAYSPSGNF  111 (343)
T ss_pred             eEEEEEcccccceeEEecCc-eeEEEEEECCCCCe
Confidence            35677766654333322222 38889999998774


No 29 
>PF04648 MF_alpha:  Yeast mating factor alpha hormone;  InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=43.13  E-value=13  Score=14.77  Aligned_cols=6  Identities=50%  Similarity=0.639  Sum_probs=3.8

Q ss_pred             CCCCCC
Q 048073          159 IGQKPY  164 (164)
Q Consensus       159 ~g~~~Y  164 (164)
                      .|||+|
T Consensus         8 ~GqP~Y   13 (13)
T PF04648_consen    8 PGQPMY   13 (13)
T ss_pred             CCCcCC
Confidence            367766


No 30 
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=43.10  E-value=32  Score=23.72  Aligned_cols=29  Identities=21%  Similarity=0.140  Sum_probs=24.2

Q ss_pred             ccCCCCchHHHHHHHHHHHhhCCCCCCCc
Q 048073           24 TSHAQNSPQDYLDAHNSARAAVYVPNIIW   52 (164)
Q Consensus        24 ~~~~~~~~~~il~~hN~~R~~~~m~~L~W   52 (164)
                      ..++-+..++-+...+.+|..++|++=.=
T Consensus        31 ~~Ltg~Y~~DT~~Vi~tlr~~i~lpkd~p   59 (135)
T TIGR03044        31 TRLTGDYVEDTLAVIQTLREAIDLPDDDP   59 (135)
T ss_pred             ccccchHHHHHHHHHHHHHHHHcCCCCCc
Confidence            45677899999999999999999976443


No 31 
>PRK10780 periplasmic chaperone; Provisional
Probab=42.30  E-value=46  Score=23.54  Aligned_cols=43  Identities=12%  Similarity=-0.025  Sum_probs=19.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHH-hhccCCCCchHHHHHHHHHHHhh
Q 048073            1 MKMSSISLALAICFMGSLALL-IQTSHAQNSPQDYLDAHNSARAA   44 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~il~~hN~~R~~   44 (164)
                      ||.+.+.+.|. +++.++... .+....--+-+.|+..+......
T Consensus         1 Mkk~~~~~~l~-l~~~~~~~a~a~~KIg~Vd~q~il~~~p~~k~~   44 (165)
T PRK10780          1 MKKWLLAAGLG-LALATSAGAQAADKIAIVNMGSIFQQVPQRTGV   44 (165)
T ss_pred             ChHHHHHHHHH-HHHHHHHHHHHhcCeEEeeHHHHHHHCHHHHHH
Confidence            77765444443 223222211 22222223556677777765544


No 32 
>PF11912 DUF3430:  Protein of unknown function (DUF3430);  InterPro: IPR021837  This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length. 
Probab=42.15  E-value=20  Score=26.16  Aligned_cols=11  Identities=27%  Similarity=0.223  Sum_probs=6.1

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      ||++.++++|+
T Consensus         1 MKll~~lilli   11 (212)
T PF11912_consen    1 MKLLISLILLI   11 (212)
T ss_pred             CcHHHHHHHHH
Confidence            88854444443


No 33 
>PF04863 EGF_alliinase:  Alliinase EGF-like domain;  InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=42.07  E-value=29  Score=20.04  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=15.9

Q ss_pred             CCccHHHHHHHHHHHhhcccCCcc
Q 048073           50 IIWNDTVAAYAQNYSNSRIADCNL   73 (164)
Q Consensus        50 L~Wd~~La~~A~~~a~~~~~~c~~   73 (164)
                      |+|...-++.|+..|.-   .|+-
T Consensus         1 l~Wt~~Aa~eAeavAai---~CSG   21 (56)
T PF04863_consen    1 LSWTLRAAEEAEAVAAI---SCSG   21 (56)
T ss_dssp             -STTHHHHHHHHHHHTS-----TT
T ss_pred             CchHHHHHHHHHHhhcC---CcCC
Confidence            68999999999999985   6653


No 34 
>PRK10598 lipoprotein; Provisional
Probab=41.43  E-value=24  Score=25.82  Aligned_cols=25  Identities=20%  Similarity=0.373  Sum_probs=20.4

Q ss_pred             ccCCCCchHHHHHHHHHHHhhCCCC
Q 048073           24 TSHAQNSPQDYLDAHNSARAAVYVP   48 (164)
Q Consensus        24 ~~~~~~~~~~il~~hN~~R~~~~m~   48 (164)
                      -+.++.+.++.|..|+.+=.+.+.+
T Consensus        25 ysISE~Ein~yL~k~~~~~k~~G~~   49 (186)
T PRK10598         25 YTISEQEINQYLAKHNNFEKQIGLP   49 (186)
T ss_pred             eeecHHHHHHHHHHhccHHHhcCCC
Confidence            4566778899999999999999844


No 35 
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=34.28  E-value=51  Score=22.86  Aligned_cols=54  Identities=7%  Similarity=0.133  Sum_probs=33.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhC---CCCCCCccH
Q 048073            1 MKMSSISLALAICFMGSLALLIQTSHAQNSPQDYLDAHNSARAAV---YVPNIIWND   54 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~---~m~~L~Wd~   54 (164)
                      |.....+++.+++++++....+.+......-++|++..|.+=.+-   -|..++||.
T Consensus         1 MgLt~qli~aL~CLl~~ts~~~~g~~~~~~LkEIIk~Ln~lT~~~~~~C~e~~V~dV   57 (138)
T smart00190        1 MGLTPQLVPALLCLLGCTGNGPHGHSCDITLREIIETLNNVTQKGTNLCTEMMVPDV   57 (138)
T ss_pred             CCchHHHHHHHHHHHHhcCCCCCCccccchHHHHHHHHHHHccCCCCCcccccHHHH
Confidence            555543333332666655545555444446788999999886653   377788887


No 36 
>COG3909 Cytochrome c556 [Energy production and conversion]
Probab=34.27  E-value=29  Score=24.03  Aligned_cols=60  Identities=10%  Similarity=0.007  Sum_probs=28.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHhhCC---CCCCCccHHHHHHHH
Q 048073            1 MKMSSISLALAICFMGSLALLIQTSHAQNSPQDYLDAHNSARAAVY---VPNIIWNDTVAAYAQ   61 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~il~~hN~~R~~~~---m~~L~Wd~~La~~A~   61 (164)
                      ||+-.+.+.|+ +......+..+.+..+..|+.++...=.-=...+   -...-+|-|--..+-
T Consensus         2 mklkal~~~ll-~~~~~~~a~~a~p~~~~~RqalmKemg~~~g~l~~m~Kge~PfDae~vka~~   64 (147)
T COG3909           2 MKLKALAIALL-LGALGGSAVPADPEGEIKRQALMKEMGKTFGRLGKMAKGEKPFDAEKVKAAL   64 (147)
T ss_pred             ccHHHHHHHHH-HHHhcccccccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence            56555555555 3333333344444445457777665433222221   234446666544443


No 37 
>PRK10053 hypothetical protein; Provisional
Probab=33.86  E-value=60  Score=22.30  Aligned_cols=11  Identities=45%  Similarity=0.567  Sum_probs=6.2

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      ||...+.++++
T Consensus         1 MKK~~~~~~~~   11 (130)
T PRK10053          1 MKLQAIALASF   11 (130)
T ss_pred             CcHHHHHHHHH
Confidence            78764444444


No 38 
>PF13158 DUF3993:  Protein of unknown function (DUF3993)
Probab=33.77  E-value=96  Score=20.98  Aligned_cols=25  Identities=4%  Similarity=0.267  Sum_probs=13.7

Q ss_pred             HhhccCCCCchHHHHHH-HHHHHhhC
Q 048073           21 LIQTSHAQNSPQDYLDA-HNSARAAV   45 (164)
Q Consensus        21 ~~~~~~~~~~~~~il~~-hN~~R~~~   45 (164)
                      .++...+..+|++++.. .+.+-.++
T Consensus        20 ~~~~~~~~~~r~evf~~lQ~a~eaQ~   45 (122)
T PF13158_consen   20 FVGKEESKEDRKEVFETLQSAFEAQF   45 (122)
T ss_pred             HHhhhhccccHHHHHHHHHHHHHHHh
Confidence            33456666777777654 34444443


No 39 
>PF15621 PROL5-SMR:  Proline-rich submaxillary gland androgen-regulated family
Probab=33.09  E-value=29  Score=23.18  Aligned_cols=18  Identities=22%  Similarity=0.377  Sum_probs=13.4

Q ss_pred             CcchhhHHHHHHHHHHHHH
Q 048073            1 MKMSSISLALAICFMGSLA   19 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~   19 (164)
                      ||-+.+++-|+ ++++.++
T Consensus         1 MK~L~li~GLw-~Li~CF~   18 (113)
T PF15621_consen    1 MKSLYLIFGLW-ALIGCFT   18 (113)
T ss_pred             CcceehHHHHH-HHHHHcc
Confidence            89888888888 5666443


No 40 
>PF14208 DUF4320:  Domain of unknown function (DUF4320)
Probab=32.14  E-value=65  Score=21.59  Aligned_cols=24  Identities=13%  Similarity=0.203  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHhhCCCCC-CCccHH
Q 048073           32 QDYLDAHNSARAAVYVPN-IIWNDT   55 (164)
Q Consensus        32 ~~il~~hN~~R~~~~m~~-L~Wd~~   55 (164)
                      ++-.+..+.+|.+.+..| .+|++|
T Consensus        44 ~e~~~~~~~l~~k~g~~~~i~w~~e   68 (116)
T PF14208_consen   44 SETVDRIEDLSEKTGLDPMISWSCE   68 (116)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEeec
Confidence            345666677777776533 447644


No 41 
>PRK14762 membrane protein; Provisional
Probab=30.23  E-value=72  Score=15.19  Aligned_cols=17  Identities=24%  Similarity=0.397  Sum_probs=8.6

Q ss_pred             CcchhhHHHHHHHHHHHH
Q 048073            1 MKMSSISLALAICFMGSL   18 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~   18 (164)
                      ||...-.+.++ ++++++
T Consensus         1 mki~lw~i~ii-fligll   17 (27)
T PRK14762          1 MKIILWAVLII-FLIGLL   17 (27)
T ss_pred             CeeHHHHHHHH-HHHHHH
Confidence            66655444444 555533


No 42 
>PRK15300 fimbrial protein StiA; Provisional
Probab=30.05  E-value=36  Score=24.33  Aligned_cols=10  Identities=40%  Similarity=0.541  Sum_probs=6.2

Q ss_pred             CcchhhHHHH
Q 048073            1 MKMSSISLAL   10 (164)
Q Consensus         1 m~~~~~~~~l   10 (164)
                      |||+++.+.+
T Consensus         1 mk~~~~~~~~   10 (179)
T PRK15300          1 MKLSLKTLTV   10 (179)
T ss_pred             CceeehhHHH
Confidence            8998544433


No 43 
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=30.00  E-value=1.4e+02  Score=22.11  Aligned_cols=20  Identities=10%  Similarity=0.205  Sum_probs=12.2

Q ss_pred             CCCCCccHHHHHHHHHHHhh
Q 048073           47 VPNIIWNDTVAAYAQNYSNS   66 (164)
Q Consensus        47 m~~L~Wd~~La~~A~~~a~~   66 (164)
                      +..|++|-+|++.-+++.++
T Consensus        44 l~~~e~sGel~~~~~~~~~r   63 (202)
T TIGR02743        44 LKRLEQSGELKAMQQRFQSR   63 (202)
T ss_pred             HHhhhhCchHHHHHHHHHHH
Confidence            34567777777666655543


No 44 
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=29.62  E-value=45  Score=24.09  Aligned_cols=20  Identities=20%  Similarity=0.400  Sum_probs=18.0

Q ss_pred             CCCCCccHHHHHHHHHHHhh
Q 048073           47 VPNIIWNDTVAAYAQNYSNS   66 (164)
Q Consensus        47 m~~L~Wd~~La~~A~~~a~~   66 (164)
                      ..+|+|.+.|+..|-..|..
T Consensus        39 ~~~lTWvdSLavAAga~are   58 (182)
T COG1318          39 YERLTWVDSLAVAAGALARE   58 (182)
T ss_pred             ccccchhhHHHHHHHHHHHH
Confidence            66899999999999999984


No 45 
>PF03295 Pox_TAA1:  Poxvirus trans-activator protein A1 C-terminal;  InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=28.15  E-value=66  Score=18.94  Aligned_cols=19  Identities=21%  Similarity=0.328  Sum_probs=16.1

Q ss_pred             CchHHHHHHHHHHHhhCCC
Q 048073           29 NSPQDYLDAHNSARAAVYV   47 (164)
Q Consensus        29 ~~~~~il~~hN~~R~~~~m   47 (164)
                      +..+++++.+|.+|+.-|.
T Consensus        24 ~~Pe~Vi~iIN~lR~keGv   42 (63)
T PF03295_consen   24 EDPEEVINIINELRNKEGV   42 (63)
T ss_pred             cCHHHHHHHHHHhhhccCc
Confidence            5678999999999998763


No 46 
>PF04202 Mfp-3:  Foot protein 3;  InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=27.80  E-value=61  Score=19.43  Aligned_cols=6  Identities=33%  Similarity=0.600  Sum_probs=2.4

Q ss_pred             hHHHHH
Q 048073            6 ISLALA   11 (164)
Q Consensus         6 ~~~~l~   11 (164)
                      +++++|
T Consensus         4 ~Si~VL    9 (71)
T PF04202_consen    4 LSIAVL    9 (71)
T ss_pred             hhHHHH
Confidence            333444


No 47 
>PF08194 DIM:  DIM protein;  InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=25.58  E-value=70  Score=16.75  Aligned_cols=6  Identities=50%  Similarity=0.528  Sum_probs=3.9

Q ss_pred             Ccchhh
Q 048073            1 MKMSSI    6 (164)
Q Consensus         1 m~~~~~    6 (164)
                      ||.+.+
T Consensus         1 Mk~l~~    6 (36)
T PF08194_consen    1 MKCLSL    6 (36)
T ss_pred             CceeHH
Confidence            777654


No 48 
>PF05436 MF_alpha_N:  Mating factor alpha precursor N-terminus;  InterPro: IPR008675 This entry contains the N-terminal regions of the Saccharomyces mating factor alpha precursor protein. All proteins in this family contain one or more copies of IPR006742 from INTERPRO further toward their C terminus.; GO: 0007618 mating, 0005576 extracellular region
Probab=25.19  E-value=43  Score=21.25  Aligned_cols=11  Identities=64%  Similarity=0.513  Sum_probs=7.8

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      ||.+.++..+.
T Consensus         1 MKf~siLsa~a   11 (86)
T PF05436_consen    1 MKFSSILSAAA   11 (86)
T ss_pred             CchHHHHHHHH
Confidence            88887666655


No 49 
>PRK11546 zraP zinc resistance protein; Provisional
Probab=25.17  E-value=1.5e+02  Score=20.73  Aligned_cols=20  Identities=15%  Similarity=0.164  Sum_probs=12.1

Q ss_pred             CCCCchHHHHHHHHHHHhhC
Q 048073           26 HAQNSPQDYLDAHNSARAAV   45 (164)
Q Consensus        26 ~~~~~~~~il~~hN~~R~~~   45 (164)
                      ++++.++.+=..|++|-.+.
T Consensus        44 LT~EQQa~~q~I~~~f~~~t   63 (143)
T PRK11546         44 LTTEQQAAWQKIHNDFYAQT   63 (143)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
Confidence            55566666666666665544


No 50 
>PF08138 Sex_peptide:  Sex peptide (SP) family;  InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=24.48  E-value=25  Score=20.10  Aligned_cols=17  Identities=29%  Similarity=0.352  Sum_probs=0.0

Q ss_pred             CcchhhHHHHHHHHHHHH
Q 048073            1 MKMSSISLALAICFMGSL   18 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~   18 (164)
                      ||-..++++|+ +++++.
T Consensus         1 Mk~p~~llllv-lllGla   17 (56)
T PF08138_consen    1 MKTPIFLLLLV-LLLGLA   17 (56)
T ss_dssp             ------------------
T ss_pred             CcchHHHHHHH-HHHHHH
Confidence            66665544444 555533


No 51 
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=23.30  E-value=93  Score=22.16  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=11.6

Q ss_pred             CcchhhHHHHHHHHHHHHHH
Q 048073            1 MKMSSISLALAICFMGSLAL   20 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~   20 (164)
                      |||...++... +++.++.+
T Consensus         1 M~~~k~l~~~~-~~a~v~s~   19 (179)
T COG3470           1 MKMKKLLLSAA-ILASVFSA   19 (179)
T ss_pred             CchHHHHHHHH-HHHHHHhh
Confidence            88887666666 44444443


No 52 
>PRK15396 murein lipoprotein; Provisional
Probab=22.96  E-value=1.2e+02  Score=18.90  Aligned_cols=12  Identities=17%  Similarity=0.235  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHhh
Q 048073           33 DYLDAHNSARAA   44 (164)
Q Consensus        33 ~il~~hN~~R~~   44 (164)
                      .+..-+|..|..
T Consensus        43 ql~~dv~~~~~~   54 (78)
T PRK15396         43 QLSNDVNAMRSD   54 (78)
T ss_pred             HHHHHHHHHHHH
Confidence            344444444443


No 53 
>PF10880 DUF2673:  Protein of unknown function (DUF2673);  InterPro: IPR024247 This family of proteins with unknown function appears to be restricted to Rickettsiae spp.
Probab=22.94  E-value=84  Score=18.16  Aligned_cols=11  Identities=27%  Similarity=0.051  Sum_probs=5.8

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      ||-++.+|+++
T Consensus         1 mknllkillil   11 (65)
T PF10880_consen    1 MKNLLKILLIL   11 (65)
T ss_pred             ChhHHHHHHHH
Confidence            66655544444


No 54 
>PRK02710 plastocyanin; Provisional
Probab=22.78  E-value=74  Score=21.11  Aligned_cols=17  Identities=18%  Similarity=0.372  Sum_probs=9.9

Q ss_pred             CCEEEEEEecCCCCCCC
Q 048073          144 GWWFVTCSYDPPGNYIG  160 (164)
Q Consensus       144 ~~~~~vC~Y~p~gn~~g  160 (164)
                      |.+.+.|...+...+.|
T Consensus        98 G~y~y~C~~H~~~gM~G  114 (119)
T PRK02710         98 GTYTYYCEPHRGAGMVG  114 (119)
T ss_pred             EEEEEEcCCCccCCcEE
Confidence            34677887665444444


No 55 
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=22.25  E-value=94  Score=22.28  Aligned_cols=11  Identities=27%  Similarity=0.277  Sum_probs=6.8

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      |||...+++.+
T Consensus         1 ~~~~kkl~~~~   11 (170)
T PRK12750          1 MKLAKKLVLAA   11 (170)
T ss_pred             CchHHHHHHHH
Confidence            78886544444


No 56 
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=21.97  E-value=1.6e+02  Score=19.20  Aligned_cols=11  Identities=36%  Similarity=0.380  Sum_probs=4.6

Q ss_pred             CcchhhHHHHH
Q 048073            1 MKMSSISLALA   11 (164)
Q Consensus         1 m~~~~~~~~l~   11 (164)
                      ||+..++++++
T Consensus         2 ~~~~~~L~~~v   12 (100)
T PRK02898          2 MKKNLLLLLLV   12 (100)
T ss_pred             chHHHHHHHHH
Confidence            34444444434


No 57 
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=21.03  E-value=1.4e+02  Score=18.84  Aligned_cols=22  Identities=18%  Similarity=-0.072  Sum_probs=11.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhh
Q 048073            1 MKMSSISLALAICFMGSLALLIQ   23 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~~~   23 (164)
                      ||...++..++ +.++++..++.
T Consensus         1 mk~klll~avi-Ls~~LLaGCAs   22 (85)
T PRK09973          1 MKTIFTVGAVV-LATCLLSGCVN   22 (85)
T ss_pred             CchhHHHHHHH-HHHHHHHHcCC
Confidence            67665555555 44443343333


No 58 
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.17  E-value=1.1e+02  Score=21.43  Aligned_cols=25  Identities=20%  Similarity=0.033  Sum_probs=12.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhccC
Q 048073            1 MKMSSISLALAICFMGSLALLIQTSH   26 (164)
Q Consensus         1 m~~~~~~~~l~~~~~~~~~~~~~~~~   26 (164)
                      |+.|..+.+|+ +++.++...+++..
T Consensus         1 M~rf~~i~lL~-~A~lls~plva~e~   25 (166)
T COG3495           1 MNRFTSITLLA-AALLLSAPLVAAET   25 (166)
T ss_pred             CchhHHHHHHH-HHHHhcchhhhccc
Confidence            77776555555 33333443444433


Done!