BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048079
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 112 WSTNTNG-KSVVGLTLTDTGNLVLFNKKNAAVWQS 145
W++NT G S LTL + GNLV++++ N +WQ+
Sbjct: 42 WASNTGGLGSGCRLTLHNNGNLVIYDQSNRVIWQT 76
>pdb|3M7H|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7H|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp.
pdb|3M7J|A Chain A, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
pdb|3M7J|B Chain B, Crystal Structure Of The Bacteriocin Llpa From Pseudomonas
Sp. In Complex With Met-Mannose
Length = 276
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 112 WSTNTNGKSVVGLTLTDTGNLVLFNKKNAAVWQS 145
W+ T GK V GNLV++ NA +W S
Sbjct: 187 WNAGTQGKGAVRAVFQGDGNLVVYGAGNAVLWHS 220
>pdb|2D04|A Chain A, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|C Chain C, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|E Chain E, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|G Chain G, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 113
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 112 WSTNTNGK-SVVGLTLTDTGNLVLFNKKNAAVWQS 145
W+++T+G+ S LTL GNL++++ N VW S
Sbjct: 41 WASDTDGQGSQCRLTLRSDGNLIIYDDNNMVVWGS 75
>pdb|3R0E|A Chain A, Structure Of Remusatia Vivipara Lectin
pdb|3R0E|C Chain C, Structure Of Remusatia Vivipara Lectin
Length = 109
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 112 WSTNT--NGKSVVGLTLTDTGNLVLFNKKNAAVWQS 145
W +NT NG+ LTLTD G LV+ N + VW+S
Sbjct: 40 WQSNTANNGRDCK-LTLTDYGELVIKNGDGSTVWKS 74
>pdb|2EH0|A Chain A, Solution Structure Of The Fha Domain From Human Kinesin-
Like Protein Kif1b
Length = 130
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 85 IGFPQVVWAANRNNPVRINATLELTSPWSTNTNGKSVVGLTLTDTGNLVLFNKKNAAVWQ 144
I ++ + R+N + TLE T NGK V +GN ++ K + V++
Sbjct: 53 IKEEHCIFRSERSNSGEVIVTLEPCERSETYVNGKRVSQPVQLRSGNRIIMGKNH--VFR 110
Query: 145 SFDHPTDSLVPGQK 158
F+HP + +K
Sbjct: 111 -FNHPEQARAEREK 123
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 112 WSTNTNGK-SVVGLTLTDTGNLVLFNKKNAAVWQS 145
W++NT+ + S LTL GNLV+++ N VW S
Sbjct: 42 WASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 76
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 112 WSTNTNGK-SVVGLTLTDTGNLVLFNKKNAAVWQS 145
W++NT+ + S LTL GNLV+++ N VW S
Sbjct: 41 WASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGS 75
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 112 WSTNTNGKSV-VGLTLTDTGNLVLFNKKNAAVWQS 145
W+TNT G S L++ GNLV++N N +W S
Sbjct: 41 WATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWAS 75
>pdb|2W9X|A Chain A, The Active Site Of A Carbohydrate Esterase Displays
Divergent Catalytic And Non-Catalytic Binding Functions
pdb|2W9X|B Chain B, The Active Site Of A Carbohydrate Esterase Displays
Divergent Catalytic And Non-Catalytic Binding Functions
Length = 366
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 147 DHPTDSLVPGQKLVEGKKLTASVSTT 172
D+P +SL PG+ V +KLT + ST+
Sbjct: 96 DYPVESLAPGKHRVRLEKLTETQSTS 121
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 109 TSPWSTNTN--GKSVVGLTLTDTGNLVLFNKKNAAVWQSF 146
T+ WS+NT+ GK L GN V+++ + A++W S
Sbjct: 38 TAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASH 77
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 109 TSPWSTNTN--GKSVVGLTLTDTGNLVLFNKKNAAVWQSF 146
T+ WS+NT+ GK L GN V+++ + A++W S
Sbjct: 38 TAVWSSNTDIPGKKGCKAVLQSDGNFVVYDAEGASLWASH 77
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 112 WSTNTNG-KSVVGLTLTDTGNLVLFNKKNAAVWQS 145
W+TNT G L++ GNLV+++ +N +W S
Sbjct: 41 WATNTGGLDRRCHLSMQSDGNLVVYSPRNNPIWAS 75
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 77 ASSIVAPAIGFPQVVWAANRNNPVRIN-ATLELTSPWSTNT---NGKSVV---------G 123
A++ + P G ++W++ RN+ + + LTS W +T + ++V G
Sbjct: 194 AAAAIEPTSGR-VLMWSSYRNDAFEGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 252
Query: 124 LTLTDTGNLVLFNKKNAAVWQSFDHPTDSLVPGQKLVEGKKLTASVSTTNWK---DGGLF 180
+++ G +V+ +A +D +DS +PG + + +S + ++ + GG F
Sbjct: 253 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSF 312
Query: 181 SLSVTKK 187
S V +K
Sbjct: 313 SGGVFEK 319
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 123 GLTLTDTGNLVLFNKKNAAVWQSFDHPTDSLVPG--QKLVEGKKLTASVSTTNWKDGGLF 180
G+++ G +V+ +A +D +DS +PG ++ G + +A++S DG +F
Sbjct: 230 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-----DGRVF 284
Query: 181 SLSVTKKG 188
++ + G
Sbjct: 285 TIGGSHSG 292
>pdb|4H3O|A Chain A, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
pdb|4H3O|B Chain B, Crystal Structure Of A New Form Of Lectin From Allium
Sativum At 2.17 A Resolution
Length = 105
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 109 TSPWSTNTN--GKSVVGLTLTDTGNLVLFNKKNAAVWQS 145
TS W++NT GKS L GN V+++ ++W S
Sbjct: 38 TSTWASNTEIGGKSGCSAVLQSDGNFVVYDSSGRSLWAS 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,304,401
Number of Sequences: 62578
Number of extensions: 250340
Number of successful extensions: 656
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 36
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)