Query 048078
Match_columns 378
No_of_seqs 249 out of 1784
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0223 Fmt Methionyl-tRNA for 100.0 8.8E-81 1.9E-85 596.6 34.0 302 49-372 1-303 (307)
2 PLN02285 methionyl-tRNA formyl 100.0 3.3E-76 7.2E-81 578.5 38.7 330 46-375 3-334 (334)
3 TIGR00460 fmt methionyl-tRNA f 100.0 6.3E-73 1.4E-77 551.9 36.9 303 50-374 1-306 (313)
4 PRK00005 fmt methionyl-tRNA fo 100.0 4.4E-72 9.6E-77 545.4 37.0 301 50-372 1-302 (309)
5 PRK06988 putative formyltransf 100.0 4.3E-70 9.3E-75 531.5 36.5 300 49-373 2-309 (312)
6 PRK08125 bifunctional UDP-gluc 100.0 1.3E-65 2.9E-70 546.2 36.4 297 50-372 1-298 (660)
7 PRK07579 hypothetical protein; 100.0 1.2E-47 2.6E-52 357.7 24.9 222 49-298 1-226 (245)
8 PLN02828 formyltetrahydrofolat 100.0 2.9E-44 6.4E-49 340.0 23.9 235 1-246 2-257 (268)
9 KOG3082 Methionyl-tRNA formylt 100.0 2.2E-45 4.7E-50 343.2 9.8 310 47-373 4-321 (338)
10 TIGR00655 PurU formyltetrahydr 100.0 4.5E-43 9.8E-48 335.7 20.5 232 1-246 18-270 (280)
11 PRK06027 purU formyltetrahydro 100.0 3E-43 6.5E-48 338.5 18.5 231 2-246 25-275 (286)
12 PRK13011 formyltetrahydrofolat 100.0 7.1E-43 1.5E-47 335.5 19.2 230 1-246 25-275 (286)
13 PRK13010 purU formyltetrahydro 100.0 2.3E-42 5.1E-47 331.9 20.5 232 1-246 27-279 (289)
14 TIGR00639 PurN phosphoribosylg 100.0 1.4E-41 3E-46 308.6 22.4 184 50-246 1-189 (190)
15 PRK05647 purN phosphoribosylgl 100.0 5.4E-41 1.2E-45 307.3 21.0 184 50-246 2-190 (200)
16 PLN02331 phosphoribosylglycina 100.0 2.4E-40 5.2E-45 303.7 21.7 184 51-246 1-193 (207)
17 PF00551 Formyl_trans_N: Formy 100.0 2.7E-41 5.9E-46 305.1 10.1 175 50-238 1-181 (181)
18 COG0299 PurN Folate-dependent 100.0 4.7E-39 1E-43 286.4 18.6 184 50-246 1-189 (200)
19 KOG2452 Formyltetrahydrofolate 100.0 1.7E-38 3.7E-43 310.3 18.1 294 50-372 1-311 (881)
20 KOG3076 5'-phosphoribosylglyci 100.0 2.2E-34 4.8E-39 253.0 18.8 188 47-246 4-197 (206)
21 COG0788 PurU Formyltetrahydrof 100.0 3.3E-31 7.1E-36 244.8 17.0 231 1-245 25-275 (287)
22 PF02911 Formyl_trans_C: Formy 99.9 3.8E-23 8.3E-28 168.5 9.7 98 263-371 1-100 (100)
23 PF01408 GFO_IDH_MocA: Oxidore 95.6 0.039 8.5E-07 45.4 6.5 71 50-145 1-71 (120)
24 PRK08300 acetaldehyde dehydrog 91.9 0.46 1E-05 46.4 6.8 74 48-145 3-79 (302)
25 TIGR01761 thiaz-red thiazoliny 91.7 0.35 7.6E-06 48.2 6.0 50 48-113 2-51 (343)
26 TIGR01921 DAP-DH diaminopimela 91.2 0.86 1.9E-05 45.0 8.0 36 49-89 3-38 (324)
27 TIGR03215 ac_ald_DH_ac acetald 90.1 1 2.2E-05 43.8 7.3 74 49-146 1-74 (285)
28 KOG2741 Dimeric dihydrodiol de 87.8 1.6 3.5E-05 43.2 7.0 76 46-142 3-78 (351)
29 PF03807 F420_oxidored: NADP o 86.9 1.4 3.1E-05 34.6 5.1 76 51-151 1-76 (96)
30 PF00185 OTCace: Aspartate/orn 85.5 5.8 0.00013 34.9 8.7 101 49-174 2-125 (158)
31 TIGR01861 ANFD nitrogenase iro 85.4 4.8 0.0001 42.3 9.4 115 49-184 328-445 (513)
32 COG0673 MviM Predicted dehydro 84.6 3 6.5E-05 40.6 7.2 72 48-144 2-75 (342)
33 PLN02342 ornithine carbamoyltr 83.5 13 0.00028 37.2 11.1 104 47-175 192-313 (348)
34 PLN02696 1-deoxy-D-xylulose-5- 81.6 6.3 0.00014 40.7 8.2 135 47-208 55-193 (454)
35 COG0569 TrkA K+ transport syst 81.5 3.1 6.8E-05 38.8 5.6 73 50-144 1-74 (225)
36 CHL00073 chlN photochlorophyll 80.9 14 0.00031 38.3 10.5 124 49-183 314-437 (457)
37 cd01965 Nitrogenase_MoFe_beta_ 80.8 4.5 9.7E-05 41.4 6.9 121 48-184 298-425 (428)
38 PF00289 CPSase_L_chain: Carba 80.4 2.3 4.9E-05 35.3 3.8 75 50-146 3-83 (110)
39 PRK13304 L-aspartate dehydroge 80.4 3 6.5E-05 39.8 5.2 77 49-152 1-77 (265)
40 PF02254 TrkA_N: TrkA-N domain 80.2 6.1 0.00013 32.0 6.4 70 52-144 1-70 (116)
41 TIGR01284 alt_nitrog_alph nitr 79.6 11 0.00024 39.0 9.4 115 49-184 325-442 (457)
42 COG2910 Putative NADH-flavin r 79.1 5.8 0.00013 36.2 6.2 35 50-90 1-36 (211)
43 PRK05447 1-deoxy-D-xylulose 5- 79.0 7.8 0.00017 39.2 7.8 111 50-186 2-116 (385)
44 TIGR03022 WbaP_sugtrans Undeca 78.2 31 0.00067 35.4 12.2 118 49-170 125-252 (456)
45 TIGR03693 ocin_ThiF_like putat 78.0 9.1 0.0002 41.0 8.2 99 37-149 117-217 (637)
46 TIGR01282 nifD nitrogenase mol 77.9 16 0.00035 38.0 10.0 115 49-185 335-453 (466)
47 TIGR00289 conserved hypothetic 77.8 13 0.00029 34.7 8.5 87 50-142 1-91 (222)
48 PRK13302 putative L-aspartate 77.6 9.6 0.00021 36.5 7.7 75 47-147 4-78 (271)
49 cd01075 NAD_bind_Leu_Phe_Val_D 77.5 9.6 0.00021 34.8 7.4 152 48-241 27-179 (200)
50 cd01977 Nitrogenase_VFe_alpha 76.4 15 0.00033 37.3 9.3 115 48-184 287-405 (415)
51 TIGR00715 precor6x_red precorr 76.2 7.7 0.00017 37.0 6.6 73 50-145 1-74 (256)
52 cd01976 Nitrogenase_MoFe_alpha 75.3 22 0.00049 36.3 10.1 113 48-182 299-415 (421)
53 cd01968 Nitrogenase_NifE_I Nit 74.7 19 0.00041 36.5 9.4 114 49-184 287-403 (410)
54 TIGR00290 MJ0570_dom MJ0570-re 74.5 15 0.00032 34.5 7.8 87 50-142 1-91 (223)
55 PRK13376 pyrB bifunctional asp 74.5 19 0.00041 38.0 9.4 28 146-175 272-299 (525)
56 COG0482 TrmU Predicted tRNA(5- 74.4 14 0.0003 37.0 8.0 98 48-151 2-131 (356)
57 PRK04284 ornithine carbamoyltr 74.3 25 0.00055 34.9 9.9 102 48-175 154-280 (332)
58 PRK02255 putrescine carbamoylt 74.3 31 0.00066 34.4 10.5 26 147-174 252-277 (338)
59 PF13460 NAD_binding_10: NADH( 74.2 7.6 0.00017 33.9 5.7 67 52-144 1-68 (183)
60 TIGR01862 N2-ase-Ialpha nitrog 74.1 20 0.00042 37.0 9.4 115 49-184 317-434 (443)
61 TIGR01279 DPOR_bchN light-inde 73.8 19 0.00042 36.6 9.2 113 48-183 273-389 (407)
62 PF01113 DapB_N: Dihydrodipico 73.6 10 0.00022 31.8 5.9 35 50-89 1-36 (124)
63 PF05368 NmrA: NmrA-like famil 73.5 10 0.00023 34.7 6.6 72 52-145 1-73 (233)
64 PRK00779 ornithine carbamoyltr 73.1 37 0.0008 33.2 10.6 104 47-175 150-271 (304)
65 cd03466 Nitrogenase_NifN_2 Nit 73.1 13 0.00028 38.1 7.7 118 48-184 299-426 (429)
66 cd01974 Nitrogenase_MoFe_beta 72.1 9.4 0.0002 39.2 6.5 121 48-184 302-431 (435)
67 PRK10124 putative UDP-glucose 71.3 50 0.0011 34.2 11.7 118 49-171 143-267 (463)
68 COG4693 PchG Oxidoreductase (N 71.3 7.7 0.00017 37.6 5.1 49 49-113 4-52 (361)
69 PRK11579 putative oxidoreducta 71.2 15 0.00032 36.2 7.5 34 49-87 4-38 (346)
70 TIGR01860 VNFD nitrogenase van 70.9 23 0.00051 36.7 9.1 115 49-184 327-444 (461)
71 PRK13365 protocatechuate 4,5-d 70.7 8 0.00017 37.4 5.3 78 126-205 38-128 (279)
72 TIGR01283 nifE nitrogenase mol 70.7 34 0.00073 35.4 10.2 111 49-183 326-441 (456)
73 COG0345 ProC Pyrroline-5-carbo 70.7 14 0.00031 35.5 6.9 51 49-113 1-51 (266)
74 PF01902 ATP_bind_4: ATP-bindi 70.6 7 0.00015 36.4 4.7 93 50-151 1-97 (218)
75 TIGR03023 WcaJ_sugtrans Undeca 69.9 31 0.00068 35.3 9.8 39 49-90 128-166 (451)
76 PRK10624 L-1,2-propanediol oxi 69.7 24 0.00053 35.4 8.8 87 51-150 10-101 (382)
77 PRK05472 redox-sensing transcr 69.3 32 0.00069 31.5 8.8 101 48-173 83-186 (213)
78 PLN02852 ferredoxin-NADP+ redu 69.1 15 0.00033 38.4 7.3 61 25-93 5-65 (491)
79 PF02670 DXP_reductoisom: 1-de 68.9 12 0.00025 32.1 5.3 113 52-186 1-115 (129)
80 PF10686 DUF2493: Protein of u 68.8 16 0.00036 27.7 5.6 54 49-115 3-61 (71)
81 TIGR03025 EPS_sugtrans exopoly 68.8 36 0.00078 34.8 9.9 73 48-144 124-196 (445)
82 PRK07634 pyrroline-5-carboxyla 68.5 23 0.0005 32.8 7.8 24 48-71 3-26 (245)
83 cd01076 NAD_bind_1_Glu_DH NAD( 68.2 30 0.00065 32.3 8.4 172 47-241 29-206 (227)
84 PRK08462 biotin carboxylase; V 67.9 12 0.00027 38.2 6.3 36 49-90 4-39 (445)
85 TIGR01286 nifK nitrogenase mol 67.2 13 0.00028 39.2 6.3 120 49-184 363-491 (515)
86 TIGR02015 BchY chlorophyllide 67.1 25 0.00055 36.0 8.4 113 50-180 286-399 (422)
87 PRK01713 ornithine carbamoyltr 66.9 39 0.00084 33.6 9.4 102 48-175 155-281 (334)
88 PRK14478 nitrogenase molybdenu 66.7 31 0.00068 35.9 9.1 112 49-182 324-438 (475)
89 PRK06270 homoserine dehydrogen 66.4 21 0.00045 35.5 7.4 91 49-146 2-99 (341)
90 cd00316 Oxidoreductase_nitroge 66.1 43 0.00093 33.4 9.7 115 48-184 278-396 (399)
91 smart00859 Semialdhyde_dh Semi 65.5 18 0.00039 29.7 5.8 94 51-167 1-99 (122)
92 TIGR00658 orni_carb_tr ornithi 65.5 64 0.0014 31.5 10.5 103 47-174 146-269 (304)
93 PRK10206 putative oxidoreducta 65.5 14 0.00031 36.5 6.0 71 49-144 1-72 (344)
94 PF02844 GARS_N: Phosphoribosy 65.2 8.2 0.00018 31.5 3.5 21 50-70 1-21 (100)
95 TIGR00670 asp_carb_tr aspartat 64.0 48 0.001 32.4 9.3 97 48-168 149-264 (301)
96 cd01967 Nitrogenase_MoFe_alpha 64.0 31 0.00067 34.8 8.3 112 49-184 286-402 (406)
97 PF10727 Rossmann-like: Rossma 63.7 8 0.00017 32.9 3.3 37 46-88 7-43 (127)
98 PRK13303 L-aspartate dehydroge 63.6 24 0.00052 33.7 7.0 33 49-86 1-33 (265)
99 PRK02842 light-independent pro 62.4 55 0.0012 33.5 9.8 116 49-182 290-405 (427)
100 CHL00194 ycf39 Ycf39; Provisio 62.4 26 0.00056 33.9 7.1 30 50-85 1-31 (317)
101 PRK09288 purT phosphoribosylgl 62.3 40 0.00087 33.6 8.7 72 48-143 11-82 (395)
102 PLN02819 lysine-ketoglutarate 61.8 26 0.00056 40.1 7.8 25 47-71 567-591 (1042)
103 KOG0685 Flavin-containing amin 61.7 23 0.00049 36.8 6.6 95 44-158 16-128 (498)
104 cd01972 Nitrogenase_VnfE_like 61.6 51 0.0011 33.6 9.4 117 49-179 293-417 (426)
105 COG0027 PurT Formate-dependent 61.4 38 0.00083 33.5 7.8 70 49-142 12-81 (394)
106 cd07364 PCA_45_Dioxygenase_B S 61.3 15 0.00033 35.5 5.2 77 127-204 39-127 (277)
107 PRK02910 light-independent pro 61.2 39 0.00085 35.6 8.6 116 49-184 293-417 (519)
108 PRK09496 trkA potassium transp 59.4 19 0.00042 36.6 5.9 29 50-84 1-29 (453)
109 PRK12833 acetyl-CoA carboxylas 59.1 29 0.00064 35.9 7.2 36 49-90 5-40 (467)
110 COG1454 EutG Alcohol dehydroge 58.7 32 0.0007 34.8 7.1 88 50-149 7-99 (377)
111 PRK13530 arsenate reductase; P 58.6 1.1E+02 0.0023 26.0 9.4 80 48-144 2-82 (133)
112 PRK14805 ornithine carbamoyltr 58.6 98 0.0021 30.3 10.4 100 48-174 146-266 (302)
113 PRK13366 protocatechuate 4,5-d 58.0 17 0.00037 35.3 4.9 78 127-205 39-128 (284)
114 cd01994 Alpha_ANH_like_IV This 57.5 64 0.0014 29.3 8.4 65 78-142 23-94 (194)
115 cd06533 Glyco_transf_WecG_TagA 57.4 30 0.00066 30.7 6.1 18 126-143 89-106 (171)
116 PF03808 Glyco_tran_WecB: Glyc 57.0 28 0.00061 30.9 5.8 18 125-142 90-107 (172)
117 PLN02688 pyrroline-5-carboxyla 56.8 30 0.00065 32.5 6.3 22 50-71 1-22 (266)
118 PLN00141 Tic62-NAD(P)-related 56.4 38 0.00083 31.3 6.9 39 41-85 9-48 (251)
119 PRK08463 acetyl-CoA carboxylas 56.4 31 0.00068 35.8 6.9 36 49-90 2-37 (478)
120 TIGR02931 anfK_nitrog Fe-only 56.0 53 0.0012 34.0 8.5 117 49-182 312-440 (461)
121 cd07950 Gallate_Doxase_N The N 56.0 22 0.00047 34.3 5.3 78 127-205 39-128 (277)
122 PRK14477 bifunctional nitrogen 55.9 51 0.0011 37.3 8.9 114 48-183 319-435 (917)
123 PRK06849 hypothetical protein; 55.8 61 0.0013 32.4 8.7 35 48-88 3-38 (389)
124 PLN02712 arogenate dehydrogena 55.8 58 0.0013 35.5 9.0 32 46-83 49-80 (667)
125 PRK09536 btuD corrinoid ABC tr 55.7 71 0.0015 32.5 9.2 79 49-145 267-347 (402)
126 PRK03659 glutathione-regulated 55.1 24 0.00052 37.8 5.9 73 49-144 400-472 (601)
127 PLN02256 arogenate dehydrogena 54.4 51 0.0011 32.2 7.6 33 45-83 32-64 (304)
128 PLN02657 3,8-divinyl protochlo 54.1 77 0.0017 31.9 9.2 34 47-86 58-92 (390)
129 PRK09496 trkA potassium transp 54.1 37 0.00081 34.4 7.0 74 48-143 230-304 (453)
130 TIGR01285 nifN nitrogenase mol 54.1 39 0.00084 34.7 7.0 110 49-184 311-427 (432)
131 PRK08306 dipicolinate synthase 54.0 63 0.0014 31.3 8.2 86 48-162 151-236 (296)
132 PRK06111 acetyl-CoA carboxylas 53.9 20 0.00043 36.6 4.9 35 49-89 2-36 (450)
133 cd01973 Nitrogenase_VFe_beta_l 53.7 66 0.0014 33.3 8.7 121 49-183 305-434 (454)
134 COG2102 Predicted ATPases of P 53.2 62 0.0014 30.3 7.5 89 50-144 1-94 (223)
135 cd01979 Pchlide_reductase_N Pc 52.9 94 0.002 31.4 9.6 115 49-184 276-392 (396)
136 TIGR00243 Dxr 1-deoxy-D-xylulo 52.9 55 0.0012 33.2 7.6 132 50-208 2-137 (389)
137 PF01118 Semialdhyde_dh: Semia 52.6 23 0.0005 29.3 4.3 34 51-89 1-35 (121)
138 PRK05479 ketol-acid reductoiso 52.6 65 0.0014 32.0 8.1 29 49-83 17-45 (330)
139 PRK04207 glyceraldehyde-3-phos 52.5 52 0.0011 32.7 7.5 33 49-86 1-33 (341)
140 cd01971 Nitrogenase_VnfN_like 52.4 67 0.0014 32.8 8.4 119 49-184 293-424 (427)
141 KOG3023 Glutamate-cysteine lig 52.0 37 0.00081 32.3 5.8 78 48-140 167-250 (285)
142 COG0373 HemA Glutamyl-tRNA red 52.0 61 0.0013 33.2 7.9 81 48-155 177-259 (414)
143 PLN02958 diacylglycerol kinase 51.5 25 0.00054 36.7 5.2 70 82-151 114-183 (481)
144 PRK00048 dihydrodipicolinate r 51.1 63 0.0014 30.6 7.5 35 49-88 1-36 (257)
145 cd01980 Chlide_reductase_Y Chl 50.9 53 0.0012 33.5 7.4 111 51-179 282-393 (416)
146 COG4569 MhpF Acetaldehyde dehy 50.9 42 0.00092 31.2 5.9 53 48-114 3-55 (310)
147 PRK07679 pyrroline-5-carboxyla 50.8 48 0.001 31.6 6.7 23 49-71 3-25 (279)
148 PRK13789 phosphoribosylamine-- 50.6 43 0.00092 34.3 6.7 24 48-71 3-26 (426)
149 PRK10675 UDP-galactose-4-epime 50.4 1E+02 0.0022 29.7 9.0 29 50-84 1-30 (338)
150 PLN02712 arogenate dehydrogena 50.0 57 0.0012 35.6 7.8 35 42-82 362-396 (667)
151 COG1778 Low specificity phosph 49.8 39 0.00084 30.1 5.3 58 62-138 41-98 (170)
152 PF03054 tRNA_Me_trans: tRNA m 49.7 16 0.00035 36.7 3.3 98 50-152 1-132 (356)
153 PRK07178 pyruvate carboxylase 49.6 56 0.0012 33.8 7.5 35 50-90 3-37 (472)
154 PRK11880 pyrroline-5-carboxyla 49.4 87 0.0019 29.3 8.2 23 49-71 2-24 (267)
155 TIGR00036 dapB dihydrodipicoli 49.1 62 0.0013 30.9 7.2 34 50-88 2-36 (266)
156 PRK00856 pyrB aspartate carbam 48.9 56 0.0012 32.0 6.9 27 146-174 241-267 (305)
157 KOG3857 Alcohol dehydrogenase, 48.8 1.2E+02 0.0025 30.6 8.9 188 46-243 36-250 (465)
158 PRK10669 putative cation:proto 48.8 36 0.00079 36.0 6.0 72 49-143 417-488 (558)
159 TIGR00696 wecB_tagA_cpsF bacte 48.6 36 0.00077 30.6 5.1 21 125-146 89-109 (177)
160 PRK00436 argC N-acetyl-gamma-g 48.4 44 0.00096 33.1 6.2 34 49-87 2-36 (343)
161 TIGR01142 purT phosphoribosylg 48.0 55 0.0012 32.4 6.9 33 51-89 1-33 (380)
162 PRK00726 murG undecaprenyldiph 47.0 79 0.0017 30.7 7.8 18 129-146 84-101 (357)
163 KOG2805 tRNA (5-methylaminomet 46.4 62 0.0013 32.0 6.5 66 47-117 3-73 (377)
164 PF13727 CoA_binding_3: CoA-bi 46.2 65 0.0014 27.5 6.3 87 51-141 79-173 (175)
165 cd01987 USP_OKCHK USP domain i 45.9 64 0.0014 26.0 5.9 44 102-147 53-96 (124)
166 cd01988 Na_H_Antiporter_C The 45.9 62 0.0014 26.0 5.9 45 102-146 60-104 (132)
167 PRK12742 oxidoreductase; Provi 45.9 1.2E+02 0.0026 27.2 8.4 76 49-144 6-83 (237)
168 PRK03515 ornithine carbamoyltr 45.8 2.1E+02 0.0045 28.5 10.4 27 147-175 254-281 (336)
169 PF04007 DUF354: Protein of un 45.8 1.1E+02 0.0024 30.4 8.5 81 50-144 1-91 (335)
170 TIGR00877 purD phosphoribosyla 45.8 76 0.0017 32.0 7.7 21 50-70 1-21 (423)
171 TIGR03590 PseG pseudaminic aci 45.7 93 0.002 29.7 7.9 57 78-145 31-89 (279)
172 cd05211 NAD_bind_Glu_Leu_Phe_V 45.7 82 0.0018 29.2 7.2 168 48-240 22-196 (217)
173 PRK06395 phosphoribosylamine-- 45.6 73 0.0016 32.7 7.5 32 49-86 2-33 (435)
174 COG1748 LYS9 Saccharopine dehy 45.2 69 0.0015 32.6 7.0 121 49-203 1-128 (389)
175 PRK05884 short chain dehydroge 44.7 1E+02 0.0022 28.0 7.6 72 50-143 1-76 (223)
176 TIGR03013 EpsB_2 sugar transfe 44.7 1.6E+02 0.0036 30.1 9.9 37 49-88 124-160 (442)
177 cd05213 NAD_bind_Glutamyl_tRNA 44.7 69 0.0015 31.2 6.9 71 48-145 177-247 (311)
178 PRK06476 pyrroline-5-carboxyla 44.6 67 0.0015 30.1 6.6 22 50-71 1-22 (258)
179 PRK13367 protocatechuate 4,5-d 44.0 37 0.00081 34.8 4.9 79 127-206 39-129 (420)
180 PLN02735 carbamoyl-phosphate s 43.8 55 0.0012 37.9 6.8 40 46-91 571-621 (1102)
181 PRK08192 aspartate carbamoyltr 43.7 1.6E+02 0.0034 29.4 9.2 103 48-174 158-279 (338)
182 PRK05784 phosphoribosylamine-- 43.4 73 0.0016 33.3 7.1 33 50-86 1-33 (486)
183 PRK03562 glutathione-regulated 43.4 51 0.0011 35.6 6.2 73 49-144 400-472 (621)
184 PRK07417 arogenate dehydrogena 43.3 76 0.0016 30.2 6.8 30 50-85 1-30 (279)
185 TIGR02853 spore_dpaA dipicolin 43.2 1.9E+02 0.004 28.0 9.5 105 49-185 151-255 (287)
186 TIGR00514 accC acetyl-CoA carb 43.0 35 0.00077 34.9 4.8 35 49-89 2-36 (449)
187 PLN02477 glutamate dehydrogena 42.9 76 0.0016 32.5 7.0 170 48-240 205-380 (410)
188 PF01370 Epimerase: NAD depend 42.9 81 0.0017 28.2 6.7 74 52-146 1-75 (236)
189 TIGR01278 DPOR_BchB light-inde 42.9 49 0.0011 34.7 5.9 117 49-184 295-419 (511)
190 COG3804 Uncharacterized conser 42.8 49 0.0011 32.3 5.2 41 49-94 2-42 (350)
191 cd01981 Pchlide_reductase_B Pc 42.6 1.5E+02 0.0032 30.2 9.2 114 49-184 301-425 (430)
192 PF04321 RmlD_sub_bind: RmlD s 42.5 76 0.0016 30.4 6.7 21 125-145 40-60 (286)
193 TIGR01133 murG undecaprenyldip 42.4 97 0.0021 29.7 7.5 18 128-145 82-99 (348)
194 PLN02527 aspartate carbamoyltr 42.2 1.9E+02 0.004 28.4 9.4 104 47-174 149-269 (306)
195 PRK12491 pyrroline-5-carboxyla 42.1 88 0.0019 29.9 7.1 23 49-71 2-24 (272)
196 PRK11199 tyrA bifunctional cho 41.7 92 0.002 31.3 7.4 105 48-172 97-204 (374)
197 PRK08591 acetyl-CoA carboxylas 41.5 46 0.001 34.0 5.3 35 49-89 2-36 (451)
198 TIGR02932 vnfK_nitrog V-contai 41.1 1E+02 0.0022 31.9 7.8 121 49-184 309-438 (457)
199 cd01989 STK_N The N-terminal d 41.1 1E+02 0.0022 25.6 6.6 42 106-147 73-114 (146)
200 TIGR03316 ygeW probable carbam 41.0 3.3E+02 0.0072 27.3 11.1 27 147-175 292-320 (357)
201 PRK00045 hemA glutamyl-tRNA re 41.0 1.2E+02 0.0026 31.0 8.2 81 47-154 180-262 (423)
202 KOG2495 NADH-dehydrogenase (ub 40.7 31 0.00068 35.5 3.8 65 44-115 50-125 (491)
203 PRK15454 ethanol dehydrogenase 40.5 89 0.0019 31.7 7.1 86 53-150 30-120 (395)
204 COG2403 Predicted GTPase [Gene 40.4 76 0.0017 32.2 6.3 83 48-142 5-88 (449)
205 PF01488 Shikimate_DH: Shikima 40.4 43 0.00094 28.3 4.2 87 47-158 10-99 (135)
206 TIGR00518 alaDH alanine dehydr 40.3 1.7E+02 0.0036 29.4 9.0 89 48-160 166-260 (370)
207 cd02008 TPP_IOR_alpha Thiamine 40.1 1.1E+02 0.0024 27.0 7.0 91 49-142 70-174 (178)
208 TIGR00236 wecB UDP-N-acetylglu 40.1 2.2E+02 0.0047 27.8 9.7 107 50-168 1-120 (365)
209 PRK12826 3-ketoacyl-(acyl-carr 40.1 1.3E+02 0.0027 27.2 7.6 33 49-87 6-39 (251)
210 PRK08654 pyruvate carboxylase 40.0 56 0.0012 34.2 5.7 35 50-90 3-37 (499)
211 PRK08374 homoserine dehydrogen 39.9 1.1E+02 0.0024 30.3 7.5 93 49-144 2-99 (336)
212 PRK09599 6-phosphogluconate de 39.9 97 0.0021 29.9 7.0 22 50-71 1-22 (301)
213 PRK14664 tRNA-specific 2-thiou 39.8 1.2E+02 0.0026 30.5 7.8 89 49-149 5-121 (362)
214 PRK10538 malonic semialdehyde 39.7 1.2E+02 0.0025 27.8 7.3 30 50-85 1-31 (248)
215 COG1149 MinD superfamily P-loo 39.7 1.1E+02 0.0024 29.7 7.1 94 50-155 164-258 (284)
216 cd01065 NAD_bind_Shikimate_DH 39.6 87 0.0019 26.4 6.0 23 49-71 19-41 (155)
217 PRK02102 ornithine carbamoyltr 39.1 3.2E+02 0.007 27.1 10.6 99 48-168 154-274 (331)
218 COG4607 CeuA ABC-type enteroch 38.6 92 0.002 30.6 6.4 72 46-144 55-126 (320)
219 PRK13363 protocatechuate 4,5-d 38.5 57 0.0012 32.5 5.2 76 127-203 79-187 (335)
220 COG1066 Sms Predicted ATP-depe 38.5 1.5E+02 0.0031 30.7 8.0 99 101-211 133-235 (456)
221 PRK12562 ornithine carbamoyltr 38.4 1.9E+02 0.0042 28.7 8.9 104 49-174 156-280 (334)
222 PRK12429 3-hydroxybutyrate deh 37.9 1.6E+02 0.0035 26.7 8.0 30 50-85 5-35 (258)
223 PRK04523 N-acetylornithine car 37.9 1.6E+02 0.0034 29.3 8.2 25 147-174 275-299 (335)
224 PF00070 Pyr_redox: Pyridine n 37.9 68 0.0015 24.1 4.6 56 51-113 1-56 (80)
225 TIGR01369 CPSaseII_lrg carbamo 37.9 1E+02 0.0023 35.4 7.8 38 47-90 552-600 (1050)
226 TIGR02689 ars_reduc_gluta arse 37.7 1.2E+02 0.0025 25.3 6.4 78 50-144 1-79 (126)
227 PF00448 SRP54: SRP54-type pro 37.5 75 0.0016 28.9 5.5 89 50-149 2-96 (196)
228 PRK07680 late competence prote 37.3 97 0.0021 29.3 6.5 22 50-71 1-22 (273)
229 PRK12490 6-phosphogluconate de 37.2 92 0.002 30.0 6.4 27 50-82 1-27 (299)
230 PLN02735 carbamoyl-phosphate s 36.9 1.2E+02 0.0025 35.3 8.0 36 48-89 22-68 (1102)
231 cd07368 PhnC_Bs_like PhnC is a 36.7 50 0.0011 31.8 4.4 78 126-204 36-124 (277)
232 cd05312 NAD_bind_1_malic_enz N 36.2 1.7E+02 0.0038 28.3 8.0 97 49-157 25-127 (279)
233 PF03721 UDPG_MGDP_dh_N: UDP-g 36.1 56 0.0012 29.4 4.4 33 50-88 1-33 (185)
234 PRK08291 ectoine utilization p 36.1 3.1E+02 0.0067 26.9 10.0 103 48-178 131-239 (330)
235 cd06346 PBP1_ABC_ligand_bindin 35.7 2.5E+02 0.0053 26.7 9.1 65 79-147 137-203 (312)
236 PRK00143 mnmA tRNA-specific 2- 35.5 1.5E+02 0.0032 29.6 7.6 63 50-117 1-69 (346)
237 KOG1502 Flavonol reductase/cin 35.4 75 0.0016 31.6 5.4 128 48-210 5-150 (327)
238 PRK12921 2-dehydropantoate 2-r 35.3 52 0.0011 31.4 4.3 30 50-85 1-30 (305)
239 cd08176 LPO Lactadehyde:propan 35.2 96 0.0021 31.0 6.4 88 49-149 6-98 (377)
240 PRK06545 prephenate dehydrogen 35.1 1.4E+02 0.003 29.7 7.4 22 50-71 1-22 (359)
241 PRK07206 hypothetical protein; 35.1 1.8E+02 0.004 29.1 8.5 35 49-89 2-36 (416)
242 PRK11064 wecC UDP-N-acetyl-D-m 34.8 1.1E+02 0.0024 31.2 6.7 31 49-85 3-33 (415)
243 PRK06718 precorrin-2 dehydroge 34.8 1E+02 0.0022 28.1 5.9 79 49-154 10-88 (202)
244 TIGR02855 spore_yabG sporulati 34.6 49 0.0011 31.9 3.9 46 105-150 122-167 (283)
245 PRK06522 2-dehydropantoate 2-r 34.6 76 0.0016 30.2 5.3 30 50-85 1-30 (304)
246 PRK13940 glutamyl-tRNA reducta 34.4 1.5E+02 0.0032 30.4 7.6 71 48-145 180-251 (414)
247 CHL00076 chlB photochlorophyll 34.4 1.7E+02 0.0037 30.8 8.3 117 49-184 305-429 (513)
248 PRK05653 fabG 3-ketoacyl-(acyl 34.4 2.4E+02 0.0052 25.1 8.5 31 49-85 5-36 (246)
249 PRK13364 protocatechuate 4,5-d 34.2 55 0.0012 31.6 4.2 78 126-204 38-127 (278)
250 COG0289 DapB Dihydrodipicolina 34.2 2.4E+02 0.0052 27.2 8.4 37 49-90 2-39 (266)
251 TIGR01181 dTDP_gluc_dehyt dTDP 34.1 1.3E+02 0.0029 28.1 7.0 81 51-145 1-82 (317)
252 PRK05562 precorrin-2 dehydroge 34.1 1.2E+02 0.0026 28.3 6.4 85 46-157 22-106 (223)
253 PF10087 DUF2325: Uncharacteri 34.1 2.1E+02 0.0045 22.6 7.0 31 101-134 65-95 (97)
254 PRK14804 ornithine carbamoyltr 34.1 3.3E+02 0.0072 26.7 9.8 26 146-175 251-276 (311)
255 PLN02253 xanthoxin dehydrogena 34.0 2.2E+02 0.0048 26.4 8.4 30 49-84 18-48 (280)
256 TIGR02014 BchZ chlorophyllide 33.9 1.3E+02 0.0029 31.3 7.3 101 48-184 279-388 (468)
257 PRK13814 pyrB aspartate carbam 33.6 1.5E+02 0.0032 29.1 7.2 27 147-175 244-270 (310)
258 KOG0399 Glutamate synthase [Am 33.4 1.6E+02 0.0035 34.5 7.9 158 49-232 1785-1949(2142)
259 PRK09423 gldA glycerol dehydro 33.3 1.2E+02 0.0026 30.2 6.7 84 53-149 11-97 (366)
260 PRK14619 NAD(P)H-dependent gly 33.0 1.5E+02 0.0033 28.6 7.2 28 49-82 4-31 (308)
261 TIGR00465 ilvC ketol-acid redu 32.9 1.8E+02 0.0039 28.6 7.7 23 49-71 3-25 (314)
262 cd00293 USP_Like Usp: Universa 32.8 1.3E+02 0.0028 23.5 5.8 37 108-145 66-102 (130)
263 PRK03692 putative UDP-N-acetyl 32.6 80 0.0017 29.9 5.0 21 125-146 146-166 (243)
264 PRK10126 tyrosine phosphatase; 32.6 2.5E+02 0.0054 24.0 7.8 80 49-145 2-84 (147)
265 PRK07231 fabG 3-ketoacyl-(acyl 32.4 1.7E+02 0.0037 26.3 7.2 31 49-85 5-36 (251)
266 KOG4354 N-acetyl-gamma-glutamy 32.4 94 0.002 29.8 5.2 46 37-86 7-52 (340)
267 PRK13372 pcmA protocatechuate 32.3 66 0.0014 33.2 4.6 75 128-203 187-273 (444)
268 PF00148 Oxidored_nitro: Nitro 32.2 13 0.00029 37.2 -0.4 88 49-153 271-358 (398)
269 PRK00865 glutamate racemase; P 32.1 3.6E+02 0.0078 25.5 9.5 95 49-168 5-101 (261)
270 PRK04148 hypothetical protein; 32.0 2.7E+02 0.0059 23.9 7.7 80 48-147 16-113 (134)
271 PRK08655 prephenate dehydrogen 32.0 1.5E+02 0.0032 30.5 7.2 22 50-71 1-23 (437)
272 TIGR00872 gnd_rel 6-phosphoglu 31.9 1.4E+02 0.003 28.8 6.6 28 50-83 1-28 (298)
273 COG0394 Wzb Protein-tyrosine-p 31.9 2.3E+02 0.005 24.3 7.3 84 49-146 2-86 (139)
274 PHA00771 head assembly protein 31.8 66 0.0014 27.5 3.7 48 161-208 62-113 (151)
275 TIGR02622 CDP_4_6_dhtase CDP-g 31.7 2.8E+02 0.006 27.0 8.9 78 49-145 4-84 (349)
276 TIGR00715 precor6x_red precorr 31.4 1.8E+02 0.004 27.6 7.2 75 51-145 130-206 (256)
277 cd03799 GT1_amsK_like This is 31.3 4.2E+02 0.009 24.8 10.0 40 102-144 224-263 (355)
278 PRK12825 fabG 3-ketoacyl-(acyl 31.1 2.1E+02 0.0046 25.5 7.5 31 49-85 6-37 (249)
279 PRK10309 galactitol-1-phosphat 30.9 1.1E+02 0.0025 29.5 6.0 96 49-164 161-258 (347)
280 PLN00016 RNA-binding protein; 30.9 1.2E+02 0.0026 30.0 6.3 36 46-87 49-89 (378)
281 PRK08507 prephenate dehydrogen 30.8 1.4E+02 0.003 28.3 6.4 22 50-71 1-22 (275)
282 PRK05586 biotin carboxylase; V 30.7 62 0.0013 33.2 4.2 34 50-89 3-36 (447)
283 cd01078 NAD_bind_H4MPT_DH NADP 30.7 1.7E+02 0.0038 25.9 6.7 24 48-71 27-51 (194)
284 PRK07326 short chain dehydroge 30.5 2E+02 0.0044 25.7 7.3 31 49-85 6-37 (237)
285 PRK09291 short chain dehydroge 30.4 1.8E+02 0.0039 26.4 7.0 79 50-145 3-82 (257)
286 PF05582 Peptidase_U57: YabG p 30.4 49 0.0011 32.1 3.1 46 106-151 124-169 (287)
287 COG2120 Uncharacterized protei 30.4 4.5E+02 0.0098 24.5 10.8 94 46-145 7-118 (237)
288 PRK09860 putative alcohol dehy 30.1 1.7E+02 0.0038 29.4 7.3 85 53-149 12-101 (383)
289 PRK13301 putative L-aspartate 30.0 1.3E+02 0.0027 29.1 5.8 34 49-85 2-35 (267)
290 PRK12815 carB carbamoyl phosph 30.0 2.2E+02 0.0047 33.0 8.7 37 48-90 554-601 (1068)
291 TIGR00561 pntA NAD(P) transhyd 29.7 2.3E+02 0.0049 30.0 8.1 98 46-163 161-280 (511)
292 PRK15204 undecaprenyl-phosphat 29.1 2.7E+02 0.006 28.9 8.7 37 49-88 146-182 (476)
293 PRK06182 short chain dehydroge 29.1 2.2E+02 0.0048 26.4 7.4 31 49-85 3-34 (273)
294 PLN02427 UDP-apiose/xylose syn 29.1 1.6E+02 0.0036 29.1 6.9 33 48-85 13-46 (386)
295 PLN02871 UDP-sulfoquinovose:DA 29.1 2.3E+02 0.0051 28.8 8.2 19 127-145 135-153 (465)
296 PRK10217 dTDP-glucose 4,6-dehy 29.0 1.8E+02 0.0039 28.2 7.1 80 50-145 2-83 (355)
297 PRK08057 cobalt-precorrin-6x r 28.9 2E+02 0.0043 27.3 7.0 82 49-155 2-86 (248)
298 TIGR01035 hemA glutamyl-tRNA r 28.6 2.7E+02 0.0058 28.4 8.4 81 47-154 178-260 (417)
299 cd08190 HOT Hydroxyacid-oxoaci 28.6 1.8E+02 0.004 29.5 7.2 85 53-149 4-93 (414)
300 cd07367 CarBb CarBb is the B s 28.5 90 0.0019 29.9 4.6 79 127-206 33-121 (268)
301 PRK00885 phosphoribosylamine-- 28.4 2E+02 0.0042 29.1 7.4 22 50-71 1-22 (420)
302 cd04893 ACT_GcvR_1 ACT domains 28.2 25 0.00055 26.7 0.6 32 1-32 19-50 (77)
303 COG1648 CysG Siroheme synthase 28.2 1.8E+02 0.0038 26.9 6.4 134 49-234 12-147 (210)
304 cd03802 GT1_AviGT4_like This f 28.2 3.3E+02 0.0071 25.4 8.6 42 128-171 79-121 (335)
305 PRK12767 carbamoyl phosphate s 27.9 1.8E+02 0.004 27.9 6.8 75 49-143 1-76 (326)
306 PRK05294 carB carbamoyl phosph 27.9 2.1E+02 0.0045 33.1 8.1 38 46-89 551-599 (1066)
307 PRK11908 NAD-dependent epimera 27.7 1.7E+02 0.0036 28.5 6.5 31 50-85 2-33 (347)
308 PLN02928 oxidoreductase family 27.6 6.1E+02 0.013 25.1 13.6 166 48-245 158-338 (347)
309 PF00208 ELFV_dehydrog: Glutam 27.5 79 0.0017 29.9 4.0 168 48-242 31-218 (244)
310 PRK07574 formate dehydrogenase 27.4 6.6E+02 0.014 25.4 13.0 158 48-245 191-360 (385)
311 PRK06392 homoserine dehydrogen 27.4 2.4E+02 0.0053 27.8 7.6 37 50-86 1-39 (326)
312 PF12147 Methyltransf_20: Puta 27.1 2.7E+02 0.006 27.3 7.6 93 46-152 133-225 (311)
313 PLN02572 UDP-sulfoquinovose sy 27.1 6.6E+02 0.014 25.7 11.0 32 47-84 45-77 (442)
314 cd00115 LMWPc Substituted upda 27.1 2.3E+02 0.005 23.7 6.6 85 50-146 1-86 (141)
315 COG2247 LytB Putative cell wal 27.1 1.5E+02 0.0033 29.3 5.9 57 99-157 40-96 (337)
316 PRK05866 short chain dehydroge 27.0 3.3E+02 0.0072 25.8 8.4 30 49-84 40-70 (293)
317 cd01998 tRNA_Me_trans tRNA met 26.9 2.4E+02 0.0052 28.0 7.5 62 51-117 1-66 (349)
318 cd07949 PCA_45_Doxase_B_like_1 26.9 74 0.0016 30.7 3.8 78 126-204 38-127 (276)
319 COG1064 AdhP Zn-dependent alco 26.9 3.8E+02 0.0083 26.7 8.8 116 49-192 167-285 (339)
320 TIGR03466 HpnA hopanoid-associ 26.9 2E+02 0.0043 27.2 6.8 32 50-87 1-33 (328)
321 COG0421 SpeE Spermidine syntha 26.8 2.3E+02 0.005 27.5 7.1 82 47-147 75-160 (282)
322 PRK12815 carB carbamoyl phosph 26.8 2.3E+02 0.005 32.8 8.2 36 48-89 6-52 (1068)
323 PLN02948 phosphoribosylaminoim 26.7 3.6E+02 0.0077 28.9 9.2 39 47-91 20-58 (577)
324 PRK08091 ribulose-phosphate 3- 26.7 3.6E+02 0.0078 25.3 8.2 86 49-145 118-209 (228)
325 cd00762 NAD_bind_malic_enz NAD 26.7 1.8E+02 0.0038 27.9 6.1 32 127-158 97-129 (254)
326 PRK14665 mnmA tRNA-specific 2- 26.7 2.3E+02 0.0049 28.5 7.3 61 49-116 5-65 (360)
327 KOG0339 ATP-dependent RNA heli 26.6 77 0.0017 33.5 3.9 121 32-164 246-368 (731)
328 TIGR03190 benz_CoA_bzdN benzoy 26.2 3.8E+02 0.0083 26.9 8.9 93 47-145 227-322 (377)
329 TIGR01850 argC N-acetyl-gamma- 26.0 1.4E+02 0.003 29.7 5.6 34 50-88 1-35 (346)
330 KOG3075 Ribose 5-phosphate iso 25.8 1.2E+02 0.0027 28.9 4.8 52 50-115 43-94 (261)
331 PRK05557 fabG 3-ketoacyl-(acyl 25.8 3.7E+02 0.0081 23.9 8.2 31 49-85 5-36 (248)
332 PRK14831 undecaprenyl pyrophos 25.7 2.5E+02 0.0054 26.7 7.0 63 120-183 172-237 (249)
333 cd08551 Fe-ADH iron-containing 25.7 2.1E+02 0.0046 28.4 6.9 85 53-149 4-93 (370)
334 PLN02968 Probable N-acetyl-gam 25.5 1.5E+02 0.0033 30.0 5.9 38 47-88 36-73 (381)
335 PRK12829 short chain dehydroge 25.5 2.7E+02 0.0057 25.4 7.2 32 48-85 10-42 (264)
336 COG2099 CobK Precorrin-6x redu 25.4 2.5E+02 0.0054 26.9 6.8 74 49-145 2-75 (257)
337 COG0796 MurI Glutamate racemas 25.4 1.4E+02 0.003 28.9 5.2 81 50-149 68-149 (269)
338 PLN02662 cinnamyl-alcohol dehy 25.4 3.4E+02 0.0073 25.7 8.1 33 49-87 4-37 (322)
339 PF00899 ThiF: ThiF family; I 25.3 2E+02 0.0043 23.9 5.8 23 49-71 2-24 (135)
340 PF11039 DUF2824: Protein of u 25.2 84 0.0018 27.1 3.3 50 159-208 60-113 (151)
341 PRK08125 bifunctional UDP-gluc 25.2 1.8E+02 0.004 31.4 6.8 66 14-86 282-348 (660)
342 PRK08293 3-hydroxybutyryl-CoA 25.1 98 0.0021 29.6 4.3 29 50-84 4-32 (287)
343 PF02571 CbiJ: Precorrin-6x re 25.1 2.4E+02 0.0052 26.7 6.8 81 50-154 1-86 (249)
344 PRK06947 glucose-1-dehydrogena 25.1 3.1E+02 0.0067 24.7 7.5 32 49-86 2-34 (248)
345 TIGR01472 gmd GDP-mannose 4,6- 25.0 3.2E+02 0.0068 26.4 8.0 79 50-145 1-87 (343)
346 PF01451 LMWPc: Low molecular 24.9 3.3E+02 0.0072 22.6 7.1 79 52-146 1-86 (138)
347 COG1712 Predicted dinucleotide 24.9 1.8E+02 0.0039 27.6 5.7 33 50-86 1-33 (255)
348 KOG2380 Prephenate dehydrogena 24.9 3.1E+02 0.0068 27.7 7.6 26 47-72 50-75 (480)
349 cd03808 GT1_cap1E_like This fa 24.9 4.8E+02 0.01 23.9 9.0 18 128-145 72-89 (359)
350 COG2099 CobK Precorrin-6x redu 24.8 1.9E+02 0.004 27.8 5.8 42 102-143 161-203 (257)
351 PRK07060 short chain dehydroge 24.7 3.4E+02 0.0073 24.3 7.7 74 49-144 9-85 (245)
352 TIGR03446 mycothiol_Mca mycoth 24.7 5.8E+02 0.012 24.7 9.5 17 127-143 112-128 (283)
353 PRK05601 DNA polymerase III su 24.5 2.8E+02 0.006 28.1 7.3 72 48-135 296-370 (377)
354 PRK06057 short chain dehydroge 24.5 3.6E+02 0.0079 24.5 7.9 30 49-84 7-37 (255)
355 PRK14057 epimerase; Provisiona 24.4 4E+02 0.0088 25.4 8.1 86 49-145 132-223 (254)
356 TIGR01214 rmlD dTDP-4-dehydror 24.3 2.3E+02 0.0051 26.3 6.7 28 51-84 1-29 (287)
357 PRK11559 garR tartronate semia 24.3 2.2E+02 0.0048 27.0 6.6 28 49-82 2-29 (296)
358 PLN02653 GDP-mannose 4,6-dehyd 23.9 3.8E+02 0.0083 25.7 8.3 80 49-145 6-92 (340)
359 PRK08664 aspartate-semialdehyd 23.7 1E+02 0.0022 30.6 4.2 36 48-88 2-38 (349)
360 TIGR00147 lipid kinase, YegS/R 23.7 1.4E+02 0.003 28.5 5.0 64 82-147 4-68 (293)
361 COG0541 Ffh Signal recognition 23.5 7.8E+02 0.017 25.6 10.4 144 46-208 97-261 (451)
362 cd02001 TPP_ComE_PpyrDC Thiami 23.5 2.6E+02 0.0056 24.2 6.3 62 49-115 60-126 (157)
363 PF02423 OCD_Mu_crystall: Orni 23.4 1.4E+02 0.0031 29.1 5.1 106 47-177 126-235 (313)
364 TIGR02638 lactal_redase lactal 23.3 4.6E+02 0.0099 26.2 8.9 86 53-150 10-100 (379)
365 cd01992 PP-ATPase N-terminal d 23.3 3.5E+02 0.0076 23.4 7.3 93 51-146 1-106 (185)
366 TIGR01470 cysG_Nterm siroheme 23.2 1.6E+02 0.0034 26.9 5.1 80 49-155 9-88 (205)
367 PRK06046 alanine dehydrogenase 23.1 3.3E+02 0.0071 26.7 7.6 102 47-177 127-234 (326)
368 PRK07340 ornithine cyclodeamin 23.1 2.7E+02 0.0059 27.0 7.0 101 47-177 123-228 (304)
369 cd08185 Fe-ADH1 Iron-containin 23.0 2.5E+02 0.0055 28.0 6.9 88 50-150 5-97 (380)
370 PLN02775 Probable dihydrodipic 23.0 2.2E+02 0.0048 27.7 6.2 35 47-87 9-44 (286)
371 PF01976 DUF116: Protein of un 22.9 89 0.0019 27.6 3.2 62 101-167 76-142 (158)
372 PF13380 CoA_binding_2: CoA bi 22.9 1.8E+02 0.004 23.9 4.9 28 51-84 2-33 (116)
373 PF00044 Gp_dh_N: Glyceraldehy 22.9 1E+02 0.0022 27.0 3.5 32 50-86 1-32 (151)
374 PRK05993 short chain dehydroge 22.9 3.7E+02 0.008 25.0 7.7 30 50-85 5-35 (277)
375 COG2084 MmsB 3-hydroxyisobutyr 22.8 3E+02 0.0065 26.8 7.0 46 50-113 1-46 (286)
376 PRK06180 short chain dehydroge 22.7 4E+02 0.0087 24.7 7.9 32 49-86 4-36 (277)
377 PF00455 DeoRC: DeoR C termina 22.7 3.1E+02 0.0067 23.9 6.7 102 51-187 21-128 (161)
378 PRK05476 S-adenosyl-L-homocyst 22.7 3.1E+02 0.0068 28.2 7.5 82 51-164 214-296 (425)
379 PRK06823 ornithine cyclodeamin 22.6 4.1E+02 0.009 26.0 8.2 106 47-177 126-233 (315)
380 PRK06349 homoserine dehydrogen 22.6 3.2E+02 0.0069 27.9 7.6 40 48-87 2-45 (426)
381 PF00670 AdoHcyase_NAD: S-aden 22.5 2.3E+02 0.0051 25.1 5.7 87 49-168 23-111 (162)
382 COG1004 Ugd Predicted UDP-gluc 22.5 1.9E+02 0.0042 29.5 5.8 33 50-88 1-33 (414)
383 PF00023 Ank: Ankyrin repeat H 22.4 64 0.0014 19.8 1.7 13 174-186 2-14 (33)
384 cd06334 PBP1_ABC_ligand_bindin 22.4 6E+02 0.013 24.8 9.4 65 79-147 140-206 (351)
385 cd07369 PydA_Rs_like PydA is a 22.4 1.3E+02 0.0028 29.9 4.5 76 127-203 37-128 (329)
386 PLN02204 diacylglycerol kinase 22.3 2E+02 0.0043 31.1 6.1 67 81-149 161-231 (601)
387 PRK09424 pntA NAD(P) transhydr 22.3 3E+02 0.0065 29.1 7.4 95 46-160 162-278 (509)
388 PRK13373 putative dioxygenase; 22.3 1.5E+02 0.0032 29.7 4.8 60 127-186 37-110 (344)
389 PRK11175 universal stress prot 22.2 1.9E+02 0.0041 27.4 5.6 65 102-166 227-300 (305)
390 TIGR01915 npdG NADPH-dependent 22.2 1.1E+02 0.0024 27.9 3.9 28 50-83 1-29 (219)
391 PLN02896 cinnamyl-alcohol dehy 22.2 3.3E+02 0.0071 26.5 7.5 31 49-85 10-41 (353)
392 cd08186 Fe-ADH8 Iron-containin 22.2 4.2E+02 0.009 26.5 8.3 89 53-149 4-97 (383)
393 PRK10957 iron-enterobactin tra 22.0 5.1E+02 0.011 24.7 8.7 17 129-145 106-122 (317)
394 PRK05717 oxidoreductase; Valid 22.0 5.7E+02 0.012 23.2 8.7 30 49-84 10-40 (255)
395 cd01966 Nitrogenase_NifN_1 Nit 22.0 2.6E+02 0.0057 28.5 6.9 105 49-184 300-414 (417)
396 TIGR03679 arCOG00187 arCOG0018 22.0 3.8E+02 0.0082 24.7 7.4 40 78-117 21-62 (218)
397 cd08239 THR_DH_like L-threonin 21.9 4.7E+02 0.01 25.0 8.4 78 49-147 164-242 (339)
398 smart00846 Gp_dh_N Glyceraldeh 21.8 1.2E+02 0.0027 26.2 3.9 32 50-86 1-32 (149)
399 PLN02413 choline-phosphate cyt 21.8 5.4E+02 0.012 25.2 8.4 45 43-87 21-66 (294)
400 PRK07201 short chain dehydroge 21.7 2.8E+02 0.0061 29.5 7.4 34 46-85 368-402 (657)
401 PF02571 CbiJ: Precorrin-6x re 21.7 87 0.0019 29.7 3.1 60 48-121 170-229 (249)
402 TIGR03570 NeuD_NnaD sugar O-ac 21.7 1.5E+02 0.0033 25.8 4.6 33 51-89 1-33 (201)
403 PF03949 Malic_M: Malic enzyme 21.7 66 0.0014 30.8 2.3 94 49-158 25-129 (255)
404 PF02603 Hpr_kinase_N: HPr Ser 21.7 65 0.0014 27.1 2.0 57 47-122 46-113 (127)
405 PLN00198 anthocyanidin reducta 21.6 6.7E+02 0.014 24.0 9.5 35 48-88 8-43 (338)
406 cd00886 MogA_MoaB MogA_MoaB fa 21.5 3.2E+02 0.007 23.4 6.5 53 100-153 22-78 (152)
407 cd00757 ThiF_MoeB_HesA_family 21.5 4.4E+02 0.0096 24.2 7.8 23 49-71 21-43 (228)
408 PRK10606 btuE putative glutath 21.5 5.3E+02 0.011 23.1 8.0 106 5-137 4-116 (183)
409 COG3640 CooC CO dehydrogenase 21.4 1.4E+02 0.003 28.5 4.2 50 50-113 1-50 (255)
410 TIGR02712 urea_carbox urea car 21.3 2.1E+02 0.0045 33.6 6.5 35 50-90 2-36 (1201)
411 cd06379 PBP1_iGluR_NMDA_NR1 N- 21.3 5.2E+02 0.011 25.3 8.7 68 78-149 153-226 (377)
412 PRK02318 mannitol-1-phosphate 21.3 1E+02 0.0023 30.9 3.8 31 50-85 1-31 (381)
413 PRK08642 fabG 3-ketoacyl-(acyl 21.3 4.3E+02 0.0094 23.7 7.7 31 49-85 5-36 (253)
414 COG1103 Archaea-specific pyrid 21.2 2.1E+02 0.0046 28.0 5.5 89 63-165 144-232 (382)
415 PF07021 MetW: Methionine bios 21.2 2.3E+02 0.0049 26.0 5.5 71 49-145 14-84 (193)
416 cd03129 GAT1_Peptidase_E_like 21.0 6.1E+02 0.013 22.8 9.1 109 60-192 13-121 (210)
417 PRK00536 speE spermidine synth 21.0 1.6E+02 0.0036 28.1 4.8 44 46-110 70-113 (262)
418 PF03446 NAD_binding_2: NAD bi 21.0 1.2E+02 0.0027 26.2 3.7 28 49-82 1-28 (163)
419 TIGR02263 benz_CoA_red_C benzo 21.0 4.5E+02 0.0098 26.4 8.3 92 47-145 231-330 (380)
420 cd04875 ACT_F4HF-DF N-terminal 21.0 44 0.00096 24.8 0.8 31 1-31 17-49 (74)
421 PF04309 G3P_antiterm: Glycero 20.9 1E+02 0.0022 27.8 3.2 55 101-158 81-136 (175)
422 TIGR03649 ergot_EASG ergot alk 20.9 3.7E+02 0.0079 25.1 7.3 32 51-88 1-33 (285)
423 PRK05294 carB carbamoyl phosph 20.9 2.4E+02 0.0052 32.6 6.9 36 48-89 6-52 (1066)
424 PF03435 Saccharop_dh: Sacchar 20.9 1.8E+02 0.0039 28.9 5.4 84 52-155 1-85 (386)
425 KOG0029 Amine oxidase [Seconda 20.8 1.5E+02 0.0032 31.2 4.9 65 44-115 10-92 (501)
426 TIGR00420 trmU tRNA (5-methyla 20.8 2.5E+02 0.0054 28.0 6.3 62 50-116 1-68 (352)
427 PLN03139 formate dehydrogenase 20.8 8.9E+02 0.019 24.5 14.0 159 47-245 197-367 (386)
428 PF04273 DUF442: Putative phos 20.8 3.5E+02 0.0075 22.2 6.1 54 55-117 10-63 (110)
429 TIGR03201 dearomat_had 6-hydro 20.7 2.6E+02 0.0057 27.1 6.4 45 50-113 168-212 (349)
430 TIGR03659 IsdE heme ABC transp 20.6 3.9E+02 0.0084 25.3 7.4 16 129-144 84-99 (289)
431 PF10281 Ish1: Putative stress 20.6 1.7E+02 0.0038 19.0 3.5 30 101-134 7-36 (38)
432 PRK10116 universal stress prot 20.5 1.7E+02 0.0037 24.0 4.4 43 103-146 69-112 (142)
433 cd08193 HVD 5-hydroxyvalerate 20.5 5.1E+02 0.011 25.7 8.6 87 52-150 6-97 (376)
434 TIGR01369 CPSaseII_lrg carbamo 20.5 2.5E+02 0.0055 32.4 7.0 37 48-90 5-52 (1050)
435 PRK06128 oxidoreductase; Provi 20.4 7.3E+02 0.016 23.4 9.7 30 50-85 56-86 (300)
436 PRK06063 DNA polymerase III su 20.4 2.8E+02 0.0061 27.1 6.5 73 48-136 234-309 (313)
437 PRK15469 ghrA bifunctional gly 20.4 8E+02 0.017 23.9 11.1 155 49-245 136-300 (312)
438 PRK10084 dTDP-glucose 4,6 dehy 20.4 2.6E+02 0.0057 27.0 6.3 22 50-71 1-23 (352)
439 TIGR01179 galE UDP-glucose-4-e 20.3 4.2E+02 0.0091 24.7 7.6 28 51-84 1-29 (328)
440 TIGR01832 kduD 2-deoxy-D-gluco 20.3 5.4E+02 0.012 23.1 8.1 30 49-84 5-35 (248)
441 PRK08177 short chain dehydroge 20.3 6.1E+02 0.013 22.5 8.7 30 50-85 2-32 (225)
442 cd03784 GT1_Gtf_like This fami 20.1 3.9E+02 0.0084 26.3 7.6 38 130-168 98-135 (401)
443 PF02630 SCO1-SenC: SCO1/SenC; 20.0 2.1E+02 0.0046 25.2 5.1 82 48-140 52-139 (174)
No 1
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-81 Score=596.58 Aligned_cols=302 Identities=42% Similarity=0.722 Sum_probs=289.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
+|||+||||++||.++|++|+++ +|+|++|||+||++.|||+++.++||++.|.++||| |++|++++++++
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~------~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip---v~qP~~l~~~e~ 71 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA------GHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIP---VFQPEKLNDPEF 71 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC------CCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCc---eeccccCCcHHH
Confidence 58999999999999999999985 599999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEE
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAR 208 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q 208 (378)
.+.+++++||++|+++|++|||+++|+.+++||||+||||||+|||++||||||+|||++||+|+|+|++++|+|||++|
T Consensus 72 ~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~~lDaG~Il~q 151 (307)
T COG0223 72 LEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDAGDILAQ 151 (307)
T ss_pred HHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEEecCccCccccCccHHHHHHHcCCcccceEEEEccccCCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHhcCC
Q 048078 209 EKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFA 288 (378)
Q Consensus 209 ~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~ 288 (378)
+.++|.++||..+|++|+++.++++|.++|..+.+|++ ...||+++++||++|++++|++|||+++|.+|+|+|||++
T Consensus 152 ~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~~i~~g~~--~~~~Q~e~~~tya~ki~ked~~Idw~~~a~~i~n~IRa~~ 229 (307)
T COG0223 152 REVPIEPDDTAGSLHDKLAELGAELLLETLPQLEAGTL--TPIPQDEEEATYAPKITKEDGRIDWSKPAAQILNKIRAFN 229 (307)
T ss_pred EEeccCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCcccCccccCCCHHHcccCCccCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999986 7899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCCCCCCcEE-EEeCCeEEEEeCCCCeEEEEEEecCCCCccCHHHHH
Q 048078 289 GWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGI-TFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFW 367 (378)
Q Consensus 289 p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~~~~pG~i-~~~~~~l~V~c~dg~~l~I~~lq~~gkk~~~a~~f~ 367 (378)
||||||+.+. |+ +++|++++..+......||+| ..++++++|+|++| .|+|.++|++|||.|++.+|+
T Consensus 230 P~Pga~~~~~------~~----~iki~~a~~~~~~~~~~pG~i~~~~~~~l~Va~~~g-~l~l~~lQ~~gkk~~~~~~~l 298 (307)
T COG0223 230 PWPGAWTELG------GK----RIKIWEARVLEGASNGKPGEILAADKKGLLVACGDG-ALRLTELQPAGKKAMSAADFL 298 (307)
T ss_pred CCCceEEEEC------Ce----EEEEEEEEEccccccCCCcceEEecCCcEEEEeCCc-eEEEEeeccCCCCCCCHHHHh
Confidence 9999999986 54 899999998876433789999 66778999999999 699999999999999999999
Q ss_pred cccCC
Q 048078 368 NGLRG 372 (378)
Q Consensus 368 ~g~~~ 372 (378)
||.+.
T Consensus 299 ~g~~~ 303 (307)
T COG0223 299 NGRRL 303 (307)
T ss_pred ccccc
Confidence 99873
No 2
>PLN02285 methionyl-tRNA formyltransferase
Probab=100.00 E-value=3.3e-76 Score=578.48 Aligned_cols=330 Identities=75% Similarity=1.172 Sum_probs=295.9
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
..++|||+||||++||.++|++|+++.+.+..+++|++|||+++++.||+++..++|++++|+++|||+++++++.+.++
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~ 82 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE 82 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC
Confidence 35689999999999999999999987655555799999999999999999999999999999999999876778888888
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCe
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPV 205 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~I 205 (378)
+++++.|++.+||++|+++|++|||+++|+.+++|+||+||||||+|||++|++|||++|++++|||+|+|++++|+|||
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLLP~yRG~~pi~~ai~~G~~~tGvTih~~~~~~D~G~I 162 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALDAGPV 162 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecccccCCCCcCHHHHHHHcCCCcEEEEEEEECCCccCCCE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHh
Q 048078 206 IAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVR 285 (378)
Q Consensus 206 i~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iR 285 (378)
|+|++++|.++||+.+|++|+..++++++.++|+.+.+|.....++||+++.+||++|++++|+.|||+++|++|+|+||
T Consensus 163 i~q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~~~~~~~~~~Q~~~~atya~k~~~~d~~Idw~~~a~~I~~~iR 242 (334)
T PLN02285 163 IAQERVEVDEDIKAPELLPLLFELGTKLLLRELPSVLDGSAKDKATPQDDSKATHAPKISPEESWLSFDEEARVLHNKVR 242 (334)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCCCceECCCCCHHHeEEcCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999998863235789999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCC--CCCCcEEEEeCCeEEEEeCCCCeEEEEEEecCCCCccCH
Q 048078 286 AFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQ--TNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSA 363 (378)
Q Consensus 286 A~~p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~--~~~pG~i~~~~~~l~V~c~dg~~l~I~~lq~~gkk~~~a 363 (378)
|++||||+|+++....+++|+....++++++++..+... ...||.+...+++++|+|+||.+|+|.++|++|||.|++
T Consensus 243 a~~p~Pga~~~~~~~~~~~~~~~~~~iki~~~~~~~~~~~~~~~~g~~~~~~~~l~V~c~dg~~l~i~~lq~~Gkk~m~~ 322 (334)
T PLN02285 243 AFAGWPGTRAKFQLVDDGDGEREVLELKIITTRVCEAGGEQTGSADAVTFKKDSLLVPCGGGTWLEVLEVQPPGKKVMKA 322 (334)
T ss_pred cCCCCCcEEEEEccccccCCcccceeEEEEEEEEeccccccCCCCcEEEEeCCeEEEEeCCCCEEEEEEEECCCCCCCcH
Confidence 999999999988522111232223478899887654321 236788766788999999999779999999999999999
Q ss_pred HHHHcccCCCCc
Q 048078 364 AAFWNGLRGQKL 375 (378)
Q Consensus 364 ~~f~~g~~~~~~ 375 (378)
.+|+||++++.+
T Consensus 323 ~~f~~G~~~~~~ 334 (334)
T PLN02285 323 KDFWNGLRGQTL 334 (334)
T ss_pred HHHhcCCCCCCC
Confidence 999999987643
No 3
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=100.00 E-value=6.3e-73 Score=551.94 Aligned_cols=303 Identities=37% Similarity=0.655 Sum_probs=282.8
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFL 129 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~ 129 (378)
|||+||||++|+.++|++|++. +++|++|||+|+++.||+++..+++++++|+++||| ++++++.++++.+
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ip---v~~~~~~~~~~~~ 71 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED------NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIP---VFQPEKQRQLEEL 71 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCC---EEecCCCCcHHHH
Confidence 7999999999999999999985 599999999999999999999999999999999999 8888888877888
Q ss_pred HHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEE
Q 048078 130 SNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIARE 209 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~ 209 (378)
+.+++.++|++|+++|++|||+++|+.+++|+||+|||+||+|||++|++|||+||++++|+|+|+|++++|+|||+.|+
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~G~~~tGvTih~~~~~~D~G~Ii~q~ 151 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQRAILNGDKKTGVTIMQMVPKMDAGDILKQE 151 (313)
T ss_pred HHHHhhCCCEEEEccchhhCCHHHHhhccCCEEEecCccccCCCCccHHHHHHHCCCCeEEEEEEEEccccCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHhcCCC
Q 048078 210 KMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAG 289 (378)
Q Consensus 210 ~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~p 289 (378)
.++|.++||+.+|++|+..++++++.++|+.+.+|.. .++||++..+||++|++++|+.|||+++|++|+|+|||++|
T Consensus 152 ~~~I~~~~t~~~l~~~l~~~~~~ll~~~l~~l~~~~~--~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~p 229 (313)
T TIGR00460 152 TFPIEEEDNSGTLSDKLSELGAQLLIETLKELPEGKN--KPEPQDAEEATYAPKISKEQERIDWNQSAEELLNKIRALNP 229 (313)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CcccCCCCCceECCCCCHHHeeECccCCHHHHHHHHhccCC
Confidence 9999999999999999999999999999999998875 67899999999999999999999999999999999999999
Q ss_pred CCCcEEEEeeeecCCCCcceeEEEEEEeeecCCC-CCCCCcEE-EEeCCeEEEEeC-CCCeEEEEEEecCCCCccCHHHH
Q 048078 290 WPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNI-QTNEVDGI-TFKKDALVVPCG-ECTALEVLEVQLPGKKAVSAAAF 366 (378)
Q Consensus 290 ~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~-~~~~pG~i-~~~~~~l~V~c~-dg~~l~I~~lq~~gkk~~~a~~f 366 (378)
|||||++++ |+ ++++++++..... ....||+| .+++++++|+|+ || +|+|.++|++|||.|+|.+|
T Consensus 230 ~pga~~~~~------g~----~i~i~~a~~~~~~~~~~~pG~v~~~~~~~~~V~~~~dg-~l~i~~lq~~Gkk~~~a~~f 298 (313)
T TIGR00460 230 WPTAWLTFE------GK----NIKIHKAKVIDLSTYKAKPGEIVYHNKKGILVACGKDG-ILLLLSLQPPGKKVMRAEDF 298 (313)
T ss_pred CCceEEEEC------CE----EEEEEEEEEccCCCCCCCCCEEEEeCCCeEEEEEcCCC-EEEEEEEeCCCCCcCcHHHH
Confidence 999999885 54 7899998865432 22379999 566778999999 77 79999999999999999999
Q ss_pred HcccCCCC
Q 048078 367 WNGLRGQK 374 (378)
Q Consensus 367 ~~g~~~~~ 374 (378)
+||++.+.
T Consensus 299 ~~g~~~~~ 306 (313)
T TIGR00460 299 YNGSRHPW 306 (313)
T ss_pred HcCCCCcc
Confidence 99997653
No 4
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=100.00 E-value=4.4e-72 Score=545.40 Aligned_cols=301 Identities=40% Similarity=0.680 Sum_probs=283.4
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFL 129 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~ 129 (378)
|||+|||+++|+.++|++|++. +++|++|||+++++.||+++..+++++++|+++||| ++++.++++++++
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~------~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip---~~~~~~~~~~~~~ 71 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES------GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIP---VLQPEKLRDPEFL 71 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCC---EECcCCCCCHHHH
Confidence 7999999999999999999984 589999999999999999888999999999999999 8888888888999
Q ss_pred HHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEE
Q 048078 130 SNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIARE 209 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~ 209 (378)
+.|++.+||++|+++|++|||+++|+.+++|+||+|||+||+|||++|++|||+||++++|+|+|+|++++|+|||++|+
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~wai~~g~~~~GvTih~~~~~~D~G~Ii~q~ 151 (309)
T PRK00005 72 AELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGAAPIQRAIIAGDAETGVTIMQMDEGLDTGDMLLKA 151 (309)
T ss_pred HHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcccccCCCccHHHHHHHcCCCeEEEEEEEECCcccCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHhcCCC
Q 048078 210 KMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAG 289 (378)
Q Consensus 210 ~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~p 289 (378)
+++|.++||..+|++|+.+++.+++.++|+.+.+|.. .+.||+++.+||++|++++|+.|||+++|++|+|+|||++|
T Consensus 152 ~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~--~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~p 229 (309)
T PRK00005 152 EVPITPTDTAGELHDKLAELGADLLVETLKGLEDGTL--TPIPQDEEGVTYAPKISKEEARIDWSKPAAELENHIRGFNP 229 (309)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ceecCCCCCceECCCCCHHHeeEcCCCCHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999998876 68999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCCCCCCcEE-EEeCCeEEEEeCCCCeEEEEEEecCCCCccCHHHHHc
Q 048078 290 WPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGI-TFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWN 368 (378)
Q Consensus 290 ~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~~~~pG~i-~~~~~~l~V~c~dg~~l~I~~lq~~gkk~~~a~~f~~ 368 (378)
|||||++++ |+ ++++++++..+......||+| .+++++++|+|+|| +|+|.++|.+||+.|++++|+|
T Consensus 230 ~pga~~~~~------g~----~v~i~~a~~~~~~~~~~pG~i~~~~~~~~~V~~~dg-~l~i~~l~~~g~k~~~~~~f~~ 298 (309)
T PRK00005 230 WPGAWTELD------GQ----RLKILEAELVEASGSGAPGTILAIDKDGIVVATGEG-ALRLTQLQPPGKKPMSAADFLN 298 (309)
T ss_pred CCceEEEEC------CE----EEEEEEEEEccCCCCCCCCEEEEecCCeEEEEECCe-eEEEEEEECCCCCcccHHHHhc
Confidence 999999985 54 789999887554333579999 56778999999999 6999999999999999999999
Q ss_pred ccCC
Q 048078 369 GLRG 372 (378)
Q Consensus 369 g~~~ 372 (378)
|++.
T Consensus 299 g~~~ 302 (309)
T PRK00005 299 GRRL 302 (309)
T ss_pred CCCC
Confidence 9764
No 5
>PRK06988 putative formyltransferase; Provisional
Probab=100.00 E-value=4.3e-70 Score=531.45 Aligned_cols=300 Identities=25% Similarity=0.396 Sum_probs=276.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
+|||+||||++|+.++|+.|++. +++|++|||+++++.+ +..+++++++|+++||| ++.+.+.+++++
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~------~~~i~~Vvt~~d~~~~---~~~~~~v~~~A~~~gip---~~~~~~~~~~~~ 69 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR------GVDVALVVTHEDNPTE---NIWFGSVAAVAAEHGIP---VITPADPNDPEL 69 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC------CCCEEEEEcCCCCCcc---CcCCCHHHHHHHHcCCc---EEccccCCCHHH
Confidence 58999999999999999999985 5899999999987654 45678999999999999 778888888899
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEE
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAR 208 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q 208 (378)
++.|++.+||++|+++|++|||+++|+.+++|+||+|||+||+|||++|++|||+||++++|+|+|+|++++|+|||++|
T Consensus 70 ~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~~pi~~ai~~g~~~tGvTih~~~~~~D~G~Il~q 149 (312)
T PRK06988 70 RAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQ 149 (312)
T ss_pred HHHHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCcCHHHHHHHcCCCceEEEEEEECCCCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHhcCC
Q 048078 209 EKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFA 288 (378)
Q Consensus 209 ~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~ 288 (378)
+.++|.++||..+|++|+..++.+++.++|+.+.+|+. ...||+++.+||++|++++|+.|||+++|++|+|+|||++
T Consensus 150 ~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~--~~~~Q~~~~aty~~k~~~~d~~Idw~~~a~~I~~~iRA~~ 227 (312)
T PRK06988 150 TAVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLAGEA--PHLPNDLAQGSYFGGRKPEDGRIDWSKPAAQVYNLIRAVA 227 (312)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CcccCCCCCceECCCCChHHeEECCCCCHHHHHHHhccCC
Confidence 99999999999999999999999999999999998875 6789999999999999999999999999999999999997
Q ss_pred -CCCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCC----CCCCcEEEEeCCeEEEEeCCCC---eEEEEEEecCCCCc
Q 048078 289 -GWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQ----TNEVDGITFKKDALVVPCGECT---ALEVLEVQLPGKKA 360 (378)
Q Consensus 289 -p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~----~~~pG~i~~~~~~l~V~c~dg~---~l~I~~lq~~gkk~ 360 (378)
||||||++++ |+ +++|++++...... ...||+|. .+++++|+|+||. .+.|.++|++|||.
T Consensus 228 ~p~pga~~~~~------g~----~v~i~~a~~~~~~~~~~~~~~pG~i~-~~~~l~V~c~dg~~v~~l~i~~~q~~gkk~ 296 (312)
T PRK06988 228 PPYPGAFTDLG------GT----RFVVARARLAAPGAAAARDLPPGLHV-SDNALFGVCGDGRAVSILELRRQQDGGETV 296 (312)
T ss_pred CCCCeeEEEEC------CE----EEEEEEEEEccCCcccccCCCCCEEE-ECCCEEEECCCCCCcceEEEEEEEcCCCCc
Confidence 9999999985 54 78999988654321 14699984 5788999999995 58999999999999
Q ss_pred cCHHHHHcccCCC
Q 048078 361 VSAAAFWNGLRGQ 373 (378)
Q Consensus 361 ~~a~~f~~g~~~~ 373 (378)
|++++|+||+.-+
T Consensus 297 ~~~~~f~~~~~~~ 309 (312)
T PRK06988 297 VTPAQFAQFIHSS 309 (312)
T ss_pred CCHHHHhhhcccc
Confidence 9999999998644
No 6
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=100.00 E-value=1.3e-65 Score=546.22 Aligned_cols=297 Identities=29% Similarity=0.479 Sum_probs=275.9
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFL 129 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~ 129 (378)
|||+||||++|+.++|++|++. +++|++|+|+||++.+ +..+++++++|+++||| ++++.++++++++
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~------~~~i~~V~t~pd~~~~---~~~~~~v~~~a~~~~ip---~~~~~~~~~~~~~ 68 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA------GYEIAAVFTHTDNPGE---NHFFGSVARLAAELGIP---VYAPEDVNHPLWV 68 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCcEEEEEeCCCCCcC---CCCcCHHHHHHHHcCCc---EEeeCCCCcHHHH
Confidence 7999999999999999999984 6999999999998754 46778999999999999 8888899988999
Q ss_pred HHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEE
Q 048078 130 SNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIARE 209 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~ 209 (378)
+.|++.+||++|+++|++|||+++|+.+++|+||+|||+||+|||++|++|||+||++++|+|+|+|++++|+||||.|+
T Consensus 69 ~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~~p~~wai~~g~~~~GvTi~~~~~~~D~G~I~~q~ 148 (660)
T PRK08125 69 ERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQ 148 (660)
T ss_pred HHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCcCHHHHHHHcCCCcEEEEEEEECCCccCCCeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHHHhcCC-
Q 048078 210 KMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFA- 288 (378)
Q Consensus 210 ~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~iRA~~- 288 (378)
.++|.++||+.+|++|+..++.+++.++|+.+..|.. .++||+++.+||++|++++|+.|||+++|++|+|+|||++
T Consensus 149 ~~~i~~~dt~~~l~~~l~~~~~~l~~~~l~~i~~~~~--~~~~Q~~~~~ty~~~~~~~d~~Idw~~~a~~i~~~iRa~~~ 226 (660)
T PRK08125 149 RVAIAPDDTALTLHHKLCHAARQLLEQTLPAIKHGNI--PEIPQDESQATYFGRRTPADGLIDWHKPASTLHNLVRAVTD 226 (660)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ccccCCCCCceeCCCCCHHHeEECCCCCHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999998876 6889999999999999999999999999999999999998
Q ss_pred CCCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCCCCCCcEEEEeCCeEEEEeCCCCeEEEEEEecCCCCccCHHHHHc
Q 048078 289 GWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNEVDGITFKKDALVVPCGECTALEVLEVQLPGKKAVSAAAFWN 368 (378)
Q Consensus 289 p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~~~~pG~i~~~~~~l~V~c~dg~~l~I~~lq~~gkk~~~a~~f~~ 368 (378)
||||||++++ |+ +++|++++..+......||+|...+ +++|+|+|| +|+|.++|++|||.|++++|+|
T Consensus 227 p~pga~~~~~------g~----~~~i~~a~~~~~~~~~~pG~i~~~~-~~~v~~~dg-~l~i~~~q~~g~~~~~~~~~~~ 294 (660)
T PRK08125 227 PWPGAFSYVG------EQ----KFTVWSSRVLPDASGAQPGTVLSVA-PLRIACGEG-ALEIVTGQAGDGLYMQGSQLAQ 294 (660)
T ss_pred CCCceEEEEC------CE----EEEEEEEEEccCCCCCCCCEEEEeC-CEEEEeCCc-EEEEEEEECCCCCccCHHHHhc
Confidence 9999999985 54 7999999876543334799994333 499999999 6999999999999999999999
Q ss_pred ccCC
Q 048078 369 GLRG 372 (378)
Q Consensus 369 g~~~ 372 (378)
|++.
T Consensus 295 g~~~ 298 (660)
T PRK08125 295 ELGL 298 (660)
T ss_pred CCCC
Confidence 9764
No 7
>PRK07579 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-47 Score=357.73 Aligned_cols=222 Identities=18% Similarity=0.235 Sum_probs=188.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
++||+|+|....+..+|+.|++... ..++++.+|.+....-.+ .....+ .++|+ +.+ .+
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~~---~~~-------~~ 59 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIARKN--DMDVDYFCSFKSQTSFAK---EIYQSP------IKQLD---VAE-------RV 59 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhhcc--CcceEEEEeccCCccccc---cccccc------ccCcc---hhh-------hH
Confidence 4699999999999999999998754 246888899886654211 000011 44455 321 22
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEE
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAR 208 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q 208 (378)
.+.+ .+||++|+++|++|||+++|+.+ ++||+||||||+|||++|++|||+||+ ++|+|+|+|++++|+||||.|
T Consensus 60 ~~~~--~~~DliVvvayg~ilp~~iL~~~--~~iNiHpSLLP~yRGaaPi~wAI~nGe-~tGvTih~mde~lDtGdIi~Q 134 (245)
T PRK07579 60 AEIV--ERYDLVLSFHCKQRFPAKLVNGV--RCINIHPGFNPYNRGWFPQVFSIINGL-KIGATIHEMDEQLDHGPIIAQ 134 (245)
T ss_pred Hhhh--cCCCEEEEchhhccCCHHHHhhC--CEEEEcCCcCCCCCCcCHHHHHHHCCC-eEEEEEEEEcCCCCCCCeeEE
Confidence 3333 24999999999999999999976 599999999999999999999999998 599999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCch--hHHHHHHHHhc
Q 048078 209 EKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDE--EAVVLHNKVRA 286 (378)
Q Consensus 209 ~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~--~a~~I~~~iRA 286 (378)
++++|.++||+.+|++|+..++++++.++|..+.+|.. .+.+|+++..+|++|++++|++|||++ +|++|+|+|||
T Consensus 135 ~~v~I~~~dt~~sL~~kl~~~~~~ll~e~L~~i~~g~~--~~~~q~~~~~~~~~k~~ked~~Idw~~~~~a~~I~n~IRA 212 (245)
T PRK07579 135 REVEIESWDSSGSVYARVMDIERELVLEHFDAIRDGSY--TAKKPATEGNLNSKKDFKQLREIDLDERGTFRHFINRLRA 212 (245)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cccCCCCccccccccCChhheEECCCCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999986 577898877888888999999999997 69999999999
Q ss_pred CC--CCCCcEEEEe
Q 048078 287 FA--GWPGTRAKMA 298 (378)
Q Consensus 287 ~~--p~pga~~~~~ 298 (378)
++ ||||||++.-
T Consensus 213 l~~~P~PgA~~~~~ 226 (245)
T PRK07579 213 LTHDDYKNAYFVDE 226 (245)
T ss_pred CCCCCCCcEEEEEc
Confidence 98 8999999763
No 8
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=2.9e-44 Score=340.01 Aligned_cols=235 Identities=20% Similarity=0.278 Sum_probs=201.5
Q ss_pred CCccccCCcceee--ccccccccccceeeEeeecCCCCCCC--------CCCC----------CCCCCCceEEEEecCcc
Q 048078 1 SNFFSLHSGLVED--EKTKEMNSSLMIRRFFCFKGPATSST--------TPSA----------FSVSRKKPLVFLGSPQV 60 (378)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----------~~~~~~~rIvf~Gs~~~ 60 (378)
|+|+..|++||++ |++++-+-.||||.-|..++...+.. .+.. ....+++||++|.|+
T Consensus 2 ~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg-- 79 (268)
T PLN02828 2 SDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASK-- 79 (268)
T ss_pred cHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcC--
Confidence 5899999999998 99999999999999998764211100 1111 123578999999999
Q ss_pred hHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCC-CCCCcHHHHHHHHhcCCcE
Q 048078 61 SVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTP-ERAGEDAFLSNLRALQPEL 139 (378)
Q Consensus 61 a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~-~~~~~~~~~~~l~~~~~Dl 139 (378)
.+.||++|+.+...++.+++|++|||+++++.+ .++.++|+++|||++++... .+..++++++.++ ++|+
T Consensus 80 ~g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~-------a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~--~~Dl 150 (268)
T PLN02828 80 QDHCLIDLLHRWQDGRLPVDITCVISNHERGPN-------THVMRFLERHGIPYHYLPTTKENKREDEILELVK--GTDF 150 (268)
T ss_pred CChhHHHHHHhhhcCCCCceEEEEEeCCCCCCC-------chHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHh--cCCE
Confidence 599999999998888788999999999875422 47899999999996533221 1233456777776 6999
Q ss_pred EEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEEEEEeCCCCCH
Q 048078 140 CITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKA 219 (378)
Q Consensus 140 iv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~~~~I~~~dt~ 219 (378)
+|+++||+|||+++++.++.++||+|||+||+|||++|++||+.+|++.+|+|+|+|++++|+||||.|+.++|.++||.
T Consensus 151 iVLAgym~IL~~~~l~~~~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~lD~GpII~Q~~v~V~~~dt~ 230 (268)
T PLN02828 151 LVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNL 230 (268)
T ss_pred EEEeeehHhCCHHHHhhccCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCCCCCCCeeEEEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 220 PELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 220 ~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
++|..|+...+.+++.++++.+.++..
T Consensus 231 ~~L~~r~~~~E~~~l~~av~~~~~~~~ 257 (268)
T PLN02828 231 RSFVQKSENLEKQCLAKAIKSYCELRV 257 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 999999999999999999999987653
No 9
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-45 Score=343.18 Aligned_cols=310 Identities=37% Similarity=0.543 Sum_probs=249.5
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
..++++.|+||+.|+.+.++.|+.. ++.+.+++.++....|++..-|+|+...|.+.|+++.-++.+.+.++
T Consensus 4 ~~~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~~k~~~- 75 (338)
T KOG3082|consen 4 KIPLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPGWKNFH- 75 (338)
T ss_pred ccccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccChhhccc-
Confidence 4478999999999999999999873 77889999999999999999999999999999999654333333332
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecC-CCCCCCe
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVR-ALDAGPV 205 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~-~~D~G~I 205 (378)
.+.+.++|++|+++||++||.++|.++++|.||+||||||+|||++|+++||++||+.|||||+.|+. .||.|+|
T Consensus 76 ----d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGaAPV~~all~GD~~TGVTI~~i~p~rFD~G~i 151 (338)
T KOG3082|consen 76 ----DLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGAAPVQRALLNGDTLTGVTIQTIDPKRFDKGPI 151 (338)
T ss_pred ----cccCCCcceEEEeehhccCcHHHHhhCCcceeecChhhcccccCcchHHHHHhcCCcccceEEEEecccccccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchh-HHHHHHHH
Q 048078 206 IAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEE-AVVLHNKV 284 (378)
Q Consensus 206 i~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~-a~~I~~~i 284 (378)
|+|+.+.|++..|+.+|..-++..|+++|.+.+..+..+.....+.+++....||+||+......|.|+++ |.+|. ..
T Consensus 152 lAQ~~l~v~~~~t~~~L~~~Ls~~ga~lLir~l~~l~dql~~~~~Q~~~~~t~tyaPki~~~ea~~s~~e~~a~~I~-~~ 230 (338)
T KOG3082|consen 152 LAQEYLAVNPKETAPELTASLSSLGANLLIRSLYNLNDQLNTVKAQPHGRITDTYAPKIISKEAFISFQESWAKKIT-TE 230 (338)
T ss_pred eecceeccCccccchHHHHHHHhccchhhHHhhccchhhhhccccCcccchhhhcCccccccccccccCHHHHhhhh-hH
Confidence 99999999999999999999999999999999999887655233344444445599999999999999995 55555 46
Q ss_pred hcCCCCCCcEEEEeeeecCCCCcceeEEE-EEE---eeecCCCCCCCCcEEE--EeCCeEEEEeCCCCeEEEEEEecCCC
Q 048078 285 RAFAGWPGTRAKMAVVDDRNGQQSIVELK-IIT---TRVCPNIQTNEVDGIT--FKKDALVVPCGECTALEVLEVQLPGK 358 (378)
Q Consensus 285 RA~~p~pga~~~~~~~~~~~g~~~~~~v~-i~~---~~~~~~~~~~~pG~i~--~~~~~l~V~c~dg~~l~I~~lq~~gk 358 (378)
++...|++..++.-.. .+.....+. +.+ +..+...+...+|++. ..++.+.+.|.+|+++.+.+++.+||
T Consensus 231 ~~~i~~~~~~a~~~l~----~~~~l~~l~~~~~~~~t~~~~~~q~s~~~~~~~h~kk~~l~~~ckngs~l~vl~~~l~~k 306 (338)
T KOG3082|consen 231 DAAIGWESMLATQILN----KSRALLHLVCILNKKLTLYRKDPQHSTSGEDWYHMKKGSLILLCKNGSLLGVLDVVLVGK 306 (338)
T ss_pred hHhhcCcchhHHHHHH----HhhhhhhHHHhhhhhccccccChhhcCcccceeeeccceEEEEecCCCceeeEEEEeccc
Confidence 6666777655432111 000000111 111 1111122345688873 45677999999999999999999999
Q ss_pred CccCHHHHHcccCCC
Q 048078 359 KAVSAAAFWNGLRGQ 373 (378)
Q Consensus 359 k~~~a~~f~~g~~~~ 373 (378)
+.|+|.+|+||+..+
T Consensus 307 k~i~a~~f~ng~~~~ 321 (338)
T KOG3082|consen 307 KGIRASAFNNGLLVE 321 (338)
T ss_pred cceeeecccccccch
Confidence 999999999999874
No 10
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=4.5e-43 Score=335.70 Aligned_cols=232 Identities=24% Similarity=0.333 Sum_probs=197.3
Q ss_pred CCccccCCcceee--ccccccccccceeeEeeecCCCCCCC---------CCCCCC-------CCCCceEEEEecCcchH
Q 048078 1 SNFFSLHSGLVED--EKTKEMNSSLMIRRFFCFKGPATSST---------TPSAFS-------VSRKKPLVFLGSPQVSV 62 (378)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~~~rIvf~Gs~~~a~ 62 (378)
++|+.-|+.||+| |..++-...|+||--|..++.+.+.. .+..+. ..+++||++|+|+ .+
T Consensus 18 t~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~i~l~~~~~~~ki~vl~Sg--~g 95 (280)
T TIGR00655 18 STFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMTWELILADKLKRVAILVSK--ED 95 (280)
T ss_pred HHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCEEEEecCCCCcEEEEEEcC--CC
Confidence 4688999999999 77776678999998888762111100 111111 3568999999999 49
Q ss_pred HHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCC---CCCcHHHHHHHHhcCCcE
Q 048078 63 NVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPE---RAGEDAFLSNLRALQPEL 139 (378)
Q Consensus 63 ~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~---~~~~~~~~~~l~~~~~Dl 139 (378)
.||++|+++...+..+.+|++|+++.+. +..+|+++|||+.++.... ...++++++.|+++++|+
T Consensus 96 ~nl~~l~~~~~~g~l~~~i~~visn~~~------------~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dl 163 (280)
T TIGR00655 96 HCLGDLLWRWYSGELDAEIALVISNHED------------LRSLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDL 163 (280)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEEcChh------------HHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCE
Confidence 9999999998877778999999998764 4668999999964322111 123467789999999999
Q ss_pred EEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEEEEEeCCCCCH
Q 048078 140 CITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKA 219 (378)
Q Consensus 140 iv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~~~~I~~~dt~ 219 (378)
+|+++|++|||+++++.++.++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||.|+.++|.++||.
T Consensus 164 ivlagym~il~~~~l~~~~~~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~lD~GpII~Q~~v~I~~~dt~ 243 (280)
T TIGR00655 164 VVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNV 243 (280)
T ss_pred EEEeCchhhCCHHHHhhccCCEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCCCcCCCeEEEEEEEcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 220 PELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 220 ~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
++|.+|+.+++.+++.++++.+..+..
T Consensus 244 ~~L~~ri~~~E~~~~~~ai~~~~~~~~ 270 (280)
T TIGR00655 244 EDLIRAGRDIEKVVLARAVKLHLEDRV 270 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 999999999999999999999998764
No 11
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3e-43 Score=338.48 Aligned_cols=231 Identities=25% Similarity=0.341 Sum_probs=191.8
Q ss_pred CccccCCcceee--ccccccccccceeeEeee-cCCCCCCCCCC--------------CCCCCCCceEEEEecCcchHHH
Q 048078 2 NFFSLHSGLVED--EKTKEMNSSLMIRRFFCF-KGPATSSTTPS--------------AFSVSRKKPLVFLGSPQVSVNV 64 (378)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~rIvf~Gs~~~a~~~ 64 (378)
++|+.|+.||+| +....+...|.|+--+.. +.|.+-..-.+ --..++++||+||+|+. +++
T Consensus 25 ~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~i~l~~~~~~~ri~vl~Sg~--gsn 102 (286)
T PRK06027 25 NFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMDWRLLDSAERKRVVILVSKE--DHC 102 (286)
T ss_pred HHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCEEEEcccccCcEEEEEEcCC--CCC
Confidence 578899999999 333336666777766665 21211000000 11156899999999995 999
Q ss_pred HHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCC-C--CCCcHHHHHHHHhcCCcEEE
Q 048078 65 LDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTP-E--RAGEDAFLSNLRALQPELCI 141 (378)
Q Consensus 65 L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~-~--~~~~~~~~~~l~~~~~Dliv 141 (378)
|++|+++.+.+..+++|++|+|+++. +..+|+++|||+..+... . ...+.++.+.|+++++|++|
T Consensus 103 l~al~~~~~~~~~~~~i~~visn~~~------------~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv 170 (286)
T PRK06027 103 LGDLLWRWRSGELPVEIAAVISNHDD------------LRSLVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVV 170 (286)
T ss_pred HHHHHHHHHcCCCCcEEEEEEEcChh------------HHHHHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEE
Confidence 99999887776678999999998763 577899999996532111 1 12345678999999999999
Q ss_pred EecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEEEEEeCCCCCHHH
Q 048078 142 TAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAPE 221 (378)
Q Consensus 142 ~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~~~~I~~~dt~~~ 221 (378)
++||++|||+++++.|+.++||+||||||+|||++|++|||.+|++++|+|+|+|++++|+||||+|+.++|.++||.++
T Consensus 171 lagy~~il~~~~l~~~~~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~~D~G~Ii~Q~~v~i~~~dt~~~ 250 (286)
T PRK06027 171 LARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDTAED 250 (286)
T ss_pred EecchhhcCHHHHhhccCCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 222 LLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 222 L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
|.+|+.+++.+++.++++.+..+..
T Consensus 251 L~~ri~~~E~~~~~~ai~~~~~~~~ 275 (286)
T PRK06027 251 LVRAGRDVEKQVLARAVRWHLEDRV 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 9999999999999999999998764
No 12
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=7.1e-43 Score=335.47 Aligned_cols=230 Identities=19% Similarity=0.295 Sum_probs=192.7
Q ss_pred CCccccCCcceee--ccccccccccceeeEeeecCCCCCCCC----------------CCCCCCCCCceEEEEecCcchH
Q 048078 1 SNFFSLHSGLVED--EKTKEMNSSLMIRRFFCFKGPATSSTT----------------PSAFSVSRKKPLVFLGSPQVSV 62 (378)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~rIvf~Gs~~~a~ 62 (378)
++||+.|+.||+| +++..+...|.|+--+..+ +..+.. -+--+..+++||+||||+ ++
T Consensus 25 T~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg--~g 100 (286)
T PRK13011 25 TGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSK--FD 100 (286)
T ss_pred HHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcC--Cc
Confidence 3578999999999 6666777778786555433 221110 000114678999999999 59
Q ss_pred HHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CCCC--CcHHHHHHHHhcCCcE
Q 048078 63 NVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PERA--GEDAFLSNLRALQPEL 139 (378)
Q Consensus 63 ~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~~~--~~~~~~~~l~~~~~Dl 139 (378)
.+|++|+++.+.+..+++|++|+|+.+. +..+|+++|||+.++.. +.+. .+.++.+.|+++++|+
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~~~------------~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl 168 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNHPD------------LEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEESGAEL 168 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECCcc------------HHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhCcCE
Confidence 9999999987777778999999997653 57789999999653211 1111 2445788899999999
Q ss_pred EEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEEEEEeCCCCCH
Q 048078 140 CITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKA 219 (378)
Q Consensus 140 iv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~~~~I~~~dt~ 219 (378)
+|+++|++|||+++++.+++++||+||||||+|||++|++||+.+|+++||+|+|+|++++|+||||+|++++|.++||.
T Consensus 169 ivlagy~~il~~~~l~~~~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q~~v~I~~~dt~ 248 (286)
T PRK13011 169 VVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYSP 248 (286)
T ss_pred EEEeChhhhCCHHHHhhccCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 220 PELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 220 ~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
++|.+|+.+++.+++.++++.+..+..
T Consensus 249 ~~L~~r~~~~E~~~~~~ai~~~~~~~~ 275 (286)
T PRK13011 249 EDLVAKGRDVECLTLARAVKAHIERRV 275 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 999999999999999999999998764
No 13
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=2.3e-42 Score=331.92 Aligned_cols=232 Identities=20% Similarity=0.318 Sum_probs=196.6
Q ss_pred CCccccCCcceee--ccccccccccceeeEeeecCCCCCCCC--CCC--------------CCCCCCceEEEEecCcchH
Q 048078 1 SNFFSLHSGLVED--EKTKEMNSSLMIRRFFCFKGPATSSTT--PSA--------------FSVSRKKPLVFLGSPQVSV 62 (378)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~~~~rIvf~Gs~~~a~ 62 (378)
|+|+.-|+.||+| |+++.....+|||--|...+|...+-. .+. .....++||++|+|+ .+
T Consensus 27 s~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~i~~~~~~~kiavl~Sg--~g 104 (289)
T PRK13010 27 SGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQWAIHPDGQRPKVVIMVSK--FD 104 (289)
T ss_pred HHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCeEEEecCCCCeEEEEEEeC--CC
Confidence 4688899999999 766666778888877775433211000 000 113568999999999 49
Q ss_pred HHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceec-CCCC--CCcHHHHHHHHhcCCcE
Q 048078 63 NVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIF-TPER--AGEDAFLSNLRALQPEL 139 (378)
Q Consensus 63 ~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~-~~~~--~~~~~~~~~l~~~~~Dl 139 (378)
.||++|+++.+.+..+.+|++|+++.+. +.++|+++|||+.++. .+.+ ..+.++++.|+++++|+
T Consensus 105 ~nl~al~~~~~~~~l~~~i~~visn~~~------------~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dl 172 (289)
T PRK13010 105 HCLNDLLYRWRMGELDMDIVGIISNHPD------------LQPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAEL 172 (289)
T ss_pred ccHHHHHHHHHCCCCCcEEEEEEECChh------------HHHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCE
Confidence 9999999998877778999999998763 5799999999965332 1222 23556789999999999
Q ss_pred EEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEEEEEeCCCCCH
Q 048078 140 CITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKA 219 (378)
Q Consensus 140 iv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~~~~I~~~dt~ 219 (378)
+|++||++|||+++++.++.++||+||||||+|||++|++||+.+|++++|+|+|+|++++|+||||+|+.++|.++||.
T Consensus 173 ivlagym~il~~~~l~~~~~~iiNiHpSlLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~~~dt~ 252 (289)
T PRK13010 173 VVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDVERVDHSYSP 252 (289)
T ss_pred EEEehhhhhCCHHHHhhccCCceeeCcccCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEEEEEcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 220 PELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 220 ~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
++|..|...++.+++.++++.+..+..
T Consensus 253 e~L~~r~~~~E~~~l~~ai~~~~~~~~ 279 (289)
T PRK13010 253 EDLVAKGRDVECLTLARAVKAFIEHRV 279 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 999999999999999999999998764
No 14
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=100.00 E-value=1.4e-41 Score=308.65 Aligned_cols=184 Identities=25% Similarity=0.377 Sum_probs=164.3
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCC-----
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAG----- 124 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~----- 124 (378)
+||++|.|+ ++++|+.|+++...+...++|++||++++. +.+.++|+++|||+.. +.+.+.+
T Consensus 1 ~riail~sg--~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~----------~~~~~~A~~~gip~~~-~~~~~~~~~~~~ 67 (190)
T TIGR00639 1 KRIVVLISG--NGSNLQAIIDACKEGKIPASVVLVISNKPD----------AYGLERAAQAGIPTFV-LSLKDFPSREAF 67 (190)
T ss_pred CeEEEEEcC--CChhHHHHHHHHHcCCCCceEEEEEECCcc----------chHHHHHHHcCCCEEE-ECccccCchhhh
Confidence 689999998 478888888776655567899999998754 2568999999999542 3343332
Q ss_pred cHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCC
Q 048078 125 EDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGP 204 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~ 204 (378)
++++.+.|++.++|++|+++|++|||+++++.++.++||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||
T Consensus 68 ~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tGvTih~v~~~~D~G~ 147 (190)
T TIGR00639 68 DQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGP 147 (190)
T ss_pred hHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 205 VIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 205 Ii~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
||.|++++|.++||..+|++|+...+.+++.++++.+..|..
T Consensus 148 Ii~q~~~~i~~~dt~~~L~~k~~~~~~~l~~~~l~~~~~g~~ 189 (190)
T TIGR00639 148 IIAQAKVPILPEDTEETLEQRIHKQEHRIYPLAIAWFAQGRL 189 (190)
T ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999988753
No 15
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=100.00 E-value=5.4e-41 Score=307.26 Aligned_cols=184 Identities=26% Similarity=0.386 Sum_probs=164.1
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCC-----
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAG----- 124 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~----- 124 (378)
|||++|.|+. +.+|++|+++.......++|++|||+++. +.+.++|+++|||+.. +.+.+..
T Consensus 2 ~ki~vl~sg~--gs~~~~ll~~~~~~~~~~~I~~vvs~~~~----------~~~~~~a~~~gIp~~~-~~~~~~~~~~~~ 68 (200)
T PRK05647 2 KRIVVLASGN--GSNLQAIIDACAAGQLPAEIVAVISDRPD----------AYGLERAEAAGIPTFV-LDHKDFPSREAF 68 (200)
T ss_pred ceEEEEEcCC--ChhHHHHHHHHHcCCCCcEEEEEEecCcc----------chHHHHHHHcCCCEEE-ECccccCchhHh
Confidence 7999999984 88888888876555556899999998754 2478999999999431 2233332
Q ss_pred cHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCC
Q 048078 125 EDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGP 204 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~ 204 (378)
++++.+.|+++++|++|+++|++|||+++++.+++|+||+|||+||+|||++|++|||++|++++|+|+|+|++++|+||
T Consensus 69 ~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~tG~Tvh~~~~~~D~G~ 148 (200)
T PRK05647 69 DAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGLHTHEQALEAGVKVHGCTVHFVDEGLDTGP 148 (200)
T ss_pred HHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCccccCCCCccHHHHHHHcCCCeEEEEEEEEcCCCcCCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 205 VIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 205 Ii~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
||.|++++|.++||..+|+.|+..++.+++.++++.+.+|..
T Consensus 149 Ii~q~~~~i~~~dt~~~L~~kl~~~~~~ll~~~i~~l~~g~~ 190 (200)
T PRK05647 149 IIAQAAVPVLAGDTEESLAARVLEQEHRLYPLVVKWFAEGRL 190 (200)
T ss_pred eEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999999998875
No 16
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=100.00 E-value=2.4e-40 Score=303.74 Aligned_cols=184 Identities=23% Similarity=0.382 Sum_probs=165.5
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC----CCCCCcH
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT----PERAGED 126 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~----~~~~~~~ 126 (378)
||++|.|+ ++++|++|+++.+.+..+.+|++|+++.+.. ...++|+++|||+..+-. +++.+++
T Consensus 1 ki~vl~Sg--~Gsn~~al~~~~~~~~l~~~i~~visn~~~~----------~~~~~A~~~gIp~~~~~~~~~~~~~~~~~ 68 (207)
T PLN02331 1 KLAVFVSG--GGSNFRAIHDACLDGRVNGDVVVVVTNKPGC----------GGAEYARENGIPVLVYPKTKGEPDGLSPD 68 (207)
T ss_pred CEEEEEeC--CChhHHHHHHHHHcCCCCeEEEEEEEeCCCC----------hHHHHHHHhCCCEEEeccccCCCcccchH
Confidence 69999999 5999999999887777789999999987643 568999999999542211 2334577
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCc----hHHHHHHH-cCCcEEEEEEEEecCCCC
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGA----APVQRALQ-GGAKETGVSLAFTVRALD 201 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~----~pi~wai~-~g~~~tGvTih~~~~~~D 201 (378)
++++.|+++++|++|+++|++|||+++++.++.++||+||||||+|||+ .|++|+++ +|+++||+|+|+|++++|
T Consensus 69 ~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~~~D 148 (207)
T PLN02331 69 ELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEHYD 148 (207)
T ss_pred HHHHHHHhcCCCEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECCCCC
Confidence 8899999999999999999999999999999999999999999999996 79999865 899999999999999999
Q ss_pred CCCeeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 202 AGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 202 ~G~Ii~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
+||||+|+.++|.++||..+|.+|+..++.+++.++|+.+..|..
T Consensus 149 ~G~Ii~Q~~~~I~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~ 193 (207)
T PLN02331 149 TGRILAQRVVPVLATDTPEELAARVLHEEHQLYVEVVAALCEERI 193 (207)
T ss_pred CCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999999999998764
No 17
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=100.00 E-value=2.7e-41 Score=305.14 Aligned_cols=175 Identities=40% Similarity=0.711 Sum_probs=140.5
Q ss_pred ceEEEEecC--cchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCcee----cCCCCC
Q 048078 50 KPLVFLGSP--QVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLI----FTPERA 123 (378)
Q Consensus 50 ~rIvf~Gs~--~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v----~~~~~~ 123 (378)
|||+||||+ .+...+|++|.+.. ..+++++|||+++++.+ ...|.+.+++...+ +.+.+.
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~----~~~~iv~Vit~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARG----HNVEIVLVITNPDKPRG----------RSRAIKNGIPAQVADEKNFQPRSE 66 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTS----SEEEEEEEEESSTTTHH----------HHHHHHTTHHEEEHHGGGSSSHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCC----CCceEEEEecccccccc----------ccccccCCCCEEeccccCCCchHh
Confidence 799999555 45555566665532 23679999999988654 46777777775422 122334
Q ss_pred CcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCC
Q 048078 124 GEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAG 203 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G 203 (378)
+++++.+.+++.+||++|+++|++|||+++++.+++|+||+|||+||+|||++|++|||++|++++|+|+|+|++++|+|
T Consensus 67 ~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~~p~~~ai~~g~~~~G~Tvh~~~~~~D~G 146 (181)
T PF00551_consen 67 NDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSLLPKYRGASPIQWAILNGEKETGVTVHFMDEGLDAG 146 (181)
T ss_dssp HHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESSSTTTTBSSTHHHHHHHHTSSEEEEEEEEE-SSTTTS
T ss_pred hhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeecCCccCCCcchhhhhhcCCcceeeeEEEEecccCcCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 048078 204 PVIAREKMEVDDQIKAPELLVLLFSEGSELLIREL 238 (378)
Q Consensus 204 ~Ii~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l 238 (378)
+||.|+.++|.++||..+|++|+.+++.+++.+++
T Consensus 147 ~Ii~q~~~~i~~~dt~~~l~~r~~~~~~~~l~~ai 181 (181)
T PF00551_consen 147 PIIAQKKFPIEPDDTAESLYERLAEAEAELLVEAI 181 (181)
T ss_dssp EEEEEEEEE--TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999975
No 18
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-39 Score=286.41 Aligned_cols=184 Identities=26% Similarity=0.381 Sum_probs=169.1
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCC-----CC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPER-----AG 124 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~-----~~ 124 (378)
+||++|.|+ ++++|++|+++...+..+.+|++|+++.+.. ...++|+++|||+.. +.... ..
T Consensus 1 ~ki~VlaSG--~GSNlqaiida~~~~~~~a~i~~Visd~~~A----------~~lerA~~~gIpt~~-~~~k~~~~r~~~ 67 (200)
T COG0299 1 KKIAVLASG--NGSNLQAIIDAIKGGKLDAEIVAVISDKADA----------YALERAAKAGIPTVV-LDRKEFPSREAF 67 (200)
T ss_pred CeEEEEEeC--CcccHHHHHHHHhcCCCCcEEEEEEeCCCCC----------HHHHHHHHcCCCEEE-eccccCCCHHHH
Confidence 589999999 5999999999987666678999999988653 678999999999753 33322 24
Q ss_pred cHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCC
Q 048078 125 EDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGP 204 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~ 204 (378)
+.++.+.|++.+||++|++|||+||.+.|++.|+.++||+||||||.|.|.+.+..|+..|++++|||||++++++|+||
T Consensus 68 d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~Gp 147 (200)
T COG0299 68 DRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGP 147 (200)
T ss_pred HHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCC
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 205 VIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 205 Ii~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
||.|..+||.++||.++|.+|+.+.+.++++++++.+.+|+.
T Consensus 148 II~Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g~~ 189 (200)
T COG0299 148 IIAQAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEGRL 189 (200)
T ss_pred eEEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999875
No 19
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=310.30 Aligned_cols=294 Identities=24% Similarity=0.360 Sum_probs=258.6
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCC-----C
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERA-----G 124 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~-----~ 124 (378)
|||+++|..-|+..+...|.+. +|||++|+|-||+. || ..++.--|++-|+| |+.+.+. .
T Consensus 1 mkiaiigqs~fg~~vy~~lrk~------gheiv~vftipdk~-g~-----~d~l~~ea~kdgvp---v~k~srwr~k~~~ 65 (881)
T KOG2452|consen 1 MKIAVIGQSLFGQEVYCHLRKE------GHEVVGVFTVPDKD-GK-----ADPLGLEAEKDGVP---VFKYSRWRAKAQA 65 (881)
T ss_pred CeeEEechhhhhHHHHHHHHhc------CceEEEEEEecCCC-CC-----cCcccccccccCcc---eechhhhhhhccc
Confidence 7999999999999999999875 79999999988763 43 35677788999999 7776543 2
Q ss_pred cHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCC
Q 048078 125 EDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGP 204 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~ 204 (378)
-+++++..+.+++++-|+-.+.++||-++++.|+++.|-+|||+||+.||++.|+|.++.|+++.|.|+++.|+++|+||
T Consensus 66 lp~~~~~y~~~gaelnvlpfcsqfip~ei~~ap~~~siiyhps~lp~hrgasainwtli~gd~~~g~sifwaddgldtg~ 145 (881)
T KOG2452|consen 66 LPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGASAINWTLIHGDKKGGFSIFWADDGLDTGD 145 (881)
T ss_pred cHHHHHHHHhhcccccccchhhhccchhhcccccCCceeeccccCccccCccccceEEEeccccCceEEEeecCCccccc
Confidence 36788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEeCCCCCHHHHHHH-HHHHHHHHHHHHHHHhHcCCCCcccccCCCCCccccCCCCcccccCCCchhHHHHHHH
Q 048078 205 VIAREKMEVDDQIKAPELLVL-LFSEGSELLIRELPSILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNK 283 (378)
Q Consensus 205 Ii~Q~~~~I~~~dt~~~L~~k-l~~~~~~ll~~~l~~l~~g~~~~~~~~Q~~~~~ty~~k~~~~d~~Idw~~~a~~I~~~ 283 (378)
|++|+++.+.++||..+||+| ++..|...+.+.++.|..|+. +..+|.++.+||-|-++++-.+|||++++++|+|+
T Consensus 146 ~llqk~c~v~~~dt~~tly~rfl~p~gi~~v~~~v~lia~gka--pr~~qpeegasye~~~k~e~a~i~w~~~~~~~hn~ 223 (881)
T KOG2452|consen 146 LLLQKECEVLPDDTVSTLYNRFLFPEGIKGVVQAVRLIAEGKA--PRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNW 223 (881)
T ss_pred hhhhhhcccCCCccHHHHHHhhcChHHHHHHHHHHHHHhcCCC--CCCCCcccCCcccccccchhhcCCccchHHHHHHH
Confidence 999999999999999999998 789999999999999999998 67899999999999999999999999999999999
Q ss_pred HhcCCCCCCcEEEEeeeecCCCCcceeEEEEEEeeecCC-----------CCCCCCcEEEEeCCeEEEEeCCCCeEEEEE
Q 048078 284 VRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPN-----------IQTNEVDGITFKKDALVVPCGECTALEVLE 352 (378)
Q Consensus 284 iRA~~p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~-----------~~~~~pG~i~~~~~~l~V~c~dg~~l~I~~ 352 (378)
||+-+.-||||+... ++ ++..+...+... .....||. +++.+++.--.||.|+.+..
T Consensus 224 irgndkvpgaw~~~~------~~----k~sff~s~l~~~g~~~~~da~~i~~~~~pg~--v~~~gl~l~g~d~~~~~v~~ 291 (881)
T KOG2452|consen 224 IRGNDKVPGAWTEAC------EQ----KLTFFNSTLNTSGLVPEGDALPIPGAHRPGV--VTKAGLILFGNDDKMLLVKN 291 (881)
T ss_pred hhcCCCCCcHHHHhh------cc----eeeeeccccCCCCCCCCCCcccccccCCCce--eeccceEEEcCCCcEEEEEe
Confidence 999999999998764 44 454444332211 11234773 46778888888999999999
Q ss_pred EecCCCCccCHHHHHcccCC
Q 048078 353 VQLPGKKAVSAAAFWNGLRG 372 (378)
Q Consensus 353 lq~~gkk~~~a~~f~~g~~~ 372 (378)
+|.+..|.+.|+.|..|..-
T Consensus 292 i~~~d~k~i~as~~~~ga~~ 311 (881)
T KOG2452|consen 292 IQLEDGKMILASNFFKGAAS 311 (881)
T ss_pred EEecCCcEEehhhhccccce
Confidence 99999999999999999853
No 20
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=253.03 Aligned_cols=188 Identities=24% Similarity=0.384 Sum_probs=170.3
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCC--CceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC----C
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDS--IFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT----P 120 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~--~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~----~ 120 (378)
.++.|++++-|+ ++.+|++|+++...+.. +.+|+.|+++.....| .+.|+++|||+.++.+ .
T Consensus 4 ~~r~rvavliSG--tGsNlqaLid~~r~~~l~~~a~VvlviSnk~~~~G----------L~rA~~~gIPt~vip~k~~a~ 71 (206)
T KOG3076|consen 4 WRRARVAVLISG--TGSNLQALIDATRDGSLGPNADVVLVISNKKGVYG----------LERAADAGIPTLVIPHKRFAS 71 (206)
T ss_pred ccceeEEEEEec--CchhHHHHHHhhcCCCcCCCceEEEEEeccccchh----------hhHHHHCCCCEEEeccccccc
Confidence 457789999998 69999999999888776 7899999998865544 6899999999864433 1
Q ss_pred CCCCcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCC
Q 048078 121 ERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRAL 200 (378)
Q Consensus 121 ~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~ 200 (378)
....|.++.+.|.++++|+++++|||+||+.+|+..++..+||+||||||.|.|.+++..|+..|.+.+|+|+||++|++
T Consensus 72 R~~~d~eL~~~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG~~a~k~Aleagv~~~GctvHfV~Eev 151 (206)
T KOG3076|consen 72 REKYDNELAEVLLELGTDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKGLHAIKQALEAGVKLSGCTVHFVIEEV 151 (206)
T ss_pred cccCcHHHHHHHHHhCCCEEEehhhHHHcCHHHHhhcccceEecccccccccCCchHHHHHHHhccccccceEEEehhhc
Confidence 22347889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCCC
Q 048078 201 DAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGSA 246 (378)
Q Consensus 201 D~G~Ii~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~~ 246 (378)
|+|+||.|..++|.++||.++|.+|+..++..++++++..+.+++.
T Consensus 152 D~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH~~~~~Ai~~v~~~~~ 197 (206)
T KOG3076|consen 152 DTGPIIAQMAVPVIPGDTLESLEQRVHDAEHKAFVEAIKAVCEGRV 197 (206)
T ss_pred cCCCceEEEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998775
No 21
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=244.84 Aligned_cols=231 Identities=22% Similarity=0.322 Sum_probs=195.7
Q ss_pred CCccccCCcceee--ccccccccccceeeEeeecCCCCCC--------CCCCCCC-------CCCCceEEEEecCcchHH
Q 048078 1 SNFFSLHSGLVED--EKTKEMNSSLMIRRFFCFKGPATSS--------TTPSAFS-------VSRKKPLVFLGSPQVSVN 63 (378)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~-------~~~~~rIvf~Gs~~~a~~ 63 (378)
|||+--|++||+| |.+++-+-+||||.-|...+-..+. +.+..++ .+.++||++|.|.+ ..
T Consensus 25 s~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~~~~~~~~~ri~i~VSK~--~H 102 (287)
T COG0788 25 SGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWRLHDAAQRKRIAILVSKE--DH 102 (287)
T ss_pred HHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeEEeccccCceEEEEEech--HH
Confidence 5788899999998 9999989999999999886432110 0122222 46789999999985 78
Q ss_pred HHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCC---CCcHHHHHHHHhcCCcEE
Q 048078 64 VLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPER---AGEDAFLSNLRALQPELC 140 (378)
Q Consensus 64 ~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~---~~~~~~~~~l~~~~~Dli 140 (378)
||..|+=....++...+|++||++.+. ++..++.+|||++++..... ..++.+++.+++.++|++
T Consensus 103 CL~DLL~r~~~g~L~~eI~~VIsNH~d------------l~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~Dlv 170 (287)
T COG0788 103 CLGDLLYRWRIGELPAEIVAVISNHDD------------LRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLV 170 (287)
T ss_pred HHHHHHHHHhcCCcCCceEEEEcCCHH------------HHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEE
Confidence 888887443445678999999998874 78999999999875532211 124567789999999999
Q ss_pred EEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCeeEEEEEEeCCCCCHH
Q 048078 141 ITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVIAREKMEVDDQIKAP 220 (378)
Q Consensus 141 v~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q~~~~I~~~dt~~ 220 (378)
|++-||+||++++...+...+||||.|+||.|.|+.|.+.|..+|.+-.|+|.|++++.+|.||||.|..++++..+|.+
T Consensus 171 VLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT~dLDeGPIIeQdv~rV~H~~s~e 250 (287)
T COG0788 171 VLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVTADLDEGPIIEQDVIRVDHAYSVE 250 (287)
T ss_pred eehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeEeeeeeeeccCCCCCCCceeeeeeecCccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcCC
Q 048078 221 ELLVLLFSEGSELLIRELPSILDGS 245 (378)
Q Consensus 221 ~L~~kl~~~~~~ll~~~l~~l~~g~ 245 (378)
++..+=...+...|.+++..-...+
T Consensus 251 d~~~~GrDvE~~VLARAv~~hle~R 275 (287)
T COG0788 251 DLVRAGRDVEKLVLARAVKAHLEDR 275 (287)
T ss_pred HHHHhCCcHHHHHHHHHHHHHhcce
Confidence 9999988899999999988776554
No 22
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=99.89 E-value=3.8e-23 Score=168.50 Aligned_cols=98 Identities=34% Similarity=0.558 Sum_probs=81.0
Q ss_pred CCCcccccCCCchhHHHHHHHHhcCCCCCCcEEEEeeeecCCCCcceeEEEEEEeeecCCCCCCC-CcEE-EEeCCeEEE
Q 048078 263 KITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVVDDRNGQQSIVELKIITTRVCPNIQTNE-VDGI-TFKKDALVV 340 (378)
Q Consensus 263 k~~~~d~~Idw~~~a~~I~~~iRA~~p~pga~~~~~~~~~~~g~~~~~~v~i~~~~~~~~~~~~~-pG~i-~~~~~~l~V 340 (378)
|++++|+.|||+++|++|+|+|||++|||||++++. |+ +++|++++..+...... ||+| ..++++++|
T Consensus 1 KI~~~d~~Idw~~~A~~I~~~vRal~p~pga~~~~~------~~----~i~i~~~~~~~~~~~~~~pG~i~~~~~~~l~V 70 (100)
T PF02911_consen 1 KITKEDGRIDWNQSAEEIYNLVRALNPYPGAFTTFN------GK----RIKILKAEPLEDDSSSNPPGTIVYIDKNGLLV 70 (100)
T ss_dssp ---GGGGB--TTSBHHHHHHHHHHTTTTT-EEEEET------TE----EEEEEEEEEEETTSSSSSTTBEEEEETTEEEE
T ss_pred CCChHHeEECCCCCHHHHHHHHhCCCCCCCEEEeeC------Ce----EEEEEeeeecccccccccCceEEEEcCCEEEE
Confidence 689999999999999999999999999999999985 54 89999998876654333 9988 667889999
Q ss_pred EeCCCCeEEEEEEecCCCCccCHHHHHcccC
Q 048078 341 PCGECTALEVLEVQLPGKKAVSAAAFWNGLR 371 (378)
Q Consensus 341 ~c~dg~~l~I~~lq~~gkk~~~a~~f~~g~~ 371 (378)
+|+|| +|+|.+||++||+.|+|.+|+||+|
T Consensus 71 ~~~dg-~l~i~~~q~~gkk~~~a~~f~~g~r 100 (100)
T PF02911_consen 71 ACGDG-ALRIRELQPEGKKPMSAKDFLNGYR 100 (100)
T ss_dssp ETSBS-EEEEEEEEETTS-EEEHHHHHHHH-
T ss_pred EECCc-EEEEEEEEcCCCCEEeHHHHHccCC
Confidence 99998 7999999999999999999999986
No 23
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.57 E-value=0.039 Score=45.44 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=54.0
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFL 129 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~ 129 (378)
|||+++|.+.++...+..+.+.. ..+++++|+...+ ....++++++|++ .+.. +.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~----~~~~v~~v~d~~~-----------~~~~~~~~~~~~~---~~~~-------~~ 55 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS----PDFEVVAVCDPDP-----------ERAEAFAEKYGIP---VYTD-------LE 55 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT----TTEEEEEEECSSH-----------HHHHHHHHHTTSE---EESS-------HH
T ss_pred CEEEEECCcHHHHHHHHHHHhcC----CCcEEEEEEeCCH-----------HHHHHHHHHhccc---chhH-------HH
Confidence 69999999999888998988763 3688888875432 2467789999999 5531 33
Q ss_pred HHHHhcCCcEEEEecC
Q 048078 130 SNLRALQPELCITAAY 145 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~ 145 (378)
+.+...++|+++++.-
T Consensus 56 ~ll~~~~~D~V~I~tp 71 (120)
T PF01408_consen 56 ELLADEDVDAVIIATP 71 (120)
T ss_dssp HHHHHTTESEEEEESS
T ss_pred HHHHhhcCCEEEEecC
Confidence 5566678999998874
No 24
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.87 E-value=0.46 Score=46.45 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=50.1
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
+++||+++|++.++...+..|.+. ..+++++|+...+.. .-.++|+++|++ ... +.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es----------~gla~A~~~Gi~---~~~-~~----- 58 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPES----------DGLARARRLGVA---TSA-EG----- 58 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhh----------HHHHHHHHcCCC---ccc-CC-----
Confidence 479999999999888888888763 368999988643321 235779999999 321 11
Q ss_pred HHHHHHh---cCCcEEEEecC
Q 048078 128 FLSNLRA---LQPELCITAAY 145 (378)
Q Consensus 128 ~~~~l~~---~~~Dliv~~~~ 145 (378)
+.+.++. .++|+++.+.-
T Consensus 59 ie~LL~~~~~~dIDiVf~AT~ 79 (302)
T PRK08300 59 IDGLLAMPEFDDIDIVFDATS 79 (302)
T ss_pred HHHHHhCcCCCCCCEEEECCC
Confidence 1223334 46888887663
No 25
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=91.72 E-value=0.35 Score=48.16 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=38.7
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFP 113 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp 113 (378)
.++||+++|+ .|+...++++.+.. .++++++|+....+ ..+++|+++|+|
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~----~~~eLvaV~d~~~e-----------rA~~~A~~~gi~ 51 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAP----ERFELAGILAQGSE-----------RSRALAHRLGVP 51 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCC----CCcEEEEEEcCCHH-----------HHHHHHHHhCCC
Confidence 5799999999 68777778876641 15899999875432 367899999999
No 26
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=91.20 E-value=0.86 Score=45.00 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=30.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
++||+++|.+.++...+++|.+. .++++++|+...+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCc
Confidence 69999999999998888888764 3699999998654
No 27
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=90.06 E-value=1 Score=43.76 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=49.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
|+||+++|++.++...+..|++. .++++++|+...+.. .-.++|+++|++ ... + + .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es----------~~la~A~~~Gi~---~~~-~---~--~ 56 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPES----------DGLARARELGVK---TSA-E---G--V 56 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCccc----------HHHHHHHHCCCC---EEE-C---C--H
Confidence 58999999998887777888763 368999887643321 124689999999 322 1 1 1
Q ss_pred HHHHHhcCCcEEEEecCC
Q 048078 129 LSNLRALQPELCITAAYG 146 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~ 146 (378)
.+.+++.++|+++.+.-.
T Consensus 57 e~ll~~~dIDaV~iaTp~ 74 (285)
T TIGR03215 57 DGLLANPDIDIVFDATSA 74 (285)
T ss_pred HHHhcCCCCCEEEECCCc
Confidence 233445578888876643
No 28
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.81 E-value=1.6 Score=43.18 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
.+..+|+.|+|.+.++....++|.... +++++|++|.+..- ...+++|+++|+|-. ++..
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~~p---~s~~~Ivava~~s~-----------~~A~~fAq~~~~~~~------k~y~ 62 (351)
T KOG2741|consen 3 DSATIRWGIVGAGRIARDFVRALHTLP---ESNHQIVAVADPSL-----------ERAKEFAQRHNIPNP------KAYG 62 (351)
T ss_pred CCceeEEEEeehhHHHHHHHHHhccCc---ccCcEEEEEecccH-----------HHHHHHHHhcCCCCC------cccc
Confidence 356899999999999999989887653 35899999987632 246899999999611 1211
Q ss_pred HHHHHHHHhcCCcEEEE
Q 048078 126 DAFLSNLRALQPELCIT 142 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~ 142 (378)
...+.+++..+|++++
T Consensus 63 -syEeLakd~~vDvVyi 78 (351)
T KOG2741|consen 63 -SYEELAKDPEVDVVYI 78 (351)
T ss_pred -CHHHHhcCCCcCEEEe
Confidence 2335566778898654
No 29
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.90 E-value=1.4 Score=34.58 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=48.0
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHH
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~ 130 (378)
||+|+|++..+...++.|+++.. ...+|..+....+ ..+.++++++++. +... +.. +
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~-----------~~~~~~~~~~~~~---~~~~---~~~---~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSP-----------EKAAELAKEYGVQ---ATAD---DNE---E 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSH-----------HHHHHHHHHCTTE---EESE---EHH---H
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcH-----------HHHHHHHHhhccc---cccC---ChH---H
Confidence 79999999999999999998631 1266654433322 2478889999876 3321 122 2
Q ss_pred HHHhcCCcEEEEecCCCcCCh
Q 048078 131 NLRALQPELCITAAYGNILPS 151 (378)
Q Consensus 131 ~l~~~~~Dliv~~~~~~ilp~ 151 (378)
.++ +.|++|++--.+.+++
T Consensus 58 ~~~--~advvilav~p~~~~~ 76 (96)
T PF03807_consen 58 AAQ--EADVVILAVKPQQLPE 76 (96)
T ss_dssp HHH--HTSEEEE-S-GGGHHH
T ss_pred hhc--cCCEEEEEECHHHHHH
Confidence 332 6899988765555544
No 30
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=85.45 E-value=5.8 Score=34.86 Aligned_cols=101 Identities=16% Similarity=0.281 Sum_probs=57.5
Q ss_pred CceEEEEecC--cchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCC-hHH----HHHHHHCCCCCceecCCC
Q 048078 49 KKPLVFLGSP--QVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLP-SPV----AQYALDRGFPADLIFTPE 121 (378)
Q Consensus 49 ~~rIvf~Gs~--~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~-~~v----~~~A~~~gIp~~~v~~~~ 121 (378)
.+||+|+|-. ....+.+.. +.. .+.+ +-+++++. . ...+ ..+ ++.+.++|-.+. +. +
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~-~~~-----~g~~-~~~~~P~~-~-----~~~~~~~~~~~~~~~~~~~g~~i~-~~--~ 65 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIEL-LAK-----FGME-VVLIAPEG-L-----RYPPDPEVLEKAKKNAKKNGGKIT-IT--D 65 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHH-HHH-----TTSE-EEEESSGG-G-----GGSHHHHHHHHHHHHHHHHTTEEE-EE--S
T ss_pred CCEEEEECCCCChHHHHHHHH-HHH-----cCCE-EEEECCCc-c-----cCCCCHHHHHHHHHHHHHhCCCeE-EE--e
Confidence 5799999952 222333333 332 2566 44444332 1 0001 123 355666676632 21 2
Q ss_pred CCCcHHHHHHHHhcCCcEEEEecCC----------------CcCChhhhcCCCCceEEEccCCCCCCCC
Q 048078 122 RAGEDAFLSNLRALQPELCITAAYG----------------NILPSKFLNIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 122 ~~~~~~~~~~l~~~~~Dliv~~~~~----------------~ilp~~il~~~~~g~iNiHpSlLP~yRG 174 (378)
+ +.+.+ .+.|++..-.|. +.+..++++..+..++=+|| ||.+||
T Consensus 66 ~-----~~e~l--~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~--LP~~R~ 125 (158)
T PF00185_consen 66 D-----IEEAL--KGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHP--LPANRG 125 (158)
T ss_dssp S-----HHHHH--TT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES--SS--BT
T ss_pred C-----HHHhc--CCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC--CCCCCC
Confidence 2 22344 469999999998 78999999988778999998 688888
No 31
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=85.42 E-value=4.8 Score=42.35 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=72.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.|++++|.+.........|.+. .+.++++++|..... .......+..+-... + .++.++-+.
T Consensus 328 GKrvai~~gg~~~~~~~~~l~~E-----lGmevv~~~t~~~~~---------~d~~~~~~~~~~~~~-~--i~D~~~~e~ 390 (513)
T TIGR01861 328 GKKVCLWPGGSKLWHWAHVIEEE-----MGLKVVSVYSKFGHQ---------GDMEKGVARCGEGAL-A--IDDPNELEG 390 (513)
T ss_pred CCEEEEECCchHHHHHHHHHHHh-----CCCEEEEEeccCCCH---------HHHHHHHHhCCCCcE-E--ecCCCHHHH
Confidence 56899998887777777788742 479999998864211 112233333333221 2 234455666
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC---CCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS---LLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS---lLP~yRG~~pi~wai~~ 184 (378)
++.+++.+||++|.-+..+.+-.++ ...++..|.. ..=-|+|.--+-..|.|
T Consensus 391 ~~~l~~~~~Dllig~s~~~~~A~k~----gIP~ld~~~~~~~p~~GY~G~~~l~~~I~n 445 (513)
T TIGR01861 391 LEAMEMLKPDIILTGKRPGEVSKKM----RVPYLNAHAYHNGPYKGFEGWVRFARDIYN 445 (513)
T ss_pred HHHHHhcCCCEEEecCccchhHhhc----CCCEEEccCCCCCCcchHhhHHHHHHHHHH
Confidence 7788999999999998887665542 3335555544 33378887655555555
No 32
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=84.63 E-value=3 Score=40.57 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=49.2
Q ss_pred CCceEEEEecCcchHH-HHHHHHHccCCCCCC-ceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 48 RKKPLVFLGSPQVSVN-VLDALFNASSSPDSI-FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~-~L~~L~~~~~~~~~~-~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
+++||+++|.+.++.. .+..+.+.. + +++++|+...+. ..+++|+++|++ . .+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~-----~~~~~vav~d~~~~-----------~a~~~a~~~~~~-~-~~~------ 57 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALG-----GGLELVAVVDRDPE-----------RAEAFAEEFGIA-K-AYT------ 57 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCC-----CceEEEEEecCCHH-----------HHHHHHHHcCCC-c-ccC------
Confidence 5899999999866654 556665532 2 588888764432 468999999998 1 221
Q ss_pred HHHHHHHHhcCCcEEEEec
Q 048078 126 DAFLSNLRALQPELCITAA 144 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~ 144 (378)
++.+.|+..++|+++++.
T Consensus 58 -~~~~ll~~~~iD~V~Iat 75 (342)
T COG0673 58 -DLEELLADPDIDAVYIAT 75 (342)
T ss_pred -CHHHHhcCCCCCEEEEcC
Confidence 234556667799998765
No 33
>PLN02342 ornithine carbamoyltransferase
Probab=83.48 E-value=13 Score=37.20 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCC-CCceecCCCCCCc
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGF-PADLIFTPERAGE 125 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gI-p~~~v~~~~~~~~ 125 (378)
-..+||+|+|...- ++..|+.... ..+.++. ++.|+.-. .+..+.+.|++.|. .+. +. .
T Consensus 192 l~glkva~vGD~~n---va~Sli~~~~--~~G~~v~--~~~P~~~~------~~~~~~~~a~~~g~~~~~-~~--~---- 251 (348)
T PLN02342 192 LEGTKVVYVGDGNN---IVHSWLLLAA--VLPFHFV--CACPKGYE------PDAKTVEKARAAGISKIE-IT--N---- 251 (348)
T ss_pred cCCCEEEEECCCch---hHHHHHHHHH--HcCCEEE--EECCcccc------cCHHHHHHHHHhCCCcEE-EE--c----
Confidence 34689999997643 3333332211 1256643 33333210 12346667777765 311 11 1
Q ss_pred HHHHHHHHhcCCcEEEEecC-----------------CCcCChhhhcCCCCceEEEccCCCCCCCCc
Q 048078 126 DAFLSNLRALQPELCITAAY-----------------GNILPSKFLNIPPMGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~il~~~~~g~iNiHpSlLP~yRG~ 175 (378)
++.+.+ .++|++.+-.| .+.|.+++++..+..++-+|| ||.+||.
T Consensus 252 -d~~eav--~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp--LP~~rg~ 313 (348)
T PLN02342 252 -DPAEAV--KGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC--LPAERGV 313 (348)
T ss_pred -CHHHHh--CCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC--CCcCCCc
Confidence 112233 36777776543 256777888877778999999 7888873
No 34
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=81.60 E-value=6.3 Score=40.68 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=72.1
Q ss_pred CCCceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 47 SRKKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 47 ~~~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
..+.||+++|| |.++..+|+-+.+.. ..++|+++.+...- .-+.+.|+++.-.+.++... ...
T Consensus 55 ~~~KkI~ILGSTGSIGtqtLdVI~~~p----d~f~vvaLaag~Ni----------~lL~~q~~~f~p~~v~v~d~--~~~ 118 (454)
T PLN02696 55 DGPKPISLLGSTGSIGTQTLDIVAENP----DKFKVVALAAGSNV----------TLLADQVRKFKPKLVAVRNE--SLV 118 (454)
T ss_pred CCccEEEEecCCcHhhHHHHHHHHhCc----cccEEEEEECCCCH----------HHHHHHHHHhCCCEEEEcCH--HHH
Confidence 34579999998 889999998776642 35999998775532 24677788888765433221 011
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCC-CceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCC--CCC
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPP-MGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRA--LDA 202 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~-~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~--~D~ 202 (378)
.++.+.|.....+.-|..|-.-++ ++.+.+. .-++|. +-.+-|..|...||..|. +|-..+++ +=.
T Consensus 119 ~~l~~~l~~~~~~~~vl~G~egl~--~la~~~evDiVV~A----IvG~aGL~pTl~AIkaGK-----~VALANKESLV~a 187 (454)
T PLN02696 119 DELKEALADLDDKPEIIPGEEGIV--EVARHPEAVTVVTG----IVGCAGLKPTVAAIEAGK-----DIALANKETLIAG 187 (454)
T ss_pred HHHHHhhcCCCCCcEEEECHHHHH--HHHcCCCCCEEEEe----CccccchHHHHHHHHCCC-----cEEEecHHHHHhh
Confidence 112222211001222222211111 2222221 112222 234568889999999985 34444444 556
Q ss_pred CCeeEE
Q 048078 203 GPVIAR 208 (378)
Q Consensus 203 G~Ii~Q 208 (378)
|++|.+
T Consensus 188 G~lI~~ 193 (454)
T PLN02696 188 GPFVLP 193 (454)
T ss_pred HHHHHH
Confidence 666643
No 35
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=81.54 E-value=3.1 Score=38.79 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=51.8
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHH-HHHCCCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQY-ALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~-A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
|+|+++|-+.|+..+.+.|.+. +++++.|..++.. +.++ +.+.+.. ++.- +..+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~------------~~~~~~~~~~~~---~v~g-d~t~~~~ 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEER------------VEEFLADELDTH---VVIG-DATDEDV 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHH------------HHHHhhhhcceE---EEEe-cCCCHHH
Confidence 7899999999999999999875 6899888876542 3442 3245555 3332 3446667
Q ss_pred HHHHHhcCCcEEEEec
Q 048078 129 LSNLRALQPELCITAA 144 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~ 144 (378)
++.+--.++|.++++.
T Consensus 59 L~~agi~~aD~vva~t 74 (225)
T COG0569 59 LEEAGIDDADAVVAAT 74 (225)
T ss_pred HHhcCCCcCCEEEEee
Confidence 7666667899988765
No 36
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=80.87 E-value=14 Score=38.32 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=73.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.|++++|-+.......+.|.+. +.+++.|.|......- .+....-+.+.+.+.|.+...+. ++.+-.++
T Consensus 314 GKrvai~Gdp~~~i~LarfL~el------GmevV~vgt~~~~~~~--~~~d~~~l~~~~~~~~~~~~viv--e~~D~~el 383 (457)
T CHL00073 314 GKSVFFMGDNLLEISLARFLIRC------GMIVYEIGIPYMDKRY--QAAELALLEDTCRKMNVPMPRIV--EKPDNYNQ 383 (457)
T ss_pred CCEEEEECCCcHHHHHHHHHHHC------CCEEEEEEeCCCChhh--hHHHHHHHHHHhhhcCCCCcEEE--eCCCHHHH
Confidence 46889999888889888988874 7999999876432110 00011124455556776533233 23345677
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHH
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQ 183 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~ 183 (378)
.+.+++.+||++|.-. +.=+|-.-.-.+-+--+.....+.-.|+|+.-+..-+.
T Consensus 384 ~~~i~~~~pDLlIgG~-~~~~Pl~~~G~p~~d~~~~~~~pi~Gy~ga~~L~e~~~ 437 (457)
T CHL00073 384 IQRIRELQPDLAITGM-AHANPLEARGINTKWSVEFTFAQIHGFTNARDVLELVT 437 (457)
T ss_pred HHHHhhCCCCEEEccc-cccCchhhcCCcceEecceEEEccccHhhHHHHHHHHH
Confidence 8889999999998642 33333222212222245555556667899765554433
No 37
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=80.78 E-value=4.5 Score=41.37 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
...||++.|.+.......+.|.+. +.+++.|++..+.+.- ...+....+..+++...+.. .+..+
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~------G~~v~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~---~d~~e 362 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEM------GAEPVAAVTGTDNPPF------EKRMELLASLEGIPAEVVFV---GDLWD 362 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHc------CCcceEEEEcCCCchh------HHHHHHhhhhcCCCceEEEC---CCHHH
Confidence 357999999887777777777764 6888888875443211 11122233335555443332 23467
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCC-------CCceEEEccCCCCCCCCchHHHHHHHc
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIP-------PMGTVNIHPSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~-------~~g~iNiHpSlLP~yRG~~pi~wai~~ 184 (378)
+.+.+++.+||+++.-++.+-+-.+ +..+ -+.-++.|...+=-|+|..-+-.-|.|
T Consensus 363 l~~~i~~~~pdliig~~~~~~~a~~-~~ip~i~~~~P~~d~~~~~~~~~~Gy~G~~~l~~~i~n 425 (428)
T cd01965 363 LESLAKEEPVDLLIGNSHGRYLARD-LGIPLVRVGFPIFDRLGLHRRPYVGYRGALNLLEEIAN 425 (428)
T ss_pred HHHHhhccCCCEEEECchhHHHHHh-cCCCEEEecCCchhccccccCCceecHHHHHHHHHHHH
Confidence 7788999999999998877655443 2221 112245666667788998766655554
No 38
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=80.40 E-value=2.3 Score=35.27 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=49.3
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCC-C-----CC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTP-E-----RA 123 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~-~-----~~ 123 (378)
.||+++|+++++..+++++.+. +++.++|.++++... .-...|.+. ++.+ . -+
T Consensus 3 kkvLIanrGeia~r~~ra~r~~------Gi~tv~v~s~~d~~s---------~~~~~ad~~------~~~~~~~~~~~yl 61 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALREL------GIETVAVNSNPDTVS---------THVDMADEA------YFEPPGPSPESYL 61 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHT------TSEEEEEEEGGGTTG---------HHHHHSSEE------EEEESSSGGGTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHh------CCcceeccCchhccc---------ccccccccc------eecCcchhhhhhc
Confidence 5899999999999999999885 799999999887532 222222221 2222 1 14
Q ss_pred CcHHHHHHHHhcCCcEEEEecCC
Q 048078 124 GEDAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~~ 146 (378)
+-+.+++..++.++|.+. -||+
T Consensus 62 ~~e~I~~ia~~~g~~~i~-pGyg 83 (110)
T PF00289_consen 62 NIEAIIDIARKEGADAIH-PGYG 83 (110)
T ss_dssp SHHHHHHHHHHTTESEEE-STSS
T ss_pred cHHHHhhHhhhhcCcccc-cccc
Confidence 456677777777777654 5664
No 39
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=80.38 E-value=3 Score=39.84 Aligned_cols=77 Identities=12% Similarity=0.070 Sum_probs=49.9
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
+|||+++|.+.++....+.|.+.. ..+++++|+.... ....+++++++.+ ++. + +
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~----~~~elv~v~d~~~-----------~~a~~~a~~~~~~---~~~----~---~ 55 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGR----INAELYAFYDRNL-----------EKAENLASKTGAK---ACL----S---I 55 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCC----CCeEEEEEECCCH-----------HHHHHHHHhcCCe---eEC----C---H
Confidence 379999999999888888887531 1477877764322 2356677777776 332 1 2
Q ss_pred HHHHHhcCCcEEEEecCCCcCChh
Q 048078 129 LSNLRALQPELCITAAYGNILPSK 152 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~ 152 (378)
.+.+ .++|+++.+.......+-
T Consensus 56 ~ell--~~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 56 DELV--EDVDLVVECASVNAVEEV 77 (265)
T ss_pred HHHh--cCCCEEEEcCChHHHHHH
Confidence 2233 479999988765555433
No 40
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.22 E-value=6.1 Score=32.02 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=46.9
Q ss_pred EEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHHH
Q 048078 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSN 131 (378)
Q Consensus 52 Ivf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~ 131 (378)
|+++|.+.++..+++.|.+. ..+++.|-.++. ..+.+.+.|++ ++. .+..+++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~~-------------~~~~~~~~~~~---~i~-gd~~~~~~l~~ 57 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDPE-------------RVEELREEGVE---VIY-GDATDPEVLER 57 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSHH-------------HHHHHHHTTSE---EEE-S-TTSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCcH-------------HHHHHHhcccc---ccc-ccchhhhHHhh
Confidence 68999999999999999884 346655544332 35667788877 443 34456677777
Q ss_pred HHhcCCcEEEEec
Q 048078 132 LRALQPELCITAA 144 (378)
Q Consensus 132 l~~~~~Dliv~~~ 144 (378)
+.-.++|.+|++.
T Consensus 58 a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 58 AGIEKADAVVILT 70 (116)
T ss_dssp TTGGCESEEEEES
T ss_pred cCccccCEEEEcc
Confidence 6667788777654
No 41
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=79.63 E-value=11 Score=39.05 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=70.9
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.||++++.+.......+.|.+. .+.+++++.|.-... ..+.+..... +...+. .++.+..++
T Consensus 325 GkrvaI~~~~~~~~~l~~~l~~E-----lGmevv~~~~~~~~~---------~~~~~~~~~~--~~~~~~-i~d~~~~e~ 387 (457)
T TIGR01284 325 GKKVWVWSGGPKLWHWPRPLEDE-----LGMEVVAVSTKFGHE---------DDYEKIIARV--REGTVI-IDDPNELEL 387 (457)
T ss_pred CCEEEEECCCcHHHHHHHHHHHh-----CCCEEEEEEEEeCCH---------HHHHHHHHhc--CCCeEE-EeCCCHHHH
Confidence 45888887776666666677642 379999887643211 1234444433 211121 234456677
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC-CC--CCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL-LP--LYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl-LP--~yRG~~pi~wai~~ 184 (378)
.+.+++.+||+++.-++.+.+-.++ ...++++|... -| -|||.--+...|.|
T Consensus 388 ~~~i~~~~pDllig~~~~~~~a~k~----gip~~~~~~~~~~~~~Gy~G~~~l~~~i~n 442 (457)
T TIGR01284 388 EEIIEKYKPDIILTGIREGELAKKL----GVPYINIHSYHNGPYIGFEGFVNLARDMYN 442 (457)
T ss_pred HHHHHhcCCCEEEecCCcchhhhhc----CCCEEEccccccCCccchhhHHHHHHHHHH
Confidence 8888999999999888877766553 34477777653 33 68887555554444
No 42
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.11 E-value=5.8 Score=36.23 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=26.7
Q ss_pred ceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
|||+++| |+..+...++...+. +||+.++|-++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHh
Confidence 7999999 566666677777664 7999999977654
No 43
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=79.03 E-value=7.8 Score=39.22 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=66.9
Q ss_pred ceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
.||+++| |+.++..+|+.+.+.. ..++|+++.++.+. ..+.+.|++++-.+.++.. +..
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p----~~f~VvaLaa~~n~----------~~l~~q~~~f~p~~v~i~~------~~~ 61 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNP----DRFRVVALSAGKNV----------ELLAEQAREFRPKYVVVAD------EEA 61 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCc----cccEEEEEEcCCCH----------HHHHHHHHHhCCCEEEEcC------HHH
Confidence 5899999 7878889998886542 26999999876543 3578899999977543321 222
Q ss_pred HHHHHhc--CCcEEEEecCCCcCChhhhcCCCC-ceEEEccCCCCCCCCchHHHHHHHcCC
Q 048078 129 LSNLRAL--QPELCITAAYGNILPSKFLNIPPM-GTVNIHPSLLPLYRGAAPVQRALQGGA 186 (378)
Q Consensus 129 ~~~l~~~--~~Dliv~~~~~~ilp~~il~~~~~-g~iNiHpSlLP~yRG~~pi~wai~~g~ 186 (378)
.+.|++. +.+.-|..|-.-+ .++++.+.. -++| ..+.+-|..|...||.+|.
T Consensus 62 ~~~l~~~l~~~~~~v~~G~~~~--~~l~~~~~vD~Vv~----Ai~G~aGl~ptl~Ai~aGK 116 (385)
T PRK05447 62 AKELKEALAAAGIEVLAGEEGL--CELAALPEADVVVA----AIVGAAGLLPTLAAIRAGK 116 (385)
T ss_pred HHHHHHhhccCCceEEEChhHH--HHHhcCCCCCEEEE----eCcCcccHHHHHHHHHCCC
Confidence 2223221 1222244443222 234443321 1333 3466678899999999885
No 44
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=78.21 E-value=31 Score=35.40 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=69.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCC---Ccc-CChHHHHHHHHCCCCCceecCCCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRG---RKV-LPSPVAQYALDRGFPADLIFTPERAG 124 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg---~~~-~~~~v~~~A~~~gIp~~~v~~~~~~~ 124 (378)
..|++++|+++.+...++.|.+.. ..++++++++...+...|+. ... ....+.+.++++++....+ ......
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~~~---~~g~~vvGfidd~~~~~~~~i~g~pVlg~~~l~~~i~~~~id~ViI-Aip~~~ 200 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQSNP---QLGLRPLAVVDTDPAASGRLLTGLPVVGADDALRLYARTRYAYVIV-AMPGTQ 200 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhhCc---cCCcEEEEEEeCCccccccccCCCcccChhHHHHHHHhCCCCEEEE-ecCCcc
Confidence 457999999987777777765432 24689999997543332221 100 1145667788888874423 222222
Q ss_pred c---HHHHHHHHhcCC-cEEEEecCCCcCChhh--hcCCCCceEEEccCCCC
Q 048078 125 E---DAFLSNLRALQP-ELCITAAYGNILPSKF--LNIPPMGTVNIHPSLLP 170 (378)
Q Consensus 125 ~---~~~~~~l~~~~~-Dliv~~~~~~ilp~~i--l~~~~~g~iNiHpSlLP 170 (378)
. .++++.+++.+. ++.++.....+.+.+. ...-...+++++..++.
T Consensus 201 ~~~~~~ll~~l~~~~v~~V~~vP~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (456)
T TIGR03022 201 AEDMARLVRKLGALHFRNVLIVPSLFGLPNLWISPRFIGGVLGLRVRNNLLL 252 (456)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCcccccccccceeeeeCCeeEEEEeccccc
Confidence 2 344555666677 7788777766654433 22223446888876554
No 45
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=78.05 E-value=9.1 Score=40.97 Aligned_cols=99 Identities=14% Similarity=0.193 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC--CCCC
Q 048078 37 SSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR--GFPA 114 (378)
Q Consensus 37 ~~~~~~~~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~--gIp~ 114 (378)
+.+..+.|+..+.-||+++|++.++..++..|++.+ -.+|.+|+++.. ....++ -..+.+.|++. ++++
T Consensus 117 s~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG-----~~~I~~vd~D~v-~SNlnR---IgEl~e~A~~~n~~v~v 187 (637)
T TIGR03693 117 ADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSG-----FPRFHAIVTDAE-EHALDR---IHELAEIAEETDDALLV 187 (637)
T ss_pred ccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcC-----CCcEEEEecccc-chhhhH---HHHHHHHHHHhCCCCce
Confidence 444557778888999999999999999999999863 356778887654 221111 11346677774 4553
Q ss_pred ceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcC
Q 048078 115 DLIFTPERAGEDAFLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 115 ~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~il 149 (378)
+ ..+...++++.+.+ .+.|++++++=....
T Consensus 188 ~---~i~~~~~~dl~ev~--~~~DiVi~vsDdy~~ 217 (637)
T TIGR03693 188 Q---EIDFAEDQHLHEAF--EPADWVLYVSDNGDI 217 (637)
T ss_pred E---eccCCcchhHHHhh--cCCcEEEEECCCCCh
Confidence 3 22233456666776 457999988854443
No 46
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=77.90 E-value=16 Score=37.95 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=67.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.|++++|.+.-+..+...|.+ .+.+++++-+.-... .......+..+-... + .++.+..++
T Consensus 335 GKrv~i~~g~~~~~~~~~~l~E------LGmevv~~g~~~~~~---------~~~~~~~~~~~~~~~-i--~~~~d~~el 396 (466)
T TIGR01282 335 GKTVMLYVGGLRPRHVIGAFED------LGMEVIGTGYEFAHN---------DDYERTTKYMKDGTL-I--YDDVTHYEF 396 (466)
T ss_pred CCEEEEECCCCcHHHHHHHHHH------CCCEEEEEeeecCCH---------HHHHHHHHhcCCCeE-E--eeCCCHHHH
Confidence 4678888765445566665544 478987554421110 112222222221111 2 233445678
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCC--C--CCCCchHHHHHHHcC
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLL--P--LYRGAAPVQRALQGG 185 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlL--P--~yRG~~pi~wai~~g 185 (378)
.+.+++.+||++|.-+.++.+-.++ ...++.+|.--+ | .|+|.--+-..|.|.
T Consensus 397 ~~~i~~~~pDl~ig~~~~~~~a~k~----gIP~~~~~~~~~~~~~~Gy~G~~~l~~~i~~~ 453 (466)
T TIGR01282 397 EEFVEKLKPDLVGSGIKEKYVFQKM----GVPFRQMHSWDYSGPYHGYDGFAIFARDMDMA 453 (466)
T ss_pred HHHHHHhCCCEEEecCCccceeeec----CCCccccccccccCcchhHhHHHHHHHHHHHH
Confidence 8889999999999988887776553 334567765544 5 788876666656553
No 47
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=77.78 E-value=13 Score=34.70 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=49.5
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCC--CccCChHHHHHHHHCCCCCceecCCCC--CCc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRG--RKVLPSPVAQYALDRGFPADLIFTPER--AGE 125 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg--~~~~~~~v~~~A~~~gIp~~~v~~~~~--~~~ 125 (378)
||++++=|+ +..+.-+|+.... . ++|++++|.-+....+- ......-+...|+..|||.+.+..+.. ..-
T Consensus 1 Mkv~vl~SG--GKDS~lAl~~~~~---~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~ 74 (222)
T TIGR00289 1 MKVAVLYSG--GKDSILALYKALE---E-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEV 74 (222)
T ss_pred CeEEEEecC--cHHHHHHHHHHHH---c-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHH
Confidence 577776666 4555555554321 2 78888877544322222 122345677899999999654332221 112
Q ss_pred HHHHHHHHhcCCcEEEE
Q 048078 126 DAFLSNLRALQPELCIT 142 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~ 142 (378)
+++.+.+++.+++-++.
T Consensus 75 ~~l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 75 EDLAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34556667777777765
No 48
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=77.57 E-value=9.6 Score=36.55 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
..++||+++|.+.++....+.|.+.. .++++++|+...+ ....++++++|++. .+ .+ -+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~-----------~~a~~~a~~~g~~~--~~--~~--~e 62 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDP-----------QRHADFIWGLRRPP--PV--VP--LD 62 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCH-----------HHHHHHHHhcCCCc--cc--CC--HH
Confidence 34699999999998888888886531 2578877765432 23567888888641 11 11 12
Q ss_pred HHHHHHHhcCCcEEEEecCCC
Q 048078 127 AFLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ 147 (378)
++ + .++|+++.+.-..
T Consensus 63 el---l--~~~D~Vvi~tp~~ 78 (271)
T PRK13302 63 QL---A--THADIVVEAAPAS 78 (271)
T ss_pred HH---h--cCCCEEEECCCcH
Confidence 22 3 2589998876433
No 49
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=77.54 E-value=9.6 Score=34.79 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=86.8
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
+.++|++.|.+.++....+.|.+. +++|+ +++.+. ..+.+++..+|.. ...+ ++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~------G~~Vv--v~D~~~----------~~~~~~~~~~g~~---~v~~-----~~ 80 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE------GAKLI--VADINE----------EAVARAAELFGAT---VVAP-----EE 80 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCEEE--EEcCCH----------HHHHHHHHHcCCE---EEcc-----hh
Confidence 357899999999999998988875 67776 333321 2356666666654 3222 22
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCC-CCCCCee
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRA-LDAGPVI 206 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~-~D~G~Ii 206 (378)
+-..++|+++.++...+|..+.++..+-+.| +=.+--|--. |-...++.. -| ++++++- .-+|.++
T Consensus 81 ----l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v-~~~AN~~~~~---~~~~~~L~~---~G--i~~~Pd~~~NaGGv~ 147 (200)
T cd01075 81 ----IYSVDADVFAPCALGGVINDDTIPQLKAKAI-AGAANNQLAD---PRHGQMLHE---RG--ILYAPDYVVNAGGLI 147 (200)
T ss_pred ----hccccCCEEEecccccccCHHHHHHcCCCEE-EECCcCccCC---HhHHHHHHH---CC--CEEeCceeeeCcCce
Confidence 2234799999888889999999887765433 2222222211 344445442 24 3445433 3366666
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 048078 207 AREKMEVDDQIKAPELLVLLFSEGSELLIRELPSI 241 (378)
Q Consensus 207 ~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l 241 (378)
.. -+....++ .++..+++... .+.+.++++.-
T Consensus 148 ~~-~~e~~~~~-~~~~~~~~~~~-~~~~~~v~~~a 179 (200)
T cd01075 148 NV-ADELYGGN-EARVLAKVEAI-YDTLLEIFAQA 179 (200)
T ss_pred ee-hhHHhCCc-HHHHHHHHHHH-HHHHHHHHHHH
Confidence 52 22222222 44566666555 55555555443
No 50
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=76.42 E-value=15 Score=37.31 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=69.0
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCC-CCCceecCCCCCCcH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG-FPADLIFTPERAGED 126 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~g-Ip~~~v~~~~~~~~~ 126 (378)
.-.||+++|.+.......+.|.+. .+++++++.+..... ....+..++.. .+ +. .++.++-
T Consensus 287 ~Gk~vai~~~~~~~~~la~~l~~e-----lG~~v~~i~~~~~~~---------~~~~~~~~~~~~~~---~~-v~d~~~~ 348 (415)
T cd01977 287 KGKKVCIWTGGPKLWHWTKVIEDE-----LGMQVVAMSSKFGHQ---------EDFEKVIARGGEGT---IY-IDDPNEL 348 (415)
T ss_pred CCCEEEEECCCchHHHHHHHHHHh-----cCCEEEEEEEEeccH---------HHHHHHHHhcCCce---EE-EeCCCHH
Confidence 357888887666666666766632 378998876642111 11233333332 22 22 1344556
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC---CCCCCCchHHHHHHHc
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL---LPLYRGAAPVQRALQG 184 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl---LP~yRG~~pi~wai~~ 184 (378)
++.+.+++.+||++|.-++.+-+-.+ +.. .++.+|+.. .=-|||..-+...|.|
T Consensus 349 e~~~~~~~~~pdliig~s~~~~~a~~-lgi---p~~~~~~~~~~~~~Gy~G~~~l~~~i~n 405 (415)
T cd01977 349 EFFEILEMLKPDIILTGPRVGELVKK-LHV---PYVNIHAYHNGPYMGFEGFVNLARDMYN 405 (415)
T ss_pred HHHHHHHhcCCCEEEecCccchhhhh-cCC---CEEeccCCcCCCccchhhHHHHHHHHHH
Confidence 77788889999999988888766555 333 366665543 3368887665555544
No 51
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.22 E-value=7.7 Score=37.04 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=48.3
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC-CCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR-GFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~-gIp~~~v~~~~~~~~~~~ 128 (378)
|||+++|....+....+.|.+. ++++++.++..... +...+. +++ +. ....+.+++
T Consensus 1 m~ILvlGGT~egr~la~~L~~~------g~~v~~s~~t~~~~-------------~~~~~~g~~~---v~-~g~l~~~~l 57 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQ------GIEILVTVTTSEGK-------------HLYPIHQALT---VH-TGALDPQEL 57 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhC------CCeEEEEEccCCcc-------------ccccccCCce---EE-ECCCCHHHH
Confidence 6899988744577777888764 58887766654321 122233 455 33 234555667
Q ss_pred HHHHHhcCCcEEEEecC
Q 048078 129 LSNLRALQPELCITAAY 145 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~ 145 (378)
.+.+++.++|++|-+..
T Consensus 58 ~~~l~~~~i~~VIDAtH 74 (256)
T TIGR00715 58 REFLKRHSIDILVDATH 74 (256)
T ss_pred HHHHHhcCCCEEEEcCC
Confidence 78999999999988774
No 52
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=75.29 E-value=22 Score=36.29 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=64.4
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
...|++++|.+.-+......+.+ .+.+++.+-+.-... ....+..+..+-. ..+. ++.+..+
T Consensus 299 ~Gkrv~i~~g~~~~~~~~~~l~e------lGmevv~~g~~~~~~---------~~~~~~~~~~~~~-~~i~--~~~d~~e 360 (421)
T cd01976 299 EGKTVMLYVGGLRPRHYIGAYED------LGMEVVGTGYEFAHR---------DDYERTEVIPKEG-TLLY--DDVTHYE 360 (421)
T ss_pred CCCEEEEECCCCcHHHHHHHHHH------CCCEEEEEEeecCCH---------HHHhhHHhhcCCc-eEEE--cCCCHHH
Confidence 35788888755445555554443 478988765521110 0111111111111 1122 2334567
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCC--C--CCCCchHHHHHH
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLL--P--LYRGAAPVQRAL 182 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlL--P--~yRG~~pi~wai 182 (378)
+.+.+++.+||+++.-+..+.+..++ ...++.+|..-+ | -|||.--+-..|
T Consensus 361 ~~~~i~~~~pDliig~~~~~~~a~k~----giP~~~~~~~~~~~~~~Gy~G~~~~~~~i 415 (421)
T cd01976 361 LEEFVKRLKPDLIGSGIKEKYVFQKM----GIPFRQMHSWDYSGPYHGFDGFAIFARDM 415 (421)
T ss_pred HHHHHHHhCCCEEEecCcchhhhhhc----CCCeEeCCccccCCCccchhhHHHHHHHH
Confidence 78889999999999888877765542 344677776654 6 788875554444
No 53
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=74.74 E-value=19 Score=36.54 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=65.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|++++|.+.......+.|.+ .+++++.+.+....+ .....+....+.... +. .+.+..++
T Consensus 287 gkrv~i~~~~~~~~~la~~l~e------lGm~v~~~~~~~~~~---------~~~~~~~~~~~~~~~-v~--~~~~~~e~ 348 (410)
T cd01968 287 GKKAALYTGGVKSWSLVSALQD------LGMEVVATGTQKGTK---------EDYERIKELLGEGTV-IV--DDANPREL 348 (410)
T ss_pred CCEEEEEcCCchHHHHHHHHHH------CCCEEEEEecccCCH---------HHHHHHHHHhCCCcE-EE--eCCCHHHH
Confidence 5688888887777777776654 378988887643321 122333333322211 22 23445677
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC---CCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS---LLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS---lLP~yRG~~pi~wai~~ 184 (378)
.+.++..+||+++.-++.+-+-.+ +. ..+++++.. ..--|+|.--+...+.|
T Consensus 349 ~~~i~~~~pDl~ig~s~~~~~a~~-~g---ip~~~~~~~~~~~~~Gy~G~~~l~~~i~n 403 (410)
T cd01968 349 KKLLKEKKADLLVAGGKERYLALK-LG---IPFCDINHERKHPYAGYEGMLNFAKEVDL 403 (410)
T ss_pred HHHHhhcCCCEEEECCcchhhHHh-cC---CCEEEccccccCCccchhhHHHHHHHHHH
Confidence 888999999999988776555332 22 223443322 23357886555544443
No 54
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=74.53 E-value=15 Score=34.46 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=49.5
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCC--ccCChHHHHHHHHCCCCCceecCCCC--CCc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGR--KVLPSPVAQYALDRGFPADLIFTPER--AGE 125 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~--~~~~~~v~~~A~~~gIp~~~v~~~~~--~~~ 125 (378)
||++++=|+ +..+.-+|+.+.+ . ++|++++|--+....|-. .+...-+...|+..|||...+..... ...
T Consensus 1 Mk~~~l~SG--GKDS~~al~~a~~---~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~ 74 (223)
T TIGR00290 1 MKVAALISG--GKDSCLALYHALK---E-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEV 74 (223)
T ss_pred CcEEEEecC--cHHHHHHHHHHHH---h-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHH
Confidence 566666665 4666666665432 3 778887764333222221 22335667889999999532222111 123
Q ss_pred HHHHHHHHhcCCcEEEE
Q 048078 126 DAFLSNLRALQPELCIT 142 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~ 142 (378)
+++.+.|++.++|.+|.
T Consensus 75 e~l~~~l~~~gv~~vv~ 91 (223)
T TIGR00290 75 EELKGILHTLDVEAVVF 91 (223)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 45567777778887765
No 55
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=74.45 E-value=19 Score=38.00 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCcCChhhhcCCCCceEEEccCCCCCCCCc
Q 048078 146 GNILPSKFLNIPPMGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 146 ~~ilp~~il~~~~~g~iNiHpSlLP~yRG~ 175 (378)
.+.+.+++++..+-+++-+|| ||.+||.
T Consensus 272 ~y~vt~elm~~ak~~ai~MHc--LPa~Rg~ 299 (525)
T PRK13376 272 AVTFRKEFLDKLPEGVKFYHP--LPRHKVY 299 (525)
T ss_pred CcEECHHHHhccCCCCEEECC--CCCCCCC
Confidence 456788898888878999998 6899884
No 56
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=74.44 E-value=14 Score=36.99 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=62.9
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC-CCCCCCC--CccCChHHHHHHHHCCCCCceecCCCC--
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP-PSRRDRG--RKVLPSPVAQYALDRGFPADLIFTPER-- 122 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~-~~~~grg--~~~~~~~v~~~A~~~gIp~~~v~~~~~-- 122 (378)
.++||++.-|+..-.++--.|+..+ ++||++|.-.. +...+.+ .......+...|.+.|||++.+ ...+
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-----GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~v-df~~~y 75 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQ-----GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVV-DFEKEF 75 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHHHc-----CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEE-chHHHH
Confidence 4789999889876666666777753 89999997532 2111111 1112346899999999997643 1110
Q ss_pred ---------------------------CCcHHHHHHHHhcCCcEEEEecCCCcCCh
Q 048078 123 ---------------------------AGEDAFLSNLRALQPELCITAAYGNILPS 151 (378)
Q Consensus 123 ---------------------------~~~~~~~~~l~~~~~Dliv~~~~~~ilp~ 151 (378)
+.=..+++.+.++++|++.+-.|-++-+.
T Consensus 76 ~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~ 131 (356)
T COG0482 76 WNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRED 131 (356)
T ss_pred HHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecC
Confidence 01124556667788999998888766653
No 57
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=74.28 E-value=25 Score=34.85 Aligned_cols=102 Identities=10% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCceEEEEecC--cchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHH----HHHHHHCCCCCceecCCC
Q 048078 48 RKKPLVFLGSP--QVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPV----AQYALDRGFPADLIFTPE 121 (378)
Q Consensus 48 ~~~rIvf~Gs~--~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v----~~~A~~~gIp~~~v~~~~ 121 (378)
..+||+|+|.. ..+.+.+..+ .. .++++..+ + |+... + +..+ +++|++.|..+. +. .
T Consensus 154 ~g~kia~vGD~~~~v~~Sl~~~~-~~-----~g~~v~~~-~-P~~~~-----~-~~~~~~~~~~~~~~~g~~~~-~~--~ 216 (332)
T PRK04284 154 KDIKFTYVGDGRNNVANALMQGA-AI-----MGMDFHLV-C-PKELN-----P-DDELLNKCKEIAAETGGKIT-IT--D 216 (332)
T ss_pred CCcEEEEecCCCcchHHHHHHHH-HH-----cCCEEEEE-C-Ccccc-----C-CHHHHHHHHHHHHHcCCeEE-EE--c
Confidence 46899999975 2222333332 22 25665433 3 32210 0 1122 355667887632 21 1
Q ss_pred CCCcHHHHHHHHhcCCcEEEEecC------------------CCcCChhhhcCCC-CceEEEccCCCCCCCCc
Q 048078 122 RAGEDAFLSNLRALQPELCITAAY------------------GNILPSKFLNIPP-MGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 122 ~~~~~~~~~~l~~~~~Dliv~~~~------------------~~ilp~~il~~~~-~g~iNiHpSlLP~yRG~ 175 (378)
+ +.+.+ .++|++.+-.| .+.|.+++++..+ -.++-+|| ||.+||.
T Consensus 217 d-----~~ea~--~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp--lP~~r~~ 280 (332)
T PRK04284 217 D-----IDEGV--KGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC--LPSFHDL 280 (332)
T ss_pred C-----HHHHh--CCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC--CCCCCCc
Confidence 1 12233 35777776533 4557778888764 36899998 6888875
No 58
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=74.28 E-value=31 Score=34.37 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.7
Q ss_pred CcCChhhhcCCCCceEEEccCCCCCCCC
Q 048078 147 NILPSKFLNIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 147 ~ilp~~il~~~~~g~iNiHpSlLP~yRG 174 (378)
+.|.+++++..+.+++-+|| ||.+||
T Consensus 252 y~v~~ell~~a~~~~ivmHp--LP~~Rg 277 (338)
T PRK02255 252 YQVTPELMAKAGPHAKFMHC--LPATRG 277 (338)
T ss_pred ceECHHHHhccCCCCEEeCC--CCCcCC
Confidence 56777888877778999998 466665
No 59
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=74.19 E-value=7.6 Score=33.89 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=43.2
Q ss_pred EEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHH
Q 048078 52 LVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 52 Ivf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~ 130 (378)
|+++| |+..+..+++.|++. +++|.+++-++.+ ..+ ..++. +...+-.+.+.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~------------~~~---~~~~~---~~~~d~~d~~~~~~ 56 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSK------------AED---SPGVE---IIQGDLFDPDSVKA 56 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGG------------HHH---CTTEE---EEESCTTCHHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchh------------ccc---ccccc---cceeeehhhhhhhh
Confidence 68899 677888888999985 5898887744321 222 55565 44433333344555
Q ss_pred HHHhcCCcEEEEec
Q 048078 131 NLRALQPELCITAA 144 (378)
Q Consensus 131 ~l~~~~~Dliv~~~ 144 (378)
.++ ++|.+|.+.
T Consensus 57 al~--~~d~vi~~~ 68 (183)
T PF13460_consen 57 ALK--GADAVIHAA 68 (183)
T ss_dssp HHT--TSSEEEECC
T ss_pred hhh--hcchhhhhh
Confidence 564 788888765
No 60
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=74.08 E-value=20 Score=36.99 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=66.7
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..||++++.+.......+.++.. .+.+++++.+.-... ..+....+. ++...+. .++.++.++
T Consensus 317 gkrvai~~~~~~~~~~~~~ll~e-----lGm~v~~~~~~~~~~---------~~~~~~l~~--l~~~~~~-v~~~~~~e~ 379 (443)
T TIGR01862 317 GKRVCLYIGGSRLWHWIGSAEED-----LGMEVVAVGYEFAHE---------DDYEKTMKR--MGEGTLL-IDDPNELEF 379 (443)
T ss_pred CCeEEEECCchhHHHHHHHHHHH-----CCCEEEEeccccccH---------HHHHHHHHh--CCCceEE-ecCCCHHHH
Confidence 56898887665555665635543 378988886643211 112222222 2211122 334556677
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC---CCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS---LLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS---lLP~yRG~~pi~wai~~ 184 (378)
.+.+++.+||++|.-++.+.+-.+ +..| ++.+|+. ..=-|||.--+-..|.|
T Consensus 380 ~~~i~~~~pdllig~s~~~~~A~~-lgip---~~~~~~~~~~~~~Gy~G~~~l~~~i~n 434 (443)
T TIGR01862 380 EEILEKLKPDIIFSGIKEKFVAQK-LGVP---YRQMHSYDNGPYHGFEGFVNFARDMYN 434 (443)
T ss_pred HHHHHhcCCCEEEEcCcchhhhhh-cCCC---eEecCCccccCccchhHHHHHHHHHHH
Confidence 788899999999998888777665 3433 4444432 23378887555544443
No 61
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=73.76 E-value=19 Score=36.55 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=69.0
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC--CCCCceecCCCCCCc
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR--GFPADLIFTPERAGE 125 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~--gIp~~~v~~~~~~~~ 125 (378)
...|++++|.+......-+.|.+. +.+++.+.|...... ...+..+.. +.. |.. +.+-
T Consensus 273 ~Gkrv~i~gd~~~~~~l~~~L~el------Gm~~v~~~t~~~~~~---------~~~~~~~~l~~~~~---v~~--~~d~ 332 (407)
T TIGR01279 273 RGKKIFFFGDNLLELPLARFLKRC------GMEVVECGTPYIHRR---------FHAAELALLEGGVR---IVE--QPDF 332 (407)
T ss_pred CCCEEEEECCchHHHHHHHHHHHC------CCEEEEecCCCCChH---------HHHHHHhhcCCCCe---EEe--CCCH
Confidence 357899999888777777888773 789998887554210 011111111 222 322 2344
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhc--CCCCceEEEccCCCCCCCCchHHHHHHH
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLN--IPPMGTVNIHPSLLPLYRGAAPVQRALQ 183 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~--~~~~g~iNiHpSlLP~yRG~~pi~wai~ 183 (378)
.++.+.+++.+||++|.-+. +.-.+.+ .|-+-.++.|..++=-|+|+.-+.-.|.
T Consensus 333 ~~l~~~i~~~~pDllig~~~---~~~pl~r~GfP~~dr~~~~~~p~~Gy~Ga~~l~~~i~ 389 (407)
T TIGR01279 333 HRQLQRIRATRPDLVVTGLG---TANPLEAQGFTTKWSIEFTFAQIHGFDNAADLAELFT 389 (407)
T ss_pred HHHHHHHHhcCCCEEecCcc---CCCcHhhCCcceeEeeceEEEcccCHHHHHHHHHHHH
Confidence 56778889999999997652 2222222 2333456777778888999865554443
No 62
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=73.55 E-value=10 Score=31.82 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=29.9
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
|||++.|. +..+..+.+.+.+. .++++++++..++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCC
Confidence 79999999 99888888888875 3799999987665
No 63
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=73.50 E-value=10 Score=34.67 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=46.5
Q ss_pred EEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHH
Q 048078 52 LVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 52 Ivf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~ 130 (378)
|+++| ++.++..++++|++. +++|.+++-+++ +...+..+..|+. +...+-.+.+.+.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~-----------~~~~~~l~~~g~~---vv~~d~~~~~~l~~ 60 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPS-----------SDRAQQLQALGAE---VVEADYDDPESLVA 60 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSH-----------HHHHHHHHHTTTE---EEES-TT-HHHHHH
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccc-----------hhhhhhhhcccce---EeecccCCHHHHHH
Confidence 67788 788999999999983 688776664332 1334455667886 44433334455556
Q ss_pred HHHhcCCcEEEEecC
Q 048078 131 NLRALQPELCITAAY 145 (378)
Q Consensus 131 ~l~~~~~Dliv~~~~ 145 (378)
.++ +.|.++++.-
T Consensus 61 al~--g~d~v~~~~~ 73 (233)
T PF05368_consen 61 ALK--GVDAVFSVTP 73 (233)
T ss_dssp HHT--TCSEEEEESS
T ss_pred HHc--CCceEEeecC
Confidence 664 7888877654
No 64
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=73.06 E-value=37 Score=33.23 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=56.9
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHH-HHHHCCCCCceecCCCCCCc
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQ-YALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~-~A~~~gIp~~~v~~~~~~~~ 125 (378)
-..+||+++|...-....+-.++.. .++++. ++.|+.. .+ +..+.+ ++++.|..+. ..++
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~-----~g~~v~--~~~P~~~-----~~-~~~~~~~~~~~~g~~~~---~~~d--- 210 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAAL-----LGFDLR--VATPKGY-----EP-DPEIVEKIAKETGASIE---VTHD--- 210 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHH-----cCCEEE--EECCccc-----CC-CHHHHHHHHHHcCCeEE---EEcC---
Confidence 3468999999743233333333332 256543 3334321 11 122333 4788887732 1111
Q ss_pred HHHHHHHHhcCCcEEEEecC-----------------CCcCChhhhcCCCCceEEEccCCCCCCCCc
Q 048078 126 DAFLSNLRALQPELCITAAY-----------------GNILPSKFLNIPPMGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~il~~~~~g~iNiHpSlLP~yRG~ 175 (378)
+.+.+ .++|++.+-.| .+.|.+++++..+.+++-+|| ||.+||.
T Consensus 211 --~~~a~--~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp--lP~~R~~ 271 (304)
T PRK00779 211 --PKEAV--KGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC--LPAHRGE 271 (304)
T ss_pred --HHHHh--CCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC--CCccCCC
Confidence 22333 36788877543 345666788777777999996 5677753
No 65
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=73.05 E-value=13 Score=38.11 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
...|+++.|.+.......+.|.+. +.+++.|++...... ....+.++..+.+.... |.. ..+..+
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~el------G~~~~~v~~~~~~~~------~~~~l~~~~~~~~~~~~-v~~--~~d~~e 363 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLEN------GMVPVLIATGSESKK------LKEKLEEDLKEYVEKCV-ILD--GADFFD 363 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHC------CCEEEEEEeCCCChH------HHHHHHHHHHhcCCceE-EEe--CCCHHH
Confidence 356899999877777777777653 788888887543210 01122233444444422 221 233467
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEc----------cCCCCCCCCchHHHHHHHc
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIH----------PSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiH----------pSlLP~yRG~~pi~wai~~ 184 (378)
+.+.+++.+||+++.-++.+.+..++ . ..++++. -...=-|||..-+...|.|
T Consensus 364 ~~~~l~~~~~dliiG~s~~~~~a~~~-~---ip~~~~~~P~~d~~~~~~~~~~Gy~G~~~l~~~i~n 426 (429)
T cd03466 364 IESYAKELKIDVLIGNSYGRRIAEKL-G---IPLIRIGFPIHDRLGGQRIRSLGYEGSIELVDRITN 426 (429)
T ss_pred HHHHHHhcCCCEEEECchhHHHHHHc-C---CCEEEecCCceeeeccCccCceechhHHHHHHHHHH
Confidence 78889999999999988887666553 2 2234332 1123368887766665554
No 66
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.09 E-value=9.4 Score=39.17 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=71.8
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC--CCCCceecCCCCCCc
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR--GFPADLIFTPERAGE 125 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~--gIp~~~v~~~~~~~~ 125 (378)
...|++++|.+.......+.|.+. +.+++.+++....+. ....+.++..+. +.... |.. ..+-
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~el------Gm~v~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~-v~~--~~d~ 366 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLEL------GMEPVHVLTGNGGKR------FEKEMQALLDASPYGAGAK-VYP--GKDL 366 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC------CCEEEEEEeCCCCHH------HHHHHHHHHhhcCCCCCcE-EEE--CCCH
Confidence 357999999887777777777753 799988887543321 112355555552 22322 322 1234
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCC----ceEE---EccCCCCCCCCchHHHHHHHc
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPPM----GTVN---IHPSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~----g~iN---iHpSlLP~yRG~~pi~wai~~ 184 (378)
.++.+.++..+||++|-.++.+.+.++ +..|-. .++. .+...+=-|||..-+-..|.|
T Consensus 367 ~e~~~~i~~~~pDliiG~s~~~~~a~~-~gip~v~~~~P~~d~~~~~~~~~~Gy~G~~~l~~~i~n 431 (435)
T cd01974 367 WHLRSLLFTEPVDLLIGNTYGKYIARD-TDIPLVRFGFPIFDRHHHHRFPIVGYEGALRLLTTILN 431 (435)
T ss_pred HHHHHHHhhcCCCEEEECccHHHHHHH-hCCCEEEeeCCcccccCCcccceeecHHHHHHHHHHHH
Confidence 567788899999999988887766554 222210 1121 222245578887666655544
No 67
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=71.33 E-value=50 Score=34.20 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=67.8
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCC--ccCChHHHHHHHHCCCCCceecCCCCCCc-
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGR--KVLPSPVAQYALDRGFPADLIFTPERAGE- 125 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~--~~~~~~v~~~A~~~gIp~~~v~~~~~~~~- 125 (378)
..|++++|+++-+....+.|.+. +..++++++++.+.+. .|.+- --....+.++++++++.... ...+....
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~---~~~g~~vVGfiDdd~~-~g~~VpvlG~~~dL~~~v~~~~IdeVi-IAip~~~~~ 217 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNE---PWLGFEVVGVYHDPKP-GGVSNDWAGNLQQLVEDAKAGKIHNVY-IAMSMCDGA 217 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcC---ccCCeEEEEEEeCCcc-ccCCCCcCCCHHHHHHHHHhCCCCEEE-EeCCCcchH
Confidence 46799999998666666776543 2346899999865431 12111 00124567788889988553 33222222
Q ss_pred --HHHHHHHHhcCCcEEEEecCCCcC--ChhhhcCCCCceEEEccCCCCC
Q 048078 126 --DAFLSNLRALQPELCITAAYGNIL--PSKFLNIPPMGTVNIHPSLLPL 171 (378)
Q Consensus 126 --~~~~~~l~~~~~Dliv~~~~~~il--p~~il~~~~~g~iNiHpSlLP~ 171 (378)
.++++.+++...++.++..+..+. +..+-..-....++++..++..
T Consensus 218 ~l~ell~~~~~~~v~V~ivP~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 267 (463)
T PRK10124 218 RVKKLVRQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSG 267 (463)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhccccccchhhcCCeeEEEEeccccch
Confidence 345556667788888877764332 1122222223467777776544
No 68
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.28 E-value=7.7 Score=37.59 Aligned_cols=49 Identities=31% Similarity=0.367 Sum_probs=38.8
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFP 113 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp 113 (378)
+.+|+++|+. |+.-.|.++.... .+++++++..+...+ -+++|.++|+|
T Consensus 4 pksVvV~Gtr-FGq~Ylaaf~~~~----~~~eLaGiLaqGSeR-----------SRaLAh~~GVp 52 (361)
T COG4693 4 PKSVVVCGTR-FGQFYLAAFAAAP----PRFELAGILAQGSER-----------SRALAHRLGVP 52 (361)
T ss_pred CceEEEecch-HHHHHHHHhccCC----CCceeehhhhcccHH-----------HHHHHHHhCCc
Confidence 4499999995 8888888876652 379999999876543 36999999999
No 69
>PRK11579 putative oxidoreductase; Provisional
Probab=71.22 E-value=15 Score=36.22 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=24.8
Q ss_pred CceEEEEecCcchHH-HHHHHHHccCCCCCCceEEEEEcC
Q 048078 49 KKPLVFLGSPQVSVN-VLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~-~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
++||+++|.+.++.. .+..+... .++++++|+..
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~ 38 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSS 38 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECC
Confidence 689999999988764 45555443 36899998753
No 70
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=70.86 E-value=23 Score=36.67 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=67.7
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.||++++.+.......+.|.+. .+.+++++.+.-... ....++.. .+.... +. .++.++-++
T Consensus 327 GkrvaI~~~~~~~~~~~~~l~~E-----lGmevv~~~~~~~~~---------~~~~~~~~-~~~~~~-i~-i~d~~~~e~ 389 (461)
T TIGR01860 327 GKKMCIWTGGPRLWHWTKALEDD-----LGMQVVAMSSKFGHQ---------EDFEKVIA-RGKEGT-IY-IDDGNELEF 389 (461)
T ss_pred CCEEEEECCCchHHHHHHHHHHh-----CCCEEEEEeeecCCH---------HHHHHHHH-hcCCCe-EE-EeCCCHHHH
Confidence 56888887666566777777743 378888876542211 12333322 222211 21 123455667
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC---CCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS---LLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS---lLP~yRG~~pi~wai~~ 184 (378)
.+.+++.+||++|.-++.+.+-.+ + ...++..|+. ..--|+|.--+...|.|
T Consensus 390 ~~~~~~~~pDliig~s~~~~~A~k-l---giP~vd~~~~~~~~~~GY~G~~~l~~~i~n 444 (461)
T TIGR01860 390 FEVLDLIKPDVIFTGPRVGELVKK-L---HIPYVNGHGYHNGPYMGFEGAVNMARDMYN 444 (461)
T ss_pred HHHHHhcCCCEEEeCCcchhhHhh-c---CCCEEecccccccCcccHHHHHHHHHHHHH
Confidence 778889999999988877666444 2 3335655555 45578886555544444
No 71
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=70.68 E-value=8 Score=37.39 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhh-hcCCCCceEEEccCC-----------CCCCCCchHHHHHHHcCCcEEEEEE
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKF-LNIPPMGTVNIHPSL-----------LPLYRGAAPVQRALQGGAKETGVSL 193 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~i-l~~~~~g~iNiHpSl-----------LP~yRG~~pi~wai~~g~~~tGvTi 193 (378)
+++-+.+++.+||++|+++-.+.. .+ ++..+.=+|+..+++ .+.++|...+-+.|...-...|+.+
T Consensus 38 ~~i~~~v~~~~PDviVvi~sdH~~--~f~~d~~p~f~Ig~~~~~~~~~~g~~~~~~~~~~g~~eLA~~i~~~~~~~g~~~ 115 (279)
T PRK13365 38 EPVAAWLAEQKADVLVFFYNDHCT--TFFFDLYPTFALGVGERFPVADEGAGLRPLPPIRGDVQLQAHIAECLVNDEFDL 115 (279)
T ss_pred HHHHHHHHHhCCCEEEEEcCchHH--HhccccCCceEEEecccccccccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 345677889999999999766652 33 455444466777666 4567788888888876665555555
Q ss_pred EEe-cCCCCCCCe
Q 048078 194 AFT-VRALDAGPV 205 (378)
Q Consensus 194 h~~-~~~~D~G~I 205 (378)
... +-++|.|-.
T Consensus 116 ~~~~~~~lDHG~~ 128 (279)
T PRK13365 116 TVFQDKPIDHGCA 128 (279)
T ss_pred eeccCCCCCchhh
Confidence 433 345787653
No 72
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=70.66 E-value=34 Score=35.35 Aligned_cols=111 Identities=20% Similarity=0.160 Sum_probs=62.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC--CCCCceecCCCCCCcH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR--GFPADLIFTPERAGED 126 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~--gIp~~~v~~~~~~~~~ 126 (378)
..|+++++.+.......+.|.+. +++|+.+.|....+ .....+.... ++. +. ++.+..
T Consensus 326 Gkrv~i~~g~~~~~~l~~~l~el------Gmevv~~~t~~~~~---------~d~~~l~~~~~~~~~---v~--~~~d~~ 385 (456)
T TIGR01283 326 GKKAAIYTGGVKSWSLVSALQDL------GMEVVATGTQKGTE---------EDYARIRELMGEGTV---ML--DDANPR 385 (456)
T ss_pred CCEEEEEcCCchHHHHHHHHHHC------CCEEEEEeeecCCH---------HHHHHHHHHcCCCeE---EE--eCCCHH
Confidence 46788777666677777777653 78998887643221 1112222221 221 22 233456
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC---CCCCCCCchHHHHHHH
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS---LLPLYRGAAPVQRALQ 183 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS---lLP~yRG~~pi~wai~ 183 (378)
++.+.+++.+||+++.-++.+.+..+ + ...++++|.- ..=-|+|..-+-..|.
T Consensus 386 e~~~~i~~~~pDl~ig~~~~~~~a~k-~---giP~i~~~~~~~~p~~Gy~G~~~l~~~i~ 441 (456)
T TIGR01283 386 ELLKLLLEYKADLLIAGGKERYTALK-L---GIPFCDINHEREHPYAGYDGMVEFAREVD 441 (456)
T ss_pred HHHHHHhhcCCCEEEEccchHHHHHh-c---CCCEEEcccccCCCCcchhhHHHHHHHHH
Confidence 78888999999999976655554332 1 2224544432 2335778654444333
No 73
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=70.65 E-value=14 Score=35.50 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=35.9
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFP 113 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp 113 (378)
++||+|+|.+..+...+..|+++...+ ..+ -+||+|... ...+++.++|+.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~--~~~--I~v~~~~~e----------~~~~l~~~~g~~ 51 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALP--PEE--IIVTNRSEE----------KRAALAAEYGVV 51 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCC--cce--EEEeCCCHH----------HHHHHHHHcCCc
Confidence 479999999999999999999874211 122 245665432 234688899888
No 74
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=70.62 E-value=7 Score=36.45 Aligned_cols=93 Identities=25% Similarity=0.198 Sum_probs=46.0
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCC--CCccCChHHHHHHHHCCCCCceecCC--CCCCc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDR--GRKVLPSPVAQYALDRGFPADLIFTP--ERAGE 125 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~gr--g~~~~~~~v~~~A~~~gIp~~~v~~~--~~~~~ 125 (378)
||++.+=|+ +..+.-+|+.+.. . ++|++++|--+....+ -..+...-+...|+..|||...+..+ .....
T Consensus 1 Mk~v~l~SG--GKDS~lAl~~a~~---~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~ 74 (218)
T PF01902_consen 1 MKVVALWSG--GKDSCLALYRALR---Q-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYV 74 (218)
T ss_dssp -EEEEE--S--SHHHHHHHHHHHH---T--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHH
T ss_pred CcEEEEEcC--cHHHHHHHHHHHH---h-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhh
Confidence 677777776 4666656655432 2 8888877643222111 11223446788899999996543333 12223
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCCh
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPS 151 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~ 151 (378)
+++.+.|++.+++.++. |-|...
T Consensus 75 ~~l~~~l~~~~v~~vv~---GdI~~~ 97 (218)
T PF01902_consen 75 EDLKEALKELKVEAVVF---GDIDSE 97 (218)
T ss_dssp HHHHHHHCTC--SEEE-----TTS-H
T ss_pred HHHHHHHHHcCCCEEEE---CcCCcH
Confidence 56777888888776654 445444
No 75
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=69.89 E-value=31 Score=35.31 Aligned_cols=39 Identities=13% Similarity=0.353 Sum_probs=28.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
..|++++|+++-+....+.|.+. +..++++++++...+.
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~---~~~g~~vvG~idd~~~ 166 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARN---PELGYRVVGFFDDRPD 166 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhC---ccCCcEEEEEEeCCCc
Confidence 56899999998777777777543 2246899999875443
No 76
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=69.71 E-value=24 Score=35.44 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=51.9
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc---
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE--- 125 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~--- 125 (378)
+|.| |.+ +...|..++... +.+-+.|||.+.-.. .-....+.+..+++|+.+. ++. .. +...
T Consensus 10 ~i~~-G~g--~l~~l~~~~~~~-----g~~~~lvvtd~~~~~----~g~~~~v~~~L~~~g~~~~-~~~~v~~~p~~~~v 76 (382)
T PRK10624 10 TAYF-GRG--AIGALTDEVKRR-----GFKKALIVTDKTLVK----CGVVAKVTDVLDAAGLAYE-IYDGVKPNPTIEVV 76 (382)
T ss_pred eEEE-CcC--HHHHHHHHHHhc-----CCCEEEEEeCcchhh----CcchHHHHHHHHHCCCeEE-EeCCCCCCcCHHHH
Confidence 5555 887 455565555531 345678888753211 0123457778888999865 332 11 1111
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCC
Q 048078 126 DAFLSNLRALQPELCITAAYGNILP 150 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp 150 (378)
.+..+.+++.++|++|.+|=|..+.
T Consensus 77 ~~~~~~~~~~~~D~IIaiGGGS~iD 101 (382)
T PRK10624 77 KEGVEVFKASGADYLIAIGGGSPQD 101 (382)
T ss_pred HHHHHHHHhcCCCEEEEeCChHHHH
Confidence 2344677888999999999776663
No 77
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=69.34 E-value=32 Score=31.53 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=55.8
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
.+.||+++|.+..+....+.+... ..++++++++...+...++ . -.|+| +.. -++
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~----~~g~~ivgv~D~d~~~~~~-----------~--i~g~~---v~~-----~~~ 137 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFE----KRGFKIVAAFDVDPEKIGT-----------K--IGGIP---VYH-----IDE 137 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcc----cCCcEEEEEEECChhhcCC-----------E--eCCeE---EcC-----HHH
Confidence 367999999998777666543211 2479999998654332211 0 13455 321 134
Q ss_pred HHHHHHhcCCcEEEEecCCCcC---ChhhhcCCCCceEEEccCCCCCCC
Q 048078 128 FLSNLRALQPELCITAAYGNIL---PSKFLNIPPMGTVNIHPSLLPLYR 173 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~il---p~~il~~~~~g~iNiHpSlLP~yR 173 (378)
+.+.+++.++|.++++.=..-. -..+++.-..+++|+.|-.+---+
T Consensus 138 l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~ 186 (213)
T PRK05472 138 LEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPE 186 (213)
T ss_pred HHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCC
Confidence 5566667778877766421111 122333333567787776554433
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=69.07 E-value=15 Score=38.40 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=38.7
Q ss_pred eeeEeeecCCCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCC
Q 048078 25 IRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRD 93 (378)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~g 93 (378)
--++||..++ ++..++.....++||+++|++.-+..+...|.+.. .+++|. |+-..+.+.|
T Consensus 5 ~~~~~~~~~~---~~~~~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~----~g~~Vt-v~E~~p~pgG 65 (491)
T PLN02852 5 RARTWLSRAL---SFSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAH----DGARVD-IIERLPTPFG 65 (491)
T ss_pred ehhhcccccc---ccccCCCCCCCCCcEEEECccHHHHHHHHHHHhhC----CCCeEE-EEecCCCCcc
Confidence 4467777633 33344555667889999999987777777787531 256653 5554444443
No 79
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=68.86 E-value=12 Score=32.09 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=60.4
Q ss_pred EEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHH
Q 048078 52 LVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 52 Ivf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~ 130 (378)
|+++| |+.++..+|+-+.+.. ..++|+++.++..- ..+.+.|++++.++.++.... .-+.+.+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~----d~f~v~~Lsa~~n~----------~~L~~q~~~f~p~~v~i~~~~--~~~~l~~ 64 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP----DKFEVVALSAGSNI----------EKLAEQAREFKPKYVVIADEE--AYEELKK 64 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT----TTEEEEEEEESSTH----------HHHHHHHHHHT-SEEEESSHH--HHHHHHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC----CceEEEEEEcCCCH----------HHHHHHHHHhCCCEEEEcCHH--HHHHHHH
Confidence 57788 4557778888776652 36999999886542 357888999988865432211 0111222
Q ss_pred HHHhcCCcEEEEecCCCcCChhhhcCCCC-ceEEEccCCCCCCCCchHHHHHHHcCC
Q 048078 131 NLRALQPELCITAAYGNILPSKFLNIPPM-GTVNIHPSLLPLYRGAAPVQRALQGGA 186 (378)
Q Consensus 131 ~l~~~~~Dliv~~~~~~ilp~~il~~~~~-g~iNiHpSlLP~yRG~~pi~wai~~g~ 186 (378)
.+....++.-+..|.--+. ++.+..+. -++|- ..-+.|..|...||.+|.
T Consensus 65 ~~~~~~~~~~v~~G~~~l~--~~~~~~~~D~vv~A----i~G~aGL~pt~~Ai~~gk 115 (129)
T PF02670_consen 65 ALPSKGPGIEVLSGPEGLE--ELAEEPEVDIVVNA----IVGFAGLKPTLAAIKAGK 115 (129)
T ss_dssp HHHHTTSSSEEEESHHHHH--HHHTHTT-SEEEE------SSGGGHHHHHHHHHTTS
T ss_pred HhhhcCCCCEEEeChHHHH--HHhcCCCCCEEEEe----CcccchHHHHHHHHHCCC
Confidence 2222334444444432222 11111111 12221 244578888889998885
No 80
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=68.79 E-value=16 Score=27.71 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=32.1
Q ss_pred CceEEEEecCcch-----HHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCc
Q 048078 49 KKPLVFLGSPQVS-----VNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPAD 115 (378)
Q Consensus 49 ~~rIvf~Gs~~~a-----~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~ 115 (378)
-|||+|.|+.+|. ...|..+++. +....+|+.- .++|- ..-..++|+++|++..
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~-------~~~~~lvhGg-a~~Ga-----D~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHAR-------HPDMVLVHGG-APKGA-----DRIAARWARERGVPVI 61 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHh-------CCCEEEEECC-CCCCH-----HHHHHHHHHHCCCeeE
Confidence 5899999998873 2344444443 2223355432 22231 2356789999999954
No 81
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=68.75 E-value=36 Score=34.82 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=45.2
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
...|++++|+++-+...++.|.+. +..++++++++.+.+.. + ..-.|+| |.. +.++
T Consensus 124 ~~~rvLIvGag~~a~~l~~~L~~~---~~~g~~vvG~idd~~~~-~-------------~~i~g~p---Vlg----~~~~ 179 (445)
T TIGR03025 124 NLRRVLIVGTGEAARELAAALSRN---PDLGYRVVGFVDDRPSD-R-------------VEVAGLP---VLG----KLDD 179 (445)
T ss_pred CCCcEEEEECCHHHHHHHHHHhhC---ccCCeEEEEEEeCCccc-c-------------cccCCCc---ccC----CHHH
Confidence 346899999998777777777653 23478999999643321 1 1224566 432 1234
Q ss_pred HHHHHHhcCCcEEEEec
Q 048078 128 FLSNLRALQPELCITAA 144 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~ 144 (378)
+.+.+++.++|-++++.
T Consensus 180 l~~~i~~~~id~ViIa~ 196 (445)
T TIGR03025 180 LVELVRAHRVDEVIIAL 196 (445)
T ss_pred HHHHHHhCCCCEEEEec
Confidence 55666667777666553
No 82
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=68.47 E-value=23 Score=32.78 Aligned_cols=24 Identities=17% Similarity=0.578 Sum_probs=20.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHc
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
+.+||+|+|.+.++......|++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~ 26 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT 26 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC
Confidence 368999999999988888888765
No 83
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=68.19 E-value=30 Score=32.32 Aligned_cols=172 Identities=17% Similarity=0.114 Sum_probs=93.3
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CCCCCc
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PERAGE 125 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~~~~~ 125 (378)
-+.+||++.|.+..+....+.|.+. +..|++|.- ....--...-+....+.++.++.|--. -+. ...+..
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D-~~g~~~~~~Gld~~~l~~~~~~~g~l~--~~~~~~~~~~ 99 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEA------GAKVVAVSD-SDGTIYNPDGLDVPALLAYKKEHGSVL--GFPGAERITN 99 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC-CCCeEECCCCCCHHHHHHHHHhcCCcc--cCCCceecCC
Confidence 3579999999999999999988874 688887743 211000001123445566656554210 110 011112
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCe
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPV 205 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~I 205 (378)
++ +...++|+++=++...+|..+-....+-+ +-+=.+-.|-- |-.-.++. +-|+.+. =|--.-+|.|
T Consensus 100 ~~----i~~~~~Dvlip~a~~~~i~~~~~~~l~a~-~I~egAN~~~t----~~a~~~L~---~rGi~~~-PD~~aNaGGv 166 (227)
T cd01076 100 EE----LLELDCDILIPAALENQITADNADRIKAK-IIVEAANGPTT----PEADEILH---ERGVLVV-PDILANAGGV 166 (227)
T ss_pred cc----ceeecccEEEecCccCccCHHHHhhceee-EEEeCCCCCCC----HHHHHHHH---HCCCEEE-ChHHhcCcch
Confidence 22 22458999999999999999998877653 33444555542 22223332 2244432 2223455666
Q ss_pred eEEEEEEe----CC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 048078 206 IAREKMEV----DD-QIKAPELLVLLFSEGSELLIRELPSI 241 (378)
Q Consensus 206 i~Q~~~~I----~~-~dt~~~L~~kl~~~~~~ll~~~l~~l 241 (378)
+.. .++. .. ..+..++..++.+...+.+.++++.-
T Consensus 167 i~s-~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a 206 (227)
T cd01076 167 TVS-YFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETA 206 (227)
T ss_pred hhh-HHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 641 1111 11 23556666777665556555555543
No 84
>PRK08462 biotin carboxylase; Validated
Probab=67.88 E-value=12 Score=38.17 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=31.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
..||+++|.++.++++++++.+. ++++++|.+.+|.
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~------G~~~v~~~~~~d~ 39 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEM------GKEAIAIYSTADK 39 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc------CCCEEEEechhhc
Confidence 46999999999999999998774 7899999887765
No 85
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=67.15 E-value=13 Score=39.25 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=75.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC--CCCCceecCCCCCCcH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR--GFPADLIFTPERAGED 126 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~--gIp~~~v~~~~~~~~~ 126 (378)
-.|+++.|.+++.....+.|.+. +.+++.|++...... ....++++.... |.... |+. ..+-.
T Consensus 363 GKrvaI~gdpd~~~~l~~fL~El------Gmepv~v~~~~~~~~------~~~~l~~ll~~~~~~~~~~-v~~--~~Dl~ 427 (515)
T TIGR01286 363 GKRFAIYGDPDFVMGLVRFVLEL------GCEPVHILCTNGTKR------WKAEMKALLAASPYGQNAT-VWI--GKDLW 427 (515)
T ss_pred CceEEEECCHHHHHHHHHHHHHC------CCEEEEEEeCCCCHH------HHHHHHHHHhcCCCCCccE-EEe--CCCHH
Confidence 47999999998888888888864 789998887643211 112234444332 32222 221 11335
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCC-------CceEEEccCCCCCCCCchHHHHHHHc
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPP-------MGTVNIHPSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~-------~g~iNiHpSlLP~yRG~~pi~wai~~ 184 (378)
++.+.|...+||++|--++++.+-.+ +..|- +.-++.|....=-|+|.--+...|.|
T Consensus 428 ~l~~~l~~~~~DlliG~s~~k~~a~~-~giPlir~gfPi~Dr~~~~r~p~~GY~G~l~ll~~I~n 491 (515)
T TIGR01286 428 HLRSLVFTEPVDFLIGNSYGKYIQRD-TLVPLIRIGFPIFDRHHLHRFPTIGYEGALQLLTTLVN 491 (515)
T ss_pred HHHHHHhhcCCCEEEECchHHHHHHH-cCCCEEEecCCeeEEECCCCCceeehhhHHHHHHHHHH
Confidence 66677888899999999988777443 22221 22345566666689998766655555
No 86
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=67.10 E-value=25 Score=35.97 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=69.8
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFL 129 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~ 129 (378)
-|++++|.+.......+.|.+. +.+++.+.|.-+.... .....+.....+-. +..-.+ -.+..
T Consensus 286 gkv~v~g~~~~~~~l~~~l~el------Gmevv~~~t~~~~~~~------~~~~~~~~~~~~~~---v~~~~d--l~~~~ 348 (422)
T TIGR02015 286 GRVTVSGYEGSELLVVRLLLES------GADVPYVGTAIPRTAW------GAEDKRWLEMLGVE---VKYRAS--LEDDM 348 (422)
T ss_pred CeEEEEcCCccHHHHHHHHHHC------CCEEEEEecCCCCccc------cHHHHHHHHhcCCC---ceeccC--HHHHH
Confidence 3999999998878888888774 7999999887543221 11233444444433 111111 12244
Q ss_pred HHHHhcCCcEEEEecCCCcCChhhhcCCCCceEE-EccCCCCCCCCchHHHH
Q 048078 130 SNLRALQPELCITAAYGNILPSKFLNIPPMGTVN-IHPSLLPLYRGAAPVQR 180 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iN-iHpSlLP~yRG~~pi~w 180 (378)
+.+++.+||++|.-+.++.+-.+ +..|-..+.+ +|...+--|||+.-+.-
T Consensus 349 ~~l~~~~pDllig~s~~~~~A~k-~gIP~vr~g~pi~~~~~~Gy~Ga~~l~~ 399 (422)
T TIGR02015 349 EAVLEFEPDLAIGTTPLVQFAKE-HGIPALYFTNLISARPLMGPAGAGSLLQ 399 (422)
T ss_pred HHHhhCCCCEEEcCCcchHHHHH-cCCCEEEecchhhhhhcccHHHHHHHHH
Confidence 77888999999988776666443 3444332222 36777779999755544
No 87
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=66.92 E-value=39 Score=33.57 Aligned_cols=102 Identities=12% Similarity=0.186 Sum_probs=54.7
Q ss_pred CCceEEEEecCcc--hHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChH----HHHHHHHCCCCCceecCCC
Q 048078 48 RKKPLVFLGSPQV--SVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSP----VAQYALDRGFPADLIFTPE 121 (378)
Q Consensus 48 ~~~rIvf~Gs~~~--a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~----v~~~A~~~gIp~~~v~~~~ 121 (378)
..+||+|+|-... +.+.+..+ .. .++++. +++ |+.-. + +.. +.++|++.|..+. + .+
T Consensus 155 ~gl~ia~vGD~~~~v~~Sl~~~~-~~-----~g~~v~-~~~-P~~~~-----p-~~~~~~~~~~~~~~~g~~~~-~--~~ 217 (334)
T PRK01713 155 SEISYVYIGDARNNMGNSLLLIG-AK-----LGMDVR-ICA-PKALL-----P-EASLVEMCEKFAKESGARIT-V--TD 217 (334)
T ss_pred CCcEEEEECCCccCHHHHHHHHH-HH-----cCCEEE-EEC-Cchhc-----C-CHHHHHHHHHHHHHcCCeEE-E--Ec
Confidence 4689999997521 22222322 22 256665 344 33210 0 112 2456666787733 1 11
Q ss_pred CCCcHHHHHHHHhcCCcEEEEecC------------------CCcCChhhhcCC-CCceEEEccCCCCCCCCc
Q 048078 122 RAGEDAFLSNLRALQPELCITAAY------------------GNILPSKFLNIP-PMGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 122 ~~~~~~~~~~l~~~~~Dliv~~~~------------------~~ilp~~il~~~-~~g~iNiHpSlLP~yRG~ 175 (378)
+ +.+.+ .++|++.+-.| .+.|.+++++.. +-.++-+|| ||.+||.
T Consensus 218 d-----~~~a~--~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~--lP~~~~~ 281 (334)
T PRK01713 218 D-----IDKAV--KGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC--LPAFHNS 281 (334)
T ss_pred C-----HHHHh--CCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC--CCCCCCc
Confidence 1 22333 36777766433 234667778765 567899998 5888875
No 88
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=66.73 E-value=31 Score=35.85 Aligned_cols=112 Identities=15% Similarity=0.204 Sum_probs=66.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|+++++.+.......+.|.+. +++++.+++....+. .-..+....+ +-..+. ++.+..++
T Consensus 324 Gk~vaI~~~~~~~~~la~~l~El------Gm~v~~~~~~~~~~~---------~~~~l~~~~~-~~~~v~--~d~~~~e~ 385 (475)
T PRK14478 324 GKRVLLYTGGVKSWSVVKALQEL------GMEVVGTSVKKSTDE---------DKERIKELMG-PDAHMI--DDANPREL 385 (475)
T ss_pred CCEEEEEcCCchHHHHHHHHHHC------CCEEEEEEEECCCHH---------HHHHHHHHcC-CCcEEE--eCCCHHHH
Confidence 46888887776667777777653 799998887643221 0111211122 111132 34456778
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEcc---CCCCCCCCchHHHHHH
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHP---SLLPLYRGAAPVQRAL 182 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHp---SlLP~yRG~~pi~wai 182 (378)
.+.+++.+||+++.-++.+.+..++ ...+++.+. ...=.|||..-+...|
T Consensus 386 ~~~i~~~~pDliig~s~~~~~a~k~----giP~~~~~~~~~~p~~Gy~G~~~l~~~i 438 (475)
T PRK14478 386 YKMLKEAKADIMLSGGRSQFIALKA----GMPWLDINQERHHAYAGYEGMVELVREI 438 (475)
T ss_pred HHHHhhcCCCEEEecCchhhhhhhc----CCCEEEccccccCCccchhhHHHHHHHH
Confidence 8888999999999988877665542 233454432 2333588865544333
No 89
>PRK06270 homoserine dehydrogenase; Provisional
Probab=66.35 E-value=21 Score=35.45 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=52.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCC----CCCCceEEEEEcCCC---CCCCCCCccCChHHHHHHHHCCCCCceecCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSS----PDSIFEVAAIVTQPP---SRRDRGRKVLPSPVAQYALDRGFPADLIFTPE 121 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~----~~~~~ei~~Vvt~~~---~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~ 121 (378)
.+||+++|.+..+...++.|.+.... ...+++|++|+.... .+.| .....+.+++++++... .+ +.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~G----i~~~~~~~~~~~~~~~~--~~-~~ 74 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDG----LDLELALKVKEETGKLA--DY-PE 74 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCC----CCHHHHHHHHhccCCcc--cC-cc
Confidence 68999999999988888887654100 012578888875321 1111 12334566676766441 11 11
Q ss_pred CCCcHHHHHHHHhcCCcEEEEecCC
Q 048078 122 RAGEDAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 122 ~~~~~~~~~~l~~~~~Dliv~~~~~ 146 (378)
.....++.+.|++.++|++|.+...
T Consensus 75 ~~~~~d~~ell~~~~~DvVvd~T~s 99 (341)
T PRK06270 75 GGGEISGLEVIRSVDADVVVEATPT 99 (341)
T ss_pred ccccCCHHHHhhccCCCEEEECCcC
Confidence 0001133456667789999987653
No 90
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=66.14 E-value=43 Score=33.41 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=67.9
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
+..|++++|.+.......+.|.+. +.+++.+++...... ...+...........+. ..+..+
T Consensus 278 ~g~~~~i~~~~~~~~~~~~~l~e~------G~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~d~~~ 339 (399)
T cd00316 278 GGKKVAIFGDGDLLLALARFLLEL------GMEVVAAGTTFGHKA---------DYERREELLGEGTEVVD---DGDLEE 339 (399)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHC------CCEEEEEEeCCCCHH---------HHHHHHHhcCCCCEEEe---CCCHHH
Confidence 367888888877666666666663 789888887543321 11112222333322222 224567
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEcc----CCCCCCCCchHHHHHHHc
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHP----SLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHp----SlLP~yRG~~pi~wai~~ 184 (378)
+.+.+++.+||+++..++.+-+..+. . ..++.++. ...--|+|..-+.-.+.|
T Consensus 340 ~~~~~~~~~pdl~ig~~~~~~~~~~~-~---ip~~~~~~p~~~~~~~Gy~G~~~l~~~i~~ 396 (399)
T cd00316 340 LEELIRELKPDLIIGGSKGRYIAKKL-G---IPLVRIGFPIHRRPYVGYEGALNLAEEIAN 396 (399)
T ss_pred HHHHHhhcCCCEEEECCcHHHHHHHh-C---CCEEEcCCccccCCccchhhHHHHHHHHHH
Confidence 77889999999999887655554432 2 22444443 556678888766655544
No 91
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=65.54 E-value=18 Score=29.74 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=48.9
Q ss_pred eEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCC-CCCceecCCCCCCcHHH
Q 048078 51 PLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG-FPADLIFTPERAGEDAF 128 (378)
Q Consensus 51 rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~g-Ip~~~v~~~~~~~~~~~ 128 (378)
||+++|. +..+...++.|.+. .++++++|++.+. ..|+ ..+..++ +... ++ .....+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~-~~~~----------~~~~~~~~~~~~-~~--~~~~~~~- 60 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASAR-SAGK----------RVSEAGPHLKGE-VV--LELEPED- 60 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechh-hcCc----------CHHHHCcccccc-cc--cccccCC-
Confidence 6899995 55555566666664 3689988876442 1121 2222332 3211 11 1111111
Q ss_pred HHHHHhcCCcEEEEecCCCcCChh---hhcCCCCceEEEccC
Q 048078 129 LSNLRALQPELCITAAYGNILPSK---FLNIPPMGTVNIHPS 167 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~---il~~~~~g~iNiHpS 167 (378)
++..+.|+++++-......+. ++.....|.+-+|.|
T Consensus 61 ---~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s 99 (122)
T smart00859 61 ---FEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLS 99 (122)
T ss_pred ---hhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECC
Confidence 112478999887765544442 333335667777776
No 92
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=65.52 E-value=64 Score=31.54 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHH----HHHHHHCCCCCceecCCCC
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPV----AQYALDRGFPADLIFTPER 122 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v----~~~A~~~gIp~~~v~~~~~ 122 (378)
-..+||+++|...-....+-.++.. .++++. ++.|+.. .+ +..+ ++++++.|..+. + ..+
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~-----~g~~v~--~~~P~~~-----~~-~~~~~~~~~~~~~~~g~~~~-~--~~d 209 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAK-----LGMDVV--VATPEGY-----EP-DADIVKKAQEIAKENGGSVE-L--THD 209 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHH-----cCCEEE--EECCchh-----cC-CHHHHHHHHHHHHHcCCeEE-E--EcC
Confidence 3468999999753223332223332 245543 3334321 11 1222 334566776632 1 111
Q ss_pred CCcHHHHHHHHhcCCcEEEEecC-----------------CCcCChhhhcCCCCceEEEccCCCCCCCC
Q 048078 123 AGEDAFLSNLRALQPELCITAAY-----------------GNILPSKFLNIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 123 ~~~~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~il~~~~~g~iNiHpSlLP~yRG 174 (378)
+.+.+ .++|++.+-.| .+.|.+++++..+.+++-+|| ||..||
T Consensus 210 -----~~~a~--~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp--lP~~rg 269 (304)
T TIGR00658 210 -----PVEAV--KGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC--LPAHRG 269 (304)
T ss_pred -----HHHHh--CCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC--CCCCCC
Confidence 12333 36787776543 236777888777778999998 477775
No 93
>PRK10206 putative oxidoreductase; Provisional
Probab=65.46 E-value=14 Score=36.52 Aligned_cols=71 Identities=14% Similarity=0.108 Sum_probs=42.4
Q ss_pred CceEEEEecCcchHH-HHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGSPQVSVN-VLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~-~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
.+||+++|.+.++.. .+..+.... .++++++|+...++ ..+.+++++... ++. +
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~------------~~~~~~~~~~~~--~~~-------~ 55 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAK------------PEEQAPIYSHIH--FTS-------D 55 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChh------------HHHHHHhcCCCc--ccC-------C
Confidence 479999999975433 345454321 25889888764322 135666776321 221 1
Q ss_pred HHHHHHhcCCcEEEEec
Q 048078 128 FLSNLRALQPELCITAA 144 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~ 144 (378)
+.+.|++.++|+++++.
T Consensus 56 ~~ell~~~~iD~V~I~t 72 (344)
T PRK10206 56 LDEVLNDPDVKLVVVCT 72 (344)
T ss_pred HHHHhcCCCCCEEEEeC
Confidence 33456667899988866
No 94
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=65.25 E-value=8.2 Score=31.52 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=13.9
Q ss_pred ceEEEEecCcchHHHHHHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFN 70 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~ 70 (378)
|||+++||+.--.....+|.+
T Consensus 1 MkVLviGsGgREHAia~~l~~ 21 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQ 21 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHhc
Confidence 899999999533334445544
No 95
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=64.02 E-value=48 Score=32.41 Aligned_cols=97 Identities=13% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCceEEEEecC---cchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCC
Q 048078 48 RKKPLVFLGSP---QVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAG 124 (378)
Q Consensus 48 ~~~rIvf~Gs~---~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~ 124 (378)
..+||+|+|-. ..+.+.+..+.. .++++. ++.|+.- . -+..+.+.|+++|..+. ..++
T Consensus 149 ~g~~va~vGD~~~~~v~~Sl~~~~a~------~g~~v~--~~~P~~~-----~-~~~~~~~~~~~~G~~v~---~~~d-- 209 (301)
T TIGR00670 149 DGLKIALVGDLKYGRTVHSLAEALTR------FGVEVY--LISPEEL-----R-MPKEILEELKAKGIKVR---ETES-- 209 (301)
T ss_pred CCCEEEEEccCCCCcHHHHHHHHHHH------cCCEEE--EECCccc-----c-CCHHHHHHHHHcCCEEE---EECC--
Confidence 46899999975 333333443322 256543 3334321 0 23456778888887732 1111
Q ss_pred cHHHHHHHHhcCCcEEEEecC----------------CCcCChhhhcCCCCceEEEccCC
Q 048078 125 EDAFLSNLRALQPELCITAAY----------------GNILPSKFLNIPPMGTVNIHPSL 168 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~----------------~~ilp~~il~~~~~g~iNiHpSl 168 (378)
+.+.+ .++|++..-.| .+.|.+++++..+.+++-+||.+
T Consensus 210 ---~~~a~--~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP 264 (301)
T TIGR00670 210 ---LEEVI--DEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLP 264 (301)
T ss_pred ---HHHHh--CCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCC
Confidence 22333 36788777544 33456677777777789999866
No 96
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=63.95 E-value=31 Score=34.76 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=63.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC--CCCCceecCCCCCCcH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR--GFPADLIFTPERAGED 126 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~--gIp~~~v~~~~~~~~~ 126 (378)
..||++.+.+......++.|.+ .+++++.++|.-.... ..+..++. ..+ . +. ++.++.
T Consensus 286 gkrv~I~~~~~~~~~~~~~l~e------lG~~v~~~~~~~~~~~----------~~~~~~~~~~~~~-~-~~--~~~~~~ 345 (406)
T cd01967 286 GKKVIIYTGGARSWHVIAALRE------LGMEVVAAGYEFGHDD----------DYERIRKILDEGT-L-LV--DDYNDL 345 (406)
T ss_pred CCEEEEEccCcchHHHHHHHHH------cCCEEEEEEEecCCHH----------HHHHHHhcCCCCc-E-EE--eCCCHH
Confidence 4677777666556666655554 3789887777532210 11111111 112 1 22 233456
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC---CCCCCCCchHHHHHHHc
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS---LLPLYRGAAPVQRALQG 184 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS---lLP~yRG~~pi~wai~~ 184 (378)
++.+.+++.+||+++..++.+.+..+. ..| ++.+++- ..=-|||..-+...+.|
T Consensus 346 ~~~~~~~~~~pdl~ig~~~~~~~a~~~-gip---~~~~~~~~~~~~~Gy~G~~~l~~~i~~ 402 (406)
T cd01967 346 ELEELVEKLKPDLILSGIKEKYVAQKL-GIP---FLDLHSERNGPYAGYEGFLNFARDIDT 402 (406)
T ss_pred HHHHHHHhcCCCEEEeCCcchHHHHhc-CCC---EEecCCCccCCcchhhHHHHHHHHHHH
Confidence 777888999999999888876665543 322 3333322 33368887666655544
No 97
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=63.68 E-value=8 Score=32.88 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=26.2
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
...+|||.|+|.+..+...-.+|.++ +++|++|.+..
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARA------GHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC
Confidence 55699999999999877777777664 68999888754
No 98
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=63.58 E-value=24 Score=33.68 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=27.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
+|||+++|.+.++...++.|.+. ..+++++|+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~ 33 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIV 33 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEE
Confidence 47999999999999999888764 2588888874
No 99
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=62.37 E-value=55 Score=33.45 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=67.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-+|++++|.+......-+.|.+. .+++++.|.|......- ....+..+. .++. |.. +.+-.++
T Consensus 290 Gkrvai~g~~~~~~~la~~L~ee-----lGm~~v~v~t~~~~~~~-----~~~~~~~l~--~~~~---v~~--~~D~~~l 352 (427)
T PRK02842 290 GKRVFFLPDSQLEIPLARFLSRE-----CGMELVEVGTPYLNRRF-----LAAELALLP--DGVR---IVE--GQDVERQ 352 (427)
T ss_pred CcEEEEECCchhHHHHHHHHHHh-----CCCEEEEeCCCCCCHHH-----HHHHHHhcc--CCCE---EEE--CCCHHHH
Confidence 45899999887777777888762 27999988875432110 000111111 2443 322 2334567
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHH
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRAL 182 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai 182 (378)
.+.+++.+||++|.-.... +|-.=.-.|-+-.++.|..++=-|+|..-+.-.+
T Consensus 353 ~~~i~~~~pDllig~~~~~-~pl~r~GfP~~dr~~~~~~p~~Gy~G~~~l~~~~ 405 (427)
T PRK02842 353 LDRIRALRPDLVVCGLGLA-NPLEAEGITTKWSIEFVFTPIHGFEQAGDLAELF 405 (427)
T ss_pred HHHHHHcCCCEEEccCccC-CchhhcCCceeEEEeeeeecccchhhHHHHHHHH
Confidence 7888999999999765322 2221111122345677777888899975554433
No 100
>CHL00194 ycf39 Ycf39; Provisional
Probab=62.36 E-value=26 Score=33.88 Aligned_cols=30 Identities=13% Similarity=0.382 Sum_probs=22.8
Q ss_pred ceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
|||+++| |+..+..+++.|++. +++|.+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~ 31 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLV 31 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEE
Confidence 6899999 566666677888875 68877765
No 101
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=62.34 E-value=40 Score=33.58 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=43.0
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
+++||+++|++..+...+.++.+. +++++.+-..++.+ ...+|... +. .+..+.+.
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~------G~~v~~~~~~~~~~-----------~~~~ad~~------~~-~~~~d~~~ 66 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL------GVEVIAVDRYANAP-----------AMQVAHRS------HV-IDMLDGDA 66 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCCc-----------hHHhhhhe------EE-CCCCCHHH
Confidence 578999999997777777776553 68887665554332 12333221 11 11122355
Q ss_pred HHHHHHhcCCcEEEEe
Q 048078 128 FLSNLRALQPELCITA 143 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~ 143 (378)
+.+.+++.++|+++..
T Consensus 67 l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 67 LRAVIEREKPDYIVPE 82 (395)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 6677777788877653
No 102
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=61.83 E-value=26 Score=40.11 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.4
Q ss_pred CCCceEEEEecCcchHHHHHHHHHc
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
.++.||+++|++.++..+.+.|.+.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~ 591 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV 591 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC
Confidence 3467999999999999999999764
No 103
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=61.68 E-value=23 Score=36.84 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCcc-----------------CChHHHHH
Q 048078 44 FSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKV-----------------LPSPVAQY 106 (378)
Q Consensus 44 ~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~-----------------~~~~v~~~ 106 (378)
.......||+++|.+--++.+.+.|++. ++.-+.|+-..++..||=... ...||-++
T Consensus 16 ~~~~~~~kIvIIGAG~AGLaAA~rLle~------gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~l 89 (498)
T KOG0685|consen 16 LKARGNAKIVIIGAGIAGLAAATRLLEN------GFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYEL 89 (498)
T ss_pred hhccCCceEEEECCchHHHHHHHHHHHh------CCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHH
Confidence 3334455999999998888888999964 566667776666655553211 34688899
Q ss_pred HHHCC-CCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCC
Q 048078 107 ALDRG-FPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPP 158 (378)
Q Consensus 107 A~~~g-Ip~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~ 158 (378)
|+++| ++ ++.... ....|.......++.+|.++++.++
T Consensus 90 a~~~g~~~---~~~~tg-----------~~~~~~~~~~~~g~~V~~~~~~~~~ 128 (498)
T KOG0685|consen 90 AKEYGDLK---LLEVTG-----------PAYVDNFHTRSNGEVVPEELLDELN 128 (498)
T ss_pred HHHhCccc---eeccCC-----------ccccceeEEEecCccCcHHHHHHHH
Confidence 99888 55 322111 1345666778889999999988653
No 104
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=61.57 E-value=51 Score=33.64 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=64.9
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCC-ceEEEEEcCCCC-CCCCCCccCChHHHHHHHHCCCCCce-e--cCCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSI-FEVAAIVTQPPS-RRDRGRKVLPSPVAQYALDRGFPADL-I--FTPERA 123 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~-~ei~~Vvt~~~~-~~grg~~~~~~~v~~~A~~~gIp~~~-v--~~~~~~ 123 (378)
..|+++.|.+.......+.|.+. + .+++++.+..+. ...+. ...+++. +.|..... + +..+..
T Consensus 293 Gk~~~i~~~~~~~~~~~~~l~el------G~~~v~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~ 360 (426)
T cd01972 293 GKKAIVETGAAYGHLLIAVLREL------GFGEVPVVLVFHHDPTYDRG-----DSEKDLL-EHGVDPEIDITKYTVSNG 360 (426)
T ss_pred CCEEEEEeCCccHHHHHHHHHHc------CCceEEEEEeccCchhhhcc-----hhHHHHh-cCCcccccccceeeecCC
Confidence 46888888888888888888764 7 788877552111 11111 1122222 34542110 1 222333
Q ss_pred CcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEcc---CCCCCCCCchHHH
Q 048078 124 GEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHP---SLLPLYRGAAPVQ 179 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHp---SlLP~yRG~~pi~ 179 (378)
+..++.+.|++.+||+++..+.++-.-... .....++++|. ..+--|+|.--+-
T Consensus 361 ~~~e~~~~l~~~~pDl~i~~~~~~~~~~~~--~~gip~~~~~~~~~~~~~Gy~G~~~l~ 417 (426)
T cd01972 361 QYYQFYNLLKRVKPDFIIFRHGGLFPDATV--YLGIPVVPLNDELNQPQFGYRGLLKIA 417 (426)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCccHHHHH--hcCCCEEeccccccCCcccHhHHHHHH
Confidence 346788999999999998765443322211 13344666665 2344677764443
No 105
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=61.39 E-value=38 Score=33.51 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..||.++||++.+..+.-.+.. .+.|+++|=-..+. |..+.|.+.- |. +..+.+++
T Consensus 12 a~kvmLLGSGELGKEvaIe~QR------LG~eViAVDrY~~A-----------PAmqVAhrs~-----Vi--~MlD~~al 67 (394)
T COG0027 12 ATKVMLLGSGELGKEVAIEAQR------LGVEVIAVDRYANA-----------PAMQVAHRSY-----VI--DMLDGDAL 67 (394)
T ss_pred CeEEEEecCCccchHHHHHHHh------cCCEEEEecCcCCC-----------hhhhhhhhee-----ee--eccCHHHH
Confidence 4579999999998887555543 47899888443333 4455554331 22 23345566
Q ss_pred HHHHHhcCCcEEEE
Q 048078 129 LSNLRALQPELCIT 142 (378)
Q Consensus 129 ~~~l~~~~~Dliv~ 142 (378)
.+.++..+||+||-
T Consensus 68 ~avv~rekPd~IVp 81 (394)
T COG0027 68 RAVVEREKPDYIVP 81 (394)
T ss_pred HHHHHhhCCCeeee
Confidence 67788888998874
No 106
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=61.31 E-value=15 Score=35.46 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC-----------CCCCCCCchHHHHHHHcCCcEEEEEEEE
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS-----------LLPLYRGAAPVQRALQGGAKETGVSLAF 195 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS-----------lLP~yRG~~pi~wai~~g~~~tGvTih~ 195 (378)
++-+.+++.+||++|+++-.+. +.=..+..+.-+|+..++ .++.++|...+-+.|.+.-...|+.+..
T Consensus 39 ~~~~~~~~~~pD~vVvi~~dH~-~~f~~~~~P~f~i~~~~~~~~~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~ 117 (277)
T cd07364 39 PARDWIKKNKPDVAIIVYNDHA-SAFDLDIIPTFAIGTAEEFQPADEGYGPRPVPDVQGHPDLAWHIAQSLILDDFDMTI 117 (277)
T ss_pred HHHHHHHHhCCCEEEEEcCchH-HhhcccCCCceEEeeccccccCccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEe
Confidence 5567888999999999854442 111222333345666552 2446899999999988776666776665
Q ss_pred ec-CCCCCCC
Q 048078 196 TV-RALDAGP 204 (378)
Q Consensus 196 ~~-~~~D~G~ 204 (378)
.+ -++|.|-
T Consensus 118 ~~~~~lDHG~ 127 (277)
T cd07364 118 VNEMDVDHGL 127 (277)
T ss_pred cCCCCCCcch
Confidence 43 3588883
No 107
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=61.24 E-value=39 Score=35.57 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=68.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|++++|....+...-+.|.+. .+.+++++.|..... ...+.+.....+-. .+.. + +..++
T Consensus 293 Gkrv~I~gd~~~a~~l~~~L~~E-----lGm~vv~~gt~~~~~--------~~~~~~~~~~~~~~--~~i~-~--D~~el 354 (519)
T PRK02910 293 GKRVFVFGDATHAVAAARILSDE-----LGFEVVGAGTYLRED--------ARWVRAAAKEYGDE--ALIT-D--DYLEV 354 (519)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHh-----cCCeEEEEecCCcch--------hHHHHHHHHhcCCC--eEEe-c--CHHHH
Confidence 45899999877777777777743 478998877743221 12355555555533 1221 2 23577
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCC------CCceEEEcc---CCCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIP------PMGTVNIHP---SLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~------~~g~iNiHp---SlLP~yRG~~pi~wai~~ 184 (378)
.+.+++.+||++|--.+.+.+.++ +..| |. .+..|+ +..=-|+|+.-+.-.+.|
T Consensus 355 ~~~i~~~~PdliiG~~~er~~a~~-lgiP~~~i~~Pv-~~r~~~~~~~p~~Gy~Ga~~l~d~i~~ 417 (519)
T PRK02910 355 EDAIAEAAPELVLGTQMERHSAKR-LGIPCAVISAPT-HVQDFPARYSPQMGFEGANVIFDTWYH 417 (519)
T ss_pred HHHHHhcCCCEEEEcchHHHHHHH-cCCCEEEecccc-eeecccCCCCCeeehhHHHHHHHHHHH
Confidence 788999999999976655544332 1221 11 122244 344568998766666555
No 108
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=59.44 E-value=19 Score=36.56 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=23.6
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
|+|+++|.+.++..+.+.|.+. +++++.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vi 29 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVI 29 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEE
Confidence 6899999999999999988764 5777644
No 109
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=59.07 E-value=29 Score=35.85 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=30.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
-.||+++|.++.+..+++++.+. +++++++.++++.
T Consensus 5 ~~~vLi~~~geia~~ii~aa~~l------G~~~v~~~s~~d~ 40 (467)
T PRK12833 5 IRKVLVANRGEIAVRIIRAAREL------GMRTVAACSDADR 40 (467)
T ss_pred CcEEEEECCcHHHHHHHHHHHHc------CCeEEEEECCCCC
Confidence 45999999999999999998874 7898888876553
No 110
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=58.73 E-value=32 Score=34.79 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=57.1
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCC--CCCCc--
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTP--ERAGE-- 125 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~--~~~~~-- 125 (378)
++.++||.+ +...|...... .+.+=++|||++.-.+ .-...++.+..++.||.+. ||.. .+...
T Consensus 7 p~~i~fG~g--~l~~l~~~~~~-----~g~~r~liVTd~~~~~----~g~~~~v~~~L~~~~i~~~-if~~v~p~P~~~~ 74 (377)
T COG1454 7 PTEILFGRG--SLKELGEEVKR-----LGAKRALIVTDRGLAK----LGLLDKVLDSLDAAGIEYE-VFDEVEPEPTIET 74 (377)
T ss_pred CceEEecCC--hHHHHHHHHHh-----cCCCceEEEECCcccc----chhHHHHHHHHHhcCCeEE-EecCCCCCCCHHH
Confidence 356778888 56767666653 2456688999875211 1134567888888998865 4431 11122
Q ss_pred -HHHHHHHHhcCCcEEEEecCCCcC
Q 048078 126 -DAFLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 126 -~~~~~~l~~~~~Dliv~~~~~~il 149 (378)
++-.+.++++++|.+|.+|=|-.+
T Consensus 75 v~~~~~~~~~~~~D~iIalGGGS~~ 99 (377)
T COG1454 75 VEAGAEVAREFGPDTIIALGGGSVI 99 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccHH
Confidence 234478889999999999987665
No 111
>PRK13530 arsenate reductase; Provisional
Probab=58.61 E-value=1.1e+02 Score=25.99 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=42.7
Q ss_pred CCceEEEEecCcchHHHH-HHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 48 RKKPLVFLGSPQVSVNVL-DALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L-~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
+++||+|+-+++..-+-+ ++|++.... ..+++ .+-.-.+ ......+.+..+++||+... ..+..+.+.
T Consensus 2 ~~~~vLFvC~~N~cRS~mAEal~~~~~~--~~~~v---~SAG~~~-----~~~~~~a~~~l~e~Gi~~~~-~~s~~l~~~ 70 (133)
T PRK13530 2 NKKTIYFLCTGNSCRSQMAEGWGKQYLG--DKWNV---YSAGIEA-----HGVNPNAIKAMKEVGIDISN-QTSDIIDND 70 (133)
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHHhcC--CCEEE---ECCCCCC-----CCCCHHHHHHHHHcCCCcCC-CccccCChh
Confidence 378999999888554444 566654211 12332 2211111 01234567778899999321 223333322
Q ss_pred HHHHHHHhcCCcEEEEec
Q 048078 127 AFLSNLRALQPELCITAA 144 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~ 144 (378)
. + ..+|++|++.
T Consensus 71 ~----~--~~~D~ii~m~ 82 (133)
T PRK13530 71 I----L--NNADLVVTLC 82 (133)
T ss_pred H----h--ccCCEEEEec
Confidence 1 1 3689999885
No 112
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=58.60 E-value=98 Score=30.26 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHH----HHHHHHCCCCCceecCCCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPV----AQYALDRGFPADLIFTPERA 123 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v----~~~A~~~gIp~~~v~~~~~~ 123 (378)
..+||+|+|...-....+-.++.. .++++. +++ |+... + +..+ ++++++.|..+. ..++
T Consensus 146 ~g~kva~vGD~~~v~~S~~~~~~~-----~g~~v~-~~~-P~~~~-----~-~~~~~~~a~~~~~~~g~~~~---~~~d- 208 (302)
T PRK14805 146 SKVKLAYVGDGNNVTHSLMYGAAI-----LGATMT-VIC-PPGHF-----P-DGQIVAEAQELAAKSGGKLV---LTSD- 208 (302)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHH-----cCCEEE-EEC-Cchhc-----C-CHHHHHHHHHHHHHcCCEEE---EEcC-
Confidence 468999999854222332223332 256643 333 33211 1 1223 345666787732 1111
Q ss_pred CcHHHHHHHHhcCCcEEEEecC-----------------CCcCChhhhcCCCCceEEEccCCCCCCCC
Q 048078 124 GEDAFLSNLRALQPELCITAAY-----------------GNILPSKFLNIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~il~~~~~g~iNiHpSlLP~yRG 174 (378)
. +.+ .++|++.+-.| .+.|.+++++..+.. +-+|| ||.+||
T Consensus 209 --~---~a~--~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~--lP~~Rg 266 (302)
T PRK14805 209 --I---EAI--EGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC--QPAHRG 266 (302)
T ss_pred --H---HHH--CCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECC--CCCCCC
Confidence 1 223 47888877333 245667777766555 78887 577776
No 113
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=58.05 E-value=17 Score=35.28 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC-----------CCCCCCCchHHHHHHHcCCcEEEEEEEE
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS-----------LLPLYRGAAPVQRALQGGAKETGVSLAF 195 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS-----------lLP~yRG~~pi~wai~~g~~~tGvTih~ 195 (378)
++-+.+++.+||++|+++-.+. ..=+++..+.-+|+..+. ..|.|+|...+-+.|.+.-...|+.+-.
T Consensus 39 ~i~~~i~~~~PDvvVii~~dH~-~~f~~d~~P~f~Ig~~~~~~~~~~~~g~~~v~~~~g~~eLA~~i~~~l~~~g~~~~~ 117 (284)
T PRK13366 39 FSKQWEKEEKPDVIFLVYNDHA-TAFSLDIIPTFAIGTAAEYQPADEGWGPRPVPKVIGHPDLAAHIAQSVIQDDFDLTI 117 (284)
T ss_pred HHHHHHHHhCCCEEEEEcCCcH-HhhcccCCCceEEeeCceecCcccccCCCCCCCCCCCHHHHHHHHHHHHHCCCCEee
Confidence 5567888999999998854442 111222222223333333 2467889888999998776677776655
Q ss_pred ec-CCCCCCCe
Q 048078 196 TV-RALDAGPV 205 (378)
Q Consensus 196 ~~-~~~D~G~I 205 (378)
.+ -++|.|-.
T Consensus 118 ~~~~~lDHG~~ 128 (284)
T PRK13366 118 VNKMDVDHGLT 128 (284)
T ss_pred cCCCCCCccHH
Confidence 43 34777753
No 114
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=57.49 E-value=64 Score=29.29 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCCCCCC--CccCChHHHHHHHHCCCCCceecCCCC--CCcHHHHHHHHhcC---CcEEEE
Q 048078 78 IFEVAAIVTQPPSRRDRG--RKVLPSPVAQYALDRGFPADLIFTPER--AGEDAFLSNLRALQ---PELCIT 142 (378)
Q Consensus 78 ~~ei~~Vvt~~~~~~grg--~~~~~~~v~~~A~~~gIp~~~v~~~~~--~~~~~~~~~l~~~~---~Dliv~ 142 (378)
+++|+++++..+...++. .......++..|+..|||...+..+.+ ...+++.+.|++.. ++.++.
T Consensus 23 G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~ 94 (194)
T cd01994 23 GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVF 94 (194)
T ss_pred CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEE
Confidence 688888876544322221 111234677899999999654322111 11234444554433 665543
No 115
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=57.38 E-value=30 Score=30.66 Aligned_cols=18 Identities=6% Similarity=0.283 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCcEEEEe
Q 048078 126 DAFLSNLRALQPELCITA 143 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~ 143 (378)
+++++.+++.+||++++.
T Consensus 89 ~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 89 EEIIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 346677777888877653
No 116
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.05 E-value=28 Score=30.86 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=12.3
Q ss_pred cHHHHHHHHhcCCcEEEE
Q 048078 125 EDAFLSNLRALQPELCIT 142 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~ 142 (378)
++++++.|++.+||++++
T Consensus 90 ~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 90 EEAIINRINASGPDIVFV 107 (172)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 456667777777777764
No 117
>PLN02688 pyrroline-5-carboxylate reductase
Probab=56.82 E-value=30 Score=32.52 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=20.4
Q ss_pred ceEEEEecCcchHHHHHHHHHc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
|||+|+|.+..+....+.|+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~ 22 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS 22 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC
Confidence 7899999999999999999875
No 118
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=56.38 E-value=38 Score=31.34 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=28.9
Q ss_pred CCCCCCCCCceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 41 PSAFSVSRKKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 41 ~~~~~~~~~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
++..+...+++|+++| |+.++..+.+.|++. +++|.+++
T Consensus 9 ~~~~~~~~~~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~ 48 (251)
T PLN00141 9 EEDAENVKTKTVFVAGATGRTGKRIVEQLLAK------GFAVKAGV 48 (251)
T ss_pred ccccccccCCeEEEECCCcHHHHHHHHHHHhC------CCEEEEEe
Confidence 4455666678999999 577777888888874 57776654
No 119
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=56.36 E-value=31 Score=35.79 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=30.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
-.||+++|.++.+..++++..+. ++++++|.++++.
T Consensus 2 ~kkiLi~~~ge~a~~~i~aa~~l------G~~~v~v~~~~d~ 37 (478)
T PRK08463 2 IHKILIANRGEIAVRVIRACRDL------HIKSVAIYTEPDR 37 (478)
T ss_pred ccEEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCcc
Confidence 35999999999999999988774 7999999987754
No 120
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=56.01 E-value=53 Score=34.04 Aligned_cols=117 Identities=14% Similarity=0.235 Sum_probs=67.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-+|++++|.++.+...-+.|.+. +.+++.+++....+.. .....+.++....+.+..++.. .+-.++
T Consensus 312 Gkrvai~~~~~~~~~l~~~l~el------Gm~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~vv~~---~d~~~l 378 (461)
T TIGR02931 312 DKRVAIYGNPDLVIGLAEFCLDL------EMKPVLLLLGDDNSGY----VDDPRIKALQENVDYDMEIVTN---ADFWEL 378 (461)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHC------CCEEEEEEECCCCccc----chhHHHHHHHhhCCCCceEEeC---CCHHHH
Confidence 46899999887777777777653 6888876654321110 0112234444444333332322 234566
Q ss_pred HHHHHh--cCCcEEEEecCCCcCChhhhcCCCCceEE----------EccCCCCCCCCchHHHHHH
Q 048078 129 LSNLRA--LQPELCITAAYGNILPSKFLNIPPMGTVN----------IHPSLLPLYRGAAPVQRAL 182 (378)
Q Consensus 129 ~~~l~~--~~~Dliv~~~~~~ilp~~il~~~~~g~iN----------iHpSlLP~yRG~~pi~wai 182 (378)
.+.+++ .+||+++..++.+.+..++ ..| ++. .|....--|||.--+..-|
T Consensus 379 ~~~i~~~~~~~Dliig~s~~~~~a~k~-gip---~~~~g~Pv~dr~g~~~~~~~GY~G~~~l~~~i 440 (461)
T TIGR02931 379 ESRIKNQGLELDLILGHSKGRFISIDY-NIP---MVRVGFPTYDRAGMYRHPVVGYGGAIWLAEQM 440 (461)
T ss_pred HHHHHhcCCCCCEEEECcchHHHHHHc-CCC---EEEecCcchhcccccCCCCccchhHHHHHHHH
Confidence 677775 6899999998887776653 222 232 2334556899975544433
No 121
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=56.00 E-value=22 Score=34.35 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC-----------CCCCCCchHHHHHHHcCCcEEEEEEEE
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL-----------LPLYRGAAPVQRALQGGAKETGVSLAF 195 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl-----------LP~yRG~~pi~wai~~g~~~tGvTih~ 195 (378)
++-+.+++.+||++|+++-.+..-- +.+..+.=+|+..+++ ++.++|...+-+.|...-...|+.+-.
T Consensus 39 ~~~~~i~~~~PD~iVvi~~dH~~~f-~~d~~p~f~Ig~~~~~~~~d~~~~~~~~~~~~g~~~LA~~i~~~~~~~g~~~~~ 117 (277)
T cd07950 39 PVKQWLAEQKPDVLFMVYNDHVTSF-FFDHYSAFALGVGDSYEVADEGGGPRDLPPIRGHAALAQHIAESLVADEFDLTF 117 (277)
T ss_pred HHHHHHHHhCCCEEEEEcCcHHHHh-ccccCCcEEEEecccccccccccCCccCCCCCCCHHHHHHHHHHHHhcCCCeee
Confidence 4567888999999999994332211 1232233355655555 367888888889887764444544433
Q ss_pred e-cCCCCCCCe
Q 048078 196 T-VRALDAGPV 205 (378)
Q Consensus 196 ~-~~~~D~G~I 205 (378)
. +-++|.|-.
T Consensus 118 ~~~~~lDHG~~ 128 (277)
T cd07950 118 FQDKPLDHGCF 128 (277)
T ss_pred ccCCCCCceee
Confidence 3 345777743
No 122
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=55.92 E-value=51 Score=37.35 Aligned_cols=114 Identities=19% Similarity=0.191 Sum_probs=68.3
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
...|+++++.+.......+.|.+. +.+|+++-+...... ....+.++.. .+.. +. ++.+..+
T Consensus 319 ~GKrv~i~~g~~~~~~la~~l~el------Gmevv~~g~~~~~~~------d~~~~~~~~~-~~~~---vi--~~~d~~e 380 (917)
T PRK14477 319 EGKRVVLFTGGVKTWSMVNALREL------GVEVLAAGTQNSTLE------DFARMKALMH-KDAH---II--EDTSTAG 380 (917)
T ss_pred cCCEEEEECCCchHHHHHHHHHHC------CCEEEEEcCCCCCHH------HHHHHHHhcC-CCCE---EE--ECCCHHH
Confidence 356899998887777777777653 789877544322110 0011111111 1222 32 2334567
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEcc---CCCCCCCCchHHHHHHH
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHP---SLLPLYRGAAPVQRALQ 183 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHp---SlLP~yRG~~pi~wai~ 183 (378)
+.+.+++.+||+++.-+..+.+-.+. ...++.+|+ ...--|+|.--+...|.
T Consensus 381 l~~~i~~~~pDLlig~~~~~~~a~k~----giP~~~~~~~~~~p~~GY~G~~~l~~~l~ 435 (917)
T PRK14477 381 LLRVMREKMPDLIVAGGKTKFLALKT----RTPFLDINHGRSHPYAGYEGMVTFARQLD 435 (917)
T ss_pred HHHHHHhcCCCEEEecCchhhHHHHc----CCCeEEccCCccCCccchhhHHHHHHHHH
Confidence 88889999999999988777765543 445777775 34557899644444433
No 123
>PRK06849 hypothetical protein; Provisional
Probab=55.79 E-value=61 Score=32.41 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=26.5
Q ss_pred CCceEEEEecCc-chHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 48 RKKPLVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 48 ~~~rIvf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
.++||+++|.+. .+....+.|.++ +++|+++-+++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~------G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA------GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 579999999885 466777877775 68888775554
No 124
>PLN02712 arogenate dehydrogenase
Probab=55.76 E-value=58 Score=35.52 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=25.5
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEE
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAA 83 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~ 83 (378)
.++++||+|+|.|.++....+.|.+. +++|.+
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~------G~~V~~ 80 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQ------GHTVLA 80 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHC------CCEEEE
Confidence 45679999999999999888888764 467644
No 125
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=55.69 E-value=71 Score=32.54 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=54.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEE-EEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVA-AIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~-~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
..+|-+.+.+.-+..+++.|.+. ++.+. +|+...|. =.+.|+..|+++...-....+.++.
T Consensus 267 ~~~v~v~~~~~~~~~~~~~L~~~------g~~v~~g~l~~~d~------------d~~~a~~l~~~~~~~~pf~~i~~~~ 328 (402)
T PRK09536 267 DTRVHVVGGGQPAARAVSRLVAA------GASVSVGPVPEGDT------------AAETAARVGCEAVTVPPFKPIEDST 328 (402)
T ss_pred CceEEEECCCCcHHHHHHHHHHC------CCeEEEecCcCcch------------hHHHHHHcCCCEEeeCCCCCCCHHH
Confidence 45677777776677888888875 67775 56655443 2578999999954322345566666
Q ss_pred HHHHHHhc-CCcEEEEecC
Q 048078 128 FLSNLRAL-QPELCITAAY 145 (378)
Q Consensus 128 ~~~~l~~~-~~Dliv~~~~ 145 (378)
+.+..+.. ++|.+|++++
T Consensus 329 ~~~a~~~~~~~~~vi~~~~ 347 (402)
T PRK09536 329 RAEATDLIIAADAVVAAGV 347 (402)
T ss_pred HHHHHHHHHhCCEEEECCC
Confidence 66555544 7999999886
No 126
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=55.15 E-value=24 Score=37.84 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=51.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
+.+|+++|.+.++..+.+.|.+. +++++.+=.+++ ..+.+++.|.+ ++. .+..++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~~-------------~v~~~~~~g~~---v~~-GDat~~~~ 456 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN------KMRITVLERDIS-------------AVNLMRKYGYK---VYY-GDATQLEL 456 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC------CCCEEEEECCHH-------------HHHHHHhCCCe---EEE-eeCCCHHH
Confidence 57899999999999888888764 566654444332 24566788988 543 34556777
Q ss_pred HHHHHhcCCcEEEEec
Q 048078 129 LSNLRALQPELCITAA 144 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~ 144 (378)
++...-.++|.+|++.
T Consensus 457 L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 457 LRAAGAEKAEAIVITC 472 (601)
T ss_pred HHhcCCccCCEEEEEe
Confidence 7777667888877654
No 127
>PLN02256 arogenate dehydrogenase
Probab=54.39 E-value=51 Score=32.21 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=25.8
Q ss_pred CCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEE
Q 048078 45 SVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAA 83 (378)
Q Consensus 45 ~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~ 83 (378)
...++++|+|+|.|.++......|.+. +++|.+
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~------G~~V~~ 64 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQ------GHTVLA 64 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhC------CCEEEE
Confidence 456789999999999988888888764 466654
No 128
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=54.15 E-value=77 Score=31.85 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=23.9
Q ss_pred CCCceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 47 SRKKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 47 ~~~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
...+||++.|. +.++..+.+.|++. +++|+++.-
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~------G~~V~~l~R 92 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRR------GYNVVAVAR 92 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEEe
Confidence 34679999995 54566677888874 578877653
No 129
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.08 E-value=37 Score=34.44 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC-CCCCceecCCCCCCcH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR-GFPADLIFTPERAGED 126 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~-gIp~~~v~~~~~~~~~ 126 (378)
.+.+|+++|.+.++....+.|.+. +++++.|=.+++ .+.++.++. +++ +..- +..+.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~~------------~~~~~~~~~~~~~---~i~g-d~~~~ 287 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDPE------------RAEELAEELPNTL---VLHG-DGTDQ 287 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH------------HHHHHHHHCCCCe---EEEC-CCCCH
Confidence 468999999999999988888763 566644433322 244555543 565 3332 33455
Q ss_pred HHHHHHHhcCCcEEEEe
Q 048078 127 AFLSNLRALQPELCITA 143 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~ 143 (378)
+.++...-.++|.++++
T Consensus 288 ~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 288 ELLEEEGIDEADAFIAL 304 (453)
T ss_pred HHHHhcCCccCCEEEEC
Confidence 55555555578877654
No 130
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=54.06 E-value=39 Score=34.72 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=67.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|+++.|.+.......+.|.+ .+++++++++....+ .. ++ ++...++. . +-.++
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~e------lGm~v~~~~~~~~~~-----------~~---~~--~~~~~~~~-~--D~~~l 365 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTS------MGAQIVAAVTTTGSP-----------LL---QK--LPVETVVI-G--DLEDL 365 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHH------CCCEEEEEEeCCCCH-----------HH---Hh--CCcCcEEe-C--CHHHH
Confidence 5789998887766777777765 379999998865431 11 11 22222322 2 22577
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCC----CceEEEc---cCCCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPP----MGTVNIH---PSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~----~g~iNiH---pSlLP~yRG~~pi~wai~~ 184 (378)
.+.+++.++|+++.-++.+.+..+ +..|- +.+...| -...=-|||..-+...|.|
T Consensus 366 ~~~i~~~~~dliig~s~~k~~A~~-l~ip~ir~g~Pi~dr~~~~~~~~~Gy~G~~~l~~~i~n 427 (432)
T TIGR01285 366 EDLACAAGADLLITNSHGRALAQR-LALPLVRAGFPLFDQLGSQRRCRIGYRGTRDFLFDLAN 427 (432)
T ss_pred HHHHhhcCCCEEEECcchHHHHHH-cCCCEEEecCCccccccccccCeeehHHHHHHHHHHHH
Confidence 788889999999999998877665 23221 1111333 3345567887665555544
No 131
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=54.00 E-value=63 Score=31.33 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=50.2
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
...||+++|.+..+......|... +.+|. |+...+ .-.+.+++.|.. ... .++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~------Ga~V~-v~~r~~------------~~~~~~~~~G~~---~~~-----~~~ 203 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL------GANVT-VGARKS------------AHLARITEMGLS---PFH-----LSE 203 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC------CCEEE-EEECCH------------HHHHHHHHcCCe---eec-----HHH
Confidence 367999999998877777777653 45543 332221 124566777765 221 122
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceE
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTV 162 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~i 162 (378)
+.+.+ .+.|++|...=..++.++.++..+.+.+
T Consensus 204 l~~~l--~~aDiVI~t~p~~~i~~~~l~~~~~g~v 236 (296)
T PRK08306 204 LAEEV--GKIDIIFNTIPALVLTKEVLSKMPPEAL 236 (296)
T ss_pred HHHHh--CCCCEEEECCChhhhhHHHHHcCCCCcE
Confidence 33333 3689999865445566666655544433
No 132
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=53.94 E-value=20 Score=36.58 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=28.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
-.||+++|++..+..+++++.+. +++++++.++++
T Consensus 2 ~~~ililg~g~~~~~~~~~a~~l------G~~~v~~~~~~~ 36 (450)
T PRK06111 2 FQKVLIANRGEIAVRIIRTCQKL------GIRTVAIYSEAD 36 (450)
T ss_pred cceEEEECCcHHHHHHHHHHHHc------CCeEEEEechhh
Confidence 36999999999999999888774 788888776544
No 133
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=53.68 E-value=66 Score=33.30 Aligned_cols=121 Identities=12% Similarity=0.204 Sum_probs=64.8
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-+|+++.|.+......-+.|.+ .+.+++++++..+.... .....++++....+....++.. .+-.++
T Consensus 305 Gkrv~i~g~~~~~~~l~~fl~e------lGm~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~vi~~---~d~~e~ 371 (454)
T cd01973 305 NKKVAIFGHPDLVIGLAEFCLE------VEMKPVLLLLGDDNSKY----KKDPRIKALKEKADYDMEIVTN---ADLWEL 371 (454)
T ss_pred CCeEEEEcCHHHHHHHHHHHHH------CCCeEEEEEECCCCccc----chhHHHHHHHhhcCCCceEEEC---CCHHHH
Confidence 4588888877665555555554 36888877654322111 0111233443444443332332 234566
Q ss_pred HHHHHh--cCCcEEEEecCCCcCChhhhcCCCCc-------eEEEccCCCCCCCCchHHHHHHH
Q 048078 129 LSNLRA--LQPELCITAAYGNILPSKFLNIPPMG-------TVNIHPSLLPLYRGAAPVQRALQ 183 (378)
Q Consensus 129 ~~~l~~--~~~Dliv~~~~~~ilp~~il~~~~~g-------~iNiHpSlLP~yRG~~pi~wai~ 183 (378)
.+.+++ .+||+++.-++.+.+..++ ..|-.. -+..|....=-|||.--+-.-|.
T Consensus 372 ~~~i~~~~~~~dliig~s~~~~~A~~~-gip~~~~g~Pv~dr~~~~~~~~~GY~G~~~l~~~i~ 434 (454)
T cd01973 372 EKRIKNKGLELDLILGHSKGRYIAIDN-NIPMVRVGFPTFDRAGLYRHPVIGYRGAMWLGEAIA 434 (454)
T ss_pred HHHHHhcCCCCCEEEECCccHHHHHHc-CCCEEEecCCeeeeccccCCCCCchHHHHHHHHHHH
Confidence 677776 4699999988887776652 322110 12222334457888755444433
No 134
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=53.23 E-value=62 Score=30.27 Aligned_cols=89 Identities=19% Similarity=0.112 Sum_probs=49.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCC--CccCChHHHHHHHHCCCCCceecCCCCC---C
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRG--RKVLPSPVAQYALDRGFPADLIFTPERA---G 124 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg--~~~~~~~v~~~A~~~gIp~~~v~~~~~~---~ 124 (378)
||++.+=|+ +...+-+|+.+.+ .+++|..+++-.+....+- ..+.-.-+...|+..|||+.... ..-. .
T Consensus 1 mk~~aL~SG--GKDS~~Al~~a~~---~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~-~~g~~e~e 74 (223)
T COG2102 1 MKVIALYSG--GKDSFYALYLALE---EGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFD-TSGEEERE 74 (223)
T ss_pred CcEEEEEec--CcHHHHHHHHHHH---cCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEe-cCccchhh
Confidence 455555555 3444445544332 3799998776444322111 11223456778999999943221 2211 2
Q ss_pred cHHHHHHHHhcCCcEEEEec
Q 048078 125 EDAFLSNLRALQPELCITAA 144 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~ 144 (378)
-+++.+.|+..++|.+++-+
T Consensus 75 ve~L~~~l~~l~~d~iv~Ga 94 (223)
T COG2102 75 VEELKEALRRLKVDGIVAGA 94 (223)
T ss_pred HHHHHHHHHhCcccEEEEch
Confidence 35666788889999988733
No 135
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=52.95 E-value=94 Score=31.36 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=63.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.||+++|.+......-+.|.+. +++++.+.|.-.... ......+... .++. |. +..+-.++
T Consensus 276 Gkrv~i~g~~~~~~~la~~L~el------Gm~vv~~~t~~~~~~------~~~~~~~~l~-~~~~---v~--~~~d~~~l 337 (396)
T cd01979 276 GKSIFFMGDNLLEIPLARFLTRC------GMIVVEVGTPYLDKR------FQAAELELLP-PMVR---IV--EKPDNYRQ 337 (396)
T ss_pred CCEEEEECCchHHHHHHHHHHHC------CCEEEeeCCCcCChH------HHHHHHHhcC-CCCe---EE--ECCCHHHH
Confidence 45899998887777777777763 799988866422110 0011111111 2332 32 22344667
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcC--CCCceEEEccCCCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNI--PPMGTVNIHPSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~--~~~g~iNiHpSlLP~yRG~~pi~wai~~ 184 (378)
.+.+++.+||++|...+ +.-.++.. |-+--+..+--..=-|||+.-+.--+.|
T Consensus 338 ~~~i~~~~pDlli~~~~---~a~pl~r~G~P~~dr~~~~~~~~~Gy~g~~~l~~~~~~ 392 (396)
T cd01979 338 LDRIRELRPDLVVTGLG---LANPLEARGITTKWSIEFTFAQIHGFTNARDLAELFTR 392 (396)
T ss_pred HHHHHhcCCCEEEeccc---ccCcHHhCCCcceeecceeeeccccHhhHHHHHHHhhc
Confidence 78899999999997422 32233331 2222344444455568887665554443
No 136
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=52.91 E-value=55 Score=33.24 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=71.7
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
.||+++|| |+++..+|+-+.+.. ..++|+++.++..- .-+.+.+++++-.+.++.. .....++
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~----~~f~v~~Laa~~n~----------~~L~~q~~~f~p~~v~i~d--~~~~~~l 65 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP----DHFQVVALSAGKNV----------ALMVEQILEFRPKFVAIDD--EASLKDL 65 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc----cccEEEEEEcCCCH----------HHHHHHHHHcCCCEEEEcC--HHHHHHH
Confidence 48999995 557777777665432 25999999876542 3578888888876543321 1001112
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCC-ceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCC--CCCCCe
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPM-GTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRA--LDAGPV 205 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~-g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~--~D~G~I 205 (378)
.+.+.+.+.+.-|..|-.-++ ++.+.+.. -++| -+-.+.|..|...||..|. ++=..+.+ +-.|++
T Consensus 66 ~~~l~~~~~~~~v~~G~~~l~--~l~~~~~~D~vv~----AivG~aGL~pt~~Ai~~gk-----~iaLANKEsLV~aG~l 134 (389)
T TIGR00243 66 KTMLQQQGSRTEVLVGEEGIC--EMAALEDVDQVMN----AIVGAAGLLPTLAAIRAGK-----TIALANKESLVTAGHL 134 (389)
T ss_pred HHHhhcCCCCcEEEECHHHHH--HHHcCCCCCEEEE----hhhcHhhHHHHHHHHHCCC-----cEEEechhHHHhhHHH
Confidence 222211122222333322222 22222211 1222 2355788999999999885 34455544 667777
Q ss_pred eEE
Q 048078 206 IAR 208 (378)
Q Consensus 206 i~Q 208 (378)
+.+
T Consensus 135 i~~ 137 (389)
T TIGR00243 135 FLD 137 (389)
T ss_pred HHH
Confidence 643
No 137
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=52.65 E-value=23 Score=29.26 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=27.1
Q ss_pred eEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 51 PLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 51 rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
||+++| |+..+...++.|.+. ..++++.++....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeecc
Confidence 799999 887777777777774 4799999988765
No 138
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=52.60 E-value=65 Score=31.98 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=23.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEE
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAA 83 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~ 83 (378)
.++|+|+|.+..+....+.|.+. +++|+.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~s------G~~Vvv 45 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDS------GVDVVV 45 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHC------CCEEEE
Confidence 46899999999999898988875 566654
No 139
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=52.51 E-value=52 Score=32.66 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=27.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
++||++.|.|.++...++.+.+. .++++++|+-
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d 33 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAK 33 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEEC
Confidence 47999999999998888887653 4799999885
No 140
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=52.38 E-value=67 Score=32.83 Aligned_cols=119 Identities=15% Similarity=0.194 Sum_probs=70.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|++++|.+..+...-+.|.+. .+.+++++++....+... ...+.+..++.++....++. .+ -.++
T Consensus 293 ~k~vai~~~~~~~~~l~~~L~~e-----lGm~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~-~D--~~~~ 359 (427)
T cd01971 293 PRRFAVIADSTYALGLARFLVNE-----LGWVPAKQVITDNPPEKY-----RSAIENEFEAEGVSAEVVFS-ED--GYAI 359 (427)
T ss_pred CceEEEECChHHHHHHHHHHHHh-----cCCceEEEEecCCCCHHH-----HHHHHHHHHhcCCCCcEEEe-cC--HHHH
Confidence 47899999888777777777643 378888887643322110 01233333345665443332 22 2366
Q ss_pred HHHHHhcC----CcEEEEecCCCcCChhhhcCCCCceEEEc---------cCCCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQ----PELCITAAYGNILPSKFLNIPPMGTVNIH---------PSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~----~Dliv~~~~~~ilp~~il~~~~~g~iNiH---------pSlLP~yRG~~pi~wai~~ 184 (378)
.+.+++.+ +|+++--++.+.+-.++ .. .++.++ ....=-|||.--+...|.|
T Consensus 360 ~~~i~~~~~~~~~dliig~s~~~~~a~~~-~i---p~i~~~~P~~dr~~~~~~~~Gy~G~~~l~~~i~n 424 (427)
T cd01971 360 GQSLRQSDFKYKPPIIFGSSWERDLAKEL-GG---KILEVSFPVTNRVVLNRGYAGYRGALTLLEDIYT 424 (427)
T ss_pred HHHHHhCCCCCCCCEEEechHHHHHHHHc-CC---CeEEEeCCCCceeeccCCccchhhHHHHHHHHHh
Confidence 67777775 99999999887665532 22 123322 3344568887766666655
No 141
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=52.02 E-value=37 Score=32.26 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=50.4
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCC--ceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC---CCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSI--FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT---PER 122 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~--~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~---~~~ 122 (378)
..-+|+-+|..+|+..-|+.|++...-.... +++...+ ..|..+.++|.++.|. ++. |..
T Consensus 167 ~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cC------------vvPpdLqafa~~hdiQ---LltHsDP~~ 231 (285)
T KOG3023|consen 167 GEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCC------------VVPPDLQAFADRHDIQ---LLTHSDPSA 231 (285)
T ss_pred ccCceeeeeecccCHHHHHHHHhhhccccccceeeccccc------------cCCHHHHHHhhhccee---eeecCCchh
Confidence 3569999999999999999999853221111 1221111 1244689999999999 433 221
Q ss_pred -CCcHHHHHHHHhcCCcEE
Q 048078 123 -AGEDAFLSNLRALQPELC 140 (378)
Q Consensus 123 -~~~~~~~~~l~~~~~Dli 140 (378)
....+|.+.+...+||+.
T Consensus 232 llse~~f~e~~~~sqpdi~ 250 (285)
T KOG3023|consen 232 LLSESEFTEVIHKSQPDIP 250 (285)
T ss_pred cCChhhhhhhhhccCcccC
Confidence 234567777777777764
No 142
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=51.97 E-value=61 Score=33.24 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
...|++++|.|+.+..+.+.|.+. ++.-+.| +++.. ....++|.+.|.. +... ++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~------g~~~i~I-aNRT~----------erA~~La~~~~~~---~~~l-----~e 231 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK------GVKKITI-ANRTL----------ERAEELAKKLGAE---AVAL-----EE 231 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC------CCCEEEE-EcCCH----------HHHHHHHHHhCCe---eecH-----HH
Confidence 577899999999999999999886 3444444 44432 3468899999965 3221 23
Q ss_pred HHHHHHhcCCcEEEEe--cCCCcCChhhhc
Q 048078 128 FLSNLRALQPELCITA--AYGNILPSKFLN 155 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~--~~~~ilp~~il~ 155 (378)
+.+.| ..+|++|++ +-..||+.+.+.
T Consensus 232 l~~~l--~~~DvVissTsa~~~ii~~~~ve 259 (414)
T COG0373 232 LLEAL--AEADVVISSTSAPHPIITREMVE 259 (414)
T ss_pred HHHhh--hhCCEEEEecCCCccccCHHHHH
Confidence 44444 468999988 455666655543
No 143
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=51.50 E-value=25 Score=36.72 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=44.0
Q ss_pred EEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCCh
Q 048078 82 AAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPS 151 (378)
Q Consensus 82 ~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~ 151 (378)
+.||.+|..-+|++.+.....+..+.+++|+.++++.....-...++.+.+...++|.+|++|=--.|.+
T Consensus 114 ~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGTlnE 183 (481)
T PLN02958 114 LLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGILVE 183 (481)
T ss_pred EEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCHHHH
Confidence 4577787665555545444567778889999976433322222344555555567899999996565544
No 144
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=51.13 E-value=63 Score=30.59 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.5
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
+|||+++|. +.++...++.+.+. .++++++++-..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~ 36 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRP 36 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecC
Confidence 589999997 98888888777653 368999987543
No 145
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=50.88 E-value=53 Score=33.46 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=62.3
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHH
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~ 130 (378)
|++++|.........+.|.+. +.+++.++|.-..... ..+..++....++. +.... +-++..+
T Consensus 282 kv~v~g~~~~~~~la~~L~el------Gmevv~~~t~~~~~~~------~~~~~~~l~~~~~~---v~~~~--~~~~~~~ 344 (416)
T cd01980 282 RVLVSGYEGNELLVARLLIES------GAEVPYVSTSIPKTSL------SAPDYEWLSALGVE---VRYRK--SLEDDIA 344 (416)
T ss_pred eEEEECCCchhHHHHHHHHHc------CCEEEEEecCCCChhh------hHHHHHHHHhcCCc---cccCC--CHHHHHH
Confidence 787788776667766777663 7999999986321100 12344444444544 32212 2223356
Q ss_pred HHHhcCCcEEEEecCCCcCChhhhcCCCCceEEE-ccCCCCCCCCchHHH
Q 048078 131 NLRALQPELCITAAYGNILPSKFLNIPPMGTVNI-HPSLLPLYRGAAPVQ 179 (378)
Q Consensus 131 ~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNi-HpSlLP~yRG~~pi~ 179 (378)
.+++.+||++|..+.++.+..++ ..|-..+.+. |.-.+--|||.--+.
T Consensus 345 ~~~~~~pDl~Ig~s~~~~~a~~~-giP~~r~~~~~~~~~~~GY~G~~~~~ 393 (416)
T cd01980 345 AVEEYRPDLAIGTTPLVQYAKEK-GIPALYYTNLISARPLFGAAGAGSLL 393 (416)
T ss_pred HHhhcCCCEEEeCChhhHHHHHh-CCCEEEecChhhhhhccchhhHHHHH
Confidence 67888999999877665553332 2222222332 222555788875544
No 146
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.88 E-value=42 Score=31.15 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=37.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPA 114 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~ 114 (378)
.|.||+++||++++-..+-.+++... .+|....|--.+.. .-...|.++|+++
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g~----~le~~~mvgidp~s----------dglaraarlgv~t 55 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHGQ----HLEMAVMVGIDPQS----------DGLARAARLGVAT 55 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcCC----cccceeEEccCCCc----------cHHHHHHhcCCcc
Confidence 48899999999999999988888742 35555444322222 2357788999994
No 147
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=50.78 E-value=48 Score=31.62 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.9
Q ss_pred CceEEEEecCcchHHHHHHHHHc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
.|||+|+|.+.++....+.|+++
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~ 25 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA 25 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC
Confidence 47999999999999999999875
No 148
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=50.56 E-value=43 Score=34.34 Aligned_cols=24 Identities=21% Similarity=0.175 Sum_probs=18.8
Q ss_pred CCceEEEEecCcchHHHHHHHHHc
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
+.|||+++|++.--.+...+|.+.
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~ 26 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKS 26 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhC
Confidence 359999999997666777777664
No 149
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=50.38 E-value=1e+02 Score=29.67 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=21.2
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
|||++.|. +.++..+.+.|++. +++|+++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~------g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN------GHDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC------CCeEEEE
Confidence 68999994 55666677888874 5777664
No 150
>PLN02712 arogenate dehydrogenase
Probab=49.97 E-value=57 Score=35.57 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=27.5
Q ss_pred CCCCCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEE
Q 048078 42 SAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVA 82 (378)
Q Consensus 42 ~~~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~ 82 (378)
......+++||+|+|.|.++....+.|.+. +++|.
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~------G~~V~ 396 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQ------GHTVL 396 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHC------cCEEE
Confidence 344456789999999999999988888764 46765
No 151
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=49.78 E-value=39 Score=30.07 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=36.4
Q ss_pred HHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCc
Q 048078 62 VNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPE 138 (378)
Q Consensus 62 ~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~D 138 (378)
+--++.|++. +++ ++|+|.++++ .|+..|++.||++ +++-.......+.+.+++.+.+
T Consensus 41 G~Gik~l~~~------Gi~-vAIITGr~s~----------ive~Ra~~LGI~~--~~qG~~dK~~a~~~L~~~~~l~ 98 (170)
T COG1778 41 GHGIKLLLKS------GIK-VAIITGRDSP----------IVEKRAKDLGIKH--LYQGISDKLAAFEELLKKLNLD 98 (170)
T ss_pred cHHHHHHHHc------CCe-EEEEeCCCCH----------HHHHHHHHcCCce--eeechHhHHHHHHHHHHHhCCC
Confidence 4445667664 566 4789988764 6899999999994 3443332334444555555443
No 152
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=49.67 E-value=16 Score=36.67 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=52.5
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC-CCCCCCC----CccCChHHHHHHHHCCCCCceecCCC---
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP-PSRRDRG----RKVLPSPVAQYALDRGFPADLIFTPE--- 121 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~-~~~~grg----~~~~~~~v~~~A~~~gIp~~~v~~~~--- 121 (378)
|||++.-|+-.-..+--.|++. .+++|++|.-.- +.....+ .......++..|+++|||++++.-.+
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~-----~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~ 75 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKE-----QGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFW 75 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHH-----CT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHHh-----hcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHH
Confidence 6899888887666666677765 379999997532 1110000 00012357889999999976431100
Q ss_pred -------------------------CCCcHHHHHHHHh-cCCcEEEEecCCCcCChh
Q 048078 122 -------------------------RAGEDAFLSNLRA-LQPELCITAAYGNILPSK 152 (378)
Q Consensus 122 -------------------------~~~~~~~~~~l~~-~~~Dliv~~~~~~ilp~~ 152 (378)
.+.=..+++...+ .++|.+.+-.|-++...+
T Consensus 76 ~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~ 132 (356)
T PF03054_consen 76 EEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDE 132 (356)
T ss_dssp HHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES
T ss_pred HHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeec
Confidence 1222346677777 899999888887777654
No 153
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=49.57 E-value=56 Score=33.85 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=30.6
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
.||+++|.++.+..+++++.+. ++++++|.++++.
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~------Gi~~v~v~~~~d~ 37 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEM------GIRSVAIYSEADR 37 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCCCcc
Confidence 4999999999999999999874 7899988888765
No 154
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=49.38 E-value=87 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=20.3
Q ss_pred CceEEEEecCcchHHHHHHHHHc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
.|||+|+|.+.++......|.+.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~ 24 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS 24 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC
Confidence 57999999999999898988875
No 155
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=49.14 E-value=62 Score=30.85 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=28.3
Q ss_pred ceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
|||+++| ++.++...++.+.+. .++++++++..+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecC
Confidence 7999999 799999999988764 379999988633
No 156
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=48.92 E-value=56 Score=32.01 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=21.6
Q ss_pred CCcCChhhhcCCCCceEEEccCCCCCCCC
Q 048078 146 GNILPSKFLNIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 146 ~~ilp~~il~~~~~g~iNiHpSlLP~yRG 174 (378)
.+.+.+++++..+..++-+|| ||.+||
T Consensus 241 ~y~v~~~ll~~a~~~~~~mHc--LPa~Rg 267 (305)
T PRK00856 241 SYGLTAERLALAKPDAIVMHP--GPVNRG 267 (305)
T ss_pred cCccCHHHHhhcCCCCEEECC--CCCCCC
Confidence 456888888887778999998 677776
No 157
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=48.82 E-value=1.2e+02 Score=30.59 Aligned_cols=188 Identities=16% Similarity=0.136 Sum_probs=100.7
Q ss_pred CCCCceEEEEecCc---chHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC---
Q 048078 46 VSRKKPLVFLGSPQ---VSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT--- 119 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~---~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~--- 119 (378)
+.+.|-++|+-... |+..++...-...++ .+..=+++||++.-.+ -.....+.+..++.||+++++..
T Consensus 36 q~k~~~~af~m~~s~~rfG~gv~~Evg~dikn--~gaKk~llvTDkni~~----~~~~~~a~~~L~~~~I~~~vyD~v~~ 109 (465)
T KOG3857|consen 36 QIKMMSVAFFMIPSTSRFGKGVLAEVGDDIKN--LGAKKTLLVTDKNIAK----LGLVKVAQDSLEENGINVEVYDKVQP 109 (465)
T ss_pred ccccceeeEEeccchhhhcchhHHHHHHHHHh--cCccceEEeeCCChhh----cccHHHHHHHHHHcCCceEEecCccC
Confidence 44677888876544 556666655333222 3677788999875321 11223466778899999874322
Q ss_pred -CCCCCcHHHHHHHHhcCCcEEEEecCCCcCC-------------hhhhcCC--CCceEE-EccCCCCCCCCchHHHHHH
Q 048078 120 -PERAGEDAFLSNLRALQPELCITAAYGNILP-------------SKFLNIP--PMGTVN-IHPSLLPLYRGAAPVQRAL 182 (378)
Q Consensus 120 -~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp-------------~~il~~~--~~g~iN-iHpSlLP~yRG~~pi~wai 182 (378)
|..-+-.+-++..++.++|..|.+|=|.-.. .+|++.- +.|-.+ .---+||-.. +.-.-
T Consensus 110 ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiA----ipTTa 185 (465)
T KOG3857|consen 110 EPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIA----IPTTA 185 (465)
T ss_pred CCchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhhcCCCccchhccCCcccccccccccccceEe----cccCC
Confidence 2222334556778899999999999776542 1222210 000000 0001222211 11111
Q ss_pred HcCCcEEEEEEEEe-cCCCCCCCeeEEEEEEeCCCC--CHHHHHHH-HHHHHHHHHHHHHHHhHc
Q 048078 183 QGGAKETGVSLAFT-VRALDAGPVIAREKMEVDDQI--KAPELLVL-LFSEGSELLIRELPSILD 243 (378)
Q Consensus 183 ~~g~~~tGvTih~~-~~~~D~G~Ii~Q~~~~I~~~d--t~~~L~~k-l~~~~~~ll~~~l~~l~~ 243 (378)
=.|...||++|+-. ..++-.|=|.--.+-.+.-.| +.-.+-.+ ....|.+.|..+|+...+
T Consensus 186 GTgSEtT~~AI~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~~v~a~tGfDvlcHalEsyts 250 (465)
T KOG3857|consen 186 GTGSETTRFAIIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPPRVTAATGFDVLCHALESYTS 250 (465)
T ss_pred CccccceeeEEecchhhheeeeeecccccceeeecChHHhccCChHHhhhcchHHHHHHHHHHhc
Confidence 24667799999844 445555533322222222222 22333334 456788999999998764
No 158
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=48.78 E-value=36 Score=35.97 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=48.8
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
+=+|+++|.+.++....+.|.+. +++++.|=.+++ ..+.+++.|.+ +.. .+..+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d~~-------------~~~~~~~~g~~---~i~-GD~~~~~~ 473 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA------GIPLVVIETSRT-------------RVDELRERGIR---AVL-GNAANEEI 473 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC------CCCEEEEECCHH-------------HHHHHHHCCCe---EEE-cCCCCHHH
Confidence 46899999999999999998775 566644422222 24556678888 443 34456777
Q ss_pred HHHHHhcCCcEEEEe
Q 048078 129 LSNLRALQPELCITA 143 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~ 143 (378)
++...-.++|.++++
T Consensus 474 L~~a~i~~a~~viv~ 488 (558)
T PRK10669 474 MQLAHLDCARWLLLT 488 (558)
T ss_pred HHhcCccccCEEEEE
Confidence 766666678876654
No 159
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.59 E-value=36 Score=30.60 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=14.9
Q ss_pred cHHHHHHHHhcCCcEEEEecCC
Q 048078 125 EDAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~ 146 (378)
++++++.|++.+||++++ +.|
T Consensus 89 ~~~i~~~I~~s~~dil~V-glG 109 (177)
T TIGR00696 89 RKAALAKIARSGAGIVFV-GLG 109 (177)
T ss_pred HHHHHHHHHHcCCCEEEE-EcC
Confidence 355778888889997765 444
No 160
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=48.35 E-value=44 Score=33.12 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=25.2
Q ss_pred CceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcC
Q 048078 49 KKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 49 ~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
++||+++| |+..+...++.|.+. ..+++++|+..
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~ 36 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSR 36 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECc
Confidence 58999999 476666777777653 36888888763
No 161
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=47.98 E-value=55 Score=32.41 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=25.0
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
||+++|++..+....+++.+. +++++.+-.+++
T Consensus 1 kililG~g~~~~~l~~aa~~~------G~~v~~~d~~~~ 33 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL------GVEVIAVDRYAN 33 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCC
Confidence 799999998888888877653 688776655544
No 162
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=46.98 E-value=79 Score=30.71 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHhcCCcEEEEecCC
Q 048078 129 LSNLRALQPELCITAAYG 146 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~ 146 (378)
.+.+++.+||++++.++.
T Consensus 84 ~~~ik~~~pDvv~~~~~~ 101 (357)
T PRK00726 84 RKILKRFKPDVVVGFGGY 101 (357)
T ss_pred HHHHHhcCCCEEEECCCc
Confidence 356778899999999853
No 163
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=46.40 E-value=62 Score=31.98 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=43.8
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC-CC--CCCCC--CccCChHHHHHHHHCCCCCcee
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP-PS--RRDRG--RKVLPSPVAQYALDRGFPADLI 117 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~-~~--~~grg--~~~~~~~v~~~A~~~gIp~~~v 117 (378)
.++.||++.-|+.....+-..|++.. ++++.+|+... +. ..|.+ ..-....+...|++.|||++.|
T Consensus 3 ~~~~~VvvamSgGVDSsVaa~Ll~~~-----g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~V 73 (377)
T KOG2805|consen 3 EKPDRVVVAMSGGVDSSVAARLLAAR-----GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQV 73 (377)
T ss_pred cccceEEEEecCCchHHHHHHHHHhc-----CCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEE
Confidence 34668888888877777777788763 78999998642 11 11111 1113457888999999997654
No 164
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=46.16 E-value=65 Score=27.46 Aligned_cols=87 Identities=14% Similarity=0.198 Sum_probs=42.2
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCC---CCc--cCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDR---GRK--VLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~gr---g~~--~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
+...+|.+.-+....+.|.+.. ..++++++++..++...+. +.. -....+.+++++++|....+ ..+....
T Consensus 79 ~~~~v~~~~~~~~~~~~l~~~~---~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~i-al~~~~~ 154 (175)
T PF13727_consen 79 NVLIVGAGGAGRELAEALRSNP---RLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVII-ALPWSEE 154 (175)
T ss_dssp EEEEE--SHHHHHHHHHHHH-----SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE---TTS-H
T ss_pred ceEEEEEechHHHHHHHHHhhh---hcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEE-EcCccCH
Confidence 3345555555667777776543 3578999999876543332 111 13467888888888885422 2222222
Q ss_pred H---HHHHHHHhcCCcEEE
Q 048078 126 D---AFLSNLRALQPELCI 141 (378)
Q Consensus 126 ~---~~~~~l~~~~~Dliv 141 (378)
+ ++++.+++...++-+
T Consensus 155 ~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 155 EQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 2 344555666666654
No 165
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=45.94 E-value=64 Score=25.99 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCC
Q 048078 102 PVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 102 ~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 147 (378)
...+.+++.++++..+ ...+. .+.+.+..++.++|++|+.+.++
T Consensus 53 ~~~~~~~~~~~~~~~~-~~~~~-~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 53 EALRLAEELGAEVVTL-PGDDV-AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHcCCEEEEE-eCCcH-HHHHHHHHHHcCCCEEEeCCCCC
Confidence 3556788888875422 22222 35677888899999999877654
No 166
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=45.87 E-value=62 Score=26.04 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCC
Q 048078 102 PVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 102 ~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 146 (378)
.+.+.+.+.|++++.+......-.+++.+..++.++|++|+..-+
T Consensus 60 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~ 104 (132)
T cd01988 60 QAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHG 104 (132)
T ss_pred HHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCC
Confidence 455667788999654332211123567788889999999987654
No 167
>PRK12742 oxidoreductase; Provisional
Probab=45.87 E-value=1.2e+02 Score=27.24 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=42.7
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
..+|++.|. +.++..+.+.|++. +++++.+..... ..+.+++.+.++. .+..+-.+.++
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~------G~~v~~~~~~~~-----------~~~~~l~~~~~~~---~~~~D~~~~~~ 65 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTD------GANVRFTYAGSK-----------DAAERLAQETGAT---AVQTDSADRDA 65 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEecCCCH-----------HHHHHHHHHhCCe---EEecCCCCHHH
Confidence 357888884 56777777888764 566654332211 1345566666654 33333223344
Q ss_pred HHHHHHhc-CCcEEEEec
Q 048078 128 FLSNLRAL-QPELCITAA 144 (378)
Q Consensus 128 ~~~~l~~~-~~Dliv~~~ 144 (378)
+.+.+++. .+|++|...
T Consensus 66 ~~~~~~~~~~id~li~~a 83 (237)
T PRK12742 66 VIDVVRKSGALDILVVNA 83 (237)
T ss_pred HHHHHHHhCCCcEEEECC
Confidence 55555554 478887665
No 168
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=45.84 E-value=2.1e+02 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=19.8
Q ss_pred CcCChhhhcCC-CCceEEEccCCCCCCCCc
Q 048078 147 NILPSKFLNIP-PMGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 147 ~ilp~~il~~~-~~g~iNiHpSlLP~yRG~ 175 (378)
+.|.+++++.. +-+++-+|| ||.+||.
T Consensus 254 y~v~~~lm~~a~k~~~ivmHc--LP~~~~~ 281 (336)
T PRK03515 254 YQVNSKMMQLTGNPQVKFLHC--LPAFHDD 281 (336)
T ss_pred CccCHHHHhcccCCCCEEECC--CCCCCCc
Confidence 44666777763 567899998 6888875
No 169
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=45.83 E-value=1.1e+02 Score=30.44 Aligned_cols=81 Identities=11% Similarity=0.091 Sum_probs=49.3
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCC------
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERA------ 123 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~------ 123 (378)
|||.|=-...--+..++.++...+. .+|+|. ||.++. ..+.+++..+|+++.++-.....
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~--~GheV~--it~R~~----------~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEK--RGHEVL--ITARDK----------DETEELLDLYGIDYIVIGKHGDSLYGKLL 66 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHh--CCCEEE--EEEecc----------chHHHHHHHcCCCeEEEcCCCCCHHHHHH
Confidence 5676644443356666766654321 367764 444433 24789999999998755332211
Q ss_pred ----CcHHHHHHHHhcCCcEEEEec
Q 048078 124 ----GEDAFLSNLRALQPELCITAA 144 (378)
Q Consensus 124 ----~~~~~~~~l~~~~~Dliv~~~ 144 (378)
....+.+.+++++||++++.+
T Consensus 67 ~~~~R~~~l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 67 ESIERQYKLLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEecC
Confidence 123455677788999999755
No 170
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=45.80 E-value=76 Score=32.02 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=17.9
Q ss_pred ceEEEEecCcchHHHHHHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFN 70 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~ 70 (378)
|||+++|++..+....+++.+
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~ 21 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQ 21 (423)
T ss_pred CEEEEECCChHHHHHHHHHHh
Confidence 799999999887778788766
No 171
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=45.72 E-value=93 Score=29.69 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCC--CCcHHHHHHHHhcCCcEEEEecC
Q 048078 78 IFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPER--AGEDAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 78 ~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~--~~~~~~~~~l~~~~~Dliv~~~~ 145 (378)
++++..++...+. .+.+..++.|.++..+-.... .+..++.+.|++.+||++|+-+|
T Consensus 31 g~~v~f~~~~~~~-----------~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 31 GAEVAFACKPLPG-----------DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHY 89 (279)
T ss_pred CCEEEEEeCCCCH-----------HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCC
Confidence 6888887765432 346778899999432211111 01235788899999999999888
No 172
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=45.68 E-value=82 Score=29.18 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=89.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC-CCCCceecCC-CCCCc
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR-GFPADLIFTP-ERAGE 125 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~-gIp~~~v~~~-~~~~~ 125 (378)
+.+||++.|.+.++..+.+.|.+. +..+++|.-........| +....+.+...+. ++. .+.. +.+.+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~G--ld~~~l~~~~~~~~~~~---~~~~~~~~~~ 90 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPG--ITTEELINYAVALGGSA---RVKVQDYFPG 90 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCC--CCHHHHHHHHHhhCCcc---ccCcccccCc
Confidence 468999999999999999999875 577777753221000001 1222344444433 333 2211 12222
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCe
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPV 205 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~I 205 (378)
+++ ...++|+++-++....|..+-....+-+.| +=.+-.|- .|-.-.++... |+.+. =|--.-+|.+
T Consensus 91 ~~l----~~~~~DVlipaA~~~~i~~~~a~~l~a~~V-~e~AN~p~----t~~a~~~L~~~---Gi~v~-Pd~~~NaGGv 157 (217)
T cd05211 91 EAI----LGLDVDIFAPCALGNVIDLENAKKLKAKVV-AEGANNPT----TDEALRILHER---GIVVA-PDIVANAGGV 157 (217)
T ss_pred ccc----eeccccEEeeccccCccChhhHhhcCccEE-EeCCCCCC----CHHHHHHHHHC---CcEEE-ChHHhcCCCe
Confidence 333 245899999999999888777665543322 11222221 22233344322 43332 1223447888
Q ss_pred eEEEEEEeCCC-----CCHHHHHHHHHHHHHHHHHHHHHH
Q 048078 206 IAREKMEVDDQ-----IKAPELLVLLFSEGSELLIRELPS 240 (378)
Q Consensus 206 i~Q~~~~I~~~-----dt~~~L~~kl~~~~~~ll~~~l~~ 240 (378)
+. ..++...+ .|.++..+++.....+.+.++++.
T Consensus 158 i~-s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~ 196 (217)
T cd05211 158 IV-SYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAI 196 (217)
T ss_pred Ee-EHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 33333222 345667767666655555555543
No 173
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=45.62 E-value=73 Score=32.74 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=21.8
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
.|||+++|++.-......+|.+. +.+|..+..
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~------g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRS------GAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhC------CCeEEEEEC
Confidence 58999999996445555566553 466666655
No 174
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=45.25 E-value=69 Score=32.60 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=67.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC--CCCCceecCCCCCCcH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR--GFPADLIFTPERAGED 126 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~--gIp~~~v~~~~~~~~~ 126 (378)
++||+++|++..+..+...|.++. ..+|.. .+ +.. ....+.+..- ++.. .+.+-.+.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~-----d~~V~i-Ad-Rs~----------~~~~~i~~~~~~~v~~---~~vD~~d~~ 60 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNG-----DGEVTI-AD-RSK----------EKCARIAELIGGKVEA---LQVDAADVD 60 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCC-----CceEEE-Ee-CCH----------HHHHHHHhhcccccee---EEecccChH
Confidence 479999999999999999888753 255532 22 221 1233333332 3442 233334455
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcC-CCCc----eEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCC
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNI-PPMG----TVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALD 201 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~-~~~g----~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D 201 (378)
.+.+.|++. |++|.+. +..+...++++ .+.| -+..|... .|.+...-++.|+|+. .+-|+|
T Consensus 61 al~~li~~~--d~VIn~~-p~~~~~~i~ka~i~~gv~yvDts~~~~~----------~~~~~~~a~~Agit~v-~~~G~d 126 (389)
T COG1748 61 ALVALIKDF--DLVINAA-PPFVDLTILKACIKTGVDYVDTSYYEEP----------PWKLDEEAKKAGITAV-LGCGFD 126 (389)
T ss_pred HHHHHHhcC--CEEEEeC-CchhhHHHHHHHHHhCCCEEEcccCCch----------hhhhhHHHHHcCeEEE-cccCcC
Confidence 777888766 8888776 34454455532 2222 23334333 2666666667776664 233444
Q ss_pred CC
Q 048078 202 AG 203 (378)
Q Consensus 202 ~G 203 (378)
-|
T Consensus 127 PG 128 (389)
T COG1748 127 PG 128 (389)
T ss_pred cc
Confidence 33
No 175
>PRK05884 short chain dehydrogenase; Provisional
Probab=44.73 E-value=1e+02 Score=28.03 Aligned_cols=72 Identities=6% Similarity=0.063 Sum_probs=39.7
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH-H
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED-A 127 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~-~ 127 (378)
||+++.|. +.++..+.+.|.+. +++|+.+.-++ ..+.+.+++.++. ++.. ++.++ +
T Consensus 1 m~vlItGas~giG~~ia~~l~~~------g~~v~~~~r~~------------~~~~~~~~~~~~~---~~~~-D~~~~~~ 58 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND------GHKVTLVGARR------------DDLEVAAKELDVD---AIVC-DNTDPAS 58 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC------CCEEEEEeCCH------------HHHHHHHHhccCc---EEec-CCCCHHH
Confidence 57888885 55777777888764 56765542211 1345566665554 3332 33333 3
Q ss_pred HHHHHHhc--CCcEEEEe
Q 048078 128 FLSNLRAL--QPELCITA 143 (378)
Q Consensus 128 ~~~~l~~~--~~Dliv~~ 143 (378)
+.+.++.. .+|++|..
T Consensus 59 v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 59 LEEARGLFPHHLDTIVNV 76 (223)
T ss_pred HHHHHHHHhhcCcEEEEC
Confidence 33333332 57887764
No 176
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=44.67 E-value=1.6e+02 Score=30.07 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=24.8
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
..|++++|+++-+... ..++++. +..++++++++...
T Consensus 124 ~rrvLIIGag~~~~~L-~~l~~~~--~~~g~~vVGfi~~d 160 (442)
T TIGR03013 124 KRRILVLGTGPRAREI-ARLRRSS--DRRGHEIVGFVPLP 160 (442)
T ss_pred CCcEEEEECCHHHHHH-HHHHHhC--ccCCeEEEEEEcCC
Confidence 4579999999844444 6665431 22468999999543
No 177
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=44.67 E-value=69 Score=31.22 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=44.8
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
..+||+++|.|..+..+++.|... +...+.|+ +++. ....++|+++|.. +... ++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~-~r~~----------~ra~~la~~~g~~---~~~~-----~~ 231 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK------GVAEITIA-NRTY----------ERAEELAKELGGN---AVPL-----DE 231 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc------CCCEEEEE-eCCH----------HHHHHHHHHcCCe---EEeH-----HH
Confidence 468999999999998888888763 23333444 3321 1356788888864 2211 23
Q ss_pred HHHHHHhcCCcEEEEecC
Q 048078 128 FLSNLRALQPELCITAAY 145 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~ 145 (378)
+.+.+. ++|++|++.-
T Consensus 232 ~~~~l~--~aDvVi~at~ 247 (311)
T cd05213 232 LLELLN--EADVVISATG 247 (311)
T ss_pred HHHHHh--cCCEEEECCC
Confidence 334443 4799988764
No 178
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=44.59 E-value=67 Score=30.11 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=20.0
Q ss_pred ceEEEEecCcchHHHHHHHHHc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
|||+|+|.+..+....+.|++.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~ 22 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS 22 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC
Confidence 5899999999999999999875
No 179
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=43.97 E-value=37 Score=34.82 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC-----------CCCCCCchHHHHHHHcCCcEEEEEEEE
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL-----------LPLYRGAAPVQRALQGGAKETGVSLAF 195 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl-----------LP~yRG~~pi~wai~~g~~~tGvTih~ 195 (378)
.+-++|++.+||++|+++--+.-. =+++..+-=+|.+-.+. ||..+|...+-|.|.+.....|+.+..
T Consensus 39 ~~r~~l~~~~PDvvVv~~nDH~~~-Ff~d~~P~F~IG~~~~~~~~D~~g~P~~ly~~~G~peLA~~I~~~L~~~gfD~a~ 117 (420)
T PRK13367 39 PLRRWLEEKKPDVLLYIFNDHVTS-FFFDHYSAFALGIDEQYAVADEGGGPRDLPPVRGHAALSRHIGASLMADEFDMSF 117 (420)
T ss_pred HHHHHHHHhCCCEEEEEccchhhh-cCcccCCCeEEEecccccccccCCCccccCCCCCCHHHHHHHHHHHHhcCCCeec
Confidence 456888999999999988544431 12332222245544332 456788888888888777677776665
Q ss_pred e-cCCCCCCCee
Q 048078 196 T-VRALDAGPVI 206 (378)
Q Consensus 196 ~-~~~~D~G~Ii 206 (378)
. +-++|.|-.+
T Consensus 118 ~~~~~lDHG~~V 129 (420)
T PRK13367 118 FQDKPLDHGLFS 129 (420)
T ss_pred ccCCCCCcchhh
Confidence 4 3458877543
No 180
>PLN02735 carbamoyl-phosphate synthase
Probab=43.78 E-value=55 Score=37.87 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=29.9
Q ss_pred CCCCceEEEEecCcchH-----------HHHHHHHHccCCCCCCceEEEEEcCCCCC
Q 048078 46 VSRKKPLVFLGSPQVSV-----------NVLDALFNASSSPDSIFEVAAIVTQPPSR 91 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~-----------~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~ 91 (378)
...+.||+++|++.... .++++|.+. +++++.|-++|+..
T Consensus 571 ~~~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~------G~~tI~v~~npetv 621 (1102)
T PLN02735 571 PTNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDA------GYETIMMNSNPETV 621 (1102)
T ss_pred cCCCceEEEeCccccccCcccccceeHHHHHHHHHHc------CCeEEEEeCCCccc
Confidence 45688999999996422 266777664 79999998888764
No 181
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=43.72 E-value=1.6e+02 Score=29.37 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=51.6
Q ss_pred CCceEEEEecCc--chHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 48 RKKPLVFLGSPQ--VSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 48 ~~~rIvf~Gs~~--~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
..+||+|+|... -.+..+-.++... .+.++. ++.|+.- . .+..+.+.+++.|..+. + .++
T Consensus 158 ~g~kia~vGD~~~~rv~~Sl~~~l~~~----~g~~v~--~~~P~~~-----~-~~~~~~~~~~~~g~~~~-~--~~d--- 219 (338)
T PRK08192 158 DGMHIAMVGDLKFGRTVHSLSRLLCMY----KNVSFT--LVSPKEL-----A-MPDYVISDIENAGHKIT-I--TDQ--- 219 (338)
T ss_pred CCCEEEEECcCCCCchHHHHHHHHHHh----cCCEEE--EECCccc-----c-CCHHHHHHHHHcCCeEE-E--EcC---
Confidence 358999999752 1223322222211 245543 3333321 0 13456677888776632 1 111
Q ss_pred HHHHHHHHhcCCcEEEEec-----C----------C-CcCChhhh-cCCCCceEEEccCCCCCCCC
Q 048078 126 DAFLSNLRALQPELCITAA-----Y----------G-NILPSKFL-NIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~-----~----------~-~ilp~~il-~~~~~g~iNiHpSlLP~yRG 174 (378)
+.+.+ .++|++.+-. | + +.+.++++ +..+-.++-+|| ||.+||
T Consensus 220 --~~ea~--~~aDvvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc--LP~~~~ 279 (338)
T PRK08192 220 --LEGNL--DKADILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP--LPRDSR 279 (338)
T ss_pred --HHHHH--ccCCEEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC--CCCCCC
Confidence 11223 3567666631 1 1 45566676 335556788887 466655
No 182
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=43.39 E-value=73 Score=33.34 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=21.4
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
|||+++|++.--.....+|.+.. ...++.++..
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~----~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKST----KGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCC----CCCEEEEEEC
Confidence 79999999965555555665531 2466666644
No 183
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=43.38 E-value=51 Score=35.56 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=49.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..+|+++|.+.++..+.+.|.+. +++++.|=.+++ -.+.+++.|.+ ++. .+..+.++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~~-------------~v~~~~~~g~~---v~~-GDat~~~~ 456 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS------GVKMTVLDHDPD-------------HIETLRKFGMK---VFY-GDATRMDL 456 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC------CCCEEEEECCHH-------------HHHHHHhcCCe---EEE-EeCCCHHH
Confidence 57999999999999888888764 466544422222 24455678988 543 34556777
Q ss_pred HHHHHhcCCcEEEEec
Q 048078 129 LSNLRALQPELCITAA 144 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~ 144 (378)
++...-.++|++|++.
T Consensus 457 L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 457 LESAGAAKAEVLINAI 472 (621)
T ss_pred HHhcCCCcCCEEEEEe
Confidence 7666666788887764
No 184
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=43.30 E-value=76 Score=30.25 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=23.8
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
|||+|+|.+.++......|.+. +++|.++-
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d 30 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVS 30 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEE
Confidence 5899999999999888888775 56765553
No 185
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=43.23 E-value=1.9e+02 Score=27.99 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=59.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..+|+++|.+..+..+.+.|... +.+|. |+ ++... . .+.+.+.|.. ... -+++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~------G~~V~-v~-~R~~~----------~-~~~~~~~g~~---~~~-----~~~l 203 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL------GARVF-VG-ARSSA----------D-LARITEMGLI---PFP-----LNKL 203 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC------CCEEE-EE-eCCHH----------H-HHHHHHCCCe---eec-----HHHH
Confidence 46999999999888888888764 45543 33 33211 1 2334455544 211 1223
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcC
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGG 185 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g 185 (378)
.+.+ .+.|+++...-..+++.+.++..+.+.+=+--+--| |..+..+|=..|
T Consensus 204 ~~~l--~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P---g~tdf~~Ak~~G 255 (287)
T TIGR02853 204 EEKV--AEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP---GGTDFEYAKKRG 255 (287)
T ss_pred HHHh--ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC---CCCCHHHHHHCC
Confidence 3333 378999987655567777777665554333333333 444555554444
No 186
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=43.00 E-value=35 Score=34.93 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=28.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
..||+++|.++.+..+++++.+. +++++++-+.++
T Consensus 2 ~kkili~g~g~~~~~~~~aa~~l------G~~vv~~~~~~d 36 (449)
T TIGR00514 2 LDKILIANRGEIALRILRACKEL------GIKTVAVHSTAD 36 (449)
T ss_pred cceEEEeCCCHHHHHHHHHHHHc------CCeEEEEEChhh
Confidence 34999999999999999998774 788888766543
No 187
>PLN02477 glutamate dehydrogenase
Probab=42.95 E-value=76 Score=32.51 Aligned_cols=170 Identities=11% Similarity=0.002 Sum_probs=95.9
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
+.+||++-|.++.+..+.+.|.+. +..|++|. +.+...-...-+....+.++.++.+-- ........+..++
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~------GakVVaVs-D~~G~iy~~~GLD~~~L~~~k~~~g~l-~~~~~a~~i~~~e 276 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEK------GGKIVAVS-DITGAVKNENGLDIPALRKHVAEGGGL-KGFPGGDPIDPDD 276 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHc------CCEEEEEE-CCCCeEECCCCCCHHHHHHHHHhcCch-hccccceEecCcc
Confidence 458999999999999998888775 67888773 322100000112233444544444311 0011111123333
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEe-cCCCCCCCee
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFT-VRALDAGPVI 206 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~-~~~~D~G~Ii 206 (378)
++ ..++|+++=++.+..|..+-....+-+ +-+=.+-.|- .|=.-.++... |+ .++ |--.-+|-++
T Consensus 277 ~l----~~~~DvliP~Al~~~I~~~na~~i~ak-~I~egAN~p~----t~ea~~~L~~r---GI--~~~PD~~aNaGGVi 342 (410)
T PLN02477 277 IL----VEPCDVLIPAALGGVINKENAADVKAK-FIVEAANHPT----DPEADEILRKK---GV--VVLPDIYANSGGVT 342 (410)
T ss_pred ce----eccccEEeeccccccCCHhHHHHcCCc-EEEeCCCCCC----CHHHHHHHHHC---Cc--EEEChHHhCCCCee
Confidence 33 358999999999999999988876654 3344555554 22233444322 43 333 3335678877
Q ss_pred EEEEEEeC-----CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 048078 207 AREKMEVD-----DQIKAPELLVLLFSEGSELLIRELPS 240 (378)
Q Consensus 207 ~Q~~~~I~-----~~dt~~~L~~kl~~~~~~ll~~~l~~ 240 (378)
.. .++.. ...+.++..+++.+.-.+.+.++++.
T Consensus 343 vs-~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~ 380 (410)
T PLN02477 343 VS-YFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEM 380 (410)
T ss_pred ee-HHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 23322 22467777778776666666665554
No 188
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=42.89 E-value=81 Score=28.22 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=41.7
Q ss_pred EEEEecCc-chHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHH
Q 048078 52 LVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 52 Ivf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~ 130 (378)
|+++|... .+..+.+.|++. +++++.+. ..+.. ......+.++. +...+-.+.+.+.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~------g~~v~~~~-~~~~~-----------~~~~~~~~~~~---~~~~dl~~~~~~~~ 59 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK------GHEVIVLS-RSSNS-----------ESFEEKKLNVE---FVIGDLTDKEQLEK 59 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TTEEEEEE-SCSTG-----------GHHHHHHTTEE---EEESETTSHHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHc------CCcccccc-ccccc-----------cccccccceEE---EEEeeccccccccc
Confidence 67888544 455556777775 57766444 33321 11222223555 33323233456667
Q ss_pred HHHhcCCcEEEEecCC
Q 048078 131 NLRALQPELCITAAYG 146 (378)
Q Consensus 131 ~l~~~~~Dliv~~~~~ 146 (378)
.++..++|.++-++..
T Consensus 60 ~~~~~~~d~vi~~a~~ 75 (236)
T PF01370_consen 60 LLEKANIDVVIHLAAF 75 (236)
T ss_dssp HHHHHTESEEEEEBSS
T ss_pred cccccCceEEEEeecc
Confidence 7788889998887753
No 189
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=42.85 E-value=49 Score=34.74 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=66.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|++++|.+..+...-+.|.+. .+++++++.|..... ...+++.+...+-. .+.. + +-.++
T Consensus 295 Gkrv~I~gd~~~a~~l~~~L~~E-----lG~~vv~~gt~~~~~--------~~~~~~~~~~~~~~--~~i~-d--D~~ei 356 (511)
T TIGR01278 295 GKRAFVFGDATHAVGMTKILARE-----LGIHIVGAGTYCKYD--------ADWVREQVAGYVDE--VLIT-D--DFQEV 356 (511)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHh-----CCCEEEecCCchhhh--------HHHHHHHHHhcCCC--eEEe-C--CHHHH
Confidence 46999999887777777777633 478887766533210 11233333333322 1221 1 22577
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCC------CCceEEEcc--CCCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIP------PMGTVNIHP--SLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~------~~g~iNiHp--SlLP~yRG~~pi~wai~~ 184 (378)
.+.+++.+||+++--.+.+.+.++ +..| |...-|++- ..+=-|+|+.-+...+.|
T Consensus 357 ~~~i~~~~pdliiG~~~er~~a~~-lgip~~~i~~Pv~~~~~~~~~~p~~Gy~Ga~~l~~~i~n 419 (511)
T TIGR01278 357 ADAIAALEPELVLGTQMERHSAKR-LDIPCGVISAPTHIQNFPLGYRPFLGFEGANVMADTVYN 419 (511)
T ss_pred HHHHHhcCCCEEEEChHHHHHHHH-cCCCEEEecCcchhhcccccCCCccchHHHHHHHHHHHH
Confidence 788999999999987766655433 2222 111113333 344468887666555544
No 190
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=42.81 E-value=49 Score=32.26 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=34.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDR 94 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~gr 94 (378)
.|+++..|++..+...++.|++. ..+++++++...+...|+
T Consensus 2 ~~~vvqyGtG~vGv~air~l~ak-----pe~elvgawv~s~ak~Gk 42 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAK-----PELELVGAWVHSAAKSGK 42 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcC-----CCCceEEEEecCcccccc
Confidence 47999999999999999999986 369999988777766664
No 191
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=42.57 E-value=1.5e+02 Score=30.22 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=65.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|++++|.+......-+.|.+. .+.+++.+.|...... .-+.....+ ++...+.. + +..++
T Consensus 301 gkrv~i~g~~~~~~~l~~~L~~e-----lG~~vv~~~~~~~~~~--------~~~~~~~~~--~~~~~~i~-~--D~~e~ 362 (430)
T cd01981 301 GKRAFVFGDATHVAAATRILARE-----MGFRVVGAGTYCKEDA--------KWFREQATG--YCDEALIT-D--DHTEV 362 (430)
T ss_pred CCeEEEEcChHHHHHHHHHHHHH-----cCCEEEeccCCCccHH--------HHHHHHHHh--cCCceEEe-c--CHHHH
Confidence 56899998776667776777743 3788888776443210 111222222 22111221 1 23667
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEE--------cc---CCCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNI--------HP---SLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNi--------Hp---SlLP~yRG~~pi~wai~~ 184 (378)
.+.+++..||+++.-.+.+-+..+ +..+ ++.+ |+ ..+=-|+|..-+...+.|
T Consensus 363 ~~~i~~~~pdliig~~~~~~~a~~-~gip---~~~~~~pi~~~~~~~~~~p~~Gy~G~~~l~~~i~~ 425 (430)
T cd01981 363 GDMIARTEPELIFGTQMERHIGKR-LDIP---CAVISAPVHIQNFPLGYRPFLGYEGTNVIADTVYN 425 (430)
T ss_pred HHHHHhhCCCEEEecchhhHHHHH-cCCC---EEEEeCCceeeccccCCCceeeechHHHHHHHHHH
Confidence 788999999999988776655322 2222 2222 22 234457888777777766
No 192
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=42.51 E-value=76 Score=30.35 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=12.6
Q ss_pred cHHHHHHHHhcCCcEEEEecC
Q 048078 125 EDAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~ 145 (378)
.+++.+.+++.+||++|-++-
T Consensus 40 ~~~~~~~~~~~~pd~Vin~aa 60 (286)
T PF04321_consen 40 PEAVAKLLEAFKPDVVINCAA 60 (286)
T ss_dssp HHHHHHHHHHH--SEEEE---
T ss_pred HHHHHHHHHHhCCCeEeccce
Confidence 356678888899999988763
No 193
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=42.42 E-value=97 Score=29.71 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=13.8
Q ss_pred HHHHHHhcCCcEEEEecC
Q 048078 128 FLSNLRALQPELCITAAY 145 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~ 145 (378)
+.+.+++.+||++++.+.
T Consensus 82 l~~~i~~~~pDvVi~~~~ 99 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGG 99 (348)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 345678889999998754
No 194
>PLN02527 aspartate carbamoyltransferase
Probab=42.22 E-value=1.9e+02 Score=28.36 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=54.3
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
-..+||+|+|-..-+ .+...++..... -.++++. ++.|+.- ..+..+.+.+++.|..+. +. ++
T Consensus 149 l~g~kva~vGD~~~~-rv~~Sl~~~~~~-~~g~~v~--~~~P~~~------~~~~~~~~~~~~~g~~~~-~~--~d---- 211 (306)
T PLN02527 149 LDGIKVGLVGDLANG-RTVRSLAYLLAK-YEDVKIY--FVAPDVV------KMKDDIKDYLTSKGVEWE-ES--SD---- 211 (306)
T ss_pred cCCCEEEEECCCCCC-hhHHHHHHHHHh-cCCCEEE--EECCCcc------CCCHHHHHHHHHcCCEEE-EE--cC----
Confidence 346899999975221 223333222100 0135543 3333321 113456777888887733 11 11
Q ss_pred HHHHHHHhcCCcEEEEecC-----------------CCcCChhhhcCCCCceEEEccCCCCCCCC
Q 048078 127 AFLSNLRALQPELCITAAY-----------------GNILPSKFLNIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~il~~~~~g~iNiHpSlLP~yRG 174 (378)
+.+.+ .++|++.+..+ .+.|.+++++..+.+++-+||.+ ||
T Consensus 212 -~~~a~--~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclP----Rg 269 (306)
T PLN02527 212 -LMEVA--SKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP----RL 269 (306)
T ss_pred -HHHHh--CCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCC----Cc
Confidence 12233 25666666331 25566778877777789999865 77
No 195
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=42.13 E-value=88 Score=29.90 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=20.7
Q ss_pred CceEEEEecCcchHHHHHHHHHc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
.+||+|+|.+..+......|++.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~ 24 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINK 24 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHC
Confidence 46899999999999999999875
No 196
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=41.75 E-value=92 Score=31.26 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=55.4
Q ss_pred CCceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 48 RKKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 48 ~~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
..+||+++| .|.++...-..|.++ +++|.++ . ++.. ....+.+.+..+= .+.-|... ..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~-d-~~~~---------~~~~~~~~~aDlV--ilavP~~~-~~ 156 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRIL-E-QDDW---------DRAEDILADAGMV--IVSVPIHL-TE 156 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEe-C-CCcc---------hhHHHHHhcCCEE--EEeCcHHH-HH
Confidence 357999999 999999988888875 4664433 2 2211 1233444333332 12223332 23
Q ss_pred HHHHHHHhcCCcEEEEecCC--CcCChhhhcCCCCceEEEccCCCCCC
Q 048078 127 AFLSNLRALQPELCITAAYG--NILPSKFLNIPPMGTVNIHPSLLPLY 172 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~--~ilp~~il~~~~~g~iNiHpSlLP~y 172 (378)
++++.+....++-+|+---+ ..+-..+....+..++..||=.=|..
T Consensus 157 ~~~~~l~~l~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~~~ 204 (374)
T PRK11199 157 EVIARLPPLPEDCILVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGPDV 204 (374)
T ss_pred HHHHHHhCCCCCcEEEECCCccHHHHHHHHHhCCCCEEeeCCCCCCCC
Confidence 44455545566666554322 12233343333345888998665533
No 197
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=41.53 E-value=46 Score=33.98 Aligned_cols=35 Identities=6% Similarity=0.125 Sum_probs=29.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
..||+++|.+..+..+++++.+. +++++.+.+.++
T Consensus 2 ~k~iLi~g~g~~a~~i~~aa~~~------G~~vv~~~~~~d 36 (451)
T PRK08591 2 FDKILIANRGEIALRIIRACKEL------GIKTVAVHSTAD 36 (451)
T ss_pred cceEEEECCCHHHHHHHHHHHHc------CCeEEEEcChhh
Confidence 36999999999999999998874 788888776654
No 198
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=41.13 E-value=1e+02 Score=31.91 Aligned_cols=121 Identities=13% Similarity=0.261 Sum_probs=65.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCC-CCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRR-DRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~-grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
-+|++++|.++.....-+.|.+. +.+.+.+++..+.+. .+ .....++....+....++.. .+-.+
T Consensus 309 Gkrv~i~g~~~~~~~l~~fl~El------g~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~v~~~---~d~~e 374 (457)
T TIGR02932 309 NKKVAIFGHPDLVIGLAEFCLEV------ELEPVLLLLGDDNSKYKK-----DPRIEELKNKANFDIEVVWN---ADLWE 374 (457)
T ss_pred CCeeEEEcCHHHHHHHHHHHHHC------CCeEEEEEECCCCccccc-----hHHHHHHHhhcCCCceEEeC---CCHHH
Confidence 45888888776666666655653 566665554332211 11 12234454444555443332 22335
Q ss_pred HHHHHH-hcCCcEEEEecCCCcCChhhhcCCC-------CceEEEccCCCCCCCCchHHHHHHHc
Q 048078 128 FLSNLR-ALQPELCITAAYGNILPSKFLNIPP-------MGTVNIHPSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 128 ~~~~l~-~~~~Dliv~~~~~~ilp~~il~~~~-------~g~iNiHpSlLP~yRG~~pi~wai~~ 184 (378)
+.+.+. ..+||+++.-++.+.+-.+ +..|- +.-+..|....--|||..-+-.-|.|
T Consensus 375 l~~~l~~~~~~dllig~s~~~~~A~k-lgip~~~~g~Pv~Dr~~~~~~~~~GY~G~~~l~~~i~n 438 (457)
T TIGR02932 375 LEKRIKAKLDIDLIMGHSKGRYVAID-ANIPMVRVGFPTFDRAGLYRKPVIGYRGAMWLGEMIAN 438 (457)
T ss_pred HHHHHhhcCCCCEEEECCchHHHHHH-cCCCEEEecCCceeecccCCCCCCchHHHHHHHHHHHH
Confidence 555555 5789999998887655444 22221 11133444566789997655544433
No 199
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=41.09 E-value=1e+02 Score=25.61 Aligned_cols=42 Identities=7% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCC
Q 048078 106 YALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 106 ~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 147 (378)
.+++.|++.+.+......-.+++++..++.++|++|+...++
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~ 114 (146)
T cd01989 73 FCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD 114 (146)
T ss_pred HHhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC
Confidence 344567775433322212245688888999999999987654
No 200
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=41.05 E-value=3.3e+02 Score=27.32 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=19.8
Q ss_pred CcCChhhhcCCC-CceEEEccCCCCCC-CCc
Q 048078 147 NILPSKFLNIPP-MGTVNIHPSLLPLY-RGA 175 (378)
Q Consensus 147 ~ilp~~il~~~~-~g~iNiHpSlLP~y-RG~ 175 (378)
+.|..++++..+ ..++-+|| ||.+ ||.
T Consensus 292 y~vt~e~l~~a~~~~~i~MHc--LP~~~Rg~ 320 (357)
T TIGR03316 292 WVCTEERMALTHDGEALYMHC--LPADIRGV 320 (357)
T ss_pred CeECHHHHHhcCCCCcEEECC--CCCCccCc
Confidence 346677777766 66899998 6887 874
No 201
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=41.05 E-value=1.2e+02 Score=30.99 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=48.1
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
....+|+++|+|..+..+++.|... +++-+.|+ ++.. ....++|.++|.. +... +
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~-~r~~----------~ra~~la~~~g~~---~~~~-----~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEK------GVRKITVA-NRTL----------ERAEELAEEFGGE---AIPL-----D 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHC------CCCeEEEE-eCCH----------HHHHHHHHHcCCc---EeeH-----H
Confidence 3457999999999988888888754 44333333 3321 2356688888754 2211 2
Q ss_pred HHHHHHHhcCCcEEEEecC--CCcCChhhh
Q 048078 127 AFLSNLRALQPELCITAAY--GNILPSKFL 154 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~--~~ilp~~il 154 (378)
+..+.+ .++|++|.+.- ..++..+.+
T Consensus 235 ~~~~~l--~~aDvVI~aT~s~~~~i~~~~l 262 (423)
T PRK00045 235 ELPEAL--AEADIVISSTGAPHPIIGKGMV 262 (423)
T ss_pred HHHHHh--ccCCEEEECCCCCCcEEcHHHH
Confidence 233344 36899998752 234444444
No 202
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=40.73 E-value=31 Score=35.49 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=39.9
Q ss_pred CCCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcC----------CCCCCCC-CCccCChHHHHHHHHCCC
Q 048078 44 FSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQ----------PPSRRDR-GRKVLPSPVAQYALDRGF 112 (378)
Q Consensus 44 ~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~----------~~~~~gr-g~~~~~~~v~~~A~~~gI 112 (378)
..+.++.||+++||+.-+...|+.|-.. .++|. ||++ |..+.|- ..+....|+..++...+-
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts------~YdV~-vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~ 122 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDTS------LYDVT-VVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNG 122 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhcccc------ccceE-EeccccceEEeeccCCccccceeehhhhhhHHHHhhccCC
Confidence 4567799999999999888888888553 45554 3332 2222221 011233477778877765
Q ss_pred CCc
Q 048078 113 PAD 115 (378)
Q Consensus 113 p~~ 115 (378)
..+
T Consensus 123 ~~~ 125 (491)
T KOG2495|consen 123 EVK 125 (491)
T ss_pred Cce
Confidence 543
No 203
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=40.46 E-value=89 Score=31.67 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=52.4
Q ss_pred EEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc---HH
Q 048078 53 VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE---DA 127 (378)
Q Consensus 53 vf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~---~~ 127 (378)
++||.+ +..-|-.+++. .+.+.+.||+.+.-.. -| ....+.+..++.||.+. ++. .. +... .+
T Consensus 30 i~fG~g--~~~~l~~~~~~-----~g~~~~lvv~~~~~~~-~g---~~~~v~~~L~~~gi~~~-~~~~v~~~P~~~~v~~ 97 (395)
T PRK15454 30 TLCGPG--AVSSCGQQAQT-----RGLKHLFVMADSFLHQ-AG---MTAGLTRSLAVKGIAMT-LWPCPVGEPCITDVCA 97 (395)
T ss_pred EEECcC--HHHHHHHHHHh-----cCCCEEEEEcCcchhh-Cc---cHHHHHHHHHHcCCeEE-EECCCCCCcCHHHHHH
Confidence 457887 45666555543 1456777888653211 11 23457788888999865 331 11 1111 24
Q ss_pred HHHHHHhcCCcEEEEecCCCcCC
Q 048078 128 FLSNLRALQPELCITAAYGNILP 150 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp 150 (378)
..+..++.++|++|.+|=|..|.
T Consensus 98 ~~~~~r~~~~D~IiavGGGS~iD 120 (395)
T PRK15454 98 AVAQLRESGCDGVIAFGGGSVLD 120 (395)
T ss_pred HHHHHHhcCcCEEEEeCChHHHH
Confidence 55677899999999999876663
No 204
>COG2403 Predicted GTPase [General function prediction only]
Probab=40.40 E-value=76 Score=32.21 Aligned_cols=83 Identities=17% Similarity=0.324 Sum_probs=52.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc-CCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT-QPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt-~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
.++||+.+|.+.--..+++..++.. ...+++++.+ +-..-. .+..++.+...-..+|+| ++..++ =+
T Consensus 5 a~kRviiLgaggrdfhv~n~a~r~~----~~yevvaf~aaqiiG~~---er~yppsleg~~~p~Gvp---i~~~k~--~~ 72 (449)
T COG2403 5 ARKRVIILGAGGRDFHVFNVALRDN----PEYEVVAFTAAQIIGGT---ERIYPPSLEGVLYPLGVP---ILPEKD--YD 72 (449)
T ss_pred CceeEEEEeccCcccchhhHHhccC----CcceEEEEEEEEecCCc---cccCCCCcccccccCCcc---cccccc--HH
Confidence 4689999998876677777766642 2477776543 222111 223445566667788999 654322 24
Q ss_pred HHHHHHHhcCCcEEEE
Q 048078 127 AFLSNLRALQPELCIT 142 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~ 142 (378)
++.+.|++.+.|..|.
T Consensus 73 ~lek~ire~~VD~~Vl 88 (449)
T COG2403 73 DLEKIIREKDVDIVVL 88 (449)
T ss_pred HHHHHHHHcCCCeEEE
Confidence 5678888999997664
No 205
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=40.36 E-value=43 Score=28.27 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=53.6
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCC-CCCceecCCCCCCc
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG-FPADLIFTPERAGE 125 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~g-Ip~~~v~~~~~~~~ 125 (378)
-...|++++|.|..+..++..|.+. +++-+.|+. +.. ....+++++.+ ..+. +...++
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~n-Rt~----------~ra~~l~~~~~~~~~~-~~~~~~--- 68 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAAL------GAKEITIVN-RTP----------ERAEALAEEFGGVNIE-AIPLED--- 68 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHT------TSSEEEEEE-SSH----------HHHHHHHHHHTGCSEE-EEEGGG---
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc------CCCEEEEEE-CCH----------HHHHHHHHHcCccccc-eeeHHH---
Confidence 3468999999999999999999885 455444544 321 24677777762 2211 222111
Q ss_pred HHHHHHHHhcCCcEEEEecC--CCcCChhhhcCCC
Q 048078 126 DAFLSNLRALQPELCITAAY--GNILPSKFLNIPP 158 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~--~~ilp~~il~~~~ 158 (378)
+.+.+ .++|++|.+.- +.++.++.+....
T Consensus 69 --~~~~~--~~~DivI~aT~~~~~~i~~~~~~~~~ 99 (135)
T PF01488_consen 69 --LEEAL--QEADIVINATPSGMPIITEEMLKKAS 99 (135)
T ss_dssp --HCHHH--HTESEEEE-SSTTSTSSTHHHHTTTC
T ss_pred --HHHHH--hhCCeEEEecCCCCcccCHHHHHHHH
Confidence 22333 46899998853 3578888877654
No 206
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=40.26 E-value=1.7e+02 Score=29.40 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=51.8
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
.+.||+++|.+..+..+.+.+... +.+| .|+. ++. ..+.+++...+-. +.. ...+.++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l------Ga~V-~v~d-~~~----------~~~~~l~~~~g~~---v~~-~~~~~~~ 223 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL------GATV-TILD-INI----------DRLRQLDAEFGGR---IHT-RYSNAYE 223 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC------CCeE-EEEE-CCH----------HHHHHHHHhcCce---eEe-ccCCHHH
Confidence 466799999998888888877654 4553 3333 221 1234555566654 211 1112234
Q ss_pred HHHHHHhcCCcEEEEec------CCCcCChhhhcCCCCc
Q 048078 128 FLSNLRALQPELCITAA------YGNILPSKFLNIPPMG 160 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~------~~~ilp~~il~~~~~g 160 (378)
+.+.+. ++|++|.+. ...++.++.++..+.+
T Consensus 224 l~~~l~--~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g 260 (370)
T TIGR00518 224 IEDAVK--RADLLIGAVLIPGAKAPKLVSNSLVAQMKPG 260 (370)
T ss_pred HHHHHc--cCCEEEEccccCCCCCCcCcCHHHHhcCCCC
Confidence 445553 689999874 1345777777765544
No 207
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=40.09 E-value=1.1e+02 Score=26.96 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=47.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCC--CCC----------CccCChHHHHHHHHCCCCCce
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRR--DRG----------RKVLPSPVAQYALDRGFPADL 116 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~--grg----------~~~~~~~v~~~A~~~gIp~~~ 116 (378)
+.=|++.|-+.|.-..++.|..+.. .+..++.||-+...-. +.. ....+..+.++|+.+|++...
T Consensus 70 ~~Vv~i~GDG~f~~~g~~eL~ta~~---~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 146 (178)
T cd02008 70 KKVVAVIGDSTFFHSGILGLINAVY---NKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVV 146 (178)
T ss_pred CCEEEEecChHHhhccHHHHHHHHH---cCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEE
Confidence 4457778888764332455554322 2456666665543210 000 011235689999999999655
Q ss_pred ecCCCCCCc--HHHHHHHHhcCCcEEEE
Q 048078 117 IFTPERAGE--DAFLSNLRALQPELCIT 142 (378)
Q Consensus 117 v~~~~~~~~--~~~~~~l~~~~~Dliv~ 142 (378)
+..++++.. +.+.+.++..+|-++++
T Consensus 147 v~~~~~l~~~~~al~~a~~~~gp~lI~v 174 (178)
T cd02008 147 VVDPYDLKAIREELKEALAVPGVSVIIA 174 (178)
T ss_pred ecCccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 544444321 22333344455666655
No 208
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=40.05 E-value=2.2e+02 Score=27.82 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=55.5
Q ss_pred ceEEE-EecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCC--CC--
Q 048078 50 KPLVF-LGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPER--AG-- 124 (378)
Q Consensus 50 ~rIvf-~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~--~~-- 124 (378)
|||++ +|+.. -..-+.-|++..+. ..+++...|+|.... .-+.++.+.++|+...-+.... ..
T Consensus 1 ~~i~~~~gtr~-~~~~~~p~~~~l~~-~~~~~~~~~~tg~h~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 68 (365)
T TIGR00236 1 LKVSIVLGTRP-EAIKMAPLIRALKK-YPEIDSYVIVTAQHR----------EMLDQVLDLFHLPPDYDLNIMSPGQTLG 68 (365)
T ss_pred CeEEEEEecCH-HHHHHHHHHHHHhh-CCCCCEEEEEeCCCH----------HHHHHHHHhcCCCCCeeeecCCCCCCHH
Confidence 46755 45442 22233333333211 125788888885431 3577888889997432111111 11
Q ss_pred c------HHHHHHHHhcCCcEEEEecCCC-cCChhhhc-CCCCceEEEccCC
Q 048078 125 E------DAFLSNLRALQPELCITAAYGN-ILPSKFLN-IPPMGTVNIHPSL 168 (378)
Q Consensus 125 ~------~~~~~~l~~~~~Dliv~~~~~~-ilp~~il~-~~~~g~iNiHpSl 168 (378)
. ..+.+.+++.+||++++.|... .+...+.. ..+..++.+|.++
T Consensus 69 ~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~ 120 (365)
T TIGR00236 69 EITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL 120 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC
Confidence 0 2355678899999999997422 12111111 1233467777765
No 209
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=40.05 E-value=1.3e+02 Score=27.23 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=22.3
Q ss_pred CceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcC
Q 048078 49 KKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 49 ~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
.++|++.| ++.++..+.+.|++. +++|+++..+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~------g~~V~~~~r~ 39 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD------GAEVIVVDIC 39 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCC
Confidence 35789999 555666677888774 5777655443
No 210
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=40.01 E-value=56 Score=34.24 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=30.0
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
.||+++|.++.+..+++++.+. ++++++|.++++.
T Consensus 3 ~kvLIan~Geia~~iiraar~l------Gi~~V~v~s~~d~ 37 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACREL------GIKTVAVYSEADK 37 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHc------CCeEEEEeccccc
Confidence 5899999999999999998874 7999999887653
No 211
>PRK08374 homoserine dehydrogenase; Provisional
Probab=39.88 E-value=1.1e+02 Score=30.27 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=48.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCC----CCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCC-CCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSS----PDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTP-ERA 123 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~----~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~-~~~ 123 (378)
++||+++|.+..+..+++.|.+.... ....++|++|......... ..-+....+.++.++.+-... +.. ...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~-~~Gid~~~l~~~~~~~~~~~~--~~~~~~~ 78 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWL-PEDIDLREAKEVKENFGKLSN--WGNDYEV 78 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccC-CCCCChHHHHHhhhccCchhh--ccccccc
Confidence 58999999999988888877663211 0123678887642211100 011233445555555553311 110 000
Q ss_pred CcHHHHHHHHhcCCcEEEEec
Q 048078 124 GEDAFLSNLRALQPELCITAA 144 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~ 144 (378)
.+....+.++...+|++|=+.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t 99 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVT 99 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECC
Confidence 011233455566789888544
No 212
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=39.85 E-value=97 Score=29.86 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.0
Q ss_pred ceEEEEecCcchHHHHHHHHHc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
|||+|+|.+..+.+..+.|++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~ 22 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG 22 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC
Confidence 5899999999999999999875
No 213
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=39.80 E-value=1.2e+02 Score=30.49 Aligned_cols=89 Identities=12% Similarity=0.049 Sum_probs=54.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCC-------
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPE------- 121 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~------- 121 (378)
..||++.-|+..-..++-.|+.. .++++.+|..+... .....++++|+++|||++.+.-.+
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~-----~G~eV~av~~~~~~-------~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~ 72 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQE-----QGYEIVGVTMRVWG-------DEPQDARELAARMGIEHYVADERVPFKDTIV 72 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHH-----cCCcEEEEEecCcc-------hhHHHHHHHHHHhCCCEEEEeChHHHHHHHH
Confidence 35888888886656665556654 26788887764211 012468899999999976431110
Q ss_pred ----------C-----------CCcHHHHHHHHhcCCcEEEEecCCCcC
Q 048078 122 ----------R-----------AGEDAFLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 122 ----------~-----------~~~~~~~~~l~~~~~Dliv~~~~~~il 149 (378)
. +.-..+.+..++.++|++....|.++-
T Consensus 73 ~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~ 121 (362)
T PRK14664 73 KNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLE 121 (362)
T ss_pred HHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccc
Confidence 0 000123455567788888887787653
No 214
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=39.75 E-value=1.2e+02 Score=27.82 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=19.5
Q ss_pred ceEEEEecC-cchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGSP-QVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs~-~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
|+|++.|.. ..+....+.|++. +++|+++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~------G~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ------GHKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCEEEEEE
Confidence 678889854 4555566777664 57766543
No 215
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=39.69 E-value=1.1e+02 Score=29.66 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=66.5
Q ss_pred ceEEEEecCc-chHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
++.+++=|+. .+.++..+|- +.+.+.+||.| .+.|.+ +.-.+.+.++..|||+..|.+-.+..+.++
T Consensus 164 ~~~~IIDsaaG~gCpVi~sl~--------~aD~ai~VTEP-Tp~glh---D~kr~~el~~~f~ip~~iViNr~~~g~s~i 231 (284)
T COG1149 164 ADLLIIDSAAGTGCPVIASLK--------GADLAILVTEP-TPFGLH---DLKRALELVEHFGIPTGIVINRYNLGDSEI 231 (284)
T ss_pred cceeEEecCCCCCChHHHhhc--------cCCEEEEEecC-Cccchh---HHHHHHHHHHHhCCceEEEEecCCCCchHH
Confidence 5677765543 4567777764 45677788865 455543 122467889999999876665444445578
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLN 155 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~ 155 (378)
.+..++.+.+++.-+=|...+++...+
T Consensus 232 e~~~~e~gi~il~~IPyd~~i~~~~~~ 258 (284)
T COG1149 232 EEYCEEEGIPILGEIPYDKDIPEAYVN 258 (284)
T ss_pred HHHHHHcCCCeeEECCcchhHHHHHhC
Confidence 888889999999999998888887765
No 216
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=39.63 E-value=87 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.7
Q ss_pred CceEEEEecCcchHHHHHHHHHc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
..||+++|.+..+....+.|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~ 41 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAEL 41 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC
Confidence 57899999998888888888764
No 217
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=39.06 E-value=3.2e+02 Score=27.08 Aligned_cols=99 Identities=12% Similarity=0.153 Sum_probs=49.9
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHH----HHHHHHCCCCCceecCCCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPV----AQYALDRGFPADLIFTPERA 123 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v----~~~A~~~gIp~~~v~~~~~~ 123 (378)
..+||+++|.... .++..|+.... ..+.++. ++.|+... + +..+ +++|++.|..+. + .++
T Consensus 154 ~g~~va~vGd~~~--~v~~Sl~~~~~--~~g~~v~--~~~P~~~~-----~-~~~~~~~~~~~~~~~g~~~~-~--~~d- 217 (331)
T PRK02102 154 KGLKLAYVGDGRN--NMANSLMVGGA--KLGMDVR--ICAPKELW-----P-EEELVALAREIAKETGAKIT-I--TED- 217 (331)
T ss_pred CCCEEEEECCCcc--cHHHHHHHHHH--HcCCEEE--EECCcccc-----c-CHHHHHHHHHHHHHcCCeEE-E--EcC-
Confidence 4689999997521 13333332211 0245543 33343211 1 1223 345666787632 1 111
Q ss_pred CcHHHHHHHHhcCCcEEEEecC-----------------CCcCChhhhc-CCCCceEEEccCC
Q 048078 124 GEDAFLSNLRALQPELCITAAY-----------------GNILPSKFLN-IPPMGTVNIHPSL 168 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~-----------------~~ilp~~il~-~~~~g~iNiHpSl 168 (378)
+.+.+ .++|++.+-.| .+.|.+++++ ..+..++-+||.+
T Consensus 218 ----~~ea~--~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP 274 (331)
T PRK02102 218 ----PEEAV--KGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLP 274 (331)
T ss_pred ----HHHHh--CCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCC
Confidence 12223 36777776544 3456667787 3566789999854
No 218
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=38.56 E-value=92 Score=30.58 Aligned_cols=72 Identities=26% Similarity=0.311 Sum_probs=42.3
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
+..|-||+++.-+ +..+|++| +++.++|= +.+ ..|.-+.++... . +-......+
T Consensus 55 pknPekVvv~D~g--aLD~ld~l---------Gve~~~v~--~~~-------~~P~yL~~y~~d---k---y~nvGtlfE 108 (320)
T COG4607 55 PKNPEKVVVLDLG--ALDTLDAL---------GVEVVAVG--PGK-------NLPAYLQKYKDD---K---YANVGTLFE 108 (320)
T ss_pred cCCCceEEEecch--hhhhHHHh---------CCcccccc--CCC-------CccHHHHHhccC---C---ccccCcccC
Confidence 5678899999887 57777766 56655442 211 123334444432 1 112233333
Q ss_pred HHHHHHHHhcCCcEEEEec
Q 048078 126 DAFLSNLRALQPELCITAA 144 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~ 144 (378)
++ .+.|...+|||||.-+
T Consensus 109 PD-~Eai~a~kPdLIIigg 126 (320)
T COG4607 109 PD-YEAIAAAKPDLIIIGG 126 (320)
T ss_pred CC-HHHHHhcCCCEEEECc
Confidence 33 3678899999999765
No 219
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=38.48 E-value=57 Score=32.47 Aligned_cols=76 Identities=7% Similarity=0.048 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC----------------------------CCCCCCchHH
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL----------------------------LPLYRGAAPV 178 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl----------------------------LP~yRG~~pi 178 (378)
++-+.+++.+||++|+++=.+.- .=.++..+.=+|+..+.+ -..|+|...+
T Consensus 79 ~~~~~i~~~~PDvlViispdh~~-~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gd~eL 157 (335)
T PRK13363 79 RMRDAIEAARIDVAVIVGNDQME-LFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTYPVVPEL 157 (335)
T ss_pred HHHHHHHHhCCCEEEEEcCCchh-hcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCCCCCHHH
Confidence 45577889999999998754411 001111111133333222 2456778888
Q ss_pred HHHHHcCCcEEEEEEEEec-----CCCCCC
Q 048078 179 QRALQGGAKETGVSLAFTV-----RALDAG 203 (378)
Q Consensus 179 ~wai~~g~~~tGvTih~~~-----~~~D~G 203 (378)
-+.|...-...|+.+..++ .++|.|
T Consensus 158 A~~I~~~l~~~G~d~~~~~~~~~~~glDHG 187 (335)
T PRK13363 158 ARHMIRRLVDDGFDITALDRLPDGEGEGHA 187 (335)
T ss_pred HHHHHHHHHHcCCCeeeecccccccCCCcc
Confidence 8888776666666666432 238999
No 220
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.45 E-value=1.5e+02 Score=30.67 Aligned_cols=99 Identities=15% Similarity=0.256 Sum_probs=61.6
Q ss_pred hHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHH
Q 048078 101 SPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQR 180 (378)
Q Consensus 101 ~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~w 180 (378)
..++-.|+++|++...++-....+.+++++.+++.+||++|+-+-.-+..+++=+.|.. + -+ ..-...
T Consensus 133 ~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGs--V-------sQ---VRe~t~ 200 (456)
T COG1066 133 QQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGS--V-------SQ---VREVAA 200 (456)
T ss_pred HHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCc--H-------HH---HHHHHH
Confidence 57889999999985444434456678899999999999999998766666655443320 0 00 112233
Q ss_pred HHHcCCcEEEEEEEEe----cCCCCCCCeeEEEEE
Q 048078 181 ALQGGAKETGVSLAFT----VRALDAGPVIAREKM 211 (378)
Q Consensus 181 ai~~g~~~tGvTih~~----~~~~D~G~Ii~Q~~~ 211 (378)
++++=.++.|++++.+ -++-=+||=+...-+
T Consensus 201 ~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmV 235 (456)
T COG1066 201 ELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMV 235 (456)
T ss_pred HHHHHHHHcCCeEEEEEEEcccccccCchheeeee
Confidence 4444445566666543 455556665555443
No 221
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=38.37 E-value=1.9e+02 Score=28.72 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=53.5
Q ss_pred CceEEEEecC--cchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 49 KKPLVFLGSP--QVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 49 ~~rIvf~Gs~--~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
.++|+++|.. ....+.+.. +.. .+.++.. +.|+...-. ......+.+++++.|..+. ..++
T Consensus 156 gl~va~vGD~~~~v~~S~~~~-~~~-----~G~~v~~--~~P~~~~~~--~~~~~~~~~~~~~~g~~~~---~~~d---- 218 (334)
T PRK12562 156 EMTLVYAGDARNNMGNSMLEA-AAL-----TGLDLRL--VAPQACWPE--ASLVAECSALAQKHGGKIT---LTED---- 218 (334)
T ss_pred CcEEEEECCCCCCHHHHHHHH-HHH-----cCCEEEE--ECCcccCCc--HHHHHHHHHHHHHcCCeEE---EEcC----
Confidence 5899999974 222222232 222 2565433 333321000 0001122356677787632 1111
Q ss_pred HHHHHHHhcCCcEEEEecC------------------CCcCChhhhcCC-CCceEEEccCCCCCCCC
Q 048078 127 AFLSNLRALQPELCITAAY------------------GNILPSKFLNIP-PMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~------------------~~ilp~~il~~~-~~g~iNiHpSlLP~yRG 174 (378)
+.+.+ .++|++.+-.| .+.|.+++++.. +-.++-+|| ||.+|+
T Consensus 219 -~~~a~--~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc--LP~~~~ 280 (334)
T PRK12562 219 -IAAGV--KGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC--LPAFHD 280 (334)
T ss_pred -HHHHh--CCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC--CCCCCc
Confidence 22333 35777777554 345666788764 566899998 688764
No 222
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=37.93 E-value=1.6e+02 Score=26.71 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=21.6
Q ss_pred ceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.+|++.| |+.++..+.+.|++. +++|+++.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~------g~~v~~~~ 35 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE------GAKVVIAD 35 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC------CCeEEEEe
Confidence 4788888 566777788888874 57776553
No 223
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=37.92 E-value=1.6e+02 Score=29.33 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.3
Q ss_pred CcCChhhhcCCCCceEEEccCCCCCCCC
Q 048078 147 NILPSKFLNIPPMGTVNIHPSLLPLYRG 174 (378)
Q Consensus 147 ~ilp~~il~~~~~g~iNiHpSlLP~yRG 174 (378)
+.|.+++++..+ .++-+|| ||.+||
T Consensus 275 y~v~~~ll~~a~-~~i~mHc--LP~~Rg 299 (335)
T PRK04523 275 FIVDERKMALTN-NGVFSHC--LPLRRN 299 (335)
T ss_pred CcCCHHHHhCCC-CCEEECC--CCCCCC
Confidence 446666666655 5788887 467765
No 224
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=37.88 E-value=68 Score=24.09 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=34.6
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCC
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFP 113 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp 113 (378)
||+++|.+..+......|.+. +.++..+. ..+.....-.......+.++.++.||.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~-~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIE-RSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEE-SSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEe-ccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 799999999999888888764 56775544 444332111111112355667777887
No 225
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=37.85 E-value=1e+02 Score=35.43 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=27.3
Q ss_pred CCCceEEEEecCcc-----------hHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 47 SRKKPLVFLGSPQV-----------SVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~-----------a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
..+.||+++|++.. ++.+.++|.+. +++++.|=++|..
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~------G~~vI~v~~npet 600 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREL------GYETIMINYNPET 600 (1050)
T ss_pred CCCceEEEecCcccccccccccchHHHHHHHHHHhC------CCEEEEEecCCcc
Confidence 45689999999864 45667777664 7888877666643
No 226
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=37.71 E-value=1.2e+02 Score=25.28 Aligned_cols=78 Identities=9% Similarity=0.078 Sum_probs=39.8
Q ss_pred ceEEEEecCcchHHHH-HHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLGSPQVSVNVL-DALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L-~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
+||+|+=+++..-+-+ ++|++.... ..+++..-=+.+ ..+ ...+.+..+++||+... ..+..+.+..
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~--~~~~v~SAG~~~-------~~~-~p~a~~~l~e~Gid~~~-~~s~~l~~~~- 68 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGA--GNIAVTSAGLEV-------SRV-HPTAIEVMSEIGIDISG-QTSKPLENFH- 68 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcC--CCEEEEcCcCCC-------CCC-CHHHHHHHHHhCCCccc-CccccCChhH-
Confidence 5788888887554433 566654211 123322111111 112 23456677789999321 2233333221
Q ss_pred HHHHHhcCCcEEEEec
Q 048078 129 LSNLRALQPELCITAA 144 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~ 144 (378)
...+|++|++.
T Consensus 69 -----~~~~D~iitm~ 79 (126)
T TIGR02689 69 -----PEDYDVVISLC 79 (126)
T ss_pred -----hcCCCEEEEeC
Confidence 24799999985
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=37.52 E-value=75 Score=28.86 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=45.1
Q ss_pred ceEEEEecCcchHHHH-HHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCC-cHH
Q 048078 50 KPLVFLGSPQVSVNVL-DALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAG-EDA 127 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L-~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~-~~~ 127 (378)
.-|+|+|-...+.++. -.|-..... .+..|..|-++.-+..+ ...++.+|+..|+| ++...... ..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~--~~~~v~lis~D~~R~ga------~eQL~~~a~~l~vp---~~~~~~~~~~~~ 70 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL--KGKKVALISADTYRIGA------VEQLKTYAEILGVP---FYVARTESDPAE 70 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEESTSSTHH------HHHHHHHHHHHTEE---EEESSTTSCHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh--ccccceeecCCCCCccH------HHHHHHHHHHhccc---cchhhcchhhHH
Confidence 4577788665555532 223222111 13444444444333221 24678899999999 54433322 222
Q ss_pred ----HHHHHHhcCCcEEEEecCCCcC
Q 048078 128 ----FLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 128 ----~~~~l~~~~~Dliv~~~~~~il 149 (378)
.++.++..+.|++++=.-|+--
T Consensus 71 ~~~~~l~~~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 71 IAREALEKFRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHHHHHHHHHTTSSEEEEEE-SSSS
T ss_pred HHHHHHHHHhhcCCCEEEEecCCcch
Confidence 2334445678999987765443
No 228
>PRK07680 late competence protein ComER; Validated
Probab=37.31 E-value=97 Score=29.32 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=19.6
Q ss_pred ceEEEEecCcchHHHHHHHHHc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
|+|+|+|.+..+......|++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~ 22 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES 22 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 5899999999999999998875
No 229
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=37.24 E-value=92 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=22.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVA 82 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~ 82 (378)
|||+|+|.+..+....+.|++. +++|.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~ 27 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVV 27 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEE
Confidence 5899999999999999999875 56654
No 230
>PLN02735 carbamoyl-phosphate synthase
Probab=36.88 E-value=1.2e+02 Score=35.31 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=27.0
Q ss_pred CCceEEEEecCcc-----------hHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 48 RKKPLVFLGSPQV-----------SVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 48 ~~~rIvf~Gs~~~-----------a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
...||+++|++.. +..++++|.+. ++++++|=++|+
T Consensus 22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~------G~~Vi~vd~np~ 68 (1102)
T PLN02735 22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEE------GYEVVLINSNPA 68 (1102)
T ss_pred CCCEEEEECCCccccccceeecchHHHHHHHHHHc------CCEEEEEeCCcc
Confidence 4579999999974 33477888774 799888876664
No 231
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=36.70 E-value=50 Score=31.81 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEcc---------CC-CCCCCCchHHHHHHHcCCcEEEEEEEE
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHP---------SL-LPLYRGAAPVQRALQGGAKETGVSLAF 195 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHp---------Sl-LP~yRG~~pi~wai~~g~~~tGvTih~ 195 (378)
+++-+.+++.+||++|+++=.+..- -.....+.-+++..+ +. -+.|+|...+-+.|...-...|+.+..
T Consensus 36 ~~~~~~v~~~~pD~ivvi~~dH~~~-f~~~~~P~f~i~~~~~~g~~~~~~~~~~~~~~g~~eLA~~i~~~l~~~g~~~~~ 114 (277)
T cd07368 36 AICAERLAALQVTSVVVIGDDHYTL-FGTYCLPMYLIGTGDVDGPYDPLPGLPRAVIENNEPLAHHIMQHGLEYGIDWAV 114 (277)
T ss_pred HHHHHHHHHcCCCEEEEEcCchHhh-hhhccCCceEEecccccCCccccCCCCcccCcCCHHHHHHHHHHHHHcCCCEee
Confidence 3556788899999999998222221 111112222444332 22 345899999999888766666765544
Q ss_pred e-cCCCCCCC
Q 048078 196 T-VRALDAGP 204 (378)
Q Consensus 196 ~-~~~~D~G~ 204 (378)
. +-++|.|.
T Consensus 115 ~~~~~lDHG~ 124 (277)
T cd07368 115 ARSFTVDHAA 124 (277)
T ss_pred ecCcCCCcch
Confidence 3 44578886
No 232
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=36.19 E-value=1.7e+02 Score=28.32 Aligned_cols=97 Identities=14% Similarity=0.236 Sum_probs=56.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCC-----ceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSI-----FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERA 123 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~-----~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~ 123 (378)
.-||+|+|.+.-+..+.+.|++........ -+| .+++....-..++..-...-+.+|++.+-.
T Consensus 25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i--~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~---------- 92 (279)
T cd05312 25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKI--WLVDSKGLLTKDRKDLTPFKKPFARKDEEK---------- 92 (279)
T ss_pred hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeE--EEEcCCCeEeCCCCcchHHHHHHHhhcCcc----------
Confidence 579999999988888888877751110000 122 122222111111111123345566653320
Q ss_pred CcHHHHHHHHhcCCcEEEEec-CCCcCChhhhcCC
Q 048078 124 GEDAFLSNLRALQPELCITAA-YGNILPSKFLNIP 157 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~-~~~ilp~~il~~~ 157 (378)
....+.+.++..+||++|=++ -+.++.+++++..
T Consensus 93 ~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~M 127 (279)
T cd05312 93 EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAM 127 (279)
T ss_pred cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHH
Confidence 113477888889999999888 4789999999864
No 233
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=36.10 E-value=56 Score=29.40 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=22.4
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
|||+++|.+..+.+..-.|.+. +++|++|=.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEEEEeCCh
Confidence 8999999999888887777664 68988875443
No 234
>PRK08291 ectoine utilization protein EutC; Validated
Probab=36.08 E-value=3.1e+02 Score=26.88 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=59.4
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHH----CCCCCceecCCCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD----RGFPADLIFTPERA 123 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~----~gIp~~~v~~~~~~ 123 (378)
...+|+++|++..+...+.++.... +++-+.|+..... ...+++++ .|++ +...++
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~-----------~a~~l~~~~~~~~g~~---v~~~~d- 190 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAA-----------KAEAYAADLRAELGIP---VTVARD- 190 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHH-----------HHHHHHHHHhhccCce---EEEeCC-
Confidence 3469999999999888888887542 4555666643321 34555554 3565 221111
Q ss_pred CcHHHHHHHHhcCCcEEEEecC--CCcCChhhhcCCCCceEEEccCCCCCCCCchHH
Q 048078 124 GEDAFLSNLRALQPELCITAAY--GNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPV 178 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~--~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi 178 (378)
+.+.+ .++|+++++.- ..++..+.+. +...++.=.+.+|.-|-..|-
T Consensus 191 ----~~~al--~~aDiVi~aT~s~~p~i~~~~l~--~g~~v~~vg~d~~~~rEld~~ 239 (330)
T PRK08291 191 ----VHEAV--AGADIIVTTTPSEEPILKAEWLH--PGLHVTAMGSDAEHKNEIAPA 239 (330)
T ss_pred ----HHHHH--ccCCEEEEeeCCCCcEecHHHcC--CCceEEeeCCCCCCcccCCHH
Confidence 12333 25899988753 3445554443 222456555666766666543
No 235
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.72 E-value=2.5e+02 Score=26.68 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCcee--cCCCCCCcHHHHHHHHhcCCcEEEEecCCC
Q 048078 79 FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLI--FTPERAGEDAFLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 79 ~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v--~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 147 (378)
.+-++++.. +...|+. ....+.+.+++.|+.+... +.+...+-...+..+++.+||++++.+++.
T Consensus 137 ~~~vail~~-~~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~ 203 (312)
T cd06346 137 YKSVATTYI-NNDYGVG---LADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPE 203 (312)
T ss_pred CCeEEEEEc-cCchhhH---HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccc
Confidence 444555553 3334432 1234677888899984321 222333334567788889999999998864
No 236
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=35.46 E-value=1.5e+02 Score=29.56 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=38.6
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCC----CCC--CccCChHHHHHHHHCCCCCcee
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRR----DRG--RKVLPSPVAQYALDRGFPADLI 117 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~----grg--~~~~~~~v~~~A~~~gIp~~~v 117 (378)
+||++.-|+-.-..++-.|+... ++++.+|..+-.... .++ .......++++|+++|||++.+
T Consensus 1 ~kVlValSGGvDSsvla~lL~~~-----G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vv 69 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKEQ-----GYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVV 69 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHHc-----CCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEE
Confidence 47888888876666666666542 577777755421110 011 1112346889999999997643
No 237
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=35.41 E-value=75 Score=31.56 Aligned_cols=128 Identities=13% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCC-----CCCceecCCC
Q 048078 48 RKKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG-----FPADLIFTPE 121 (378)
Q Consensus 48 ~~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~g-----Ip~~~v~~~~ 121 (378)
..++|++-|. +-++.-+++.||++ ++.|.+.|=++.+.++ .+...+.. +. ++..+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r------GY~V~gtVR~~~~~k~----------~~~L~~l~~a~~~l~---l~~aD 65 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR------GYTVRGTVRDPEDEKK----------TEHLRKLEGAKERLK---LFKAD 65 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC------CCEEEEEEcCcchhhh----------HHHHHhcccCcccce---EEecc
Confidence 4678888884 44667788999986 7999998866554221 12222221 33 55544
Q ss_pred CCCcHHHHHHHHhcCCcEEEEecCCCcCCh-----hhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCC--cE----EE
Q 048078 122 RAGEDAFLSNLRALQPELCITAAYGNILPS-----KFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGA--KE----TG 190 (378)
Q Consensus 122 ~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~-----~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~--~~----tG 190 (378)
=.....+.+.+ .++|.++-.+...-... ++++ |.-+|.--+--|+..-. +. +.
T Consensus 66 L~d~~sf~~ai--~gcdgVfH~Asp~~~~~~~~e~~li~--------------pav~Gt~nVL~ac~~~~sVkrvV~TSS 129 (327)
T KOG1502|consen 66 LLDEGSFDKAI--DGCDGVFHTASPVDFDLEDPEKELID--------------PAVKGTKNVLEACKKTKSVKRVVYTSS 129 (327)
T ss_pred ccccchHHHHH--hCCCEEEEeCccCCCCCCCcHHhhhh--------------HHHHHHHHHHHHHhccCCcceEEEecc
Confidence 44444555665 35999998887544311 3444 66677666666666544 22 12
Q ss_pred EEEEEec-CCCCCCCeeEEEE
Q 048078 191 VSLAFTV-RALDAGPVIAREK 210 (378)
Q Consensus 191 vTih~~~-~~~D~G~Ii~Q~~ 210 (378)
++.-... ...+.+.++.+..
T Consensus 130 ~aAv~~~~~~~~~~~vvdE~~ 150 (327)
T KOG1502|consen 130 TAAVRYNGPNIGENSVVDEES 150 (327)
T ss_pred HHHhccCCcCCCCCccccccc
Confidence 2222222 4456666665543
No 238
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.34 E-value=52 Score=31.38 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=22.5
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
|||+++|.+..+...-..|.++ +++|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEe
Confidence 6899999998877777777664 56765543
No 239
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=35.17 E-value=96 Score=31.04 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=52.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc-
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE- 125 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~- 125 (378)
|-||. ||.+ +..-|..++... +.+-+.|||.+.... ......+.+..++.|+.+. ++. .. +...
T Consensus 6 p~~i~-~G~g--~l~~l~~~l~~~-----g~~~~lvv~~~~~~~----~~~~~~v~~~L~~~~~~~~-~f~~v~~~p~~~ 72 (377)
T cd08176 6 PPTNL-FGAG--AIKEIGDELKNL-----GFKKALIVTDKGLVK----IGVVEKVTDVLDEAGIDYV-IYDGVKPNPTIT 72 (377)
T ss_pred CCeEE-ECcC--HHHHHHHHHHHh-----CCCeEEEECCchHhh----cCcHHHHHHHHHHcCCeEE-EeCCCCCCCCHH
Confidence 34554 6877 455565555531 334567888654321 0123457788888899854 332 11 1222
Q ss_pred --HHHHHHHHhcCCcEEEEecCCCcC
Q 048078 126 --DAFLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 126 --~~~~~~l~~~~~Dliv~~~~~~il 149 (378)
++..+.+++.++|++|-+|=|..+
T Consensus 73 ~v~~~~~~~~~~~~D~IIavGGGS~i 98 (377)
T cd08176 73 NVKDGLAVFKKEGCDFIISIGGGSPH 98 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 234566778899999999987765
No 240
>PRK06545 prephenate dehydrogenase; Validated
Probab=35.13 E-value=1.4e+02 Score=29.73 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.4
Q ss_pred ceEEEEecCcchHHHHHHHHHc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
.||+|+|.+.++......|.+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999999775
No 241
>PRK07206 hypothetical protein; Provisional
Probab=35.09 E-value=1.8e+02 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=26.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
+.+++++++...+....+++.+. +++++.|.++++
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~------G~~~v~v~~~~~ 36 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKR------GIEPIAVTSSCL 36 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHc------CCeEEEEEcCCC
Confidence 46799999887676777777764 788888877654
No 242
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=34.78 E-value=1.1e+02 Score=31.22 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=25.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.+||+|+|.+..+.+.-..|.+. +++|.++=
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D 33 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVD 33 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEe
Confidence 57999999999999998888875 58876653
No 243
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=34.77 E-value=1e+02 Score=28.12 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=46.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..||+++|.++.+....+.|++. +.+|. ||+ +.- ...+.+++.+..+. +. ........
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~------ga~V~-VIs-~~~---------~~~l~~l~~~~~i~---~~-~~~~~~~~- 67 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY------GAHIV-VIS-PEL---------TENLVKLVEEGKIR---WK-QKEFEPSD- 67 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEE-EEc-CCC---------CHHHHHHHhCCCEE---EE-ecCCChhh-
Confidence 56999999999999889999886 45654 444 221 12456777665454 21 11111111
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhh
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFL 154 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il 154 (378)
+ .++|++|++.=..-+...+-
T Consensus 68 ---l--~~adlViaaT~d~elN~~i~ 88 (202)
T PRK06718 68 ---I--VDAFLVIAATNDPRVNEQVK 88 (202)
T ss_pred ---c--CCceEEEEcCCCHHHHHHHH
Confidence 2 36888887754444444443
No 244
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=34.65 E-value=49 Score=31.93 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=35.1
Q ss_pred HHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCC
Q 048078 105 QYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILP 150 (378)
Q Consensus 105 ~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp 150 (378)
+.=++.|||.+-++-+++.-.+.+.+.|++..||++|+-|.--++.
T Consensus 122 ~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K 167 (283)
T TIGR02855 122 KLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSK 167 (283)
T ss_pred HHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCchhhhc
Confidence 3345789997665666666667788999999999999999866653
No 245
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=34.65 E-value=76 Score=30.15 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=22.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
|||+++|.+.++......|.++ +++|..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEE
Confidence 6899999999887777777664 57766554
No 246
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=34.43 E-value=1.5e+02 Score=30.38 Aligned_cols=71 Identities=7% Similarity=0.031 Sum_probs=44.8
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCC-CCCceecCCCCCCcH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRG-FPADLIFTPERAGED 126 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~g-Ip~~~v~~~~~~~~~ 126 (378)
...||+++|+|..+..+.+.|.+. +..-+. |+++.. ....++|++++ .. +... +
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~------g~~~I~-V~nRt~----------~ra~~La~~~~~~~---~~~~-----~ 234 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTAL------APKQIM-LANRTI----------EKAQKITSAFRNAS---AHYL-----S 234 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHc------CCCEEE-EECCCH----------HHHHHHHHHhcCCe---EecH-----H
Confidence 356899999999999999999764 343333 444432 23577888876 44 2111 2
Q ss_pred HHHHHHHhcCCcEEEEecC
Q 048078 127 AFLSNLRALQPELCITAAY 145 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~ 145 (378)
++.+.+ .++|++|++.-
T Consensus 235 ~l~~~l--~~aDiVI~aT~ 251 (414)
T PRK13940 235 ELPQLI--KKADIIIAAVN 251 (414)
T ss_pred HHHHHh--ccCCEEEECcC
Confidence 233334 35899998774
No 247
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.40 E-value=1.7e+02 Score=30.82 Aligned_cols=117 Identities=12% Similarity=0.091 Sum_probs=67.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.|++++|.+..+...-+.|.+. .+++++.+-+..... ...+.+.++..+-.. ++. + +..++
T Consensus 305 Gkrv~I~gd~~~a~~l~~~L~~E-----LGm~vv~~g~~~~~~--------~~~~~~~~~~~~~~~--~i~-~--D~~ei 366 (513)
T CHL00076 305 GKKAVVFGDATHAASMTKILARE-----MGIRVSCAGTYCKHD--------AEWFKEQVQGFCDEI--LIT-D--DHTEV 366 (513)
T ss_pred CCEEEEEcCchHHHHHHHHHHHh-----CCCEEEEecCcccch--------hHHHHHHHHHhccCc--EEe-c--CHHHH
Confidence 36899999887777776677643 478876443332211 012233333333221 222 1 34667
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCC------CceEEEccC--CCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPP------MGTVNIHPS--LLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~------~g~iNiHpS--lLP~yRG~~pi~wai~~ 184 (378)
.+.|++.+||+++--.+.+.+.++ +..|- ..+-+++.+ ..=.|+|+.-+...|.|
T Consensus 367 ~~~I~~~~pdliiGs~~er~ia~~-lgiP~~~is~Pv~~~~~p~~~~p~~Gy~Ga~~l~~~i~n 429 (513)
T CHL00076 367 GDMIARVEPSAIFGTQMERHIGKR-LDIPCGVISAPVHIQNFPLGYRPFLGYEGTNQIADLVYN 429 (513)
T ss_pred HHHHHhcCCCEEEECchhhHHHHH-hCCCEEEeecccccccccCCCCCccchHHHHHHHHHHHH
Confidence 788899999999998888777544 44331 111223333 33457888777777777
No 248
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=34.39 E-value=2.4e+02 Score=25.14 Aligned_cols=31 Identities=13% Similarity=0.008 Sum_probs=20.7
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.++|++.|. +..+..+.+.|++. +++|+++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~------g~~v~~~~ 36 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD------GAKVVIYD 36 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe
Confidence 368999985 44666677888764 57764443
No 249
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=34.20 E-value=55 Score=31.63 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCC-----------CCCCCchHHHHHHHcCCcEEEEEEE
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLL-----------PLYRGAAPVQRALQGGAKETGVSLA 194 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlL-----------P~yRG~~pi~wai~~g~~~tGvTih 194 (378)
+++-+.+++.+||++|+++-.|.-- =+.+..+.=+|+..+..- ..++|...+-+.|...-...|+.+-
T Consensus 38 ~~~~~~v~~~~PDvvVvis~dH~~~-ff~d~~p~f~i~~~~~~~g~~~~~g~~~~~~~~~~~~lA~~i~~~l~~~gid~~ 116 (278)
T PRK13364 38 PPVREWLEKVKPDVAVVFYNDHGLN-FFLDKMPTFAVGAAPEYSNADEGWGIPTLAPFKGDTELSWHIIESLVEEEFDIT 116 (278)
T ss_pred HHHHHHHHHhCCCEEEEECCchHhh-hccccCCeEEEeeCceecCChhhcCCCCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 3556788899999999999322110 011111111333333322 4566777788888877777777666
Q ss_pred Eec-CCCCCCC
Q 048078 195 FTV-RALDAGP 204 (378)
Q Consensus 195 ~~~-~~~D~G~ 204 (378)
... -++|.|-
T Consensus 117 ~~~~~~lDHG~ 127 (278)
T PRK13364 117 TCQEMLVDHAF 127 (278)
T ss_pred cccCCCCCcch
Confidence 543 4588876
No 250
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=34.17 E-value=2.4e+02 Score=27.18 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.2
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
+|||++.|. +..+...++++.+. .++++++.+-.++.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~ 39 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGS 39 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCc
Confidence 689999996 66777777777664 36899988876654
No 251
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=34.11 E-value=1.3e+02 Score=28.10 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=40.4
Q ss_pred eEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHH
Q 048078 51 PLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFL 129 (378)
Q Consensus 51 rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~ 129 (378)
||++.|. +..+..+++.|++.. ..++|+++- ..... .+. ..+.......++. ++..+-.+.+.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~----~~~~v~~~~-~~~~~-~~~-----~~~~~~~~~~~~~---~~~~Dl~~~~~~~ 66 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH----PDAEVIVLD-KLTYA-GNL-----ENLADLEDNPRYR---FVKGDIGDRELVS 66 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC----CCCEEEEec-CCCcc-hhh-----hhhhhhccCCCcE---EEEcCCcCHHHHH
Confidence 5788885 566777778887752 125665432 11110 000 0111111112333 3322222334455
Q ss_pred HHHHhcCCcEEEEecC
Q 048078 130 SNLRALQPELCITAAY 145 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~ 145 (378)
+.++..++|++|-++.
T Consensus 67 ~~~~~~~~d~vi~~a~ 82 (317)
T TIGR01181 67 RLFTEHQPDAVVHFAA 82 (317)
T ss_pred HHHhhcCCCEEEEccc
Confidence 6677778999987774
No 252
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=34.09 E-value=1.2e+02 Score=28.33 Aligned_cols=85 Identities=13% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
..+..+|+++|.|..+..=++.|++. +.+| -||++.-. ..+.+++....|. +.. .. .+
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~------gA~V-tVVap~i~----------~el~~l~~~~~i~---~~~-r~-~~ 79 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKK------GCYV-YILSKKFS----------KEFLDLKKYGNLK---LIK-GN-YD 79 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhC------CCEE-EEEcCCCC----------HHHHHHHhCCCEE---EEe-CC-CC
Confidence 33478999999999888888888886 3444 46654322 2577787766776 332 22 22
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCC
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIP 157 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~ 157 (378)
++. + .+++++|.+.=-.-+...+....
T Consensus 80 ~~d---l--~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 80 KEF---I--KDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred hHH---h--CCCcEEEECCCCHHHHHHHHHHH
Confidence 222 2 46888888766566666665544
No 253
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.07 E-value=2.1e+02 Score=22.57 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=19.9
Q ss_pred hHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHh
Q 048078 101 SPVAQYALDRGFPADLIFTPERAGEDAFLSNLRA 134 (378)
Q Consensus 101 ~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~ 134 (378)
..+++.|+++|+|+ .......-..+.+.|++
T Consensus 65 ~~vk~~akk~~ip~---~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 65 WKVKKAAKKYGIPI---IYSRSRGVSSLERALER 95 (97)
T ss_pred HHHHHHHHHcCCcE---EEECCCCHHHHHHHHHh
Confidence 36889999999994 33333334456666654
No 254
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=34.06 E-value=3.3e+02 Score=26.65 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=16.9
Q ss_pred CCcCChhhhcCCCCceEEEccCCCCCCCCc
Q 048078 146 GNILPSKFLNIPPMGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 146 ~~ilp~~il~~~~~g~iNiHpSlLP~yRG~ 175 (378)
.+.|.+++++.. +++-+|| ||.+||.
T Consensus 251 ~y~v~~elm~~~--~~~vmH~--lP~~Rg~ 276 (311)
T PRK14804 251 PYQINSSLMEKT--NAKVMHD--MPIHAGY 276 (311)
T ss_pred CCeECHHHHhCC--CCeEeCC--CCCCCCc
Confidence 344566666643 4778887 5788875
No 255
>PLN02253 xanthoxin dehydrogenase
Probab=33.97 E-value=2.2e+02 Score=26.42 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=20.0
Q ss_pred CceEEEEecC-cchHHHHHHHHHccCCCCCCceEEEE
Q 048078 49 KKPLVFLGSP-QVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 49 ~~rIvf~Gs~-~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
.+++++.|.. .++..+.+.|.+. +++|+.+
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~------G~~v~~~ 48 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKH------GAKVCIV 48 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCEEEEE
Confidence 4578888854 4666677777764 5776554
No 256
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=33.91 E-value=1.3e+02 Score=31.28 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
.+.|++++|.++.+...-+.|.+. .+.+++.+++. . +.. ..+..+
T Consensus 279 ~~k~vaI~gd~d~~~gl~~fL~~E-----lGm~~~~~~t~-------------------------~---v~~--~~D~~~ 323 (468)
T TIGR02014 279 GTARFGIVASETYARGIRHVLEDE-----LGLPCLFSLAR-------------------------K---AGS--KTDNNA 323 (468)
T ss_pred CCceEEEEcCHHHHHHHHHHHHHH-----CCCceEEEeec-------------------------c---eee--cCCHHH
Confidence 356778888877777776767633 35666666552 1 111 112356
Q ss_pred HHHHHHhcCCcEEEEecCCC-cCC-----hhhhc-CCCCceEEEccCCCC--CCCCchHHHHHHHc
Q 048078 128 FLSNLRALQPELCITAAYGN-ILP-----SKFLN-IPPMGTVNIHPSLLP--LYRGAAPVQRALQG 184 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~-ilp-----~~il~-~~~~g~iNiHpSlLP--~yRG~~pi~wai~~ 184 (378)
+.+.|++.+||+++--++.+ ++. -.+++ -||..+.+.|.+ -| -|||+.-+...|.|
T Consensus 324 i~~~i~~~~p~ll~Gss~er~~~a~~~~~~plIr~gfP~~i~dr~~~-~p~~GY~Ga~~ll~~I~N 388 (468)
T TIGR02014 324 VRKEIVQKQPLVLYGSMNEKIYLAEADAKSRFIPASFPGAIIRRATG-TPFMGYSGATWLVQEVCN 388 (468)
T ss_pred HHHHHhhcCCCEEEEChHhHHHHHhcCCCCCeEEecCCcchhhhcCC-CceeechhHHHHHHHHHH
Confidence 66778888899999888876 332 23333 134336666666 56 49999999988988
No 257
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=33.62 E-value=1.5e+02 Score=29.14 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=20.0
Q ss_pred CcCChhhhcCCCCceEEEccCCCCCCCCc
Q 048078 147 NILPSKFLNIPPMGTVNIHPSLLPLYRGA 175 (378)
Q Consensus 147 ~ilp~~il~~~~~g~iNiHpSlLP~yRG~ 175 (378)
+.|.+++++..+.+++-+|| ||.+||-
T Consensus 244 y~v~~~~l~~a~~~~i~mHc--LP~~Rg~ 270 (310)
T PRK13814 244 FRLTPEKLYSAKPDAIVMHP--GPVNREV 270 (310)
T ss_pred cccCHHHHHhcCCCCEEECC--CCCCCCC
Confidence 45677777777777888997 6788763
No 258
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=33.44 E-value=1.6e+02 Score=34.50 Aligned_cols=158 Identities=15% Similarity=0.090 Sum_probs=81.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
-.||+++||+.-++.+...|.+. +|. |.|+-..++..|. ..+||| -..-++.--+.=
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~------gh~-v~vyer~dr~ggl-------------l~ygip---nmkldk~vv~rr 1841 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA------GHT-VTVYERSDRVGGL-------------LMYGIP---NMKLDKFVVQRR 1841 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc------CcE-EEEEEecCCcCce-------------eeecCC---ccchhHHHHHHH
Confidence 68999999999888888888775 454 3455555554331 145666 111111101111
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCC-----CCCchHHHHHHHcCCcEEEEEEEEecCCCCCC
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPL-----YRGAAPVQRALQGGAKETGVSLAFTVRALDAG 203 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~-----yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G 203 (378)
++.+.+.+.+++.-.--++-++-+.|..-...++-.-.|--|+ -|-..-++.|+.-=++. |=-..|...|--
T Consensus 1842 v~ll~~egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~n---tk~lld~~~d~~ 1918 (2142)
T KOG0399|consen 1842 VDLLEQEGIRFVTNTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKN---TKSLLDSVLDGN 1918 (2142)
T ss_pred HHHHHhhCceEEeeccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHh---HHhhhccccccc
Confidence 2445556666666666666666666655444444444443332 34445555554322211 111233333322
Q ss_pred CeeEE--EEEEeCCCCCHHHHHHHHHHHHHH
Q 048078 204 PVIAR--EKMEVDDQIKAPELLVLLFSEGSE 232 (378)
Q Consensus 204 ~Ii~Q--~~~~I~~~dt~~~L~~kl~~~~~~ 232 (378)
-|=.+ +-+-|...||..+-.---...|+.
T Consensus 1919 ~~~~~gkkvivigggdtg~dcigtsvrhg~~ 1949 (2142)
T KOG0399|consen 1919 YISAKGKKVIVIGGGDTGTDCIGTSVRHGCK 1949 (2142)
T ss_pred eeccCCCeEEEECCCCccccccccchhhccc
Confidence 22222 346677788876655544444544
No 259
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=33.31 E-value=1.2e+02 Score=30.20 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=47.8
Q ss_pred EEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc---HHHH
Q 048078 53 VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE---DAFL 129 (378)
Q Consensus 53 vf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~---~~~~ 129 (378)
+++|.+ +...|...+... + .-+.|||++.... .....+.+..++.|+.+.......+... ++..
T Consensus 11 i~~G~g--~~~~l~~~l~~~-----g-~~~livtd~~~~~-----~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~ 77 (366)
T PRK09423 11 YVQGKG--ALARLGEYLKPL-----G-KRALVIADEFVLG-----IVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLV 77 (366)
T ss_pred EEECCC--HHHHHHHHHHHc-----C-CEEEEEEChhHHH-----HHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHH
Confidence 668887 456565555531 2 3466777643211 0223456667778887421111111122 3445
Q ss_pred HHHHhcCCcEEEEecCCCcC
Q 048078 130 SNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~~~il 149 (378)
+.+++.++|++|.+|=|..+
T Consensus 78 ~~~~~~~~d~IIavGGGsv~ 97 (366)
T PRK09423 78 AIAEENGCDVVIGIGGGKTL 97 (366)
T ss_pred HHHHhcCCCEEEEecChHHH
Confidence 66778899999999977665
No 260
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.99 E-value=1.5e+02 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=23.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEE
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVA 82 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~ 82 (378)
+|||+|+|.+.++...-+.|.++ +++|.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~------G~~V~ 31 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN------GHRVR 31 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCEEE
Confidence 58999999999988888888775 57774
No 261
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=32.89 E-value=1.8e+02 Score=28.56 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=20.4
Q ss_pred CceEEEEecCcchHHHHHHHHHc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
.+||+|+|.+..+....+.|.+.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC
Confidence 46899999999999999999875
No 262
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=32.79 E-value=1.3e+02 Score=23.46 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=24.7
Q ss_pred HHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecC
Q 048078 108 LDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 108 ~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~ 145 (378)
...|++++........ ..++.+..++.++|++|+...
T Consensus 66 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~ 102 (130)
T cd00293 66 AEAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSR 102 (130)
T ss_pred hcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCC
Confidence 3568885433322222 567888899999999998654
No 263
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=32.65 E-value=80 Score=29.90 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=15.7
Q ss_pred cHHHHHHHHhcCCcEEEEecCC
Q 048078 125 EDAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~ 146 (378)
++++++.|++.+||++++ |.|
T Consensus 146 ~~~i~~~I~~s~~dil~V-glG 166 (243)
T PRK03692 146 RQALFERIHASGAKIVTV-AMG 166 (243)
T ss_pred HHHHHHHHHhcCCCEEEE-ECC
Confidence 355788899999999875 444
No 264
>PRK10126 tyrosine phosphatase; Provisional
Probab=32.55 E-value=2.5e+02 Score=23.98 Aligned_cols=80 Identities=6% Similarity=0.026 Sum_probs=44.0
Q ss_pred CceEEEEecCcchHH-HHHHHHHccCCCCCCceEE--EEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 49 KKPLVFLGSPQVSVN-VLDALFNASSSPDSIFEVA--AIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~-~L~~L~~~~~~~~~~~ei~--~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
.+||+|+-+++..-+ .-++|++... ..++|. |+...+.. .......+.++++||+... ..+..+.+
T Consensus 2 ~~~iLFVC~gN~cRSpmAEa~~~~~~---~~~~v~SAG~~~~~g~-------~~~~~a~~~l~~~Gid~~~-h~sr~lt~ 70 (147)
T PRK10126 2 FNNILVVCVGNICRSPTAERLLQRYH---PELKVESAGLGALVGK-------GADPTAISVAAEHQLSLEG-HCARQISR 70 (147)
T ss_pred CCeEEEEcCCcHhHHHHHHHHHHHhc---CCeEEEeeeccCCCCC-------CCCHHHHHHHHHcCCCcCC-CccccCCH
Confidence 379999988875544 3356665421 124443 33211111 1234577888899999321 23344443
Q ss_pred HHHHHHHHhcCCcEEEEecC
Q 048078 126 DAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~ 145 (378)
+.+ ..+|+||++.-
T Consensus 71 ~~~------~~~DlIl~Md~ 84 (147)
T PRK10126 71 RLC------RNYDLILTMEK 84 (147)
T ss_pred HHh------ccCCEEEECCH
Confidence 221 37999999863
No 265
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.44 E-value=1.7e+02 Score=26.35 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=21.2
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
..+|++.|. +.++..+.+.|++. +++|+++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~ 36 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE------GARVVVTD 36 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC------CCEEEEEe
Confidence 458899985 45667777888765 57765553
No 266
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=32.43 E-value=94 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 37 SSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 37 ~~~~~~~~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
-+|.+++....++.||+++|...+++.+|-.|++.. .-+|+..|-+
T Consensus 7 r~s~~~~~~~~k~~rv~LlGArGYTGknlv~Lin~H----Pylevthvss 52 (340)
T KOG4354|consen 7 RVSASSSVKPEKDIRVGLLGARGYTGKNLVRLINNH----PYLEVTHVSS 52 (340)
T ss_pred cccCCcccccCCCceEEEEeccccchhhHHHHhcCC----CceEEEeeeh
Confidence 345556667788999999999999999999999752 2466665544
No 267
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=32.29 E-value=66 Score=33.24 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=47.0
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC-----------CCCCCCCchHHHHHHHcCCcEEEEEEEE-
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS-----------LLPLYRGAAPVQRALQGGAKETGVSLAF- 195 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS-----------lLP~yRG~~pi~wai~~g~~~tGvTih~- 195 (378)
+-++|++.+||++|+++--+.-. =+++..+-=+|.+-.+ ..|.++|..-+-+.|.+.....|+.+..
T Consensus 187 ~r~~l~~~~PDVvVi~~nDH~~~-Ff~d~mP~FaIG~~~~~~p~d~g~G~~~v~~~pG~peLA~~I~~~L~~~GfD~a~~ 265 (444)
T PRK13372 187 SREWAKEHLPDVIILVYNDHATA-FDLEIIPTFAIGTAAEFPPADEGWGPRPVPDVIGHPELAAHIAQSVIQDDFDLTIV 265 (444)
T ss_pred HHHHHHHhCCCEEEEEccchhhh-cCcccCCCeEEEEccccCCCcccCCCCCCCCCCCCHHHHHHHHHHHHhcCCChhhc
Confidence 44788999999999998544431 1222222224444333 3456777888888888776666776654
Q ss_pred ecCCCCCC
Q 048078 196 TVRALDAG 203 (378)
Q Consensus 196 ~~~~~D~G 203 (378)
-+-++|.|
T Consensus 266 ~erglDHG 273 (444)
T PRK13372 266 NEMDVDHG 273 (444)
T ss_pred cCCCCCch
Confidence 35568888
No 268
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=32.20 E-value=13 Score=37.22 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=52.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..||++.|.+..+....+.|.+. +++++.|++.......+ ..+.....+.... |+.. .+..++
T Consensus 271 g~~v~i~~~~~~~~~l~~~L~el------G~~v~~v~~~~~~~~~~------e~~~~~~~~~~~~---v~~~--~~~~~~ 333 (398)
T PF00148_consen 271 GKRVAIYGDPDRALGLARFLEEL------GMEVVAVGCDDKSPEDE------ERLRWLLEESDPE---VIID--PDPEEI 333 (398)
T ss_dssp T-EEEEESSHHHHHHHHHHHHHT------T-EEEEEEESSGGHHHH------HHHHHHHHTTCSE---EEES--CBHHHH
T ss_pred CceEEEEcCchhHHHHHHHHHHc------CCeEEEEEEccCchhHH------HHHHHHhhCCCcE---EEeC--CCHHHH
Confidence 46899988876666666777653 79999998865432100 1223334444223 3322 234678
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhh
Q 048078 129 LSNLRALQPELCITAAYGNILPSKF 153 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~i 153 (378)
.+.+++.+||+++.-++.+.+..+.
T Consensus 334 ~~~l~~~~pdl~ig~~~~~~~a~~~ 358 (398)
T PF00148_consen 334 EELLEELKPDLLIGSSHERYLAKKL 358 (398)
T ss_dssp HHHHHHHT-SEEEESHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEechhhHHHHHHh
Confidence 8899999999999877655554443
No 269
>PRK00865 glutamate racemase; Provisional
Probab=32.12 E-value=3.6e+02 Score=25.48 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=57.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
...|++|=||--+.++|+.|.+.. ++.+++.+--+..-|.|-+. ...+.+++ .+.
T Consensus 5 ~~~IgvfDSGiGGLtvl~~i~~~l----p~~~~iY~~D~~~~PYG~ks---~~~i~~~~------------------~~~ 59 (261)
T PRK00865 5 NAPIGVFDSGVGGLTVLREIRRLL----PDEHIIYVGDTARFPYGEKS---EEEIRERT------------------LEI 59 (261)
T ss_pred CCeEEEEECCccHHHHHHHHHHHC----CCCCEEEEecCCCCCCCCCC---HHHHHHHH------------------HHH
Confidence 347999999988999999999864 24556665544444443211 11111111 234
Q ss_pred HHHHHhcCCcEEEEecCCCc--CChhhhcCCCCceEEEccCC
Q 048078 129 LSNLRALQPELCITAAYGNI--LPSKFLNIPPMGTVNIHPSL 168 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~i--lp~~il~~~~~g~iNiHpSl 168 (378)
.+.|++.++|.+|++.+.-- .-+.+-+..+..+|++-|+.
T Consensus 60 ~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvigi~~a~ 101 (261)
T PRK00865 60 VEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVGIVPAI 101 (261)
T ss_pred HHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEeeHHHH
Confidence 56777889999999988521 12334444455567665543
No 270
>PRK04148 hypothetical protein; Provisional
Probab=32.03 E-value=2.7e+02 Score=23.89 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCce--ecCCCC---
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADL--IFTPER--- 122 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~--v~~~~~--- 122 (378)
+.+||+.+|.| |+..+.+.|.+. +++|+++=.++. ..+.|++.++.+.. ++.|+-
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~~~-------------aV~~a~~~~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKES------GFDVIVIDINEK-------------AVEKAKKLGLNAFVDDLFNPNLEIY 75 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHC------CCEEEEEECCHH-------------HHHHHHHhCCeEEECcCCCCCHHHH
Confidence 35799999999 666666667653 688877744332 35677788877321 122210
Q ss_pred --------CC-c----HHHHHHHHhcCCcEEEEecCCC
Q 048078 123 --------AG-E----DAFLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 123 --------~~-~----~~~~~~l~~~~~Dliv~~~~~~ 147 (378)
+. . ..+++.-++.++|++|.--.+-
T Consensus 76 ~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 76 KNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred hcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 00 1 2334555677888888654443
No 271
>PRK08655 prephenate dehydrogenase; Provisional
Probab=32.03 E-value=1.5e+02 Score=30.52 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=18.4
Q ss_pred ceEEEEe-cCcchHHHHHHHHHc
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~ 71 (378)
|||+|+| ++.++....+.|.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~ 23 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK 23 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC
Confidence 6899998 798888888888764
No 272
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=31.94 E-value=1.4e+02 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=22.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAA 83 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~ 83 (378)
|||+|+|.+.++......|.+. +++|.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~ 28 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVG 28 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEE
Confidence 6899999999988888888875 577643
No 273
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=31.87 E-value=2.3e+02 Score=24.28 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=43.7
Q ss_pred CceEEEEecCcchHH-HHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGSPQVSVN-VLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~-~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
++||+|+=+++..-+ .-++|.+.... .+++|.--=|.. . -|..+ ..-..+.++++||+... ..+..+.+..
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~--~~~~v~SAGt~~--~--~g~~~-~~~a~~vl~e~Gid~~~-~~~k~i~~~~ 73 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAP--DNVEVDSAGTGG--H--PGEPP-DPRAVEVLAEHGIDISG-HRSKQLTEED 73 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhcc--CCeEEECCccCC--C--CCCCC-CHHHHHHHHHcCCCcCC-ccCccCchhh
Confidence 679999888775443 33556554211 234432111100 0 11112 23456677799999442 3344444332
Q ss_pred HHHHHHhcCCcEEEEecCC
Q 048078 128 FLSNLRALQPELCITAAYG 146 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~ 146 (378)
+ ..+|+||.+.-.
T Consensus 74 ~------~~~DlIitmd~~ 86 (139)
T COG0394 74 F------DEFDLIITMDES 86 (139)
T ss_pred h------hhCCEEEEeChH
Confidence 2 479999998743
No 274
>PHA00771 head assembly protein
Probab=31.85 E-value=66 Score=27.50 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=37.0
Q ss_pred eEEEccCCCCCCCCchH----HHHHHHcCCcEEEEEEEEecCCCCCCCeeEE
Q 048078 161 TVNIHPSLLPLYRGAAP----VQRALQGGAKETGVSLAFTVRALDAGPVIAR 208 (378)
Q Consensus 161 ~iNiHpSlLP~yRG~~p----i~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q 208 (378)
.+-.|+=.+|.+||.+. .+|-.+-.....-+++-++.+++--|.++.|
T Consensus 62 ~~ecHa~y~P~fRG~ya~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~ 113 (151)
T PHA00771 62 TFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCA 113 (151)
T ss_pred EEEEEeeeCccccchhHHHHHHHHHHHhcCCceeEEEEecccccccchhhhh
Confidence 89999999999999754 4454444445666777788999999998876
No 275
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=31.69 E-value=2.8e+02 Score=26.96 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=41.0
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHH-HHCCCCCceecCCCCCCc-
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYA-LDRGFPADLIFTPERAGE- 125 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A-~~~gIp~~~v~~~~~~~~- 125 (378)
.+||++.|. +-.+..+.+.|++. +++|+++.-.+... ....... ....+. ... .++.+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~------G~~V~~~~r~~~~~---------~~~~~~~~~~~~~~---~~~-~Dl~~~ 64 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLEL------GAEVYGYSLDPPTS---------PNLFELLNLAKKIE---DHF-GDIRDA 64 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHC------CCEEEEEeCCCccc---------hhHHHHHhhcCCce---EEE-ccCCCH
Confidence 368999995 44555666778764 57776543221110 0111111 111232 222 23333
Q ss_pred HHHHHHHHhcCCcEEEEecC
Q 048078 126 DAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~ 145 (378)
+++.+.+++.++|++|-.+.
T Consensus 65 ~~~~~~~~~~~~d~vih~A~ 84 (349)
T TIGR02622 65 AKLRKAIAEFKPEIVFHLAA 84 (349)
T ss_pred HHHHHHHhhcCCCEEEECCc
Confidence 44556677778999887765
No 276
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=31.35 E-value=1.8e+02 Score=27.65 Aligned_cols=75 Identities=24% Similarity=0.182 Sum_probs=42.4
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC--CCCCCcHHH
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT--PERAGEDAF 128 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~--~~~~~~~~~ 128 (378)
+-+|+.++.-..+.+.... ....+..-|.+.+ ...+.|.+.|+|...+.. +.. +.+.=
T Consensus 130 ~~i~lttG~k~l~~f~~~~-------~~~~~~~RvLP~~------------~~l~~~~~~G~~~~~iia~~gPf-s~e~n 189 (256)
T TIGR00715 130 KRVFLTAGASWLSHFSLSQ-------DEAVVFVRVLPYP------------QALAQALKLGFPSDRIIAMRGPF-SEELE 189 (256)
T ss_pred CcEEEecCcchHHHHhhcc-------CCceEEEEECCCc------------hhhHHHHHcCCChhcEEEEeCCC-CHHHH
Confidence 4567777643444443321 1344555554332 135689999999554432 221 12223
Q ss_pred HHHHHhcCCcEEEEecC
Q 048078 129 LSNLRALQPELCITAAY 145 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~ 145 (378)
.+.++++++|++|+=-=
T Consensus 190 ~al~~~~~i~~lVtK~S 206 (256)
T TIGR00715 190 KALLREYRIDAVVTKAS 206 (256)
T ss_pred HHHHHHcCCCEEEEcCC
Confidence 57789999999998443
No 277
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=31.34 E-value=4.2e+02 Score=24.85 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEec
Q 048078 102 PVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAA 144 (378)
Q Consensus 102 ~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~ 144 (378)
.+.+.+++.+++..+.+. .....+++.+.++ +.|++++.+
T Consensus 224 ~~~~~~~~~~~~~~v~~~-g~~~~~~l~~~~~--~adi~l~~s 263 (355)
T cd03799 224 ELEALIAELGLEDRVTLL-GAKSQEEVRELLR--AADLFVLPS 263 (355)
T ss_pred HHHHHHHHcCCCCeEEEC-CcCChHHHHHHHH--hCCEEEecc
Confidence 567788888776442332 3334556666664 577776543
No 278
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.08 E-value=2.1e+02 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=20.4
Q ss_pred CceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.++|++.| |+.++..+.+.|++. +++++.++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~ 37 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARA------GADVVVHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC------CCeEEEEe
Confidence 35899998 455666677778764 56764433
No 279
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=30.95 E-value=1.1e+02 Score=29.55 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=44.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
.-+|++.|.+.++....+.+... +.+++.+++..+. -.+++++.|... ++.......+++
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~------------~~~~~~~~Ga~~--~i~~~~~~~~~~ 220 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSE------------KLALAKSLGAMQ--TFNSREMSAPQI 220 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHH------------HHHHHHHcCCce--EecCcccCHHHH
Confidence 34788888765544444433322 4554434433221 245677777642 333332223344
Q ss_pred HHHHHhcCCc-EEE-EecCCCcCChhhhcCCCCceEEE
Q 048078 129 LSNLRALQPE-LCI-TAAYGNILPSKFLNIPPMGTVNI 164 (378)
Q Consensus 129 ~~~l~~~~~D-liv-~~~~~~ilp~~il~~~~~g~iNi 164 (378)
.+.+....+| +++ ++|....+...+=...+.|.+.+
T Consensus 221 ~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 221 QSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred HHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 4444445677 544 33322344333222234454443
No 280
>PLN00016 RNA-binding protein; Provisional
Probab=30.92 E-value=1.2e+02 Score=30.02 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCCceEEEE----e-cCcchHHHHHHHHHccCCCCCCceEEEEEcC
Q 048078 46 VSRKKPLVFL----G-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 46 ~~~~~rIvf~----G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
..+++||+++ | ++.++..+.+.|++. +++|.++.-.
T Consensus 49 ~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~------G~~V~~l~R~ 89 (378)
T PLN00016 49 AVEKKKVLIVNTNSGGHAFIGFYLAKELVKA------GHEVTLFTRG 89 (378)
T ss_pred ccccceEEEEeccCCCceeEhHHHHHHHHHC------CCEEEEEecC
Confidence 4556799999 6 566777788888875 6888776643
No 281
>PRK08507 prephenate dehydrogenase; Validated
Probab=30.75 E-value=1.4e+02 Score=28.34 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=19.5
Q ss_pred ceEEEEecCcchHHHHHHHHHc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
|||+|+|.+.++......|.+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~ 22 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK 22 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc
Confidence 5899999999999998998875
No 282
>PRK05586 biotin carboxylase; Validated
Probab=30.74 E-value=62 Score=33.16 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=28.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
.||+++|.++.+..+++++.+. ++++++|.+.++
T Consensus 3 kkvli~g~G~~~~~~~~aa~~l------G~~~v~v~~~~d 36 (447)
T PRK05586 3 KKILIANRGEIAVRIIRACREM------GIETVAVYSEAD 36 (447)
T ss_pred ceEEEECCcHHHHHHHHHHHHc------CCcEEEEcChHh
Confidence 5999999999999999998774 788888877644
No 283
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=30.68 E-value=1.7e+02 Score=25.89 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=17.9
Q ss_pred CCceEEEEe-cCcchHHHHHHHHHc
Q 048078 48 RKKPLVFLG-SPQVSVNVLDALFNA 71 (378)
Q Consensus 48 ~~~rIvf~G-s~~~a~~~L~~L~~~ 71 (378)
+..+++++| ++..+..+.+.|.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~ 51 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLARE 51 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC
Confidence 357899999 587777777777764
No 284
>PRK07326 short chain dehydrogenase; Provisional
Probab=30.49 E-value=2e+02 Score=25.71 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=21.9
Q ss_pred CceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
..+|++.| ++.++..+.+.|++. +++|+++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~------g~~V~~~~ 37 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE------GYKVAITA 37 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC------CCEEEEee
Confidence 36788888 566777788888764 57766554
No 285
>PRK09291 short chain dehydrogenase; Provisional
Probab=30.45 E-value=1.8e+02 Score=26.44 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=42.8
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
.+|++.|. +.++..+.+.|++. +++++++.-+++. ...+.+.+.+.+..+. +.. -++.+.+-
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~------G~~v~~~~r~~~~---------~~~~~~~~~~~~~~~~-~~~-~D~~~~~~ 65 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARK------GHNVIAGVQIAPQ---------VTALRAEAARRGLALR-VEK-LDLTDAID 65 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHH---------HHHHHHHHHhcCCcce-EEE-eeCCCHHH
Confidence 36888885 45666777888764 5777655432211 1233444455555533 222 23444444
Q ss_pred HHHHHhcCCcEEEEecC
Q 048078 129 LSNLRALQPELCITAAY 145 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~ 145 (378)
++......+|++|....
T Consensus 66 ~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 66 RAQAAEWDVDVLLNNAG 82 (257)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 44333457898887653
No 286
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=30.42 E-value=49 Score=32.06 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=34.3
Q ss_pred HHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCCh
Q 048078 106 YALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPS 151 (378)
Q Consensus 106 ~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~ 151 (378)
.=++.|||.+-+.-+++.-.+.+.+.|++.+||++|+-|.--++..
T Consensus 124 ~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~ 169 (287)
T PF05582_consen 124 VYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKN 169 (287)
T ss_pred HHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcC
Confidence 3457899966555555555567789999999999999998666543
No 287
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=30.38 E-value=4.5e+02 Score=24.47 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=53.0
Q ss_pred CCCCceEEEEecC--c---chHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCcc-----CChHHHHHHHHCCCCCc
Q 048078 46 VSRKKPLVFLGSP--Q---VSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKV-----LPSPVAQYALDRGFPAD 115 (378)
Q Consensus 46 ~~~~~rIvf~Gs~--~---~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~-----~~~~v~~~A~~~gIp~~ 115 (378)
...+++|++++-. + +.+.+|..+.+. +++|..|++......+.+... ......+.|+.+|+...
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~------G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~~ 80 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAAR------GVEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGVRET 80 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHC------CCeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCCCcc
Confidence 3446777777632 2 345666777664 677766654433332333221 33456777888999633
Q ss_pred eecCCC----CCCc----HHHHHHHHhcCCcEEEEecC
Q 048078 116 LIFTPE----RAGE----DAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 116 ~v~~~~----~~~~----~~~~~~l~~~~~Dliv~~~~ 145 (378)
.++... .... ..+.+.++..+||++++...
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~ 118 (237)
T COG2120 81 IFLGFPDTGADADPEEITGALVAIIRRLRPDVVFTPYP 118 (237)
T ss_pred eecCCCccccccChHHHHHHHHHHHHHhCCCEEEecCC
Confidence 233222 1222 23556778899998877554
No 288
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=30.06 E-value=1.7e+02 Score=29.36 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=51.0
Q ss_pred EEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCC--CCCc---HH
Q 048078 53 VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPE--RAGE---DA 127 (378)
Q Consensus 53 vf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~--~~~~---~~ 127 (378)
++||.+ +...|-.+++. .+.+-++|||.+.-. ..| ....+.+..++.||.+. +|.-. +... ++
T Consensus 12 i~~G~g--~~~~l~~~~~~-----~g~~~~livt~~~~~-~~g---~~~~v~~~L~~~~i~~~-~f~~v~~np~~~~v~~ 79 (383)
T PRK09860 12 NVIGAD--SLTDAMNMMAD-----YGFTRTLIVTDNMLT-KLG---MAGDVQKALEERNIFSV-IYDGTQPNPTTENVAA 79 (383)
T ss_pred EEECcC--HHHHHHHHHHh-----cCCCEEEEEcCcchh-hCc---cHHHHHHHHHHcCCeEE-EeCCCCCCcCHHHHHH
Confidence 457877 46666555553 244567788864211 111 23467788888999854 33211 1111 34
Q ss_pred HHHHHHhcCCcEEEEecCCCcC
Q 048078 128 FLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~il 149 (378)
..+..++.++|++|.+|=|..|
T Consensus 80 ~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 80 GLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred HHHHHHHcCCCEEEEeCCchHH
Confidence 5567788999999999977666
No 289
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=30.03 E-value=1.3e+02 Score=29.09 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=25.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.+||+++|.+.++..+.+.|.... ...+++++|.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~ 35 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADA---AQPCQLAALT 35 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCC---CCceEEEEEe
Confidence 589999999999888888875431 1247888874
No 290
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=29.95 E-value=2.2e+02 Score=33.00 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCceEEEEecCcc-----------hHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 48 RKKPLVFLGSPQV-----------SVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 48 ~~~rIvf~Gs~~~-----------a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
.++||+++|++.. ++.++++|.+. +++++.|=++|..
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~------G~~vI~vn~npet 601 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKE------GYETIMINNNPET 601 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHc------CCEEEEEeCCccc
Confidence 6889999999753 33456666654 7888766666643
No 291
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=29.72 E-value=2.3e+02 Score=30.01 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=58.2
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCC---
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPER--- 122 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~--- 122 (378)
...+-|++++|.+..+......+... +.. +.|+...+ ...+.++++|..+..+. ..+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~l------GA~-V~v~d~~~------------~rle~a~~lGa~~v~v~-~~e~g~ 220 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSL------GAI-VRAFDTRP------------EVKEQVQSMGAEFLELD-FKEEGG 220 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC------CCE-EEEEeCCH------------HHHHHHHHcCCeEEecc-cccccc
Confidence 34468999999998777776666553 444 33443322 24678888887632111 110
Q ss_pred -------CCcHHHH----HHHHh--cCCcEEEEec------CCCcCChhhhcCCCCceEE
Q 048078 123 -------AGEDAFL----SNLRA--LQPELCITAA------YGNILPSKFLNIPPMGTVN 163 (378)
Q Consensus 123 -------~~~~~~~----~~l~~--~~~Dliv~~~------~~~ilp~~il~~~~~g~iN 163 (378)
.-++++. +.+.+ .++|++|... ..+++.++.++..+.|.+=
T Consensus 221 ~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvI 280 (511)
T TIGR00561 221 SGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVI 280 (511)
T ss_pred ccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEE
Confidence 0012222 22332 4699999887 6678888898887766443
No 292
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=29.11 E-value=2.7e+02 Score=28.91 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=27.1
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
..+++++|+++.+....+.|.+. +..++++++++.+.
T Consensus 146 ~rrvLIIGaG~~a~~l~~~L~~~---~~~g~~vVGfIDd~ 182 (476)
T PRK15204 146 KKKTIILGSGQNARGAYSALQSE---EMMGFDVIAFFDTD 182 (476)
T ss_pred CCeEEEEECCHHHHHHHHHHHhC---ccCCcEEEEEEcCC
Confidence 46899999998777777777543 22468999998643
No 293
>PRK06182 short chain dehydrogenase; Validated
Probab=29.08 E-value=2.2e+02 Score=26.36 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=20.5
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
..+|++.|. +.++..+.+.|++. +++|+++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~------G~~V~~~~ 34 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ------GYTVYGAA 34 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC------CCEEEEEe
Confidence 357888885 44666666777764 57776553
No 294
>PLN02427 UDP-apiose/xylose synthase
Probab=29.05 E-value=1.6e+02 Score=29.05 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 48 RKKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 48 ~~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
++|||++.|. +-++..+.+.|++.. +++|+++.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~-----g~~V~~l~ 46 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET-----PHKVLALD 46 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC-----CCEEEEEe
Confidence 4689999995 555555667888741 36777664
No 295
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=29.05 E-value=2.3e+02 Score=28.85 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCcEEEEecC
Q 048078 127 AFLSNLRALQPELCITAAY 145 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~ 145 (378)
.+...+++.+||++.+...
T Consensus 135 ~l~~~i~~~kpDiIh~~~~ 153 (465)
T PLN02871 135 RIISEVARFKPDLIHASSP 153 (465)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 5667888899999987543
No 296
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=28.97 E-value=1.8e+02 Score=28.16 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=39.9
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc-HH
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE-DA 127 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~-~~ 127 (378)
+||++.|. +-++..+.+.|++. +++++.++..... .+. ...+.......++. +... ++.+ +.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~------g~~~v~~~~~~~~-~~~-----~~~~~~~~~~~~~~---~~~~-Dl~d~~~ 65 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINE------TSDAVVVVDKLTY-AGN-----LMSLAPVAQSERFA---FEKV-DICDRAE 65 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHc------CCCEEEEEecCcc-ccc-----hhhhhhcccCCceE---EEEC-CCcChHH
Confidence 48899985 44666667778774 4555544432211 110 00111111111233 2222 3333 45
Q ss_pred HHHHHHhcCCcEEEEecC
Q 048078 128 FLSNLRALQPELCITAAY 145 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~ 145 (378)
+.+.+++.++|++|-++.
T Consensus 66 ~~~~~~~~~~D~Vih~A~ 83 (355)
T PRK10217 66 LARVFTEHQPDCVMHLAA 83 (355)
T ss_pred HHHHHhhcCCCEEEECCc
Confidence 556676667999888774
No 297
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=28.87 E-value=2e+02 Score=27.30 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=47.8
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCC-CcHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERA-GEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~-~~~~ 127 (378)
.++|++||...=+....+.|.+. ++.+..-++.... . ....+++ +.. ... +.++
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~------g~~v~~Svat~~g--------------~-~~~~~~~---v~~-G~l~~~~~ 56 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAA------GVDIVLSLAGRTG--------------G-PADLPGP---VRV-GGFGGAEG 56 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhC------CCeEEEEEccCCC--------------C-cccCCce---EEE-CCCCCHHH
Confidence 46788877554466666777654 4655543332221 0 2234555 332 344 5677
Q ss_pred HHHHHHhcCCcEEEEecC--CCcCChhhhc
Q 048078 128 FLSNLRALQPELCITAAY--GNILPSKFLN 155 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~--~~ilp~~il~ 155 (378)
+.+.+++.+++++|=+.. -..+.+...+
T Consensus 57 l~~~l~~~~i~~VIDATHPfA~~is~~a~~ 86 (248)
T PRK08057 57 LAAYLREEGIDLVIDATHPYAAQISANAAA 86 (248)
T ss_pred HHHHHHHCCCCEEEECCCccHHHHHHHHHH
Confidence 888888888888887763 3444444443
No 298
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=28.62 E-value=2.7e+02 Score=28.41 Aligned_cols=81 Identities=12% Similarity=0.121 Sum_probs=47.0
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
....+|+++|.|..+....+.|... ++.-+.|+ ++.. ....++|++.|.. .... +
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~-~rs~----------~ra~~la~~~g~~---~i~~-----~ 232 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRK------GVGKILIA-NRTY----------ERAEDLAKELGGE---AVKF-----E 232 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHC------CCCEEEEE-eCCH----------HHHHHHHHHcCCe---EeeH-----H
Confidence 3457999999999998898888764 32223333 3321 1345678777643 2111 2
Q ss_pred HHHHHHHhcCCcEEEEec--CCCcCChhhh
Q 048078 127 AFLSNLRALQPELCITAA--YGNILPSKFL 154 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~--~~~ilp~~il 154 (378)
++.+.+. ++|++|++. -..++..+.+
T Consensus 233 ~l~~~l~--~aDvVi~aT~s~~~ii~~e~l 260 (417)
T TIGR01035 233 DLEEYLA--EADIVISSTGAPHPIVSKEDV 260 (417)
T ss_pred HHHHHHh--hCCEEEECCCCCCceEcHHHH
Confidence 3334443 689999874 2334444444
No 299
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=28.62 E-value=1.8e+02 Score=29.52 Aligned_cols=85 Identities=9% Similarity=0.083 Sum_probs=50.5
Q ss_pred EEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc---HH
Q 048078 53 VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE---DA 127 (378)
Q Consensus 53 vf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~---~~ 127 (378)
++||.+ +..-|-.+++.. +..-+.|||.+.-.+ .+ ....+.+..++.|+.+. ++. .. +... .+
T Consensus 4 i~fG~g--~~~~l~~~l~~~-----g~~~vlivt~~~~~~-~g---~~~~v~~~L~~~gi~~~-~f~~v~~~p~~~~v~~ 71 (414)
T cd08190 4 IRFGPG--VTAEVGMDLKNL-----GARRVCLVTDPNLAQ-LP---PVKVVLDSLEAAGINFE-VYDDVRVEPTDESFKD 71 (414)
T ss_pred EEECcC--HHHHHHHHHHHc-----CCCeEEEEECcchhh-cc---hHHHHHHHHHHcCCcEE-EeCCCCCCcCHHHHHH
Confidence 456887 455555555532 335577888754211 11 12456777778899865 332 11 1112 23
Q ss_pred HHHHHHhcCCcEEEEecCCCcC
Q 048078 128 FLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~il 149 (378)
..+..++.++|++|.+|=|..+
T Consensus 72 ~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 72 AIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred HHHHHHhcCCCEEEEeCCccHH
Confidence 4466778899999999988776
No 300
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=28.48 E-value=90 Score=29.85 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccC-------CCC--CCCCchHHHHHHHcCCcEEEEEEEEec
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPS-------LLP--LYRGAAPVQRALQGGAKETGVSLAFTV 197 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpS-------lLP--~yRG~~pi~wai~~g~~~tGvTih~~~ 197 (378)
++-+.+++.+||.+|+++=.+..- -..+..+.-+|+.... -.| .|+|...+-+.|...-...|+.+...+
T Consensus 33 ~~~~~l~~~~Pd~ivvis~dH~~~-~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~~gd~~LA~~i~~~l~~~g~~~~~~~ 111 (268)
T cd07367 33 EIGRRVRESRPDVLVVISSDHLFN-INLSLQPPFVVGTADSYTPFGDMDIPRELFPGHREFARAFVRQAAEDGFDLAQAE 111 (268)
T ss_pred HHHHHHHHcCCCEEEEEeCchhhh-cccccCCceEEeeccccccCCcCCCCcccCCCCHHHHHHHHHHHHHcCCCeeeec
Confidence 344567778999999988534211 1111111113333221 124 577888888888876666677666543
Q ss_pred -CCCCCCCee
Q 048078 198 -RALDAGPVI 206 (378)
Q Consensus 198 -~~~D~G~Ii 206 (378)
-++|.|-.+
T Consensus 112 ~~~lDHG~~v 121 (268)
T cd07367 112 ELRPDHGVMV 121 (268)
T ss_pred CccCCcchhc
Confidence 358887543
No 301
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=28.41 E-value=2e+02 Score=29.11 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=16.9
Q ss_pred ceEEEEecCcchHHHHHHHHHc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
|||+++|++.......++|.+.
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~ 22 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQS 22 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 7999999996556666777664
No 302
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=28.23 E-value=25 Score=26.69 Aligned_cols=32 Identities=6% Similarity=-0.003 Sum_probs=23.9
Q ss_pred CCccccCCcceeeccccccccccceeeEeeec
Q 048078 1 SNFFSLHSGLVEDEKTKEMNSSLMIRRFFCFK 32 (378)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (378)
++|+..|++||+|-.---+...|+||-.|..+
T Consensus 19 s~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~ 50 (77)
T cd04893 19 TRAVSESGCNILDSRMAILGTEFALTMLVEGS 50 (77)
T ss_pred HHHHHHcCCCEEEceeeEEcCEEEEEEEEEec
Confidence 46788999999993333377788888888763
No 303
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=28.22 E-value=1.8e+02 Score=26.91 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=78.0
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..+|+++|.|+.+..=.+.|++. +.+| -||++... ..+..++++.+|. +.. +. .+.+
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll~~------ga~v-~Vvs~~~~----------~el~~~~~~~~i~---~~~-~~-~~~~- 68 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLLKA------GADV-TVVSPEFE----------PELKALIEEGKIK---WIE-RE-FDAE- 68 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCEE-EEEcCCcc----------HHHHHHHHhcCcc---hhh-cc-cChh-
Confidence 67999999998888878888875 3444 45554321 4688999999988 443 22 2222
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCC--ceEEEccCCCCCCCCchHHHHHHHcCCcEEEEEEEEecCCCCCCCee
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPM--GTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVRALDAGPVI 206 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~--g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvTih~~~~~~D~G~Ii 206 (378)
.+ ..++++|.+.=..-+.+.+....+. ..+|. -.....+=+.+..-+|.|+|.
T Consensus 69 --~~--~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv---------------------~D~p~~~~f~~Pa~~~r~~l~ 123 (210)
T COG1648 69 --DL--DDAFLVIAATDDEELNERIAKAARERRILVNV---------------------VDDPELCDFIFPAIVDRGPLQ 123 (210)
T ss_pred --hh--cCceEEEEeCCCHHHHHHHHHHHHHhCCceec---------------------cCCcccCceecceeeccCCeE
Confidence 12 2388888777666677666654332 12222 122222445566777888843
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 048078 207 AREKMEVDDQIKAPELLVLLFSEGSELL 234 (378)
Q Consensus 207 ~Q~~~~I~~~dt~~~L~~kl~~~~~~ll 234 (378)
+.|..+-...-|...+.+.-..+|
T Consensus 124 ----iaIsT~G~sP~la~~ir~~Ie~~l 147 (210)
T COG1648 124 ----IAISTGGKSPVLARLLREKIEALL 147 (210)
T ss_pred ----EEEECCCCChHHHHHHHHHHHHHc
Confidence 445544444445444444443333
No 304
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=28.16 E-value=3.3e+02 Score=25.42 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=24.6
Q ss_pred HHHHHHhcCCcEEEEecCCCcCChhhhcCCCCc-eEEEccCCCCC
Q 048078 128 FLSNLRALQPELCITAAYGNILPSKFLNIPPMG-TVNIHPSLLPL 171 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g-~iNiHpSlLP~ 171 (378)
+.+.++..++|++.+.++...+- .....+.. +..+|....+.
T Consensus 79 ~~~~~~~~~~Divh~~~~~~~~~--~~~~~~~~~v~~~h~~~~~~ 121 (335)
T cd03802 79 AERALAAGDFDIVHNHSLHLPLP--FARPLPVPVVTTLHGPPDPE 121 (335)
T ss_pred HHHHHhcCCCCEEEecCcccchh--hhcccCCCEEEEecCCCCcc
Confidence 44667788999998877644432 11222222 56777766543
No 305
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=27.92 E-value=1.8e+02 Score=27.85 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=39.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHH-CCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD-RGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~-~gIp~~~v~~~~~~~~~~ 127 (378)
.|||++.|.+.-. ..++.|.++. .+++|+++=+++.. +...+|.+ +-+| ... +...-+.
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~----~g~~vi~~d~~~~~-----------~~~~~~d~~~~~p---~~~-~~~~~~~ 60 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSL----LKGRVIGADISELA-----------PALYFADKFYVVP---KVT-DPNYIDR 60 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhc----cCCEEEEECCCCcc-----------hhhHhccCcEecC---CCC-ChhHHHH
Confidence 3799999987543 6677777652 14776655444322 22233321 1112 000 0001245
Q ss_pred HHHHHHhcCCcEEEEe
Q 048078 128 FLSNLRALQPELCITA 143 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~ 143 (378)
+.+.+++.++|+++..
T Consensus 61 l~~~~~~~~id~ii~~ 76 (326)
T PRK12767 61 LLDICKKEKIDLLIPL 76 (326)
T ss_pred HHHHHHHhCCCEEEEC
Confidence 5566777888887753
No 306
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=27.91 E-value=2.1e+02 Score=33.10 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCCCceEEEEecCcc-----------hHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 46 VSRKKPLVFLGSPQV-----------SVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~-----------a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
...+.||+++|++.. ++.++++|.+. +++++.|=++|.
T Consensus 551 ~~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~------G~~vi~v~~npe 599 (1066)
T PRK05294 551 PSDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREA------GYETIMVNCNPE 599 (1066)
T ss_pred cCCCceEEEECccccccccccccchhHHHHHHHHHHC------CCEEEEEeCCcc
Confidence 345789999999863 24556666653 788876655554
No 307
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=27.65 E-value=1.7e+02 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=21.6
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
|||++.|. +-++..+.+.|++.. +++|.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~-----~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT-----DWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC-----CCeEEEEe
Confidence 68999996 555555667777642 47887764
No 308
>PLN02928 oxidoreductase family protein
Probab=27.58 E-value=6.1e+02 Score=25.10 Aligned_cols=166 Identities=13% Similarity=0.190 Sum_probs=90.5
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCce---ecCCCCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADL---IFTPERAG 124 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~---v~~~~~~~ 124 (378)
...+|+++|.|.++..+.+.|... +.+|.++ ++.... ......++|... +.. ....
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~af------G~~V~~~--dr~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 216 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPF------GVKLLAT--RRSWTS------------EPEDGLLIPNGDVDDLVD-EKGG 216 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhC------CCEEEEE--CCCCCh------------hhhhhhcccccccccccc-ccCc
Confidence 356999999999988888877643 5776543 332110 111111122100 000 0000
Q ss_pred cHHHHHHHHhcCCcEEEEec-----CCCcCChhhhcCCCCceEEEccCCCCCCCCc----hHHHHHHHcCCc-EEEEEEE
Q 048078 125 EDAFLSNLRALQPELCITAA-----YGNILPSKFLNIPPMGTVNIHPSLLPLYRGA----APVQRALQGGAK-ETGVSLA 194 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~-----~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~----~pi~wai~~g~~-~tGvTih 194 (378)
..++.+.++ +.|++++.- ..++|.++.++..+.|.+=+--| ||. ..+..|+.+|.- -.|.-++
T Consensus 217 ~~~L~ell~--~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva-----RG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 217 HEDIYEFAG--EADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA-----RGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred ccCHHHHHh--hCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC-----CccccCHHHHHHHHHcCCeeEEEEccC
Confidence 112334442 479888763 35789999999888775444444 775 678888888853 2455555
Q ss_pred EecCCCCCCCeeEEEEEEeCCCCC--HHHHHHHHHHHHHHHHHHHHHHhHcCC
Q 048078 195 FTVRALDAGPVIAREKMEVDDQIK--APELLVLLFSEGSELLIRELPSILDGS 245 (378)
Q Consensus 195 ~~~~~~D~G~Ii~Q~~~~I~~~dt--~~~L~~kl~~~~~~ll~~~l~~l~~g~ 245 (378)
....-...-+++....+-+.|.-. ..+...++ .+++.+.+..+..|.
T Consensus 290 ~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~----~~~~~~nl~~~~~g~ 338 (347)
T PLN02928 290 WSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSM----GKIVGDAALQLHAGR 338 (347)
T ss_pred CCCCCCCCChhhcCCCEEECCcCCCChHHHHHHH----HHHHHHHHHHHHCCC
Confidence 544322233555445565655532 22233343 444556666666665
No 309
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=27.55 E-value=79 Score=29.87 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=93.5
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEE------EcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC--
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAI------VTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-- 119 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~V------vt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-- 119 (378)
+..|+++=|.+..+..+.+.|.+. +..|++| |.+|+. +....+.++.++.|..+. -+.
T Consensus 31 ~g~~v~IqGfG~VG~~~a~~l~~~------Ga~vv~vsD~~G~i~~~~G-------ld~~~l~~~~~~~~~~v~-~~~~~ 96 (244)
T PF00208_consen 31 EGKRVAIQGFGNVGSHAARFLAEL------GAKVVAVSDSSGAIYDPDG-------LDVEELLRIKEERGSRVD-DYPLE 96 (244)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHT------TEEEEEEEESSEEEEETTE-------EHHHHHHHHHHHHSSHST-TGTHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc------CCEEEEEecCceEEEcCCC-------chHHHHHHHHHHhCCccc-ccccc
Confidence 358999999999999999999885 6778777 333332 233456666667776311 111
Q ss_pred -C---CCCCcH-HHHHHHHhcCCcEEEEecCCCcCChhhhc-CCC--CceEEEccCCCCCCCCchHHHHHHHcCCcEEEE
Q 048078 120 -P---ERAGED-AFLSNLRALQPELCITAAYGNILPSKFLN-IPP--MGTVNIHPSLLPLYRGAAPVQRALQGGAKETGV 191 (378)
Q Consensus 120 -~---~~~~~~-~~~~~l~~~~~Dliv~~~~~~ilp~~il~-~~~--~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGv 191 (378)
+ +.+.++ ++ -..++|+++-++.+..|..+-.. ..+ -+ +-+=.+-.|-- |=-..++... |+
T Consensus 97 ~~~~~~~~~~~~~i----l~~~~DiliP~A~~~~I~~~~~~~~i~~~ak-iIvegAN~p~t----~~a~~~L~~r---GI 164 (244)
T PF00208_consen 97 SPDGAEYIPNDDEI----LSVDCDILIPCALGNVINEDNAPSLIKSGAK-IIVEGANGPLT----PEADEILRER---GI 164 (244)
T ss_dssp CSSTSEEECHHCHG----GTSSSSEEEEESSSTSBSCHHHCHCHHTT-S-EEEESSSSSBS----HHHHHHHHHT---T-
T ss_pred cccceeEecccccc----ccccccEEEEcCCCCeeCHHHHHHHHhccCc-EEEeCcchhcc----HHHHHHHHHC---CC
Confidence 1 112221 33 35699999999999999998877 544 22 23334444432 2122233322 22
Q ss_pred EEEEecCCCCCCCeeEEE--EE--EeCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 048078 192 SLAFTVRALDAGPVIARE--KM--EVDDQIKAPELLVLLFSEGSELLIRELPSIL 242 (378)
Q Consensus 192 Tih~~~~~~D~G~Ii~Q~--~~--~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~ 242 (378)
++. -|--.-+|.++... .. .-....+.+++.+++.+...+.+.++++.-.
T Consensus 165 ~vi-PD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~ 218 (244)
T PF00208_consen 165 LVI-PDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAE 218 (244)
T ss_dssp EEE--HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-cchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 12223445554211 00 1112357788888887777676666665543
No 310
>PRK07574 formate dehydrogenase; Provisional
Probab=27.44 E-value=6.6e+02 Score=25.43 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
.-++|+++|.+.++..+.+.|... +++|.+. ++... + .+.+.+.|+. .. .+
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~f------G~~V~~~--dr~~~----------~-~~~~~~~g~~---~~--~~----- 241 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPF------DVKLHYT--DRHRL----------P-EEVEQELGLT---YH--VS----- 241 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCEEEEE--CCCCC----------c-hhhHhhcCce---ec--CC-----
Confidence 356899999999988888887653 5665432 33211 0 1233344543 11 11
Q ss_pred HHHHHHhcCCcEEEEecC-----CCcCChhhhcCCCCceEEEccCCCCCCCCc----hHHHHHHHcCCcE-EEEEEEEec
Q 048078 128 FLSNLRALQPELCITAAY-----GNILPSKFLNIPPMGTVNIHPSLLPLYRGA----APVQRALQGGAKE-TGVSLAFTV 197 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~-----~~ilp~~il~~~~~g~iNiHpSlLP~yRG~----~pi~wai~~g~~~-tGvTih~~~ 197 (378)
+.+.+ ...|++++.-= .++|.+++|+..+.|.+=+=- -||. ..+..|+.+|.-. .|.-|+.-.
T Consensus 242 l~ell--~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~-----aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~E 314 (385)
T PRK07574 242 FDSLV--SVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNT-----ARGKIVDRDAVVRALESGHLAGYAGDVWFPQ 314 (385)
T ss_pred HHHHh--hcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEEC-----CCCchhhHHHHHHHHHhCCccEEEEecCCCC
Confidence 22233 35788877652 467788889888776333222 2774 6777888888532 555555544
Q ss_pred CCCCCCCeeEEEEEEeCCCCC--HHHHHHHHHHHHHHHHHHHHHHhHcCC
Q 048078 198 RALDAGPVIAREKMEVDDQIK--APELLVLLFSEGSELLIRELPSILDGS 245 (378)
Q Consensus 198 ~~~D~G~Ii~Q~~~~I~~~dt--~~~L~~kl~~~~~~ll~~~l~~l~~g~ 245 (378)
.-...-+......+-+.|.-. ..+-..++ .+...+.|..+.+|+
T Consensus 315 Plp~d~pL~~~pNvilTPHiag~T~e~~~~~----~~~~~~ni~~~~~G~ 360 (385)
T PRK07574 315 PAPADHPWRTMPRNGMTPHISGTTLSAQARY----AAGTREILECFFEGR 360 (385)
T ss_pred CCCCCChHHhCCCeEECCccccCcHHHHHHH----HHHHHHHHHHHHcCC
Confidence 333333443333444444332 23333444 344455566666664
No 311
>PRK06392 homoserine dehydrogenase; Provisional
Probab=27.43 E-value=2.4e+02 Score=27.85 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=26.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCC--CCCCceEEEEEc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSS--PDSIFEVAAIVT 86 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~--~~~~~ei~~Vvt 86 (378)
|||+++|.+..+..+++.|.+.... ...+++|++|..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsd 39 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSD 39 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEE
Confidence 6899999999999999988764211 113577888754
No 312
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=27.12 E-value=2.7e+02 Score=27.34 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE 125 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~ 125 (378)
..+++||+=+.++. +--+|++|.+.... ..+|..+=-.+.. -....+++++.|+.-..-++..+..+
T Consensus 133 ~g~pvrIlDIAaG~-GRYvlDal~~~~~~---~~~i~LrDys~~N---------v~~g~~li~~~gL~~i~~f~~~dAfd 199 (311)
T PF12147_consen 133 QGRPVRILDIAAGH-GRYVLDALEKHPER---PDSILLRDYSPIN---------VEKGRALIAERGLEDIARFEQGDAFD 199 (311)
T ss_pred cCCceEEEEeccCC-cHHHHHHHHhCCCC---CceEEEEeCCHHH---------HHHHHHHHHHcCCccceEEEecCCCC
Confidence 45789999988885 56688888765321 2344333222221 12346888999998542233344555
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChh
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSK 152 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~ 152 (378)
.+-++.+ ..+|+++|+.|--.++|.+
T Consensus 200 ~~~l~~l-~p~P~l~iVsGL~ElF~Dn 225 (311)
T PF12147_consen 200 RDSLAAL-DPAPTLAIVSGLYELFPDN 225 (311)
T ss_pred HhHhhcc-CCCCCEEEEecchhhCCcH
Confidence 5444444 5678999999987788773
No 313
>PLN02572 UDP-sulfoquinovose synthase
Probab=27.11 E-value=6.6e+02 Score=25.67 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCceEEEEecCc-chHHHHHHHHHccCCCCCCceEEEE
Q 048078 47 SRKKPLVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 47 ~~~~rIvf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
.+.+||++.|... ++..+.+.|++. +++|+++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~------G~~V~~~ 77 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKR------GYEVAIV 77 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHC------CCeEEEE
Confidence 4457899999644 555566778764 5777665
No 314
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=27.11 E-value=2.3e+02 Score=23.74 Aligned_cols=85 Identities=16% Similarity=0.179 Sum_probs=43.0
Q ss_pred ceEEEEecCcchHHHH-HHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 50 KPLVFLGSPQVSVNVL-DALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L-~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
|||+|+-+++....-+ ++|++..... ..+++ .+.--.+...|.. ....+.+..+++||+... ..+..+.+..
T Consensus 1 ~~iLfvc~~N~~RS~mAEai~~~~~~~-~~~~v---~SaG~~~~~~g~~-~~~~a~~~l~~~Gid~s~-h~s~~l~~~~- 73 (141)
T cd00115 1 KKVLFVCTGNICRSPMAEAIFRHLAPK-LDIEV---DSAGTSGWHVGGR-PDPRAIAVLAEHGIDISG-HRARQLTEDD- 73 (141)
T ss_pred CeEEEEecChhhhhHHHHHHHHHHhhh-CCEEE---ECCCCCCccCCCC-CCHHHHHHHHHcCCCccc-CeeeeCCHHH-
Confidence 5899998887544433 5566542110 12333 2211111101112 233456777889999421 3344444322
Q ss_pred HHHHHhcCCcEEEEecCC
Q 048078 129 LSNLRALQPELCITAAYG 146 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~ 146 (378)
+ .++|++|++.-.
T Consensus 74 ---~--~~aDlIi~m~~~ 86 (141)
T cd00115 74 ---F--DEFDLIITMDES 86 (141)
T ss_pred ---H--HhCCEEEEECHH
Confidence 2 468999998754
No 315
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=27.05 E-value=1.5e+02 Score=29.30 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=43.8
Q ss_pred CChHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCC
Q 048078 99 LPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIP 157 (378)
Q Consensus 99 ~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~ 157 (378)
+......+|+..|.|+ +.+|-.+..+.....+.+++||.++.+|=..=+++..=+..
T Consensus 40 D~~lA~~iaellNA~V--lttpwg~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~L 96 (337)
T COG2247 40 DLLLALPIAELLNAPV--LTTPWGIYNESVLDEIIELNPDLVLIIGGPIAVSPNYENAL 96 (337)
T ss_pred HHHHhhHHHHHhCCee--EecCcccccHHHHHHHHhhCCceEEEECCCCcCChhHHHHH
Confidence 3456788999999993 33454667788888899999999999998877877665543
No 316
>PRK05866 short chain dehydrogenase; Provisional
Probab=27.03 E-value=3.3e+02 Score=25.80 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=19.7
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
..+|++.|. +.++..+.+.|.+. +++|+++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~------G~~Vi~~ 70 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARR------GATVVAV 70 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC------CCEEEEE
Confidence 367888885 44666666777664 5776544
No 317
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=26.94 E-value=2.4e+02 Score=28.03 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=37.0
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCC-CC-CC--CccCChHHHHHHHHCCCCCcee
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSR-RD-RG--RKVLPSPVAQYALDRGFPADLI 117 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~-~g-rg--~~~~~~~v~~~A~~~gIp~~~v 117 (378)
||++.-|+-.-..++-.|+... ++++++|..+.-.. .+ ++ .......++++|+++|||++.+
T Consensus 1 kVlValSGGvDSsvla~lL~~~-----g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vv 66 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ-----GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVV 66 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHc-----CCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 5777778876667776666542 57787775432110 00 11 1112346889999999997643
No 318
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=26.92 E-value=74 Score=30.67 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC-----------CCCCCCchHHHHHHHcCCcEEEEEEE
Q 048078 126 DAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL-----------LPLYRGAAPVQRALQGGAKETGVSLA 194 (378)
Q Consensus 126 ~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl-----------LP~yRG~~pi~wai~~g~~~tGvTih 194 (378)
+++-+.+++.+||++|+++-.|..- -+.+..+.=+|+..+.. -..++|...+-+.|...-...|+.+-
T Consensus 38 ~~~~~~v~~~~PD~iVvis~dH~~~-f~~~~~p~f~i~~~~~~~g~~~~~g~~~~~~~~g~~~LA~~i~~~~~~~g~d~~ 116 (276)
T cd07949 38 PPVHDWLEKAKPDVAVVFYNDHGLN-FFLDKMPTFAVGAAPSYRNADEGWGIPALAPFKGDPELSWHLIESLVEDEFDIT 116 (276)
T ss_pred HHHHHHHHHcCCCEEEEECCcHHhh-hccccCCcEEEecCccccCcccccCCCCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 3556788899999999998322110 00111111134433322 25577888888888776666666555
Q ss_pred Ee-cCCCCCCC
Q 048078 195 FT-VRALDAGP 204 (378)
Q Consensus 195 ~~-~~~~D~G~ 204 (378)
.. +-++|.|-
T Consensus 117 ~~~~~~lDHG~ 127 (276)
T cd07949 117 TCQEMLVDHAC 127 (276)
T ss_pred ccCCCCCCcch
Confidence 43 44577776
No 319
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=26.92 E-value=3.8e+02 Score=26.74 Aligned_cols=116 Identities=13% Similarity=0.032 Sum_probs=61.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
--+|++.|-+-.+.-.++.... .+.+|+++=..+++ .+.|+++|-.+. .. .+ +++.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka------~ga~Via~~~~~~K-------------~e~a~~lGAd~~--i~-~~--~~~~ 222 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKA------MGAEVIAITRSEEK-------------LELAKKLGADHV--IN-SS--DSDA 222 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------cCCeEEEEeCChHH-------------HHHHHHhCCcEE--EE-cC--Cchh
Confidence 4589999988544444444332 25777766444332 688999998843 22 11 4455
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCc---eEEEccCCCCCCCCchHHHHHHHcCCcEEEEE
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMG---TVNIHPSLLPLYRGAAPVQRALQGGAKETGVS 192 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g---~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvT 192 (378)
.+.+++. +|+++...=..-+.+.+-..-+.| ++.+++ +.-.=.-|.+.-++++.+-.|..
T Consensus 223 ~~~~~~~-~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~---~~~~~~~~~~~li~~~~~i~GS~ 285 (339)
T COG1064 223 LEAVKEI-ADAIIDTVGPATLEPSLKALRRGGTLVLVGLPG---GGPIPLLPAFLLILKEISIVGSL 285 (339)
T ss_pred hHHhHhh-CcEEEECCChhhHHHHHHHHhcCCEEEEECCCC---CcccCCCCHHHhhhcCeEEEEEe
Confidence 6666664 999887654222322222222333 333332 11111234555666666666643
No 320
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=26.89 E-value=2e+02 Score=27.22 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=22.7
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcC
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
|+|++.|. +.++..+.+.|++. +++|.++...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~------g~~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ------GEEVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC------CCEEEEEEec
Confidence 57899985 55667777888874 5777766543
No 321
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=26.79 E-value=2.3e+02 Score=27.46 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=47.1
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC-CCCCceecCCC-CCC
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR-GFPADLIFTPE-RAG 124 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~-gIp~~~v~~~~-~~~ 124 (378)
..+.||+++|.+. +.+++.+++.. ..+-+ ++..-|. .|.++|+++ .++...-+.|. ++.
T Consensus 75 ~~pk~VLiiGgGd--G~tlRevlkh~-----~ve~i-~~VEID~-----------~Vi~~ar~~l~~~~~~~~dpRv~i~ 135 (282)
T COG0421 75 PNPKRVLIIGGGD--GGTLREVLKHL-----PVERI-TMVEIDP-----------AVIELARKYLPEPSGGADDPRVEII 135 (282)
T ss_pred CCCCeEEEECCCc--cHHHHHHHhcC-----CcceE-EEEEcCH-----------HHHHHHHHhccCcccccCCCceEEE
Confidence 3446999999995 89999999862 23322 2222222 488899886 22210001111 111
Q ss_pred cHHHHHHHHhc--CCcEEEEecCCC
Q 048078 125 EDAFLSNLRAL--QPELCITAAYGN 147 (378)
Q Consensus 125 ~~~~~~~l~~~--~~Dliv~~~~~~ 147 (378)
-.+-.+.+++. .+|+|++-++-.
T Consensus 136 i~Dg~~~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 136 IDDGVEFLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred eccHHHHHHhCCCcCCEEEEcCCCC
Confidence 23345666644 499999988755
No 322
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=26.77 E-value=2.3e+02 Score=32.77 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCceEEEEecCcch-----------HHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 48 RKKPLVFLGSPQVS-----------VNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a-----------~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
...||+++|++... ..++++|.+. ++++++|=++|.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~------G~~vi~v~~np~ 52 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEE------GYQVVLVNPNPA 52 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHc------CCEEEEEeCCcc
Confidence 35799999999752 3467777764 789888866553
No 323
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=26.71 E-value=3.6e+02 Score=28.91 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=28.3
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCC
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSR 91 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~ 91 (378)
...+||+++|++..+....++..+. +++++.+-.+++.+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~~~ap 58 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPLEDCP 58 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCCc
Confidence 4567999999998777777776653 78887775555433
No 324
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=26.69 E-value=3.6e+02 Score=25.31 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=54.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCCh------HHHHHHHHCCCCCceecCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPS------PVAQYALDRGFPADLIFTPER 122 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~------~v~~~A~~~gIp~~~v~~~~~ 122 (378)
++|+.+.-.+......++.++.. ++.+.|.|-.|.-. |++..+. .++++-.++|..+. +.--..
T Consensus 118 ~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~PGfg--GQ~f~~~~l~KI~~lr~~~~~~~~~~~-IeVDGG 187 (228)
T PRK08091 118 TVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDPRTG--TKAPSDLILDRVIQVENRLGNRRVEKL-ISIDGS 187 (228)
T ss_pred CceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECCCCC--CccccHHHHHHHHHHHHHHHhcCCCce-EEEECC
Confidence 34999998888889999888874 67788887655433 3333333 33344456665532 221233
Q ss_pred CCcHHHHHHHHhcCCcEEEEecC
Q 048078 123 AGEDAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 123 ~~~~~~~~~l~~~~~Dliv~~~~ 145 (378)
++. +.+..+.+.++|++|+-++
T Consensus 188 I~~-~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 188 MTL-ELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred CCH-HHHHHHHHCCCCEEEEChh
Confidence 554 4567788899999887654
No 325
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=26.66 E-value=1.8e+02 Score=27.90 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCcEEEEecC-CCcCChhhhcCCC
Q 048078 127 AFLSNLRALQPELCITAAY-GNILPSKFLNIPP 158 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~-~~ilp~~il~~~~ 158 (378)
++.+.++..+||++|=++- +..+.+++++...
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma 129 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXA 129 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHh
Confidence 5778888899999998886 8899999998643
No 326
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=26.65 E-value=2.3e+02 Score=28.49 Aligned_cols=61 Identities=13% Similarity=-0.001 Sum_probs=38.9
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCce
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADL 116 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~ 116 (378)
..||++.-|+..-..++-.|+... ++++++|..+...... .......++++|+++|||++.
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~-----G~~V~~v~~~~~~~~~--~~~d~~~a~~va~~LgIp~~v 65 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEA-----GYEVTGVTFRFYEFNG--STEYLEDARALAERLGIGHIT 65 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHc-----CCeEEEEEEecCCCCC--ChHHHHHHHHHHHHhCCCEEE
Confidence 358888888877777777777642 6888887654211000 001123468999999999764
No 327
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=26.61 E-value=77 Score=33.50 Aligned_cols=121 Identities=12% Similarity=0.195 Sum_probs=68.0
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEEecCcchHHHHHHHHHccCCCC--CCceEEEEEcCCCCCCCCCCccCChHHHHHHHH
Q 048078 32 KGPATSSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPD--SIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD 109 (378)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~--~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~ 109 (378)
+-|-+|--.+++..++.-+-|+-.||+.-+.-++..|..--..++ .+--.++|++-|..... ....+..+.++..
T Consensus 246 ptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela---~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 246 PTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELA---SQIFSEAKKFGKA 322 (731)
T ss_pred CCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHH---HHHHHHHHHhhhh
Confidence 445677777888888888999999999855555555543222211 12223445544432100 0122344566677
Q ss_pred CCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEE
Q 048078 110 RGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNI 164 (378)
Q Consensus 110 ~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNi 164 (378)
+||.+..++.-... . +-...|+ .+++++|+ -|..+|+..+.+..|+
T Consensus 323 ygl~~v~~ygGgsk-~-eQ~k~Lk-~g~EivVa------TPgRlid~VkmKatn~ 368 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSK-W-EQSKELK-EGAEIVVA------TPGRLIDMVKMKATNL 368 (731)
T ss_pred ccceEEEeecCCcH-H-HHHHhhh-cCCeEEEe------chHHHHHHHHhhcccc
Confidence 78987665543322 2 2234555 67888875 3555666555555553
No 328
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=26.25 E-value=3.8e+02 Score=26.86 Aligned_cols=93 Identities=10% Similarity=-0.043 Sum_probs=49.0
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCC-CccCChHHHHHHHHCC--CCCceecCCCCC
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRG-RKVLPSPVAQYALDRG--FPADLIFTPERA 123 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg-~~~~~~~v~~~A~~~g--Ip~~~v~~~~~~ 123 (378)
..+.||++.|+..-....++ +++. .+..||+-=+....+.-+. ......|+..+|+++- +|+.....|...
T Consensus 227 ~~~~ril~tG~~~~~~~i~~-~iE~-----~G~~VV~~e~c~g~r~~~~~v~~~~dpl~alA~~yl~~~~C~~~~~p~~~ 300 (377)
T TIGR03190 227 KTGARFMTIGSENDDIAFMA-MVES-----VGATIVIDDQCSGTRYFWNASKPEDDVIKAIAERYCDRPACPTKDYPVHT 300 (377)
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHH-----CCCEEEEECCCcccccccccCCCCccHHHHHHHHhcCCCCCCCcCCCHHH
Confidence 56789999999742233334 4443 2555543221111110011 0112357889999873 332211122222
Q ss_pred CcHHHHHHHHhcCCcEEEEecC
Q 048078 124 GEDAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~ 145 (378)
.-+.+.+.+++.++|=+|....
T Consensus 301 R~~~i~~lv~~~~~DGVI~~~~ 322 (377)
T TIGR03190 301 RYDHVLGLAKEYNVQGAIFLQQ 322 (377)
T ss_pred HHHHHHHHHHHhCCCEEEEecc
Confidence 2345667888999999987664
No 329
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=26.01 E-value=1.4e+02 Score=29.69 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=23.2
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
|||+++|. +..+...++.|.+. ..++++.+++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccc
Confidence 68999996 65566666666543 368888776543
No 330
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=25.83 E-value=1.2e+02 Score=28.91 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=35.8
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPAD 115 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~ 115 (378)
..|+++||+.....+.+.|.+...++ ...+|++|=|.-- -.+++.++|||.+
T Consensus 43 g~ViGiGsGstv~~~v~~i~q~l~~~-~l~~vvgVPts~~-------------s~q~~~~~gi~l~ 94 (261)
T KOG3075|consen 43 GMVIGIGSGSTVVYAVDRIGQLLFDG-DLGNVVGVPTSFR-------------SAQLALEYGIPLS 94 (261)
T ss_pred CeEEEecCccHHHHHHHHHHHHhcCC-CcCceEecccchh-------------hHHHHHhcCCccc
Confidence 57999999997777888885543222 2356776654321 2789999999954
No 331
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.82 E-value=3.7e+02 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=20.3
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
..+|++.|. +.++..+.+.|++. +++|+.+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~------G~~v~~~~ 36 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQ------GANVVINY 36 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEEe
Confidence 457888885 44666677778764 57764443
No 332
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.69 E-value=2.5e+02 Score=26.75 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=43.5
Q ss_pred CCCCCcHHHHHHHHh---cCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHH
Q 048078 120 PERAGEDAFLSNLRA---LQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQ 183 (378)
Q Consensus 120 ~~~~~~~~~~~~l~~---~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~ 183 (378)
+++++++.+-+.|-. -.||++|-.|=-+.|+.=++=...+--|-+.+.+-|.++=.+ +.+||.
T Consensus 172 ~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d-l~~al~ 237 (249)
T PRK14831 172 PSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDE-FHKALL 237 (249)
T ss_pred hHhCCHHHHHHhhccCCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCCCcCCHHH-HHHHHH
Confidence 456666666555532 369999988876777776666666778889999999997542 344443
No 333
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.66 E-value=2.1e+02 Score=28.39 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=49.5
Q ss_pred EEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc---HH
Q 048078 53 VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE---DA 127 (378)
Q Consensus 53 vf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~---~~ 127 (378)
++||.+ +..-|..++... +.+-+.|||.+.... . .....+.+..++.|+.+. ++. .. +... .+
T Consensus 4 i~~G~g--~l~~l~~~l~~~-----~~~~~lvv~~~~~~~-~---~~~~~v~~~L~~~~~~~~-~~~~~~~~p~~~~v~~ 71 (370)
T cd08551 4 IIFGAG--AIEKLGEEIKNL-----GGRKALIVTDPGLVK-T---GVLDKVIDSLKEAGIEVV-IFDGVEPNPTLSNVDA 71 (370)
T ss_pred EEECcC--HHHHHHHHHHHc-----CCCeEEEEeCcchhh-C---ccHHHHHHHHHHcCCeEE-EECCCCCCCCHHHHHH
Confidence 457776 355555555431 334567888764322 0 112356777778888754 232 11 1122 24
Q ss_pred HHHHHHhcCCcEEEEecCCCcC
Q 048078 128 FLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~il 149 (378)
..+.+++.++|.+|.+|=|..+
T Consensus 72 ~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 72 AVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred HHHHHHhcCCCEEEEeCCchHH
Confidence 4566778899999999987666
No 334
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=25.53 E-value=1.5e+02 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=24.9
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
.+++||+++|.....+.-|-.|+... ..++|..+...+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~h----P~~el~~l~s~~ 73 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANH----PDFEITVMTADR 73 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhC----CCCeEEEEEChh
Confidence 56789999996655555444444432 368888887643
No 335
>PRK12829 short chain dehydrogenase; Provisional
Probab=25.48 E-value=2.7e+02 Score=25.37 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=21.9
Q ss_pred CCceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 48 RKKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 48 ~~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
+..++++.|. +.++..+.+.|++. +++|+.+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~------g~~V~~~~ 42 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEA------GARVHVCD 42 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEe
Confidence 3578999985 44666777888764 57765554
No 336
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.41 E-value=2.5e+02 Score=26.90 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=45.7
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
.++|.++|...=+....+.|... ....++...|.. | .+.+.+.+-. + .......+.+
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~-----~~~~~~ss~t~~------g--------~~l~~~~~~~---~-~~G~l~~e~l 58 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAA-----PVDIILSSLTGY------G--------AKLAEQIGPV---R-VGGFLGAEGL 58 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhcc-----CccEEEEEcccc------c--------ccchhccCCe---e-ecCcCCHHHH
Confidence 57899998765577777887764 123344344432 2 1233333322 1 2234556788
Q ss_pred HHHHHhcCCcEEEEecC
Q 048078 129 LSNLRALQPELCITAAY 145 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~ 145 (378)
.++|++.++|++|=+..
T Consensus 59 ~~~l~e~~i~llIDATH 75 (257)
T COG2099 59 AAFLREEGIDLLIDATH 75 (257)
T ss_pred HHHHHHcCCCEEEECCC
Confidence 99999999999998774
No 337
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=25.41 E-value=1.4e+02 Score=28.88 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=53.0
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFL 129 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~ 129 (378)
.+++++....-|.-+|+.|.+.. ++-|++|| |.-. +..+..++..|= ++-++..+++..+.
T Consensus 68 ik~lVIACNTASa~al~~LR~~~-----~iPVvGvi--Paik----------~A~~~t~~~~Ig--ViaT~~Tvks~~y~ 128 (269)
T COG0796 68 IKALVIACNTASAVALEDLREKF-----DIPVVGVI--PAIK----------PAVALTRNGRIG--VIATPATVKSNAYR 128 (269)
T ss_pred CCEEEEecchHHHHHHHHHHHhC-----CCCEEEec--cchH----------HHHHhccCCeEE--EEeccchhccHHHH
Confidence 78899998888888999998763 68899999 3211 222222222233 13355667777888
Q ss_pred HHHHhcCCcEEEE-ecCCCcC
Q 048078 130 SNLRALQPELCIT-AAYGNIL 149 (378)
Q Consensus 130 ~~l~~~~~Dliv~-~~~~~il 149 (378)
+.++++++|..|- .+...++
T Consensus 129 ~~i~~~~~~~~V~~la~p~lV 149 (269)
T COG0796 129 DLIARFAPDCEVESLACPELV 149 (269)
T ss_pred HHHHHhCCCCEEEEecCcchH
Confidence 8898888887663 3444444
No 338
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=25.37 E-value=3.4e+02 Score=25.69 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=23.2
Q ss_pred CceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcC
Q 048078 49 KKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 49 ~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
.++|++.| ++-++..+.+.|++. +++|++++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQR------GYTVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcC
Confidence 46899999 455566666788774 6788776644
No 339
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=25.29 E-value=2e+02 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred CceEEEEecCcchHHHHHHHHHc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
..||+++|.+..+..+++.|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~ 24 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS 24 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHh
Confidence 57999999999999999999876
No 340
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=25.19 E-value=84 Score=27.08 Aligned_cols=50 Identities=22% Similarity=0.162 Sum_probs=36.9
Q ss_pred CceEEEccCCCCCCCCchH----HHHHHHcCCcEEEEEEEEecCCCCCCCeeEE
Q 048078 159 MGTVNIHPSLLPLYRGAAP----VQRALQGGAKETGVSLAFTVRALDAGPVIAR 208 (378)
Q Consensus 159 ~g~iNiHpSlLP~yRG~~p----i~wai~~g~~~tGvTih~~~~~~D~G~Ii~Q 208 (378)
...+-.|+=.+|.+||.+- .+|-.+--...+-+++-++.+..--|.||.|
T Consensus 60 ~~~vecHa~y~P~fRG~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~ 113 (151)
T PF11039_consen 60 PSVVECHAMYDPGFRGYALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICR 113 (151)
T ss_pred eeeEEEEeeeccccchhHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhh
Confidence 3489999999999999432 3454333345666777788899999998876
No 341
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=25.16 E-value=1.8e+02 Score=31.38 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=35.6
Q ss_pred ccccccccccceeeEeeecCCCCCCCCCCCCCCCCCceEEEEecCc-chHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 14 EKTKEMNSSLMIRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIvf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
+.+|.|+...|.+.+--..|.--.|. .+-...+.|||++.|... ++..+.+.|++. .+++|+++.-
T Consensus 282 ~g~~~~~~~~~~~g~~~~~g~~~~~~--~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~-----~g~~V~~l~r 348 (660)
T PRK08125 282 GDGLYMQGSQLAQELGLVAGARLNSK--PACSAKRRTRVLILGVNGFIGNHLTERLLRD-----DNYEVYGLDI 348 (660)
T ss_pred CCCCccCHHHHhcCCCCCCCCEeccc--chhhhhcCCEEEEECCCchHHHHHHHHHHhC-----CCcEEEEEeC
Confidence 56668887776665321111100000 001124567999999544 444455677764 1588887753
No 342
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.15 E-value=98 Score=29.58 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=21.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
.||+++|.+.++......|..+ +++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~------G~~V~l~ 32 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH------GFDVTIY 32 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc------CCeEEEE
Confidence 5899999999888777766654 5665544
No 343
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=25.13 E-value=2.4e+02 Score=26.73 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=49.2
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHH--CCCCCceecCCCCC-CcH
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD--RGFPADLIFTPERA-GED 126 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~--~gIp~~~v~~~~~~-~~~ 126 (378)
|||++||...=+..+.+.|.+. ++-++.|+|.-. .+.... .+++ +. .... +.+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~------g~v~~sv~t~~g--------------~~~~~~~~~~~~---v~-~G~lg~~~ 56 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEA------GYVIVSVATSYG--------------GELLKPELPGLE---VR-VGRLGDEE 56 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhc------CCEEEEEEhhhh--------------HhhhccccCCce---EE-ECCCCCHH
Confidence 7899988665577777888775 342345555422 122222 2344 33 2344 667
Q ss_pred HHHHHHHhcCCcEEEEecC--CCcCChhhh
Q 048078 127 AFLSNLRALQPELCITAAY--GNILPSKFL 154 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~--~~ilp~~il 154 (378)
++.+.+++.+++++|=+.. -..+.+...
T Consensus 57 ~l~~~l~~~~i~~vIDATHPfA~~is~na~ 86 (249)
T PF02571_consen 57 GLAEFLRENGIDAVIDATHPFAAEISQNAI 86 (249)
T ss_pred HHHHHHHhCCCcEEEECCCchHHHHHHHHH
Confidence 8889999999999988773 334444443
No 344
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=25.10 E-value=3.1e+02 Score=24.73 Aligned_cols=32 Identities=9% Similarity=0.081 Sum_probs=20.2
Q ss_pred CceEEEEecCc-chHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 49 KKPLVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 49 ~~rIvf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
+.+|++.|... ++..+.+.|++. +++++.++.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~------g~~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR------GWSVGINYA 34 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeC
Confidence 34788888554 566666777764 567654443
No 345
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=25.04 E-value=3.2e+02 Score=26.42 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=41.5
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHH------CCCCCceecCCCC
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD------RGFPADLIFTPER 122 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~------~gIp~~~v~~~~~ 122 (378)
++|++.|. +-++..+.+.|++. +++|+++.-.++.. . ...+.....+ .++. +.. .+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~-~------~~~~~~~~~~~~~~~~~~~~---~~~-~D 63 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK------GYEVHGLIRRSSSF-N------TQRIEHIYEDPHNVNKARMK---LHY-GD 63 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC------CCEEEEEecCCccc-c------hhhhhhhhhcccccccccee---EEE-ec
Confidence 37888885 44566666778774 67877654322210 0 0012222211 1233 222 23
Q ss_pred CCc-HHHHHHHHhcCCcEEEEecC
Q 048078 123 AGE-DAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 123 ~~~-~~~~~~l~~~~~Dliv~~~~ 145 (378)
+.+ +.+.+.++..++|++|-.+.
T Consensus 64 l~d~~~l~~~~~~~~~d~ViH~Aa 87 (343)
T TIGR01472 64 LTDSSNLRRIIDEIKPTEIYNLAA 87 (343)
T ss_pred cCCHHHHHHHHHhCCCCEEEECCc
Confidence 444 45556777778998876664
No 346
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=24.92 E-value=3.3e+02 Score=22.56 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=42.6
Q ss_pred EEEEecCc-----chHHHHHHHHHccCCCCCCceEEEEEcC--CCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCC
Q 048078 52 LVFLGSPQ-----VSVNVLDALFNASSSPDSIFEVAAIVTQ--PPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAG 124 (378)
Q Consensus 52 Ivf~Gs~~-----~a~~~L~~L~~~~~~~~~~~ei~~Vvt~--~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~ 124 (378)
|+|+-+++ ++...++.+++.. ....++|..-=+. +.. .....+.+.++++||+... ..+..+.
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~--~~~~~~v~SAG~~~~~~~-------~~~~~a~~~l~~~gid~~~-~~s~~l~ 70 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQR--LGDRFEVESAGTEAWPGE-------PVDPRAIAVLKEHGIDISG-HRSRQLT 70 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHT--HTTTEEEEEEESSSTTTS-------SSTHHHHHHHHHTTSSCTT-SBBCBGG
T ss_pred CEEEeCCCcchHHHHHHHHHHhcccc--ccCCcEEEEEeecccccc-------cccchHHHHHHHhCCCccc-ceecccc
Confidence 55666555 3445555554431 1125666544333 221 2345677888999999431 2344443
Q ss_pred cHHHHHHHHhcCCcEEEEecCC
Q 048078 125 EDAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~ 146 (378)
... + .++|++|++.-.
T Consensus 71 ~~~----~--~~~D~Ii~m~~~ 86 (138)
T PF01451_consen 71 EED----L--DEADLIITMDDS 86 (138)
T ss_dssp HHH----H--HHSSEEEESSHH
T ss_pred ccc----c--ccCCEEEEccHH
Confidence 322 2 368999998643
No 347
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=24.92 E-value=1.8e+02 Score=27.58 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=25.2
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
|+|+++|.+.++..+++.+.+. ..++++++|.-
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D 33 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYD 33 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEec
Confidence 6899999999888888876543 14688888763
No 348
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=24.90 E-value=3.1e+02 Score=27.72 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCCceEEEEecCcchHHHHHHHHHcc
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNAS 72 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~ 72 (378)
..+++|+++|-++++.-.-+.|+++.
T Consensus 50 k~tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 50 KATLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ccceEEEEEecCcHHHHHHHHHHhcC
Confidence 44789999999999988889999873
No 349
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=24.85 E-value=4.8e+02 Score=23.86 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=13.6
Q ss_pred HHHHHHhcCCcEEEEecC
Q 048078 128 FLSNLRALQPELCITAAY 145 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~ 145 (378)
+.+.+++.++|++++...
T Consensus 72 ~~~~~~~~~~dvv~~~~~ 89 (359)
T cd03808 72 LYRLLRKERPDIVHTHTP 89 (359)
T ss_pred HHHHHHhcCCCEEEEccc
Confidence 446677889999988754
No 350
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.76 E-value=1.9e+02 Score=27.77 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.3
Q ss_pred HHHHHHHHCCCCCceecCCCC-CCcHHHHHHHHhcCCcEEEEe
Q 048078 102 PVAQYALDRGFPADLIFTPER-AGEDAFLSNLRALQPELCITA 143 (378)
Q Consensus 102 ~v~~~A~~~gIp~~~v~~~~~-~~~~~~~~~l~~~~~Dliv~~ 143 (378)
.+.+.|.++|+|...++-..- ...+.=...++++++|++|+=
T Consensus 161 ~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q~~id~vItK 203 (257)
T COG2099 161 DVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQYRIDVVVTK 203 (257)
T ss_pred HHHHHHHhcCCChhhEEEecCCcChHHHHHHHHHhCCCEEEEc
Confidence 357889999999665543211 112222467889999999973
No 351
>PRK07060 short chain dehydrogenase; Provisional
Probab=24.69 E-value=3.4e+02 Score=24.34 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=40.2
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH-
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED- 126 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~- 126 (378)
..++++.|. +.++..+.+.|.+. +++|+.+..+ . ..+.+.+.+.+.. ++.. +..+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~-~-----------~~~~~~~~~~~~~---~~~~-D~~~~~ 66 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR------GARVVAAARN-A-----------AALDRLAGETGCE---PLRL-DVGDDA 66 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCC-H-----------HHHHHHHHHhCCe---EEEe-cCCCHH
Confidence 458888986 45666777777764 5776544322 1 1345556555544 2222 23333
Q ss_pred HHHHHHHhc-CCcEEEEec
Q 048078 127 AFLSNLRAL-QPELCITAA 144 (378)
Q Consensus 127 ~~~~~l~~~-~~Dliv~~~ 144 (378)
.+.+.+... .+|++|...
T Consensus 67 ~v~~~~~~~~~~d~vi~~a 85 (245)
T PRK07060 67 AIRAALAAAGAFDGLVNCA 85 (245)
T ss_pred HHHHHHHHhCCCCEEEECC
Confidence 333444433 478888655
No 352
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=24.68 E-value=5.8e+02 Score=24.68 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=13.3
Q ss_pred HHHHHHHhcCCcEEEEe
Q 048078 127 AFLSNLRALQPELCITA 143 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~ 143 (378)
.+.+.|++++||++|+.
T Consensus 112 ~L~~iIr~~~PdvVvT~ 128 (283)
T TIGR03446 112 PLVRVIREFRPHVITTY 128 (283)
T ss_pred HHHHHHHHcCCEEEEec
Confidence 45677889999988874
No 353
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=24.54 E-value=2.8e+02 Score=28.15 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=44.5
Q ss_pred CCceEEEEecCcchHHH-HHHHHHccCCCC--CCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCC
Q 048078 48 RKKPLVFLGSPQVSVNV-LDALFNASSSPD--SIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAG 124 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~-L~~L~~~~~~~~--~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~ 124 (378)
.-|+|+|-|--...-.. .++++++.-... ..-+-..|||+.... .+|+ .--|++.||| +. .
T Consensus 296 ~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~-~~gk-------~~~a~~~gip---l~-----~ 359 (377)
T PRK05601 296 AGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRD-LDGK-------AMHAQRKGIP---LL-----S 359 (377)
T ss_pred cCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCC-ccch-------hhhhhhcCCC---cc-----C
Confidence 36899999876544443 355665532211 123456788876543 2222 3578999999 53 4
Q ss_pred cHHHHHHHHhc
Q 048078 125 EDAFLSNLRAL 135 (378)
Q Consensus 125 ~~~~~~~l~~~ 135 (378)
|++|++.++..
T Consensus 360 d~~fl~~~~~v 370 (377)
T PRK05601 360 DVAFLAAVERV 370 (377)
T ss_pred HHHHHHHHHHh
Confidence 78899888754
No 354
>PRK06057 short chain dehydrogenase; Provisional
Probab=24.54 E-value=3.6e+02 Score=24.52 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=20.4
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
..+|++.|. +.++..+.+.|.+. +++|+++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~------G~~v~~~ 37 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAE------GATVVVG 37 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc------CCEEEEE
Confidence 357888886 44666677777764 5776554
No 355
>PRK14057 epimerase; Provisional
Probab=24.38 E-value=4e+02 Score=25.44 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=54.7
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChH------HHHHHHHCCCCCceecCCCC
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSP------VAQYALDRGFPADLIFTPER 122 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~------v~~~A~~~gIp~~~v~~~~~ 122 (378)
.++..+.-.+.-....++.++.. ++.+.|.|-.|.-. |++..+.. ++++-.++|..+. +.--..
T Consensus 132 ~~kaGlAlnP~Tp~e~i~~~l~~-------vD~VLvMtV~PGfg--GQ~Fi~~~l~KI~~lr~~~~~~~~~~~-IeVDGG 201 (254)
T PRK14057 132 PVIRGISLCPATPLDVIIPILSD-------VEVIQLLAVNPGYG--SKMRSSDLHERVAQLLCLLGDKREGKI-IVIDGS 201 (254)
T ss_pred cceeEEEECCCCCHHHHHHHHHh-------CCEEEEEEECCCCC--chhccHHHHHHHHHHHHHHHhcCCCce-EEEECC
Confidence 46888888888889999988874 67788887655433 33443332 3344446665532 221234
Q ss_pred CCcHHHHHHHHhcCCcEEEEecC
Q 048078 123 AGEDAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 123 ~~~~~~~~~l~~~~~Dliv~~~~ 145 (378)
++. +.+..+.+.++|++|+-++
T Consensus 202 I~~-~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 202 LTQ-DQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred CCH-HHHHHHHHCCCCEEEEChH
Confidence 554 4567788889998887654
No 356
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=24.28 E-value=2.3e+02 Score=26.26 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=19.6
Q ss_pred eEEEEec-CcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 51 PLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 51 rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
||+++|. +.++..+.+.|++. +++|.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~------g~~v~~~ 29 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE------GRVVVAL 29 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc------CCEEEEe
Confidence 6888994 66666677888764 5776554
No 357
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=24.28 E-value=2.2e+02 Score=27.04 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=22.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEE
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVA 82 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~ 82 (378)
.+||+|+|.+..+....+.|.+. +++|.
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~ 29 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLV 29 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEE
Confidence 46899999999988888888764 56664
No 358
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=23.93 E-value=3.8e+02 Score=25.74 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=42.9
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHH-----CCCCCceecCCCC
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD-----RGFPADLIFTPER 122 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~-----~gIp~~~v~~~~~ 122 (378)
.++|++.|. +-++..+.+.|++. +++|+++.-.++.... ..+...+.. .++. +.. .+
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~------G~~V~~~~r~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~-~D 68 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSK------GYEVHGIIRRSSNFNT-------QRLDHIYIDPHPNKARMK---LHY-GD 68 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC------CCEEEEEecccccccc-------cchhhhccccccccCceE---EEE-ec
Confidence 468999995 55666677888774 5777765432221100 011222111 1222 222 23
Q ss_pred CCc-HHHHHHHHhcCCcEEEEecC
Q 048078 123 AGE-DAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 123 ~~~-~~~~~~l~~~~~Dliv~~~~ 145 (378)
+.+ +.+.+.++..++|++|-++.
T Consensus 69 l~d~~~~~~~~~~~~~d~Vih~A~ 92 (340)
T PLN02653 69 LSDASSLRRWLDDIKPDEVYNLAA 92 (340)
T ss_pred CCCHHHHHHHHHHcCCCEEEECCc
Confidence 333 44556677778998887765
No 359
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=23.75 E-value=1e+02 Score=30.56 Aligned_cols=36 Identities=28% Similarity=0.330 Sum_probs=26.1
Q ss_pred CCceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 48 RKKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 48 ~~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
+++||+++| |+..+...++.|.+. ..++++++++.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~ 38 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASE 38 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcCh
Confidence 368999998 777777777777653 357898885543
No 360
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=23.66 E-value=1.4e+02 Score=28.46 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCC-CcHHHHHHHHhcCCcEEEEecCCC
Q 048078 82 AAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERA-GEDAFLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 82 ~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~-~~~~~~~~l~~~~~Dliv~~~~~~ 147 (378)
+.++.+|.+-.++..+ ....+.+..+++|+.+. ++..... ...+..+...+.++|++|++|=--
T Consensus 4 ~~ii~Np~sg~~~~~~-~~~~i~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 4 APAILNPTAGKSNDNK-PLREVIMLLREEGMEIH-VRVTWEKGDAARYVEEARKFGVDTVIAGGGDG 68 (293)
T ss_pred EEEEECCCccchhhHH-HHHHHHHHHHHCCCEEE-EEEecCcccHHHHHHHHHhcCCCEEEEECCCC
Confidence 3456666432222111 12346666778888755 2322222 222333334445688888887433
No 361
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=23.55 E-value=7.8e+02 Score=25.59 Aligned_cols=144 Identities=16% Similarity=0.183 Sum_probs=81.4
Q ss_pred CCCCceEEEEe---cCc--chHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCC
Q 048078 46 VSRKKPLVFLG---SPQ--VSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTP 120 (378)
Q Consensus 46 ~~~~~rIvf~G---s~~--~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~ 120 (378)
..+|-.|.+.| |+. .++..-..|.+ .+..+..|-|+--+|.- ...++++|++.|+| +|..
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk------~~~kvllVaaD~~RpAA------~eQL~~La~q~~v~---~f~~ 161 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK------KGKKVLLVAADTYRPAA------IEQLKQLAEQVGVP---FFGS 161 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHH------cCCceEEEecccCChHH------HHHHHHHHHHcCCc---eecC
Confidence 34456666665 443 12222233333 25666666665433321 34688999999999 6654
Q ss_pred CCCCcH-----HHHHHHHhcCCcEEEEecCCCc-CChhhhcCCCCceEEEccCCCCC--------CCCchHHHHH--HHc
Q 048078 121 ERAGED-----AFLSNLRALQPELCITAAYGNI-LPSKFLNIPPMGTVNIHPSLLPL--------YRGAAPVQRA--LQG 184 (378)
Q Consensus 121 ~~~~~~-----~~~~~l~~~~~Dliv~~~~~~i-lp~~il~~~~~g~iNiHpSlLP~--------yRG~~pi~wa--i~~ 184 (378)
..-.++ +-++..++...|++++-.-||+ +.+++++- +..+|--+=|. --|-..++.| +-+
T Consensus 162 ~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~E----l~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 162 GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDE----LKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHH----HHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 322222 2245666778999998776654 46666553 22233333332 2365555544 555
Q ss_pred CCcEEEEEEEEecCCCCCCCeeEE
Q 048078 185 GAKETGVSLAFTVRALDAGPVIAR 208 (378)
Q Consensus 185 g~~~tGvTih~~~~~~D~G~Ii~Q 208 (378)
...-||+-+-++|..--.|.-|.-
T Consensus 238 ~l~itGvIlTKlDGdaRGGaALS~ 261 (451)
T COG0541 238 ALGITGVILTKLDGDARGGAALSA 261 (451)
T ss_pred hcCCceEEEEcccCCCcchHHHhh
Confidence 556788888888877666665443
No 362
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=23.54 E-value=2.6e+02 Score=24.23 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=33.9
Q ss_pred CceEEEEecCcc--hHHHHHHHHHccCCCCCCceEEEEEcCCCCCC--CCCCcc-CChHHHHHHHHCCCCCc
Q 048078 49 KKPLVFLGSPQV--SVNVLDALFNASSSPDSIFEVAAIVTQPPSRR--DRGRKV-LPSPVAQYALDRGFPAD 115 (378)
Q Consensus 49 ~~rIvf~Gs~~~--a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~--grg~~~-~~~~v~~~A~~~gIp~~ 115 (378)
+.=|++.|-+.| +...|..+.+. .+..++.||.+...-. +..... ...++.++|+.+|++..
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~t~~~~-----~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~ 126 (157)
T cd02001 60 RKVIVVDGDGSLLMNPGVLLTAGEF-----TPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVL 126 (157)
T ss_pred CcEEEEECchHHHhcccHHHHHHHh-----cCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceE
Confidence 445677777765 33344333322 1356777776544211 111111 24578999999999954
No 363
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=23.41 E-value=1.4e+02 Score=29.08 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=55.7
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
...-++++||++.-+...++++.... +++-+.|+...+... ..+.+..+++++++. ..++
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~--------~~~~~~~~~~~~~v~---~~~~---- 185 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERA--------EAFAARLRDLGVPVV---AVDS---- 185 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHH--------HHHHHHHHCCCTCEE---EESS----
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHH--------HHHHHhhccccccce---eccc----
Confidence 34568999999999999999888763 466677776433211 123444444677733 2222
Q ss_pred HHHHHHHhcCCcEEEEecCCC----cCChhhhcCCCCceEEEccCCCCCCCCchH
Q 048078 127 AFLSNLRALQPELCITAAYGN----ILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~----ilp~~il~~~~~g~iNiHpSlLP~yRG~~p 177 (378)
..+.+ .+.|+++++.-.. ++..+.|. +.-.||.-.+.-|..|=..+
T Consensus 186 -~~~av--~~aDii~taT~s~~~~P~~~~~~l~--~g~hi~~iGs~~~~~~El~~ 235 (313)
T PF02423_consen 186 -AEEAV--RGADIIVTATPSTTPAPVFDAEWLK--PGTHINAIGSYTPGMRELDD 235 (313)
T ss_dssp -HHHHH--TTSSEEEE----SSEEESB-GGGS---TT-EEEE-S-SSTTBESB-H
T ss_pred -hhhhc--ccCCEEEEccCCCCCCccccHHHcC--CCcEEEEecCCCCchhhcCH
Confidence 12333 4689999887543 47777664 34578888888888777654
No 364
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=23.35 E-value=4.6e+02 Score=26.19 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=51.7
Q ss_pred EEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc---HH
Q 048078 53 VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE---DA 127 (378)
Q Consensus 53 vf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~---~~ 127 (378)
++||.+ +...+...++.. +.+-++|||.+.-.+ .| ....+.+..++.|+.+. ++. .. +... .+
T Consensus 10 i~fG~g--~l~~l~~~l~~~-----g~~r~lvvt~~~~~~-~g---~~~~v~~~L~~~~i~~~-~~~~v~~~p~~~~v~~ 77 (379)
T TIGR02638 10 SYFGAG--AIEDIVDEVKRR-----GFKKALVVTDKDLIK-FG---VADKVTDLLDEAGIAYE-LFDEVKPNPTITVVKA 77 (379)
T ss_pred EEECcC--HHHHHHHHHHhc-----CCCEEEEEcCcchhh-cc---chHHHHHHHHHCCCeEE-EECCCCCCcCHHHHHH
Confidence 347877 455555555432 345677888754211 00 23457777888999865 332 11 1112 23
Q ss_pred HHHHHHhcCCcEEEEecCCCcCC
Q 048078 128 FLSNLRALQPELCITAAYGNILP 150 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ilp 150 (378)
..+.+++.++|++|.+|=|..+.
T Consensus 78 ~~~~~~~~~~D~IiaiGGGSviD 100 (379)
T TIGR02638 78 GVAAFKASGADYLIAIGGGSPID 100 (379)
T ss_pred HHHHHHhcCCCEEEEeCChHHHH
Confidence 45667788999999999887763
No 365
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=23.31 E-value=3.5e+02 Score=23.44 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=47.0
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCcee--cCCCC--CCc-
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLI--FTPER--AGE- 125 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v--~~~~~--~~~- 125 (378)
||++.-|+.....++-.++...... .+.++.+|..+..-... .......+.++|+.+|+|.+.+ ..... .+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 77 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPE--SDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLE 77 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCch--HHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHH
Confidence 4666666654444544444321100 12467666554321110 0113456889999999997644 11111 111
Q ss_pred --------HHHHHHHHhcCCcEEEEecCC
Q 048078 126 --------DAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 126 --------~~~~~~l~~~~~Dliv~~~~~ 146 (378)
..+.+..++.++|.++.....
T Consensus 78 ~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~ 106 (185)
T cd01992 78 AAAREARYDFFAEIAKEHGADVLLTAHHA 106 (185)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 223345567788888775543
No 366
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=23.22 E-value=1.6e+02 Score=26.92 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=47.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..||+++|.+..+..-++.|++. +.+|. ||++... ..+.+++++.+|. +.. .. ...+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~------ga~Vt-Vvsp~~~----------~~l~~l~~~~~i~---~~~-~~-~~~~d 66 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA------GAQLR-VIAEELE----------SELTLLAEQGGIT---WLA-RC-FDADI 66 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC------CCEEE-EEcCCCC----------HHHHHHHHcCCEE---EEe-CC-CCHHH
Confidence 35999999999999989999986 45554 5554322 2467777776665 322 11 12221
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLN 155 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~ 155 (378)
+ .++|++|.+.=-.-+...+..
T Consensus 67 ---l--~~~~lVi~at~d~~ln~~i~~ 88 (205)
T TIGR01470 67 ---L--EGAFLVIAATDDEELNRRVAH 88 (205)
T ss_pred ---h--CCcEEEEECCCCHHHHHHHHH
Confidence 2 357777655422224444444
No 367
>PRK06046 alanine dehydrogenase; Validated
Probab=23.11 E-value=3.3e+02 Score=26.68 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=59.8
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHH----CCCCCceecCCCC
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD----RGFPADLIFTPER 122 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~----~gIp~~~v~~~~~ 122 (378)
....+|+++|++..+...+++|... .+++.+.|+..... ...+++++ .++++. + .++
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~-----------~~~~~~~~~~~~~~~~v~-~--~~~ 187 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKS-----------SAEKFVERMSSVVGCDVT-V--AED 187 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHH-----------HHHHHHHHHHhhcCceEE-E--eCC
Confidence 4467999999999989898888754 25777777754322 23445544 354421 1 111
Q ss_pred CCcHHHHHHHHhcCCcEEEEecC--CCcCChhhhcCCCCceEEEccCCCCCCCCchH
Q 048078 123 AGEDAFLSNLRALQPELCITAAY--GNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177 (378)
Q Consensus 123 ~~~~~~~~~l~~~~~Dliv~~~~--~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~p 177 (378)
..+.+ + .|+++++.- ..++..+.+. +.-.||.=.|.-|.-|=..+
T Consensus 188 -----~~~~l-~--aDiVv~aTps~~P~~~~~~l~--~g~hV~~iGs~~p~~~El~~ 234 (326)
T PRK06046 188 -----IEEAC-D--CDILVTTTPSRKPVVKAEWIK--EGTHINAIGADAPGKQELDP 234 (326)
T ss_pred -----HHHHh-h--CCEEEEecCCCCcEecHHHcC--CCCEEEecCCCCCccccCCH
Confidence 22334 2 899988763 2344444443 23356666667676666544
No 368
>PRK07340 ornithine cyclodeaminase; Validated
Probab=23.07 E-value=2.7e+02 Score=26.98 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=61.7
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC---CCCCceecCCCCC
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR---GFPADLIFTPERA 123 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~---gIp~~~v~~~~~~ 123 (378)
....+|+++|++..+...++++.... +++-+.|+. +.. ....++|++. +++ +. ..+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~-r~~----------~~a~~~a~~~~~~~~~---~~-~~~- 181 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRG-RTA----------ASAAAFCAHARALGPT---AE-PLD- 181 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEc-CCH----------HHHHHHHHHHHhcCCe---eE-ECC-
Confidence 44579999999999999999987642 344445553 321 1345566554 444 22 111
Q ss_pred CcHHHHHHHHhcCCcEEEEecC--CCcCChhhhcCCCCceEEEccCCCCCCCCchH
Q 048078 124 GEDAFLSNLRALQPELCITAAY--GNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177 (378)
Q Consensus 124 ~~~~~~~~l~~~~~Dliv~~~~--~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~p 177 (378)
..+.+ .+.|+++++.- ..++... + -+.-.||.=.|..|.-|=..|
T Consensus 182 ----~~~av--~~aDiVitaT~s~~Pl~~~~-~--~~g~hi~~iGs~~p~~~El~~ 228 (304)
T PRK07340 182 ----GEAIP--EAVDLVVTATTSRTPVYPEA-A--RAGRLVVAVGAFTPDMAELAP 228 (304)
T ss_pred ----HHHHh--hcCCEEEEccCCCCceeCcc-C--CCCCEEEecCCCCCCcccCCH
Confidence 12233 38999998753 3455543 2 234478888888888777654
No 369
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=23.01 E-value=2.5e+02 Score=28.01 Aligned_cols=88 Identities=16% Similarity=0.111 Sum_probs=51.3
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-C-CCCCc--
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-P-ERAGE-- 125 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~-~~~~~-- 125 (378)
.|| +||.+ +...|..+++.. + +=+.|||.+......+ ....+.+..++.|+.+. ++. . .+...
T Consensus 5 ~~i-~fG~g--~l~~l~~~~~~~-----g-~r~livt~~~~~~~~g---~~~~v~~~L~~~~~~~~-~~~~v~~~p~~~~ 71 (380)
T cd08185 5 TKI-VFGAG--KLNELGEEALKP-----G-KKALIVTGNGSSKKTG---YLDRVIELLKQAGVEVV-VFDKVEPNPTTTT 71 (380)
T ss_pred CeE-EECcC--HHHHHHHHHHhc-----C-CeEEEEeCCCchhhcc---HHHHHHHHHHHcCCeEE-EeCCccCCCCHHH
Confidence 344 57877 466665555531 2 3467888654311111 12356777788899865 332 1 11122
Q ss_pred -HHHHHHHHhcCCcEEEEecCCCcCC
Q 048078 126 -DAFLSNLRALQPELCITAAYGNILP 150 (378)
Q Consensus 126 -~~~~~~l~~~~~Dliv~~~~~~ilp 150 (378)
.+..+.+++.++|++|.+|=|..+.
T Consensus 72 v~~~~~~~~~~~~D~IiavGGGS~iD 97 (380)
T cd08185 72 VMEGAALAREEGCDFVVGLGGGSSMD 97 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccHHH
Confidence 3445677889999999999776663
No 370
>PLN02775 Probable dihydrodipicolinate reductase
Probab=23.01 E-value=2.2e+02 Score=27.70 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=25.8
Q ss_pred CCCceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcC
Q 048078 47 SRKKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 47 ~~~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
+..+||++.| ++..+..+.+++.+ . ++++++.+-.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~-----~~~Lv~~~~~ 44 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-A-----GLQLVPVSFT 44 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-C-----CCEEEEEecc
Confidence 4468999999 55577777777776 2 6899887643
No 371
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=22.89 E-value=89 Score=27.56 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=44.4
Q ss_pred hHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCChhhhcC-----CCCceEEEccC
Q 048078 101 SPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNI-----PPMGTVNIHPS 167 (378)
Q Consensus 101 ~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~-----~~~g~iNiHpS 167 (378)
..+.++|+++|+.+. |.. ..+-....+++.+||.+|-+++.+-|-+.+.+. +..|++|..|+
T Consensus 76 g~l~~lae~~g~~v~-i~~----Ggt~ar~~ik~~~p~~iigVAC~~dL~~g~~~~~~~~ip~~gV~l~~~g 142 (158)
T PF01976_consen 76 GDLKKLAEKYGYKVY-IAT----GGTLARKIIKEYRPKAIIGVACERDLISGIQDLKPLGIPVQGVLLDRPG 142 (158)
T ss_pred hHHHHHHHHcCCEEE-EEc----ChHHHHHHHHHhCCCEEEEEechHHHHHHHHHHhhcCCCeeEEEeCCCC
Confidence 468899999999943 221 133445788999999999999988877766654 44566776665
No 372
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.89 E-value=1.8e+02 Score=23.87 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=20.0
Q ss_pred eEEEEe----cCcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 51 PLVFLG----SPQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 51 rIvf~G----s~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
+|+++| -+.++..+++.|.+. +++|..|
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~V 33 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPV 33 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEE
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC------CCEEEEE
Confidence 688888 345888899999884 4666555
No 373
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=22.88 E-value=1e+02 Score=26.96 Aligned_cols=32 Identities=25% Similarity=0.181 Sum_probs=27.3
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
+||++-|-+.++..+|++++.. ..++|++|--
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~-----~~~evvaInd 32 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQ-----PDIEVVAIND 32 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTS-----TTEEEEEEEE
T ss_pred CEEEEECCCcccHHHHHhhccc-----ceEEEEEEec
Confidence 6999999999999999999854 4799998853
No 374
>PRK05993 short chain dehydrogenase; Provisional
Probab=22.85 E-value=3.7e+02 Score=25.03 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=19.3
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.+|++.|. +.++..+.+.|.+. +++|+++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~------G~~Vi~~~ 35 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD------GWRVFATC 35 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEE
Confidence 46888886 44566666777664 57766553
No 375
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=22.78 E-value=3e+02 Score=26.79 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=32.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFP 113 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp 113 (378)
+||+|+|-+..+.+.-..|+++ ++++. |. ++... ...+++.+.|..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~-v~-~r~~~----------ka~~~~~~~Ga~ 46 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVT-VY-NRTPE----------KAAELLAAAGAT 46 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEE-EE-eCChh----------hhhHHHHHcCCc
Confidence 5899999999999999999987 56643 33 33321 235667777766
No 376
>PRK06180 short chain dehydrogenase; Provisional
Probab=22.74 E-value=4e+02 Score=24.73 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=21.0
Q ss_pred CceEEEEecC-cchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 49 KKPLVFLGSP-QVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 49 ~~rIvf~Gs~-~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
..+|++.|.. .++..+.+.|++. +++|+++..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~------G~~V~~~~r 36 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA------GHRVVGTVR 36 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC------cCEEEEEeC
Confidence 3568888854 4666666777764 677766543
No 377
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=22.70 E-value=3.1e+02 Score=23.85 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=61.6
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC-CCCCcee---cCC--CCCC
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR-GFPADLI---FTP--ERAG 124 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~-gIp~~~v---~~~--~~~~ 124 (378)
-++|++++.......+.|.+.. =+-|||+.- ++.....++ ++.+..+ +.+ ....
T Consensus 21 ~~Ifld~GtT~~~la~~L~~~~--------~ltVvTnsl------------~ia~~l~~~~~~~vi~~GG~~~~~~~~~~ 80 (161)
T PF00455_consen 21 DTIFLDSGTTTLELAKYLPDKK--------NLTVVTNSL------------PIANELSENPNIEVILLGGEVNPKSLSFV 80 (161)
T ss_pred CEEEEECchHHHHHHHHhhcCC--------ceEEEECCH------------HHHHHHHhcCceEEEEeCCEEEcCCCcEE
Confidence 4789999876666666665431 256888753 345555554 5663211 112 1233
Q ss_pred cHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCc
Q 048078 125 EDAFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAK 187 (378)
Q Consensus 125 ~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~ 187 (378)
.+...+.|+++.+|+.++... .|+.+.++.=.....+.+..+++..-+
T Consensus 81 G~~a~~~l~~~~~d~afi~~~---------------gi~~~~G~~~~~~~~a~vk~~~~~~s~ 128 (161)
T PF00455_consen 81 GPIALEALRQFRFDKAFIGAD---------------GISEEGGLTTSDEEEAEVKRAMIENSK 128 (161)
T ss_pred CchHHHHHHhhccceEEeccc---------------EecCCCccccchHHHHHHHHHHHHhcC
Confidence 566778999999999987554 344444555555556677777776543
No 378
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=22.65 E-value=3.1e+02 Score=28.23 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHH
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~ 130 (378)
+|+++|.+..+..+.+.+... +.+|+.+=.++.+ ...|...|.. +.. +.+
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-------------a~~A~~~G~~---v~~--------l~e 263 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-------------ALQAAMDGFR---VMT--------MEE 263 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-------------hHHHHhcCCE---ecC--------HHH
Q ss_pred HHHhcCCcEEEEe-cCCCcCChhhhcCCCCceEEE
Q 048078 131 NLRALQPELCITA-AYGNILPSKFLNIPPMGTVNI 164 (378)
Q Consensus 131 ~l~~~~~Dliv~~-~~~~ilp~~il~~~~~g~iNi 164 (378)
.++ .+|++|.+ +-..+|..+.+...+.|.+-+
T Consensus 264 al~--~aDVVI~aTG~~~vI~~~~~~~mK~Gaili 296 (425)
T PRK05476 264 AAE--LGDIFVTATGNKDVITAEHMEAMKDGAILA 296 (425)
T ss_pred HHh--CCCEEEECCCCHHHHHHHHHhcCCCCCEEE
No 379
>PRK06823 ornithine cyclodeaminase; Validated
Probab=22.56 E-value=4.1e+02 Score=25.99 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=66.7
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
....++++||++.-+...+++++... .++-+.|+...+... ..+.+.+++.++++.. .++
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a--------~~~~~~~~~~~~~v~~---~~~---- 185 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETAL--------EEYRQYAQALGFAVNT---TLD---- 185 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHH--------HHHHHHHHhcCCcEEE---ECC----
Confidence 44679999999999999999887753 455566665433211 1234444555777321 111
Q ss_pred HHHHHHHhcCCcEEEEecC--CCcCChhhhcCCCCceEEEccCCCCCCCCchH
Q 048078 127 AFLSNLRALQPELCITAAY--GNILPSKFLNIPPMGTVNIHPSLLPLYRGAAP 177 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~--~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~p 177 (378)
..+.+ .+.|+++++.- ..++..+.+. +.-.||.=.|..|..|-..|
T Consensus 186 -~~~av--~~ADIV~taT~s~~P~~~~~~l~--~G~hi~~iGs~~p~~~Eld~ 233 (315)
T PRK06823 186 -AAEVA--HAANLIVTTTPSREPLLQAEDIQ--PGTHITAVGADSPGKQELDA 233 (315)
T ss_pred -HHHHh--cCCCEEEEecCCCCceeCHHHcC--CCcEEEecCCCCcccccCCH
Confidence 11222 57999988754 3556666654 44578888888898887765
No 380
>PRK06349 homoserine dehydrogenase; Provisional
Probab=22.56 E-value=3.2e+02 Score=27.95 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=28.2
Q ss_pred CCceEEEEecCcchHHHHHHHHHccC----CCCCCceEEEEEcC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASS----SPDSIFEVAAIVTQ 87 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~----~~~~~~ei~~Vvt~ 87 (378)
+++||+++|.+.++...++.|.+... ....++++++|+..
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~ 45 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR 45 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC
Confidence 46899999999988888887755321 01125788888754
No 381
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=22.51 E-value=2.3e+02 Score=25.14 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=50.2
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHH-HHHHCCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQ-YALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~-~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
-.+++++|.+..+..+-+.|... +..| .|+..| |+.. .|...|.. +..
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~------Ga~V--~V~e~D------------Pi~alqA~~dGf~---v~~-------- 71 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGL------GARV--TVTEID------------PIRALQAAMDGFE---VMT-------- 71 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHT------T-EE--EEE-SS------------HHHHHHHHHTT-E---EE---------
T ss_pred CCEEEEeCCCcccHHHHHHHhhC------CCEE--EEEECC------------hHHHHHhhhcCcE---ecC--------
Confidence 35799999999998898888764 4554 344333 2333 34456776 321
Q ss_pred HHHHHHhcCCcEEEEe-cCCCcCChhhhcCCCCceEEEccCC
Q 048078 128 FLSNLRALQPELCITA-AYGNILPSKFLNIPPMGTVNIHPSL 168 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~-~~~~ilp~~il~~~~~g~iNiHpSl 168 (378)
+.+.+ ..+|++|++ |-..+|..+.++..+.++|=.--+-
T Consensus 72 ~~~a~--~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh 111 (162)
T PF00670_consen 72 LEEAL--RDADIFVTATGNKDVITGEHFRQMKDGAILANAGH 111 (162)
T ss_dssp HHHHT--TT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSS
T ss_pred HHHHH--hhCCEEEECCCCccccCHHHHHHhcCCeEEeccCc
Confidence 22333 368999874 4557889898888888877665553
No 382
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=22.47 E-value=1.9e+02 Score=29.53 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=22.9
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
|||.++|++..++.+--.|-+ .+|+|++|=-++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~------~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE------LGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHH------cCCeEEEEeCCH
Confidence 899999999876665444433 369988874443
No 383
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=22.45 E-value=64 Score=19.85 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=11.0
Q ss_pred CchHHHHHHHcCC
Q 048078 174 GAAPVQRALQGGA 186 (378)
Q Consensus 174 G~~pi~wai~~g~ 186 (378)
|..|++||...|.
T Consensus 2 G~TpLh~A~~~~~ 14 (33)
T PF00023_consen 2 GNTPLHYAAQRGH 14 (33)
T ss_dssp SBBHHHHHHHTTC
T ss_pred cccHHHHHHHHHH
Confidence 7789999998884
No 384
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.40 E-value=6e+02 Score=24.76 Aligned_cols=65 Identities=20% Similarity=0.162 Sum_probs=39.8
Q ss_pred ceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCcee--cCCCCCCcHHHHHHHHhcCCcEEEEecCCC
Q 048078 79 FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLI--FTPERAGEDAFLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 79 ~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v--~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 147 (378)
.+-+++|... ...|+. ....+.+.+++.|+.+... +.+...+-...+..++..+||++++.+++.
T Consensus 140 ~~kvaiv~~~-~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~ 206 (351)
T cd06334 140 GKKIALVYHD-SPFGKE---PIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGV 206 (351)
T ss_pred CCeEEEEeCC-Cccchh---hHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccc
Confidence 4456666543 344543 2235678889999984321 111222234556778889999999998875
No 385
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=22.39 E-value=1.3e+02 Score=29.90 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC---------------CCCCCCchHHHHHHHcCCcEEEE
Q 048078 127 AFLSNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL---------------LPLYRGAAPVQRALQGGAKETGV 191 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl---------------LP~yRG~~pi~wai~~g~~~tGv 191 (378)
++-+.+++.+||++|+++-.|. ..-+.+..+.=+|+.++.. ...|+|...+-+.|...-...|+
T Consensus 37 ~l~~~v~~~~PD~iVV~~sdH~-~~~f~d~~P~f~I~~~~~~~G~~~~~~~~~~~~~~~~~~gd~eLA~~I~~~l~~~G~ 115 (329)
T cd07369 37 KLGRTLTAARPDVIIAFLDDHF-ENHFRTNMPTIAIGVAESHSGPADQLMEALRVPKKHYFPGNPEVAEQLLRALVHDSF 115 (329)
T ss_pred HHHHHHHHhCCCEEEEEcCCch-hhhccccCccEEEeecceeeccchhccccCCCCcccCCCCCHHHHHHHHHHHHHCCC
Confidence 4557788999999999854452 2222232222255555543 24577788888888765555555
Q ss_pred EEEEe-cCCCCCC
Q 048078 192 SLAFT-VRALDAG 203 (378)
Q Consensus 192 Tih~~-~~~~D~G 203 (378)
.+-.. +-++|+|
T Consensus 116 dva~~~~~~~DHG 128 (329)
T cd07369 116 DCARMGEIEYGNN 128 (329)
T ss_pred CeeecCCcCCCcc
Confidence 44322 2235665
No 386
>PLN02204 diacylglycerol kinase
Probab=22.34 E-value=2e+02 Score=31.08 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=41.0
Q ss_pred EEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCc-HHHHHHHH---hcCCcEEEEecCCCcC
Q 048078 81 VAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGE-DAFLSNLR---ALQPELCITAAYGNIL 149 (378)
Q Consensus 81 i~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~-~~~~~~l~---~~~~Dliv~~~~~~il 149 (378)
=+.|+.+|-.-+|++.+.+. .+..+.++.++.+.++. .....+ .++.+.+. ..++|.+|++|=--.+
T Consensus 161 ~llVivNP~sGkg~~~~~~~-~V~p~f~~a~i~~~v~~-T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~ 231 (601)
T PLN02204 161 NLLVFVHPLSGKGSGSRTWE-TVSPIFIRAKVKTKVIV-TERAGHAFDVMASISNKELKSYDGVIAVGGDGFF 231 (601)
T ss_pred eEEEEECCCCCCcchHHHHH-HHHHHHHHcCCeEEEEE-ecCcchHHHHHHHHhhhhccCCCEEEEEcCccHH
Confidence 35677788665566555444 57888889999976443 333332 33444332 3568999999854444
No 387
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=22.29 E-value=3e+02 Score=29.08 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=53.9
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCC--
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERA-- 123 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~-- 123 (378)
...+-||+++|.+..+...+..+... +.+|.+ +-..+ ...+.|++.|..+..+ .+.+.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a-~D~~~------------~rle~aeslGA~~v~i-~~~e~~~ 221 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL------GAIVRA-FDTRP------------EVAEQVESMGAEFLEL-DFEEEGG 221 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC------CCEEEE-EeCCH------------HHHHHHHHcCCeEEEe-ccccccc
Confidence 34578999999998877777776553 554332 22221 2478899999874322 22110
Q ss_pred --------CcHHHH----HHHHh--cCCcEEEEecCC------CcCChhhhcCCCCc
Q 048078 124 --------GEDAFL----SNLRA--LQPELCITAAYG------NILPSKFLNIPPMG 160 (378)
Q Consensus 124 --------~~~~~~----~~l~~--~~~Dliv~~~~~------~ilp~~il~~~~~g 160 (378)
..+++. +.+.+ .++|++|.+... .++.++.++..+.|
T Consensus 222 ~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG 278 (509)
T PRK09424 222 SGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG 278 (509)
T ss_pred cccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC
Confidence 011222 22222 369999988852 24445566655544
No 388
>PRK13373 putative dioxygenase; Provisional
Probab=22.28 E-value=1.5e+02 Score=29.70 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCcEEEEecC-------CCcCChhhhcCC-----CCce--EEEccCCCCCCCCchHHHHHHHcCC
Q 048078 127 AFLSNLRALQPELCITAAY-------GNILPSKFLNIP-----PMGT--VNIHPSLLPLYRGAAPVQRALQGGA 186 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~-------~~ilp~~il~~~-----~~g~--iNiHpSlLP~yRG~~pi~wai~~g~ 186 (378)
++-+.+++.+||++|+++- ....|.=.+-.. +++- ...|+...+.++|..-+-|.|.+..
T Consensus 37 ~ir~~i~e~kPDVvVv~~nDH~~~Ff~d~mP~F~IG~a~~~~g~~~~~g~~~~~~~~~~~~g~~elA~~l~~~l 110 (344)
T PRK13373 37 RLGRSLDAARPDVIIAFLDDHFENHFRSLMPTVGIGVADSHPGPATQWLEALRLTRQERFGGAPEIAERLLRSL 110 (344)
T ss_pred HHHHHHHHhCCCEEEEEccchhhhhccccCCceEEEecccccCCccccccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 4567788999999999953 233333222110 1111 1144455678889888888777543
No 389
>PRK11175 universal stress protein UspE; Provisional
Probab=22.19 E-value=1.9e+02 Score=27.39 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEEecCCCc---------CChhhhcCCCCceEEEcc
Q 048078 102 PVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCITAAYGNI---------LPSKFLNIPPMGTVNIHP 166 (378)
Q Consensus 102 ~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~i---------lp~~il~~~~~g~iNiHp 166 (378)
.+.+++++++++...+.-......+++.+..++.++|++|+...++- ....+++..+..++-++|
T Consensus 227 ~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~ 300 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKP 300 (305)
T ss_pred HHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcC
Confidence 45677778898842111111222456778888999999998876553 244455555555666654
No 390
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=22.19 E-value=1.1e+02 Score=27.94 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=22.6
Q ss_pred ceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEE
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAA 83 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~ 83 (378)
|||+|+| ++.++......|.+. +++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v 29 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIII 29 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEE
Confidence 6899997 899988888888875 477753
No 391
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=22.17 E-value=3.3e+02 Score=26.47 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=22.1
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.|||++.|. +-++..+.+.|++. +++|+++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~------G~~V~~~~ 41 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQR------GYTVHATL 41 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe
Confidence 679999995 44666677778774 57777654
No 392
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=22.16 E-value=4.2e+02 Score=26.54 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=50.0
Q ss_pred EEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc---HH
Q 048078 53 VFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE---DA 127 (378)
Q Consensus 53 vf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~---~~ 127 (378)
++||.+ +...|..+++... ..+.+-+.|||.+.....-| ....+.+..++.|+.+. ++. .+ +... .+
T Consensus 4 i~fG~g--~~~~l~~~l~~~~--~~g~kr~livtd~~~~~~~g---~~~~v~~~L~~~gi~~~-~f~~v~~~p~~~~v~~ 75 (383)
T cd08186 4 LYFGVG--AIEKIGEILKDLK--SKGISKVLLVTGKSAYKKSG---AWDKVEPALDEHGIEYV-LYNKVTPNPTVDQVDE 75 (383)
T ss_pred EEECcC--HHHHHHHHHHHhc--ccCCCEEEEEcCccHHhhcC---hHHHHHHHHHHcCCeEE-EeCCCCCCCCHHHHHH
Confidence 457877 4556655554310 00234567888654211001 12357777788899854 332 11 1111 24
Q ss_pred HHHHHHhcCCcEEEEecCCCcC
Q 048078 128 FLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~il 149 (378)
..+.+++.++|++|.+|=|..+
T Consensus 76 ~~~~~~~~~~D~IIaiGGGS~i 97 (383)
T cd08186 76 AAKLGREFGAQAVIAIGGGSPI 97 (383)
T ss_pred HHHHHHHcCCCEEEEeCCccHH
Confidence 4567788899999999877665
No 393
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=22.05 E-value=5.1e+02 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHhcCCcEEEEecC
Q 048078 129 LSNLRALQPELCITAAY 145 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~ 145 (378)
+|.|.+.+||++|...+
T Consensus 106 ~E~i~~l~PDLVi~~~~ 122 (317)
T PRK10957 106 AEAVAAQMPDLIVISAT 122 (317)
T ss_pred HHHHhhcCCCEEEEeCC
Confidence 46677889999998654
No 394
>PRK05717 oxidoreductase; Validated
Probab=22.04 E-value=5.7e+02 Score=23.21 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=19.9
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
..+|++.|. +.++..+.+.|++. +.+|+.+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~ 40 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAE------GWQVVLA 40 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc------CCEEEEE
Confidence 457888885 45666777888775 4665443
No 395
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.97 E-value=2.6e+02 Score=28.50 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=62.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..|+++.|.+..+....+.|.+. +++++++++....+ ... + ++...++. .+. .++
T Consensus 300 gkrvai~~~~~~~~~l~~~L~El------G~~~~~~~~~~~~~----------~~~----~--~~~~~~~~-~D~--~~~ 354 (417)
T cd01966 300 GKRVAIALEPDLLAALSSFLAEM------GAEIVAAVATTDSP----------ALE----K--LPAEEVVV-GDL--EDL 354 (417)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHC------CCEEEEEEECCCCH----------HHH----h--CcccceEe-CCH--HHH
Confidence 47899999888788887888763 78998888754321 111 1 22111221 222 233
Q ss_pred HHHHHhcCCcEEEEecCCCcCChhhhcCCCCceEE----------EccCCCCCCCCchHHHHHHHc
Q 048078 129 LSNLRALQPELCITAAYGNILPSKFLNIPPMGTVN----------IHPSLLPLYRGAAPVQRALQG 184 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iN----------iHpSlLP~yRG~~pi~wai~~ 184 (378)
.+.++ ++|+++.-++.+.+..+. .. .++. .+...+=-|||.--+-..|.|
T Consensus 355 e~~~~--~~dllig~s~~~~~A~~~-~i---p~~~~g~Pi~dr~~~~~~~~~Gy~G~~~l~~~i~n 414 (417)
T cd01966 355 EDLAA--EADLLVTNSHGRQAAERL-GI---PLLRAGFPIFDRLGAAHKCTIGYRGTRDLLFEIAN 414 (417)
T ss_pred HHhcc--cCCEEEEcchhHHHHHhc-CC---CEEEecCCcccccccccccccchHHHHHHHHHHHH
Confidence 33444 499999999988776652 22 2333 345555668887666655555
No 396
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=21.97 E-value=3.8e+02 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=21.8
Q ss_pred CceEEEEEc-CCCCCCCCC-CccCChHHHHHHHHCCCCCcee
Q 048078 78 IFEVAAIVT-QPPSRRDRG-RKVLPSPVAQYALDRGFPADLI 117 (378)
Q Consensus 78 ~~ei~~Vvt-~~~~~~grg-~~~~~~~v~~~A~~~gIp~~~v 117 (378)
+++|+++++ .+....... .......++..|+..|||...+
T Consensus 21 G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i 62 (218)
T TIGR03679 21 GHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKI 62 (218)
T ss_pred CCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEE
Confidence 678865544 322111101 1122356788999999996533
No 397
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=21.87 E-value=4.7e+02 Score=24.99 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=39.4
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCce-EEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFE-VAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDA 127 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~e-i~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~ 127 (378)
.-+|++.|.+..+...++.+... +.+ |++ ++..+. -.++|++.|... ++.....+.+.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~-~~~~~~------------~~~~~~~~ga~~--~i~~~~~~~~~ 222 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL------GAEDVIG-VDPSPE------------RLELAKALGADF--VINSGQDDVQE 222 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCCEEEE-ECCCHH------------HHHHHHHhCCCE--EEcCCcchHHH
Confidence 45888888875555544443322 455 443 222221 246778888752 33332221222
Q ss_pred HHHHHHhcCCcEEEEecCCC
Q 048078 128 FLSNLRALQPELCITAAYGN 147 (378)
Q Consensus 128 ~~~~l~~~~~Dliv~~~~~~ 147 (378)
+.+......+|+++-+..+.
T Consensus 223 ~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 223 IRELTSGAGADVAIECSGNT 242 (339)
T ss_pred HHHHhCCCCCCEEEECCCCH
Confidence 32333334689998665443
No 398
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=21.83 E-value=1.2e+02 Score=26.21 Aligned_cols=32 Identities=28% Similarity=0.217 Sum_probs=25.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEc
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVT 86 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt 86 (378)
+||++.|.+.++..+++.+.+. ..++++++.-
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~-----~~~~lvai~d 32 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER-----PDIEVVAIND 32 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CCCEEEEeec
Confidence 6899999999988888887753 3688888764
No 399
>PLN02413 choline-phosphate cytidylyltransferase
Probab=21.82 E-value=5.4e+02 Score=25.16 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=25.7
Q ss_pred CCCCCCCceEEEEecCc-chHHHHHHHHHccCCCCCCceEEEEEcC
Q 048078 43 AFSVSRKKPLVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAIVTQ 87 (378)
Q Consensus 43 ~~~~~~~~rIvf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~Vvt~ 87 (378)
+-+..+++||..-|.=+ |-...++.|.++.......+=||+|.++
T Consensus 21 ~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sD 66 (294)
T PLN02413 21 SSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCND 66 (294)
T ss_pred CCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence 33456677777777654 6666777777664322113445566554
No 400
>PRK07201 short chain dehydrogenase; Provisional
Probab=21.75 E-value=2.8e+02 Score=29.51 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=22.4
Q ss_pred CCCCceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 46 VSRKKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 46 ~~~~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
....+++++.|. +.++..+.+.|++. +++|+++.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~------G~~V~~~~ 402 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEA------GATVFLVA 402 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEE
Confidence 344557888885 44777777888764 56766553
No 401
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=21.74 E-value=87 Score=29.72 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=39.7
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPE 121 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~ 121 (378)
.+.+|+ ...+.|+...=++|++. +.+..|||......| ...=.+.|++.|||+..|-.|.
T Consensus 170 ~~~~ii-a~~GPfs~e~n~al~~~-------~~i~~lVtK~SG~~g------~~eKi~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 170 PPKNII-AMQGPFSKELNRALFRQ-------YGIDVLVTKESGGSG------FDEKIEAARELGIPVIVIKRPP 229 (249)
T ss_pred ChhhEE-EEeCCCCHHHHHHHHHH-------cCCCEEEEcCCCchh------hHHHHHHHHHcCCeEEEEeCCC
Confidence 344555 45556899987888875 567788996654332 1233578999999976554443
No 402
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=21.72 E-value=1.5e+02 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=26.5
Q ss_pred eEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 51 PLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 51 rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
+++++|.+.++..+++.|.+. ++++++.+...+
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~ 33 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNP 33 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCc
Confidence 588999999998888887642 689999986543
No 403
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=21.71 E-value=66 Score=30.75 Aligned_cols=94 Identities=12% Similarity=0.203 Sum_probs=53.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCC-CC------CCceE---EEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceec
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSS-PD------SIFEV---AAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIF 118 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~-~~------~~~ei---~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~ 118 (378)
..||+|+|.+.-+..+.+.|++.... +- .++-+ -++|+.... .+ ...-+.+|++.+-.
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~------~l-~~~~~~~a~~~~~~----- 92 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDRE------DL-NPHKKPFARKTNPE----- 92 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTS------SH-SHHHHHHHBSSSTT-----
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCc------cC-ChhhhhhhccCccc-----
Confidence 56999999998778888877776111 11 12222 256654321 01 22233444332211
Q ss_pred CCCCCCcHHHHHHHHhcCCcEEEEec-CCCcCChhhhcCCC
Q 048078 119 TPERAGEDAFLSNLRALQPELCITAA-YGNILPSKFLNIPP 158 (378)
Q Consensus 119 ~~~~~~~~~~~~~l~~~~~Dliv~~~-~~~ilp~~il~~~~ 158 (378)
. ....+.+.++..+||++|-++ -+.++.+++++...
T Consensus 93 ---~-~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma 129 (255)
T PF03949_consen 93 ---K-DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMA 129 (255)
T ss_dssp ---T---SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCH
T ss_pred ---c-cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHh
Confidence 0 013578889999999999998 88999999998653
No 404
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=21.68 E-value=65 Score=27.10 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=31.1
Q ss_pred CCCceEEEEecCcchH----------HHHHHHHHccCCCCCCceEE-EEEcCCCCCCCCCCccCChHHHHHHHHCCCCCc
Q 048078 47 SRKKPLVFLGSPQVSV----------NVLDALFNASSSPDSIFEVA-AIVTQPPSRRDRGRKVLPSPVAQYALDRGFPAD 115 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~----------~~L~~L~~~~~~~~~~~ei~-~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~ 115 (378)
-.+-||-++|..+++. ..++.|+. .++. .|||..-. .+..+.+.|+++++|
T Consensus 46 ~~~~RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~--------~~~P~iIvt~~~~--------~p~~l~e~a~~~~ip-- 107 (127)
T PF02603_consen 46 FHPNRIQIIGNTESAYLNSLDEEERKERLEKLFS--------YNPPCIIVTRGLE--------PPPELIELAEKYNIP-- 107 (127)
T ss_dssp TTTCSEEEE-HHHHHHHCCS-HHHHCCHHHHHCT--------TT-S-EEEETTT-----------HHHHHHHHHCT----
T ss_pred CCCCeEEEEcHHHHHHHHHCCHHHHHHHHHHHhC--------CCCCEEEEECcCC--------CCHHHHHHHHHhCCc--
Confidence 3455999999987432 22333332 3343 45565432 256799999999999
Q ss_pred eecCCCC
Q 048078 116 LIFTPER 122 (378)
Q Consensus 116 ~v~~~~~ 122 (378)
++....
T Consensus 108 -ll~t~~ 113 (127)
T PF02603_consen 108 -LLRTPL 113 (127)
T ss_dssp -EEEESS
T ss_pred -EEEcCC
Confidence 776443
No 405
>PLN00198 anthocyanidin reductase; Provisional
Probab=21.56 E-value=6.7e+02 Score=24.01 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=23.2
Q ss_pred CCceEEEEecCc-chHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 48 RKKPLVFLGSPQ-VSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 48 ~~~rIvf~Gs~~-~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
+.++|++.|... ++..+.+.|++. +++|++++-++
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~------g~~V~~~~r~~ 43 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQK------GYAVNTTVRDP 43 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHC------CCEEEEEECCC
Confidence 367899999544 555566778774 57877665443
No 406
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=21.52 E-value=3.2e+02 Score=23.44 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=29.4
Q ss_pred ChHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHh----cCCcEEEEecCCCcCChhh
Q 048078 100 PSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRA----LQPELCITAAYGNILPSKF 153 (378)
Q Consensus 100 ~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~----~~~Dliv~~~~~~ilp~~i 153 (378)
..-+.++.+++|..+..+.... .+.+++.+.|++ ...|++|+.|=.-.=+.++
T Consensus 22 ~~~l~~~l~~~G~~v~~~~~v~-Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~ 78 (152)
T cd00886 22 GPALVELLEEAGHEVVAYEIVP-DDKDEIREALIEWADEDGVDLILTTGGTGLAPRDV 78 (152)
T ss_pred HHHHHHHHHHcCCeeeeEEEcC-CCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcC
Confidence 3467888999998733211111 122344444443 2799999987544444444
No 407
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=21.51 E-value=4.4e+02 Score=24.17 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.7
Q ss_pred CceEEEEecCcchHHHHHHHHHc
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNA 71 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~ 71 (378)
..||+++|.+..+..+++.|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc
Confidence 56999999999999999999876
No 408
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=21.51 E-value=5.3e+02 Score=23.11 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=56.9
Q ss_pred ccCCcceeeccccccccccceeeEeeecCCCCCCCCCCCCCCCCCceEEEEecCc---chHHHHHHHHHccCCCCCCceE
Q 048078 5 SLHSGLVEDEKTKEMNSSLMIRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQ---VSVNVLDALFNASSSPDSIFEV 81 (378)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIvf~Gs~~---~a~~~L~~L~~~~~~~~~~~ei 81 (378)
|+|+..+.|..|++++++-+- .+.+=|+|..|.- -..+-|+.|.+... ..+++|
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~---------------------GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~--~~gl~V 60 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYA---------------------GNVLLIVNVASKCGLTPQYEQLENIQKAWA--DQGFVV 60 (183)
T ss_pred CccCcEeECCCCCEEeHHHhC---------------------CCEEEEEEEeCCCCCcHHHHHHHHHHHHHh--hCCeEE
Confidence 566777788888777765521 1133344433321 12456677776432 246888
Q ss_pred EEEEcCCCCCCCCCCccCChHHHHHHH-HCCCCCceecCCCCC---CcHHHHHHHHhcCC
Q 048078 82 AAIVTQPPSRRDRGRKVLPSPVAQYAL-DRGFPADLIFTPERA---GEDAFLSNLRALQP 137 (378)
Q Consensus 82 ~~Vvt~~~~~~grg~~~~~~~v~~~A~-~~gIp~~~v~~~~~~---~~~~~~~~l~~~~~ 137 (378)
++|-++.-.. ...-....+.++|+ ++|+++. ++..-+. +...+...|++..+
T Consensus 61 lg~p~nqf~~---qe~~~~~ei~~f~~~~~g~~Fp-v~~k~dvnG~~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 61 LGFPCNQFLG---QEPGSDEEIKTYCRTTWGVTFP-MFSKIEVNGEGRHPLYQKLIAAAP 116 (183)
T ss_pred EEeecccccc---CCCCCHHHHHHHHHHccCCCce-eEEEEccCCCCCCHHHHHHHHhCC
Confidence 8887642100 00012246889997 7888765 4432222 23457778875443
No 409
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=21.38 E-value=1.4e+02 Score=28.49 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=33.3
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFP 113 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp 113 (378)
|||++.|-+..+-+++.+|+...-....+++|.+|=++|+. .++.++|++
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~--------------nL~~~LGve 50 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDS--------------NLPEALGVE 50 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCC--------------ChHHhcCCC
Confidence 78999998887777777762211111124788777787753 477888988
No 410
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=21.31 E-value=2.1e+02 Score=33.65 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=29.9
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
.||+++|.++.+..+++++.+. ++++++|.++++.
T Consensus 2 ~kvLI~g~Geia~~iiraak~l------Gi~~v~v~sd~d~ 36 (1201)
T TIGR02712 2 DTVLIANRGEIAVRIIRTLRRM------GIRSVAVYSDADA 36 (1201)
T ss_pred cEEEEECCCHHHHHHHHHHHHc------CCeEEEEECCCCC
Confidence 4899999999999999998874 7888888887654
No 411
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=21.27 E-value=5.2e+02 Score=25.29 Aligned_cols=68 Identities=10% Similarity=0.200 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCC----CCcee--cCCCCCCcHHHHHHHHhcCCcEEEEecCCCcC
Q 048078 78 IFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGF----PADLI--FTPERAGEDAFLSNLRALQPELCITAAYGNIL 149 (378)
Q Consensus 78 ~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gI----p~~~v--~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~il 149 (378)
+.+=++|+...+. .|++ ....+.+.+++.|+ .+... +.+...+-...+..|++.++|++|+.++..-.
T Consensus 153 ~w~~vaii~~~~~-~g~~---~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~~~~~ 226 (377)
T cd06379 153 KWNKVILLVSDDH-EGRA---AQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSASEDDA 226 (377)
T ss_pred CCeEEEEEEEcCc-chhH---HHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcCHHHH
Confidence 5666777765432 3332 12357788889998 53221 21222122345667778899999998875443
No 412
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=21.26 E-value=1e+02 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.0
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
|||+.||.|.|+...+..++... +++|++|=
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-----g~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-----GFEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-----CCeEEEEE
Confidence 79999999999887788877652 57887774
No 413
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.25 E-value=4.3e+02 Score=23.72 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=20.2
Q ss_pred CceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 49 KKPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 49 ~~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
..+|++.| ++.++..+.+.|++. +++|+.+.
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~------G~~vv~~~ 36 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFARE------GARVVVNY 36 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC------CCeEEEEc
Confidence 35788888 445666677777764 56765433
No 414
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=21.23 E-value=2.1e+02 Score=27.96 Aligned_cols=89 Identities=10% Similarity=0.166 Sum_probs=50.7
Q ss_pred HHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcEEEE
Q 048078 63 NVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPELCIT 142 (378)
Q Consensus 63 ~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dliv~ 142 (378)
.+++.+.+... .--.++++|++|...| .-.+...+.+.|.++|||. +++..-. .-.+--..++.++|+||-
T Consensus 144 ~viee~~~~~g----~~~~lallTh~Dg~YG--Nl~Dakkva~ic~e~gvPl--llN~AYt-~Grmpvs~ke~g~DFiVg 214 (382)
T COG1103 144 EVIEEVKDEGG----DPPALALLTHVDGEYG--NLADAKKVAKICREYGVPL--LLNCAYT-VGRMPVSGKEIGADFIVG 214 (382)
T ss_pred HHHHHHHhccC----CCceEEEEeccCCCcC--CchhhHHHHHHHHHcCCce--Eeeccee-eccccccccccCCCEEEe
Confidence 45555554321 2245688999987654 2334557899999999994 2221000 000001245789999987
Q ss_pred ecCCCcCChhhhcCCCCceEEEc
Q 048078 143 AAYGNILPSKFLNIPPMGTVNIH 165 (378)
Q Consensus 143 ~~~~~ilp~~il~~~~~g~iNiH 165 (378)
.|.- .+-...+.|++.+-
T Consensus 215 SGHK-----smAAs~PiGvl~~~ 232 (382)
T COG1103 215 SGHK-----SMAASAPIGVLAMS 232 (382)
T ss_pred cCcc-----chhccCCeeEEeeh
Confidence 7752 34444566666553
No 415
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=21.22 E-value=2.3e+02 Score=26.03 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=48.3
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
.-||+=+|+++ +..|+.|.+. .+++..+|=.+++ -...|.+.|++ |.+-+ + ++-
T Consensus 14 gsrVLDLGCGd--G~LL~~L~~~-----k~v~g~GvEid~~-------------~v~~cv~rGv~---Viq~D-l--d~g 67 (193)
T PF07021_consen 14 GSRVLDLGCGD--GELLAYLKDE-----KQVDGYGVEIDPD-------------NVAACVARGVS---VIQGD-L--DEG 67 (193)
T ss_pred CCEEEecCCCc--hHHHHHHHHh-----cCCeEEEEecCHH-------------HHHHHHHcCCC---EEECC-H--HHh
Confidence 35899999995 8999988875 2455556543332 35678899999 66532 2 223
Q ss_pred HHHHHhcCCcEEEEecC
Q 048078 129 LSNLRALQPELCITAAY 145 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~ 145 (378)
++...+..+|++|+.--
T Consensus 68 L~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 68 LADFPDQSFDYVILSQT 84 (193)
T ss_pred HhhCCCCCccEEehHhH
Confidence 55667778999987554
No 416
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=21.04 E-value=6.1e+02 Score=22.77 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=62.4
Q ss_pred chHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHhcCCcE
Q 048078 60 VSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPEL 139 (378)
Q Consensus 60 ~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~~~~Dl 139 (378)
...+.++.+++... .....|+.|-|....+.+ ......+..++.|.....+...+..+++++.+.| .++|.
T Consensus 13 ~~~~~~~~~~~~~~--~~~~~i~~iptA~~~~~~-----~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l--~~ad~ 83 (210)
T cd03129 13 HARPILQDFLARAG--GAGARVLFIPTASGDRDE-----YGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL--LEADG 83 (210)
T ss_pred ChHHHHHHHHHHcC--CCCCeEEEEeCCCCChHH-----HHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH--hhCCE
Confidence 57778888776532 123555555444332111 1234667778889886544443345667777777 56899
Q ss_pred EEEecCCCcCChhhhcCCCCceEEEccCCCCCCCCchHHHHHHHcCCcEEEEE
Q 048078 140 CITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVS 192 (378)
Q Consensus 140 iv~~~~~~ilp~~il~~~~~g~iNiHpSlLP~yRG~~pi~wai~~g~~~tGvT 192 (378)
+++.|=.. ..+++.++ ...+...+...+.+|-...|.|
T Consensus 84 I~~~GG~~---~~~~~~l~------------~t~~~~~i~~~~~~G~v~~G~S 121 (210)
T cd03129 84 IFVGGGNQ---LRLLSVLR------------ETPLLDAILKRVARGVVIGGTS 121 (210)
T ss_pred EEEcCCcH---HHHHHHHH------------hCChHHHHHHHHHcCCeEEEcC
Confidence 99888322 23333322 1245566776666776666654
No 417
>PRK00536 speE spermidine synthase; Provisional
Probab=21.02 E-value=1.6e+02 Score=28.14 Aligned_cols=44 Identities=9% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHC
Q 048078 46 VSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDR 110 (378)
Q Consensus 46 ~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~ 110 (378)
+..+.||+++|.++ +.+++.+++.. . +|+.|=- |. .|.+.|+++
T Consensus 70 h~~pk~VLIiGGGD--Gg~~REvLkh~-----~-~v~mVeI--D~-----------~Vv~~~k~~ 113 (262)
T PRK00536 70 KKELKEVLIVDGFD--LELAHQLFKYD-----T-HVDFVQA--DE-----------KILDSFISF 113 (262)
T ss_pred CCCCCeEEEEcCCc--hHHHHHHHCcC-----C-eeEEEEC--CH-----------HHHHHHHHH
Confidence 56789999999996 88899998862 2 5554433 32 477888775
No 418
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.98 E-value=1.2e+02 Score=26.22 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=21.5
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEE
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVA 82 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~ 82 (378)
++||+|+|-+..+....+.|+++ +++|.
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~ 28 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVT 28 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEE
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEE
Confidence 47999999999999999999875 57754
No 419
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=20.98 E-value=4.5e+02 Score=26.37 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=48.8
Q ss_pred CCCceEEEEecCcchH--HHHHHHHHccCCCCCCceEEEE-EcCCCCCCCCCC-ccCChHHHHHHHHC-CCCCc--eecC
Q 048078 47 SRKKPLVFLGSPQVSV--NVLDALFNASSSPDSIFEVAAI-VTQPPSRRDRGR-KVLPSPVAQYALDR-GFPAD--LIFT 119 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~--~~L~~L~~~~~~~~~~~ei~~V-vt~~~~~~grg~-~~~~~~v~~~A~~~-gIp~~--~v~~ 119 (378)
..+.||++.|+.-... ..++ +++. .+..||+- .|...+. .+.. .....|+..+|+++ .++.. +.+.
T Consensus 231 ~~~~RIl~tG~~~~~~~~k~~~-~iE~-----~G~~VV~dd~c~g~r~-~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~ 303 (380)
T TIGR02263 231 KDNCRVIICGMFCEQPPLNLIK-SIEL-----SGCYIVDDDFIIVHRF-ENNDVALAGDPLQNLALAFLHDSISTAAKYD 303 (380)
T ss_pred CCCCEEEEECcCCCCchHHHHH-HHHH-----CCCEEEEecCCccchh-hhccCCCCCCHHHHHHHHHhhCCCCCccccC
Confidence 3579999999542222 3333 3443 25555544 2211000 0000 11346899999998 54421 1122
Q ss_pred CCCC-CcHHHHHHHHhcCCcEEEEecC
Q 048078 120 PERA-GEDAFLSNLRALQPELCITAAY 145 (378)
Q Consensus 120 ~~~~-~~~~~~~~l~~~~~Dliv~~~~ 145 (378)
+... .-+.+.+.+++.++|=+|....
T Consensus 304 ~~~~~R~~~i~~lvke~~aDGVI~~~~ 330 (380)
T TIGR02263 304 DDEADKGKYLLDQVRKNAAEGVIFAAP 330 (380)
T ss_pred CChhhHHHHHHHHHHHhCCCEEEEhHh
Confidence 2211 2345678889999999887664
No 420
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.97 E-value=44 Score=24.82 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=19.5
Q ss_pred CCccccCCcceee--ccccccccccceeeEeee
Q 048078 1 SNFFSLHSGLVED--EKTKEMNSSLMIRRFFCF 31 (378)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 31 (378)
++|++.|+.||+| +........++|+--+..
T Consensus 17 t~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~ 49 (74)
T cd04875 17 SGFLAEHGGNIVESDQFVDPDSGRFFMRVEFEL 49 (74)
T ss_pred HHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEe
Confidence 3688999999999 444344444555544443
No 421
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=20.95 E-value=1e+02 Score=27.76 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=31.7
Q ss_pred hHHHHHHHHCCCCCce-ecCCCCCCcHHHHHHHHhcCCcEEEEecCCCcCChhhhcCCC
Q 048078 101 SPVAQYALDRGFPADL-IFTPERAGEDAFLSNLRALQPELCITAAYGNILPSKFLNIPP 158 (378)
Q Consensus 101 ~~v~~~A~~~gIp~~~-v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~ 158 (378)
..+.++|++.|+.... +|--++..-+..++.+++.+||.+=+.=- ++| ++++..+
T Consensus 81 ~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilPg--~~p-~vi~~i~ 136 (175)
T PF04309_consen 81 SNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILPG--VMP-KVIKKIR 136 (175)
T ss_dssp HHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEESC--CHH-HHHCCCC
T ss_pred HHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEchH--HHH-HHHHHHH
Confidence 4688999999998421 23233322334567788999999865432 455 3555443
No 422
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=20.92 E-value=3.7e+02 Score=25.08 Aligned_cols=32 Identities=9% Similarity=0.139 Sum_probs=22.4
Q ss_pred eEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEEcCC
Q 048078 51 PLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIVTQP 88 (378)
Q Consensus 51 rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~ 88 (378)
+|+++| |+..+..+++.|++. +++|.+++-++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCC
Confidence 477777 477777888888874 57776655443
No 423
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.91 E-value=2.4e+02 Score=32.60 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCceEEEEecCcchH-----------HHHHHHHHccCCCCCCceEEEEEcCCC
Q 048078 48 RKKPLVFLGSPQVSV-----------NVLDALFNASSSPDSIFEVAAIVTQPP 89 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~-----------~~L~~L~~~~~~~~~~~ei~~Vvt~~~ 89 (378)
...||+++|++.... .++++|.+. ++++++|=.+|.
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~------G~~vi~v~~~p~ 52 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREE------GYRVVLVNSNPA 52 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHHc------CCEEEEEcCCcc
Confidence 357999999996422 467777764 788877755553
No 424
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=20.90 E-value=1.8e+02 Score=28.89 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=40.9
Q ss_pred EEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHH-CCCCCceecCCCCCCcHHHHH
Q 048078 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALD-RGFPADLIFTPERAGEDAFLS 130 (378)
Q Consensus 52 Ivf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~-~gIp~~~v~~~~~~~~~~~~~ 130 (378)
|+++|.+..+..+++.|.+.. .++ -.+|..++. ..+.+.+++ .+..+. ....+-.+.+++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-----~~~-~v~va~r~~----------~~~~~~~~~~~~~~~~-~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-----PFE-EVTVADRNP----------EKAERLAEKLLGDRVE-AVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-----CE--EEEEEESSH----------HHHHHHHT--TTTTEE-EEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC-----CCC-cEEEEECCH----------HHHHHHHhhcccccee-EEEEecCCHHHHHH
Confidence 789999888888888887652 332 223444432 234566655 333322 23333333444444
Q ss_pred HHHhcCCcEEEEecCCCcCChhhhc
Q 048078 131 NLRALQPELCITAAYGNILPSKFLN 155 (378)
Q Consensus 131 ~l~~~~~Dliv~~~~~~ilp~~il~ 155 (378)
.++ +.|++|.+.-.. ....+++
T Consensus 64 ~~~--~~dvVin~~gp~-~~~~v~~ 85 (386)
T PF03435_consen 64 LLR--GCDVVINCAGPF-FGEPVAR 85 (386)
T ss_dssp HHT--TSSEEEE-SSGG-GHHHHHH
T ss_pred HHh--cCCEEEECCccc-hhHHHHH
Confidence 443 459999766322 4444443
No 425
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.84 E-value=1.5e+02 Score=31.21 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=46.7
Q ss_pred CCCCCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCc------------------cCChHHHH
Q 048078 44 FSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRK------------------VLPSPVAQ 105 (378)
Q Consensus 44 ~~~~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~------------------~~~~~v~~ 105 (378)
.+..++.+|+++|.|--+..+-+.|++. +++ |.|+=.++...||=.+ ....|+..
T Consensus 10 ~~~~~~~~VIVIGAGiaGLsAArqL~~~------G~~-V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~ 82 (501)
T KOG0029|consen 10 PEAGKKKKVIVIGAGLAGLSAARQLQDF------GFD-VLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLAL 82 (501)
T ss_pred ccccCCCcEEEECCcHHHHHHHHHHHHc------CCc-eEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHH
Confidence 4667788999999998788888888886 577 4566556666554210 12348889
Q ss_pred HHHHCCCCCc
Q 048078 106 YALDRGFPAD 115 (378)
Q Consensus 106 ~A~~~gIp~~ 115 (378)
++++.|++..
T Consensus 83 l~~qlgl~~~ 92 (501)
T KOG0029|consen 83 LSKQLGLELY 92 (501)
T ss_pred HHHHhCcccc
Confidence 9999999854
No 426
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=20.79 E-value=2.5e+02 Score=28.03 Aligned_cols=62 Identities=16% Similarity=0.114 Sum_probs=37.7
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCC-CCCC--CC---CCccCChHHHHHHHHCCCCCce
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQP-PSRR--DR---GRKVLPSPVAQYALDRGFPADL 116 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~-~~~~--gr---g~~~~~~~v~~~A~~~gIp~~~ 116 (378)
+||++.-|+-.-..++-.|+... +++|++|..+. +... .. ........++++|+++|||++.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~~-----G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~v 68 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ-----GYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEK 68 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHc-----CCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEE
Confidence 57888888876666766666542 57888887631 1100 00 0011223568899999999663
No 427
>PLN03139 formate dehydrogenase; Provisional
Probab=20.77 E-value=8.9e+02 Score=24.54 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred CCCceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcH
Q 048078 47 SRKKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGED 126 (378)
Q Consensus 47 ~~~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~ 126 (378)
-.-++|+++|.+.++..+.+.|... +.+|.+ .++.... .+.+.+.|+. .. .
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~af------G~~V~~--~d~~~~~-----------~~~~~~~g~~---~~--~----- 247 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPF------NCNLLY--HDRLKMD-----------PELEKETGAK---FE--E----- 247 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHC------CCEEEE--ECCCCcc-----------hhhHhhcCce---ec--C-----
Confidence 3466899999999999998888653 566643 3332110 1233445554 11 1
Q ss_pred HHHHHHHhcCCcEEEEecC-----CCcCChhhhcCCCCceEEEccCCCCCCCCc----hHHHHHHHcCCcE-EEEEEEEe
Q 048078 127 AFLSNLRALQPELCITAAY-----GNILPSKFLNIPPMGTVNIHPSLLPLYRGA----APVQRALQGGAKE-TGVSLAFT 196 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~-----~~ilp~~il~~~~~g~iNiHpSlLP~yRG~----~pi~wai~~g~~~-tGvTih~~ 196 (378)
++.+.+ .+.|++++..= ..+|.++.|+..+.|.+=+=- -||. ..+..|+.+|.-. .|.-|+..
T Consensus 248 ~l~ell--~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~-----aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~ 320 (386)
T PLN03139 248 DLDAML--PKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNN-----ARGAIMDTQAVADACSSGHIGGYGGDVWYP 320 (386)
T ss_pred CHHHHH--hhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEEC-----CCCchhhHHHHHHHHHcCCceEEEEcCCCC
Confidence 122333 24788876542 356677788877666333322 2775 6677788888533 45555544
Q ss_pred cCCCCCCCeeEEEEEEeCCCCC--HHHHHHHHHHHHHHHHHHHHHHhHcCC
Q 048078 197 VRALDAGPVIAREKMEVDDQIK--APELLVLLFSEGSELLIRELPSILDGS 245 (378)
Q Consensus 197 ~~~~D~G~Ii~Q~~~~I~~~dt--~~~L~~kl~~~~~~ll~~~l~~l~~g~ 245 (378)
..--..-|......+-+.|.-. ..+-..+ ..+.+.+.|..+.+|+
T Consensus 321 EPlp~d~pL~~~pNvilTPHiag~t~~~~~r----~~~~~~~nl~~~~~G~ 367 (386)
T PLN03139 321 QPAPKDHPWRYMPNHAMTPHISGTTIDAQLR----YAAGVKDMLDRYFKGE 367 (386)
T ss_pred CCCCCCChhhcCCCeEEcccccccCHHHHHH----HHHHHHHHHHHHHcCC
Confidence 4322223333334444544432 2233333 3445556666677776
No 428
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=20.75 E-value=3.5e+02 Score=22.22 Aligned_cols=54 Identities=20% Similarity=0.096 Sum_probs=28.4
Q ss_pred EecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCcee
Q 048078 55 LGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLI 117 (378)
Q Consensus 55 ~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v 117 (378)
.-++..+..-|+.|.+. +++ .||++++....- .......+.+.|+++|+.++++
T Consensus 10 ~vs~Q~~~~d~~~la~~------Gfk--tVInlRpd~E~~-~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 10 SVSGQPSPEDLAQLAAQ------GFK--TVINLRPDGEEP-GQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp EEECS--HHHHHHHHHC------T----EEEE-S-TTSTT-T-T-HHCHHHHHHHCT-EEEE-
T ss_pred EECCCCCHHHHHHHHHC------CCc--EEEECCCCCCCC-CCCCHHHHHHHHHHcCCeEEEe
Confidence 44556688889998875 554 467766442111 1222334778999999996543
No 429
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=20.70 E-value=2.6e+02 Score=27.08 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=25.9
Q ss_pred ceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCC
Q 048078 50 KPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFP 113 (378)
Q Consensus 50 ~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp 113 (378)
-+|+++|.+.++..+++.+... +.+|+++...++ -.++|++.|..
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~~~-------------~~~~~~~~Ga~ 212 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDIDPE-------------KLEMMKGFGAD 212 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCCHH-------------HHHHHHHhCCc
Confidence 4788888876666555544432 455543322221 24677888875
No 430
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=20.64 E-value=3.9e+02 Score=25.30 Aligned_cols=16 Identities=13% Similarity=0.630 Sum_probs=12.5
Q ss_pred HHHHHhcCCcEEEEec
Q 048078 129 LSNLRALQPELCITAA 144 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~ 144 (378)
++.|.+.+||++|..+
T Consensus 84 ~E~I~al~PDlIi~~~ 99 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVT 99 (289)
T ss_pred HHHHhccCCcEEEEcC
Confidence 4667788999999753
No 431
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.59 E-value=1.7e+02 Score=19.00 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=20.9
Q ss_pred hHHHHHHHHCCCCCceecCCCCCCcHHHHHHHHh
Q 048078 101 SPVAQYALDRGFPADLIFTPERAGEDAFLSNLRA 134 (378)
Q Consensus 101 ~~v~~~A~~~gIp~~~v~~~~~~~~~~~~~~l~~ 134 (378)
+.++++..++||+ +-... .+-+++++.+++
T Consensus 7 ~~L~~wL~~~gi~---~~~~~-~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIP---VPKSA-KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCC---CCCCC-CCHHHHHHHHHH
Confidence 5789999999999 43322 255677776654
No 432
>PRK10116 universal stress protein UspC; Provisional
Probab=20.49 E-value=1.7e+02 Score=24.03 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=27.1
Q ss_pred HHHHHHHCCCCCce-ecCCCCCCcHHHHHHHHhcCCcEEEEecCC
Q 048078 103 VAQYALDRGFPADL-IFTPERAGEDAFLSNLRALQPELCITAAYG 146 (378)
Q Consensus 103 v~~~A~~~gIp~~~-v~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 146 (378)
+.+++.+.|++... +.... ...+.+.+..++.++|++|+..-+
T Consensus 69 l~~~~~~~~~~~~~~~~~~G-~~~~~I~~~a~~~~~DLiV~g~~~ 112 (142)
T PRK10116 69 LDKLIQDADYPIEKTFIAYG-ELSEHILEVCRKHHFDLVICGNHN 112 (142)
T ss_pred HHHHHHhcCCCeEEEEEecC-CHHHHHHHHHHHhCCCEEEEcCCc
Confidence 34556677877421 22222 224677888889999999986543
No 433
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=20.48 E-value=5.1e+02 Score=25.74 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=51.3
Q ss_pred EEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecC-CC-CCCc---H
Q 048078 52 LVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFT-PE-RAGE---D 126 (378)
Q Consensus 52 Ivf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~-~~-~~~~---~ 126 (378)
-+++|.+ +..-|..+++.. +.+-+.|||.+.-. ..+ ....+....+++|+.+. ++. .+ +... .
T Consensus 6 ~i~~G~g--~l~~l~~~l~~~-----~~~~~livt~~~~~-~~~---~~~~v~~~L~~~~~~~~-~~~~v~~~p~~~~v~ 73 (376)
T cd08193 6 RIVFGAG--SLARLGELLAAL-----GAKRVLVVTDPGIL-KAG---LIDPLLASLEAAGIEVT-VFDDVEADPPEAVVE 73 (376)
T ss_pred eEEECcC--HHHHHHHHHHHc-----CCCeEEEEcCcchh-hCc---cHHHHHHHHHHcCCeEE-EECCCCCCcCHHHHH
Confidence 3557877 455665555532 34556788865311 111 22457777888898754 332 11 1112 2
Q ss_pred HHHHHHHhcCCcEEEEecCCCcCC
Q 048078 127 AFLSNLRALQPELCITAAYGNILP 150 (378)
Q Consensus 127 ~~~~~l~~~~~Dliv~~~~~~ilp 150 (378)
+..+.+++.++|.+|.+|=|..+.
T Consensus 74 ~~~~~~~~~~~D~IIaiGGGs~iD 97 (376)
T cd08193 74 AAVEAARAAGADGVIGFGGGSSMD 97 (376)
T ss_pred HHHHHHHhcCCCEEEEeCCchHHH
Confidence 345667788999999999876663
No 434
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=20.47 E-value=2.5e+02 Score=32.37 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=26.6
Q ss_pred CCceEEEEecCcch-----------HHHHHHHHHccCCCCCCceEEEEEcCCCC
Q 048078 48 RKKPLVFLGSPQVS-----------VNVLDALFNASSSPDSIFEVAAIVTQPPS 90 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a-----------~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~ 90 (378)
...||+++|++... ..++++|.+. ++++++|-++|+.
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~------G~~vi~v~~np~~ 52 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEE------GYRVILVNSNPAT 52 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHHc------CCEEEEEecchhh
Confidence 35799999999632 2467777664 7999888777653
No 435
>PRK06128 oxidoreductase; Provisional
Probab=20.42 E-value=7.3e+02 Score=23.38 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=19.7
Q ss_pred ceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.+|++.|. +.++..+.+.|++. +.+|+.+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~------G~~V~i~~ 86 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFARE------GADIALNY 86 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHc------CCEEEEEe
Confidence 47888885 44666677777764 56765443
No 436
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=20.42 E-value=2.8e+02 Score=27.15 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=44.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHccCCC-CC--CceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCC
Q 048078 48 RKKPLVFLGSPQVSVNVLDALFNASSSP-DS--IFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAG 124 (378)
Q Consensus 48 ~~~rIvf~Gs~~~a~~~L~~L~~~~~~~-~~--~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~ 124 (378)
.-++|||-|+=+.+-.-++.+++..... .+ .-+...||+.... |. +.=.+-|+++||| |+ +
T Consensus 234 ~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~--~~------ssK~~kA~~~gi~---ii-----~ 297 (313)
T PRK06063 234 QGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPA--PE------QGKGYHARQLGVP---VL-----D 297 (313)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCC--Cc------ccHHHHHHHcCCc---cc-----c
Confidence 4679999998777788888877653211 11 1133345554322 11 0115789999999 53 4
Q ss_pred cHHHHHHHHhcC
Q 048078 125 EDAFLSNLRALQ 136 (378)
Q Consensus 125 ~~~~~~~l~~~~ 136 (378)
+++|++.|.+..
T Consensus 298 e~~f~~ll~~~~ 309 (313)
T PRK06063 298 EAAFLELLRAVV 309 (313)
T ss_pred HHHHHHHHHhhc
Confidence 778888886543
No 437
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=20.40 E-value=8e+02 Score=23.89 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=85.6
Q ss_pred CceEEEEecCcchHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCCCCCcHHH
Q 048078 49 KKPLVFLGSPQVSVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAF 128 (378)
Q Consensus 49 ~~rIvf~Gs~~~a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~~~~~~~~ 128 (378)
..+|+++|.+.++..+.+.|... +++|.++ ....+.. .+.. .+... .++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af------G~~V~~~-~~~~~~~-----------------~~~~--~~~~~-----~~l 184 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW------GFPLRCW-SRSRKSW-----------------PGVQ--SFAGR-----EEL 184 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEE-eCCCCCC-----------------CCce--eeccc-----ccH
Confidence 46999999999988888877653 6776543 2211100 0111 01110 122
Q ss_pred HHHHHhcCCcEEEEecC-----CCcCChhhhcCCCCceEEEccCCCCCCCCc----hHHHHHHHcCCcE-EEEEEEEecC
Q 048078 129 LSNLRALQPELCITAAY-----GNILPSKFLNIPPMGTVNIHPSLLPLYRGA----APVQRALQGGAKE-TGVSLAFTVR 198 (378)
Q Consensus 129 ~~~l~~~~~Dliv~~~~-----~~ilp~~il~~~~~g~iNiHpSlLP~yRG~----~pi~wai~~g~~~-tGvTih~~~~ 198 (378)
.+.+ .+.|++++.-= .+++..++++..+.|.+=+--| ||. ..+..|+.+|.-. .|.-|+....
T Consensus 185 ~e~l--~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a-----RG~vVde~aL~~aL~~g~i~gaalDVf~~EP 257 (312)
T PRK15469 185 SAFL--SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA-----RGVHVVEDDLLAALDSGKVKGAMLDVFSREP 257 (312)
T ss_pred HHHH--hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC-----CccccCHHHHHHHHhcCCeeeEEecCCCCCC
Confidence 2333 24677776432 3566677788777664333333 774 6778888888532 4555555444
Q ss_pred CCCCCCeeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhHcCC
Q 048078 199 ALDAGPVIAREKMEVDDQIKAPELLVLLFSEGSELLIRELPSILDGS 245 (378)
Q Consensus 199 ~~D~G~Ii~Q~~~~I~~~dt~~~L~~kl~~~~~~ll~~~l~~l~~g~ 245 (378)
--+.-+++....+-+.|.-...+-.. ...+.+.+.+..+.+|+
T Consensus 258 l~~~~pl~~~~nvi~TPHiag~t~~~----~~~~~~~~n~~~~~~g~ 300 (312)
T PRK15469 258 LPPESPLWQHPRVAITPHVAAVTRPA----EAVEYISRTIAQLEKGE 300 (312)
T ss_pred CCCCChhhcCCCeEECCcCCCCcCHH----HHHHHHHHHHHHHHcCC
Confidence 33344555444555555433322222 24566778888888876
No 438
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=20.37 E-value=2.6e+02 Score=26.99 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=15.8
Q ss_pred ceEEEEec-CcchHHHHHHHHHc
Q 048078 50 KPLVFLGS-PQVSVNVLDALFNA 71 (378)
Q Consensus 50 ~rIvf~Gs-~~~a~~~L~~L~~~ 71 (378)
|||++.|. +-++..+.+.|++.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~ 23 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN 23 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHh
Confidence 68999995 54556666788774
No 439
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=20.32 E-value=4.2e+02 Score=24.74 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=19.4
Q ss_pred eEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 51 PLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 51 rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
||+++| ++.++..+.+.|++. +++|.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~------g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES------GHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC------CCeEEEE
Confidence 577887 566777777888875 5676544
No 440
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=20.29 E-value=5.4e+02 Score=23.09 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=21.0
Q ss_pred CceEEEEec-CcchHHHHHHHHHccCCCCCCceEEEE
Q 048078 49 KKPLVFLGS-PQVSVNVLDALFNASSSPDSIFEVAAI 84 (378)
Q Consensus 49 ~~rIvf~Gs-~~~a~~~L~~L~~~~~~~~~~~ei~~V 84 (378)
..+|++.|. +.++..+.+.|++. +++|+++
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~------G~~vi~~ 35 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA------GADIVGA 35 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC------CCEEEEE
Confidence 457888885 45777788888875 5666554
No 441
>PRK08177 short chain dehydrogenase; Provisional
Probab=20.27 E-value=6.1e+02 Score=22.48 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=18.7
Q ss_pred ceEEEEe-cCcchHHHHHHHHHccCCCCCCceEEEEE
Q 048078 50 KPLVFLG-SPQVSVNVLDALFNASSSPDSIFEVAAIV 85 (378)
Q Consensus 50 ~rIvf~G-s~~~a~~~L~~L~~~~~~~~~~~ei~~Vv 85 (378)
.++++.| ++.++..+.+.|.+. +.+|+++-
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~------G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER------GWQVTATV 32 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC------CCEEEEEe
Confidence 3577788 444556666777664 56766554
No 442
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.07 E-value=3.9e+02 Score=26.30 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=19.2
Q ss_pred HHHHhcCCcEEEEecCCCcCChhhhcCCCCceEEEccCC
Q 048078 130 SNLRALQPELCITAAYGNILPSKFLNIPPMGTVNIHPSL 168 (378)
Q Consensus 130 ~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl 168 (378)
+.++..++|++|.-.+.. ....+-+.....++.++++.
T Consensus 98 ~~~~~~~pDlvi~d~~~~-~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 98 AAARDWGPDLVVADPLAF-AGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred HHhcccCCCEEEeCcHHH-HHHHHHHHhCCCeEEeeccc
Confidence 334457899998764321 11222223333466666553
No 443
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=20.00 E-value=2.1e+02 Score=25.19 Aligned_cols=82 Identities=18% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCceEEEEecCc---c---hHHHHHHHHHccCCCCCCceEEEEEcCCCCCCCCCCccCChHHHHHHHHCCCCCceecCCC
Q 048078 48 RKKPLVFLGSPQ---V---SVNVLDALFNASSSPDSIFEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPE 121 (378)
Q Consensus 48 ~~~rIvf~Gs~~---~---a~~~L~~L~~~~~~~~~~~ei~~Vvt~~~~~~grg~~~~~~~v~~~A~~~gIp~~~v~~~~ 121 (378)
+++.+++||... . ....|..+.+........++++.|=.+|..- .|..++++++.++.....+ ..
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~D-------Tp~~L~~Y~~~~~~~~~~l-tg- 122 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERD-------TPEVLKKYAKKFGPDFIGL-TG- 122 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC--------HHHHHHHHHCHTTTCEEE-EE-
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCC-------CHHHHHHHHHhcCCCccee-Ee-
Confidence 467788887443 2 2333444444322222357777766666432 3467899999988774322 11
Q ss_pred CCCcHHHHHHHHhcCCcEE
Q 048078 122 RAGEDAFLSNLRALQPELC 140 (378)
Q Consensus 122 ~~~~~~~~~~l~~~~~Dli 140 (378)
..+++.+..+.++..+.
T Consensus 123 --~~~~i~~l~~~~~v~~~ 139 (174)
T PF02630_consen 123 --SREEIEELAKQFGVYYE 139 (174)
T ss_dssp --EHHHHHHHHHHCTHCEE
T ss_pred --CHHHHHHHHHHHHhhhc
Confidence 12344445555554443
Done!