BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048074
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound
Phospholipid At 2.0 Angstroms Resolution
Length = 270
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 132/242 (54%), Gaps = 26/242 (10%)
Query: 3 QQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWN 62
+ + G EGV+VL N P+E D +GQYT K+Y QSK P +++ AP AL +HE+AWN
Sbjct: 30 KNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWN 89
Query: 63 SYPRCKTV-SNTFIDLFLQCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVL 121
+YP C+TV +N ++ F + IET HK D G +NVH L E + +
Sbjct: 90 AYPYCRTVITNEYMK--------EDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYI 141
Query: 122 DIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW------QDRCNPVMTAYK 171
DIA ++DY D +KFKS +TGRGPL W Q C P M AYK
Sbjct: 142 DIADRSQVLSKDY------KAEEDPAKFKSVKTGRGPLGPNWKQELVNQKDC-PYMCAYK 194
Query: 172 LVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSL 231
LVT+ +WG ++E + E+ LF HR F W+D+W +TM IR +E+++ L
Sbjct: 195 LVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQL 254
Query: 232 NE 233
+E
Sbjct: 255 DE 256
>pdb|1T27|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine
Length = 271
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 132/242 (54%), Gaps = 26/242 (10%)
Query: 3 QQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWN 62
+ + G EGV+VL N P+E D +GQYT K+Y QSK P +++ AP AL +HE+AWN
Sbjct: 31 KNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWN 90
Query: 63 SYPRCKTV-SNTFIDLFLQCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVL 121
+YP C+TV +N ++ F + IET HK D G +NVH L E + +
Sbjct: 91 AYPYCRTVITNEYMK--------EDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYI 142
Query: 122 DIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW------QDRCNPVMTAYK 171
DIA ++DY D +KFKS +TGRGPL W Q C P M AYK
Sbjct: 143 DIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDC-PYMCAYK 195
Query: 172 LVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSL 231
LVT+ +WG ++E + E+ LF HR F W+D+W +TM IR +E+++ L
Sbjct: 196 LVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQL 255
Query: 232 NE 233
+E
Sbjct: 256 DE 257
>pdb|1UW5|A Chain A, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|B Chain B, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|C Chain C, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|D Chain D, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
Length = 270
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 128/242 (52%), Gaps = 27/242 (11%)
Query: 3 QQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWN 62
+ + G EGV+VL N P+E D +GQYT K+Y QSK P +++ AP AL +HE+AWN
Sbjct: 31 KNETGGGEGVEVLVNEPYEKD-GEKGQYTHKIYHLQSKVPTFVRXLAPEGALNIHEKAWN 89
Query: 63 SYPRCKTV-SNTFIDLFLQCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVL 121
+YP C+TV +N + F + IET HK D G +NVH L E + +
Sbjct: 90 AYPYCRTVITNEYXK--------EDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYI 141
Query: 122 DIAS----TARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW------QDRCNPVMTAYK 171
DIA ++DY D +KFKS +TGRGPL W Q C P AYK
Sbjct: 142 DIADRSQVLSKDY------KAEEDPAKFKSIKTGRGPLGPNWKQELVNQKDC-PYXCAYK 194
Query: 172 LVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSL 231
LVT+ +WG ++E + ER LF HR F W+D+W +T IR E+++ L
Sbjct: 195 LVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTXDDIRRXEEETKRQL 254
Query: 232 NE 233
+E
Sbjct: 255 DE 256
>pdb|2A1L|A Chain A, Rat Pitp-Beta Complexed To Phosphatidylcholine
Length = 270
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 129/235 (54%), Gaps = 17/235 (7%)
Query: 3 QQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWN 62
+ + G EG++VL+N P+E+D +GQYT K+Y +SK PA+++ AP +LV HE+AWN
Sbjct: 30 KNETGGGEGIEVLKNEPYEND-GEKGQYTHKIYHLKSKVPAFVRMIAPEGSLVFHEKAWN 88
Query: 63 SYPRCKT-VSNTFIDLFLQCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVL 121
+YP C+T V+N ++ F + IET HK D G +NVH L ++ +
Sbjct: 89 AYPYCRTIVTNEYMK--------DDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHI 140
Query: 122 DIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQDRCN-----PVMTAYKLVTID 176
DIA R A + D + F+S +T RGPL W+ P M AYKLVTI
Sbjct: 141 DIAD--RSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELANTPDCPKMCAYKLVTIK 198
Query: 177 APYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSL 231
+WG ++E + E+ +F HR F WID+W +TM+ IR +E ++ L
Sbjct: 199 FKWWGLQSKVENFIQKQEKRIFTNLHRQLFCWIDKWIDLTMEDIRRMEDETQKEL 253
>pdb|3HXT|A Chain A, Structure Of Human Mthfs
pdb|3HY3|A Chain A, Structure Of Human Mthfs With 10-Formyltetrahydrofolate
pdb|3HY4|A Chain A, Structure Of Human Mthfs With N5-Iminium Phosphate
pdb|3HY6|A Chain A, Structure Of Human Mthfs With Adp
Length = 203
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 13 DVLENRPFEHDVFGRGQYTF-KVYRFQSKAPAWLKTFAPADALVMHEEAWN 62
D +E D+F RG+ F YRFQS ++ +P + ++ + +WN
Sbjct: 60 DEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWN 110
>pdb|1TH8|B Chain B, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-Sigma Factor Spoiiab In Complex With The
Anti-Anti-Sigma Spoiiaa: Inhibitory Complex With Adp,
Crystal Form Ii
pdb|1THN|B Chain B, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-sigma Factor Spoiiab In Complex With The
Anti-anti-sigma Spoiiaa: Inhibitory Complex With Adp,
Crystal Form I
pdb|1THN|D Chain D, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-sigma Factor Spoiiab In Complex With The
Anti-anti-sigma Spoiiaa: Inhibitory Complex With Adp,
Crystal Form I
Length = 116
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 13 DVLENRPFEHDVFGRGQYTF 32
DVLENR H V GQ TF
Sbjct: 36 DVLENRAIRHIVLNLGQLTF 55
>pdb|1TIL|B Chain B, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-Sigma Factor Spoiiab In Complex With The
Anti-Anti-Sigma Spoiiaa:poised For Phosphorylation
Complex With Atp, Crystal Form Ii
pdb|1TIL|D Chain D, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-Sigma Factor Spoiiab In Complex With The
Anti-Anti-Sigma Spoiiaa:poised For Phosphorylation
Complex With Atp, Crystal Form Ii
pdb|1TIL|F Chain F, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-Sigma Factor Spoiiab In Complex With The
Anti-Anti-Sigma Spoiiaa:poised For Phosphorylation
Complex With Atp, Crystal Form Ii
Length = 119
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 13 DVLENRPFEHDVFGRGQYTF 32
DVLENR H V GQ TF
Sbjct: 39 DVLENRAIRHIVLNLGQLTF 58
>pdb|1TID|B Chain B, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-Sigma Factor Spoiiab In Complex With The
Anti-Anti-Sigma Spoiiaa: Poised For Phosphorylation
Complex With Atp, Crystal Form I
pdb|1TID|D Chain D, Crystal Structures Of The Adp And Atp Bound Forms Of The
Bacillus Anti-Sigma Factor Spoiiab In Complex With The
Anti-Anti-Sigma Spoiiaa: Poised For Phosphorylation
Complex With Atp, Crystal Form I
Length = 119
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 13 DVLENRPFEHDVFGRGQYTF 32
DVLENR H V GQ TF
Sbjct: 39 DVLENRAIRHIVLNLGQLTF 58
>pdb|4H6J|A Chain A, Identification Of Cys 255 In Hif-1 As A Novel Site For
Development Of Covalent Inhibitors Of Hif-1 ARNT PASB
DOMAIN PROTEIN-Protein Interaction
Length = 113
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 21 EHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFLQ 80
HD+F +GQ T YR +K ++ + A V++ NS P+C N + +Q
Sbjct: 56 HHDMFTKGQVTTGQYRMLAKRGGYV--WVETQATVIYNTK-NSQPQCIVCVNYVVSGIIQ 112
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 151 GRGPLSEGWQD---RCNPVMTA-YKLVTIDAPYWG 181
G GP + GW + +P++ A Y+++ +D P WG
Sbjct: 44 GSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWG 78
>pdb|4GKQ|A Chain A, Structure Of The Neck And C-Terminal Motor Homology Domain
Of Vik1 From Candida Glabrata
pdb|4GKQ|B Chain B, Structure Of The Neck And C-Terminal Motor Homology Domain
Of Vik1 From Candida Glabrata
Length = 286
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 70 VSNTFIDL--FLQCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEV 120
+ NTF L F + YF KF +T++ V +DN S ++ LS + + VE+
Sbjct: 104 IPNTFEKLLAFFKNNYFDKFVITLQYVMLSDNADSQDL--LSNNKDGGKDVEI 154
>pdb|4GKP|A Chain A, Structure Of The Truncated Neck And C-Terminal Motor
Homology Domain Of Vik1 From Candida Glabrata
pdb|4GKP|B Chain B, Structure Of The Truncated Neck And C-Terminal Motor
Homology Domain Of Vik1 From Candida Glabrata
Length = 275
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 70 VSNTFIDL--FLQCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEV 120
+ NTF L F + YF KF +T++ V +DN S ++ LS + + VE+
Sbjct: 93 IPNTFEKLLAFFKNNYFDKFVITLQYVMLSDNADSQDL--LSNNKDGGKDVEI 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,003,323
Number of Sequences: 62578
Number of extensions: 272551
Number of successful extensions: 535
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 15
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)