Query         048079
Match_columns 199
No_of_seqs    156 out of 1215
Neff          5.5 
Searched_HMMs 46136
Date          Fri Mar 29 06:03:39 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048079hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF01453 B_lectin:  D-mannose b  99.9 9.6E-24 2.1E-28  163.0   4.1   88   88-175     2-114 (114)
  2 cd00028 B_lectin Bulb-type man  99.8 3.4E-20 7.5E-25  142.4  12.6  100   32-149     3-116 (116)
  3 smart00108 B_lectin Bulb-type   99.8 4.4E-19 9.4E-24  135.7  12.0   98   32-148     3-114 (114)
  4 cd00028 B_lectin Bulb-type man  97.8 0.00014   3E-09   55.6   7.8   36  111-146    44-81  (116)
  5 smart00108 B_lectin Bulb-type   97.6 0.00028 6.1E-09   53.7   7.8   57  111-193    43-101 (114)
  6 PF01453 B_lectin:  D-mannose b  95.9    0.03 6.4E-07   43.0   6.3   35  111-145     5-44  (114)
  7 PF12690 BsuPI:  Intracellular   60.2      17 0.00036   26.5   4.0   13  132-144    28-40  (82)
  8 PF01436 NHL:  NHL repeat;  Int  51.0      29 0.00064   19.8   3.3   21  123-143     6-26  (28)
  9 PF10681 Rot1:  Chaperone for p  45.3 1.2E+02  0.0027   26.2   7.5  125   54-199    16-150 (212)
 10 PF05833 FbpA:  Fibronectin-bin  22.6      88  0.0019   29.0   3.2   39  123-161   116-160 (455)

No 1  
>PF01453 B_lectin:  D-mannose binding lectin;  InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]:  Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein   This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity.  Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.88  E-value=9.6e-24  Score=162.98  Aligned_cols=88  Identities=51%  Similarity=0.799  Sum_probs=60.0

Q ss_pred             CcEEEEecCCCcccc---Cceeeeee-------------eeec-CCCCCc--eeEEEEccCCCeEEeecCCceEEeccCC
Q 048079           88 PQVVWAANRNNPVRI---NATLELTS-------------PWST-NTNGKS--VVGLTLTDTGNLVLFNKKNAAVWQSFDH  148 (199)
Q Consensus        88 ~tvVW~ANr~~Pv~~---~s~L~lt~-------------vWst-~~~~~~--~~~~~LldsGNLVL~~~~~~vlWQSFd~  148 (199)
                      ++|||+|||+.|+..   .++|.|+.             +|++ ++.+.+  ...|+|+|+|||||++..+.+|||||||
T Consensus         2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~   81 (114)
T PF01453_consen    2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNVLWQSFDY   81 (114)
T ss_dssp             --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEEEEESTTS
T ss_pred             cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecceEEEeecCC
Confidence            689999999999943   36676664             8999 556544  7789999999999999888999999999


Q ss_pred             CcCcccCCccccCC------CEEEEeeCCCCCC
Q 048079          149 PTDSLVPGQKLVEG------KKLTASVSTTNWK  175 (199)
Q Consensus       149 PTDTlLPGq~L~~~------~~L~S~~s~~d~s  175 (199)
                      |+||+||+|+|+.+      ..|++|++.+||+
T Consensus        82 ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   82 PTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             SS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             CccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            99999999999873      2489999998875


No 2  
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.84  E-value=3.4e-20  Score=142.41  Aligned_cols=100  Identities=36%  Similarity=0.566  Sum_probs=81.6

Q ss_pred             ccCCCceEEEeeeeCCCCCeEEeeeecCCCCCceEEEEEEEeccCCCccccCCCCCCcEEEEecCCCccccCceeeeee-
Q 048079           32 AFTDGSTVRAILLRGTFGPRYACGFFCNGACDTYLFAVFIVQTNSASSIVAPAIGFPQVVWAANRNNPVRINATLELTS-  110 (199)
Q Consensus        32 ~~~dg~~~~~~l~~~S~~g~F~lGFf~~~~~~~~~lgIw~~~~n~~~~~~~~~~~~~tvVW~ANr~~Pv~~~s~L~lt~-  110 (199)
                      .+.+|+++.      |.++.|++|||.+.....++.+|||..           .. .++||.||++.|....+.|.|+. 
T Consensus         3 ~l~~~~~l~------s~~~~f~~G~~~~~~q~~dgnlv~~~~-----------~~-~~~vW~snt~~~~~~~~~l~l~~d   64 (116)
T cd00028           3 PLSSGQTLV------SSGSLFELGFFKLIMQSRDYNLILYKG-----------SS-RTVVWVANRDNPSGSSCTLTLQSD   64 (116)
T ss_pred             CcCCCCEEE------eCCCcEEEecccCCCCCCeEEEEEEeC-----------CC-CeEEEECCCCCCCCCCEEEEEecC
Confidence            466777777      689999999999854223899999965           23 68999999998865556666654 


Q ss_pred             ------------eeecCCCC-CceeEEEEccCCCeEEeecCCceEEeccCCC
Q 048079          111 ------------PWSTNTNG-KSVVGLTLTDTGNLVLFNKKNAAVWQSFDHP  149 (199)
Q Consensus       111 ------------vWst~~~~-~~~~~~~LldsGNLVL~~~~~~vlWQSFd~P  149 (199)
                                  +|++++.+ .....++|+|+|||||++.++.+||||||||
T Consensus        65 GnLvl~~~~g~~vW~S~~~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~P  116 (116)
T cd00028          65 GNLVIYDGSGTVVWSSNTTRVNGNYVLVLLDDGNLVLYDSDGNFLWQSFDYP  116 (116)
T ss_pred             CCeEEEcCCCcEEEEecccCCCCceEEEEeCCCCEEEECCCCCEEEcCCCCC
Confidence                        99999876 5567889999999999999999999999998


No 3  
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.81  E-value=4.4e-19  Score=135.74  Aligned_cols=98  Identities=35%  Similarity=0.559  Sum_probs=80.6

Q ss_pred             ccCCCceEEEeeeeCCCCCeEEeeeecCCCCCceEEEEEEEeccCCCccccCCCCCCcEEEEecCCCccccCceeeeee-
Q 048079           32 AFTDGSTVRAILLRGTFGPRYACGFFCNGACDTYLFAVFIVQTNSASSIVAPAIGFPQVVWAANRNNPVRINATLELTS-  110 (199)
Q Consensus        32 ~~~dg~~~~~~l~~~S~~g~F~lGFf~~~~~~~~~lgIw~~~~n~~~~~~~~~~~~~tvVW~ANr~~Pv~~~s~L~lt~-  110 (199)
                      .+.+|+.+.      |.++.|++|||.+.. ..++.+|||..           .+ .++||.|||+.|+..++.|.|.+ 
T Consensus         3 ~l~~~~~l~------s~~~~f~~G~~~~~~-q~dgnlV~~~~-----------~~-~~~vW~snt~~~~~~~~~l~l~~d   63 (114)
T smart00108        3 TLSSGQTLV------SGNSLFELGFFTLIM-QNDYNLILYKS-----------SS-RTVVWVANRDNPVSDSCTLTLQSD   63 (114)
T ss_pred             ccCCCCEEe------cCCCcEeeeccccCC-CCCEEEEEEEC-----------CC-CcEEEECCCCCCCCCCEEEEEeCC
Confidence            456777776      789999999999853 46889999865           23 68999999999987656665553 


Q ss_pred             ------------eeecCCC-CCceeEEEEccCCCeEEeecCCceEEeccCC
Q 048079          111 ------------PWSTNTN-GKSVVGLTLTDTGNLVLFNKKNAAVWQSFDH  148 (199)
Q Consensus       111 ------------vWst~~~-~~~~~~~~LldsGNLVL~~~~~~vlWQSFd~  148 (199)
                                  +|++++. +.....++|+|+|||||++..+.++||||||
T Consensus        64 GnLvl~~~~g~~vW~S~t~~~~~~~~~~L~ddGnlvl~~~~~~~~W~Sf~~  114 (114)
T smart00108       64 GNLVLYDGDGRVVWSSNTTGANGNYVLVLLDDGNLVIYDSDGNFLWQSFDY  114 (114)
T ss_pred             CCEEEEeCCCCEEEEecccCCCCceEEEEeCCCCEEEECCCCCEEeCCCCC
Confidence                        8999986 5566789999999999999988999999997


No 4  
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=97.76  E-value=0.00014  Score=55.60  Aligned_cols=36  Identities=36%  Similarity=0.677  Sum_probs=30.3

Q ss_pred             eeecCCCC--CceeEEEEccCCCeEEeecCCceEEecc
Q 048079          111 PWSTNTNG--KSVVGLTLTDTGNLVLFNKKNAAVWQSF  146 (199)
Q Consensus       111 vWst~~~~--~~~~~~~LldsGNLVL~~~~~~vlWQSF  146 (199)
                      +|++++..  .....+.|+++|||||.+.++.++|+|-
T Consensus        44 vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~   81 (116)
T cd00028          44 VWVANRDNPSGSSCTLTLQSDGNLVIYDGSGTVVWSSN   81 (116)
T ss_pred             EEECCCCCCCCCCEEEEEecCCCeEEEcCCCcEEEEec
Confidence            79999864  3456789999999999999999999973


No 5  
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=97.64  E-value=0.00028  Score=53.66  Aligned_cols=57  Identities=28%  Similarity=0.513  Sum_probs=41.7

Q ss_pred             eeecCCCCC--ceeEEEEccCCCeEEeecCCceEEeccCCCcCcccCCccccCCCEEEEeeCCCCCCCceeEEEEEeCCC
Q 048079          111 PWSTNTNGK--SVVGLTLTDTGNLVLFNKKNAAVWQSFDHPTDSLVPGQKLVEGKKLTASVSTTNWKDGGLFSLSVTKKG  188 (199)
Q Consensus       111 vWst~~~~~--~~~~~~LldsGNLVL~~~~~~vlWQSFd~PTDTlLPGq~L~~~~~L~S~~s~~d~s~~G~fsl~l~~~g  188 (199)
                      +|++++...  ....+.|+++|||||++.++.++|+|-..      .                   .. |.|.+.|+++|
T Consensus        43 vW~snt~~~~~~~~~l~l~~dGnLvl~~~~g~~vW~S~t~------~-------------------~~-~~~~~~L~ddG   96 (114)
T smart00108       43 VWVANRDNPVSDSCTLTLQSDGNLVLYDGDGRVVWSSNTT------G-------------------AN-GNYVLVLLDDG   96 (114)
T ss_pred             EEECCCCCCCCCCEEEEEeCCCCEEEEeCCCCEEEEeccc------C-------------------CC-CceEEEEeCCC
Confidence            799987532  23578899999999999988999997211      1                   12 56778888888


Q ss_pred             ceEEE
Q 048079          189 LFASI  193 (199)
Q Consensus       189 ~~~~i  193 (199)
                      ...+.
T Consensus        97 nlvl~  101 (114)
T smart00108       97 NLVIY  101 (114)
T ss_pred             CEEEE
Confidence            76554


No 6  
>PF01453 B_lectin:  D-mannose binding lectin;  InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]:  Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein   This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity.  Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=95.86  E-value=0.03  Score=43.04  Aligned_cols=35  Identities=34%  Similarity=0.709  Sum_probs=23.2

Q ss_pred             eeecCCCCC-----ceeEEEEccCCCeEEeecCCceEEec
Q 048079          111 PWSTNTNGK-----SVVGLTLTDTGNLVLFNKKNAAVWQS  145 (199)
Q Consensus       111 vWst~~~~~-----~~~~~~LldsGNLVL~~~~~~vlWQS  145 (199)
                      ||..+....     +...+.|+++|||||.+..+.++|+|
T Consensus         5 vW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss   44 (114)
T PF01453_consen    5 VWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSS   44 (114)
T ss_dssp             -----TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE-
T ss_pred             ccccccccccccccccccceECCCCeEEEEcCCCCEEEEe
Confidence            687775421     22568999999999999998899999


No 7  
>PF12690 BsuPI:  Intracellular proteinase inhibitor;  InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=60.24  E-value=17  Score=26.48  Aligned_cols=13  Identities=31%  Similarity=0.759  Sum_probs=7.4

Q ss_pred             eEEeecCCceEEe
Q 048079          132 LVLFNKKNAAVWQ  144 (199)
Q Consensus       132 LVL~~~~~~vlWQ  144 (199)
                      |+|+|+.+..||+
T Consensus        28 ~~v~d~~g~~vwr   40 (82)
T PF12690_consen   28 FVVKDKEGKEVWR   40 (82)
T ss_dssp             EEEE-TT--EEEE
T ss_pred             EEEECCCCCEEEE
Confidence            6777777777776


No 8  
>PF01436 NHL:  NHL repeat;  InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ].  The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=51.04  E-value=29  Score=19.82  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=16.7

Q ss_pred             EEEEccCCCeEEeecCCceEE
Q 048079          123 GLTLTDTGNLVLFNKKNAAVW  143 (199)
Q Consensus       123 ~~~LldsGNLVL~~~~~~vlW  143 (199)
                      .+.+.++|+|++-|..+..||
T Consensus         6 gvav~~~g~i~VaD~~n~rV~   26 (28)
T PF01436_consen    6 GVAVDSDGNIYVADSGNHRVQ   26 (28)
T ss_dssp             EEEEETTSEEEEEECCCTEEE
T ss_pred             EEEEeCCCCEEEEECCCCEEE
Confidence            455669999999998877665


No 9  
>PF10681 Rot1:  Chaperone for protein-folding within the ER, fungal;  InterPro: IPR019623  This conserved fungal family is an essential molecular chaperone in the endoplasmic reticulum. Molecular chaperones transiently interact with unfolded proteins to inhibit their self-aggregation and to support their folding and/or assembly. Rot1 is a general chaperone with some substrate specificity, its substrates being the structurally unrelated Kre5 Kre6 Big1 Atg22, which are type I, type II, and polytopic membrane proteins. The dependencies of each for Rot1 do not share similarities. However, their folding does require BiP, and one of these proteins was simultaneously associated with both Rot1 and BiP. In addition, Rot1 may cooperate with BiP/Kar2 in the folding of Kre6 []. 
Probab=45.26  E-value=1.2e+02  Score=26.22  Aligned_cols=125  Identities=16%  Similarity=0.105  Sum_probs=68.9

Q ss_pred             eeeecCCCCC---ceEEEEEEEeccCCCccccCCCCCCcEEEEecCCCccccCceeeeeeeeecCCCCCceeEEEEccCC
Q 048079           54 CGFFCNGACD---TYLFAVFIVQTNSASSIVAPAIGFPQVVWAANRNNPVRINATLELTSPWSTNTNGKSVVGLTLTDTG  130 (199)
Q Consensus        54 lGFf~~~~~~---~~~lgIw~~~~n~~~~~~~~~~~~~tvVW~ANr~~Pv~~~s~L~lt~vWst~~~~~~~~~~~LldsG  130 (199)
                      -|||.|.+..   .-.=||-|....  .|.+    .......++|...|-=-.+.|    +|...       .-.|.++|
T Consensus        16 pgFydPv~~~f~eP~~~GISYSFT~--DG~~----EeA~Yr~~~Np~~p~C~~a~l----~wQHG-------tY~l~~nG   78 (212)
T PF10681_consen   16 PGFYDPVDELFIEPSLPGISYSFTE--DGYF----EEAQYRVTSNPTNPSCPTAVL----IWQHG-------TYELNSNG   78 (212)
T ss_pred             CcccChhHhhccCCCCCceeEEEcC--CCee----eEEEEEEccCCCCCCCCceEE----EEecc-------eEEECCCC
Confidence            3888875311   123366665532  1111    112345667765553222444    46653       24677999


Q ss_pred             CeEEee--cCCceEEeccCCCcCccc-CCccccCCCEEEEeeCCCCCCCceeEEEEEeC-CCce---EEEecCCCC
Q 048079          131 NLVLFN--KKNAAVWQSFDHPTDSLV-PGQKLVEGKKLTASVSTTNWKDGGLFSLSVTK-KGLF---ASIESNNTP  199 (199)
Q Consensus       131 NLVL~~--~~~~vlWQSFd~PTDTlL-PGq~L~~~~~L~S~~s~~d~s~~G~fsl~l~~-~g~~---~~i~~~~~~  199 (199)
                      .|+|.-  .+|.   |-+..|+..=- .-.+......+.++.-..|+.. |.|.|+|-. +|.+   +|+...||+
T Consensus        79 sl~L~P~~~DGr---Ql~sdPC~~~~s~y~rYnq~e~f~~~~v~~D~y~-~~~~L~L~~fDGsp~~pmyL~y~pP~  150 (212)
T PF10681_consen   79 SLTLTPFAVDGR---QLVSDPCADDSSTYTRYNQTELFKSFDVYVDPYH-GRYRLQLYQFDGSPMQPMYLAYRPPM  150 (212)
T ss_pred             cEEEeecCCCCc---eeccCCCCCCcccEEEEcceEEEEEEEEEEeCCC-CeeEEEEEccCCCcCCcchhccCCcc
Confidence            999974  4665   44555655431 0111222345666777778888 999999853 5543   576667763


No 10 
>PF05833 FbpA:  Fibronectin-binding protein A N-terminus (FbpA);  InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=22.63  E-value=88  Score=28.96  Aligned_cols=39  Identities=13%  Similarity=0.230  Sum_probs=21.4

Q ss_pred             EEEEccC-CCeEEeecCCceEEeccCCCcC-----cccCCccccC
Q 048079          123 GLTLTDT-GNLVLFNKKNAAVWQSFDHPTD-----SLVPGQKLVE  161 (199)
Q Consensus       123 ~~~Llds-GNLVL~~~~~~vlWQSFd~PTD-----TlLPGq~L~~  161 (199)
                      .++|..- ||++|.|+++.+|+---..+.+     +++||+....
T Consensus       116 i~El~g~~~NiiL~d~~~~Il~a~~~~~~~~~~~R~i~~G~~Y~~  160 (455)
T PF05833_consen  116 IIELMGRHSNIILTDEDGKILDALRRVSFSQSRDREILPGEPYIP  160 (455)
T ss_dssp             EEE--GGG-EEEEEETT-BEEEESS-B---------BSTTSB---
T ss_pred             EEEEcCCcccEEEEcCCCeEEeehhhcCcccccceeeccCccccc
Confidence            4566666 9999999999888654444444     8999998754


Done!