Query 048074
Match_columns 233
No_of_seqs 118 out of 257
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 100.0 2E-107 8E-112 730.2 21.4 222 1-233 28-256 (270)
2 1b0n_B Protein (SINI protein); 28.0 26 0.00089 24.1 1.7 12 213-224 25-36 (57)
3 3hym_A Anaphase-promoting comp 19.2 38 0.0013 20.5 0.9 17 213-229 9-25 (29)
4 1bnd_A BDNF, brain derived neu 18.9 65 0.0022 25.4 2.5 53 8-71 32-84 (119)
5 1wr3_A Ubiquitin-protein ligas 15.6 49 0.0017 19.8 0.8 13 151-163 1-13 (36)
6 2ki0_A DS119; beta-alpha-beta, 15.0 1.2E+02 0.0041 18.7 2.5 20 211-230 8-27 (36)
7 2h88_D Succinate dehydrogenase 13.7 49 0.0017 25.0 0.5 15 179-193 48-62 (103)
8 1uuz_A IVY, inhibitor of verte 13.1 68 0.0023 25.8 1.2 31 39-69 27-61 (137)
9 1b8k_A NT3, protein (neurotrop 12.8 63 0.0022 25.4 0.9 53 8-71 31-83 (119)
10 2k48_A Nucleoprotein; viral pr 11.4 72 0.0025 24.7 0.8 16 214-229 31-46 (107)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=100.00 E-value=2.4e-107 Score=730.25 Aligned_cols=222 Identities=41% Similarity=0.734 Sum_probs=214.9
Q ss_pred CCccccCCCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEeccccccccc
Q 048074 1 MQQQNSNGDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVSNTFIDLFLQ 80 (233)
Q Consensus 1 ~S~~et~~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~~~~~~~~~t 80 (233)
+|+++||||||||||+||||+++.+++||||||||||+||||+|||+++|++||+|+|+||||||||+|+| +
T Consensus 28 ~S~~etg~GeGVEvl~Nepy~~~~g~~GqYT~Kiyhl~sklP~wi~~~~P~~al~v~EkaWNayPy~~T~y--------t 99 (270)
T 1kcm_A 28 ASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVI--------T 99 (270)
T ss_dssp HHTTCSSTTTTEEEEEEEEEECTTSCEEEEEEEEEECGGGSCHHHHTTSCTTTTEEEEEEEEETTEEEEEE--------E
T ss_pred hhHhhcCCCceEEEEeccccccCCCCccceEEEEEEccccChHHHHHhCCccceEEEeehhccCcceeeEe--------c
Confidence 58999999999999999999998778999999999999999999999999999999999999999999999 9
Q ss_pred cCCccc-eEEEEEeEEeCCCCCCcCcCCCCHhhhcceeeEEeeccCC-cCCccccccCCCccCCCcceecccCCCCCCcc
Q 048074 81 CPYFTK-FSLTIETVHKADNGRSDNVHNLSEEQLAARQVEVLDIAST-ARDYWSYAIASNNVDFSKFKSKRTGRGPLSEG 158 (233)
Q Consensus 81 ~~~~~k-F~i~IET~~~~d~g~~eNv~~L~~~~l~~ReV~~iDIa~d-~~~~~~~~~y~~~eDp~~f~S~ktgRGPL~~~ 158 (233)
||||++ |+|.|||+|.||+|++|||||||+++|++|+|++||||+| ++++ ++|+++|||++|+|+|||||||.+|
T Consensus 100 ~~~~~~kF~i~IET~h~~d~g~~eNv~~L~~~~l~~reV~~IDIa~~~~~~~---~dY~~eeDp~~f~S~ktgRGPL~~~ 176 (270)
T 1kcm_A 100 NEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLS---KDYKAEEDPAKFKSVKTGRGPLGPN 176 (270)
T ss_dssp ETTTGGGEEEEEEEEEESSSSCCSSTTCCCHHHHTTCEEEEECTTCGGGSCG---GGCCGGGCTTTCCCTTTCCCCCCTT
T ss_pred CCCcCcceEEEEEEEEcCCCCCcccccCCChHHhcCceEEEEecccCccccc---ccCCcccCcchheecccCCCCCCcc
Confidence 999974 9999999999999999999999999999999999999986 5888 9999999999999999999999999
Q ss_pred ccccC-----CceEEEEeEEEEecccccchhHHHHHHHhhhhHHHHHhhhhheeecccccCCCHHHHHHHHHHhhhhhcC
Q 048074 159 WQDRC-----NPVMTAYKLVTIDAPYWGFGYRLEQALLAGERALFLESHRNCFGWIDEWFGMTMQQIREIEQQSGSSLNE 233 (233)
Q Consensus 159 W~~~~-----~piM~~YKlv~v~f~~wGlq~~vE~~I~~~~r~i~~~~HRq~fcw~DeW~~lTmedIR~~E~e~~~~L~~ 233 (233)
|++++ .|+|||||||+|+|+|||||+|||+|||+++|++|+++||||||||||||||||+|||+||++||++|++
T Consensus 177 W~~~~~~~~~~PiMc~YKLv~v~f~~wGlq~rvE~fI~~~~r~i~~~~HRq~fcW~DeW~glTmedIR~~E~etq~~L~~ 256 (270)
T 1kcm_A 177 WKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDE 256 (270)
T ss_dssp HHHHHTTSTTCCCEEEEEEEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHCCCC
T ss_pred hhhhccccCCCceEEEEEEEEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHhccHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 98763 5999999999999999999999999999999999999999999999999999999999999999999974
No 2
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=27.98 E-value=26 Score=24.09 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=10.7
Q ss_pred cCCCHHHHHHHH
Q 048074 213 FGMTMQQIREIE 224 (233)
Q Consensus 213 ~~lTmedIR~~E 224 (233)
.|||++|||++=
T Consensus 25 lGlsleEIrefL 36 (57)
T 1b0n_B 25 ANISPEEIRKYL 36 (57)
T ss_dssp TTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 799999999873
No 3
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=19.20 E-value=38 Score=20.48 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=13.4
Q ss_pred cCCCHHHHHHHHHHhhh
Q 048074 213 FGMTMQQIREIEQQSGS 229 (233)
Q Consensus 213 ~~lTmedIR~~E~e~~~ 229 (233)
..||+|||-++|+.-++
T Consensus 9 I~l~~eDi~e~E~~rke 25 (29)
T 3hym_A 9 LELKLDDIEEFENIRKD 25 (29)
T ss_dssp CCCCSGGGHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHH
Confidence 46899999999986543
No 4
>1bnd_A BDNF, brain derived neurotrophic factor; complex (growth factor-growth factor) complex; 2.30A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b8m_A
Probab=18.94 E-value=65 Score=25.35 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=37.7
Q ss_pred CCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEe
Q 048074 8 GDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVS 71 (233)
Q Consensus 8 ~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~ 71 (233)
.|..|+||..=+. ..|+|+.-.|--.=+-|.- .+.+..-|+++.|| -||+|..
T Consensus 32 ~G~~VtVl~~v~~-----~n~~~kQyF~ET~C~~~~~----~~~gCrGID~rhwn--S~C~ttq 84 (119)
T 1bnd_A 32 SGGTVTVLEKVPV-----SKGQLKQYFYETKCNPMGY----TKEGCRGIDKRHWN--SQCRTTQ 84 (119)
T ss_dssp TSCEEEECSEEEC-----SSSEEECEEEEEEECTTSG----GGSSCTTBCTTTEE--EEEEEEE
T ss_pred CCCEEEEEEEEec-----CCCceEEEEEEEEeCCCCC----CCCCccCEeccccc--ceecCce
Confidence 5788999977665 2356766666666555532 47789999999999 5677754
No 5
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=15.55 E-value=49 Score=19.76 Aligned_cols=13 Identities=38% Similarity=1.132 Sum_probs=10.1
Q ss_pred CCCCCCccccccC
Q 048074 151 GRGPLSEGWQDRC 163 (233)
Q Consensus 151 gRGPL~~~W~~~~ 163 (233)
|-+||.+||....
T Consensus 1 g~~~LP~GWe~~~ 13 (36)
T 1wr3_A 1 GSPPLPPGWEEKV 13 (36)
T ss_dssp CCSCSCTTEEEEE
T ss_pred CCCCCCCCCEEEE
Confidence 5689999998653
No 6
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=15.02 E-value=1.2e+02 Score=18.69 Aligned_cols=20 Identities=15% Similarity=0.559 Sum_probs=17.1
Q ss_pred cccCCCHHHHHHHHHHhhhh
Q 048074 211 EWFGMTMQQIREIEQQSGSS 230 (233)
Q Consensus 211 eW~~lTmedIR~~E~e~~~~ 230 (233)
-|.|=|-+++.++.+|.+.+
T Consensus 8 iwvggtpeelkklkeeakka 27 (36)
T 2ki0_A 8 IWVGGTPEELKKLKEEAKKA 27 (36)
T ss_dssp CCBCCCHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHhc
Confidence 38999999999998887764
No 7
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=13.71 E-value=49 Score=24.98 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=13.3
Q ss_pred cccchhHHHHHHHhh
Q 048074 179 YWGFGYRLEQALLAG 193 (233)
Q Consensus 179 ~wGlq~~vE~~I~~~ 193 (233)
.||||.-+|.+|++.
T Consensus 48 ~~G~q~vI~DYv~~~ 62 (103)
T 2h88_D 48 HWGLGQVITDYVHGD 62 (103)
T ss_dssp HHHHHHHHHHHCCSH
T ss_pred HHhcCeeeecccccc
Confidence 489999999999964
No 8
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=13.05 E-value=68 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=21.1
Q ss_pred CCchhHHHhh----cCCCceeEEeeeeecCceeeE
Q 048074 39 SKAPAWLKTF----APADALVMHEEAWNSYPRCKT 69 (233)
Q Consensus 39 sklP~w~~~~----~Pk~~l~v~E~aWNaYPy~~T 69 (233)
..||.||+.. .|..++.+.=+.|-..+.|+.
T Consensus 27 ~~LP~WV~~~~GtssP~~~V~~~G~~Ylvg~~Ckp 61 (137)
T 1uuz_A 27 SDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKP 61 (137)
T ss_dssp CSCCHHHHTTCSCBCCCEEEEETTEEEEEEEEECT
T ss_pred CCCcHHHHhCCCCCCCCeeEEECCEEEEEEcccCC
Confidence 5799999988 355556665566666666654
No 9
>1b8k_A NT3, protein (neurotrophin-3); complex (growth factor/growth factor), hormone/growth factor complex; 2.15A {Homo sapiens} SCOP: g.17.1.3 PDB: 1nt3_A 3buk_A* 1bnd_B
Probab=12.75 E-value=63 Score=25.41 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCccEEEEEceecCCCCCCceeEEEEEEEecCCchhHHHhhcCCCceeEEeeeeecCceeeEEe
Q 048074 8 GDEGVDVLENRPFEHDVFGRGQYTFKVYRFQSKAPAWLKTFAPADALVMHEEAWNSYPRCKTVS 71 (233)
Q Consensus 8 ~GeGVEvl~NEp~~~~~~g~GqYT~K~y~l~sklP~w~~~~~Pk~~l~v~E~aWNaYPy~~T~~ 71 (233)
.|..|+||..=+. +.+.|+.-.|-..=+-|.- ++.+..-|+++-|| -||+|..
T Consensus 31 ~G~~VtVl~~v~~-----~~~~~kQyF~ET~C~~~~~----~~~gCrGID~rhwn--S~C~tt~ 83 (119)
T 1b8k_A 31 RGHQVTVLGEIKT-----GNSPVKQYFYETRCKEARP----VKNGCRGIDDKHWN--SQCKTSQ 83 (119)
T ss_dssp TSCEEEECSBC-----------CBCCEEEEEECC----------CCTTCCCSSCC--CEEEEEE
T ss_pred CCCEEEEEEEEEc-----CCCceEEEEEEEEeCCCCC----CCCCccCEeccccc--CeeeCcE
Confidence 4677999887554 3345555555555555533 46788999999999 5677754
No 10
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=11.38 E-value=72 Score=24.69 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.1
Q ss_pred CCCHHHHHHHHHHhhh
Q 048074 214 GMTMQQIREIEQQSGS 229 (233)
Q Consensus 214 ~lTmedIR~~E~e~~~ 229 (233)
-|||++|.++|+|...
T Consensus 31 ~~tM~~ieeLQ~Ei~~ 46 (107)
T 2k48_A 31 PFTMSTLQELQENITA 46 (107)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 4799999999988653
Done!