Query         048074
Match_columns 233
No_of_seqs    118 out of 257
Neff          4.9 
Searched_HMMs 46136
Date          Fri Mar 29 06:02:05 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048074hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd08888 SRPBCC_PITPNA-B_like L 100.0  2E-110  3E-115  746.4  20.6  222    1-233    27-255 (258)
  2 cd08890 SRPBCC_PITPNC1_like Li 100.0  3E-110  7E-115  741.8  21.2  221    1-233    27-247 (250)
  3 cd07815 SRPBCC_PITP Lipid-bind 100.0  3E-110  6E-115  743.3  20.8  222    1-233    27-248 (251)
  4 cd08889 SRPBCC_PITPNM1-2_like  100.0  4E-110  9E-115  744.6  20.9  222    1-233    28-257 (260)
  5 PF02121 IP_trans:  Phosphatidy 100.0  7E-108  2E-112  731.0  19.2  220    1-231    28-254 (254)
  6 KOG3668 Phosphatidylinositol t 100.0  1E-106  3E-111  714.5  20.6  221    1-232    29-254 (269)
  7 PF04707 PRELI:  PRELI-like fam  94.8    0.31 6.7E-06   40.8   9.7   49   11-63     21-70  (157)
  8 PF10698 DUF2505:  Protein of u  63.3     8.3 0.00018   31.9   3.3   37  173-209   123-159 (159)
  9 KOG3336 Predicted member of th  59.5      22 0.00048   31.2   5.3   47   10-60     34-81  (185)
 10 PF07156 Prenylcys_lyase:  Pren  52.3      13 0.00029   35.4   3.1   42   26-68    262-303 (368)
 11 PF15581 Imm35:  Immunity prote  36.2      27 0.00059   27.5   2.0   18  211-228    42-60  (93)
 12 PF10544 T5orf172:  T5orf172 do  33.1      42 0.00091   24.6   2.6   73  145-223    17-95  (100)
 13 PF08671 SinI:  Anti-repressor   27.4      40 0.00086   21.3   1.3   11  213-223    15-25  (30)
 14 PF09510 Rtt102p:  Rtt102p-like  25.0      35 0.00075   28.3   0.9   22   81-102    47-68  (130)
 15 PF13455 MUG113:  Meiotically u  23.3      87  0.0019   23.7   2.8   43  180-223    35-79  (83)

No 1  
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=100.00  E-value=1.6e-110  Score=746.44  Aligned_cols=222  Identities=41%  Similarity=0.782  Sum_probs=217.3

Q ss_pred             CCccccCCCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEeccccccccc
Q 048074            1 MQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFLQ   80 (233)
Q Consensus         1 ~S~~et~~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~~~~~~~~~t   80 (233)
                      +|+++||||||||||+||||+++++|+||||||||||+||||+|||+++|++||+|+|+||||||||+|+|        +
T Consensus        27 ~S~eet~~GeGVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wir~~~P~~al~v~EkaWNaYPy~~T~y--------t   98 (258)
T cd08888          27 ASKNETGGGEGIEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPGFVRMLAPEGSLEIHEKAWNAYPYCRTII--------T   98 (258)
T ss_pred             hhHhhcCCCccEEEEeccccccCCCCcceeEEEEEEccccchhHHHHhCCCcceEEehhhhcCCCceEEEE--------e
Confidence            68999999999999999999999989999999999999999999999999999999999999999999999        9


Q ss_pred             cCCcc-ceEEEEEeEEeCCCCCCcCcCCCCHhhhcceeeEEeeccCCc-CCccccccCCCccCCCcceecccCCCCCCcc
Q 048074           81 CPYFT-KFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTA-RDYWSYAIASNNVDFSKFKSKRTGRGPLSEG  158 (233)
Q Consensus        81 ~~~~~-kF~i~IET~~~~d~g~~eNv~~L~~~~l~~ReV~~iDIa~d~-~~~~~~~~y~~~eDp~~f~S~ktgRGPL~~~  158 (233)
                      ||||+ +|+|.|||+|.+|+|++|||||||+++|++|+|++||||+|+ +++   ++|+++|||++|+|+|||||||.+|
T Consensus        99 ~~~~k~~F~i~IET~h~~d~g~~eNv~~L~~e~L~~ReV~~IDIa~d~~~~~---~dYk~eeDP~~f~S~kTgRGPL~~~  175 (258)
T cd08888          99 NEYMKEDFLIIIETWHKPDLGTQENVHNLDPEEWKEVEVVYIDIADRSQVDP---KDYKADEDPAKFQSEKTGRGPLGPN  175 (258)
T ss_pred             cCCcCccEEEEEEEEEcCCCCCccccccCCHHHHhCcEEEEEecccCCcCCc---ccCCcccCcccccccccCCCCCCcc
Confidence            99994 699999999999999999999999999999999999999999 488   9999999999999999999999999


Q ss_pred             cccc-----CCceEEEEeEEEEecccccchhHHHHHHHhhhhHHHHHhhhhheeecccccCCCHHHHHHHHHHhhhhhcC
Q 048074          159 WQDR-----CNPVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSLNE  233 (233)
Q Consensus       159 W~~~-----~~piM~~YKlv~v~f~~wGlq~~vE~~I~~~~r~i~~~~HRq~fcw~DeW~~lTmedIR~~E~e~~~~L~~  233 (233)
                      |+++     +.|||||||||+|+|+|||||+|||+|||+++|++|+++||||||||||||||||+|||+||++||++|++
T Consensus       176 W~~~~~~~~~~PiMcaYKLv~v~f~~wG~q~rvE~fI~~~~r~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~  255 (258)
T cd08888         176 WKKELVNQKDCPIMCAYKLVTVEFKWWGLQNKVENFIQKQERRLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDE  255 (258)
T ss_pred             hhhhcccCCCCCEEEEeEEEEEEEeeecccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            9998     67999999999999999999999999999999999999999999999999999999999999999999974


No 2  
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously 
Probab=100.00  E-value=3.1e-110  Score=741.84  Aligned_cols=221  Identities=39%  Similarity=0.686  Sum_probs=218.1

Q ss_pred             CCccccCCCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEeccccccccc
Q 048074            1 MQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFLQ   80 (233)
Q Consensus         1 ~S~~et~~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~~~~~~~~~t   80 (233)
                      +|+++||||||||||+||||+++++|+||||||||||+||||+|+|+++|++ |+|+|+||||||||+|+|        +
T Consensus        27 ~S~eet~~geGVEvl~Nep~~~~~~~~GqYT~K~~hl~sklP~w~r~~~P~~-l~v~EkaWNaYPy~~T~y--------~   97 (250)
T cd08890          27 HSHEQSERGEGVEVVQNEPCEDPEHGNGQFTEKRVYLNSRLPSWARAVVPKI-FYVTEKAWNYYPYTITEY--------T   97 (250)
T ss_pred             hhHhhcCCCccEEEEeccccccCCCCccceeEEEEEccccChhHHHHhCCcc-eEEehhhhccCCceeeee--------c
Confidence            6899999999999999999999999999999999999999999999999987 999999999999999999        9


Q ss_pred             cCCccceEEEEEeEEeCCCCCCcCcCCCCHhhhcceeeEEeeccCCcCCccccccCCCccCCCcceecccCCCCCCcccc
Q 048074           81 CPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQ  160 (233)
Q Consensus        81 ~~~~~kF~i~IET~~~~d~g~~eNv~~L~~~~l~~ReV~~iDIa~d~~~~~~~~~y~~~eDp~~f~S~ktgRGPL~~~W~  160 (233)
                      ||||++|+|+|||+|.+|+|++|||||||+++|++|+|++||||+|++++   ++|+++|||++|+|+|||||||.+||+
T Consensus        98 ~~~~~kf~i~IET~h~~d~g~~eN~~~L~~~~L~~ReV~~IDIa~d~v~~---~dYk~eeDp~~f~S~kTgRGPL~~~W~  174 (250)
T cd08890          98 CSFLPKFSIHIETKYEDNKGKSENCIFLSEAELSEREVCHLDIAYDEIPE---KYYKEEEDPKYFKSEKTGRGPLKEGWR  174 (250)
T ss_pred             cCCcCcEEEEEEEEEcCCCCCccccccCCHHHhcCceEEEEecccCCCCc---ccCCcccCCccccccccCCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999   999999999999999999999999999


Q ss_pred             ccCCceEEEEeEEEEecccccchhHHHHHHHhhhhHHHHHhhhhheeecccccCCCHHHHHHHHHHhhhhhcC
Q 048074          161 DRCNPVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSLNE  233 (233)
Q Consensus       161 ~~~~piM~~YKlv~v~f~~wGlq~~vE~~I~~~~r~i~~~~HRq~fcw~DeW~~lTmedIR~~E~e~~~~L~~  233 (233)
                      +++.|||||||||+|+|+|||||+|||+|||+++|++|+++||||||||||||||||+|||+||+++|++|++
T Consensus       175 ~~~~PiMcaYKLv~v~f~~wG~q~rvE~~I~~~~r~~~l~~HRq~fcW~DeW~gltmedIR~~E~e~~~~l~~  247 (250)
T cd08890         175 ETHKPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLLGHRQAFAWVDEWYDMTMDDVREYERTIQEKTNE  247 (250)
T ss_pred             cCCCceEEEEEEEEEEEeeecccHHHHHHHHHHHHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999974


No 3  
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA  PITPs (PITPNM1/PITPalphaI/Nir2,  PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB  PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns 
Probab=100.00  E-value=2.9e-110  Score=743.25  Aligned_cols=222  Identities=48%  Similarity=0.914  Sum_probs=219.4

Q ss_pred             CCccccCCCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEeccccccccc
Q 048074            1 MQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFLQ   80 (233)
Q Consensus         1 ~S~~et~~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~~~~~~~~~t   80 (233)
                      +|+++||||||||||+||||+++++|+||||||||||+||||+|||+++|++||+|+|+||||||||+|+|        +
T Consensus        27 ~S~eet~~GeGVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T~y--------~   98 (251)
T cd07815          27 ASKEETGSGEGVEVLKNEPYEDENGGKGQYTHKIYHLGSKLPSWLRALAPKSALTIEEKSWNAYPYCKTVY--------S   98 (251)
T ss_pred             hhHhhcCCCccEEEEeccCcccCCCCcceeEEEEEEccccchhHHHHhCCccceEEEhhhhCCCCceeEEE--------e
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999        9


Q ss_pred             cCCccceEEEEEeEEeCCCCCCcCcCCCCHhhhcceeeEEeeccCCcCCccccccCCCccCCCcceecccCCCCCCcccc
Q 048074           81 CPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGWQ  160 (233)
Q Consensus        81 ~~~~~kF~i~IET~~~~d~g~~eNv~~L~~~~l~~ReV~~iDIa~d~~~~~~~~~y~~~eDp~~f~S~ktgRGPL~~~W~  160 (233)
                      ||||++|+|+|||+|.+|+|++|||||||+++|++|+|++||||+|++++   ++|+++|||++|+|+|||||||.+||+
T Consensus        99 ~~~~~kf~i~IET~h~~d~g~~eNv~~L~~~~L~~ReV~~IDIa~d~~~~---~dYk~eeDp~~f~S~kTgRGPL~~~W~  175 (251)
T cd07815          99 CPFFEKFSISIESMHKPDLGTQENAHNLSAEQLAQRKVVVIDIANDSVAS---KDYKPEEDPKLFKSKKTGRGPLRKGWR  175 (251)
T ss_pred             cCCCCcEEEEEEEEEcCCCCCcccccCCCHHHHhCcEEEEEeccCCCCCc---ccCCcccCCchhcccccCCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999   999999999999999999999999999


Q ss_pred             ccCCceEEEEeEEEEecccccchhHHHHHHHhhhhHHHHHhhhhheeecccccCCCHHHHHHHHHHhhhhhcC
Q 048074          161 DRCNPVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSLNE  233 (233)
Q Consensus       161 ~~~~piM~~YKlv~v~f~~wGlq~~vE~~I~~~~r~i~~~~HRq~fcw~DeW~~lTmedIR~~E~e~~~~L~~  233 (233)
                      +++.|+|||||||+|+|+|||||+|||+|||+++|++|+++||||||||||||||||+|||+||++||++|++
T Consensus       176 ~~~~PiMcaYKLv~v~f~~wG~q~rvE~~I~~~~r~~~l~~HRq~fcW~DeW~gltmedIR~~E~e~~~~L~~  248 (251)
T cd07815         176 KSTKPIMCAYKLVTVDFPYWGLQNKVENFIQKVERDVFLNYHRQAFCWIDEWFDLTMEDIREFEEETKELLDA  248 (251)
T ss_pred             ccCCCeEEEEEEEEEEeeeecccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999974


No 4  
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and   PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=100.00  E-value=4e-110  Score=744.56  Aligned_cols=222  Identities=38%  Similarity=0.741  Sum_probs=217.8

Q ss_pred             CCcccc-CCCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEecccccccc
Q 048074            1 MQQQNS-NGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFL   79 (233)
Q Consensus         1 ~S~~et-~~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~~~~~~~~~   79 (233)
                      +|+++| |+|||||||+||||+++++|+||||||||||+||||+|||+++|++||+|+|+||||||||+|+|        
T Consensus        28 ~S~eet~g~GeGVEvl~Nepy~~~~~~~GqYT~Kiyhl~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T~y--------   99 (260)
T cd08889          28 KSREESKGEGSGVEILENRPYTDGPGGSGQYTHKIYHIGSHIPGWFRAILPKSALRVEEEAWNAYPYTRTRY--------   99 (260)
T ss_pred             HhhhccCCCCceEEEEeccccccCCCCcceeEEEEEEccccChHHHHHhCCCcceEEehhHhCCCCceEEEE--------
Confidence            588999 99999999999999999999999999999999999999999999999999999999999999999        


Q ss_pred             ccCCccceEEEEEeEEeCCCCCCcCcCCCCHhhhcceeeEEeeccCCcCCccccccCCCccCCCcceecccCCCCCCccc
Q 048074           80 QCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW  159 (233)
Q Consensus        80 t~~~~~kF~i~IET~~~~d~g~~eNv~~L~~~~l~~ReV~~iDIa~d~~~~~~~~~y~~~eDp~~f~S~ktgRGPL~~~W  159 (233)
                      +||||++|+|.|||+|++|+|++|||||||+++|++|+|++||||+|++++   ++|+++|||++|+|+|||||||.+||
T Consensus       100 t~~~~~kF~i~IET~h~~d~g~~eNv~~L~~~~L~~ReV~~IDIa~d~v~~---~dYk~eeDP~~f~S~kTgRGPL~~~W  176 (260)
T cd08889         100 TCPFVEKFSLDIETYYFDDAGEQENVFNLSPAELRQRIIDFIDIVKDPVPG---SDYKAEEDPKLYVSEKTGRGPLSDDW  176 (260)
T ss_pred             ecCCccceEEEEEEEEcCCCCCccccccCCHHHhhCceEEEEeccCCCCCc---cccCcccCcchhcccccCCCCCChhh
Confidence            999999999999999999999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             ccc------CCceEEEEeEEEEecccccchhHHHHHHHhhh-hHHHHHhhhhheeecccccCCCHHHHHHHHHHhhhhhc
Q 048074          160 QDR------CNPVMTAYKLVTIDAPYWGFGYRLEQALLAGE-RALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSLN  232 (233)
Q Consensus       160 ~~~------~~piM~~YKlv~v~f~~wGlq~~vE~~I~~~~-r~i~~~~HRq~fcw~DeW~~lTmedIR~~E~e~~~~L~  232 (233)
                      +++      +.|||||||||+|+|+|||||+|||+|||++. |++|+++||||||||||||||||+|||+||++||++|+
T Consensus       177 ~~~~~~~~~~~PiMcaYKLv~v~f~~wG~q~rvE~fI~~~~lr~~~l~~HRq~fcW~DeW~gltmedIR~~E~etq~~L~  256 (260)
T cd08889         177 IEEYKDPPGKGPIMCAYKLCKVEFRYWGMQTKIERFIHDVALRKVMLRAHRQAWCWQDEWYGLTMEDIRKLEEETQLALA  256 (260)
T ss_pred             hhhhcccCCCCCeEEEeEEEEEEEeeecchHHHHHHHHHhhhHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            988      67999999999999999999999999999997 99999999999999999999999999999999999997


Q ss_pred             C
Q 048074          233 E  233 (233)
Q Consensus       233 ~  233 (233)
                      +
T Consensus       257 ~  257 (260)
T cd08889         257 Q  257 (260)
T ss_pred             h
Confidence            4


No 5  
>PF02121 IP_trans:  Phosphatidylinositol transfer protein;  InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []. More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.
Probab=100.00  E-value=7e-108  Score=730.98  Aligned_cols=220  Identities=47%  Similarity=0.886  Sum_probs=188.1

Q ss_pred             CCccccCC-CccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEecccccccc
Q 048074            1 MQQQNSNG-DEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFL   79 (233)
Q Consensus         1 ~S~~et~~-GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~~~~~~~~~   79 (233)
                      +|+++|+| |||||||+||||+++++|+||||||||||+||||+|||+|+|++||+|+|+||||||||+|+|        
T Consensus        28 ~s~~et~g~GeGVEvl~Nep~~~~~g~~GqYT~K~y~l~sklP~~ir~l~P~~~l~v~E~aWNaYPy~~T~~--------   99 (254)
T PF02121_consen   28 ASKEETGGDGEGVEVLKNEPYEDEPGGKGQYTHKIYHLASKLPSWIRALLPKGALYVHEKAWNAYPYCKTVY--------   99 (254)
T ss_dssp             HHHCTSBT-TBEEEEEEEEEEE-TTS-EEEEEEEEEEETTTS-HHHHTTSTTTTTEEEEEEEEETTEEEEEE--------
T ss_pred             HhHhhccCCCcceEEEEecccccCCCCceeeEEEEEEecccChHHHHHhCCCceEEEEEEEecccceEEEEE--------
Confidence            48899999 999999999999999889999999999999999999999999999999999999999999999        


Q ss_pred             ccCCccceEEEEEeEEeCCCCCCcCcCCCCHhhhcceeeEEeeccCCcCCccccccCCCccCCCcceecccCCCCCCccc
Q 048074           80 QCPYFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW  159 (233)
Q Consensus        80 t~~~~~kF~i~IET~~~~d~g~~eNv~~L~~~~l~~ReV~~iDIa~d~~~~~~~~~y~~~eDp~~f~S~ktgRGPL~~~W  159 (233)
                      +||||++|+|.|||+|.||+|++|||||||+++|++|+|++||||+|++++   ++|+++|||++|+|+|||||||.+||
T Consensus       100 t~~~~~kF~i~IET~~~~d~G~~eNv~~L~~~~lk~reV~~IDI~~d~i~~---~dyk~~eDp~~f~S~ktgRGPL~~~W  176 (254)
T PF02121_consen  100 TNPYMDKFSIKIETMHKPDNGTSENVFNLSPEELKKREVVFIDIANDPISP---KDYKEEEDPTKFKSKKTGRGPLKEDW  176 (254)
T ss_dssp             EETTTGGEEEEEEEEEESSSS--TTTT---HHHHTTSEEEEE-TTGGGS-C---CC--GGG-CCC---TTT------TTH
T ss_pred             ecCCCCceEEEEEEEEcCCCCCcCcccCCCHHHhcCceEEEEEecCCcccc---cccCcccCchheEecCCCCCCCCcch
Confidence            999998899999999999999999999999999999999999999999999   99999999999999999999999999


Q ss_pred             ccc-----CCceEEEEeEEEEecccccchhHHHHHHHhhh-hHHHHHhhhhheeecccccCCCHHHHHHHHHHhhhhh
Q 048074          160 QDR-----CNPVMTAYKLVTIDAPYWGFGYRLEQALLAGE-RALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSL  231 (233)
Q Consensus       160 ~~~-----~~piM~~YKlv~v~f~~wGlq~~vE~~I~~~~-r~i~~~~HRq~fcw~DeW~~lTmedIR~~E~e~~~~L  231 (233)
                      +++     +.|+|||||||+|+|+|||||+|||+|||+++ |++|+++||||||||||||||||+|||+||++||++|
T Consensus       177 ~~~~~~~~~~PiMc~YKlv~v~f~~~GlQ~~vE~~I~~~~~r~i~~~~HRq~fcw~DeW~glTmedIR~~E~et~~~L  254 (254)
T PF02121_consen  177 RKEWKKNGKKPIMCCYKLVTVEFKWWGLQTKVENFIHKQILRRIFLNFHRQAFCWIDEWYGLTMEDIRELEEETQEEL  254 (254)
T ss_dssp             HHHHCTSSSS--EEEEEEEEEEE--TTTHHHHHHHHHHHH-HHHHHHHHHHHHHTHHHHTT--HHHHHHHHHHHHHHH
T ss_pred             hhhhhhcCCCCEEEEEEEEEEEeeeechHHHHHHHHHHhhhhHHHHHHHHHHheehhhhcCCCHHHHHHHHHHHHhcC
Confidence            987     48999999999999999999999999999998 9999999999999999999999999999999999987


No 6  
>KOG3668 consensus Phosphatidylinositol transfer protein [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00  E-value=1.4e-106  Score=714.52  Aligned_cols=221  Identities=41%  Similarity=0.745  Sum_probs=214.4

Q ss_pred             CCccccCCCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEeccccccccc
Q 048074            1 MQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFLQ   80 (233)
Q Consensus         1 ~S~~et~~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~~~~~~~~~t   80 (233)
                      +|+++|+||+|||||+||||+++++|+||||||||||+||+|+|+|+|+|++||+|||+||||||||+|+|        |
T Consensus        29 ~Sr~et~ggeGVEvl~nep~~dg~~g~GqyThKIyhl~sk~P~~~r~l~Pk~al~v~EesWNAYPy~rT~y--------T  100 (269)
T KOG3668|consen   29 KSREETGGGEGVEVLKNEPYTDGPGGSGQYTHKIYHLGSKVPAWLRSLLPKGALIVHEESWNAYPYTRTRY--------T  100 (269)
T ss_pred             hhhhccCCCcceEEEecCCCcCCCCCccceEEEEEEecccchHHHHHhCCccceEEeeecccccceEEEEE--------e
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999        9


Q ss_pred             cC-CccceEEEEEeEEeCCCCCCcCcCCCCHhhhcceeeEEeeccCCcCCccccccCCCccCCCcceecccCCCCCCccc
Q 048074           81 CP-YFTKFSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIASTARDYWSYAIASNNVDFSKFKSKRTGRGPLSEGW  159 (233)
Q Consensus        81 ~~-~~~kF~i~IET~~~~d~g~~eNv~~L~~~~l~~ReV~~iDIa~d~~~~~~~~~y~~~eDp~~f~S~ktgRGPL~~~W  159 (233)
                      |. +.++|+|.|||+|+||+|++||||+|++++|++|+|++||||+|++.+   .+|++++||++|+|+|||||||.++|
T Consensus       101 n~~~~d~F~i~IeT~~~~d~G~~eNvf~l~~~~~~~rei~~IDIa~d~v~~---~dyk~eeDP~~f~s~kTgRGpL~e~w  177 (269)
T KOG3668|consen  101 NYYMKDKFSIKIETIYLDDAGTQENVFGLDPEDLNQREIVFIDIADDPVPP---NDYKAEEDPKLFQSEKTGRGPLDENW  177 (269)
T ss_pred             cccccccceEEEEEEEcCCCCCCCCcccCChhhcceeEEEEEEeecCCCCc---cccCcccCchhheecccccCCCCcch
Confidence            94 445699999999999999999999999999999999999999999999   99999999999999999999999988


Q ss_pred             cccC----CceEEEEeEEEEecccccchhHHHHHHHhhhhHHHHHhhhhheeecccccCCCHHHHHHHHHHhhhhhc
Q 048074          160 QDRC----NPVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSLN  232 (233)
Q Consensus       160 ~~~~----~piM~~YKlv~v~f~~wGlq~~vE~~I~~~~r~i~~~~HRq~fcw~DeW~~lTmedIR~~E~e~~~~L~  232 (233)
                      .++.    .|+|||||||+|+|+|||||++||+|||+++|++|+++|||||||+|+||||||+|||++|++||.+|.
T Consensus       178 ~~~~~~~~~P~McaYKlvtvefk~wGmQ~~VE~fIhk~~~rv~~~~HRqafcw~D~W~gltm~diRe~E~~t~~~l~  254 (269)
T KOG3668|consen  178 WETYKSQGMPVMCAYKLVTVEFKWWGMQTKVENFIHKVERRVFTRAHRQAFCWQDEWYGLTMEDIRELEDETQLELI  254 (269)
T ss_pred             HHHhhccCCCeEEEeeEEEEEEEeehHHHHHHHHHHHHHHHHHHHHHHHHheehhhhhCccHHHHHHHHHHHHHHHH
Confidence            7765    299999999999999999999999999999999999999999999999999999999999999999986


No 7  
>PF04707 PRELI:  PRELI-like family;  InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=94.85  E-value=0.31  Score=40.76  Aligned_cols=49  Identities=24%  Similarity=0.355  Sum_probs=37.4

Q ss_pred             cEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcC-CCceeEEeeeeec
Q 048074           11 GVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAP-ADALVMHEEAWNS   63 (233)
Q Consensus        11 GVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~P-k~~l~v~E~aWNa   63 (233)
                      +|.||.-+  -++. |. -||++++.+...+|+|+++|++ ...+++.|+|+--
T Consensus        21 ~~Dvl~r~--vd~~-g~-l~t~Rl~~~~~~~P~w~~kl~g~~~~~~~~E~S~vD   70 (157)
T PF04707_consen   21 SVDVLDRE--VDPD-GK-LHTKRLITKKNNLPRWLKKLIGVDSECYIIEESIVD   70 (157)
T ss_pred             EEEEEEEE--EcCC-Cc-EEEeeeeeeecCchHHHHHHhCcCceEEEEEEEEEE
Confidence            34554433  2333 55 8999999999999999999999 6668899998763


No 8  
>PF10698 DUF2505:  Protein of unknown function (DUF2505);  InterPro: IPR019639  This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known. 
Probab=63.29  E-value=8.3  Score=31.91  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=31.0

Q ss_pred             EEEecccccchhHHHHHHHhhhhHHHHHhhhhheeec
Q 048074          173 VTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWI  209 (233)
Q Consensus       173 v~v~f~~wGlq~~vE~~I~~~~r~i~~~~HRq~fcw~  209 (233)
                      .+|+.++..+++++|++|...+++.+-.-++.+-.|+
T Consensus       123 g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~~~wl  159 (159)
T PF10698_consen  123 GEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFTAEWL  159 (159)
T ss_pred             EEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            5667777889999999999999999998888766554


No 9  
>KOG3336 consensus Predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.55  E-value=22  Score=31.17  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=35.1

Q ss_pred             ccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCce-eEEeee
Q 048074           10 EGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADAL-VMHEEA   60 (233)
Q Consensus        10 eGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l-~v~E~a   60 (233)
                      -||.||.-+=-++   | -.+||+++-..--+|+|+.+|+-..-+ +++|-+
T Consensus        34 i~VDvl~R~l~~~---G-kL~TeRlit~~~~~P~w~~~LiG~a~~~yv~E~S   81 (185)
T KOG3336|consen   34 IGVDVLDRKLDDS---G-KLHTERLITIHQGLPSWIHKLIGGANTCYVREVS   81 (185)
T ss_pred             EEEeeeeeeeccC---c-eEEEeeeeeeccCCcHHHHHHhCcccceEEEEEE
Confidence            3666666543322   4 699999999999999999999975443 777765


No 10 
>PF07156 Prenylcys_lyase:  Prenylcysteine lyase;  InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=52.32  E-value=13  Score=35.35  Aligned_cols=42  Identities=17%  Similarity=0.509  Sum_probs=35.1

Q ss_pred             CceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceee
Q 048074           26 GRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCK   68 (233)
Q Consensus        26 g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~   68 (233)
                      ..+.|--|||--..--+.+|..|+.. .-.++++.|.|||+-.
T Consensus       262 ~~~~~vyKIFS~~~Lt~~~L~~lF~~-~~~~~~~~W~AYP~~~  303 (368)
T PF07156_consen  262 PKGEYVYKIFSPEPLTDEFLSQLFSS-YSEVKRKEWLAYPHYS  303 (368)
T ss_pred             CCCccEEEecCCCcCCHHHHHHHhhc-cCceeeeeEeCCCCCC
Confidence            56788889988877778899999975 4679999999999853


No 11 
>PF15581 Imm35:  Immunity protein 35
Probab=36.17  E-value=27  Score=27.45  Aligned_cols=18  Identities=28%  Similarity=0.654  Sum_probs=14.5

Q ss_pred             cccCCCHHHH-HHHHHHhh
Q 048074          211 EWFGMTMQQI-REIEQQSG  228 (233)
Q Consensus       211 eW~~lTmedI-R~~E~e~~  228 (233)
                      ||-||+|++| +++|.-.+
T Consensus        42 eWRGl~~~qV~~kl~ava~   60 (93)
T PF15581_consen   42 EWRGLPEEQVLYKLEAVAA   60 (93)
T ss_pred             HHcCCCHHHHHHHHHHHHh
Confidence            7999999999 77776444


No 12 
>PF10544 T5orf172:  T5orf172 domain;  InterPro: IPR018306 This entry represents a DNA-binding domain found in bacteriophage T5, ORF172 []. The domain is related to the Bro-N and KilA-N domains that are widespread in large-DNA viruses infecting bacteria and eukaryotes []. 
Probab=33.09  E-value=42  Score=24.59  Aligned_cols=73  Identities=12%  Similarity=0.191  Sum_probs=40.3

Q ss_pred             ceecccCCCCCC--ccccccCCceEEEEeEEE-EecccccchhHHHHHHHhhhhHHHHHhhhhhe---eecccccCCCHH
Q 048074          145 FKSKRTGRGPLS--EGWQDRCNPVMTAYKLVT-IDAPYWGFGYRLEQALLAGERALFLESHRNCF---GWIDEWFGMTMQ  218 (233)
Q Consensus       145 f~S~ktgRGPL~--~~W~~~~~piM~~YKlv~-v~f~~wGlq~~vE~~I~~~~r~i~~~~HRq~f---cw~DeW~~lTme  218 (233)
                      +|=-.|.+ |..  ..|...+...-..+.++. +.+...---.++|+.||+..++     ||.-+   +=--|||.++.+
T Consensus        17 ~KIG~T~~-~~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ih~~l~~-----~~~~~~~~~~~~E~F~~~~~   90 (100)
T PF10544_consen   17 YKIGYTTN-PERRLRELNRNSTGSPFDFEVIYEFESVPVPDARKVERLIHRELKD-----YRYRIPCPDGHTEWFKLDPE   90 (100)
T ss_pred             EEEeeECC-HHHHHHHhhccccCCCCceeEEEEEEEEecCCHHHHHHHHHHHHHH-----hCccccCCCCCCEEEECCHH
Confidence            66666666 542  235532222222333332 2222233478899999988766     22212   115699999999


Q ss_pred             HHHHH
Q 048074          219 QIREI  223 (233)
Q Consensus       219 dIR~~  223 (233)
                      ++++.
T Consensus        91 ~~~~~   95 (100)
T PF10544_consen   91 EVRAV   95 (100)
T ss_pred             HHHHH
Confidence            98764


No 13 
>PF08671 SinI:  Anti-repressor SinI;  InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.37  E-value=40  Score=21.26  Aligned_cols=11  Identities=36%  Similarity=0.709  Sum_probs=7.8

Q ss_pred             cCCCHHHHHHH
Q 048074          213 FGMTMQQIREI  223 (233)
Q Consensus       213 ~~lTmedIR~~  223 (233)
                      -|+|.+|||++
T Consensus        15 ~Gls~eeir~F   25 (30)
T PF08671_consen   15 SGLSKEEIREF   25 (30)
T ss_dssp             TT--HHHHHHH
T ss_pred             cCCCHHHHHHH
Confidence            48999999986


No 14 
>PF09510 Rtt102p:  Rtt102p-like transcription regulator protein;  InterPro: IPR018304 Rtt102p (Regulator of Ty1 Transposition Protein 102) is a transcription regulator protein found in fungi that appears to be integrally associated with both the Swi-Snf and the RSC chromatin remodelling complexes, []. RSC is involved in transcription regulation and nucleosome positioning, and is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodelling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signalling pathway, for organisation of the cellular cytoskeleton. It is a probable component of the SWI/SNF complex, an ATP-dependent chromatin-remodelling complex, is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Probab=24.99  E-value=35  Score=28.30  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=15.9

Q ss_pred             cCCccceEEEEEeEEeCCCCCC
Q 048074           81 CPYFTKFSLTIETVHKADNGRS  102 (233)
Q Consensus        81 ~~~~~kF~i~IET~~~~d~g~~  102 (233)
                      ..=+.++.+.+.||++.+....
T Consensus        47 ~n~~eky~FK~KtW~k~~~~~~   68 (130)
T PF09510_consen   47 ENSLEKYPFKYKTWLKNDEDEK   68 (130)
T ss_pred             CCcccccCceEEEEEeCCCccc
Confidence            3446679999999998766433


No 15 
>PF13455 MUG113:  Meiotically up-regulated gene 113
Probab=23.35  E-value=87  Score=23.68  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             ccchhHHHHHHHhhhhHHHHHh--hhhheeecccccCCCHHHHHHH
Q 048074          180 WGFGYRLEQALLAGERALFLES--HRNCFGWIDEWFGMTMQQIREI  223 (233)
Q Consensus       180 wGlq~~vE~~I~~~~r~i~~~~--HRq~fcw~DeW~~lTmedIR~~  223 (233)
                      .+...++|+.||..+.+.-+..  ...+=-=- |||.++.+++++.
T Consensus        35 ~~~~~rvErliH~eL~~~r~~~~~c~~C~~~H-EwF~v~~~~~~~v   79 (83)
T PF13455_consen   35 VPHVHRVERLIHLELADKRLRGGECDDCGKRH-EWFEVEAEDVKEV   79 (83)
T ss_pred             cccHHHHHHHHHHHHHhcccCcccCCCCCcee-eEEeeCHHHHHHH
Confidence            3468899999999887722222  00000112 9999999888764


Done!