BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048078
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|B Chain B, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|C Chain C, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
pdb|4IQF|D Chain D, Crystal Structure Of Methyionyl-trna Formyltransferase
From Bacillus Anthracis
Length = 317
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 162/324 (50%), Gaps = 25/324 (7%)
Query: 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
+VF G+P SV VL L ++V +VTQP R + + P+PV A G
Sbjct: 7 VVFXGTPDFSVPVLRRLIEDG------YDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHG 60
Query: 112 FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL 171
P + P R E + AL+P+L +TAA+G I+P++ L P G +N+H SLLP
Sbjct: 61 IP---VLQPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASLLPE 117
Query: 172 YRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGS 231
RG AP+ A+ G ++TG+++ + V LDAG ++ + ++E++++ L L G+
Sbjct: 118 LRGGAPIHYAIXEGKEKTGITIXYXVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGA 177
Query: 232 ELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWP 291
LL + +P ++ G +++ Q++ + T A I E+ + + + ++N +R WP
Sbjct: 178 HLLSKTVPLLIQG--KLEPIKQNEEEVTFAYNIKREQEKIDWTKTGEEVYNHIRGLNPWP 235
Query: 292 GTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGIT-FKKDALVVPCGECTALEV 350
+A GQ +K+ P ++ E I ++D VV G T +++
Sbjct: 236 VAYTTLA------GQV----VKVWWGEKVPVTKSAEAGTIVAIEEDGFVVATGNETGVKI 285
Query: 351 LEVQLPGKKAVSAAAFWNGLRGQK 374
E+Q GKK S + F LRG K
Sbjct: 286 TELQPSGKKRXSCSQF---LRGTK 306
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt)
From Coxiella Burnetii
Length = 314
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 159/324 (49%), Gaps = 22/324 (6%)
Query: 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
+VF G+PQ +V L AL DS V A+ TQP RG+K+ SPV + A
Sbjct: 5 IVFAGTPQFAVPTLRALI------DSSHRVLAVYTQPDRPSGRGQKIXESPVKEIARQNE 58
Query: 112 FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL 171
P I P ++ L A ++ + AYG ILP K LN +G VN+H SLLP
Sbjct: 59 IP---IIQPFSLRDEVEQEKLIAXNADVXVVVAYGLILPKKALNAFRLGCVNVHASLLPR 115
Query: 172 YRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGS 231
+RGAAP+QRA+ G +ETG+S+ LD G V+A+ + + A +L L G+
Sbjct: 116 WRGAAPIQRAILAGDRETGISIXQXNEGLDTGDVLAKSACVISSEDTAADLHDRLSLIGA 175
Query: 232 ELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWP 291
+LL+ L + G +K + QD++ AT A KI +E+ + + + AV + +VRAF P
Sbjct: 176 DLLLESLAKLEKGD--IKLEKQDEASATYASKIQKQEALIDWRKSAVEIARQVRAFNPTP 233
Query: 292 GTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVL 351
R + ++V+ K T P + + K + + G L +
Sbjct: 234 IAFTYFEGQPXRIWRATVVDEK---TDFEPGVLVDA------DKKGISIAAGSGI-LRLH 283
Query: 352 EVQLPGKKAVSAAAFWNGLRGQKL 375
++QLPGK+ SA F N G KL
Sbjct: 284 QLQLPGKRVCSAGDFINA-HGDKL 306
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|1FMT|B Chain B, Methionyl-Trnafmet Formyltransferase From Escherichia Coli
pdb|2FMT|A Chain A, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
pdb|2FMT|B Chain B, Methionyl-Trnafmet Formyltransferase Complexed With
Formyl- Methionyl-Trnafmet
Length = 314
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 161/324 (49%), Gaps = 29/324 (8%)
Query: 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
++F G+P + LDAL ++ + V + TQP RG+K++PSPV A ++G
Sbjct: 6 IIFAGTPDFAARHLDALLSSGHN------VVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG 59
Query: 112 FPADLIFTPE--RAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLL 169
P +F P R E+ L + LQ ++ + AYG ILP L +P +G +N+H SLL
Sbjct: 60 LP---VFQPVSLRPQENQQL--VAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLL 114
Query: 170 PLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSE 229
P +RGAAP+QR+L G ETGV++ LD G ++ + + + + L L
Sbjct: 115 PRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAEL 174
Query: 230 GSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAG 289
G + LI L + DG+A K + QD++ T A K++ EE+ + + A L +RAF
Sbjct: 175 GPQGLITTLKQLADGTA--KPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNP 232
Query: 290 WPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFK--KDALVVPCGECTA 347
WP M+ ++ + + +I T TN G + K + V G+
Sbjct: 233 WP-----MSWLEIEGQPVKVWKASVIDT------ATNAAPGTILEANKQGIQVATGDGI- 280
Query: 348 LEVLEVQLPGKKAVSAAAFWNGLR 371
L +L +Q GKKA+SA N R
Sbjct: 281 LNLLSLQPAGKKAMSAQDLLNSRR 304
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae
Length = 318
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 152/310 (49%), Gaps = 21/310 (6%)
Query: 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
+VF G+P + L AL + S E+ A+ TQP RG+K+ SPV AL+
Sbjct: 10 IVFAGTPDFAARHLAALLS------SEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHN 63
Query: 112 FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL 171
P ++ PE D L AL +L + AYG +LP L+ P +G +N+H S+LP
Sbjct: 64 VP---VYQPENFKSDESKQQLAALNADLXVVVAYGLLLPKVVLDTPKLGCINVHGSILPR 120
Query: 172 YRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGS 231
+RGAAP+QR++ G ETGV++ LD G + + ++ + L G
Sbjct: 121 WRGAAPIQRSIWAGDSETGVTIXQXDVGLDTGDXLKIATLPIEASDTSASXYDKLAELGP 180
Query: 232 ELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWP 291
+ L+ L I G+A A QDD A A K++ EE+ +++ + A + +RAF WP
Sbjct: 181 QALLECLQDIAQGTA--VAVKQDDGLANYAHKLSKEEARINWSDAATHIERCIRAFNPWP 238
Query: 292 GTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVL 351
+ ++A + Q+ VE + +T IQ + K + V G+ L +
Sbjct: 239 XSHFEVA-ENSIKVWQARVETRAVTQTPGTIIQAD--------KSGIYVATGQ-DVLVLE 288
Query: 352 EVQLPGKKAV 361
+Q+PGKKA+
Sbjct: 289 SLQIPGKKAL 298
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From
Yersinia Pestis Complexed With L-Methionine
Length = 318
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 158/322 (49%), Gaps = 25/322 (7%)
Query: 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG 111
++F G+P + L AL + S ++ + TQP RG K+ PSPV A G
Sbjct: 10 IIFAGTPDFAARHLGALLS------SQHKIVGVFTQPDRPAGRGNKLTPSPVKILAEHHG 63
Query: 112 FPADLIFTPE--RAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLL 169
P +F P+ R E+ L + L ++ + AYG ILP+ L +P +G +N+H SLL
Sbjct: 64 IP---VFQPKSLRPEENQHL--VADLNADIMVVVAYGLILPAAVLAMPRLGCINVHGSLL 118
Query: 170 PLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSE 229
P +RGAAP+QR++ G ++TG+++ LD G ++ + + + + + L L
Sbjct: 119 PRWRGAAPIQRSVWAGDEKTGITIMQMDIGLDTGAMLHKIECAIQPEDTSATLYDKLAQL 178
Query: 230 GSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAG 289
G + L+ L + G+A A+ Q++++AT A K++ EE+ L + A L +RAF
Sbjct: 179 GPQGLLITLQQLAAGTAL--AEVQNETQATYAEKLSKEEAKLDWTLSATQLERCIRAFNP 236
Query: 290 WPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALE 349
WP +VD++ +K+ +V P + E I + L
Sbjct: 237 WP---VSYFIVDEQ-------PIKVWQAQVLPAGEDAEPGTIIHADKHGIQVATADGVLN 286
Query: 350 VLEVQLPGKKAVSAAAFWNGLR 371
+ ++Q GKKA+SAA N R
Sbjct: 287 ITQLQPAGKKAMSAADLLNSRR 308
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 21/277 (7%)
Query: 79 FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPE 138
+E++AI T + G K VA+ A +RG P ++ P+ ++ + L P+
Sbjct: 24 YEISAIFTHTD---NPGEKAFYGSVARLAAERGIP---VYAPDNVNHPLWVERIAQLSPD 77
Query: 139 LCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVR 198
+ + Y +++ + L + P G N+H SLLP YRG AP+ L G ETGV+L V+
Sbjct: 78 VIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK 137
Query: 199 ALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKA 258
DAG ++A+ ++ + A L L +LL + LP+I G+ AQ +++ A
Sbjct: 138 RADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENE--A 195
Query: 259 TLAPKITTEESWLSFDEEAVVLHNKVRAFAG-WPGTRAKMAVVDDRNGQQSIVELKIITT 317
T + T ++S+L + + A VLHN VRA A WPG + + G Q + + ++
Sbjct: 196 TCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYV-------GNQ---KFTVWSS 245
Query: 318 RVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQ 354
RV P+ + G L++ CG+ ALE++ Q
Sbjct: 246 RVHPHASKAQ-PGSVISVAPLLIACGD-GALEIVTGQ 280
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
pdb|2BLN|B Chain B, N-Terminal Formyltransferase Domain Of Arna In Complex
With N-5-Formyltetrahydrofolate And Ump
Length = 305
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 21/277 (7%)
Query: 79 FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPE 138
+E++AI T + G K VA+ A +RG P ++ P+ ++ + L P+
Sbjct: 24 YEISAIFTH---TDNPGEKAFYGSVARLAAERGIP---VYAPDNVNHPLWVERIAQLSPD 77
Query: 139 LCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVR 198
+ + Y +++ + L + P G N+H SLLP YRG AP+ L G ETGV+L V+
Sbjct: 78 VIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK 137
Query: 199 ALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKA 258
DAG ++A+ ++ + A L L +LL + LP+I G+ AQ +++ A
Sbjct: 138 RADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENE--A 195
Query: 259 TLAPKITTEESWLSFDEEAVVLHNKVRAFAG-WPGTRAKMAVVDDRNGQQSIVELKIITT 317
T + T ++S+L + + A VLHN VRA A WPG + + G Q + + ++
Sbjct: 196 TCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYV-------GNQ---KFTVWSS 245
Query: 318 RVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQ 354
RV P+ + G L++ CG+ ALE++ Q
Sbjct: 246 RVHPHASKAQ-PGSVISVAPLLIACGD-GALEIVTGQ 280
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain
Length = 302
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 21/277 (7%)
Query: 79 FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPE 138
+E++AI T + G K VA+ A +RG P ++ P+ ++ + L P+
Sbjct: 24 YEISAIFTH---TDNPGEKAFYGSVARLAAERGIP---VYAPDNVNHPLWVERIAQLSPD 77
Query: 139 LCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVR 198
+ + Y +++ + L + P G N+H SLLP YRG AP+ L G ETGV+L V+
Sbjct: 78 VIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVK 137
Query: 199 ALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKA 258
DAG ++A+ ++ + A L L +LL + LP+I G+ AQ +++ A
Sbjct: 138 RADAGAIVAQLRIAIAPDDIAITLHHKLCHAARQLLEQTLPAIKHGNILEIAQRENE--A 195
Query: 259 TLAPKITTEESWLSFDEEAVVLHNKVRAFAG-WPGTRAKMAVVDDRNGQQSIVELKIITT 317
T + T ++S+L + + A VLHN VRA A WPG + + G Q + + ++
Sbjct: 196 TCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPGAFSYV-------GNQ---KFTVWSS 245
Query: 318 RVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQ 354
RV P+ + G L++ CG+ ALE++ Q
Sbjct: 246 RVHPHASKAQ-PGSVISVAPLLIACGD-GALEIVTGQ 280
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of
10- Formyltetrahydrofolate Dehydrogenase
Length = 310
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKE 188
++ +AL EL + +P + +N P G++ HPSLLP +RGA+ + L G K+
Sbjct: 70 VAKYQALGAELNVLPFCSQFIPMEVINAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKK 129
Query: 189 TGVSLAFTVRALDAGPVIAREKMEV--DDQIKAPELLVLLFSEGSELLIRELPSILDGSA 246
G ++ + LD G ++ +++ EV DD + + LF EG + +++ + I +G+A
Sbjct: 130 GGFTIFWADDGLDTGDLLLQKECEVLPDDTV-STLYNRFLFPEGIKGMVQAVRLIAEGTA 188
Query: 247 RVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPG 292
PQ + AT E + +++D+ A +HN +R PG
Sbjct: 189 --PRCPQSEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVPG 232
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Brucella Melitensis
Length = 209
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%)
Query: 118 FTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177
F + A EDA L+ L L+P++ A Y +L +F+ +NIHPSLLPL+ G
Sbjct: 68 FASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLFPGLHT 127
Query: 178 VQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDD 215
QRAL G K G ++ +D GP++A+ + V D
Sbjct: 128 HQRALDAGMKLAGCTVHLVTEGMDEGPILAQAAVPVLD 165
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With 6-
Formyltetrahydropterin
Length = 329
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKE 188
++ +AL EL + +P + ++ P G++ HPSLLP +RGA+ + L G K+
Sbjct: 92 VAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKK 151
Query: 189 TGVSLAFTVRALDAGPVIAREKMEV--DDQIKAPELLVLLFSEGSELLIRELPSILDGSA 246
G S+ + LD G ++ +++ EV DD + + LF EG + +++ + I +G A
Sbjct: 152 GGFSIFWADDGLDTGDLLLQKECEVLPDDTV-STLYNRFLFPEGIKGMVQAVRLIAEGKA 210
Query: 247 RVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPG 292
QP++ AT E + +++D+ A +HN +R PG
Sbjct: 211 PRLPQPEEG--ATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVPG 254
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
pdb|3P9X|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Bacillus Halodurans
Length = 211
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 10/139 (7%)
Query: 80 EVAAIVTQPPSRRDRGR-KVLPSPVAQYALD-RGFPADLIFTPERAGEDAFLSNLRALQP 137
EVA ++T P + R KV PV ALD + +P+ + A E + L+ Q
Sbjct: 31 EVALLITDKPGAKVVERVKVHEIPVC--ALDPKTYPS------KEAYEIEVVQQLKEKQI 82
Query: 138 ELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTV 197
+ + A Y ++ L VNIHPSLLP + G +++A++ K TGV++ +
Sbjct: 83 DFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVD 142
Query: 198 RALDAGPVIAREKMEVDDQ 216
+D GP+IA+E + ++++
Sbjct: 143 EGMDTGPIIAQEAVSIEEE 161
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide
Formyltransferase (Purn) In Complex With Ches From
Coxiella Burnetii
Length = 215
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 96 RKVLPSPVAQYALDRG----FPADLIFTPERAGEDAFLSNLR----ALQPELCITAAYGN 147
R V+ + Y L R P +I E F S L+ P+L + A +
Sbjct: 35 RAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFXR 94
Query: 148 ILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIA 207
L F++ +NIHPSLLP Y G +RAL G E GVS+ + LDAGP+I
Sbjct: 95 KLGKAFVSHYSGRXINIHPSLLPKYTGLNTHERALAAGETEHGVSVHYVTEDLDAGPLIC 154
Query: 208 REKMEVDDQIKAPELL 223
+ ++ + Q PE L
Sbjct: 155 QARLSITPQ-DTPETL 169
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
pdb|3GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop
Observed From Low And High Ph Crystal Structures Of
Mutant Monomeric Glycinamide Ribonucleotide
Transformylase
Length = 212
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 15/141 (10%)
Query: 118 FTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177
F A + A + + P++ + A + IL F++ +NIHPSLLP Y G
Sbjct: 61 FDSREAYDRALIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 178 VQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEV-----DDQIKA---------PELL 223
++AL+ G +E G S+ F LD GPVI + K+ V +D I A L+
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 224 VLLFSEGSELLIRELPSILDG 244
+ F++G L + E + LDG
Sbjct: 181 ISWFADG-RLKMHENAAWLDG 200
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|B Chain B, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|C Chain C, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
pdb|3KCQ|D Chain D, Crystal Structure Of Phosphoribosylglycinamide
Formyltransferase From Anaplasma Phagocytophilum
Length = 215
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 132 LRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGV 191
LR +L A + +ILP KF+ +NIHPSLLP ++G ++A + G K G
Sbjct: 78 LREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGC 137
Query: 192 SLAFTVRALDAGPVIAR 208
+L + + LDAGP+I +
Sbjct: 138 TLHYVYQELDAGPIIMQ 154
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GRC|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase From Escherichia Coli At 3.0 Angstroms
Resolution: A Target Enzyme For Chemotherapy
pdb|1GAR|A Chain A, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1GAR|B Chain B, Towards Structure-Based Drug Design: Crystal Structure Of
A Multisubstrate Adduct Complex Of Glycinamide
Ribonucleotide Transformylase At 1.96 Angstroms
Resolution
pdb|1C2T|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C2T|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylase
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1JKX|A Chain A, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|B Chain B, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|C Chain C, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1JKX|D Chain D, Unexpected Formation Of An Epoxide-Derived Multisubstrate
Adduct Inhibitor On The Active Site Of Gar
Transformylase
pdb|1CDE|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|C Chain C, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDE|D Chain D, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 118 FTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177
F A + + + P++ + A + IL F++ +NIHPSLLP Y G
Sbjct: 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 178 VQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEV-----DDQIKA---------PELL 223
++AL+ G +E G S+ F LD GPVI + K+ V +D I A L+
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 224 VLLFSEGSELLIRELPSILDG 244
+ F++G L + E + LDG
Sbjct: 181 ISWFADG-RLKMHENAAWLDG 200
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
pdb|1CDD|B Chain B, Structures Of Apo And Complexed Escherichia Coli
Glycinamide Ribonucleotide Transformylase
Length = 212
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 118 FTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177
F A + + + P++ + A + IL F++ +NIHPSLLP Y G
Sbjct: 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 178 VQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEV-----DDQIKA---------PELL 223
++AL+ G +E G S+ F LD GPVI + K+ V +D I A L+
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 224 VLLFSEGSELLIRELPSILDG 244
+ F++G L + E + LDG
Sbjct: 181 ISWFADG-RLKMHENAAWLDG 200
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
pdb|1C3E|B Chain B, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid
Length = 209
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 118 FTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177
F A + + + P++ + A + IL F++ +NIHPSLLP Y G
Sbjct: 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 178 VQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEV-----DDQIKA---------PELL 223
++AL+ G +E G S+ F LD GPVI + K+ V +D I A L+
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 224 VLLFSEGSELLIRELPSILDG 244
+ F++G L + E + LDG
Sbjct: 181 ISWFADG-RLKMHENAAWLDG 200
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex
Aeolicus
Length = 216
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 118 FTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177
F ++ E+ L+ EL + A + IL FL P +NIHPSL+P ++G
Sbjct: 62 FPSKKEFEERXALELKKKGVELVVLAGFXRILSHNFLKYFPNKVINIHPSLIPAFQGLHA 121
Query: 178 VQRALQGGAKETGVSLAFTVRALDAGPVIAR 208
++A++ G K +G ++ ++DAGPVI +
Sbjct: 122 QKQAVEFGVKFSGCTVHIVDESVDAGPVIVQ 152
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 138 ELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTV 197
EL I A Y +L + +NIH SLLP ++GA P +A G K G + +
Sbjct: 168 ELVILARYXQVLSPELCRRLDGWAINIHHSLLPGFKGAKPYHQAYNKGVKXVGATAHYIN 227
Query: 198 RALDAGPVIAREKMEVDDQIKAPELLV 224
LD GP+IA + +EV D PE L+
Sbjct: 228 NDLDEGPIIA-QGVEVVDHSHYPEDLI 253
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Geobacillus Kaustophilus
Length = 212
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 65 LDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPER-- 122
A+ +A+ D VA +V P G KV+ + A PA +F+P+
Sbjct: 17 FQAIVDAAKRGDLPARVALLVCDRP-----GAKVI-----ERAARENVPA-FVFSPKDYP 65
Query: 123 ---AGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQ 179
A E L L+ Q + A Y ++ L+ VNIHPSLLP + G +
Sbjct: 66 SKAAFESEILRELKGRQIDWIALAGYXRLIGPTLLSAYEGKIVNIHPSLLPAFPGKDAIG 125
Query: 180 RALQGGAKETGVSLAFTVRALDAGPVIAR 208
+A + G ETGV++ + D GPVIA+
Sbjct: 126 QAYRAGVSETGVTVHYVDEGXDTGPVIAQ 154
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%)
Query: 136 QPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAF 195
Q +L + A Y IL +NIH S LP ++GA P +A G K G + F
Sbjct: 165 QADLIVLARYXQILSDDLSAFLSGRCINIHHSFLPGFKGAKPYHQAHTRGVKLIGATAHF 224
Query: 196 TVRALDAGPVIAREKMEVDDQIKAPELL 223
LD GP+IA++ V + A +L+
Sbjct: 225 VTADLDEGPIIAQDVEHVSHRDSAEDLV 252
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 136 QPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAF 195
Q ++ + A Y ILP + +NIH S LP + GA P +A G K G + +
Sbjct: 181 QADVVVLARYXQILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLIGATCHY 240
Query: 196 TVRALDAGPVIAREKMEV 213
LDAGP+I ++ + V
Sbjct: 241 VTEELDAGPIIEQDVVRV 258
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DA8|B Chain B, Crystal Structure Of Purn From Mycobacterium Tuberculosis
pdb|3DCJ|A Chain A, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
pdb|3DCJ|B Chain B, Crystal Structure Of Glycinamide Formyltransferase (Purn)
From Mycobacterium Tuberculosis In Complex With
5-Methyl-5, 6,7,8-Tetrahydrofolic Acid Derivative
Length = 215
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 112 FPADLIFTPERAGED-AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLP 170
F L P R D A + A +P+L ++A + IL +FL+ T+N HP+LLP
Sbjct: 64 FTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLP 123
Query: 171 LYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDD 215
+ G V AL G K TG ++ D GP++A++ + V D
Sbjct: 124 AFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLD 168
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase 1 From Symbiobacterium Toebii
Length = 229
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 120 PERAGEDAFLS-NLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPV 178
P R DA L+ L+A +L A Y ++ L P +NIHPSLLP + G
Sbjct: 84 PSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPGLEAQ 143
Query: 179 QRALQGGAKETGVSLAFTVRALDAGPVI 206
++AL+ G K G ++ F +D GP+I
Sbjct: 144 RQALEHGVKVAGCTVHFVTAGVDEGPII 171
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide
Transformylase
Length = 203
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 86 TQPPSRRDRGRKVLPSPVAQYALDR----GFPADLIFTPERAGEDAFLSNLRALQPELCI 141
T+ P+ + V+ + A LD+ G P +I F S + + E I
Sbjct: 21 TREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI 80
Query: 142 T----AAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTV 197
A + IL F+ +NIHPSLLP ++G+ ++AL+ G TG ++ F
Sbjct: 81 DIVCLAGFXRILSGPFVQKWNGKXLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVA 140
Query: 198 RALDAGPVIAREKMEV 213
+DAG +I +E + V
Sbjct: 141 EDVDAGQIILQEAVPV 156
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 104 AQYALD-RGFPADLIFTPERAGEDA-FLSNLRALQPELCITAAYGNILPSKFLNIPPMGT 161
AQ+ L R FP I +A ++A +L EL I A Y +L +
Sbjct: 140 AQHGLPFRHFP---ITADTKAQQEAQWLDVFETSGAELVILARYXQVLSPEASARLANRA 196
Query: 162 VNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPE 221
+NIH S LP ++GA P +A G K G + F LD GP+I + VD + +
Sbjct: 197 INIHHSFLPGFKGAKPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQ 256
Query: 222 LLVL 225
LL +
Sbjct: 257 LLAV 260
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide
Transformylase In Complex With Alpha,beta-n-
(hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8,
Dideazafolate
Length = 203
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 86 TQPPSRRDRGRKVLPSPVAQYALDR----GFPADLIFTPERAGEDAFLSNLRALQPELCI 141
T+ P+ + V+ + A LD+ G P +I F S + + E I
Sbjct: 21 TREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI 80
Query: 142 T----AAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTV 197
A + IL F+ +NIHPSLLP ++G+ ++AL+ G TG ++ F
Sbjct: 81 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVA 140
Query: 198 RALDAGPVIAREKMEV 213
+DAG +I +E + V
Sbjct: 141 EDVDAGQIILQEAVPV 156
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2
pdb|1NJS|A Chain A, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1NJS|B Chain B, Human Gar Tfase In Complex With Hydrolyzed Form Of 10-
Trifluoroacetyl-5,10-Dideaza-Acyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBM|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBQ|A Chain A, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|B Chain B, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|C Chain C, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBQ|D Chain D, Human Gar Tfase Complex Structure With
10-(Trifluoroacetyl)-
5,10-Dideazaacyclic-5,6,7,8-Tetrahydrofolic Acid
pdb|1RBY|A Chain A, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|B Chain B, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|C Chain C, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBY|D Chain D, Human Gar Tfase Complex Structure With
10-(trifluoroacetyl)-
5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic Acid And
Substrate Beta-gar
pdb|1RBZ|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RBZ|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC0|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|A Chain A, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
pdb|1RC1|B Chain B, Human Gar Tfase Complex Structure With Polyglutamated 10-
(Trifluoroacetyl)-5,10-Dideazaacyclic-5,6,7,8-
Tetrahydrofolic Acid
Length = 209
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 86 TQPPSRRDRGRKVLPSPVAQYALDR----GFPADLIFTPERAGEDAFLSNLRALQPELCI 141
T+ P+ + V+ + A LD+ G P +I F S + + E I
Sbjct: 21 TREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI 80
Query: 142 T----AAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTV 197
A + IL F+ +NIHPSLLP ++G+ ++AL+ G TG ++ F
Sbjct: 81 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVA 140
Query: 198 RALDAGPVIAREKMEV 213
+DAG +I +E + V
Sbjct: 141 EDVDAGQIILQEAVPV 156
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%)
Query: 121 ERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQR 180
R E A + + +L + A Y IL + +NIH S LP ++GA P +
Sbjct: 151 RRQQEAAITALIAQTHTDLVVLARYXQILSDEXSARLAGRCINIHHSFLPGFKGAKPYHQ 210
Query: 181 ALQGGAKETGVSLAFTVRALDAGPVIARE 209
A G K G + + ALD GP+I ++
Sbjct: 211 AFDRGVKLIGATAHYVTSALDEGPIIDQD 239
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|A Chain A, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEJ|C Chain C, Human Glycinamide Ribonucleotide Transformylase Domain At
Ph 8.5
pdb|1MEN|A Chain A, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|B Chain B, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
pdb|1MEN|C Chain C, Complex Structure Of Human Gar Tfase And Substrate
Beta-Gar
Length = 223
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 86 TQPPSRRDRGRKVLPSPVAQYALDR----GFPADLIFTPERAGEDAFLSNLRALQPELCI 141
T+ P+ + V+ + A LD+ G P +I F S + + E I
Sbjct: 32 TREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSI 91
Query: 142 T----AAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTV 197
A + IL F+ +NIHPSLLP ++G+ ++AL+ G TG ++ F
Sbjct: 92 DIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVA 151
Query: 198 RALDAGPVIAREKMEV 213
+DAG +I +E + V
Sbjct: 152 EDVDAGQIILQEAVPV 167
>pdb|1ZGH|A Chain A, Methionyl-Trna Formyltransferase From Clostridium
Thermocellum
Length = 260
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 89/197 (45%), Gaps = 22/197 (11%)
Query: 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKE 188
++ + PE + + I+P + V H + LP RG +P+Q ++ G K+
Sbjct: 70 FEKVKLINPEYILFPHWSWIIPKEIFE--NFTCVVFHXTDLPFGRGGSPLQNLIERGIKK 127
Query: 189 TGVSLAFTVRALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRE-LPSILDGSAR 247
T +S +D G + K ++D A E +F S+++ + +P +L + R
Sbjct: 128 TKISAIKVDGGIDTGDIFF--KRDLDLYGTAEE----IFXRASKIIFNDXIPELL--TKR 179
Query: 248 VKAQPQDDSKATLAPKITTEESWLS--FDEEAVVLHNKV-------RAFAGWPGTRAKMA 298
Q Q + +AT+ + E+S +S FD E + + + RAF + R + +
Sbjct: 180 PVPQKQ-EGEATVFQRRKPEQSEISPDFDLEKIYDYIRXLDGEGYPRAFIKYGKYRLEFS 238
Query: 299 VVDDRNGQQSIVELKII 315
+NG + I +++II
Sbjct: 239 RASXKNG-KIIADVEII 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,102,327
Number of Sequences: 62578
Number of extensions: 393907
Number of successful extensions: 874
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 34
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)